{"meta":{"query_hash":"15263f36a7ae","filters":{"topic":"Pneumonia and Respiratory Infections"},"cohort_total":1783,"direct_labels_cover":7,"predictions_cover":1783,"exported":1783,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/15263f36a7ae","api":"https://metacan.xera.ac/api/v1/cohort?topic=Pneumonia+and+Respiratory+Infections"},"results":[{"id":"W108758827","doi":"10.1016/j.idc.2012.11.001","title":"Guidelines and Quality Measures","year":2013,"lang":"en","type":"review","venue":"Infectious Disease Clinics of North America","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Community-acquired pneumonia; Psychological intervention; Intensive care medicine; Quality (philosophy); Quality management; Pneumonia; Quality of evidence; Nursing; Surgery; Operations management; Randomized controlled trial; Internal medicine","score_opus":0.17577839032601125,"score_gpt":0.44657686112508066,"score_spread":0.2707984707990694,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W108758827","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0021753164,0.99491113,0.000071997914,0.00010025497,0.0004398252,0.0012619548,0.0002721229,0.00016934067,0.0005980298],"genre_scores_gemma":[0.00038861824,0.997739,0.000047864887,0.00073789526,0.00040387953,0.00023495265,0.00014858154,0.000071999944,0.00022718906],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9966024,0.00030096623,0.0018503378,0.0005639697,0.00037899544,0.00030333453],"domain_scores_gemma":[0.99595755,0.0005210017,0.0011869932,0.000822943,0.0007607139,0.00075078063],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002512113,0.0005201845,0.0026013209,0.00032515725,0.00013164338,0.000026829573,0.0001339331,0.00021980498,0.00007278159],"category_scores_gemma":[0.0027077177,0.00038852383,0.0011073923,0.00051330065,0.0004644268,0.00007546305,0.000112147194,0.0005322157,0.00015009945],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009983038,0.00033049108,0.053860318,0.010606832,0.00049178244,0.000015087865,0.000006011667,0.0000021880683,1.2887212e-7,0.0000066718935,0.0008854121,0.9337851],"study_design_scores_gemma":[0.00031941524,0.00027303552,0.014607453,0.0027161478,0.0030450588,0.000031591273,0.0000031535587,0.0000044536428,2.1042592e-8,0.000024058176,0.9786203,0.00035531938],"about_ca_topic_score_codex":0.0001174133,"about_ca_topic_score_gemma":0.000040787334,"teacher_disagreement_score":0.97773486,"about_ca_system_score_codex":0.00006064101,"about_ca_system_score_gemma":0.0011185417,"threshold_uncertainty_score":0.99985665},"labels":[],"label_agreement":null},{"id":"W121198607","doi":"10.1155/2010/867571","title":"Pneumococcal Peritonitis: Still with Us and Likely to Increase in Importance","year":2010,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary; University of Alberta","funders":"University of Alberta; Pfizer","keywords":"Medicine; Peritonitis; Serotype; Streptococcus pneumoniae; Internal medicine; Hepatitis; Gastroenterology; Immunology; Antibiotics; Microbiology; Biology","score_opus":0.0032026160161666164,"score_gpt":0.2219717900503647,"score_spread":0.21876917403419807,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W121198607","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99639785,0.00048047482,0.000007966736,0.0024468133,0.00030310446,0.00014686122,0.00004476902,0.000007229463,0.00016494167],"genre_scores_gemma":[0.9960602,0.00009573591,0.00001636967,0.003567061,0.00022440474,0.0000067053297,0.0000041997637,0.000011152203,0.000014184606],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99919367,0.00004210428,0.0002691298,0.0001549768,0.000052612642,0.00028749648],"domain_scores_gemma":[0.9972429,0.00006462998,0.00007168554,0.00008760434,0.00011757139,0.0024155767],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013485734,0.000124869,0.00032112977,0.00033171684,0.0000802197,0.000018789335,0.000050952607,0.00016381725,0.00021035472],"category_scores_gemma":[0.00054981455,0.00008882406,0.000044135268,0.00014527809,0.00041441395,0.000045867193,0.000012811137,0.0005376699,0.0000025971628],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000053116964,0.00006257124,0.97188586,0.000027950271,0.000037823622,0.00208331,0.00008636606,6.295713e-7,0.022691395,0.00005650933,0.0001609375,0.0028535088],"study_design_scores_gemma":[0.0016107623,0.0011457196,0.9166872,0.00015710584,0.00007866513,0.02862662,0.00005301935,0.0000025420206,0.000032472195,0.000034771485,0.05145145,0.00011968972],"about_ca_topic_score_codex":0.0028592506,"about_ca_topic_score_gemma":0.10988898,"teacher_disagreement_score":0.10702973,"about_ca_system_score_codex":0.0000610093,"about_ca_system_score_gemma":0.0019576515,"threshold_uncertainty_score":0.90635324},"labels":[],"label_agreement":null},{"id":"W127043737","doi":"10.1155/2006/835768","title":"Pneumococcal Conjugate Vaccination in Canadian Infants and Children Younger than Five Years of Age: Recommendations and Expected Benefits","year":2006,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph; University of Prince Edward Island","funders":"","keywords":"Medicine; Vaccination; Streptococcus pneumoniae; Pneumococcal conjugate vaccine; Incidence (geometry); Pneumonia; Pediatrics; Conjugate vaccine; Meningitis; Otitis; Herd immunity; Pneumococcal infections; Disease; Immunology; Immunization; Internal medicine; Antibiotics; Surgery","score_opus":0.004313828869384653,"score_gpt":0.22834166543126014,"score_spread":0.22402783656187547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W127043737","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99542737,0.0021332705,0.0000016968331,0.0018402459,0.00017633788,0.00015209509,0.00016658207,0.0000041621483,0.00009826781],"genre_scores_gemma":[0.9986795,0.00065031997,0.0000040981868,0.00048604282,0.00009802499,0.0000033041533,0.000056963396,0.000008243167,0.000013473024],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99917036,0.00007086164,0.00033297573,0.00012819885,0.000040523846,0.0002570943],"domain_scores_gemma":[0.9986398,0.00007005059,0.00011414023,0.00005776345,0.00010622469,0.0010119942],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012775401,0.00009957319,0.00029059334,0.000585941,0.00009213496,0.000014752343,0.00003580704,0.00016726255,0.00009925088],"category_scores_gemma":[0.00030252378,0.00009072655,0.000042247615,0.00015184669,0.00019952578,0.00006957258,0.000010143364,0.0002294873,6.0201097e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001465772,0.00004241958,0.98916715,0.000014983475,0.000059095648,0.00016401517,0.00012529467,0.000002997416,0.001769342,0.00016965989,0.00029507856,0.008175308],"study_design_scores_gemma":[0.0014884897,0.00027692047,0.99319917,0.00014918613,0.00008004526,0.0025060943,0.000045120076,0.0000053010135,0.000018748735,0.00009824855,0.0020494163,0.0000832797],"about_ca_topic_score_codex":0.25058863,"about_ca_topic_score_gemma":0.76643395,"teacher_disagreement_score":0.51584536,"about_ca_system_score_codex":0.00012025958,"about_ca_system_score_gemma":0.0011833987,"threshold_uncertainty_score":0.7544018},"labels":[],"label_agreement":null},{"id":"W128579761","doi":"10.1093/pch/7.7.447","title":"Management of bacterial meningitis in children: Controversies in the management of bacterial meningitis","year":2002,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Children's Hospital; University of Calgary","funders":"","keywords":"Meningitis; Dexamethasone; Streptococcus pneumoniae; Medicine; Haemophilus influenzae; Neisseria meningitidis; Antibiotics; Pediatrics; Intensive care medicine; Internal medicine; Microbiology; Biology; Bacteria","score_opus":0.011380669646264937,"score_gpt":0.250264561428164,"score_spread":0.23888389178189906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W128579761","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9845426,0.0012606703,0.000019973035,0.0037782458,0.00054856314,0.0015301828,0.000098975936,0.000024130024,0.008196678],"genre_scores_gemma":[0.9924352,0.0064258366,0.00022442635,0.000405489,0.00034416714,0.000046655143,0.000053467473,0.000019783545,0.000044942874],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99791366,0.000157251,0.0007902931,0.0002848792,0.0004187128,0.00043523387],"domain_scores_gemma":[0.999101,0.00008515508,0.0003277886,0.00035134907,0.000033461987,0.000101271355],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00060115836,0.00019586638,0.0005145262,0.00039436977,0.000107704655,0.000014882789,0.00018372638,0.00008700278,0.0002328193],"category_scores_gemma":[0.000016425713,0.00016040367,0.00013428734,0.00073589827,0.000069999485,0.00006141276,0.00008091727,0.00027162573,0.000009964843],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00085621857,0.006517627,0.8464346,0.0057745134,0.0019012118,0.00065416493,0.015784089,0.00019769471,0.000742736,0.01730161,0.012655851,0.09117966],"study_design_scores_gemma":[0.009092389,0.0008709665,0.9756576,0.00051775493,0.00023862658,0.000080226695,0.0009393902,0.000033237287,0.00006293935,0.00006823341,0.0122095,0.00022914096],"about_ca_topic_score_codex":0.00014957991,"about_ca_topic_score_gemma":0.00003772856,"teacher_disagreement_score":0.12922297,"about_ca_system_score_codex":0.00015394732,"about_ca_system_score_gemma":0.00003491104,"threshold_uncertainty_score":0.6541072},"labels":[],"label_agreement":null},{"id":"W1421738500","doi":"10.1016/j.vaccine.2015.08.080","title":"Immunogenicity and safety of a 13-valent pneumococcal conjugate vaccine in adults 18–49 years of age, naive to 23-valent pneumococcal polysaccharide vaccine","year":2015,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"inVentiv Health Clinical","funders":"","keywords":"Immunogenicity; Medicine; Pneumococcal conjugate vaccine; Tolerability; Pneumococcal polysaccharide vaccine; Vaccination; Cohort; Pneumococcal vaccine; Immunology; Serotype; Internal medicine; Streptococcus pneumoniae; Pediatrics; Adverse effect; Immune system; Pneumococcal disease; Biology","score_opus":0.019516272280472632,"score_gpt":0.2812773396071642,"score_spread":0.2617610673266916,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1421738500","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99492854,0.00085052196,0.000034437366,0.0015249476,0.00038514505,0.0016403624,0.00011471483,0.00008387549,0.00043747574],"genre_scores_gemma":[0.9983384,0.0005562117,0.00010308067,0.0003783839,0.0001970896,0.00007474912,0.00003899147,0.00006638254,0.00024668913],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9964174,0.00017870737,0.0015539667,0.0006970159,0.0005122663,0.00064064254],"domain_scores_gemma":[0.99745756,0.00017068471,0.00040796478,0.0008095004,0.00044743644,0.0007068564],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007530234,0.00047107213,0.0014222319,0.00075644994,0.00006712407,0.000013877724,0.00027047467,0.00027235836,0.000115678435],"category_scores_gemma":[0.0005388882,0.00042588325,0.00025839097,0.0010188578,0.000033188495,0.00015722871,0.00033428406,0.00055594766,0.00006441003],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007207884,0.0012846943,0.37340495,0.00046205588,0.00033293158,0.0003168425,0.0015640651,0.0002251381,0.61143726,0.000076444165,0.0008040359,0.0028836776],"study_design_scores_gemma":[0.015667258,0.0027226703,0.95474124,0.00086623523,0.00025237375,0.00027310697,0.00032586823,0.00014881032,0.021180775,0.00006128855,0.0033543776,0.0004059971],"about_ca_topic_score_codex":0.00086251425,"about_ca_topic_score_gemma":0.000656971,"teacher_disagreement_score":0.5902565,"about_ca_system_score_codex":0.00023746259,"about_ca_system_score_gemma":0.00028066745,"threshold_uncertainty_score":0.9998193},"labels":[],"label_agreement":null},{"id":"W1434941232","doi":"10.1155/2000/751034","title":"How Nova Scotia General Practitioners Choose Antibiotics for the Empirical Treatment of Community‐Acquired Pneumonia","year":2000,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta; Queen Elizabeth II Health Sciences Centre","funders":"","keywords":"Nova scotia; Medicine; Community-acquired pneumonia; Pneumonia; Antibiotics; Streptococcus pneumoniae; Medical prescription; Population; Antibiotic resistance; Penicillin; Ciprofloxacin; Mycoplasma pneumoniae; Intensive care medicine; Family medicine; Internal medicine; Environmental health","score_opus":0.03534495891302771,"score_gpt":0.30422093395090644,"score_spread":0.26887597503787874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1434941232","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98026174,0.0015044302,0.0000834308,0.01715445,0.00047821685,0.0002534985,0.00018040377,0.000006891858,0.00007692894],"genre_scores_gemma":[0.99605304,0.000817311,0.0000145348695,0.002549489,0.00038320446,0.0000012466902,0.000029256003,0.000012784491,0.00013913281],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.99912274,0.00015583058,0.00031250124,0.00008454648,0.000061027036,0.00026335762],"domain_scores_gemma":[0.99835736,0.00030738674,0.00015197051,0.00015718161,0.00018780424,0.0008382981],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014481616,0.00014126356,0.00038953134,0.00015870103,0.00028084812,0.000024098903,0.00008213217,0.00017255968,0.00031842798],"category_scores_gemma":[0.0003445252,0.00008489098,0.00022822023,0.00012613845,0.0006844358,0.000044580673,0.0000054675215,0.00019334833,0.0000031364575],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00057945517,0.0027221139,0.7073567,0.00031934117,0.0028961995,0.00059822504,0.0018918186,0.000099907724,0.064888045,0.0002370213,0.019754672,0.19865651],"study_design_scores_gemma":[0.0073278057,0.0076570967,0.35332298,0.0002123346,0.00161194,0.014916198,0.0006866719,0.000061191735,0.00078812795,0.00011469805,0.6130291,0.00027181258],"about_ca_topic_score_codex":0.0022301478,"about_ca_topic_score_gemma":0.0074499655,"teacher_disagreement_score":0.5932745,"about_ca_system_score_codex":0.0001463017,"about_ca_system_score_gemma":0.0015101074,"threshold_uncertainty_score":0.41572556},"labels":[],"label_agreement":null},{"id":"W1447087673","doi":"10.1155/2006/325087","title":"Factors Associated with Length of Stay in Hospital for Suspected Community‐Acquired Pneumonia","year":2006,"lang":"en","type":"article","venue":"Canadian Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta","funders":"Pfizer Canada; Bayer Canada; Fondation pour la Recherche Médicale; Pfizer; Bristol-Myers Squibb Canada; Abbott Canada; Bristol-Myers Squibb","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Emergency medicine; Intensive care medicine; Community hospital; Internal medicine; Nursing","score_opus":0.034234080343575446,"score_gpt":0.2616148418020347,"score_spread":0.22738076145845926,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1447087673","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976261,0.000107750566,0.000024819343,0.00038529802,0.00020569116,0.00045840972,0.00012517761,0.000029443087,0.0010373085],"genre_scores_gemma":[0.99927723,0.0000018154923,0.000010520961,0.00035564933,0.00013417983,0.000015856134,0.000032128446,0.00004672343,0.00012586893],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982208,0.00024588767,0.00055887847,0.00015132756,0.0002535098,0.0005696084],"domain_scores_gemma":[0.99821997,0.00019317564,0.00029580446,0.00027361247,0.0004596467,0.0005577641],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00051202404,0.00023580494,0.000475048,0.00086008344,0.0004777862,0.000041363975,0.00016803124,0.00020531147,0.00006404211],"category_scores_gemma":[0.00036528314,0.00018828947,0.00015896131,0.00056543143,0.00019515115,0.00014265583,0.000010044519,0.0006496228,0.0000015082958],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042513366,0.0004412564,0.9798282,0.000029794579,0.00018151876,0.00016779534,0.00042259993,0.00008346555,0.017162666,0.00018147292,0.0012682757,0.00019046623],"study_design_scores_gemma":[0.0029295029,0.0019293408,0.9801836,0.00020599314,0.00009868357,0.000029951854,0.00081587496,0.000016235488,0.0014872686,0.00012576081,0.011936964,0.00024084275],"about_ca_topic_score_codex":0.006783704,"about_ca_topic_score_gemma":0.26772487,"teacher_disagreement_score":0.26094115,"about_ca_system_score_codex":0.0009661787,"about_ca_system_score_gemma":0.0019987528,"threshold_uncertainty_score":0.9998302},"labels":[],"label_agreement":null},{"id":"W146105626","doi":"10.1155/2004/461392","title":"Clinical Characteristics at Initial Presentation and Impact of Dual Therapy on the Outcome of Bacteremic <i>Streptococcus pneumoniae</i> Pneumonia in Adults","year":2004,"lang":"en","type":"article","venue":"Canadian Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":101,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"","keywords":"Medicine; Pneumonia; Azithromycin; Streptococcus pneumoniae; Community-acquired pneumonia; Internal medicine; Pneumonia severity index; Regimen; Ceftriaxone; Cohort; Antibiotics","score_opus":0.05409913074300555,"score_gpt":0.36331553605337036,"score_spread":0.3092164053103648,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W146105626","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99807006,0.00009051309,0.000001305585,0.00073166547,0.00026822608,0.00045900376,0.00010477927,0.000007034665,0.00026742704],"genre_scores_gemma":[0.99817634,0.00013132441,0.000002717794,0.0013489061,0.00028671022,0.000011346501,0.0000050051653,0.000025535408,0.000012112044],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978371,0.00024244556,0.0010943474,0.00021088574,0.00026862178,0.0003465443],"domain_scores_gemma":[0.9982232,0.00018962933,0.00048506627,0.00029564608,0.00020399972,0.000602467],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00066533353,0.00021165372,0.0004930347,0.00043065852,0.00016695772,0.000023032753,0.00011717413,0.00020165066,0.000106072264],"category_scores_gemma":[0.00031718676,0.00014074308,0.00026973817,0.00024670135,0.00030255746,0.00009747268,0.000020107356,0.00078398496,0.000008934491],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002470353,0.00013086293,0.9690852,0.000024385674,0.00008329736,0.0002514295,0.00030395028,0.000022329541,0.026423855,0.00003810513,0.00005890979,0.0033305932],"study_design_scores_gemma":[0.0031134663,0.0018978791,0.99229103,0.00028715274,0.000029296983,0.00028622465,0.00007026842,0.000005429284,0.00087415037,0.00003969672,0.000981274,0.00012414748],"about_ca_topic_score_codex":0.0016512066,"about_ca_topic_score_gemma":0.008238623,"teacher_disagreement_score":0.025549704,"about_ca_system_score_codex":0.0005102086,"about_ca_system_score_gemma":0.0014747661,"threshold_uncertainty_score":0.57393366},"labels":[],"label_agreement":null},{"id":"W1472692562","doi":"10.1093/pch/9.1.21","title":"Colonization and infection of the respiratory tract: What do we know?","year":2004,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Colonization; Medicine; Respiratory tract; Respiratory tract infections; Microbiology; Intensive care medicine; Biology; Respiratory system; Internal medicine","score_opus":0.014005076357739458,"score_gpt":0.2835483681468873,"score_spread":0.2695432917891478,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1472692562","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92085147,0.041001327,0.0002525476,0.035352718,0.0011556343,0.00091739895,0.000010141595,0.00008206972,0.00037671506],"genre_scores_gemma":[0.91551244,0.08049166,0.000023507437,0.0035091396,0.00041977692,0.000011582174,0.0000029478006,0.000017075252,0.00001188468],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989832,0.00008254603,0.00033651298,0.00018321721,0.00022152993,0.00019301046],"domain_scores_gemma":[0.999223,0.000048224992,0.00023755392,0.00023210292,0.000104720064,0.00015439636],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003541128,0.000110496,0.00021208909,0.00018306561,0.00034975028,0.000024024652,0.00004018316,0.000120724166,0.000007980121],"category_scores_gemma":[0.00012493001,0.00007969605,0.0000780311,0.00068105827,0.000075204174,0.00016765198,0.000028796529,0.00033233734,0.0000073485066],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020153133,0.0006564665,0.9450037,0.0005958097,0.000025427458,0.000002542291,0.0013044392,0.00028062327,0.00046551612,0.0027728353,0.00051601365,0.04835646],"study_design_scores_gemma":[0.0014787005,0.0005540719,0.9000532,0.0004372467,0.000069700436,0.000066829205,0.000083105704,0.0000065482122,0.00017745873,0.0005102469,0.0964651,0.00009775467],"about_ca_topic_score_codex":0.00008026073,"about_ca_topic_score_gemma":0.000066331944,"teacher_disagreement_score":0.09594909,"about_ca_system_score_codex":0.0001754164,"about_ca_system_score_gemma":0.0005382758,"threshold_uncertainty_score":0.32499105},"labels":[],"label_agreement":null},{"id":"W147956126","doi":"10.1155/2004/530645","title":"Blood Cultures in Ambulatory Patients Who Are Discharged from Emergency with Community‐Acquired Pneumonia","year":2004,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta","funders":"Alberta Heritage Foundation for Medical Research; University of Alberta; Pfizer","keywords":"Ambulatory; Pneumonia; Medicine; Community-acquired pneumonia; Intensive care medicine; Blood culture; Emergency medicine; Medical emergency; Internal medicine; Microbiology; Antibiotics; Biology","score_opus":0.005037595995447605,"score_gpt":0.22352484440368894,"score_spread":0.21848724840824135,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W147956126","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99675554,0.0015103784,0.000012703864,0.00096168683,0.00039509844,0.00014648937,0.00014415347,0.00001020696,0.00006374316],"genre_scores_gemma":[0.9978207,0.00038465433,0.0000051269203,0.0015467978,0.00016294663,0.000005107619,0.00004746663,0.0000155354,0.000011686382],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989246,0.00014050596,0.0004032471,0.00013585051,0.00008772416,0.00030807915],"domain_scores_gemma":[0.9981532,0.00003935533,0.00019699086,0.00013981182,0.00018123249,0.0012894112],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009864203,0.00017360687,0.0004575619,0.0002373391,0.00024589623,0.000012051789,0.00010013119,0.0002013198,0.00017397408],"category_scores_gemma":[0.00024873528,0.00011926909,0.00012429307,0.00017694902,0.00034041135,0.00006964046,0.000017040566,0.0005232786,0.0000032571654],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003858558,0.00043837918,0.99388224,0.000046628695,0.00022595316,0.0003796072,0.00045978284,0.000009757033,0.003947055,0.00002139912,0.00023049176,0.0003201001],"study_design_scores_gemma":[0.0052293227,0.0011519546,0.98786855,0.0007582817,0.00027004312,0.00082975393,0.0002858898,6.081876e-7,0.00006879413,0.00017136363,0.0032094677,0.00015598208],"about_ca_topic_score_codex":0.007812524,"about_ca_topic_score_gemma":0.06150786,"teacher_disagreement_score":0.053695332,"about_ca_system_score_codex":0.00013919311,"about_ca_system_score_gemma":0.0010886581,"threshold_uncertainty_score":0.99879456},"labels":[],"label_agreement":null},{"id":"W1482997191","doi":"10.1002/9780470035399.ch4","title":"Bacterial Infections of the Lung in Normal and Immunodeficient Patients","year":2006,"lang":"en","type":"article","venue":"Novartis Foundation symposium","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute","funders":"","keywords":"Immunology; Streptococcus pneumoniae; Biology; Microbiology; Innate immune system; Bacterial pneumonia; Pneumonia; Respiratory tract; Lung; Immune system; Respiratory system; Medicine; Antibiotics","score_opus":0.00554547793230356,"score_gpt":0.2346592529768299,"score_spread":0.22911377504452635,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1482997191","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99480265,0.0000074635686,0.00008736052,0.00057936937,0.0006373403,0.00028366563,0.0000058070336,0.000017228576,0.0035791127],"genre_scores_gemma":[0.99960667,0.000005057524,0.000009396103,0.000078166304,0.00006542519,0.000019187115,0.000026935675,0.0000072220905,0.00018196485],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99931127,0.00003806415,0.0002850773,0.00011283262,0.00014014375,0.00011260492],"domain_scores_gemma":[0.9996034,0.000020153138,0.00009391925,0.00015247597,0.00010985444,0.000020223268],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008647404,0.000072388895,0.00011143951,0.000117695985,0.00012042845,0.000019842644,0.000029103603,0.000053202562,0.00007738045],"category_scores_gemma":[0.000022585386,0.000054164222,0.000044788583,0.00030757417,0.00008203516,0.0001112593,0.00003330609,0.00009273859,0.000010145271],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017207149,0.00034140196,0.8370533,0.000019969475,0.0000076029837,2.9093448e-7,0.00011783137,0.00006505928,0.16166969,0.00039641003,0.00009593359,0.000215329],"study_design_scores_gemma":[0.0012190114,0.000104642575,0.985368,0.00003390841,0.000031615335,0.000012804468,0.000010213361,0.00014751867,0.004408437,0.000024235183,0.00858317,0.00005644471],"about_ca_topic_score_codex":0.00021549118,"about_ca_topic_score_gemma":0.000112064634,"teacher_disagreement_score":0.15726125,"about_ca_system_score_codex":0.00007406913,"about_ca_system_score_gemma":0.000062270374,"threshold_uncertainty_score":0.2208753},"labels":[],"label_agreement":null},{"id":"W149054809","doi":"10.1155/2002/697424","title":"Characterizing and Developing Strategies for the Treatment of Community‐Acquired Pneumonia at a Community Hospital","year":2002,"lang":"en","type":"article","venue":"Canadian Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia; Lions Gate Hospital; Vancouver Hospital and Health Sciences Centre","funders":"","keywords":"Medicine; Community-acquired pneumonia; Pneumonia severity index; Azithromycin; Pneumonia; Retrospective cohort study; Emergency medicine; Pediatrics; Antibiotics; Surgery; Internal medicine","score_opus":0.07691332573485482,"score_gpt":0.29069982839781716,"score_spread":0.21378650266296234,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W149054809","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941515,0.0012832043,0.000046574733,0.0033023343,0.00026220822,0.0004143544,0.000042791547,0.000016249904,0.00048079973],"genre_scores_gemma":[0.9967652,0.0003306014,0.000028384651,0.0025248865,0.00017958053,0.000038149283,0.0000033159606,0.000024565321,0.00010532676],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99881095,0.0002952739,0.00035145044,0.00007357619,0.00011691538,0.00035182264],"domain_scores_gemma":[0.99854964,0.00029786045,0.00017742481,0.00035004487,0.00018054944,0.00044449358],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00038865907,0.00018421041,0.00030478803,0.00022922027,0.0028979876,0.0000922549,0.00014927398,0.00010503504,0.00005832596],"category_scores_gemma":[0.00007193178,0.00012912939,0.00013872498,0.00014290743,0.00027549313,0.00014376229,0.000019750167,0.0003679859,0.000004921591],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002719024,0.0021031415,0.26763043,0.0008020906,0.0029834164,0.00053648796,0.13645332,0.000052355637,0.39622706,0.0021875,0.006045835,0.18470646],"study_design_scores_gemma":[0.0027073997,0.0045205066,0.41863576,0.00020063204,0.0002779685,0.000927001,0.01309102,0.00007343449,0.0016534141,0.00015835118,0.5574314,0.00032311009],"about_ca_topic_score_codex":0.002519518,"about_ca_topic_score_gemma":0.028393758,"teacher_disagreement_score":0.5513856,"about_ca_system_score_codex":0.0006812395,"about_ca_system_score_gemma":0.00054126396,"threshold_uncertainty_score":0.9984001},"labels":[],"label_agreement":null},{"id":"W1493021012","doi":"10.1007/bf03403566","title":"Method for Ascertaining Denominators for Evaluation of Population Coverage with Pneumococcal Vaccine","year":2003,"lang":"en","type":"article","venue":"Canadian Journal of Public Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Calgary; Alberta Health","funders":"","keywords":"Medicine; Vaccination; Estimation; Pneumococcal vaccine; Population; Pneumococcal infections; Immunization; Pneumococcal vaccination; Environmental health; Health care; Demography; Immunology; Streptococcus pneumoniae","score_opus":0.08392892116008556,"score_gpt":0.3907013175234532,"score_spread":0.30677239636336767,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1493021012","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.90586454,0.00021921379,0.08497883,0.007228753,0.0002962561,0.0011096812,0.000029461948,0.0000045149754,0.00026876613],"genre_scores_gemma":[0.9942189,0.00000476535,0.0049178777,0.00065711426,0.00011574376,0.000025619453,0.000018833076,0.000018840854,0.00002230273],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985424,0.00028966484,0.0005124191,0.00010221494,0.00021644727,0.0003368419],"domain_scores_gemma":[0.9970519,0.00019039706,0.0004794456,0.00010644875,0.001212571,0.0009592254],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006109971,0.00008908764,0.00034563444,0.000533129,0.00018698955,0.00001904561,0.000044679426,0.000068085814,0.000052866213],"category_scores_gemma":[0.0018880886,0.000070709946,0.00010274913,0.00025455587,0.000013556255,0.00013333015,9.134476e-7,0.00013161018,1.8826809e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013772972,0.00021008975,0.68813634,0.00073274126,0.0005409664,0.000011981542,0.002339417,0.002554879,0.0016275684,0.02324896,0.0016291718,0.27883017],"study_design_scores_gemma":[0.016673049,0.0074045067,0.7846089,0.00040795436,0.0005507306,0.0010987549,0.0018096478,0.0053917556,0.00029184148,0.0027198957,0.17873953,0.00030344698],"about_ca_topic_score_codex":0.0012238286,"about_ca_topic_score_gemma":0.011194305,"teacher_disagreement_score":0.27852672,"about_ca_system_score_codex":0.0008594567,"about_ca_system_score_gemma":0.011237486,"threshold_uncertainty_score":0.9943679},"labels":[],"label_agreement":null},{"id":"W1498480286","doi":"10.1111/j.1432-1033.2004.03996.x","title":"Characterization of novel structural features in the lipopolysaccharide of nondisease associated nontypeable <i>Haemophilus influenzae</i>","year":2004,"lang":"en","type":"article","venue":"European Journal of Biochemistry","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"Karolinska Institutet","keywords":"Haemophilus influenzae; Microbiology; Lipopolysaccharide; Chemistry; Biology; Immunology","score_opus":0.011469706617648331,"score_gpt":0.24856525332077742,"score_spread":0.2370955467031291,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1498480286","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998654,0.00008489819,0.000032701984,0.00046159155,0.000093662406,0.00006796076,0.000035385332,0.00000496188,0.00056485547],"genre_scores_gemma":[0.9993368,0.00001684849,0.00004148271,0.00038545125,0.00015862685,3.0014678e-7,0.0000132163,0.000012854274,0.00003444273],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99901116,0.000059157235,0.0004914325,0.00007778252,0.00024992175,0.00011055613],"domain_scores_gemma":[0.9989487,0.000019626377,0.00058463396,0.00016388689,0.00020860392,0.00007452856],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003531212,0.00010130484,0.00022779351,0.00008232138,0.000035211157,0.0000091551055,0.0001596444,0.00004059687,0.000009828133],"category_scores_gemma":[0.00024019637,0.00006817746,0.0001339053,0.00019848678,0.00008287001,0.00006354549,0.000020105557,0.00029427253,8.554138e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000089182555,0.00022887521,0.0059366142,0.00006315908,0.000055462322,0.00010785763,0.00030817045,0.0000862035,0.99298775,0.0000071552417,0.000020294836,0.00010929587],"study_design_scores_gemma":[0.002851136,0.0002546956,0.24811624,0.00045239134,0.000116823125,0.0005614331,0.00014268946,0.000004133776,0.7473311,0.000008127824,0.00008158019,0.000079657846],"about_ca_topic_score_codex":0.000005981732,"about_ca_topic_score_gemma":8.732511e-7,"teacher_disagreement_score":0.24565664,"about_ca_system_score_codex":0.0000478085,"about_ca_system_score_gemma":0.00017438209,"threshold_uncertainty_score":0.27801964},"labels":[],"label_agreement":null},{"id":"W1501499793","doi":"10.1186/1471-2458-5-110","title":"Improving rates of pneumococcal vaccination on discharge from a tertiary center medical teaching unit: A prospective intervention","year":2005,"lang":"en","type":"article","venue":"BMC Public Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Medicine; Vaccination; Pneumococcal vaccination; Prospective cohort study; Pediatrics; Emergency medicine; Intensive care unit; Tertiary care; Intensive care medicine; Streptococcus pneumoniae; Internal medicine; Antibiotics; Immunology","score_opus":0.032448636788050614,"score_gpt":0.35893034339235746,"score_spread":0.32648170660430686,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1501499793","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9681228,0.000062002226,0.011052342,0.018867062,0.00023327321,0.00067132124,0.000034605066,0.0001131587,0.0008434667],"genre_scores_gemma":[0.9972998,0.0000107249825,0.00026394727,0.0016651383,0.00047325683,0.00006272833,0.000098934135,0.000021925895,0.00010358174],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99796987,0.00038860508,0.0005906007,0.0003008993,0.00040845977,0.00034157958],"domain_scores_gemma":[0.9988729,0.0001317281,0.0002564499,0.0002330261,0.000101251404,0.0004046461],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011911122,0.0001502135,0.0003019752,0.0002840025,0.00018257309,0.000027779188,0.00009771691,0.00012647983,0.0002689361],"category_scores_gemma":[0.00089723873,0.00011595202,0.00014383333,0.0001636931,0.000037632533,0.00028397914,0.000053911248,0.00056913233,0.000031618274],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006135353,0.0027240454,0.8818453,0.00029336888,0.000066042616,0.000003248993,0.0013188575,0.0000025915717,0.002915526,0.0014367134,0.00019896161,0.109134],"study_design_scores_gemma":[0.0027070183,0.0006280138,0.9852169,0.00035656278,0.000013606048,0.000029377432,0.00036168555,0.004536875,0.00047623305,0.000042564585,0.005520996,0.00011017478],"about_ca_topic_score_codex":0.00039982164,"about_ca_topic_score_gemma":0.00058725866,"teacher_disagreement_score":0.109023824,"about_ca_system_score_codex":0.00035943938,"about_ca_system_score_gemma":0.0006585939,"threshold_uncertainty_score":0.4728386},"labels":[],"label_agreement":null},{"id":"W1502030983","doi":"10.1002/9781444303674.ch11","title":"Diagnosis and Treatment of Community‐Acquired Pneumonia","year":2008,"lang":"en","type":"other","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Dalhousie University","funders":"","keywords":"Pneumonia; Intensive care medicine; Community-acquired pneumonia; Medicine; Internal medicine","score_opus":0.047563454232049114,"score_gpt":0.30213266045019466,"score_spread":0.25456920621814555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1502030983","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.06716707,0.0019933393,0.0000036852123,0.00061092724,0.00015985576,0.0006256532,0.000056510657,0.00021632588,0.9291666],"genre_scores_gemma":[0.04491243,0.027061226,0.00006074629,0.00041724116,0.0001927817,0.00013619283,0.0000398372,0.00025496527,0.9269246],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99951565,0.00005838593,0.0001465579,0.00008842138,0.000085846295,0.00010513808],"domain_scores_gemma":[0.99938244,0.00005930185,0.000080666985,0.0003624415,0.000018380151,0.00009678146],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000017432645,0.00017894173,0.0004545585,0.00021562715,0.00006742241,0.0000025863587,0.00003137987,0.00020282119,0.0011024851],"category_scores_gemma":[0.000010396711,0.00012306175,0.00009925697,0.00008050961,0.00016725845,0.0000074315813,0.000016917376,0.00006642036,0.00003774237],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000032851072,0.0053962613,0.19675575,0.00060659245,0.0018294896,0.00016092665,0.0015638015,3.2759698e-7,0.0083872555,0.00011405486,0.70319515,0.081957534],"study_design_scores_gemma":[0.0008428904,0.0009665377,0.030756896,0.00014812355,0.00019982972,0.00010984279,0.00006340011,5.238595e-7,0.0004955821,0.0000026070065,0.9663077,0.00010604669],"about_ca_topic_score_codex":0.0012973498,"about_ca_topic_score_gemma":0.00045204326,"teacher_disagreement_score":0.26311257,"about_ca_system_score_codex":0.000037064627,"about_ca_system_score_gemma":0.000047987938,"threshold_uncertainty_score":0.99981064},"labels":[],"label_agreement":null},{"id":"W1507733254","doi":"10.1183/13993003/erj.44.suppl_58.p3817","title":"Clinical cure rates in patients treated with azithromycin (AZ) for lower respiratory infections (LRTI) caused by AZ-susceptible (AZ-S) and AZ-resistant (AZ-R) organisms: Analysis of phase 3 clinical trials","year":2014,"lang":"en","type":"article","venue":"European Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada); University of Manitoba; University of Toronto","funders":"","keywords":"Medicine; Azithromycin; Pneumonia; Internal medicine; Clinical trial; Antibiotics; Microbiology; Biology","score_opus":0.07753022246449597,"score_gpt":0.4132510771996952,"score_spread":0.33572085473519925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1507733254","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995754,0.00033278967,0.0010394914,0.00017789485,0.00054616714,0.0011922838,0.00022044811,0.000101811835,0.0006350801],"genre_scores_gemma":[0.9960839,0.00016609835,0.00009962445,0.0023486535,0.00087694405,0.00003000315,0.00005646212,0.0001654487,0.0001728604],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.98537916,0.0075959484,0.004632284,0.0009868222,0.0006784979,0.0007272607],"domain_scores_gemma":[0.9926609,0.0020825658,0.0022671071,0.00089314784,0.0010645816,0.0010317188],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.014732995,0.0006602448,0.0026899262,0.0013815123,0.0005870576,0.0001582342,0.00030918297,0.00040724123,0.00032039778],"category_scores_gemma":[0.0056413687,0.00048263383,0.001033368,0.0017443458,0.00073878287,0.00034032998,0.00009808896,0.0015699278,0.00003414744],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026517776,0.0052078343,0.9314084,0.00008104305,0.002740491,0.00013921215,0.00014596393,0.000060970375,0.04401113,0.000018810852,0.008482468,0.005051906],"study_design_scores_gemma":[0.041958917,0.034004223,0.7529954,0.00046524656,0.0060898135,0.000019989671,0.0001719483,0.00016324966,0.0013711489,0.000011299586,0.16196945,0.00077933655],"about_ca_topic_score_codex":0.000008896547,"about_ca_topic_score_gemma":0.000105220824,"teacher_disagreement_score":0.17841302,"about_ca_system_score_codex":0.00017278559,"about_ca_system_score_gemma":0.00054289674,"threshold_uncertainty_score":0.99976254},"labels":[],"label_agreement":null},{"id":"W1510541954","doi":"10.1046/j.1469-0691.8.s.2.7.x","title":"A critical assessment of published guidelines and other decision‐support systems for the antibiotic treatment of community‐acquired respiratory tract infections","year":2002,"lang":"en","type":"review","venue":"Clinical Microbiology and Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Intensive care medicine; Antibiotics; Respiratory tract infections; Medicine; Respiratory tract; Respiratory system; Microbiology; Internal medicine; Biology","score_opus":0.25735596233526853,"score_gpt":0.5072717483608182,"score_spread":0.2499157860255497,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1510541954","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0109295705,0.98135984,0.0012869975,0.00024137784,0.0025676826,0.002890235,0.000368471,0.00005940147,0.000296407],"genre_scores_gemma":[0.012476198,0.98648906,0.000066295244,0.00029427864,0.00038349873,0.00014599966,0.000051747087,0.00003597301,0.000056952587],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99636614,0.0010098069,0.002042013,0.00032527235,0.000047225938,0.00020956268],"domain_scores_gemma":[0.9911071,0.0070854747,0.00068084657,0.0005514972,0.00045918315,0.000115898576],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017210571,0.0003384235,0.002110042,0.00028965285,0.0003639733,0.000028674633,0.00007495203,0.0009488165,0.00004494822],"category_scores_gemma":[0.0024943277,0.0001918334,0.0007126445,0.00023250154,0.0010768524,0.00007372599,0.00005193143,0.00044621923,0.0000030613053],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007110401,0.0093264375,0.058181524,0.0119603295,0.0024676376,0.0000034653983,0.00006551344,0.0000058879737,0.0004206953,0.0008398712,0.00492424,0.91173327],"study_design_scores_gemma":[0.001292782,0.00815009,0.0060971114,0.0023457245,0.0032437698,0.0005796994,0.000019665018,0.00003473314,0.0000026698385,0.00002026999,0.9780529,0.00016058121],"about_ca_topic_score_codex":0.000071621755,"about_ca_topic_score_gemma":0.000021747905,"teacher_disagreement_score":0.9731287,"about_ca_system_score_codex":0.000071856804,"about_ca_system_score_gemma":0.00028141466,"threshold_uncertainty_score":0.78227395},"labels":[],"label_agreement":null},{"id":"W1517851310","doi":"10.3810/pgm.2005.10.1699","title":"Update on community-acquired pneumonia","year":2005,"lang":"en","type":"review","venue":"Postgraduate Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Community-acquired pneumonia; Pneumonia; Intensive care medicine; Context (archaeology); Antibiotic therapy; Antibiotics; Combination therapy; Antibiotic resistance; Internal medicine; Microbiology","score_opus":0.1547107604188966,"score_gpt":0.419837450341905,"score_spread":0.2651266899230084,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1517851310","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00008252641,0.97342813,0.000006781756,0.009471821,0.0011551693,0.0015098513,0.00007438109,0.00041521314,0.013856105],"genre_scores_gemma":[0.0002097678,0.9872555,0.000020282658,0.005873767,0.0021850422,0.0001708566,0.00088812027,0.00020532224,0.003191309],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9958968,0.00081620895,0.0013257498,0.0005667467,0.000697188,0.0006973183],"domain_scores_gemma":[0.9964178,0.00048650676,0.00054796546,0.0017453894,0.00018554393,0.0006168014],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00081843557,0.0010295926,0.0038315053,0.0009869846,0.0005198015,0.000022802327,0.00045526036,0.0005457939,0.0004474642],"category_scores_gemma":[0.00044798196,0.00065642234,0.0007508034,0.0009447137,0.00052667194,0.00006582352,0.00013212537,0.00213905,0.0026386015],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023139872,0.00042104322,0.000010014721,0.00690354,0.0004775554,0.00023525654,0.00013778979,3.0153439e-7,0.00006305572,0.00018017247,0.0063720546,0.9851761],"study_design_scores_gemma":[0.0011280045,0.0015649882,0.00011376077,0.031046987,0.0034496055,0.001531984,0.00003474154,0.0000032786513,0.000002045438,0.00003254583,0.96059144,0.00050060224],"about_ca_topic_score_codex":0.00007986531,"about_ca_topic_score_gemma":0.000022089078,"teacher_disagreement_score":0.98467547,"about_ca_system_score_codex":0.00038718924,"about_ca_system_score_gemma":0.00038200815,"threshold_uncertainty_score":0.9995887},"labels":[],"label_agreement":null},{"id":"W1518464227","doi":"10.1128/jcm.38.11.4298-4299.2000","title":"Macrolide and Fluoroquinolone (Levofloxacin) Resistances among <b> <i>Streptococcus pneumoniae</i> Strains: Significant Trends from the SENTRY Antimicrobial Surveillance Program (North America, 1997–1999) </b>","year":2000,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Streptococcus pneumoniae; Broth microdilution; Levofloxacin; Microbiology; Trovafloxacin; Ciprofloxacin; Antimicrobial; Medicine; Clinical microbiology; Antibacterial agent; Biology; Antibiotics; Minimum inhibitory concentration","score_opus":0.024776405311268585,"score_gpt":0.317210092800388,"score_spread":0.2924336874891194,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1518464227","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.77426094,0.0017056133,0.000007729482,0.21893203,0.0018695053,0.0006552222,0.002274524,0.00008472656,0.00020969524],"genre_scores_gemma":[0.34700668,0.019228214,0.0004817962,0.59677446,0.031349782,0.00008337571,0.0028992598,0.00028515578,0.0018912749],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99294996,0.0015541876,0.0034283933,0.0009073319,0.00024266662,0.00091746316],"domain_scores_gemma":[0.99390155,0.0017667218,0.0028830506,0.0007991123,0.0003275908,0.00032200152],"candidate_categories":["metaepi_narrow","sts","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0007805827,0.00076344394,0.0029324824,0.00027059577,0.00026915994,0.000109376604,0.00065229356,0.0017765297,0.00023483306],"category_scores_gemma":[0.00039696653,0.00047605133,0.0012889982,0.00044309275,0.0027539344,0.00010997419,0.00012266371,0.006607709,0.000035864014],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004265227,0.0005478029,0.20630875,0.00009384692,0.0013965922,0.0022931448,0.000084467305,0.000005380816,0.023330132,2.3588939e-7,0.70545566,0.060057487],"study_design_scores_gemma":[0.0020401129,0.0017044613,0.18460713,0.00034653736,0.0005873907,0.0007782031,0.000027593156,0.00000245866,0.000079486264,0.000009402943,0.8094078,0.00040946843],"about_ca_topic_score_codex":0.00009449728,"about_ca_topic_score_gemma":0.00020552632,"teacher_disagreement_score":0.4272543,"about_ca_system_score_codex":0.000077318415,"about_ca_system_score_gemma":0.0005956572,"threshold_uncertainty_score":0.99996},"labels":[],"label_agreement":null},{"id":"W1526790442","doi":"10.1007/s00330-002-1490-3","title":"Pneumonia: high-resolution CT findings in 114 patients","year":2003,"lang":"en","type":"article","venue":"European Radiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":115,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver Hospital and Health Sciences Centre","funders":"","keywords":"Medicine; Neuroradiology; Interventional radiology; Pneumonia; Radiology; Ultrasound; Medical physics; Internal medicine; Neurology","score_opus":0.010612736616710817,"score_gpt":0.2306800953338905,"score_spread":0.2200673587171797,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1526790442","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9677171,0.000049696082,0.00004567952,0.00031546378,0.000573627,0.00017770358,0.0000034792683,0.00006493223,0.031052278],"genre_scores_gemma":[0.9981606,0.000030192617,0.00004569933,0.0010035242,0.00008539059,0.0000057175303,0.00001868385,0.000025886528,0.00062427873],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986623,0.00047228663,0.0002541345,0.0002485539,0.00007435404,0.0002883555],"domain_scores_gemma":[0.9995773,0.000042691783,0.000044814093,0.00020568623,0.000032363085,0.00009717204],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028448968,0.0001238658,0.0002217672,0.00019639557,0.00008049066,0.0000054079087,0.000059206737,0.000038663,0.00009700667],"category_scores_gemma":[0.0002712449,0.000106658044,0.000058545003,0.00020285248,0.00008633486,0.000040650284,0.00001886113,0.00027228345,0.0005500246],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022980428,0.00028901923,0.9710707,0.000016283491,0.000030575837,0.0004982398,0.0001360237,0.00007460765,0.022401156,0.0021975923,0.0024251605,0.0008376413],"study_design_scores_gemma":[0.0015521005,0.00038454126,0.8957824,0.000019565587,0.000018946575,0.00036095304,0.000011478024,0.000010175037,0.00021633506,0.000041156887,0.1014989,0.000103440296],"about_ca_topic_score_codex":0.0000094001325,"about_ca_topic_score_gemma":0.0000061745823,"teacher_disagreement_score":0.09907374,"about_ca_system_score_codex":0.00009409119,"about_ca_system_score_gemma":0.000033725264,"threshold_uncertainty_score":0.70696366},"labels":[],"label_agreement":null},{"id":"W153191742","doi":"10.1007/978-1-4615-1267-7_36","title":"NMR and Molecular Modeling of Complex Carbohydrates and Carbohydrate-Protein Interactions. Applications to Anti-Bacteria Vaccines","year":2001,"lang":"en","type":"article","venue":"Advances in experimental medicine and biology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Biological Sciences","funders":"","keywords":"Neisseria meningitidis; Epitope; Polysaccharide; Chemistry; Streptococcus pneumoniae; Biochemistry; Molecular model; Streptococcus; Bacteria; Microbiology; Biology; Antigen; Genetics","score_opus":0.03543473382955558,"score_gpt":0.3704281652485664,"score_spread":0.33499343141901083,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W153191742","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9891358,0.007533507,0.0006638756,0.0016899591,0.000060181796,0.00041963384,0.0000036478937,0.000017178652,0.0004762429],"genre_scores_gemma":[0.9976719,0.0011395623,0.00032293083,0.00063500245,0.00007153069,0.00012639901,0.000016157665,0.000008386393,0.000008123775],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99927604,0.000031767177,0.00026603846,0.00024947344,0.00003652748,0.00014015973],"domain_scores_gemma":[0.99966514,0.00003335259,0.000049515853,0.00011144987,0.000036868434,0.000103669394],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005251433,0.00013055035,0.00032529313,0.00020596021,0.000058089106,0.0000032782361,0.00003116438,0.000049831986,0.000019084144],"category_scores_gemma":[0.000022180078,0.000097773736,0.000014602877,0.00019681861,0.00018832789,0.0000750514,0.000048909464,0.00008330054,4.9609343e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004337163,0.00006617361,0.021490427,0.000028721863,0.000014789839,0.0000064602305,0.0002503146,0.000026812717,0.975099,0.00045088882,0.0000018493063,0.0025211687],"study_design_scores_gemma":[0.017042104,0.0132458415,0.058948435,0.0024212725,0.0004575725,0.0025987981,0.02244652,0.025792327,0.683052,0.007052299,0.16487345,0.0020693792],"about_ca_topic_score_codex":0.00014210104,"about_ca_topic_score_gemma":0.000034913606,"teacher_disagreement_score":0.29204702,"about_ca_system_score_codex":0.000015832411,"about_ca_system_score_gemma":0.000009657938,"threshold_uncertainty_score":0.3987097},"labels":[],"label_agreement":null},{"id":"W1532085376","doi":"10.1155/2000/457147","title":"Summary of Canadian Guidelines for the Initial Management of Community‐Acquired Pneumonia: An Evidence‐Based Update by the Canadian Infectious Disease Society and the Canadian Thoracic Society","year":2000,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University","funders":"","keywords":"Etiology; Community-acquired pneumonia; Medicine; Streptococcus pneumoniae; Intensive care medicine; Pneumonia; Infectious disease (medical specialty); Disease; Family medicine; Pathology; Internal medicine; Antibiotics","score_opus":0.04697404410005588,"score_gpt":0.33491413311306906,"score_spread":0.28794008901301316,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1532085376","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8693064,0.014859656,0.000043204473,0.11158381,0.0006255775,0.0013954521,0.0018601721,0.000013597624,0.00031211905],"genre_scores_gemma":[0.9650035,0.003744434,0.000012840189,0.030807497,0.00022755834,0.000045218854,0.000085243635,0.000025651034,0.000048041784],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977664,0.00050129823,0.0007106875,0.000186147,0.00016828378,0.00066721125],"domain_scores_gemma":[0.9943724,0.0005799286,0.000244836,0.00041014946,0.0006883962,0.003704281],"candidate_categories":["sts"],"consensus_categories":["sts"],"category_scores_codex":[0.0015172728,0.00027174377,0.0005309706,0.00032722286,0.0023806782,0.000075675795,0.00038592634,0.00028163884,0.00024408009],"category_scores_gemma":[0.0005441701,0.00015369146,0.0004423148,0.00045932876,0.0028622628,0.000112814574,0.000021090256,0.00060669053,0.0000010975756],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001360533,0.00065458275,0.35415718,0.0024639159,0.008935026,0.0007895285,0.006059388,0.00089003786,0.0011969716,0.0029139346,0.38905618,0.23152274],"study_design_scores_gemma":[0.009808181,0.0018715691,0.18751521,0.0020165807,0.0056228237,0.0027611451,0.003255716,0.0015229207,0.00005613618,0.0009549534,0.7837992,0.000815562],"about_ca_topic_score_codex":0.9733327,"about_ca_topic_score_gemma":0.99804205,"teacher_disagreement_score":0.39474303,"about_ca_system_score_codex":0.00054423115,"about_ca_system_score_gemma":0.0143246,"threshold_uncertainty_score":0.99985135},"labels":[],"label_agreement":null},{"id":"W1536295097","doi":"10.1002/9780470473283.ch4","title":"Carbohydrate‐Based Antibacterial Vaccines","year":2008,"lang":"en","type":"other","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Neisseria meningitidis; Glycoconjugate; Streptococcus pneumoniae; Microbiology; Salmonella typhi; Haemophilus influenzae; Neisseria; Biology; Immune system; Conjugate vaccine; Virology; Bacteria; Immunology; Escherichia coli; Antibiotics; Bioinformatics; Biochemistry; Gene","score_opus":0.016385122388484167,"score_gpt":0.26874609409363265,"score_spread":0.2523609717051485,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1536295097","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0020607766,0.000104125786,0.000048176506,0.00039310392,0.0013178341,0.00032655758,0.000023239516,0.0006401717,0.995086],"genre_scores_gemma":[0.005562105,0.00020345405,0.00009964048,0.0013180927,0.002130824,0.00001823839,0.00009105139,0.00040411102,0.9901725],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9993372,0.000017326412,0.00013968226,0.00021489296,0.00012174731,0.00016914884],"domain_scores_gemma":[0.99946594,0.000008946488,0.00006488535,0.00031793272,0.000026797461,0.00011546829],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000015175847,0.00021067975,0.00035910326,0.00032516939,0.000040092782,0.000007887071,0.000046054527,0.00032433408,0.0096894745],"category_scores_gemma":[0.000012881192,0.00014997697,0.00014180696,0.00014599541,0.000037670616,0.000008984921,0.000010772632,0.00014771959,0.000574556],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013433237,0.00013665528,0.0032227822,0.000093268696,0.00011356612,0.00016510673,0.000004074546,3.28164e-7,0.042558238,0.000016729178,0.95344174,0.00023405206],"study_design_scores_gemma":[0.00083352235,0.00011147006,0.0013965552,0.00011890587,0.000095561874,0.000056434044,0.0000014579821,0.0000084275125,0.0009406366,6.8064065e-7,0.9962664,0.00016994691],"about_ca_topic_score_codex":0.0001708792,"about_ca_topic_score_gemma":0.00009247691,"teacher_disagreement_score":0.042824633,"about_ca_system_score_codex":0.00002022537,"about_ca_system_score_gemma":0.00019850083,"threshold_uncertainty_score":0.9912158},"labels":[],"label_agreement":null},{"id":"W1558942575","doi":"10.4049/jimmunol.0902841","title":"IL-7–Dependent B Lymphocytes Are Essential for the Anti-polysaccharide Response and Protective Immunity to <i>Streptococcus</i>  <i>pneumoniae</i>","year":2010,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"National Institute of Allergy and Infectious Diseases; National Cancer Institute","keywords":"Streptococcus pneumoniae; Immunology; Immunization; Immunity; Immune system; Biology; Pneumococcal infections; Vaccination; Microbiology","score_opus":0.010388695072279864,"score_gpt":0.27074017875921147,"score_spread":0.2603514836869316,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1558942575","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9759788,0.0004895106,0.00070124853,0.020886723,0.00090425066,0.0009785201,0.00002110871,0.000019199904,0.000020670075],"genre_scores_gemma":[0.9982297,0.00021683316,0.00003292567,0.0010664079,0.0002775697,0.00006137658,2.7702697e-7,0.00002200052,0.0000929137],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99862874,0.00036181413,0.0004313448,0.00012219147,0.00017147834,0.00028441363],"domain_scores_gemma":[0.9972767,0.0011883758,0.0004332409,0.00059938384,0.00040743075,0.00009484867],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017238106,0.0001761076,0.00037978304,0.0001608518,0.00058119674,0.000031439784,0.00042914203,0.00014783375,0.000019727724],"category_scores_gemma":[0.0014524143,0.00009021628,0.00015609556,0.00017778928,0.00038798284,0.00008792113,0.0001840799,0.000965885,0.000009808307],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027648408,0.00011997446,0.002496901,0.000011008134,0.0003524191,0.00001906352,0.00081948255,0.000020566102,0.99163336,0.000026614529,0.00021156385,0.001524205],"study_design_scores_gemma":[0.0045054886,0.0031709787,0.30952984,0.00012808148,0.00075427827,0.008159318,0.0033762625,0.00002919107,0.64910835,0.0004209047,0.020574993,0.00024229294],"about_ca_topic_score_codex":0.000048547216,"about_ca_topic_score_gemma":0.000064637345,"teacher_disagreement_score":0.34252498,"about_ca_system_score_codex":0.00006024286,"about_ca_system_score_gemma":0.00032391417,"threshold_uncertainty_score":0.44701543},"labels":[],"label_agreement":null},{"id":"W1561565964","doi":"10.4212/cjhp.v58i4.317","title":"An Overview of Pneumonia in Community and Hospital Settings","year":2005,"lang":"en","type":"article","venue":"The Canadian Journal of Hospital Pharmacy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Health Sciences Centre; University of Manitoba","funders":"","keywords":"Medicine; Pneumonia; Gynecology; Community-acquired pneumonia; Intensive care medicine; Internal medicine","score_opus":0.03569598347686193,"score_gpt":0.338927869738561,"score_spread":0.30323188626169906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1561565964","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9773657,0.002097764,7.162492e-7,0.019790303,0.00020000816,0.00015923871,0.000012658077,0.0000042335237,0.00036940235],"genre_scores_gemma":[0.99809426,0.00026402585,0.000027936163,0.0013963436,0.00018449625,0.0000015318852,0.0000012225909,0.000013428409,0.000016770373],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990656,0.0001509494,0.00037008096,0.000059772217,0.00013941704,0.0002142263],"domain_scores_gemma":[0.9989162,0.00005200602,0.00020302011,0.00018836097,0.00015516915,0.000485228],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006107899,0.00011024293,0.0002654824,0.00020259414,0.00021429395,0.000027476295,0.0001968608,0.000034209483,0.000056525765],"category_scores_gemma":[0.00008238329,0.000078132594,0.00008539415,0.00019133004,0.00022882524,0.00027002988,0.000013925244,0.0007525455,0.0000037539219],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005294892,0.0008885319,0.9274098,0.00020068674,0.00022501871,0.00037162294,0.017291086,0.00012160999,0.01964046,0.00039358457,0.002216871,0.031187778],"study_design_scores_gemma":[0.0029794932,0.0026025916,0.93321204,0.00042544096,0.00019969104,0.0007002497,0.0014174317,0.0001552429,0.00250161,0.00033649485,0.055223994,0.00024571226],"about_ca_topic_score_codex":0.0078102327,"about_ca_topic_score_gemma":0.016829863,"teacher_disagreement_score":0.053007122,"about_ca_system_score_codex":0.00013308779,"about_ca_system_score_gemma":0.00063265156,"threshold_uncertainty_score":0.9987968},"labels":[],"label_agreement":null},{"id":"W1566542367","doi":"10.1093/pch/16.4.233","title":"Update on the success of the pneumococcal conjugate vaccine","year":2011,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Canadian Paediatric Society","funders":"","keywords":"Serotype; Pneumococcal conjugate vaccine; Pneumococcal disease; Vaccination; Medicine; Conjugate vaccine; Streptococcus pneumoniae; Pneumonia; Otitis; Pneumococcal pneumonia; Virology; Pneumococcal infections; Antibiotics; Immunology; Immunization; Biology; Microbiology; Internal medicine; Immune system","score_opus":0.02376789686164123,"score_gpt":0.2705780878090574,"score_spread":0.24681019094741616,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1566542367","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9165827,0.0006023212,0.000030273643,0.06744526,0.0009536165,0.0010201973,0.00004197174,0.00007114012,0.013252518],"genre_scores_gemma":[0.9824987,0.0010491076,0.00001102306,0.015927972,0.00040931185,0.000019389674,0.000004189279,0.000021272906,0.000059042977],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99859184,0.0001765338,0.00042075277,0.0002041964,0.000276898,0.00032977504],"domain_scores_gemma":[0.9987327,0.00012225118,0.00027803445,0.00058965327,0.00009371614,0.00018365598],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005733482,0.00015242702,0.0002923431,0.00010525278,0.00042478443,0.0000066259868,0.00023110995,0.00007958997,0.00014746349],"category_scores_gemma":[0.00014227128,0.000074010386,0.0001669118,0.00055603025,0.00006811469,0.00003262698,0.00007050029,0.0005706341,0.00007732644],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016475431,0.0011099374,0.95534307,0.0003374011,0.00013008482,0.000011529984,0.0017741936,0.000013147906,0.00059214834,0.029295143,0.007351099,0.0038775154],"study_design_scores_gemma":[0.0008323862,0.0004791558,0.96454203,0.00007138887,0.00007829205,0.000043595017,0.000058954145,0.000021498576,0.0007708367,0.0003838026,0.032614313,0.00010374825],"about_ca_topic_score_codex":0.00012466195,"about_ca_topic_score_gemma":0.000056693207,"teacher_disagreement_score":0.065915994,"about_ca_system_score_codex":0.000057671103,"about_ca_system_score_gemma":0.00029048236,"threshold_uncertainty_score":0.32671413},"labels":[],"label_agreement":null},{"id":"W1566775846","doi":"10.1155/2000/412616","title":"Summary of Canadian Guidelines for the Initial Management of Community-Acquired Pneumonia: An Evidence-Based Update by the Canadian Infectious Diseases Society and the Canadian Thoracic Society","year":2000,"lang":"en","type":"article","venue":"Canadian Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"St. Michael's Hospital; University of British Columbia; Dalhousie University; Queen Elizabeth II Health Sciences Centre; McMaster University","funders":"Pfizer Canada; Abbott Laboratories; Bayer Corporation; Pfizer; Bristol-Myers Squibb Canada; Bristol-Myers Squibb","keywords":"Medicine; Etiology; Community-acquired pneumonia; Streptococcus pneumoniae; Pneumonia; Intensive care medicine; Infectious disease (medical specialty); Disease; Family medicine; Pathology; Antibiotics; Internal medicine","score_opus":0.09820736796362949,"score_gpt":0.35494133119793303,"score_spread":0.25673396323430353,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1566775846","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8109575,0.015575062,0.00004418044,0.16147625,0.00093812245,0.0040940815,0.0034300042,0.000050345127,0.0034344492],"genre_scores_gemma":[0.9301031,0.0011505495,0.00003766012,0.06792508,0.00037537346,0.00013016716,0.00004862787,0.000058982,0.00017043256],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99669904,0.000758113,0.00083118305,0.0002458487,0.00044433537,0.001021503],"domain_scores_gemma":[0.99428314,0.0004377433,0.00027222763,0.00089886633,0.0009820567,0.0031259607],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0028800566,0.000375231,0.00050885906,0.0005269745,0.007144112,0.00027707146,0.0007366346,0.00028935322,0.00026167807],"category_scores_gemma":[0.00023018787,0.0002288562,0.00054809835,0.0009294597,0.0016943172,0.00027492776,0.000022122493,0.0009555856,0.000004275339],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005811763,0.0002310958,0.10877329,0.0010175025,0.0049788137,0.00040555125,0.0068858825,0.0032067087,0.0007551744,0.0019794481,0.68073606,0.19044931],"study_design_scores_gemma":[0.0029453277,0.00046097575,0.05526915,0.00059229776,0.0013925941,0.00034109902,0.0035128389,0.0010963646,0.00007836466,0.0002642386,0.93358123,0.00046551297],"about_ca_topic_score_codex":0.9929722,"about_ca_topic_score_gemma":0.99980265,"teacher_disagreement_score":0.2528452,"about_ca_system_score_codex":0.0017590129,"about_ca_system_score_gemma":0.019632202,"threshold_uncertainty_score":0.99414843},"labels":[],"label_agreement":null},{"id":"W1569727747","doi":"10.1007/0-306-46834-4_9","title":"Nursing Home-Acquired Pneumonia","year":2002,"lang":"en","type":"book-chapter","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sunnybrook Health Science Centre; Health Sciences Centre; University of Toronto","funders":"","keywords":"Pneumonia; Nursing; Nursing homes; Medicine; Intensive care medicine; Internal medicine","score_opus":0.03258832759980096,"score_gpt":0.2701998273582061,"score_spread":0.23761149975840512,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1569727747","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00026778618,0.00039130848,0.0000641133,0.0018435938,0.00074366655,0.00033291843,0.000012667887,0.00034537827,0.99599856],"genre_scores_gemma":[0.012195632,0.000371352,0.000052726988,0.0013530579,0.00068446336,0.000008301424,0.00002549512,0.000106812455,0.98520213],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","domain_scores_codex":[0.99872804,0.0000068528157,0.00033222008,0.0003713276,0.00029009822,0.00027144013],"domain_scores_gemma":[0.999029,0.000025709523,0.000108012144,0.00049364707,0.000095172705,0.00024850242],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000039052855,0.00035703517,0.0005416238,0.00028971554,0.00013189644,0.00002303281,0.00007313454,0.0005147918,0.0083028115],"category_scores_gemma":[0.0000088162,0.00029417765,0.00032480012,0.000037846585,0.00018336248,0.000043186847,0.000019734944,0.0003241391,0.0027025032],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013532776,0.0011777377,0.0015490557,0.00084894325,0.0020937647,0.0031464556,0.00072181947,0.00000815144,0.071250334,0.49907154,0.21504125,0.20495561],"study_design_scores_gemma":[0.0005599734,0.00032734248,0.0010755573,0.00099108,0.00041340373,0.0007449372,0.0000068346744,0.000027925033,0.00009003503,0.0031112214,0.9922124,0.0004392717],"about_ca_topic_score_codex":0.0000022261786,"about_ca_topic_score_gemma":0.0000016085197,"teacher_disagreement_score":0.7771712,"about_ca_system_score_codex":0.00019409094,"about_ca_system_score_gemma":0.0000854199,"threshold_uncertainty_score":0.99995106},"labels":[],"label_agreement":null},{"id":"W1573556272","doi":"10.1093/pch/8.10.616","title":"Community-acquired pneumonia in children","year":2003,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Streptococcus pneumoniae; Medicine; Mycoplasma pneumoniae; Tachypnea; Pneumonia; Community-acquired pneumonia; Chlamydia; Antibiotics; Pediatrics; Pneumococcal conjugate vaccine; Intensive care medicine; Chlamydophila pneumoniae; Internal medicine; Immunology; Chlamydiaceae","score_opus":0.01745231447554252,"score_gpt":0.2888441240499336,"score_spread":0.2713918095743911,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1573556272","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9776908,0.0016736704,0.00006034859,0.0078067114,0.00033149784,0.0008164415,0.000021659487,0.00015722484,0.01144164],"genre_scores_gemma":[0.9891248,0.0012113572,0.00012933977,0.009108564,0.00022930503,0.000027103773,0.000041567117,0.000036329264,0.0000916662],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99791145,0.00056622154,0.0004960883,0.00022708948,0.00024652813,0.00055260496],"domain_scores_gemma":[0.9988133,0.000084277686,0.00014483885,0.0005160148,0.000051070423,0.00039050484],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010265848,0.00019914692,0.00042316303,0.00042994303,0.0005686459,0.000016962726,0.000115787065,0.00014154172,0.000047164318],"category_scores_gemma":[0.00027492188,0.00018418916,0.000117807154,0.0009825431,0.000057965626,0.00006749464,0.000034817935,0.00087358983,0.00010375202],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000075555886,0.0006318801,0.99540925,0.000073481584,0.000021877635,0.0000061787646,0.0005497421,0.00001545549,0.00010649374,0.0009460136,0.0007681172,0.0014639663],"study_design_scores_gemma":[0.0016201896,0.0003748723,0.9733697,0.000046927333,0.000026208689,0.0002991355,0.00011967257,0.0000082420975,0.000027123466,0.00019547748,0.023743024,0.00016941133],"about_ca_topic_score_codex":0.00040719696,"about_ca_topic_score_gemma":0.00015063027,"teacher_disagreement_score":0.022974906,"about_ca_system_score_codex":0.0002503752,"about_ca_system_score_gemma":0.0004923533,"threshold_uncertainty_score":0.7511017},"labels":[],"label_agreement":null},{"id":"W1573857015","doi":"10.1186/1471-2296-7-30","title":"\"I really should've gone to the doctor\": older adults and family caregivers describe their experiences with community-acquired pneumonia","year":2006,"lang":"en","type":"article","venue":"BMC Family Practice","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph; St. Joseph’s Healthcare Hamilton; McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Pneumonia; Family medicine; Gerontology; Family caregivers; Internal medicine","score_opus":0.03911303627999566,"score_gpt":0.2871475206317863,"score_spread":0.24803448435179062,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1573857015","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98008734,0.00055135414,0.0004728684,0.0025739258,0.00028103282,0.00096820504,0.00001982383,0.00016993888,0.014875491],"genre_scores_gemma":[0.9912008,0.00008528192,0.00059611734,0.006989213,0.00020759182,0.00024703192,0.000019140223,0.000044038214,0.0006107512],"study_design_codex":"qualitative","study_design_gemma":"qualitative","domain_scores_codex":[0.9977992,0.00060965045,0.0003326098,0.00038930477,0.00044322485,0.0004260143],"domain_scores_gemma":[0.99735194,0.0010483405,0.00018915009,0.0008123803,0.0003687983,0.0002294074],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005663511,0.00033655576,0.00035328025,0.00013049408,0.00094970065,0.00015677133,0.0002611106,0.00013758663,0.000009188038],"category_scores_gemma":[0.00030869464,0.00020209796,0.00007938403,0.00053224684,0.0003477899,0.0005292945,0.00012517809,0.00050628965,0.000037653233],"study_design_candidate":"qualitative","study_design_consensus":"qualitative","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.010308456,0.0055205184,0.087405816,0.0008608317,0.0010671142,0.00081165694,0.5410235,0.0006604861,0.2994591,0.0009957328,0.03462235,0.017264454],"study_design_scores_gemma":[0.002352073,0.0014140334,0.33288133,0.0003716336,0.00030482528,0.0005581703,0.5145996,0.000067492,0.0006327308,0.000005968614,0.14638038,0.00043169467],"about_ca_topic_score_codex":0.0043704505,"about_ca_topic_score_gemma":0.0014381504,"teacher_disagreement_score":0.2988264,"about_ca_system_score_codex":0.00010073076,"about_ca_system_score_gemma":0.0002691205,"threshold_uncertainty_score":0.82413155},"labels":[],"label_agreement":null},{"id":"W1574932854","doi":"10.1111/j.1532-5415.2005.53264.x","title":"Community‐Acquired Pneumonia in Patients Receiving Home Care","year":2005,"lang":"en","type":"article","venue":"Journal of the American Geriatrics Society","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Pneumonia; Comorbidity; Emergency department; Emergency medicine; Prospective cohort study; Pediatrics; Internal medicine","score_opus":0.009729200468638349,"score_gpt":0.26209567565445485,"score_spread":0.2523664751858165,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1574932854","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99619585,0.00015294812,0.000016425625,0.0029173854,0.0003679061,0.00012658727,0.000004307285,0.000013253864,0.00020532841],"genre_scores_gemma":[0.9967133,0.00024373339,0.00043285897,0.0021845,0.00034507696,0.0000016842653,9.978348e-7,0.000020062238,0.000057788136],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998619,0.00024510274,0.00047575473,0.00007551099,0.00036105997,0.00022357774],"domain_scores_gemma":[0.99841386,0.00009261256,0.0007512339,0.0003178037,0.0003083865,0.00011607434],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040995766,0.00012798104,0.000394884,0.00009865032,0.00025786427,0.00002188429,0.00027038335,0.000055668876,0.0000061167384],"category_scores_gemma":[0.00014877858,0.00008584038,0.0005107659,0.0008762757,0.00016524905,0.00011648659,0.00010212464,0.0005685062,0.0000038214575],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004514297,0.0003676651,0.9729403,0.00003268154,0.00008166688,0.0000023660173,0.005530596,0.0002654696,0.0073334617,0.0000012183651,0.0023408227,0.011058589],"study_design_scores_gemma":[0.0012935953,0.0005003925,0.9856032,0.000059095215,0.000101868056,0.00005412521,0.0028618814,0.00002857022,0.000106864485,0.000010088408,0.009278001,0.000102276186],"about_ca_topic_score_codex":0.000048002938,"about_ca_topic_score_gemma":0.000018650513,"teacher_disagreement_score":0.012662921,"about_ca_system_score_codex":0.0005936651,"about_ca_system_score_gemma":0.0002063476,"threshold_uncertainty_score":0.35004693},"labels":[],"label_agreement":null},{"id":"W1576672270","doi":"10.1111/j.1532-5415.2004.52007.x","title":"Outcomes and Costs Among Seniors Requiring Hospitalization for Community‐Acquired Pneumonia in Alberta","year":2003,"lang":"en","type":"article","venue":"Journal of the American Geriatrics Society","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Health; University of Alberta; Capital District Health Authority","funders":"","keywords":"Medicine; Comorbidity; Mortality rate; Pneumonia; Emergency medicine; Retrospective cohort study; Demography; Pediatrics; Gerontology; Internal medicine","score_opus":0.011569761941120346,"score_gpt":0.2800872863392854,"score_spread":0.26851752439816506,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1576672270","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99674517,0.0000535625,0.0004832174,0.0020803714,0.00029245872,0.00025285385,0.0000028162774,0.000006836693,0.00008269664],"genre_scores_gemma":[0.9981081,0.00020318266,0.00052811386,0.0009486098,0.000055498625,0.000005727685,6.380017e-7,0.000019886942,0.00013024516],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989232,0.00021159324,0.00041644464,0.00008023829,0.00018209034,0.00018646564],"domain_scores_gemma":[0.9984656,0.00038652166,0.0006816844,0.00021111188,0.00015566115,0.00009943735],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00070546125,0.00012288563,0.00039222013,0.00008045212,0.00025876806,0.000028753315,0.00011254904,0.00005516715,0.0000014291485],"category_scores_gemma":[0.0007321697,0.000081881735,0.00033234947,0.00055568037,0.00019788438,0.00012293254,0.00003731027,0.00029047165,1.9669062e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001560212,0.00011548994,0.99078697,0.000026597358,0.000094150935,0.0000014336035,0.0014010837,0.00007944688,0.0066824467,0.000045693625,0.00035797872,0.00039312532],"study_design_scores_gemma":[0.0014624804,0.00039344135,0.9927815,0.000063319705,0.00018167979,0.00013325686,0.0025263475,0.00016941535,0.00025083587,0.0001256747,0.001788881,0.00012317722],"about_ca_topic_score_codex":0.00037378792,"about_ca_topic_score_gemma":0.000096727,"teacher_disagreement_score":0.006431611,"about_ca_system_score_codex":0.00028321682,"about_ca_system_score_gemma":0.00010555007,"threshold_uncertainty_score":0.33390403},"labels":[],"label_agreement":null},{"id":"W1579434571","doi":"10.2165/00151829-200605060-00009","title":"A Review of New Fluoroquinolones","year":2006,"lang":"en","type":"review","venue":"Treatments in Respiratory Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":83,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Manitoba","funders":"","keywords":"Gatifloxacin; Moxifloxacin; Medicine; Levofloxacin; Gemifloxacin; Ciprofloxacin; Chronic bronchitis; Streptococcus pneumoniae; Respiratory tract infections; Pharmacology; Community-acquired pneumonia; Pneumonia; Intensive care medicine; Internal medicine; Antibiotics; Microbiology; Respiratory system","score_opus":0.160405219300709,"score_gpt":0.4512480902019646,"score_spread":0.2908428709012556,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1579434571","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000127951325,0.9897725,0.0000031960083,0.0002301065,0.00038783235,0.0024144242,0.000029225139,0.000079831734,0.0070700743],"genre_scores_gemma":[9.695319e-7,0.99438757,0.000025209727,0.0018956183,0.0006299884,0.00024512195,0.00015760292,0.00009445219,0.0025634693],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9960764,0.00027673348,0.0020988982,0.00062536576,0.0004901778,0.0004324341],"domain_scores_gemma":[0.9975023,0.00018231032,0.0008435941,0.0010575748,0.000111795576,0.00030241444],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00040239474,0.00076420495,0.004983478,0.0009979504,0.000045247343,0.000002750635,0.00022600104,0.00048167765,0.00049265334],"category_scores_gemma":[0.00031906986,0.00048064103,0.0006719838,0.0013385961,0.0002811274,0.000052630585,0.0000572828,0.0005535584,0.00012675999],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008272745,0.0003931097,0.00033267023,0.17771089,0.00042773588,0.00032863265,0.000019616886,8.810264e-8,0.000010154167,0.000024239838,0.036772918,0.78397167],"study_design_scores_gemma":[0.0013494742,0.0007680671,0.00024207118,0.34156916,0.0030962375,0.00011446226,0.0000030755275,4.706067e-8,0.0000016798399,0.000007567857,0.65266263,0.00018550795],"about_ca_topic_score_codex":0.00015367394,"about_ca_topic_score_gemma":0.000020434025,"teacher_disagreement_score":0.7837862,"about_ca_system_score_codex":0.00046612576,"about_ca_system_score_gemma":0.0013699806,"threshold_uncertainty_score":0.9997645},"labels":[],"label_agreement":null},{"id":"W1581049186","doi":"10.1007/bf03404802","title":"A cost-effectiveness analysis of pneumococcal vaccination in street-involved, HIV-infected patients.","year":2000,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver Hospital and Health Sciences Centre; University of British Columbia","funders":"","keywords":"Medicine; Christian ministry; Medical prescription; Cohort; Vaccination; Pharmacy; Pneumococcal vaccine; Health care; Cost effectiveness; Cost-effectiveness analysis; Emergency medicine; Intensive care medicine; Family medicine; Pediatrics; Internal medicine; Immunology; Nursing; Streptococcus pneumoniae; Risk analysis (engineering)","score_opus":0.029206956224081065,"score_gpt":0.2783291312747716,"score_spread":0.24912217505069054,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1581049186","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954037,0.00001580991,0.000032547952,0.00007319884,0.000048129383,0.0016877629,0.00003464146,0.000055506145,0.0026486695],"genre_scores_gemma":[0.99816716,0.000018871382,0.0000029181663,0.00006641628,0.000020885278,0.0014611991,0.00017165497,0.000012812571,0.0000780761],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987609,0.00015971831,0.00033735327,0.00024597364,0.00021353722,0.0002825393],"domain_scores_gemma":[0.9992918,0.0001154099,0.00008241834,0.00023504086,0.00014308248,0.00013228267],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026812396,0.0001336723,0.00043491632,0.0007474879,0.000039978982,0.000007999503,0.000055139426,0.00011107825,0.00024422674],"category_scores_gemma":[0.00013685992,0.00011751237,0.00018889637,0.0020115592,0.000028260136,0.00010647508,0.000013232405,0.0001539639,0.000011366258],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010232132,0.0007433935,0.90083504,0.000038262475,0.00031938194,0.0000055806822,0.000032919354,0.0005205589,0.0002567929,0.000017096065,0.000009152268,0.0971195],"study_design_scores_gemma":[0.002287184,0.00007091336,0.99414974,0.000012509748,0.00067147636,3.8755817e-7,0.000018536597,0.0004438563,0.00075619743,0.000008537023,0.0014746332,0.0001060036],"about_ca_topic_score_codex":0.00008288093,"about_ca_topic_score_gemma":0.00050854613,"teacher_disagreement_score":0.097013496,"about_ca_system_score_codex":0.00020938173,"about_ca_system_score_gemma":0.000034390712,"threshold_uncertainty_score":0.47920153},"labels":[],"label_agreement":null},{"id":"W1582481146","doi":"10.1155/2002/698146","title":"Oral Fluoroquinolones in the Treatment of Pneumonia, Bronchitis and Sinusitis","year":2002,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Bayer (Canada); Health Sciences Centre; University of Toronto; Sunnybrook Health Science Centre","funders":"","keywords":"Medicine; Levofloxacin; Moxifloxacin; Tolerability; Gatifloxacin; Sinusitis; Internal medicine; Pneumonia; Bronchitis; Chronic bronchitis; Placebo; Antibiotics; Intensive care medicine; Adverse effect; Surgery","score_opus":0.010390840174913917,"score_gpt":0.23402549648668056,"score_spread":0.22363465631176663,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1582481146","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98708594,0.008739581,0.0000029314926,0.0036422538,0.00020860539,0.000108127206,0.000039495244,0.0000029325224,0.0001701077],"genre_scores_gemma":[0.9951261,0.0036167088,0.0000026187365,0.0011069693,0.000116286734,0.000003391505,0.0000028799604,0.0000052049095,0.00001983023],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99930525,0.00009766672,0.00026732497,0.000089563815,0.00004554381,0.0001946285],"domain_scores_gemma":[0.9991878,0.0000987048,0.000082783234,0.000073265415,0.000052444302,0.0005049918],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000070272545,0.00009633147,0.0003153903,0.00021698834,0.00008154236,0.000008715004,0.000041925592,0.00011340048,0.00023012659],"category_scores_gemma":[0.00011847117,0.00005857646,0.000083981795,0.00010561127,0.00046864952,0.000024474155,0.0000037821032,0.00013000969,0.0000016922628],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017805583,0.0004291619,0.9051965,0.000047832295,0.00014658703,0.0018371729,0.0011289896,0.0000010264038,0.0047123004,0.00013124131,0.00066580484,0.085685596],"study_design_scores_gemma":[0.004098491,0.0066027064,0.8516357,0.00021930083,0.0003309909,0.038933624,0.00032275336,0.000017330098,0.000062032836,0.00015462015,0.0974769,0.00014556796],"about_ca_topic_score_codex":0.0023741135,"about_ca_topic_score_gemma":0.013250658,"teacher_disagreement_score":0.09681109,"about_ca_system_score_codex":0.000069905465,"about_ca_system_score_gemma":0.0002724296,"threshold_uncertainty_score":0.73941785},"labels":[],"label_agreement":null},{"id":"W1590564380","doi":"10.1002/ppul.20424","title":"Corticosteroids and complicated <i>Mycoplasma pneumoniae</i> infection","year":2006,"lang":"en","type":"letter","venue":"Pediatric Pulmonology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Library science; Medicine; Columbia university; Citation; Family medicine; Media studies; Sociology; Computer science","score_opus":0.014849171009093727,"score_gpt":0.2450520675393246,"score_spread":0.23020289653023088,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1590564380","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.54056436,0.0010002484,0.00010730887,0.45028803,0.0018451005,0.00096349214,0.00009094614,0.0006383771,0.0045021167],"genre_scores_gemma":[0.1594847,0.003583893,0.000066135384,0.8106775,0.016234899,0.0004480576,0.0016292249,0.00028841975,0.0075871604],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976336,0.00013313786,0.0006141406,0.0007372483,0.00022699805,0.0006548742],"domain_scores_gemma":[0.9986811,0.00017393386,0.0003338278,0.0005289636,0.000146231,0.00013590496],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.00008563329,0.00048654558,0.0008260242,0.0007432158,0.00020010148,0.000040880695,0.000100471494,0.0018376923,0.00006190857],"category_scores_gemma":[0.00005098468,0.0004512562,0.00018698834,0.00048147907,0.00018883999,0.00006743374,0.000106262436,0.0024427315,0.00040323564],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008739485,0.000096519936,0.4122908,0.00029446927,0.00006686634,0.0006886252,0.0000070135293,0.000001334331,0.0010253732,0.0000041274657,0.5847423,0.00077377644],"study_design_scores_gemma":[0.0007904298,0.0005006914,0.09671503,0.000017151862,0.0009552485,0.0070930184,7.4872446e-7,0.000036182344,0.000015116126,0.00014925402,0.8933165,0.00041061224],"about_ca_topic_score_codex":0.00018638813,"about_ca_topic_score_gemma":0.000026114229,"teacher_disagreement_score":0.38107967,"about_ca_system_score_codex":0.00014556585,"about_ca_system_score_gemma":0.00018025633,"threshold_uncertainty_score":0.9998587},"labels":[],"label_agreement":null},{"id":"W1591759896","doi":"10.1111/j.1532-5415.2009.02259.x","title":"Environmental Risk Factors for Community‐Acquired Pneumonia Hospitalization in Older Adults","year":2009,"lang":"en","type":"article","venue":"Journal of the American Geriatrics Society","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University; Health Sciences Centre; University of Alberta; Sunnybrook Health Science Centre; University of Waterloo; University of Manitoba","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Pneumonia; Odds ratio; Confidence interval; Population; Community-acquired pneumonia; Risk factor; Internal medicine; Environmental health","score_opus":0.007450931231640506,"score_gpt":0.25109115348328337,"score_spread":0.24364022225164286,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1591759896","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976339,0.0000862973,0.0005810478,0.0011052283,0.00024126236,0.0003062492,0.000022268987,0.0000103335915,0.000013447899],"genre_scores_gemma":[0.99797976,0.00056125596,0.00029859954,0.0009600303,0.00015766158,0.0000026002717,0.0000034466445,0.000014326434,0.000022323182],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989222,0.00016107855,0.00040919858,0.00008158214,0.00024127353,0.00018464007],"domain_scores_gemma":[0.9985641,0.0001483838,0.00091237633,0.00022632103,0.000056217294,0.000092557595],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037716696,0.00013056629,0.0003303735,0.00007028108,0.00027469848,0.000016484471,0.00017326488,0.00005925269,0.000004337393],"category_scores_gemma":[0.00015740459,0.00008556188,0.00057214085,0.0004180763,0.00012871159,0.000095431555,0.00002704486,0.00038361197,5.931619e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012988597,0.0011625593,0.9557046,0.000023906663,0.00012546885,0.0000024635763,0.008120339,0.0003945056,0.027270464,0.0000038408302,0.0016007089,0.005461247],"study_design_scores_gemma":[0.0014447017,0.0010526876,0.9908984,0.00003832415,0.00015888651,0.00004182427,0.004926481,0.00025167502,0.00035968565,0.00006386778,0.0006664049,0.000097098506],"about_ca_topic_score_codex":0.000045443026,"about_ca_topic_score_gemma":0.0000025009351,"teacher_disagreement_score":0.035193752,"about_ca_system_score_codex":0.00028413284,"about_ca_system_score_gemma":0.00007546599,"threshold_uncertainty_score":0.34891123},"labels":[],"label_agreement":null},{"id":"W1596134099","doi":"10.1103/physrevc.61.051901","title":"Matter-induced<mml:math xmlns:mml=\"http://www.w3.org/1998/Math/MathML\" display=\"inline\"><mml:mi>ρ</mml:mi></mml:math>-<mml:math xmlns:mml=\"http://www.w3.org/1998/Math/MathML\" display=\"inline\"><mml:mi>δ</mml:mi></mml:math>mixing: A source of dileptons","year":2000,"lang":"lv","type":"article","venue":"Physical Review C","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Mathematics; Algorithm; Computer science","score_opus":0.021583505773491444,"score_gpt":0.2754329813896415,"score_spread":0.25384947561615007,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1596134099","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9823051,0.0057097324,0.00033159056,0.0024226303,0.0020253845,0.00046389215,0.0006502488,0.0005200584,0.005571326],"genre_scores_gemma":[0.97570395,0.0104056215,0.00046232593,0.005095334,0.0043349974,0.0016211258,0.000892426,0.00085280475,0.00063143263],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.98767793,0.0006101246,0.003259073,0.002618901,0.002927626,0.0029063441],"domain_scores_gemma":[0.98967737,0.0017106767,0.0026859026,0.0038997552,0.00033368552,0.0016926094],"candidate_categories":["metaepi_narrow","sts","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow","research_integrity"],"category_scores_codex":[0.0018181996,0.0019869958,0.0019032983,0.000391457,0.0018005394,0.0006526423,0.0020346595,0.0017397999,0.00050943077],"category_scores_gemma":[0.0015730807,0.00218586,0.0037910868,0.001703865,0.0017015263,0.0012477833,0.0014647078,0.003313212,0.01805463],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045302243,0.0025264584,0.000055337357,0.008146293,0.0016224957,0.0008817976,0.0015524958,0.0003007747,0.011423616,0.96422875,0.0017515542,0.007057392],"study_design_scores_gemma":[0.0027808775,0.0030607493,0.0005556937,0.01713323,0.006282918,0.0018670171,0.0008037323,0.86003333,0.008848964,0.00049972686,0.09562968,0.0025040905],"about_ca_topic_score_codex":0.00067873794,"about_ca_topic_score_gemma":0.00016498382,"teacher_disagreement_score":0.963729,"about_ca_system_score_codex":0.00010125651,"about_ca_system_score_gemma":0.0015662628,"threshold_uncertainty_score":0.9995561},"labels":[],"label_agreement":null},{"id":"W1603935467","doi":"10.1111/j.1469-0691.2000.tb02047.x","title":"The new oral cephalosporins in community-acquired infections","year":2000,"lang":"en","type":"review","venue":"Clinical Microbiology and Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Cephalosporin; Medicine; Intensive care medicine; Antibiotics; Microbiology; Biology","score_opus":0.09930517452393291,"score_gpt":0.42777114914379966,"score_spread":0.32846597461986676,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1603935467","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.008466524,0.98552024,0.00001657495,0.0003575796,0.0022651008,0.0011279164,0.000023456669,0.00014861867,0.0020739827],"genre_scores_gemma":[0.00055617257,0.99712324,0.0000045713477,0.0004203514,0.00047983023,0.00006141287,0.00016064278,0.000030931096,0.00116285],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9963901,0.0017169731,0.0011947567,0.00034036068,0.000024362655,0.0003334318],"domain_scores_gemma":[0.9976234,0.0013923766,0.00027628467,0.00048691113,0.00004111359,0.00017991943],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001091008,0.00034799846,0.0014503258,0.00023776527,0.0007240343,0.00003118947,0.00009955416,0.0012446227,0.00010032355],"category_scores_gemma":[0.00043703127,0.00021946154,0.000593789,0.00047839957,0.0006816496,0.00006514869,0.00008572232,0.0022128087,0.00022168792],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002645216,0.00055206957,0.007336989,0.00067601976,0.00024353724,0.0000063201564,0.000020842968,3.27982e-7,0.000014836306,0.00007177625,0.002409508,0.9886413],"study_design_scores_gemma":[0.000705375,0.0009899739,0.00438489,0.0016493059,0.00062838034,0.0010817227,0.000004347018,4.887593e-7,4.9656126e-7,0.00008972429,0.9902645,0.00020080579],"about_ca_topic_score_codex":0.00023143199,"about_ca_topic_score_gemma":0.0011349204,"teacher_disagreement_score":0.9884405,"about_ca_system_score_codex":0.00010230687,"about_ca_system_score_gemma":0.00046331712,"threshold_uncertainty_score":0.96136755},"labels":[],"label_agreement":null},{"id":"W1604539329","doi":"10.1080/10158782.2008.11441311","title":"Management of community-acquired pneumonia in adults","year":2008,"lang":"en","type":"article","venue":"Southern African Journal of Epidemiology and Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Pneumonia; Community-acquired pneumonia; Medicine; Intensive care medicine; Internal medicine","score_opus":0.04737634423798447,"score_gpt":0.3090429397507587,"score_spread":0.2616665955127742,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1604539329","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969305,0.0002574695,0.00035466044,0.00064236653,0.0001452103,0.00009658961,0.0000026998619,0.00000897803,0.00156154],"genre_scores_gemma":[0.99855936,0.0009900181,0.00010825755,0.00021547136,0.0000552086,0.000003147322,0.0000013584386,0.0000073851825,0.000059771144],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99832505,0.00072321575,0.00066936953,0.000066100634,0.000061429266,0.00015482816],"domain_scores_gemma":[0.9989498,0.0002653299,0.00045984783,0.00013182143,0.00009802953,0.000095151016],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015444526,0.00009461514,0.00047358128,0.00027084074,0.00012548882,7.052607e-7,0.000041419367,0.00010604688,0.000022548034],"category_scores_gemma":[0.00028986085,0.00007168122,0.000118778284,0.00021169723,0.0002957006,0.00005630716,0.000021924488,0.00036747943,0.000004718547],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030462173,0.00027849432,0.9895752,0.000120286066,0.00013807723,0.00005812617,0.0025908803,0.00007223092,0.0018665686,0.00018028087,0.00003688294,0.00477833],"study_design_scores_gemma":[0.0014483202,0.0013291088,0.99125683,0.00032897177,0.000072106755,0.0014734181,0.0018946466,0.000027623944,0.00006650267,0.00079011807,0.0012474476,0.00006489858],"about_ca_topic_score_codex":0.00015060278,"about_ca_topic_score_gemma":0.000023261377,"teacher_disagreement_score":0.004713432,"about_ca_system_score_codex":0.000040095492,"about_ca_system_score_gemma":0.00003025797,"threshold_uncertainty_score":0.29230756},"labels":[],"label_agreement":null},{"id":"W1606030392","doi":"10.1155/2006/195464","title":"Pneumonia Severity Index in the Immunocompromised","year":2006,"lang":"en","type":"article","venue":"Canadian Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Canadian Thoracic Society","keywords":"Medicine; Immunosuppression; Concordance; Internal medicine; Pneumonia; Logistic regression","score_opus":0.01539466030827859,"score_gpt":0.2532271798153101,"score_spread":0.23783251950703152,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1606030392","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9786467,0.00036310137,0.000018556315,0.0033329679,0.0003175239,0.00030658994,0.000008309359,0.000020310166,0.016985923],"genre_scores_gemma":[0.98873174,0.0000065484114,0.000007966842,0.010377137,0.00061541965,0.000015475856,0.0000022862523,0.000020335892,0.00022307843],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984011,0.00020825959,0.0004179727,0.00016909797,0.00028478913,0.0005187868],"domain_scores_gemma":[0.9990134,0.000040821495,0.00009904911,0.00032560606,0.00011362581,0.00040746032],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006937601,0.00016937032,0.00022594305,0.0005485327,0.0005034591,0.00011825725,0.0002303518,0.00015547556,0.0002079349],"category_scores_gemma":[0.000054543314,0.000121016754,0.00014988991,0.00048900075,0.000117065465,0.00012219802,0.0000095131245,0.0010549148,0.00007502689],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048599843,0.00019922311,0.93818766,0.000026474696,0.000052186522,0.004783365,0.00033798485,0.00013060044,0.0359992,0.0005899633,0.014733661,0.00491107],"study_design_scores_gemma":[0.0008955213,0.00007815511,0.6830874,0.000032181928,0.00001726216,0.0016304274,0.00013977403,0.000020974401,0.00006440624,0.0002560323,0.31366926,0.00010860894],"about_ca_topic_score_codex":0.010014597,"about_ca_topic_score_gemma":0.08781893,"teacher_disagreement_score":0.29893562,"about_ca_system_score_codex":0.00053186895,"about_ca_system_score_gemma":0.0019033222,"threshold_uncertainty_score":0.9965778},"labels":[],"label_agreement":null},{"id":"W1625385476","doi":"10.25011/cim.v32i1.5088","title":"Methicillin-resistant S. aureus colonization in Mexican children attending day care centres","year":2009,"lang":"en","type":"article","venue":"Clinical and investigative medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Pulsed-field gel electrophoresis; Carriage; Staphylococcus aureus; Medicine; Methicillin-resistant Staphylococcus aureus; SCCmec; Colonization; Microbiology; Pediatrics; Biology; Genotype; Bacteria","score_opus":0.09219861883303551,"score_gpt":0.3642022850460406,"score_spread":0.2720036662130051,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1625385476","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9387972,0.0010306875,0.000052301737,0.057666585,0.0002639092,0.0004199315,0.000008080999,0.000060438764,0.0017009074],"genre_scores_gemma":[0.9890298,0.0003834632,0.00010576486,0.009680246,0.0005750401,0.000006836986,0.000070218615,0.000010893549,0.00013769788],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981943,0.0002716052,0.00067541766,0.00038715499,0.00023038973,0.00024115332],"domain_scores_gemma":[0.9989039,0.00019596377,0.00013965025,0.00019194758,0.00015057498,0.00041799137],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00058876374,0.00018998348,0.00058321375,0.00016559861,0.00014096597,0.000008195645,0.00006809057,0.00018592185,0.000048609476],"category_scores_gemma":[0.002576447,0.00012654146,0.00006687296,0.00043830823,0.0029980282,0.00007860024,0.000024867204,0.0005826729,0.0000068707222],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042630476,0.00013857105,0.95909816,0.0000327262,0.000056868976,0.00004637929,0.0019839425,0.0000061151,0.026532149,0.0049016373,0.00081148214,0.006349347],"study_design_scores_gemma":[0.0022370622,0.0018496435,0.9854738,0.0005563351,0.0001414514,0.000007534215,0.00053227134,0.00004989502,0.0006707573,0.003756803,0.0045868177,0.00013758888],"about_ca_topic_score_codex":0.00007465903,"about_ca_topic_score_gemma":0.00008723987,"teacher_disagreement_score":0.05023268,"about_ca_system_score_codex":0.0000501448,"about_ca_system_score_gemma":0.00012110714,"threshold_uncertainty_score":0.99971527},"labels":[],"label_agreement":null},{"id":"W1670741509","doi":"10.1111/j.1742-4658.2007.06060.x","title":"Role of different moieties from the lipooligosaccharide molecule in biological activities of the <i>Moraxella catarrhalis</i> outer membrane","year":2007,"lang":"en","type":"article","venue":"FEBS Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Defence Research and Development Canada","funders":"National Institutes of Health","keywords":"Bacterial outer membrane; Linker; Mutant; Lipid A; Moraxella (Branhamella) catarrhalis; Moraxella catarrhalis; Mutagenesis; Chemistry; Biochemistry; Moiety; Biology; Stereochemistry; Bacteria; Escherichia coli; Genetics","score_opus":0.015422071865522597,"score_gpt":0.2510212053617101,"score_spread":0.23559913349618747,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1670741509","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970262,0.00042459762,0.000039147453,0.0014091758,0.00024301752,0.00011492091,0.000025514391,0.000005830133,0.0007116021],"genre_scores_gemma":[0.9989362,0.00018337404,0.000009932806,0.0005418933,0.00025656392,0.0000024048265,0.0000020385437,0.0000071796303,0.000060428145],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99903566,0.000106520594,0.00035635012,0.00008754793,0.00023119414,0.00018274794],"domain_scores_gemma":[0.99930173,0.00019729526,0.00018494084,0.00020435611,0.00005044386,0.00006124555],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028270893,0.000108442335,0.00025854292,0.00006336785,0.00009761605,0.000011757414,0.00016984598,0.00008877761,0.0000876849],"category_scores_gemma":[0.000077152086,0.000047079327,0.00017924566,0.00012004045,0.00019247567,0.000038912956,0.00005783716,0.0004642386,0.0000016306167],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008670822,0.00015914327,0.21982229,0.000007691209,0.00006078335,0.0000148701065,0.0011602688,0.000013797786,0.77798635,0.000064157,0.00016957989,0.00045434784],"study_design_scores_gemma":[0.00057009864,0.00014581466,0.49339473,0.00012735883,0.00005331969,0.00016318256,0.0017780301,0.000012385901,0.5016713,0.00046153626,0.0015594875,0.000062721934],"about_ca_topic_score_codex":0.00013934114,"about_ca_topic_score_gemma":0.00017906993,"teacher_disagreement_score":0.27631506,"about_ca_system_score_codex":0.00003417861,"about_ca_system_score_gemma":0.000058986436,"threshold_uncertainty_score":0.20169115},"labels":[],"label_agreement":null},{"id":"W1681064524","doi":"10.1155/2008/136708","title":"Necrotizing Pneumonia Complicated by Early and Late Pneumatoceles","year":2008,"lang":"en","type":"article","venue":"Canadian Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children","funders":"","keywords":"Medicine; Empyema; Pneumonia; Surgery; Pleural effusion; Internal medicine","score_opus":0.02964842216800006,"score_gpt":0.24839118927366577,"score_spread":0.2187427671056657,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1681064524","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940907,0.0010309551,0.000022668932,0.0015908087,0.00018595891,0.00021972986,0.000027464985,0.00006180872,0.0027699072],"genre_scores_gemma":[0.99256706,0.00014343655,0.000022086251,0.006531358,0.00017345819,0.000010390006,0.0000033722981,0.000045398578,0.00050345843],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984486,0.0000868143,0.0004019062,0.0002600501,0.00022428541,0.00057834375],"domain_scores_gemma":[0.99744624,0.00003323295,0.00013035856,0.00023804791,0.00018554428,0.001966576],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020205103,0.00022692382,0.0003426101,0.00044974172,0.0012260659,0.0000874347,0.000096642114,0.00017711597,0.00013019584],"category_scores_gemma":[0.00006504894,0.00020668167,0.00010877807,0.0002888422,0.0002636434,0.00018036272,0.000018183197,0.00075425516,0.00009997561],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021931106,0.000051774357,0.6200694,0.00002911328,0.0001335075,0.0033846367,0.0003612707,0.000006375425,0.3614669,0.000080306134,0.012005096,0.0023896864],"study_design_scores_gemma":[0.00092534086,0.00029590147,0.60547704,0.00007703704,0.00004213304,0.010519439,0.000035530935,0.000024514036,0.00070417003,0.00003867813,0.38161758,0.0002426616],"about_ca_topic_score_codex":0.0021482897,"about_ca_topic_score_gemma":0.0023832421,"teacher_disagreement_score":0.3696125,"about_ca_system_score_codex":0.00025565174,"about_ca_system_score_gemma":0.00107629,"threshold_uncertainty_score":0.9430031},"labels":[],"label_agreement":null},{"id":"W1688220985","doi":"10.1139/w2012-083","title":"Immune response and protective efficacy of S9 ribosomal protein of <i>Streptococcus pneumoniae</i> in a model of sepsis","year":2012,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Immunogenicity; Streptococcus pneumoniae; Ribosomal protein; Microbiology; Biology; Immune system; Antibody; Antigen; Recombinant DNA; Vaccination; Virology; Gene; Immunology; Ribosome; Antibiotics","score_opus":0.015441282447245209,"score_gpt":0.24755418236210736,"score_spread":0.23211289991486214,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1688220985","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998014,0.00071374216,0.0000311123,0.00053408265,0.00006296389,0.00050342956,0.00008407615,0.000001543491,0.000055102984],"genre_scores_gemma":[0.99976397,0.0000071593563,0.000102370155,0.000047411904,0.000025908226,0.000008690982,0.0000013271962,0.000011140401,0.000032009164],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987158,0.00022995961,0.0006513617,0.0000893287,0.00003825745,0.0002752451],"domain_scores_gemma":[0.9987853,0.00009405289,0.00048005334,0.00014902184,0.00022961503,0.00026196765],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00058140774,0.00011569081,0.0005543433,0.0005629269,0.000029396035,0.0000013792917,0.00008647924,0.00017503247,0.000019776953],"category_scores_gemma":[0.0003874702,0.000095503725,0.00012873115,0.00020246647,0.00038250475,0.000056225508,0.000015229944,0.0003173374,7.267896e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045967317,0.00011755816,0.056540854,0.00007419558,0.00008658875,0.000017133494,0.000978279,0.000072468356,0.9413625,0.000025140796,0.000015263002,0.00025034635],"study_design_scores_gemma":[0.0039445423,0.0022504858,0.2795909,0.0007585128,0.00013193653,0.0010524974,0.0003659573,0.000025644935,0.7107852,0.00005369731,0.0008799588,0.00016063527],"about_ca_topic_score_codex":0.00065274665,"about_ca_topic_score_gemma":0.0010000183,"teacher_disagreement_score":0.23057726,"about_ca_system_score_codex":0.00010148297,"about_ca_system_score_gemma":0.0013694174,"threshold_uncertainty_score":0.38945287},"labels":[],"label_agreement":null},{"id":"W169459663","doi":"10.2165/00003495-200161040-00003","title":"Review of Macrolides and Ketolides","year":2001,"lang":"en","type":"review","venue":"Drugs","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":301,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Manitoba","funders":"","keywords":"Roxithromycin; Ketolide; Telithromycin; Microbiology; Clarithromycin; Erythromycin; Streptococcus pneumoniae; Macrolide Antibiotics; Azithromycin; Haemophilus influenzae; Antibiotics; Medicine; Chemistry; Biology","score_opus":0.043274835764260965,"score_gpt":0.3807761641455251,"score_spread":0.3375013283812642,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W169459663","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000034055859,0.98739684,0.0000011644872,0.00013200917,0.00009176462,0.00053429895,0.00001964799,0.00002971032,0.011791162],"genre_scores_gemma":[0.0000011199049,0.9977495,0.0000114502245,0.0009931194,0.00014296618,0.00004820011,0.000026370712,0.000026918724,0.0010003487],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9990243,0.00006782078,0.00047406403,0.00018846184,0.00010922014,0.00013617777],"domain_scores_gemma":[0.99922806,0.000089848276,0.00022292187,0.0002951028,0.00006146197,0.00010259789],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017469388,0.00020840071,0.0016484311,0.00014283191,0.000033359775,0.000004787057,0.00005615696,0.00014417463,0.00013780834],"category_scores_gemma":[0.000101426675,0.00013821936,0.00036805987,0.00032127334,0.00008697716,0.00002100803,0.000035180332,0.00022751601,0.00005348447],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[3.4235143e-7,0.000020698293,0.000011119146,0.29865333,0.00007415487,0.000012901486,0.0000072723783,8.869401e-10,7.240082e-7,0.00003581157,0.0021720869,0.69901156],"study_design_scores_gemma":[0.000062499865,0.000030650008,0.0000041195317,0.2607242,0.0012535808,0.000504234,0.0000030632282,5.473592e-8,6.479493e-7,0.0000060215525,0.7373277,0.00008324993],"about_ca_topic_score_codex":0.0000064051924,"about_ca_topic_score_gemma":4.4108816e-7,"teacher_disagreement_score":0.7351556,"about_ca_system_score_codex":0.000027801225,"about_ca_system_score_gemma":0.00017936034,"threshold_uncertainty_score":0.5636422},"labels":[],"label_agreement":null},{"id":"W1697472459","doi":"10.1186/1477-5751-4-4","title":"Does socioeconomic status affect mortality subsequent to hospital admission for community acquired pneumonia among older persons?","year":2005,"lang":"en","type":"article","venue":"Journal of Negative Results in BioMedicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Sunnybrook Health Science Centre; Institute for Clinical Evaluative Sciences; University of Toronto","funders":"Canadian Institutes of Health Research; Department of Family and Community Medicine, University of Toronto; University of Toronto","keywords":"Socioeconomic status; Affect (linguistics); Medicine; Pneumonia; Community-acquired pneumonia; Gerontology; Demography; Environmental health; Internal medicine; Psychology; Population","score_opus":0.027920497594706665,"score_gpt":0.3470444511718432,"score_spread":0.3191239535771365,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1697472459","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97853225,0.00007576495,0.00014036131,0.019104935,0.00077597966,0.0010150961,0.00014354792,0.000024609692,0.00018744914],"genre_scores_gemma":[0.9972954,0.000118857766,0.0004888851,0.00089206826,0.00089780986,0.000029377905,0.00002059678,0.000028870149,0.00022812597],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99749565,0.00029494634,0.0011466149,0.00023558654,0.00036103555,0.00046615495],"domain_scores_gemma":[0.9973012,0.0006325191,0.0006988362,0.00034581,0.00035302067,0.0006685967],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00166297,0.00027818145,0.00078508316,0.0006322131,0.00022977247,0.00002309965,0.00018528999,0.00017543777,0.000045323697],"category_scores_gemma":[0.0013276481,0.0001577786,0.0002770844,0.0003215471,0.0003525666,0.00027185222,0.00005519796,0.00060905056,0.0000075080893],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0037500076,0.0043096407,0.58869225,0.0004980076,0.0011447162,0.00026113534,0.03451694,0.00023680198,0.33247536,0.000016047286,0.011391348,0.02270776],"study_design_scores_gemma":[0.01047135,0.0045627654,0.9623259,0.000963307,0.0001850499,0.000049470204,0.0043211174,0.00014589846,0.007592103,0.00006058569,0.009105018,0.00021749109],"about_ca_topic_score_codex":0.0001682338,"about_ca_topic_score_gemma":0.00029590123,"teacher_disagreement_score":0.3736336,"about_ca_system_score_codex":0.0009359139,"about_ca_system_score_gemma":0.000321854,"threshold_uncertainty_score":0.64340246},"labels":[],"label_agreement":null},{"id":"W171899457","doi":"10.1155/2009/413749","title":"Antimicrobial Susceptibility of Invasive and Lower Respiratory Tract Isolates of <i>Streptococcus pneumoniae</i>, 1998 to 2007","year":2009,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Calgary Laboratory Services; Alberta Children's Hospital; University of Calgary","funders":"Alberta Children's Hospital Foundation; Children's Hospital Foundation","keywords":"Streptococcus pneumoniae; Microbiology; Antimicrobial; Respiratory tract infections; Medicine; Biology; Virology; Respiratory system; Antibiotics; Internal medicine","score_opus":0.006957779144437767,"score_gpt":0.2465127979152393,"score_spread":0.23955501877080154,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W171899457","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99660903,0.0012532132,0.000018064637,0.0012383957,0.00039584894,0.00024190139,0.00013095803,0.0000067292694,0.0001058757],"genre_scores_gemma":[0.9955588,0.0002182951,0.000006403788,0.004008383,0.00018656284,0.0000013636468,0.0000041218295,0.000009124831,0.000006957149],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986882,0.000100078316,0.0006418524,0.00019787608,0.00006893615,0.0003030515],"domain_scores_gemma":[0.9976677,0.00015448147,0.00026939804,0.00015231919,0.00026026284,0.0014958628],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025254028,0.00017059308,0.00061588956,0.00038156513,0.00008836325,0.0000087519875,0.000085416716,0.0002383169,0.00013833358],"category_scores_gemma":[0.0008769457,0.00013420168,0.00017653612,0.00018117082,0.0005912683,0.000056542303,0.000016252327,0.00032278796,0.0000024233962],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006572282,0.00028104064,0.6258809,0.000096569514,0.00008152568,0.00019158093,0.0001044274,0.0000026445161,0.36891016,0.000019991272,0.0015413634,0.0028240697],"study_design_scores_gemma":[0.0032889284,0.008387051,0.95562965,0.0008353706,0.00041881824,0.0037457366,0.000118202064,0.0000016244754,0.005273338,0.00015712983,0.021859813,0.00028433962],"about_ca_topic_score_codex":0.00043844857,"about_ca_topic_score_gemma":0.0030376213,"teacher_disagreement_score":0.36363682,"about_ca_system_score_codex":0.00007371435,"about_ca_system_score_gemma":0.0019966734,"threshold_uncertainty_score":0.54725856},"labels":[],"label_agreement":null},{"id":"W1722566635","doi":"10.1016/j.cmi.2014.11.002","title":"The impact of multimorbidity on short-term events in patients with community-acquired pneumonia: prospective cohort study","year":2014,"lang":"en","type":"article","venue":"Clinical Microbiology and Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; Alliance for Canadian Health Outcomes Research in Diabetes; University of Alberta","funders":"","keywords":"Medicine; Hazard ratio; Pneumonia; Confidence interval; Community-acquired pneumonia; Cohort study; Proportional hazards model; Prospective cohort study; Cohort; Emergency department; Population; Pediatrics; Internal medicine; Emergency medicine; Environmental health","score_opus":0.028123743540557692,"score_gpt":0.35885976449460893,"score_spread":0.33073602095405125,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1722566635","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99838984,0.0000024707417,0.0000087087055,0.000019618436,0.00022386383,0.0011714337,0.000006550686,0.000021755235,0.00015576357],"genre_scores_gemma":[0.9998053,0.000015629861,0.0000011188855,0.000048063743,0.000040595463,0.00004116088,0.000028431632,0.000008852943,0.000010858301],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99819136,0.000997102,0.0004188646,0.0002027083,0.00003463904,0.00015534309],"domain_scores_gemma":[0.99886143,0.00052951777,0.00012918968,0.00029493787,0.00012577588,0.000059156762],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010582127,0.00013911496,0.00039381726,0.000071177805,0.00028374925,0.0000037870047,0.000046751447,0.00017655453,0.0000049930195],"category_scores_gemma":[0.00031943154,0.00007485902,0.00010092034,0.00012839359,0.00034647854,0.00004172112,0.000042133393,0.00054382824,0.0000054670004],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00062109076,0.0036778392,0.99196965,0.000008117589,0.00019908357,3.196371e-7,0.00005604127,0.000008870589,0.0026304433,0.0000033781191,0.0000072096313,0.00081797777],"study_design_scores_gemma":[0.0029366498,0.015567021,0.98114884,0.00004862275,0.00007176477,0.000007737783,0.000011104423,0.00001126271,0.00007166837,0.000016620412,0.000032527576,0.00007617495],"about_ca_topic_score_codex":0.00015142717,"about_ca_topic_score_gemma":0.00026607153,"teacher_disagreement_score":0.011889183,"about_ca_system_score_codex":0.000068549714,"about_ca_system_score_gemma":0.000032254833,"threshold_uncertainty_score":0.3052662},"labels":[],"label_agreement":null},{"id":"W1738852887","doi":"10.1007/s40801-015-0037-2","title":"Value Added by the Prevnar 13 Childhood Immunization Program in Alberta, Canada (2010–2015)","year":2015,"lang":"en","type":"article","venue":"Drugs - Real World Outcomes","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta; Institute of Health Economics","funders":"","keywords":"Medicine; Pneumococcal disease; Vaccination; Pneumococcal conjugate vaccine; Serotype; Incidence (geometry); Streptococcus pneumoniae; Disease burden; Meningitis; Immunization; Pediatrics; Public health; Immunization program; Environmental health; Demography; Immunology; Population; Antibiotics; Biology","score_opus":0.010603683428356292,"score_gpt":0.2755264871306302,"score_spread":0.26492280370227395,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1738852887","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.85124624,0.0002670555,0.000004392585,0.07791991,0.0015459749,0.0024198357,0.00003799097,0.0002223078,0.06633628],"genre_scores_gemma":[0.96549535,0.000028520084,0.000029133043,0.0025718543,0.00010770926,0.0001536537,0.00012357096,0.00003628829,0.031453952],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985074,0.00013624982,0.00037098993,0.00023414922,0.000386315,0.00036491652],"domain_scores_gemma":[0.9988806,0.00018897162,0.00011309436,0.0004921801,0.000091869806,0.00023326647],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023055411,0.00021776932,0.00035564712,0.00013158147,0.00014382378,0.0000331573,0.00018047792,0.00007062393,0.00005046658],"category_scores_gemma":[0.00017308301,0.00013754528,0.00008539324,0.0006328666,0.00007062717,0.00009113769,0.00005582493,0.00035214025,0.000035405817],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029786594,0.0006897883,0.8827697,0.000031039337,0.00017449797,0.000020289148,0.0023015547,0.000115892966,0.00008419504,0.00079121866,0.10427376,0.008718296],"study_design_scores_gemma":[0.0018402323,0.000093483926,0.7271827,0.000054321885,0.000094908915,0.000014571195,0.0005118274,0.00014106864,0.00012156694,0.00009545577,0.26963574,0.00021416148],"about_ca_topic_score_codex":0.74451625,"about_ca_topic_score_gemma":0.8652464,"teacher_disagreement_score":0.16536199,"about_ca_system_score_codex":0.00032114206,"about_ca_system_score_gemma":0.0008569581,"threshold_uncertainty_score":0.5608934},"labels":[],"label_agreement":null},{"id":"W1750464492","doi":"10.1002/bmc.2896","title":"A liquid chromatography–mass spectrometric method for the quantification of azithromycin in human plasma","year":2013,"lang":"en","type":"article","venue":"Biomedical Chromatography","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Chemistry; Chromatography; Extraction (chemistry); Ammonium acetate; Calibration curve; Selected ion monitoring; Detection limit; Ammonium hydroxide; Mass spectrometry; Coefficient of variation; Pharmacokinetics; Analytical Chemistry (journal); High-performance liquid chromatography; Gas chromatography–mass spectrometry","score_opus":0.023874288611240968,"score_gpt":0.3181517486877748,"score_spread":0.2942774600765338,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1750464492","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.951627,0.0005027409,0.041441243,0.0029993965,0.0003535629,0.002328991,0.000035974434,0.00016400887,0.0005470815],"genre_scores_gemma":[0.99416137,0.00009590748,0.0045487895,0.00023275398,0.00016828827,0.00068606547,0.000049154376,0.00003753093,0.000020170017],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9976904,0.00011866925,0.00079765596,0.00041983483,0.00050931214,0.00046415158],"domain_scores_gemma":[0.9981789,0.00057210505,0.00025187468,0.0005706373,0.00017034308,0.00025611898],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000669214,0.00025460622,0.00056792784,0.0022053188,0.0002074692,0.000029463694,0.0002689432,0.0002695329,0.00026930636],"category_scores_gemma":[0.0001795224,0.00016736261,0.0005401545,0.004860967,0.0005729638,0.000102523954,0.000032365326,0.0002854859,0.000021260925],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004696835,0.00076963735,0.017790226,0.0003229062,0.00028071326,0.0000051082447,0.00010997132,0.0000017376163,0.97486675,0.0015952179,0.0023776991,0.0018330778],"study_design_scores_gemma":[0.0071007092,0.00558701,0.82341534,0.000517945,0.00057990896,0.00017237593,0.0007219425,0.00390809,0.107191235,0.0015712121,0.048543297,0.0006909648],"about_ca_topic_score_codex":0.00027196063,"about_ca_topic_score_gemma":0.000017999453,"teacher_disagreement_score":0.8676755,"about_ca_system_score_codex":0.000038314534,"about_ca_system_score_gemma":0.00010278951,"threshold_uncertainty_score":0.6824849},"labels":[],"label_agreement":null},{"id":"W1755265139","doi":"10.1186/1472-6963-6-152","title":"Socioeconomic status and hospital utilization among younger adult pneumonia admissions at a Canadian hospital","year":2006,"lang":"en","type":"article","venue":"BMC Health Services Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"St. Paul's Hospital; Centre for Advancing Health Outcomes; University of British Columbia","funders":"Canadian Institutes of Health Research; Vancouver Foundation","keywords":"Medicine; Socioeconomic status; Health administration; Household income; Case mix index; Pneumonia; Health services research; Demography; Public health; Population; Receipt; Pediatrics; Emergency medicine; Environmental health; Nursing; Internal medicine","score_opus":0.023368254012710584,"score_gpt":0.356004401209944,"score_spread":0.3326361471972334,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1755265139","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9913916,0.00071555073,0.0000025716095,0.0047956626,0.00022324627,0.0012356354,0.00008631548,0.00007699348,0.0014724375],"genre_scores_gemma":[0.99623007,0.00053482817,0.00004291901,0.0013256777,0.00028649854,0.00012358303,0.00017818883,0.000045800363,0.0012324316],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9971828,0.00021263107,0.0004252706,0.00050513697,0.00041213175,0.0012620328],"domain_scores_gemma":[0.9969197,0.00010538649,0.000101579266,0.0003688259,0.0004153027,0.0020892029],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.000461232,0.00019534341,0.00030394038,0.0005352197,0.0013157321,0.000091178335,0.0001167152,0.000216467,0.00029948467],"category_scores_gemma":[0.00004059894,0.00017863564,0.000070561095,0.00036817475,0.00017409076,0.0002618146,0.00010356495,0.00047843048,0.00023546623],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001827305,0.00014908772,0.9964321,0.00056789897,0.00001603839,0.000019491177,0.0012674065,0.0000065616855,0.0002580301,0.00018064928,0.0006244026,0.0004600366],"study_design_scores_gemma":[0.0007589366,0.000612708,0.9699577,0.00017683672,0.000011003353,0.000015733893,0.0016844985,0.0010284099,0.000037484657,0.00006631773,0.025481617,0.00016873614],"about_ca_topic_score_codex":0.2544555,"about_ca_topic_score_gemma":0.48010018,"teacher_disagreement_score":0.22564466,"about_ca_system_score_codex":0.0013857163,"about_ca_system_score_gemma":0.0031869742,"threshold_uncertainty_score":0.99998444},"labels":[],"label_agreement":null},{"id":"W1777067084","doi":"10.1093/pch/14.4.245","title":"Vaccination site reaction or bacterial cellulitis?","year":2009,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Children's Hospital","funders":"","keywords":"Anonymity; Cellulitis; CLARITY; Medicine; Vaccination; Pediatrics; Surgery; Immunology; Computer science; Computer security","score_opus":0.015212694078192472,"score_gpt":0.2928367796903994,"score_spread":0.2776240856122069,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1777067084","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91696596,0.0007286666,0.0006042957,0.06269547,0.0026045542,0.0013139778,0.000055890116,0.0005146677,0.014516491],"genre_scores_gemma":[0.98576003,0.0019928117,0.0001418546,0.008400464,0.0031869523,0.000009179893,0.00015825011,0.000018201335,0.00033224426],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9987318,0.00007390728,0.00037118283,0.00025372452,0.00023761352,0.00033179377],"domain_scores_gemma":[0.999151,0.000045241602,0.00018526196,0.00022636614,0.00009103741,0.00030110124],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029615744,0.00014094824,0.00025763546,0.00026815647,0.00033394928,0.000023034632,0.00004061213,0.00012838624,0.00015754382],"category_scores_gemma":[0.0001237284,0.000113955175,0.000094181436,0.0005255244,0.000007410917,0.0001283878,0.000009417913,0.00033817533,0.00015554634],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017943091,0.004874636,0.12210535,0.0012550718,0.00014179926,0.00025732425,0.0042037778,0.000032894488,0.06887498,0.0041735186,0.08693501,0.70535135],"study_design_scores_gemma":[0.0019300435,0.0015174788,0.7830864,0.00003794011,0.000059303115,0.00022582195,0.000028649889,0.00004361394,0.00021391733,0.00011506352,0.21257438,0.00016738556],"about_ca_topic_score_codex":0.000045110708,"about_ca_topic_score_gemma":0.000045009616,"teacher_disagreement_score":0.7051839,"about_ca_system_score_codex":0.00025374503,"about_ca_system_score_gemma":0.00034946014,"threshold_uncertainty_score":0.4646957},"labels":[],"label_agreement":null},{"id":"W1790933236","doi":"10.1016/j.jtbi.2015.09.031","title":"How direct competition shapes coexistence and vaccine effects in multi-strain pathogen systems","year":2015,"lang":"en","type":"article","venue":"Journal of Theoretical Biology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Society for Vascular Surgery","keywords":"Pathogen; Biology; Pairwise comparison; Competition (biology); Colonization; Strain (injury); Microbiology; Vaccine efficacy; Pneumococcal conjugate vaccine; Transmission (telecommunications); Genetics; Virology; Vaccination; Streptococcus pneumoniae; Bacteria; Ecology; Computer science; Mathematics; Statistics","score_opus":0.0295796614563098,"score_gpt":0.30369772705245407,"score_spread":0.27411806559614427,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1790933236","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98832136,0.0015560477,0.003382066,0.0051176967,0.0005644462,0.0002641726,0.000019443274,0.000016689784,0.00075805705],"genre_scores_gemma":[0.99923635,0.00007257591,0.0002474459,0.00025084786,0.00016209505,0.00000375562,0.0000025346908,0.0000062697504,0.000018106864],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99906874,0.00032027895,0.00027812028,0.00010279021,0.00007940952,0.0001506704],"domain_scores_gemma":[0.99918056,0.00028026136,0.00013148901,0.000063388914,0.0001347807,0.00020952236],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00067378994,0.0000937798,0.00039885912,0.00013770683,0.000022003574,0.000016258238,0.000051753257,0.00013238643,0.0000052885093],"category_scores_gemma":[0.001091949,0.000057687754,0.000057980447,0.000088573535,0.00022203491,0.000040345214,0.000022028235,0.00024213035,0.0000027021406],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005251751,0.00048248764,0.11032465,0.00021788175,0.00013217394,0.00071412127,0.00033363161,0.000025505704,0.6317058,0.25354385,0.00006976192,0.0019249158],"study_design_scores_gemma":[0.06726366,0.05424466,0.64750725,0.0057827034,0.0017236879,0.045311082,0.005094895,0.021601478,0.010166592,0.0757893,0.06357607,0.0019386034],"about_ca_topic_score_codex":0.0000018269968,"about_ca_topic_score_gemma":0.0000020323173,"teacher_disagreement_score":0.62153924,"about_ca_system_score_codex":0.00004765553,"about_ca_system_score_gemma":0.000047449932,"threshold_uncertainty_score":0.23524383},"labels":[],"label_agreement":null},{"id":"W1793744373","doi":"10.1111/resp.12597","title":"Is <scp>COPD</scp> associated with increased mortality and morbidity in hospitalized pneumonia? A systematic review and meta‐analysis","year":2015,"lang":"en","type":"review","venue":"Respirology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; COPD; Mechanical ventilation; Confidence interval; Meta-analysis; Internal medicine; Relative risk; Intensive care unit; Cohort study; Pneumonia; Cohort; Intensive care medicine","score_opus":0.11364570432566422,"score_gpt":0.38338804333052007,"score_spread":0.26974233900485584,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1793744373","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.006494696,0.98852915,0.0000026609084,0.00019647137,0.000027103612,0.0041708597,0.00022055497,0.0000856967,0.00027282652],"genre_scores_gemma":[0.000989708,0.99521345,0.0000060304833,0.0020462894,0.000024417153,0.0012752329,0.00012528231,0.0000651846,0.0002543884],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99414426,0.002441831,0.001504882,0.00094002776,0.0004301508,0.000538852],"domain_scores_gemma":[0.9961302,0.0009315618,0.0011951156,0.0010133195,0.00025501172,0.000474739],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0025285804,0.0007975793,0.013839776,0.0008461798,0.000095519485,0.000034482277,0.00018188015,0.00081277825,0.000037678543],"category_scores_gemma":[0.00217756,0.0004898477,0.001168149,0.0018815637,0.00031369377,0.00007671018,0.0001309182,0.0008122037,0.000017169745],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000034157797,0.0003027255,0.006812031,0.7765984,0.21538825,0.0004553423,0.00007455976,3.6538316e-7,0.0000012603571,0.000016956654,0.00024989506,0.00009679164],"study_design_scores_gemma":[0.00074078265,0.00042836074,0.0089027705,0.022802824,0.9319277,0.00034995953,0.0000077214645,0.000009167268,8.684807e-8,0.000021826027,0.03458429,0.00022454727],"about_ca_topic_score_codex":0.00038261423,"about_ca_topic_score_gemma":0.00050813414,"teacher_disagreement_score":0.75379556,"about_ca_system_score_codex":0.00021702396,"about_ca_system_score_gemma":0.0005582065,"threshold_uncertainty_score":0.9997553},"labels":[],"label_agreement":null},{"id":"W180171383","doi":"10.1007/978-3-642-59681-0_12","title":"Pre-clinical Microbiology — Respiratory Tract Infections Susceptibility Survey — Europe","year":2000,"lang":"en","type":"book-chapter","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Juravinski Hospital; Hamilton General Hospital","funders":"","keywords":"Penicillin; Microbiology; Moraxella catarrhalis; Respiratory tract infections; Respiratory tract; Antibiotic resistance; Streptococcus pneumoniae; Drug resistance; Biology; Antibiotics; Respiratory system","score_opus":0.07467795479777642,"score_gpt":0.3480222420076943,"score_spread":0.2733442872099179,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W180171383","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.051629588,0.000251332,0.000027554199,0.00023939212,0.0012933039,0.0010441993,0.00040193344,0.0004665085,0.9446462],"genre_scores_gemma":[0.05593239,0.0009916172,0.000018324752,0.0059865657,0.0014337006,0.000025582262,0.00060580776,0.00021298995,0.934793],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.99657214,0.00045918697,0.0013729807,0.0010270594,0.00014010271,0.0004285603],"domain_scores_gemma":[0.9969137,0.0006794514,0.00029734397,0.0012465751,0.00043276767,0.00043018963],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0012759909,0.00059279037,0.0011787722,0.00033473055,0.0002255649,0.00002688665,0.00017495509,0.001496879,0.016472282],"category_scores_gemma":[0.00043591714,0.00048341925,0.00068807777,0.00012268148,0.00072127994,0.00006459814,0.000080979844,0.0020882434,0.0040644635],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00061250245,0.0058226148,0.85454446,0.00020650732,0.0017312898,0.00034312007,0.000056717126,0.000011345826,0.008966799,0.005037478,0.10821028,0.014456889],"study_design_scores_gemma":[0.0006660191,0.0017798424,0.29209068,0.00006571627,0.00022532776,0.00022220386,5.0344516e-7,6.3046014e-7,0.000012111447,0.00015129644,0.70444053,0.00034516625],"about_ca_topic_score_codex":0.000106149426,"about_ca_topic_score_gemma":0.0014965937,"teacher_disagreement_score":0.5962302,"about_ca_system_score_codex":0.00012868244,"about_ca_system_score_gemma":0.0008835588,"threshold_uncertainty_score":0.9997994},"labels":[],"label_agreement":null},{"id":"W1810871247","doi":"10.1111/j.1445-5994.2008.01685.x","title":"Raising the profile of pneumococcal disease","year":2008,"lang":"en","type":"editorial","venue":"Internal Medicine Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Streptococcus pneumoniae; Pneumococcal conjugate vaccine; Pneumococcal infections; Disease; Immunology; Pneumococcal vaccine; Meningitis; Pneumonia; Pneumococcal pneumonia; Infectious disease (medical specialty); Pneumococcal disease; Otitis; Pneumococcal polysaccharide vaccine; Conjugate vaccine; Pediatrics; Immunization; Internal medicine; Antibody; Antibiotics; Microbiology; Biology","score_opus":0.024473135566554366,"score_gpt":0.334136289485102,"score_spread":0.3096631539185476,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1810871247","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.009845637,0.00234084,0.0003821061,0.0066589173,0.97075963,0.0004232473,0.00005746315,0.000043509415,0.009488642],"genre_scores_gemma":[0.02721479,0.001971424,0.00001063191,0.00029523525,0.96168244,0.00001674303,0.00003124609,0.000072330884,0.008705138],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.996233,0.00019080912,0.0011307006,0.0002710202,0.0017966271,0.00037783364],"domain_scores_gemma":[0.99620205,0.0008168111,0.0009174706,0.00045678177,0.000964251,0.0006426528],"candidate_categories":["research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006579776,0.00038772967,0.0009174786,0.0004133641,0.00029239708,0.000024331901,0.0004351398,0.0003706137,0.0011007866],"category_scores_gemma":[0.004404294,0.00019738762,0.00049949065,0.00021998682,0.0007609479,0.000083522114,0.00008782583,0.0038288676,0.000043408407],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037562722,0.00013978871,0.0015540896,0.0001902354,0.0003462252,0.0009787984,0.00027731946,0.0000028493819,0.004647566,0.00000305187,0.9901608,0.0013236167],"study_design_scores_gemma":[0.0019733133,0.0011543069,0.007331705,0.00506187,0.00075224356,0.0027754686,0.00007233497,0.000017782282,0.00007220057,0.00007880197,0.98053956,0.00017041262],"about_ca_topic_score_codex":0.000048448484,"about_ca_topic_score_gemma":0.0000035490343,"teacher_disagreement_score":0.017369153,"about_ca_system_score_codex":0.00021532159,"about_ca_system_score_gemma":0.0015451979,"threshold_uncertainty_score":0.99981236},"labels":[],"label_agreement":null},{"id":"W1820351509","doi":"10.4049/jimmunol.1202113","title":"MARCO Is Required for TLR2- and Nod2-Mediated Responses to <i>Streptococcus pneumoniae</i> and Clearance of Pneumococcal Colonization in the Murine Nasopharynx","year":2012,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Institute of Allergy and Infectious Diseases; National Institute of Diabetes and Digestive and Kidney Diseases; National Cancer Institute; McMaster University","keywords":"Streptococcus pneumoniae; TLR2; Receptor; Microbiology; Biology; Colonization; Mannose receptor; Immunology; Cytokine; Scavenger receptor; Chemokine; Inflammation; Macrophage; Innate immune system; Immune system; In vitro; Antibiotics","score_opus":0.02074018658671727,"score_gpt":0.29598337543237185,"score_spread":0.2752431888456546,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1820351509","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.985185,0.0021265205,0.000039285304,0.011945806,0.00016053896,0.0004935247,0.000011500684,0.000005012553,0.000032802538],"genre_scores_gemma":[0.9977555,0.0008323297,0.000026013471,0.0012051087,0.00009794026,0.000015857551,0.0000010633155,0.000011125754,0.000055059143],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989166,0.00028708778,0.0004121018,0.000068917274,0.00010798204,0.00020730968],"domain_scores_gemma":[0.9986767,0.0006941185,0.0002484959,0.00016938004,0.00015442255,0.000056877376],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010291254,0.00010084049,0.00029515478,0.00016795858,0.0000958427,0.000006171224,0.000115623225,0.0000885976,0.000009478141],"category_scores_gemma":[0.000497238,0.00005651797,0.000046010675,0.00023722282,0.00022431056,0.00009876433,0.000042142015,0.00024798248,0.0000024590747],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020811853,0.00017836697,0.09481085,0.00003932267,0.000091907175,0.0000072561916,0.0031848857,0.0000030859803,0.89820546,0.00006266738,0.00020253667,0.0011324945],"study_design_scores_gemma":[0.0020962695,0.0021536874,0.97189903,0.00010643773,0.00012136295,0.0012205745,0.00067530427,0.000015964026,0.011785773,0.00005557591,0.009800492,0.000069542264],"about_ca_topic_score_codex":0.000009167852,"about_ca_topic_score_gemma":0.0000065234126,"teacher_disagreement_score":0.88641965,"about_ca_system_score_codex":0.000025783302,"about_ca_system_score_gemma":0.000063762825,"threshold_uncertainty_score":0.2304736},"labels":[],"label_agreement":null},{"id":"W1850091017","doi":"10.1046/j.1469-0691.8.s.3.2.x","title":"The era of antimicrobial resistance—implications for the clinical laboratory","year":2002,"lang":"en","type":"review","venue":"Clinical Microbiology and Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital","funders":"","keywords":"Streptococcus pneumoniae; Antibiotic resistance; Cefotaxime; Biology; Microbiology; Erythromycin; Drug resistance; Antibiotics","score_opus":0.11153230948415385,"score_gpt":0.4410342996517416,"score_spread":0.32950199016758774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1850091017","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0004289941,0.99128,0.00018297521,0.002972118,0.002739432,0.0018599558,0.00030739725,0.00004950656,0.00017957775],"genre_scores_gemma":[0.00020828833,0.9972797,0.000031537147,0.0007732685,0.0010053391,0.00018428577,0.000074621166,0.00002787663,0.00041509175],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9968249,0.00072411733,0.001747059,0.00044064748,0.000019928762,0.00024334641],"domain_scores_gemma":[0.99160045,0.0066070417,0.00081596395,0.00060247123,0.00028694526,0.00008709578],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017946356,0.00025912657,0.0013525679,0.000052542815,0.00071806205,0.000019270608,0.000143606,0.001087142,0.000013241993],"category_scores_gemma":[0.0016169522,0.00012993148,0.0010387899,0.00027263723,0.0017075143,0.000030414894,0.000064928085,0.0014102915,0.000027908478],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007047507,0.00046691214,0.0051012933,0.0025911308,0.0010922296,5.6047645e-7,0.000006422382,1.007357e-7,0.00013873166,0.00076831,0.05908548,0.93067837],"study_design_scores_gemma":[0.00053257553,0.0003399551,0.0041276524,0.0012741071,0.0018772995,0.00009217631,0.000001260208,4.3089705e-7,0.0000020293924,0.000031235824,0.99159175,0.00012951811],"about_ca_topic_score_codex":0.000001956939,"about_ca_topic_score_gemma":0.000040252635,"teacher_disagreement_score":0.93250626,"about_ca_system_score_codex":0.00003147298,"about_ca_system_score_gemma":0.00034578663,"threshold_uncertainty_score":0.8385035},"labels":[],"label_agreement":null},{"id":"W185151625","doi":"10.1007/0-306-46834-4_4","title":"Laboratory Diagnosis of Community-Acquired Pneumonia","year":2006,"lang":"en","type":"book-chapter","venue":"Kluwer Academic Publishers eBooks","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; Queen Elizabeth II Health Sciences Centre; Princess Margaret Cancer Centre; Dalhousie University","funders":"","keywords":"Community-acquired pneumonia; Pneumonia; Medicine; Intensive care medicine; Internal medicine","score_opus":0.029639817497439575,"score_gpt":0.2721417437844094,"score_spread":0.24250192628696984,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W185151625","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.01438587,0.00080238545,0.000008832124,0.0012782642,0.0009554876,0.0009073727,0.00047739432,0.00039051517,0.9807939],"genre_scores_gemma":[0.10110821,0.00013115886,0.000034219738,0.0064472514,0.0012259614,0.00027827482,0.00048379984,0.00042952248,0.8898616],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9967445,0.0001675,0.0012594281,0.00044990677,0.00080237107,0.00057626277],"domain_scores_gemma":[0.99656373,0.0003226709,0.00080324494,0.0012814839,0.00059783045,0.00043101498],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.00072747696,0.0007492085,0.0013411554,0.00088753155,0.0003179146,0.000082259285,0.00066048175,0.0024200957,0.00039101197],"category_scores_gemma":[0.0001990122,0.0007168146,0.000554898,0.000110118366,0.0008991295,0.00036027763,0.0002806021,0.00422667,0.00009000207],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000102992664,0.00024192987,0.011844937,0.0012207686,0.0012823622,0.00014147573,0.0009896273,0.0000069138923,0.023658548,0.007831597,0.94319725,0.009481608],"study_design_scores_gemma":[0.0010383149,0.00029782287,0.0028989362,0.00081720925,0.0007185321,0.000067979425,0.000074992684,0.0000016338959,0.0012426936,0.002351937,0.98987716,0.0006128089],"about_ca_topic_score_codex":0.00009489461,"about_ca_topic_score_gemma":0.000018645438,"teacher_disagreement_score":0.09093227,"about_ca_system_score_codex":0.00034739278,"about_ca_system_score_gemma":0.00078627624,"threshold_uncertainty_score":0.9995283},"labels":[],"label_agreement":null},{"id":"W1854486753","doi":"10.1007/s11908-015-0507-4","title":"The Value of Macrolide-Based Regimens for Community-Acquired Pneumonia","year":2015,"lang":"en","type":"article","venue":"Current Infectious Disease Reports","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Intensive care medicine; Medicine; Pneumonia; Community-acquired pneumonia; Macrolide Antibiotics; Antimicrobial; Intensive care unit; Adverse effect; Respiratory tract infections; Erythromycin; Antibiotics; Internal medicine; Respiratory system; Microbiology; Biology","score_opus":0.04971132891038221,"score_gpt":0.3392242479530277,"score_spread":0.2895129190426455,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1854486753","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9907962,0.0013632998,0.0007139929,0.0011595665,0.0028948453,0.0013922292,0.00004704696,0.0002446427,0.0013881649],"genre_scores_gemma":[0.9988649,0.000056515157,0.000008135093,0.0002316647,0.0002115084,0.0003344092,0.000062867184,0.000036228346,0.00019380171],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981682,0.00024194861,0.0006100861,0.00022329175,0.00040020404,0.00035627448],"domain_scores_gemma":[0.996869,0.00036114038,0.00050296925,0.0009842211,0.0006577581,0.000624911],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001013735,0.00021518962,0.00034499072,0.00012593692,0.00055522006,0.000036652666,0.000081849816,0.00007515987,0.0000060248926],"category_scores_gemma":[0.0017646608,0.00015380942,0.0003667809,0.00026920033,0.00018359355,0.00006102097,0.000051655337,0.00025857077,0.000008313558],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044540226,0.0031759008,0.96573925,0.0009952754,0.00036539757,0.00021727443,0.0002498321,0.0010705432,0.005482706,0.0006600429,0.015244652,0.006353717],"study_design_scores_gemma":[0.004086714,0.0013773242,0.13756303,0.00062415184,0.001593893,0.0006874479,0.00013865814,0.0012435162,0.0025793468,0.0063182707,0.8432253,0.0005623501],"about_ca_topic_score_codex":0.000049779475,"about_ca_topic_score_gemma":0.000017016873,"teacher_disagreement_score":0.8281762,"about_ca_system_score_codex":0.00028198128,"about_ca_system_score_gemma":0.0011128504,"threshold_uncertainty_score":0.6272166},"labels":[],"label_agreement":null},{"id":"W1864925871","doi":"10.4212/cjhp.v59i2.223","title":"Management of Community-Acquired Pneumonia at a Tertiary-Care Teaching Hospital","year":2006,"lang":"en","type":"article","venue":"The Canadian Journal of Hospital Pharmacy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Sunnybrook Health Science Centre; Sunnybrook Hospital; Lions Gate Hospital; Health Sciences Centre","funders":"","keywords":"Medicine; Levofloxacin; Pneumonia; Community-acquired pneumonia; Internal medicine; Sputum culture; Ceftriaxone; Ciprofloxacin; Serratia marcescens; Hospital-acquired pneumonia; Intensive care medicine; Regimen; Empiric therapy; Sputum; Antibiotics; Microbiology; Pathology","score_opus":0.0124233429645748,"score_gpt":0.2762312032311624,"score_spread":0.2638078602665876,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1864925871","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9820722,0.0010282209,0.000009762524,0.010833664,0.0007744335,0.0003172369,0.000024106615,0.000013459893,0.004926924],"genre_scores_gemma":[0.9988311,0.00003463729,0.000045942328,0.0004086236,0.00027362717,0.0000053951094,0.000007714973,0.000029258572,0.00036369116],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986418,0.00017201962,0.00049662904,0.00007768138,0.00027604905,0.00033585742],"domain_scores_gemma":[0.99873227,0.000042858348,0.00032226217,0.000312358,0.00021084216,0.0003794276],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035681663,0.00018080886,0.00028039073,0.00021651744,0.0008488897,0.00003963309,0.00034985415,0.00004032972,0.00008484232],"category_scores_gemma":[0.000018212766,0.00012842736,0.00026821977,0.0001464193,0.00025595975,0.00015576181,0.000053686665,0.00061045197,0.000017551354],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011724321,0.0010775301,0.90098953,0.00073971035,0.001628745,0.0037644396,0.018180871,0.00033530238,0.02894054,0.0012362463,0.023788875,0.019200966],"study_design_scores_gemma":[0.0041813552,0.0015109973,0.86932075,0.0006422503,0.00094419013,0.00076520786,0.004866283,0.00002240975,0.0041047465,0.00037784642,0.112870015,0.00039392157],"about_ca_topic_score_codex":0.0099931955,"about_ca_topic_score_gemma":0.005352698,"teacher_disagreement_score":0.08908114,"about_ca_system_score_codex":0.00044888657,"about_ca_system_score_gemma":0.00031852847,"threshold_uncertainty_score":0.9965993},"labels":[],"label_agreement":null},{"id":"W1866077406","doi":"10.4314/ahs.v15i3.22","title":"New pneumococcal conjugate vaccine introductions in four sub-Saharan African countries: a cross-country analysis of health systems’ impacts","year":2015,"lang":"en","type":"article","venue":"African Health Sciences","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Bill and Melinda Gates Foundation","keywords":"Medicine; Context (archaeology); Developing country; Vaccination; Environmental health; Pneumococcal conjugate vaccine; Service delivery framework; Health facility; Health care; Socioeconomics; Economic growth; Population; Health services; Service (business); Geography; Business; Immunology","score_opus":0.04859615978304719,"score_gpt":0.3674140825592464,"score_spread":0.3188179227761992,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1866077406","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9626348,0.003596878,0.00037247193,0.02967964,0.0012087604,0.001136267,0.00011068177,0.000118887576,0.0011416295],"genre_scores_gemma":[0.99758816,0.0005675334,0.00008674965,0.001265897,0.0003304635,0.00003379212,0.000012975221,0.000014415078,0.0001000401],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9959558,0.0003317569,0.001356791,0.00060235185,0.0008402672,0.0009130227],"domain_scores_gemma":[0.9971028,0.00019951873,0.0007692425,0.00046761497,0.00034287383,0.0011179708],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004020499,0.00024952486,0.0012834066,0.0016924476,0.00047658646,0.00009993615,0.00026341405,0.00008780908,0.00003349999],"category_scores_gemma":[0.00046762038,0.0001955319,0.00013994162,0.007764864,0.00043103463,0.0003144528,0.000048476963,0.00030603402,0.00001710317],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016003127,0.0003276182,0.97703356,0.00044985508,0.00036800784,0.000014669561,0.005089915,0.0072089117,0.0010888873,0.0012515173,0.006053602,0.00095340767],"study_design_scores_gemma":[0.0020966781,0.0034362564,0.9252068,0.000319961,0.00025646217,0.00015156035,0.0054961834,0.002632101,0.000049864528,0.000077776116,0.059934057,0.0003422994],"about_ca_topic_score_codex":0.022002434,"about_ca_topic_score_gemma":0.0050314907,"teacher_disagreement_score":0.053880453,"about_ca_system_score_codex":0.00074248767,"about_ca_system_score_gemma":0.007934859,"threshold_uncertainty_score":0.99768925},"labels":[],"label_agreement":null},{"id":"W1870825306","doi":"10.1111/j.1368-5031.2004.00152.x","title":"Therapeutic implications of macrolide resistance in pneumococcal community-acquired lower respiratory tract infections","year":2004,"lang":"en","type":"review","venue":"International Journal of Clinical Practice","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Tolerability; Streptococcus pneumoniae; Respiratory tract infections; Ketolide; Drug resistance; Antibiotic resistance; Intensive care medicine; Antibiotics; Microbiology; Immunology; Adverse effect; Internal medicine; Respiratory system; Biology","score_opus":0.1827354445282783,"score_gpt":0.5292895622263697,"score_spread":0.3465541176980914,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1870825306","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0027088034,0.97381324,0.0004538213,0.0061082765,0.004307396,0.0009157453,0.000099451216,0.00003763175,0.011555633],"genre_scores_gemma":[0.02788878,0.96874976,0.0003743084,0.0016932066,0.0010750022,0.000035498833,0.00001581826,0.00006428175,0.00010332701],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9918259,0.002214239,0.004749896,0.00024835803,0.0007345036,0.00022714914],"domain_scores_gemma":[0.9832356,0.009054161,0.004924702,0.00061908306,0.0019170322,0.00024940624],"candidate_categories":["metaresearch","metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0044103866,0.0003389245,0.0021175018,0.0008213523,0.000112426074,0.000049204267,0.0007325014,0.00059136207,0.00008997531],"category_scores_gemma":[0.01223161,0.0002725469,0.0016132417,0.000585379,0.00034290578,0.0005524653,0.000100776066,0.0035872182,0.000038257112],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022127244,0.06388161,0.015510439,0.0071747997,0.009862592,0.002742512,0.0005294176,0.00009219493,0.00034354528,0.0069677853,0.00088179397,0.8898006],"study_design_scores_gemma":[0.0016891133,0.0010253345,0.02501356,0.011195946,0.0015926863,0.0020461758,0.00004571592,2.6151878e-7,0.0000011983246,0.00091155124,0.9562843,0.00019415487],"about_ca_topic_score_codex":0.000026772504,"about_ca_topic_score_gemma":0.00006127096,"teacher_disagreement_score":0.9554025,"about_ca_system_score_codex":0.0005190862,"about_ca_system_score_gemma":0.0034438241,"threshold_uncertainty_score":0.9999727},"labels":[],"label_agreement":null},{"id":"W1871278074","doi":"10.1111/j.1469-0691.2012.03783.x","title":"Impact of guideline-concordant antibiotics and macrolide/β-lactam combinations in 3203 patients hospitalized with pneumonia: prospective cohort study","year":2012,"lang":"en","type":"article","venue":"Clinical Microbiology and Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; University of Alberta","funders":"Alberta Heritage Foundation for Medical Research; Canadian Institutes of Health Research; Abbott Canada","keywords":"Medicine; Pneumonia; Antibiotics; Prospective cohort study; Guideline; Cohort study; Antibacterial agent; Intensive care medicine; Lactam; Macrolide Antibiotics; Internal medicine; Microbiology; Biology; Pathology; Erythromycin; Chemistry","score_opus":0.01364226412245926,"score_gpt":0.35227735342899796,"score_spread":0.3386350893065387,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1871278074","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981557,0.000023142895,0.000040691008,0.000053323394,0.00027141205,0.0012316012,0.000017448243,0.000026688927,0.00017998672],"genre_scores_gemma":[0.99965715,0.0001031666,0.000027719188,0.00009246296,0.000051238232,0.0000072051607,0.00003500867,0.000012387224,0.000013656373],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985996,0.0002059548,0.00067658507,0.00026357788,0.000035202305,0.00021908322],"domain_scores_gemma":[0.9991442,0.00012445645,0.00022361832,0.00015345214,0.0002352053,0.00011905883],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00058882666,0.00016555627,0.00053364993,0.0001536399,0.00009405706,0.000006396501,0.000021742148,0.00021215936,0.00001302763],"category_scores_gemma":[0.00029265834,0.000112511814,0.000086523854,0.00020966875,0.0003650898,0.00012287013,0.000041497533,0.00033905613,0.0000037970335],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017731756,0.004458867,0.9887143,0.000015299438,0.0002516978,0.0000016843229,0.00011108456,0.000001918163,0.005937828,0.00001804461,0.000040939012,0.00027103547],"study_design_scores_gemma":[0.005606279,0.007587405,0.98604465,0.000033633423,0.00022349367,0.000082491715,0.000021781698,0.000014669966,0.00015315048,0.0000189611,0.00009270439,0.00012079661],"about_ca_topic_score_codex":0.00014120633,"about_ca_topic_score_gemma":0.000049951028,"teacher_disagreement_score":0.005784678,"about_ca_system_score_codex":0.00006687491,"about_ca_system_score_gemma":0.000060293412,"threshold_uncertainty_score":0.45880985},"labels":[],"label_agreement":null},{"id":"W1871305280","doi":"10.1111/j.1469-0691.2012.04003.x","title":"Obesity and outcomes in patients hospitalized with pneumonia","year":2012,"lang":"en","type":"article","venue":"Clinical Microbiology and Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; University of Alberta","funders":"National Heart, Lung, and Blood Institute; Canadian Institutes of Health Research; Health Canada; Pfizer Canada","keywords":"Underweight; Medicine; Overweight; Body mass index; Pneumonia; Obesity; Internal medicine; Odds ratio; Pediatrics","score_opus":0.01597430803110395,"score_gpt":0.31144034148295036,"score_spread":0.2954660334518464,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1871305280","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99890983,0.0000286316,0.000011298854,0.00024755654,0.00035178443,0.0002234737,0.0000031967961,0.000029319923,0.00019493172],"genre_scores_gemma":[0.9989639,0.000115839925,0.00001876589,0.0007708912,0.000052823983,0.000008459178,0.0000117482505,0.0000057964353,0.00005177389],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993164,0.00010371089,0.00023834789,0.00016008203,0.000013627749,0.00016784646],"domain_scores_gemma":[0.9996438,0.00007656618,0.000060980605,0.000084488194,0.000032603875,0.00010154913],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002378363,0.00009653824,0.00028662785,0.00006531764,0.00007276283,0.000004201353,0.000010100564,0.00021642396,0.000013022467],"category_scores_gemma":[0.00012517182,0.00006335688,0.000039374994,0.00006743914,0.00022605046,0.00009135679,0.000024747496,0.00024463516,0.000014416134],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006350712,0.0006697463,0.9961064,0.000013457701,0.000038022834,5.7601966e-7,0.00002406719,5.3651377e-8,0.002027297,0.000028559512,0.000025638095,0.0010027132],"study_design_scores_gemma":[0.0022747652,0.0011748674,0.9921691,0.000020942975,0.0000524919,0.000042323736,0.0000021822902,7.1596867e-7,0.00005883695,0.000012597121,0.0041109305,0.00008026439],"about_ca_topic_score_codex":0.00001728057,"about_ca_topic_score_gemma":0.000013395524,"teacher_disagreement_score":0.004085292,"about_ca_system_score_codex":0.000016102618,"about_ca_system_score_gemma":0.000013042817,"threshold_uncertainty_score":0.25836185},"labels":[],"label_agreement":null},{"id":"W1875446523","doi":"","title":"Lessons from taiwan.","year":2003,"lang":"en","type":"letter","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Case fatality rate; CITES; Mortality rate; Medicine; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Demography; Environmental health; Biology; Internal medicine; Population","score_opus":0.04615339849325647,"score_gpt":0.26421633342740614,"score_spread":0.21806293493414966,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1875446523","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0010791563,0.00026390568,0.000020829722,0.954567,0.0017911984,0.00078895333,0.0001503954,0.00015328555,0.041185245],"genre_scores_gemma":[0.002416687,0.000038953585,0.000016150057,0.9602526,0.0054140976,0.0019323877,0.00031080138,0.000069907845,0.029548422],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985316,0.00007198526,0.0002266212,0.00038236624,0.00028195803,0.0005055053],"domain_scores_gemma":[0.9991078,0.000054787957,0.00009675688,0.00053265056,0.00005730691,0.00015069295],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008253568,0.00024878106,0.00042883493,0.00016794178,0.00008695095,0.000031863783,0.00010005601,0.000840832,0.00029762636],"category_scores_gemma":[0.00011238383,0.00020510115,0.00023542334,0.00015370669,0.00007729521,0.00003233571,0.000023023014,0.0016998117,0.000289401],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000024026206,0.000031882948,0.0012781722,0.0000358773,0.00017522229,0.0006077342,0.0000096514295,1.035904e-7,0.00003627247,0.0000051543775,0.98366225,0.014155258],"study_design_scores_gemma":[0.0004053662,0.000011958766,0.049288455,0.000018839763,0.0003099271,0.0000779746,0.000004974267,2.5325758e-7,0.00006350965,0.00012256645,0.9494972,0.00019894009],"about_ca_topic_score_codex":0.00003876704,"about_ca_topic_score_gemma":0.000007261613,"teacher_disagreement_score":0.048010282,"about_ca_system_score_codex":0.00013142143,"about_ca_system_score_gemma":0.00010673839,"threshold_uncertainty_score":0.8363782},"labels":[],"label_agreement":null},{"id":"W1875888840","doi":"10.1080/00325481.2015.1074030","title":"Community-acquired pneumonia: An overview","year":2015,"lang":"en","type":"review","venue":"Postgraduate Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":173,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Mycoplasma pneumoniae; Pneumonia; Community-acquired pneumonia; Intensive care medicine; Chlamydophila pneumoniae; Antimicrobial; Pathogen; Streptococcus pneumoniae; Antibiotics; Immunology; Internal medicine; Chlamydia; Microbiology","score_opus":0.44480682719597825,"score_gpt":0.4887091084328126,"score_spread":0.04390228123683437,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1875888840","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00006282653,0.9880899,0.000005062976,0.0026273855,0.0012175924,0.0016527203,0.000079208876,0.00044267278,0.0058225864],"genre_scores_gemma":[0.000036894788,0.9923974,0.000023521381,0.0018865238,0.0014489484,0.00018877811,0.0014945288,0.00021675751,0.0023066262],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99491096,0.0015751284,0.0014058097,0.00058595947,0.00084613165,0.00067603576],"domain_scores_gemma":[0.99540925,0.00022073239,0.0005766885,0.002113285,0.00049813016,0.0011819397],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0017979246,0.0010173138,0.004948858,0.00075898314,0.00042055172,0.000028959108,0.00055368594,0.0006170356,0.00022194424],"category_scores_gemma":[0.0005051607,0.00065580814,0.0006256961,0.0011972107,0.0005839416,0.00015360753,0.00019622424,0.0017749934,0.0006572325],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015688938,0.0005511716,0.00002491091,0.025790472,0.00051925995,0.00035423422,0.00048264535,1.032879e-7,0.00006628441,0.00017926013,0.0061876173,0.96582836],"study_design_scores_gemma":[0.0011369691,0.0023803762,0.00010161103,0.030625569,0.0054522366,0.0031754884,0.0001325248,0.0000045079623,5.387892e-7,0.00015452864,0.9563018,0.00053382607],"about_ca_topic_score_codex":0.00036226088,"about_ca_topic_score_gemma":0.000054827964,"teacher_disagreement_score":0.96529454,"about_ca_system_score_codex":0.000426272,"about_ca_system_score_gemma":0.0009707721,"threshold_uncertainty_score":0.9995893},"labels":[],"label_agreement":null},{"id":"W1876557048","doi":"10.1111/j.1469-0691.2010.03389.x","title":"Immunity to pneumococcal surface proteins in children with community-acquired pneumonia: a distinct pattern of responses to pneumococcal choline-binding protein A","year":2010,"lang":"en","type":"article","venue":"Clinical Microbiology and Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"Sanofi Pasteur; GlaxoSmithKline","keywords":"Pneumolysin; Streptococcus pneumoniae; Pneumococcal pneumonia; Community-acquired pneumonia; Serology; Antibody; Pneumonia; Immunology; Pneumococcal infections; Medicine; Internal medicine; Biology; Gastroenterology; Microbiology","score_opus":0.027404110389162108,"score_gpt":0.3285456714100096,"score_spread":0.3011415610208475,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1876557048","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961494,0.000004400449,0.00016974683,0.00083292054,0.0002103256,0.002417202,0.000068144655,0.00008760011,0.000060259492],"genre_scores_gemma":[0.9990904,0.0000063655198,0.00015545236,0.0003037598,0.000108471155,0.00015029006,0.00006391343,0.00003013067,0.00009122469],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9972218,0.001073839,0.0008342161,0.00042248104,0.000055185435,0.00039244723],"domain_scores_gemma":[0.9984193,0.0003702956,0.0002070371,0.0005448295,0.00016322035,0.00029532472],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015984959,0.0002920762,0.00072203774,0.00029442948,0.00034123077,0.00001995885,0.00014157174,0.00051790883,0.000024213687],"category_scores_gemma":[0.0009430766,0.0002294425,0.00013192602,0.0005211813,0.0005326726,0.000093721486,0.0002102234,0.0017696475,0.00003315806],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038854007,0.00060925604,0.4887808,0.000029528006,0.000046298566,0.0000022670722,0.000099677476,0.000002320864,0.5091118,0.0000025441718,0.0000020439397,0.00092490646],"study_design_scores_gemma":[0.0018407705,0.0048970655,0.9577145,0.00027234727,0.00006120221,0.00053679384,0.000032227865,0.000004918786,0.033595577,0.000007639603,0.00079121266,0.00024576558],"about_ca_topic_score_codex":0.00067684206,"about_ca_topic_score_gemma":0.002217322,"teacher_disagreement_score":0.47551623,"about_ca_system_score_codex":0.000046601595,"about_ca_system_score_gemma":0.00014742748,"threshold_uncertainty_score":0.9356394},"labels":[],"label_agreement":null},{"id":"W1888465965","doi":"10.1086/377567","title":"Editorial Commentary: Short‐Course Treatment of Community‐Acquired Pneumonia","year":2003,"lang":"en","type":"editorial","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Juravinski Hospital","funders":"","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Intensive care medicine; Course (navigation); Short course; Pediatrics; Internal medicine","score_opus":0.039191123423516216,"score_gpt":0.3992328563930456,"score_spread":0.3600417329695294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1888465965","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.028809583,0.0006540198,0.00000509951,0.00041133646,0.9661519,0.0010893522,0.0015624826,0.0003273081,0.0009889409],"genre_scores_gemma":[0.024252154,0.002547622,0.0000017361559,0.0007782544,0.9697264,0.00022650756,0.0019645216,0.00014461495,0.00035820442],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.994479,0.0015923943,0.0018038326,0.0005649672,0.0009837031,0.000576112],"domain_scores_gemma":[0.99140257,0.0046066144,0.00059831626,0.0016333888,0.0008344771,0.0009246271],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0005310989,0.00081230083,0.0024586446,0.00023833221,0.00053126964,0.000057338733,0.00027311197,0.0019568321,0.00016676082],"category_scores_gemma":[0.0025219512,0.0006799364,0.0018214289,0.00035836105,0.0010079952,0.00010470319,0.00010891303,0.0014060386,0.000079590915],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015597712,0.016970659,0.069260366,0.00024705328,0.0017438638,0.000037199257,0.000048605325,0.000004247229,0.00007562786,0.0000038536223,0.90911126,0.002341272],"study_design_scores_gemma":[0.0049364557,0.010670668,0.013073572,0.0002537326,0.0056329016,0.0000047235703,0.00006018315,0.0000019117049,0.000017707524,0.000105440355,0.96473175,0.00051093614],"about_ca_topic_score_codex":0.00023971256,"about_ca_topic_score_gemma":0.00015398013,"teacher_disagreement_score":0.05618679,"about_ca_system_score_codex":0.0005174853,"about_ca_system_score_gemma":0.0015582656,"threshold_uncertainty_score":0.9995652},"labels":[],"label_agreement":null},{"id":"W1895481656","doi":"10.1371/journal.pone.0136839","title":"Can We Predict Oral Antibiotic Treatment Failure in Children with Fast-Breathing Pneumonia Managed at the Community Level? A Prospective Cohort Study in Malawi","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institutes of Health; National Heart, Lung, and Blood Institute; Bill and Melinda Gates Foundation","keywords":"Pneumonia; Prospective cohort study; Medicine; Cohort study; Intensive care medicine; Antibiotics; Cohort; Community-acquired pneumonia; Pediatrics; Internal medicine; Biology; Microbiology","score_opus":0.05837410943636415,"score_gpt":0.2665502191431951,"score_spread":0.20817610970683095,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1895481656","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99297965,0.000026813506,9.326634e-7,0.0019090401,0.000014167151,0.0043734214,0.00003921079,0.00008364361,0.000573107],"genre_scores_gemma":[0.99884737,0.000015782452,0.00004221159,0.00009255418,0.000038394923,0.00022060085,0.00002936242,0.00003416012,0.00067954947],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982184,0.0004912843,0.00025981353,0.0002903488,0.0004203034,0.00031984187],"domain_scores_gemma":[0.99903053,0.000053253447,0.00008389152,0.0006005909,0.00008035121,0.00015137084],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047443924,0.00025569682,0.00052923564,0.00018985625,0.0002643067,0.00002967979,0.00013378028,0.000081125516,0.000009961252],"category_scores_gemma":[0.000058098685,0.00015249824,0.000040604413,0.0004884702,0.00013679243,0.000080314305,0.00010502049,0.000674527,0.000018038894],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012759995,0.008990669,0.9814908,0.000024034236,0.0009789515,0.00010996763,0.0066366377,0.00004543418,0.0014863011,0.0000031178486,0.000008399727,0.00009811414],"study_design_scores_gemma":[0.0051144245,0.0034432372,0.98586106,0.00029941424,0.0006489094,0.000102883176,0.003654166,0.00006498764,0.00063366024,0.00001405311,0.0000050833137,0.00015813476],"about_ca_topic_score_codex":0.0055384175,"about_ca_topic_score_gemma":0.093212135,"teacher_disagreement_score":0.087673716,"about_ca_system_score_codex":0.0010402839,"about_ca_system_score_gemma":0.00016648101,"threshold_uncertainty_score":0.92333436},"labels":[],"label_agreement":null},{"id":"W1899969203","doi":"10.1155/2003/862856","title":"A Comparison of Bacteremic Pneumococcal Pneumonia with Nonbacteremic Community‐Acquired Pneumonia of Any Etiology — Results from a Canadian Multicenter Study","year":2003,"lang":"en","type":"article","venue":"Canadian Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Pfizer (Canada); Mount Sinai Hospital; University of Alberta","funders":"Memorial University of Newfoundland; University of Toronto; Pfizer Canada; University of Ottawa; University of Alberta; Université de Sherbrooke; Pfizer","keywords":"Medicine; Streptococcus pneumoniae; Pneumonia; Etiology; Internal medicine; Prospective cohort study; Bacteremia; Blood culture; Community-acquired pneumonia; Pneumococcal pneumonia; Gastroenterology; Sepsis; Erythrocyte sedimentation rate; Antibiotics","score_opus":0.04292355429382348,"score_gpt":0.3096082302689027,"score_spread":0.2666846759750792,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1899969203","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957048,0.00013490811,0.000009174219,0.00033574886,0.0004546707,0.00086483354,0.00039693702,0.00002457654,0.0020743348],"genre_scores_gemma":[0.9986885,0.0000085784495,0.00006782895,0.00091791595,0.00013058813,0.00002075719,0.000031986052,0.00007362284,0.000060211703],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9949051,0.0015882053,0.0016650923,0.0004227003,0.0004202337,0.0009986757],"domain_scores_gemma":[0.9945159,0.0003182238,0.00082503015,0.0010374496,0.00076519017,0.0025382135],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0011847832,0.0004815071,0.0012378164,0.0014724286,0.00072780444,0.00005553858,0.00046242637,0.00039237182,0.00024940135],"category_scores_gemma":[0.0005999614,0.00041530447,0.0002392625,0.0006403386,0.00045912675,0.00018277999,0.000028762837,0.0016753307,0.000031540643],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000304038,0.0005316192,0.74437016,0.000029350776,0.00037809415,0.00038082644,0.0028430503,0.00004042877,0.2506721,0.000011409309,0.00011662821,0.00032227405],"study_design_scores_gemma":[0.0063256486,0.0032979003,0.9643702,0.00040093253,0.00039074014,0.00040609553,0.005126695,0.000030084877,0.0027760505,0.000013115759,0.016463917,0.00039863045],"about_ca_topic_score_codex":0.27839053,"about_ca_topic_score_gemma":0.8899564,"teacher_disagreement_score":0.6115659,"about_ca_system_score_codex":0.0010685233,"about_ca_system_score_gemma":0.006568411,"threshold_uncertainty_score":0.9998299},"labels":[],"label_agreement":null},{"id":"W1903183853","doi":"10.1186/1471-2296-6-32","title":"Assessing, treating and preventing community acquired pneumonia in older adults: findings from a community-wide survey of emergency room and family physicians","year":2005,"lang":"en","type":"article","venue":"BMC Family Practice","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University; University of Guelph; St. Joseph’s Healthcare Hamilton","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Family medicine; Community-acquired pneumonia; Pneumonia; Emergency department; Nursing","score_opus":0.06519829965830677,"score_gpt":0.3513778451144916,"score_spread":0.28617954545618485,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1903183853","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963734,0.000756413,0.00018527215,0.00022741391,0.00011172838,0.00043362982,0.00004102521,0.000059808266,0.001811317],"genre_scores_gemma":[0.9971336,0.00029734746,0.0014545365,0.0008737693,0.00005037141,0.000027828453,0.00006234158,0.00003871616,0.00006148001],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99537605,0.003131323,0.0006914718,0.00024811583,0.00024674766,0.00030626426],"domain_scores_gemma":[0.9939832,0.004656941,0.00046953047,0.0005355855,0.0002473798,0.00010736553],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0022501617,0.00026102495,0.00052730984,0.0001784742,0.00062423694,0.00006932502,0.00014877801,0.00016514208,0.00000854666],"category_scores_gemma":[0.004333656,0.00026041872,0.00006857582,0.00047846508,0.000088007284,0.001179165,0.00018900976,0.0009915766,0.0000036284125],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013772283,0.0014424558,0.9084027,0.00021703463,0.00008648082,0.0000054135357,0.007597936,0.000014473914,0.07471714,0.0000029739554,0.00008288256,0.0072927903],"study_design_scores_gemma":[0.0020688146,0.00019821453,0.9694809,0.00094982964,0.0002091076,0.000014317612,0.025481937,0.00071693445,0.00029608855,0.000012069747,0.00035478242,0.00021702475],"about_ca_topic_score_codex":0.026539352,"about_ca_topic_score_gemma":0.008420137,"teacher_disagreement_score":0.074421056,"about_ca_system_score_codex":0.00007805971,"about_ca_system_score_gemma":0.00011881556,"threshold_uncertainty_score":0.9999848},"labels":[],"label_agreement":null},{"id":"W1908431093","doi":"10.1111/j.1440-1843.2012.02227.x","title":"Evaluation of the Japanese Respiratory Society guidelines for the identification of <i>Mycoplasma pneumoniae</i> pneumonia","year":2012,"lang":"en","type":"article","venue":"Respirology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"CAE (Canada)","funders":"","keywords":"Mycoplasma pneumoniae; Pneumonia; Streptococcus pneumoniae; Medicine; Community-acquired pneumonia; Sputum; Bacterial pneumonia; Atypical pneumonia; Viral pneumonia; Sputum culture; Chlamydophila pneumoniae; Mycoplasma; Internal medicine; Etiology; Immunology; Microbiology; Antibiotics; Pathology; Chlamydia; Biology; Coronavirus disease 2019 (COVID-19); Disease; Tuberculosis; Infectious disease (medical specialty)","score_opus":0.14451853067374468,"score_gpt":0.4019613440315238,"score_spread":0.2574428133577791,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1908431093","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98564863,0.0022094205,0.00011397021,0.009311665,0.0010188215,0.0013499506,0.00003316022,0.000026722033,0.00028767748],"genre_scores_gemma":[0.99640167,0.000054713655,0.000027038313,0.0026563567,0.00038394736,0.00028043662,0.000003094196,0.000023665154,0.00016910899],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9975392,0.0003757826,0.0009203905,0.00020067755,0.0006656338,0.00029826758],"domain_scores_gemma":[0.99608403,0.0004757881,0.00062245585,0.00078388216,0.0019666746,0.000067173394],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0051426343,0.00015374525,0.00031126165,0.00006763904,0.00023528519,0.0000052354976,0.00022814744,0.00022270998,0.000026595968],"category_scores_gemma":[0.0024350318,0.00008596935,0.0004134575,0.0003328224,0.00036654217,0.00008603305,0.000067133245,0.00019026388,0.000008269516],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004449146,0.00018080496,0.047544688,0.00008080924,0.00022698862,6.27793e-8,0.0007465688,0.000459236,0.9416905,0.0002364379,0.0036658242,0.0051235883],"study_design_scores_gemma":[0.0049639014,0.00090941304,0.5214702,0.00012524106,0.0053772684,0.0003150691,0.0016365651,0.011002108,0.13198787,0.00063901115,0.32118434,0.00038901088],"about_ca_topic_score_codex":0.00001619183,"about_ca_topic_score_gemma":0.000019737083,"teacher_disagreement_score":0.80970263,"about_ca_system_score_codex":0.00008379878,"about_ca_system_score_gemma":0.00032386024,"threshold_uncertainty_score":0.35057282},"labels":[],"label_agreement":null},{"id":"W1915682891","doi":"10.1007/0-306-46834-4_11","title":"Pathophysiology of Pneumonia and the Clinical Consequences","year":2006,"lang":"en","type":"book-chapter","venue":"Kluwer Academic Publishers eBooks","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen Elizabeth II Health Sciences Centre","funders":"","keywords":"Pneumonia; Pathophysiology; Intensive care medicine; Medicine; Pathology; Internal medicine","score_opus":0.03424137468987808,"score_gpt":0.307846899532152,"score_spread":0.2736055248422739,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1915682891","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.008152395,0.0016063119,0.000008806092,0.004865673,0.0009770468,0.0009039968,0.00004659118,0.0001021555,0.98333704],"genre_scores_gemma":[0.13045491,0.0007777487,0.000038382943,0.010297475,0.0017561443,0.00008621826,0.000056552148,0.00013680622,0.8563958],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99742424,0.00015227393,0.0012078657,0.0005437782,0.0003519149,0.00031989766],"domain_scores_gemma":[0.99774593,0.0006253448,0.00069532264,0.0005210893,0.00021137288,0.00020095488],"candidate_categories":["metaepi_narrow","sts","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.00097446825,0.0004003112,0.0012017402,0.00022984594,0.00013137503,0.000040786326,0.00029960703,0.0016869814,0.00007470798],"category_scores_gemma":[0.00026457955,0.00024728646,0.00046856535,0.000028354467,0.005511063,0.00010916872,0.00016453897,0.0029222092,0.00001902986],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00155249,0.00013417171,0.01044783,0.00096389366,0.0030815268,0.00041890793,0.00089220924,0.000004815519,0.027674105,0.33101997,0.5323357,0.09147439],"study_design_scores_gemma":[0.0029794814,0.00032200725,0.0021089404,0.00036321333,0.0008299082,0.00029055314,0.000031046617,0.000009167069,0.000049966846,0.09791693,0.89473236,0.00036641714],"about_ca_topic_score_codex":0.000041384697,"about_ca_topic_score_gemma":0.0000053231533,"teacher_disagreement_score":0.3623967,"about_ca_system_score_codex":0.00004324203,"about_ca_system_score_gemma":0.00055686047,"threshold_uncertainty_score":0.9999979},"labels":[],"label_agreement":null},{"id":"W1916982429","doi":"10.1093/pch/8.9.566","title":"Should the lateral chest radiograph be routine in the diagnosis of pneumonia in children? A review of the literature","year":2003,"lang":"en","type":"review","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Montreal Children's Hospital; Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine; Western University","funders":"","keywords":"Chest radiograph; Medicine; Pneumonia; Radiography; Radiology; Gold standard (test); Pediatrics; Internal medicine","score_opus":0.035658068926677375,"score_gpt":0.33988089746007283,"score_spread":0.30422282853339544,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1916982429","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0008316992,0.97495466,2.4593194e-7,0.01840537,0.00030634028,0.0049368534,0.0003013497,0.000014084267,0.00024941395],"genre_scores_gemma":[0.002010021,0.98218656,0.0000070394053,0.014808626,0.0003854073,0.00040938615,0.0001262446,0.000053259948,0.000013435289],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.99436164,0.001967278,0.001971128,0.00046162237,0.00068013615,0.0005582075],"domain_scores_gemma":[0.99655044,0.0005725246,0.0013357092,0.0013037773,0.00010707927,0.0001304415],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0030739312,0.0005512968,0.0025008935,0.0006193615,0.0002087695,0.000020943806,0.0007163368,0.00042082058,0.000015100836],"category_scores_gemma":[0.00046516123,0.00023650665,0.0013253795,0.0065159136,0.00016626662,0.00004523723,0.00009216712,0.0028992349,0.0000022122235],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000079699375,0.0015777844,0.6394207,0.23115851,0.0003279435,0.000018863504,0.0019338649,0.000002678203,1.155863e-7,0.00048530355,0.0064249095,0.11864137],"study_design_scores_gemma":[0.0005186779,0.00018210076,0.19320735,0.095251195,0.0009541746,0.00040161647,0.0000137780435,2.2608528e-7,1.0831878e-7,0.000014241118,0.7092416,0.0002148859],"about_ca_topic_score_codex":0.00017106454,"about_ca_topic_score_gemma":0.000085273845,"teacher_disagreement_score":0.7028167,"about_ca_system_score_codex":0.00017259349,"about_ca_system_score_gemma":0.00094777107,"threshold_uncertainty_score":0.9994011},"labels":[],"label_agreement":null},{"id":"W1923166214","doi":"10.1111/j.1365-2958.2010.07199.x","title":"The molecular basis of glycogen breakdown and transport in <i>Streptococcus pneumoniae</i>","year":2010,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Michael Smith Health Research BC; Canadian Lung Association","keywords":"Biology; Streptococcus pneumoniae; Glycogen; Biochemistry; Glucan; Polysaccharide; ATP-binding cassette transporter; Glycogen synthase; Transporter; Gene","score_opus":0.00285510995896083,"score_gpt":0.22197748677024728,"score_spread":0.21912237681128646,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1923166214","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960046,0.00037363174,0.00008103606,0.0018314458,0.00014529777,0.00037629533,0.000023343167,0.000021627407,0.0011427203],"genre_scores_gemma":[0.9989609,0.00005034278,0.00004614014,0.0007993035,0.000014545112,0.00003702554,0.000018207676,0.00001857624,0.000054920598],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99905074,0.00006541364,0.0003058313,0.00026041982,0.000044576584,0.00027303264],"domain_scores_gemma":[0.9993825,0.000045635257,0.00007092033,0.00036058575,0.000061030005,0.00007935615],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017775,0.00015216498,0.00028213675,0.0001021763,0.00006520582,0.000004676628,0.00010718773,0.00021640594,0.000023329643],"category_scores_gemma":[0.000040209212,0.0001077609,0.0001201213,0.00018584813,0.00038825462,0.000015382591,0.000032479966,0.00037451318,0.000007732982],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020076825,0.00007047862,0.054557264,0.000019523972,0.000053359217,0.00017555838,0.00004643726,0.0000026636153,0.943171,0.00052332977,0.000016893086,0.0013433999],"study_design_scores_gemma":[0.0011646047,0.00025244342,0.03798727,0.000025591451,0.00009495814,0.000876445,0.00003002734,0.000005433362,0.8879869,0.00010649906,0.07130784,0.00016201395],"about_ca_topic_score_codex":0.00003761892,"about_ca_topic_score_gemma":0.00015955488,"teacher_disagreement_score":0.07129095,"about_ca_system_score_codex":0.000011361135,"about_ca_system_score_gemma":0.00007955714,"threshold_uncertainty_score":0.43943617},"labels":[],"label_agreement":null},{"id":"W1923664733","doi":"10.1111/j.1469-0691.2006.01638.x","title":"Three vs. 10 days of amoxycillin–clavulanic acid for type 1 acute exacerbations of chronic obstructive pulmonary disease: a randomised, double-blind study","year":2006,"lang":"en","type":"article","venue":"Clinical Microbiology and Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Medicine; Clavulanic acid; Internal medicine; Placebo; Amoxicillin; Surgery; Antibiotics; Randomized controlled trial; Gastroenterology","score_opus":0.05117812135541703,"score_gpt":0.36061511447849737,"score_spread":0.3094369931230803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1923664733","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956581,0.00041839856,0.000957377,0.00013985593,0.00063041574,0.0018738287,0.000072913186,0.000036016703,0.00021307876],"genre_scores_gemma":[0.99892175,0.00015983108,0.000030616462,0.000041954674,0.00033341572,0.0001190786,0.00019005251,0.0000146446755,0.00018867252],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99858004,0.0001062303,0.0007695252,0.00033631516,0.000034285757,0.00017362711],"domain_scores_gemma":[0.99873304,0.00031741022,0.0003091351,0.0002485035,0.0003118576,0.000080031015],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037182932,0.0001617739,0.0005878163,0.00013305966,0.00014361819,0.0000044433696,0.00004637274,0.00027852543,0.00008991144],"category_scores_gemma":[0.00015186293,0.00012844187,0.00024757822,0.00022031981,0.00043908184,0.00006847524,0.000037693382,0.00023396971,0.00000896778],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.043364573,0.0035157804,0.6475484,0.00020429502,0.00083603873,0.000006116383,0.000028374378,0.00004480951,0.30161065,0.00031671862,0.00059592153,0.0019283565],"study_design_scores_gemma":[0.06693398,0.006940309,0.9099796,0.00008420002,0.002191125,0.00010294354,0.000017772301,0.00018357745,0.0046266504,0.00071575644,0.007982424,0.00024167556],"about_ca_topic_score_codex":0.0000348019,"about_ca_topic_score_gemma":0.0001369265,"teacher_disagreement_score":0.29698402,"about_ca_system_score_codex":0.000042193908,"about_ca_system_score_gemma":0.00018677182,"threshold_uncertainty_score":0.5237707},"labels":[],"label_agreement":null},{"id":"W1925728856","doi":"10.1016/j.jtbi.2015.09.026","title":"Modelling the impact of vaccination on curtailing Haemophilus influenzae serotype ‘a’","year":2015,"lang":"en","type":"article","venue":"Journal of Theoretical Biology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Herd immunity; Vaccination; Immunity; Haemophilus influenzae; Immunology; Population; Pathogen; Transmission (telecommunications); Disease Eradication; Medicine; Virology; Biology; Environmental health; Disease; Immune system; Microbiology; Antibiotics; Computer science","score_opus":0.047756503030089124,"score_gpt":0.36587241692743994,"score_spread":0.31811591389735083,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1925728856","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.991958,0.00011551551,0.0036117467,0.00184929,0.00021657231,0.00008575251,0.0000022488855,0.0000057937036,0.0021550474],"genre_scores_gemma":[0.9993695,0.000027215106,0.00009671142,0.00024103175,0.00025195503,7.0938484e-7,7.3747185e-7,0.0000063607026,0.000005767058],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","domain_scores_codex":[0.9991864,0.00015269482,0.00035933225,0.000062971405,0.00011233651,0.0001262603],"domain_scores_gemma":[0.9988959,0.00023617076,0.00021968033,0.00013214722,0.00038538306,0.00013073807],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006750241,0.00008164434,0.00026479995,0.00012596606,0.00003579118,0.0000047494173,0.000093210336,0.000116571726,0.000054169806],"category_scores_gemma":[0.0006021833,0.00003756535,0.00020396788,0.0001227779,0.00016850099,0.000032289026,0.000018396453,0.00035200707,0.000009854672],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0035991773,0.0008511511,0.06033541,0.000038001694,0.0007933949,0.00006096345,0.00091840525,0.36811367,0.051773347,0.50807995,0.0007841644,0.0046523404],"study_design_scores_gemma":[0.008928617,0.038375866,0.01774861,0.00046384637,0.0008045715,0.003355344,0.0005174664,0.21666978,0.021244882,0.68823606,0.0032005603,0.00045438355],"about_ca_topic_score_codex":0.000006426358,"about_ca_topic_score_gemma":1.0643905e-7,"teacher_disagreement_score":0.18015611,"about_ca_system_score_codex":0.0000757242,"about_ca_system_score_gemma":0.0001667539,"threshold_uncertainty_score":0.15318705},"labels":[],"label_agreement":null},{"id":"W1932283798","doi":"10.1046/j.1469-0691.8.s.2.5.x","title":"Surveillance of resistance in bacteria causing community‐acquired respiratory tract infections","year":2002,"lang":"en","type":"review","venue":"Clinical Microbiology and Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":82,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital","funders":"","keywords":"Moraxella catarrhalis; Streptococcus pneumoniae; Antibiotic resistance; Respiratory tract infections; Antibiotics; Haemophilus influenzae; Penicillin; Empiric therapy; Drug resistance; Biology; Microbiology; Medicine; Intensive care medicine; Internal medicine; Respiratory system","score_opus":0.13288857921430972,"score_gpt":0.40967515241901886,"score_spread":0.2767865732047091,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1932283798","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.13180262,0.8647566,0.000017650476,0.000048741877,0.0013920807,0.00086620083,0.00008652756,0.00008812062,0.0009414499],"genre_scores_gemma":[0.021076513,0.97817725,0.000014176688,0.00019170264,0.00023043308,0.00004733857,0.00010831996,0.000036819973,0.000117466334],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9949865,0.002571189,0.0017288364,0.00040523038,0.000031118147,0.00027717103],"domain_scores_gemma":[0.9971614,0.0013682515,0.00073493633,0.00050965586,0.00011652949,0.00010926635],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0015090482,0.00035955198,0.0022230097,0.00048047613,0.00024259415,0.000011786908,0.000062135936,0.0013681519,0.00007516382],"category_scores_gemma":[0.00089215796,0.00030418107,0.00053121714,0.0005782975,0.00071093446,0.00008406179,0.00007312407,0.0015795749,0.000027256288],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018458314,0.01281343,0.48569226,0.037294663,0.0014008497,0.00009182162,0.00025537962,0.0000020202974,0.006471921,0.00020765584,0.0025154445,0.45306998],"study_design_scores_gemma":[0.0007996169,0.00086765963,0.055987246,0.005395845,0.00033342856,0.00034365078,0.0000040467157,3.7437994e-7,0.000004133524,0.000016345688,0.9359924,0.00025523538],"about_ca_topic_score_codex":0.000049697403,"about_ca_topic_score_gemma":0.00067095994,"teacher_disagreement_score":0.933477,"about_ca_system_score_codex":0.000142987,"about_ca_system_score_gemma":0.00020331817,"threshold_uncertainty_score":0.99994105},"labels":[],"label_agreement":null},{"id":"W1936019997","doi":"10.1093/pch/12.7.579","title":"A Canadian perspective on the American Academy of Pediatrics guidelines for acute otitis media","year":2007,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"London Health Sciences Centre; Western University","funders":"","keywords":"Otitis; Medicine; Perspective (graphical); Acute otitis media; Pediatrics; Computer science; Surgery; Artificial intelligence","score_opus":0.04293462444079591,"score_gpt":0.3951197107352952,"score_spread":0.3521850862944993,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1936019997","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.270297,0.0028326511,0.0011095428,0.7155189,0.0010649104,0.002668396,0.0009977566,0.00014015523,0.0053707343],"genre_scores_gemma":[0.8854221,0.0066999723,0.0009973552,0.10190601,0.0047563664,0.0000481367,0.0000328038,0.000064942666,0.000072320996],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9978645,0.000060727096,0.0006332979,0.0003248215,0.00040581982,0.000710836],"domain_scores_gemma":[0.99719304,0.0008185336,0.000440382,0.00023234992,0.0005482782,0.000767398],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013493872,0.00021240684,0.000503188,0.00070431834,0.00047562816,0.000010237082,0.00017256447,0.00011902915,0.000015667443],"category_scores_gemma":[0.001653282,0.00014893933,0.00022956608,0.0013415284,0.00012408433,0.000033642315,0.000021775799,0.0005907222,0.000017886929],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00060044246,0.0009304625,0.40621302,0.0005323776,0.0006458059,0.000073691284,0.009087713,0.00007867615,0.00020413288,0.12829044,0.41840267,0.034940552],"study_design_scores_gemma":[0.002412972,0.002667625,0.8050002,0.00010327695,0.0008538675,0.00017020215,0.004511992,0.00007756536,0.00018040753,0.0024375606,0.1809884,0.00059596094],"about_ca_topic_score_codex":0.025291303,"about_ca_topic_score_gemma":0.025436768,"teacher_disagreement_score":0.6151251,"about_ca_system_score_codex":0.0008830067,"about_ca_system_score_gemma":0.0015134752,"threshold_uncertainty_score":0.99234647},"labels":[],"label_agreement":null},{"id":"W1941261466","doi":"10.1007/bf03404320","title":"Invasive Pneumococcal Infections in Canadian Children, 1998–2003 Implications for New Vaccination Programs","year":2007,"lang":"en","type":"article","venue":"Canadian Journal of Public Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Alberta Children's Hospital; University of Calgary; Izaak Walton Killam Health Centre; Dalhousie University; BC Children's Hospital; University of British Columbia","funders":"","keywords":"Vaccination; Pneumococcal vaccination; Medicine; Pneumococcal infections; Pneumococcal disease; Streptococcus pneumoniae; Pediatrics; Virology; Microbiology; Biology; Antibiotics","score_opus":0.05266491068413756,"score_gpt":0.33492431976584575,"score_spread":0.2822594090817082,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1941261466","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.85342795,0.0005218839,0.0052225757,0.13613537,0.00091870193,0.0021592237,0.000084827516,0.000027180131,0.0015022901],"genre_scores_gemma":[0.9954094,0.000058956215,0.00026883627,0.0034514444,0.00054564164,0.000023985142,0.00008162501,0.000025259862,0.00013480014],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978643,0.00006802233,0.00071170216,0.00016290604,0.000104854196,0.0010881928],"domain_scores_gemma":[0.9922068,0.0000774085,0.000273552,0.00018750392,0.000630332,0.0066243946],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017913281,0.0001380106,0.000299983,0.0021806573,0.00043358645,0.00007389219,0.0001254071,0.00015677891,0.000038596063],"category_scores_gemma":[0.0015218863,0.0001344425,0.00011201029,0.0016317,0.000042299678,0.00024784214,0.0000033613744,0.00045225673,0.000008741154],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000017931302,0.0000761111,0.91607684,0.000021619395,0.000040858435,0.000012203747,0.0004081203,0.000005563322,0.000050641873,0.0026975046,0.0036041625,0.07700459],"study_design_scores_gemma":[0.0008062842,0.00054143515,0.76363015,0.0000484345,0.000013861517,0.0009780532,0.00012441323,0.0000037245725,0.000004174232,0.00018044602,0.23358466,0.0000843647],"about_ca_topic_score_codex":0.5492699,"about_ca_topic_score_gemma":0.9947825,"teacher_disagreement_score":0.44551256,"about_ca_system_score_codex":0.003368289,"about_ca_system_score_gemma":0.076433845,"threshold_uncertainty_score":0.9288019},"labels":[],"label_agreement":null},{"id":"W1941372568","doi":"10.1111/j.1469-0691.2004.00752.x","title":"Clinical and bacteriological efficacy of the ketolide telithromycin against isolates of key respiratory pathogens: a pooled analysis of phase III studies","year":2004,"lang":"en","type":"article","venue":"Clinical Microbiology and Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Telithromycin; Ketolide; Moraxella catarrhalis; Streptococcus pneumoniae; Erythromycin; Microbiology; Respiratory tract infections; Chronic bronchitis; Penicillin; Haemophilus influenzae; Pharyngitis; Medicine; Bronchitis; Streptococcus pyogenes; Antibacterial agent; Pneumonia; Antibiotics; Biology; Internal medicine; Staphylococcus aureus; Respiratory system; Bacteria","score_opus":0.06071764946085919,"score_gpt":0.39503109273018017,"score_spread":0.334313443269321,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1941372568","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980144,0.00095338875,0.000052056017,0.00026832687,0.000323933,0.0003017919,0.000035118355,0.000018119617,0.00003289061],"genre_scores_gemma":[0.9962586,0.0028802082,0.0000381259,0.0007145722,0.00007869464,0.0000058179835,0.000011155719,0.0000060682764,0.000006732933],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9973681,0.0005936914,0.0015213464,0.0003407177,0.00002939831,0.00014672524],"domain_scores_gemma":[0.9975979,0.001207025,0.0005961527,0.00028543608,0.00023483233,0.00007870161],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011955975,0.00015772275,0.0012611315,0.00018451961,0.000102532285,0.0000022097172,0.00005240217,0.00046053436,0.0000117993195],"category_scores_gemma":[0.0025430287,0.00009334282,0.0005373216,0.0004575207,0.0024907999,0.00003622342,0.00010630318,0.0003988512,9.925304e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003749006,0.0010173618,0.56050104,0.00005199389,0.0021755202,0.0000015058978,0.00008190061,0.00001655581,0.4319641,0.000051602576,0.000012999284,0.0037505142],"study_design_scores_gemma":[0.0073606595,0.0034724222,0.9764335,0.00017922335,0.0034681724,0.000023128257,0.00005865453,0.000012370596,0.0071814456,0.000060174334,0.0016445351,0.00010568167],"about_ca_topic_score_codex":0.000013069759,"about_ca_topic_score_gemma":0.000038378617,"teacher_disagreement_score":0.42478263,"about_ca_system_score_codex":0.000014812297,"about_ca_system_score_gemma":0.00009394851,"threshold_uncertainty_score":0.91774553},"labels":[],"label_agreement":null},{"id":"W1960725767","doi":"10.1111/j.1469-0691.2011.03629.x","title":"Failure to elicit seroresponses to pneumococcal surface proteins (pneumococcal histidine triad D, pneumococcal choline-binding protein A, and serine proteinase precursor A) in children with pneumococcal bacteraemia","year":2011,"lang":"en","type":"article","venue":"Clinical Microbiology and Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"","keywords":"Streptococcus pneumoniae; Antibody; Pneumococcal infections; Immunology; Biology; Bacteremia; Medicine; Internal medicine; Microbiology; Antibiotics","score_opus":0.030049862496066743,"score_gpt":0.29894142111193867,"score_spread":0.26889155861587194,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1960725767","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98893434,0.000028003145,0.00020712128,0.0020432638,0.00023493562,0.008125246,0.00007723393,0.00025049347,0.00009938854],"genre_scores_gemma":[0.99664044,0.000048042406,0.0010044432,0.00040563848,0.00035725656,0.00089453213,0.0000899321,0.00008800348,0.00047169116],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.995328,0.00076068233,0.0013598342,0.0014952249,0.00011535934,0.00094087626],"domain_scores_gemma":[0.9977623,0.00020426132,0.00030764472,0.0005604957,0.00023840423,0.0009268752],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0012460125,0.0007421712,0.0013062942,0.00057700375,0.00036160753,0.000059412072,0.00017447628,0.00094178657,0.00009722237],"category_scores_gemma":[0.0008904235,0.0005915612,0.00020558605,0.0008552447,0.00064174295,0.0002915843,0.00028093936,0.0016241699,0.00012461403],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023375999,0.0007177202,0.40711004,0.00007089779,0.000113545844,0.000028613786,0.00013440511,0.0000062694708,0.5882665,0.000021808373,0.000016839875,0.0011757677],"study_design_scores_gemma":[0.005003563,0.010310819,0.91891974,0.0005471836,0.0001572325,0.0019241846,0.000030310624,0.000015036212,0.056346364,0.00002040658,0.005991648,0.00073349173],"about_ca_topic_score_codex":0.00015310559,"about_ca_topic_score_gemma":0.000527496,"teacher_disagreement_score":0.53192014,"about_ca_system_score_codex":0.0001760397,"about_ca_system_score_gemma":0.00026657834,"threshold_uncertainty_score":0.9996536},"labels":[],"label_agreement":null},{"id":"W1963957882","doi":"10.1097/01.md.0000164302.03972.d7","title":"Bacteremic Pneumococcal Pneumonia","year":2005,"lang":"en","type":"article","venue":"Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; Alberta Hospital Edmonton","funders":"","keywords":"Medicine; Pneumonia; Streptococcus pneumoniae; Pneumonia severity index; Intensive care unit; Chest radiograph; Pneumococcal pneumonia; Emergency department; Incidence (geometry); Internal medicine; Pediatrics; Prospective cohort study; Ambulatory; Mortality rate; Emergency medicine; Antibiotics; Lung; Community-acquired pneumonia","score_opus":0.019263714883071933,"score_gpt":0.30400088204786907,"score_spread":0.28473716716479713,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1963957882","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8914473,0.0002172522,0.00010137375,0.06792364,0.00041410545,0.00025230754,0.0000019394315,0.00023425953,0.03940783],"genre_scores_gemma":[0.98736614,0.00007978034,0.00006713633,0.0060325824,0.0021640412,0.000020982216,0.000013693642,0.000026297292,0.00422934],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988424,0.000028938259,0.00031556346,0.0002495819,0.0002615524,0.00030197552],"domain_scores_gemma":[0.9991546,0.00005070025,0.000056351942,0.0003551072,0.000079474165,0.00030375004],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00017517817,0.00017239111,0.0003399583,0.00019858658,0.000103876955,0.000005247031,0.000079431215,0.000104459294,0.0016038644],"category_scores_gemma":[0.0001234126,0.00011836113,0.000082031256,0.00027443847,0.00018103917,0.00007271674,0.000024438881,0.0003222405,0.0008514059],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022615794,0.00012538105,0.03506976,0.000031558407,0.000038158654,0.000057642927,0.00020401043,0.0000034830546,0.9424299,0.0001694179,0.0028596886,0.018988403],"study_design_scores_gemma":[0.001345655,0.0004133861,0.36930084,0.00012270769,0.00009603382,0.000641568,0.000048138907,0.00010264151,0.0018072726,0.000029307668,0.6259831,0.00010933482],"about_ca_topic_score_codex":0.000012676474,"about_ca_topic_score_gemma":0.000014508454,"teacher_disagreement_score":0.9406226,"about_ca_system_score_codex":0.00009636719,"about_ca_system_score_gemma":0.00007020736,"threshold_uncertainty_score":0.99992657},"labels":[],"label_agreement":null},{"id":"W1964058917","doi":"10.1139/w05-118","title":"Assessment of real-time PCR for diagnosis of<i>Mycoplasma pneumoniae</i>pneumonia in pediatric patients","year":2006,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Mycoplasma pneumoniae; Microbiology; 16S ribosomal RNA; Serology; Pneumonia; Primer (cosmetics); Biology; Virology; Titer; Mycoplasma pneumonia; Polymerase chain reaction; Real-time polymerase chain reaction; Mycoplasma; Antibody; Medicine; Bacteria; Gene; Immunology; Chemistry; Internal medicine","score_opus":0.007775796500970382,"score_gpt":0.24278204539318562,"score_spread":0.23500624889221525,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1964058917","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979232,0.00014738318,0.000008342043,0.00042825096,0.00039391257,0.00029577984,0.00024366989,0.000002941116,0.0005565546],"genre_scores_gemma":[0.9992888,0.00011127404,0.00022409148,0.00009371533,0.0001435134,0.0000120888135,0.000035802208,0.000018100749,0.00007263861],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985453,0.00008530138,0.00084912084,0.00013734894,0.00005463673,0.00032831862],"domain_scores_gemma":[0.9984781,0.00019059476,0.0005522534,0.00014342328,0.00041546082,0.0002201777],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027287265,0.00014057038,0.00058747735,0.00080717995,0.000047810317,0.0000040670957,0.00012623279,0.00018456162,0.000057839665],"category_scores_gemma":[0.00010354282,0.00012303605,0.00021280903,0.00028210774,0.00011479931,0.000043940072,0.000009172989,0.00020213002,0.0000033966085],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012817897,0.00015272772,0.8310025,0.00007405742,0.000033085613,0.00003057339,0.000029204113,0.0000644802,0.16660728,0.00003670614,0.0018264644,0.00013013154],"study_design_scores_gemma":[0.002553697,0.0016789259,0.98111844,0.000114020906,0.00020596327,0.000402438,0.000017725557,0.000008259266,0.0036704983,0.000053670916,0.010036372,0.00014000795],"about_ca_topic_score_codex":0.0015127714,"about_ca_topic_score_gemma":0.008622319,"teacher_disagreement_score":0.16293678,"about_ca_system_score_codex":0.00022854713,"about_ca_system_score_gemma":0.0016032379,"threshold_uncertainty_score":0.50172645},"labels":[],"label_agreement":null},{"id":"W1964198220","doi":"10.3791/50490","title":"Characterization of Inflammatory Responses During Intranasal Colonization with &lt;em&gt;Streptococcus pneumoniae&lt;/em&gt;","year":2014,"lang":"en","type":"article","venue":"Journal of Visualized Experiments","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; McMaster University; Lung Health Foundation; University of Pennsylvania","keywords":"Streptococcus pneumoniae; Colonization; Microbiology; Biology; Immune system; Nasal administration; Pneumonia; Pathogen; Pneumococcal infections; Meningitis; Pneumolysin; Immunology; Virulence; Respiratory tract; Antibiotics; Medicine; Respiratory system; Gene","score_opus":0.014172169071149519,"score_gpt":0.33409142911125284,"score_spread":0.3199192600401033,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1964198220","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99741876,0.00005782698,0.0014062608,0.00014422939,0.00036619933,0.00042416976,0.000006542219,0.000044512683,0.00013149816],"genre_scores_gemma":[0.99896497,0.00008145658,0.00014346365,0.00014984354,0.00034310433,0.000025339315,0.000014109144,0.000051754185,0.00022595817],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975393,0.00029459468,0.0009950764,0.00020652839,0.00069384836,0.00027069275],"domain_scores_gemma":[0.9977278,0.000064634274,0.0010970574,0.0002641413,0.0006025662,0.00024379225],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004413073,0.00025594182,0.00062077027,0.0005365965,0.00016628957,0.00004622276,0.00013172334,0.00016321968,0.00009504498],"category_scores_gemma":[0.00019476961,0.00020146873,0.00015968627,0.000358012,0.00010092785,0.00036621053,0.00003471496,0.00023669124,0.000009121559],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015643985,0.00046798633,0.03212276,0.00010839674,0.00023593313,0.00005779464,0.0019333635,0.000026049576,0.9630963,0.00006006818,0.000026630516,0.00030032353],"study_design_scores_gemma":[0.0061944844,0.0020438135,0.23168643,0.0006181251,0.00017987404,0.00026618986,0.0002484226,0.00013563091,0.7538414,0.000007157738,0.0045585553,0.00021992775],"about_ca_topic_score_codex":8.6194495e-7,"about_ca_topic_score_gemma":0.0000029840655,"teacher_disagreement_score":0.2092549,"about_ca_system_score_codex":0.00016290383,"about_ca_system_score_gemma":0.00024778137,"threshold_uncertainty_score":0.8215657},"labels":[],"label_agreement":null},{"id":"W1964274190","doi":"10.1159/000086922","title":"Effects of Clarithromycin on Inflammatory Cell Mediator Release and Survival","year":2005,"lang":"en","type":"article","venue":"Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; University of Alberta","funders":"Abbott Laboratories","keywords":"Mediator; Clarithromycin; Inflammatory mediator; Pharmacology; Chemistry; Inflammation; Medicine; Microbiology; Biology; Antibiotics; Immunology; Internal medicine","score_opus":0.0052036288195604265,"score_gpt":0.23798146169133497,"score_spread":0.23277783287177453,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1964274190","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954925,0.0002720687,0.000042284115,0.0018950888,0.000120570185,0.00023516122,0.0000014844042,0.000049944174,0.001890879],"genre_scores_gemma":[0.9958506,0.00048913964,0.00010301954,0.0027382604,0.00034062425,0.000007456103,0.0000015059563,0.000025198762,0.0004441872],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99940693,0.000029137984,0.00015028332,0.00014631455,0.0001388326,0.00012847416],"domain_scores_gemma":[0.99950314,0.00010982602,0.00005643098,0.00016808281,0.00003223986,0.00013031013],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007677458,0.00011365328,0.00021727172,0.00007705243,0.000038476694,0.0000039996576,0.000033119555,0.00011059144,0.00005495251],"category_scores_gemma":[0.000022353015,0.000091324386,0.00005997999,0.00007547808,0.00008191727,0.000031330273,0.0000065874365,0.00015600791,0.000028457676],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012296847,0.0003651008,0.011862478,0.0003002542,0.000049897044,0.000014334453,0.00028387996,0.000004463391,0.97146803,0.00010669839,0.001182658,0.014239227],"study_design_scores_gemma":[0.003970126,0.0004365564,0.10865541,0.00007878464,0.000037487207,0.0000096416015,0.000028502349,0.00003892244,0.82860583,0.000032726053,0.057990544,0.00011548134],"about_ca_topic_score_codex":0.000002852063,"about_ca_topic_score_gemma":0.000002443644,"teacher_disagreement_score":0.14286222,"about_ca_system_score_codex":0.000029028392,"about_ca_system_score_gemma":0.000054307508,"threshold_uncertainty_score":0.37241003},"labels":[],"label_agreement":null},{"id":"W1964404407","doi":"10.1128/jb.00788-06","title":"Characterization of the <i>Moraxella catarrhalis</i> Opa-Like Protein, OlpA, Reveals a Phylogenetically Conserved Family of Outer Membrane Proteins","year":2006,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Moraxella catarrhalis; Biology; Bacterial outer membrane; Moraxella (Branhamella) catarrhalis; Bacterial adhesin; Neisseria; Membrane protein; Microbiology; Conserved sequence; Protein family; Pilus; Peptide sequence; Bacteria; Gene; Virulence; Genetics; Haemophilus influenzae; Escherichia coli; Membrane","score_opus":0.012321691449260375,"score_gpt":0.23154615503151524,"score_spread":0.21922446358225486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1964404407","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966609,0.000056660432,0.0001609032,0.0018580778,0.00033371078,0.0006387535,0.000045510147,0.0000064324563,0.0002390491],"genre_scores_gemma":[0.9984257,0.000029236762,0.00020195075,0.00077596976,0.00027539476,0.000014545767,0.00001179187,0.000017185084,0.00024817727],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9981677,0.0002682129,0.001046652,0.00012930718,0.00020187341,0.00018624915],"domain_scores_gemma":[0.9979188,0.00004120069,0.0011147604,0.00028878893,0.00056131935,0.00007514006],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003427792,0.00015211567,0.0006416083,0.00014160703,0.000050918934,0.000006482211,0.00017096565,0.00018159779,0.000045907254],"category_scores_gemma":[0.00009129568,0.00009434024,0.0002619248,0.00019163666,0.00029880076,0.000059669106,0.00004269801,0.00026626306,0.000002733595],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023160776,0.00025290085,0.02431826,0.00016796675,0.00008637902,0.000029871104,0.00004559906,0.0000047470567,0.9746217,0.000101818085,0.00004040967,0.00009873595],"study_design_scores_gemma":[0.0012089483,0.00092018466,0.5916947,0.00030533804,0.00013361099,0.0006802201,0.000014000235,0.0000040730047,0.40100497,0.000079275655,0.0038721794,0.00008247231],"about_ca_topic_score_codex":0.000040777097,"about_ca_topic_score_gemma":0.000009653548,"teacher_disagreement_score":0.57361674,"about_ca_system_score_codex":0.00003166568,"about_ca_system_score_gemma":0.00029323617,"threshold_uncertainty_score":0.38470834},"labels":[],"label_agreement":null},{"id":"W1964812940","doi":"10.1097/inf.0b013e3181cffa2a","title":"Effectiveness of Pneumococcal Conjugate Vaccine Using a 2+1 Infant Schedule in Quebec, Canada","year":2010,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Institut National de Santé Publique du Québec; Université Laval; Centre hospitalier universitaire de Québec","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Pediatrics; Booster dose; Logistic regression; Medical record; Vaccination; Immunization; Streptococcus pneumoniae; Internal medicine; Antibiotics; Immunology","score_opus":0.005815012499122896,"score_gpt":0.24926154002402345,"score_spread":0.24344652752490056,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1964812940","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975577,0.00015124802,0.000064489024,0.00033075,0.0012494058,0.00045229844,0.000012406812,0.000025057752,0.00015665658],"genre_scores_gemma":[0.9989048,0.00006391592,0.000006862485,0.00012825361,0.00082590594,0.00001686628,0.0000018336757,0.0000259578,0.000025591184],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99831146,0.0002989649,0.000497586,0.00017745214,0.00034771246,0.00036684948],"domain_scores_gemma":[0.9983618,0.00036150138,0.0002691368,0.00030245484,0.00026322826,0.00044184734],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007564906,0.00020716236,0.0003919547,0.0003363815,0.00028485895,0.00003533275,0.00012578588,0.000089362504,0.00010768162],"category_scores_gemma":[0.00059590413,0.0001386503,0.00017654167,0.00063085434,0.000061992694,0.00013128782,0.000050526316,0.0011610411,0.0000044172975],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022614292,0.00029446327,0.94252765,0.00021532095,0.0000634919,0.00022487332,0.000037943963,0.0013439923,0.054921363,0.000045629517,0.000038057722,0.000061074854],"study_design_scores_gemma":[0.0024572622,0.000097411525,0.994078,0.000070506736,0.0005013297,0.001158027,0.000027586393,0.0005805949,0.00046716968,0.00018219622,0.00021047184,0.00016946491],"about_ca_topic_score_codex":0.18361561,"about_ca_topic_score_gemma":0.42234156,"teacher_disagreement_score":0.23872595,"about_ca_system_score_codex":0.000295152,"about_ca_system_score_gemma":0.004115233,"threshold_uncertainty_score":0.82182074},"labels":[],"label_agreement":null},{"id":"W1965049312","doi":"10.5539/jfr.v4n1p58","title":"Mechanism of Resistance to Macrolide-Lincosamide-Streptogramin Antibiotics in Streptococcus thermophilus","year":2014,"lang":"en","type":"article","venue":"Journal of Food Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Lincomycin; 23S ribosomal RNA; Lincosamides; Microbiology; Spiramycin; Biology; Mutant; Josamycin; Tylosin; Tetracycline; Telithromycin; Antibiotics; Genetics; Erythromycin; Gene; Ribosome","score_opus":0.05214894878341018,"score_gpt":0.37272697664755716,"score_spread":0.32057802786414696,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1965049312","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99307907,0.00011744571,0.00051726983,0.0027000988,0.00017666191,0.000367242,0.0000074580767,0.0000075241624,0.003027257],"genre_scores_gemma":[0.99892247,0.000074135736,0.00033996414,0.00011680596,0.0002642759,0.0000015423686,5.172342e-7,0.00002048209,0.0002598162],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997477,0.00034232903,0.0007023591,0.00016544037,0.0009218511,0.0003910349],"domain_scores_gemma":[0.99794936,0.0003312593,0.00020883449,0.00034934637,0.0008658419,0.00029533685],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0025860418,0.00011537417,0.00044475577,0.000998802,0.00007607347,0.000021227015,0.00023827235,0.00013270337,0.000036124624],"category_scores_gemma":[0.001265685,0.000086613974,0.00016004009,0.0009433612,0.00011827978,0.00006061777,0.000073311356,0.00084767904,0.0000140595],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004950215,0.0007884892,0.0221552,0.0002740658,0.00014207594,0.00020521907,0.0005484528,0.0000929708,0.96258694,0.004659242,0.00083797175,0.0072143404],"study_design_scores_gemma":[0.0046749404,0.01374368,0.10346823,0.0021291655,0.00007683798,0.0002505643,0.0008109292,0.00016683142,0.84359604,0.011114744,0.019674523,0.0002935303],"about_ca_topic_score_codex":0.000008614473,"about_ca_topic_score_gemma":0.00014003985,"teacher_disagreement_score":0.11899093,"about_ca_system_score_codex":0.00013292137,"about_ca_system_score_gemma":0.00032706407,"threshold_uncertainty_score":0.36827907},"labels":[],"label_agreement":null},{"id":"W1965482015","doi":"10.1016/j.jinf.2004.03.009","title":"Activity of telithromycin against key pathogens associated with community-acquired respiratory tract infections","year":2004,"lang":"en","type":"article","venue":"Journal of Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Telithromycin; Respiratory tract infections; Respiratory tract; Medicine; Key (lock); Microbiology; Respiratory system; Intensive care medicine; Streptococcus pneumoniae; Antibiotics; Biology; Internal medicine","score_opus":0.032449467573224026,"score_gpt":0.2915702595560468,"score_spread":0.2591207919828228,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1965482015","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961542,0.00003071931,0.0014335049,0.0002259472,0.00037057057,0.00022602586,0.000011228436,0.000060371825,0.0014874435],"genre_scores_gemma":[0.9994025,0.0000618596,0.000041406754,0.00026254822,0.00017686577,0.0000064050796,0.000004539297,0.000028413013,0.000015468311],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983374,0.00039619056,0.00059058174,0.00010277428,0.000368049,0.00020502093],"domain_scores_gemma":[0.9976338,0.00017062176,0.00095031725,0.00026744042,0.0007983422,0.00017947596],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00095276214,0.00019381131,0.0005207831,0.0005596673,0.0003746001,0.000019679746,0.00005442328,0.00021378075,0.000017630438],"category_scores_gemma":[0.000602877,0.00014867104,0.0003135327,0.0007650994,0.00017447853,0.00040409507,0.000018029714,0.0008779096,0.0000048206766],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015519788,0.0062557696,0.40235573,0.00007339458,0.0004538835,0.00006284391,0.00047645875,0.002676323,0.58561856,0.000029934228,0.00004151898,0.001800385],"study_design_scores_gemma":[0.0038196596,0.007246447,0.9537221,0.000766572,0.00035997372,0.0006378605,0.00008757026,0.0000074735735,0.03179626,0.00007776047,0.001321189,0.00015714076],"about_ca_topic_score_codex":0.00013763849,"about_ca_topic_score_gemma":0.0002753312,"teacher_disagreement_score":0.5538223,"about_ca_system_score_codex":0.00054874725,"about_ca_system_score_gemma":0.00058016623,"threshold_uncertainty_score":0.60626286},"labels":[],"label_agreement":null},{"id":"W1965849654","doi":"10.1159/000079817","title":"Experience with Levofloxacin in a Critical Pathway for the Treatment of Community-Acquired Pneumonia","year":2004,"lang":"en","type":"article","venue":"Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Cefuroxime; Levofloxacin; Azithromycin; Medicine; Community-acquired pneumonia; Pneumonia; Internal medicine; Antibiotics; Pneumonia severity index; Intensive care medicine","score_opus":0.05754459353878305,"score_gpt":0.3604757835274795,"score_spread":0.30293118998869645,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1965849654","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923636,0.0001417233,0.0011333567,0.0055780783,0.000048280537,0.00051011064,0.0000058063006,0.000024656614,0.00019441346],"genre_scores_gemma":[0.9980711,0.00012748552,0.00017353069,0.0012554099,0.00004401799,0.00024665878,0.0000019817405,0.000016509444,0.00006330796],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99949527,0.000025811554,0.00015757557,0.00008365591,0.00008370899,0.00015397125],"domain_scores_gemma":[0.99935395,0.00019042127,0.000028091374,0.00033003837,0.000049224516,0.00004829334],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000065454085,0.00010595609,0.00020461953,0.00004565625,0.00013323045,0.0000065694235,0.0000636456,0.000048083566,0.000015888418],"category_scores_gemma":[0.00002333942,0.00005757333,0.000072560964,0.0001518445,0.00025901536,0.000030359191,0.0000029692605,0.000060970513,0.0000013991253],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006959058,0.0044285976,0.015859874,0.00008975813,0.000108280896,0.000018281666,0.042845413,0.00007940696,0.9135556,0.0010040434,0.000017073007,0.021297764],"study_design_scores_gemma":[0.01737307,0.011607093,0.18626027,0.00024106754,0.00006851959,0.00013531093,0.007481068,0.0000712125,0.7200422,0.00074905076,0.055697925,0.0002732093],"about_ca_topic_score_codex":0.00010165721,"about_ca_topic_score_gemma":0.00008902867,"teacher_disagreement_score":0.1935134,"about_ca_system_score_codex":0.00009720339,"about_ca_system_score_gemma":0.000089852896,"threshold_uncertainty_score":0.23477721},"labels":[],"label_agreement":null},{"id":"W1965907646","doi":"10.1038/srep01079","title":"Solution structure of the Big domain from Streptococcus pneumoniae reveals a novel Ca2+-binding module","year":2013,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Structural Genomics Consortium; University of Toronto","funders":"National Key Research and Development Program of China; Goddard Space Flight Center","keywords":"Streptococcus pneumoniae; Domain (mathematical analysis); Protein structure; Immunoglobulin domain; Binding domain; Computational biology; Protein domain; Pathogenesis; Pyrin domain; Chemistry; Plasma protein binding; Biology; Binding site; Biophysics; Cell biology; Antibody; Receptor; Biochemistry; Gene; Genetics; Bacteria; Immunology","score_opus":0.016291913435801997,"score_gpt":0.24460565639951343,"score_spread":0.22831374296371143,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1965907646","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99108505,0.000034621924,0.00012121023,0.00059074943,0.006564432,0.00090291013,0.000039696857,0.000050259772,0.0006110899],"genre_scores_gemma":[0.99769014,7.2577745e-7,0.00013959645,0.00006993341,0.0001679266,0.00002957626,0.000034748926,0.000015982725,0.0018513406],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9979977,0.00004642709,0.00057667546,0.00053284573,0.0005523045,0.0002940308],"domain_scores_gemma":[0.9979643,0.00002845895,0.000473035,0.0011336135,0.00025802237,0.00014254481],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003278931,0.00015529804,0.00026768527,0.00015665776,0.000454873,0.00009467465,0.0001161572,0.00013116673,0.00022328958],"category_scores_gemma":[0.00018423244,0.00009783915,0.0001820124,0.00061051844,0.00032736055,0.00012330635,0.00009659191,0.00022527634,0.000022615974],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000010060509,0.00006676271,0.10744732,0.000020172996,0.000030507314,0.0000151083395,0.00020413312,0.000028187542,0.8894279,0.000014756259,0.0022441638,0.00049998995],"study_design_scores_gemma":[0.0005637945,0.00006931029,0.6620342,0.00041299287,0.00014214026,0.0003892417,0.00029466074,0.00015393864,0.30877423,0.011358328,0.01552202,0.00028514364],"about_ca_topic_score_codex":0.00026446686,"about_ca_topic_score_gemma":0.00013463142,"teacher_disagreement_score":0.58065367,"about_ca_system_score_codex":0.000097000906,"about_ca_system_score_gemma":0.00025086277,"threshold_uncertainty_score":0.39897648},"labels":[],"label_agreement":null},{"id":"W1966140900","doi":"10.1097/inf.0b013e318187ad5a","title":"The Changing Burden of Pediatric Bloodstream Infections in Calgary, Canada, 2000–2006","year":2009,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Intensive care medicine; Medicine; Bloodstream infection","score_opus":0.005476881655886983,"score_gpt":0.23332058535954592,"score_spread":0.22784370370365895,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1966140900","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99109095,0.0021992817,0.00006183288,0.003367562,0.0010512118,0.00041866454,0.000017217688,0.00005138273,0.0017419204],"genre_scores_gemma":[0.99204755,0.0027978125,0.000002806991,0.00040914907,0.0042226063,0.000020911482,0.0000023720843,0.00002163725,0.0004751464],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978042,0.0002016431,0.0006426775,0.00018455026,0.0005337864,0.00063311023],"domain_scores_gemma":[0.9982916,0.00031199216,0.00036153986,0.00035243307,0.00024547437,0.0004369303],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00060811103,0.00024411593,0.00029962818,0.0006184377,0.0011664769,0.00006209206,0.0001914292,0.00008406139,0.00005430465],"category_scores_gemma":[0.0004911881,0.00014619887,0.00025522767,0.0017240355,0.000066514236,0.00010390051,0.000039603452,0.00090208184,0.000011016626],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000452322,0.00046074498,0.99100477,0.000034374003,0.00006796766,0.00020945504,0.0003215582,0.0018831398,0.000045856366,0.00008869463,0.0038398826,0.0019983586],"study_design_scores_gemma":[0.002953736,0.0007701076,0.9827459,0.000037890448,0.0021495023,0.0033577385,0.00039539448,0.00072466966,0.000013832614,0.0010408338,0.0053966786,0.00041374695],"about_ca_topic_score_codex":0.016827134,"about_ca_topic_score_gemma":0.01641909,"teacher_disagreement_score":0.008258867,"about_ca_system_score_codex":0.00044247284,"about_ca_system_score_gemma":0.0034209276,"threshold_uncertainty_score":0.9897199},"labels":[],"label_agreement":null},{"id":"W1966166051","doi":"10.1016/j.idc.2004.08.003","title":"Epidemiology and etiology of community-acquired pneumonia","year":2004,"lang":"en","type":"review","venue":"Infectious Disease Clinics of North America","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":93,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Epidemiology; Pneumonia; Etiology; Seriousness; Community-acquired pneumonia; Intensive care medicine; Disease; Coronavirus disease 2019 (COVID-19); Coronavirus; Pediatrics; Internal medicine; Infectious disease (medical specialty)","score_opus":0.0775281738500472,"score_gpt":0.4048759553696835,"score_spread":0.3273477815196363,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1966166051","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.024292799,0.9731224,0.00008634459,0.00012275974,0.0004439888,0.0010834229,0.00047032975,0.00011295277,0.00026500528],"genre_scores_gemma":[0.020284519,0.9783205,0.000035205023,0.0006468298,0.000113080976,0.00012549254,0.00038015452,0.00006854521,0.000025691603],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99542505,0.001596083,0.002058269,0.0003773843,0.00013673594,0.0004065042],"domain_scores_gemma":[0.9931665,0.0029280733,0.0019816316,0.0010693182,0.00026929769,0.00058515364],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005156397,0.00052304077,0.004337514,0.0004941678,0.00019116403,0.0000024143592,0.00021592912,0.0004114184,0.000032126994],"category_scores_gemma":[0.0030013914,0.00043407842,0.0011786905,0.00060291326,0.0018099457,0.00004256343,0.00020059718,0.00097309606,0.000031405725],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007063448,0.0015334993,0.15776365,0.03657534,0.0010776471,0.00004083715,0.00006324389,0.00003545005,7.694308e-7,0.000057863865,0.000051770076,0.8027293],"study_design_scores_gemma":[0.0009451994,0.0029322435,0.114542775,0.00640464,0.0055686496,0.00024358174,0.000013782377,0.000004517767,5.2858258e-8,0.00045626287,0.86843294,0.00045534372],"about_ca_topic_score_codex":0.00015684559,"about_ca_topic_score_gemma":0.000046771216,"teacher_disagreement_score":0.8683812,"about_ca_system_score_codex":0.000103082006,"about_ca_system_score_gemma":0.0014248466,"threshold_uncertainty_score":0.9998111},"labels":[],"label_agreement":null},{"id":"W1966332197","doi":"10.1089/mdr.2011.0197","title":"Baseline Epidemiology of <i>Streptococcus pneumoniae</i> Serotypes in Canada Prior to the Introduction of the 13-Valent Pneumococcal Vaccine","year":2011,"lang":"en","type":"article","venue":"Microbial Drug Resistance","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; University of Manitoba; Shared Health; Health Sciences Centre","funders":"Centers for Disease Control and Prevention; University of Manitoba","keywords":"Streptococcus pneumoniae; Serotype; Broth microdilution; Microbiology; Pneumococcal infections; Epidemiology; Antimicrobial; Pneumococcal vaccine; Virology; Medicine; Biology; Antibiotics; Internal medicine; Minimum inhibitory concentration","score_opus":0.014436649628096083,"score_gpt":0.23168267265422562,"score_spread":0.21724602302612955,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1966332197","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9737303,0.0002596993,0.000034169847,0.024136467,0.0006017842,0.00093374506,0.00005624341,0.000012031698,0.0002355484],"genre_scores_gemma":[0.9974656,0.000040029878,0.000067798755,0.0011512572,0.000240145,0.00005084151,0.0000049458713,0.0000172351,0.0009621114],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9980519,0.00039186855,0.0007795462,0.00032241494,0.0001418778,0.00031240616],"domain_scores_gemma":[0.9985892,0.00017859043,0.00029219437,0.00067829783,0.00017370627,0.00008802123],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007490317,0.00017590607,0.0004948938,0.00007957205,0.000096491654,0.000001242039,0.0002737945,0.000062740335,0.00006960374],"category_scores_gemma":[0.0005807382,0.00010479476,0.00012614811,0.0005196285,0.00009775737,0.00003031894,0.000088212495,0.00033282273,0.000005895567],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034658538,0.00019492411,0.41283613,0.000205476,0.000049937244,0.000007622305,0.0005750823,0.00025675184,0.564826,0.00011295353,0.02004866,0.00053983653],"study_design_scores_gemma":[0.0006740539,0.000058847232,0.8056723,0.00019655992,0.000069310554,0.00001851194,0.00015334706,0.000011929482,0.11340784,0.000031833373,0.07957304,0.00013243471],"about_ca_topic_score_codex":0.10604662,"about_ca_topic_score_gemma":0.8855757,"teacher_disagreement_score":0.7795291,"about_ca_system_score_codex":0.00026766612,"about_ca_system_score_gemma":0.0007196268,"threshold_uncertainty_score":0.8999063},"labels":[],"label_agreement":null},{"id":"W1968507919","doi":"10.1016/j.carres.2013.05.007","title":"Structure, biosynthesis, and function of bacterial capsular polysaccharides synthesized by ABC transporter-dependent pathways","year":2013,"lang":"en","type":"review","venue":"Carbohydrate Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":219,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"ATP-binding cassette transporter; Glycolipid; Lipid II; Escherichia coli; Chemistry; Bacterial outer membrane; Glycosyltransferase; Neisseria meningitidis; Biosynthesis; Bacteria; Biochemistry; Virulence; Bacterial cell structure; Neisseria; Microbiology; Bacterial capsule; Lipid A; Phosphatidylglycerol; Cytoplasm; Transporter; Biology; Membrane; Gene; Phospholipid; Genetics","score_opus":0.09392665449983799,"score_gpt":0.3522914785178127,"score_spread":0.25836482401797467,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1968507919","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.066166334,0.93020713,0.0000071807863,0.00004698322,0.0004234119,0.0021367085,0.0008053467,0.00006944642,0.00013747528],"genre_scores_gemma":[0.036494896,0.962308,0.000009134656,0.000012965407,0.00037617885,0.00025207308,0.0002451312,0.00012039959,0.00018124592],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99602336,0.0007288433,0.0009480987,0.00075625,0.0008548809,0.0006885613],"domain_scores_gemma":[0.9976179,0.0005241652,0.00028606117,0.0007585874,0.0003672309,0.00044604624],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00081200333,0.0005449304,0.0021787924,0.0009356519,0.00024366636,0.000089097426,0.00024203841,0.0008388512,0.00069160975],"category_scores_gemma":[0.00025303697,0.0003908506,0.00044421255,0.00067547034,0.0004616666,0.0001206433,0.00007866578,0.0011332602,0.00004514199],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000044549764,0.00011812965,0.000017826218,0.011391251,0.00059929537,0.000046956342,0.000048679016,4.628247e-8,0.646822,0.000048996564,0.00023148728,0.3406308],"study_design_scores_gemma":[0.0011691118,0.000950167,0.000066651286,0.010932788,0.003249785,0.00017818341,0.00012132559,0.000006992619,0.041021295,0.00014337357,0.94132143,0.00083890266],"about_ca_topic_score_codex":0.00016076145,"about_ca_topic_score_gemma":0.000012598037,"teacher_disagreement_score":0.9410899,"about_ca_system_score_codex":0.000191533,"about_ca_system_score_gemma":0.00083292794,"threshold_uncertainty_score":0.9998543},"labels":[],"label_agreement":null},{"id":"W1970284883","doi":"10.1179/joc.2006.18.4.366","title":"Application of Two Methods to Determine Killing of<i>Streptococcus pneumoniae</i>by Various Fluoroquinolones","year":2006,"lang":"en","type":"article","venue":"Journal of Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal University Hospital","funders":"","keywords":"Streptococcus pneumoniae; Gatifloxacin; Moxifloxacin; Microbiology; Levofloxacin; Antimicrobial; Minimum inhibitory concentration; Ofloxacin; Drug; Antibiotics; Multiple drug resistance; Drug resistance; Streptococcaceae; Biology; Pharmacology; Ciprofloxacin","score_opus":0.011953478913849845,"score_gpt":0.334304866985249,"score_spread":0.3223513880713992,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970284883","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8703576,0.0005139888,0.1263519,0.0020249672,0.00013752292,0.0002916157,0.0000051020206,0.000015211851,0.000302097],"genre_scores_gemma":[0.984881,0.00012401136,0.013906452,0.00060622895,0.0003147829,0.000010082397,0.000001733505,0.000028081122,0.00012766186],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987147,0.00005574353,0.00074319006,0.00011305974,0.00022944686,0.00014385034],"domain_scores_gemma":[0.9986305,0.0000992679,0.0006405679,0.00021502096,0.00031969382,0.000094909614],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003620055,0.00012953348,0.00050037913,0.00021414395,0.000031691583,0.000005897255,0.00011001488,0.00008029331,0.00002071348],"category_scores_gemma":[0.000026401221,0.000101243386,0.00021309292,0.00028399823,0.0000557883,0.000058969188,0.000008996921,0.00016370915,0.000001782281],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048112866,0.00027895026,0.02457013,0.000038295533,0.00007328194,0.00000344564,0.00009646215,0.00013779629,0.896089,0.000023917313,0.00039190907,0.07824869],"study_design_scores_gemma":[0.0019365863,0.00088168716,0.014533017,0.000105362225,0.00010569439,0.00020565373,0.000016913928,0.00023977348,0.92699516,0.0004834312,0.054388583,0.00010815183],"about_ca_topic_score_codex":0.00002876819,"about_ca_topic_score_gemma":0.00000307719,"teacher_disagreement_score":0.114523366,"about_ca_system_score_codex":0.000046221692,"about_ca_system_score_gemma":0.00007726117,"threshold_uncertainty_score":0.41285855},"labels":[],"label_agreement":null},{"id":"W1970341126","doi":"10.1016/j.rcc.2004.10.008","title":"The Utility of Administrative Data in Helping the Clinician Understand and Treat Community-acquired Pneumonia","year":2005,"lang":"en","type":"review","venue":"Respiratory Care Clinics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Capital District Health Authority","funders":"","keywords":"Medicine; Data quality; Quality (philosophy); Pneumonia; Medical emergency; Business; Service (business)","score_opus":0.43186497836605375,"score_gpt":0.5070213258059343,"score_spread":0.07515634743988053,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970341126","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0029740315,0.9919043,0.000003716445,0.00022667083,0.00035597893,0.001746808,0.0005796984,0.00004304964,0.0021657257],"genre_scores_gemma":[0.01008022,0.98857164,0.000008662079,0.0006826707,0.0003380282,0.00005451397,0.00013804444,0.000070348055,0.00005587474],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9932441,0.0031606895,0.0021607848,0.0006083142,0.00039297206,0.00043314815],"domain_scores_gemma":[0.9888277,0.006033905,0.0010531542,0.0036592404,0.00022655759,0.00019945051],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0035687566,0.0005676127,0.0021292672,0.00017785803,0.00092665845,0.00007699655,0.0010445454,0.00070143386,0.000012716778],"category_scores_gemma":[0.0017520859,0.00032004708,0.00047949282,0.0005953559,0.0014169175,0.0001184325,0.0006380306,0.002103629,0.000008847565],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005840412,0.00021076613,0.0017999726,0.005876583,0.0002818489,0.000037227957,0.001036494,2.0695114e-7,0.000002422455,0.000048278158,0.00025263237,0.9903952],"study_design_scores_gemma":[0.00066099584,0.00060203864,0.0017184346,0.0055083735,0.0012506231,0.000045645484,0.007250629,0.000014300029,0.0000010157218,0.000020345527,0.9826537,0.00027393026],"about_ca_topic_score_codex":0.00003294655,"about_ca_topic_score_gemma":0.0023797543,"teacher_disagreement_score":0.99012125,"about_ca_system_score_codex":0.00023102369,"about_ca_system_score_gemma":0.00255809,"threshold_uncertainty_score":0.99992514},"labels":[],"label_agreement":null},{"id":"W1970411568","doi":"10.1016/s1098-3015(10)72921-1","title":"PIN14 REDUCTION OF ACUTE OTITIS MEDIA IN CHILDREN: A COST-CONSEQUENCE ANALYSIS OF A 7-, 10-AND 13-VALENT PNEUMOCOCCAL CONJUGATE VACCINE IN CANADA","year":2010,"lang":"en","type":"article","venue":"Value in Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Acute otitis media; Pneumococcal conjugate vaccine; Conjugate; Reduction (mathematics); Medicine; Otitis; Conjugate vaccine; Pediatrics; Streptococcus pneumoniae; Microbiology; Immunology; Mathematics; Surgery; Biology; Immunization","score_opus":0.014390081505446545,"score_gpt":0.2774793763016168,"score_spread":0.26308929479617027,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970411568","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99680847,0.00013755528,0.0000026581567,0.0021306935,0.00019681781,0.00058928295,0.00009615115,0.000006814278,0.00003154588],"genre_scores_gemma":[0.99915284,0.0005359554,0.00003773407,0.00016610442,0.000030630606,0.00003321584,0.000026326832,0.000009073194,0.000008116128],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99828327,0.00016543687,0.0008121519,0.00025767987,0.00021141699,0.00027006064],"domain_scores_gemma":[0.99915045,0.00010894618,0.00024573435,0.00025067895,0.00006824495,0.00017593155],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00055168837,0.00012367466,0.0006627002,0.0008358664,0.000025173267,0.0000024467545,0.00006201454,0.000085648186,0.00004967691],"category_scores_gemma":[0.00015303989,0.00011517633,0.000056834815,0.0013455423,0.00007623479,0.000045438457,0.000020837688,0.00042430637,6.089269e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006372531,0.00013441336,0.96050686,0.00010442361,0.00014638982,0.000038478916,0.00046197293,0.001556969,0.036202837,0.000049719616,0.00001809184,0.00071613386],"study_design_scores_gemma":[0.0013264347,0.0001713465,0.99357617,0.00019295995,0.0001477956,0.00018495834,0.00008490821,0.0027851537,0.0013713064,0.00002955107,0.000047426955,0.00008199279],"about_ca_topic_score_codex":0.86860144,"about_ca_topic_score_gemma":0.8747997,"teacher_disagreement_score":0.03483153,"about_ca_system_score_codex":0.00037481554,"about_ca_system_score_gemma":0.0022295823,"threshold_uncertainty_score":0.46967545},"labels":[],"label_agreement":null},{"id":"W1970439098","doi":"10.1097/inf.0b013e31817cf76f","title":"Pneumonia After Implementation of the Pneumococcal Conjugate Vaccine Program in the Province of Quebec, Canada","year":2008,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":109,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Institut National de Santé Publique du Québec; Université Laval","funders":"","keywords":"Medicine; Pneumonia; Pneumococcal conjugate vaccine; Lobar pneumonia; Empyema; Pneumococcal pneumonia; Case fatality rate; Epidemiology; Pediatrics; Population; Streptococcus pneumoniae; Pneumococcal vaccine; Vaccination; Internal medicine; Surgery; Environmental health; Antibiotics; Immunology","score_opus":0.006051827767435804,"score_gpt":0.25406169297298087,"score_spread":0.24800986520554508,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970439098","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99481887,0.00022780389,0.000006264109,0.0034026809,0.00033482313,0.001068199,0.000022838918,0.000014690694,0.00010384828],"genre_scores_gemma":[0.9985296,0.00024613866,0.0000016160127,0.0005584085,0.00047961515,0.000099486504,0.0000016650971,0.00001452544,0.0000689261],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99816513,0.00032012482,0.00058700336,0.00012361808,0.0005227124,0.0002814301],"domain_scores_gemma":[0.99877113,0.00013790982,0.00041658006,0.00033462266,0.00019875426,0.00014100617],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003393389,0.00016282388,0.00023661589,0.000121159224,0.00033774215,0.000016667756,0.00020638677,0.0000400098,0.00006573977],"category_scores_gemma":[0.000105639876,0.00007575052,0.0001993622,0.00057511055,0.00009896162,0.00008579903,0.000045141845,0.0005172464,0.0000017128705],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008452844,0.00035265862,0.9971353,0.00007510831,0.00004354398,0.00015387546,0.00031303856,0.0001285777,0.00043117796,0.000010948491,0.00073277287,0.0005384797],"study_design_scores_gemma":[0.0011034211,0.00018774919,0.9962333,0.000019415034,0.0003903696,0.00077092386,0.00019879489,0.000023637844,0.00006447786,0.000057883724,0.0008667965,0.00008324727],"about_ca_topic_score_codex":0.05073286,"about_ca_topic_score_gemma":0.39984378,"teacher_disagreement_score":0.3491109,"about_ca_system_score_codex":0.00019855727,"about_ca_system_score_gemma":0.0035626495,"threshold_uncertainty_score":0.9555884},"labels":[],"label_agreement":null},{"id":"W1971108513","doi":"10.1001/archinte.162.9.1059","title":"Causes of Death for Patients With Community-Acquired Pneumonia","year":2002,"lang":"en","type":"article","venue":"Archives of Internal Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":379,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Agency for Healthcare Research and Quality","keywords":"Pneumonia; Medicine; Cause of death; Proportional hazards model; Internal medicine; Intensive care medicine; Pediatrics; Disease","score_opus":0.029326376731910374,"score_gpt":0.2827482448845957,"score_spread":0.25342186815268536,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971108513","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9908347,0.00009452288,0.0007598805,0.00064163137,0.000112685426,0.00033795927,0.000028804187,0.000019886817,0.007169928],"genre_scores_gemma":[0.9986157,0.000044768803,0.00032272024,0.0004031478,0.000074507094,0.000016809894,0.000014159599,0.000017399721,0.00049079664],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991621,0.000057238864,0.00035335126,0.00009714549,0.00018507373,0.00014511152],"domain_scores_gemma":[0.99889565,0.00041362958,0.00019057277,0.00027683796,0.00011471307,0.000108617256],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000065306056,0.00012482614,0.00039735687,0.00019865547,0.000064741485,0.000001253025,0.00012862062,0.000026888167,0.0000684217],"category_scores_gemma":[0.00022105593,0.00007691495,0.000080898244,0.00008045089,0.00041829684,0.000034952,0.000032831405,0.0001390058,0.0000016651824],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000729093,0.0013155685,0.8330527,0.00059938815,0.0004002178,0.000008353132,0.0038020695,0.000004136637,0.15158033,0.00028347998,0.0002597628,0.007964887],"study_design_scores_gemma":[0.0074700504,0.015498657,0.9585505,0.0032013115,0.00031544812,0.000053322467,0.00041574676,0.00023228464,0.008164295,0.00030073314,0.005662075,0.0001355773],"about_ca_topic_score_codex":0.00015478386,"about_ca_topic_score_gemma":0.0000208843,"teacher_disagreement_score":0.14341603,"about_ca_system_score_codex":0.000009513585,"about_ca_system_score_gemma":0.000013194628,"threshold_uncertainty_score":0.31365004},"labels":[],"label_agreement":null},{"id":"W1971322784","doi":"10.1128/jcm.02473-08","title":"Utility of the Pneumoslide Test in Identification of <i>Streptococcus pneumoniae</i> in Blood Cultures and Its Relation to Capsular Serotype","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta","funders":"","keywords":"Streptococcus pneumoniae; Serotype; Microbiology; Blood culture; Streptococcaceae; Identification (biology); Biology; Pneumococcal infections; Virology; Medicine; Antibiotics","score_opus":0.02696831663618283,"score_gpt":0.3597595413834189,"score_spread":0.3327912247472361,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971322784","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99596083,0.00018134069,0.0000040620967,0.0033286102,0.00017733894,0.0002778843,0.0000106494235,0.0000022183078,0.000057052297],"genre_scores_gemma":[0.9993374,0.00013850757,0.000018687177,0.0004208772,0.000054541535,8.1062217e-7,0.0000011779359,0.0000032638811,0.000024776724],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.997773,0.00025035933,0.0016836708,0.00013324617,0.00005373561,0.00010600647],"domain_scores_gemma":[0.9984758,0.0003150198,0.00075693,0.00015797376,0.00023159328,0.00006266752],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010679048,0.000080028716,0.00049638475,0.00012263063,0.000018994111,0.0000025111776,0.00010160723,0.00021163412,0.0000063412567],"category_scores_gemma":[0.002654844,0.000050437804,0.00014013013,0.00027465605,0.000087786146,0.000049152368,0.000023448762,0.0004725403,0.0000013793884],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003907831,0.0003514024,0.44544747,0.0000126035675,0.000011014298,0.0000036778024,0.000064518084,0.000012270974,0.55372643,0.0000123462205,0.000023138928,0.00029605825],"study_design_scores_gemma":[0.0010832483,0.00077728694,0.9272776,0.00016252996,0.00006489664,0.00014179057,0.00003064929,0.000011060728,0.069801055,0.000118825665,0.0004924343,0.00003857182],"about_ca_topic_score_codex":0.000004972759,"about_ca_topic_score_gemma":0.00004154056,"teacher_disagreement_score":0.48392534,"about_ca_system_score_codex":0.000010671151,"about_ca_system_score_gemma":0.00011794798,"threshold_uncertainty_score":0.3178288},"labels":[],"label_agreement":null},{"id":"W1971826196","doi":"10.1016/j.amjmed.2004.03.029","title":"Patients admitted to hospital with suspected pneumonia and normal chest radiographs: Epidemiology, microbiology, and outcomes","year":2004,"lang":"en","type":"article","venue":"The American Journal of Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":182,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Pneumonia; Chest radiograph; Community-acquired pneumonia; Streptococcus pneumoniae; Radiography; Internal medicine; Bacterial pneumonia; Sputum; Surgery; Pathology; Tuberculosis; Antibiotics","score_opus":0.008602093558834133,"score_gpt":0.26888340917197057,"score_spread":0.26028131561313644,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971826196","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92433655,0.0003205692,0.00011104451,0.074820295,0.00013980329,0.00022094426,0.00000445313,0.000014997787,0.00003136172],"genre_scores_gemma":[0.99092084,0.00026988648,0.0003927878,0.008206605,0.00017658058,0.0000035882952,0.0000027149872,0.000015183979,0.000011816801],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988662,0.00014012662,0.00045977253,0.00015556932,0.00011373614,0.0002645727],"domain_scores_gemma":[0.9984653,0.0002995323,0.00048277326,0.00017448382,0.00020853325,0.0003693852],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005222396,0.00018782368,0.00082890317,0.00028640468,0.00011820325,0.000003550515,0.00010082818,0.00003665259,0.000007167641],"category_scores_gemma":[0.0005692569,0.000085340704,0.00006231583,0.00043632288,0.0019193847,0.000046775873,0.00003258773,0.0003912454,0.0000016671779],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003385662,0.00013318505,0.9807857,0.00000978943,0.00031154155,0.000060626317,0.00075624406,0.0000063770462,0.011610859,0.000024448302,0.00016191347,0.0058007347],"study_design_scores_gemma":[0.0043623587,0.016029188,0.97393906,0.0001859956,0.00030138207,0.0022656072,0.0007835344,5.735492e-7,0.000066776214,0.000046342833,0.0019181726,0.00010101683],"about_ca_topic_score_codex":0.000106089385,"about_ca_topic_score_gemma":0.000018343984,"teacher_disagreement_score":0.06661369,"about_ca_system_score_codex":0.000042909895,"about_ca_system_score_gemma":0.000072872914,"threshold_uncertainty_score":0.7072053},"labels":[],"label_agreement":null},{"id":"W1971876314","doi":"10.1097/md.0b013e318190f444","title":"Long-Term Morbidity and Mortality After Hospitalization With Community-Acquired Pneumonia","year":2008,"lang":"en","type":"article","venue":"Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":179,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Health","funders":"","keywords":"Medicine; Pneumonia; Pneumonia severity index; Hazard ratio; Community-acquired pneumonia; Confidence interval; Cohort study; Mortality rate; Population; Cohort; Pediatrics; Internal medicine","score_opus":0.03794408247140836,"score_gpt":0.2993573627217658,"score_spread":0.2614132802503574,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971876314","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961228,0.0002533031,0.0004274298,0.0015198214,0.00015206388,0.00032717205,0.0000050017325,0.000116589494,0.0010758648],"genre_scores_gemma":[0.99764097,0.00023293534,0.000015475804,0.0014396827,0.00023087965,0.000041993168,0.000054333927,0.00002264505,0.0003210943],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990025,0.00010658426,0.00023072325,0.00018245759,0.0002830112,0.00019471049],"domain_scores_gemma":[0.999107,0.00004092261,0.000071639035,0.00044277715,0.00012058874,0.00021705318],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019381985,0.0001784641,0.00034569186,0.00011287675,0.00031387087,0.0000053048616,0.000052587136,0.000084643005,0.0001294466],"category_scores_gemma":[0.00005764112,0.00011697767,0.000031150306,0.00025326063,0.00069276686,0.000100094265,0.00003473919,0.00023045568,0.000010630826],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005861965,0.00017482173,0.98737645,0.00013935975,0.000067293804,0.0003720116,0.0010389047,9.211287e-7,0.010428783,0.000008634213,0.00009970648,0.00023449081],"study_design_scores_gemma":[0.0016427663,0.0011218964,0.99463534,0.00027474563,0.00019574285,0.0009529003,0.00007868666,0.000019228493,0.00029196285,0.000013499243,0.00064459856,0.0001286498],"about_ca_topic_score_codex":0.00024059352,"about_ca_topic_score_gemma":0.00019478414,"teacher_disagreement_score":0.010136819,"about_ca_system_score_codex":0.00004215199,"about_ca_system_score_gemma":0.00005319879,"threshold_uncertainty_score":0.4770211},"labels":[],"label_agreement":null},{"id":"W1971945861","doi":"10.4161/hv.7.4.14141","title":"Acute otitis media and its prevention by immunization: A survey of Canadian pediatricians’ knowledge, attitudes and beliefs","year":2011,"lang":"en","type":"article","venue":"Human Vaccines","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Institut National de Santé Publique du Québec","funders":"GlaxoSmithKline","keywords":"Medicine; Acute otitis media; Immunization; Otitis; Medical prescription; Family medicine; Pediatrics; Adverse effect; Multivariate analysis; Pneumococcal conjugate vaccine; Immunology; Antibiotics; Internal medicine; Streptococcus pneumoniae; Surgery","score_opus":0.05734017980258541,"score_gpt":0.3039299727532077,"score_spread":0.2465897929506223,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971945861","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99374026,0.0033457817,0.0000042261754,0.00008555825,0.000120170786,0.00019665858,0.000059761074,0.000024661658,0.0024229344],"genre_scores_gemma":[0.9974321,0.0014330901,0.000013736562,0.000042424614,0.00008137289,0.0000096924105,0.000085904016,0.000014758509,0.00088690635],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994018,0.000056371242,0.0002034343,0.00014679742,0.000056636167,0.0001349542],"domain_scores_gemma":[0.99939716,0.000033207973,0.00006643766,0.000119057266,0.00021970939,0.00016445197],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013506497,0.0001051256,0.00020230566,0.00037860835,0.00016371967,0.000009185832,0.000043362663,0.00008386913,0.00017913558],"category_scores_gemma":[0.000069348906,0.00009405566,0.000023041372,0.00036645768,0.000026917745,0.00009017038,0.000024766065,0.00007793331,0.000007075023],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000092708,0.00013997518,0.98908526,0.00014523989,0.00010267987,0.0000066393413,0.0011799169,4.48803e-8,0.00584623,0.00031477195,0.002706724,0.00046324806],"study_design_scores_gemma":[0.00061425345,0.00020690597,0.9971221,0.000059795166,0.000111351,0.000031726475,0.000021371321,0.0000029440848,0.0007633359,0.00003619754,0.00093957654,0.00009044224],"about_ca_topic_score_codex":0.01356,"about_ca_topic_score_gemma":0.24821758,"teacher_disagreement_score":0.23465757,"about_ca_system_score_codex":0.0000157503,"about_ca_system_score_gemma":0.00009649807,"threshold_uncertainty_score":0.9930088},"labels":[],"label_agreement":null},{"id":"W1972668326","doi":"10.1111/j.1532-5415.2007.01070.x","title":"Pneumonia and Lower Respiratory Infections in Nursing Home Residents: Predictors of Hospitalization and Mortality","year":2007,"lang":"en","type":"article","venue":"Journal of the American Geriatrics Society","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Pneumonia; Odds ratio; Chest radiograph; Internal medicine; Heart failure; Emergency medicine","score_opus":0.008347019039006746,"score_gpt":0.2998808679477773,"score_spread":0.29153384890877054,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1972668326","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99810594,0.00041081084,0.00040149648,0.00038094202,0.00047585875,0.00013512289,0.0000038012108,0.000008478646,0.000077529505],"genre_scores_gemma":[0.9986439,0.00072282436,0.00008938231,0.0003120009,0.00020909755,7.868985e-7,2.0675671e-7,0.0000125792,0.000009225083],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99881023,0.00007655484,0.00054853957,0.00011015494,0.00029633846,0.00015818213],"domain_scores_gemma":[0.9986229,0.00010345849,0.00079230656,0.00016319104,0.00020144008,0.00011672405],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008698827,0.00010425655,0.00032895623,0.00016221557,0.000111519534,0.000014394912,0.00006369564,0.00006650221,0.0000015926895],"category_scores_gemma":[0.00019493602,0.00007528827,0.00019015667,0.00090450794,0.00047515385,0.00013206417,0.000034562716,0.00031882332,9.329065e-8],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025643836,0.00019931507,0.97667485,0.0000312995,0.00007340592,0.0000056310796,0.0007221599,0.000032242067,0.021393752,0.000018899822,0.00023254733,0.0005902285],"study_design_scores_gemma":[0.0005979712,0.0005728682,0.99710804,0.000121002646,0.00019157128,0.000120782905,0.0006111379,0.00001767455,0.00020608028,0.00014042645,0.00024265995,0.000069802576],"about_ca_topic_score_codex":0.00004895196,"about_ca_topic_score_gemma":0.0000123086975,"teacher_disagreement_score":0.021187672,"about_ca_system_score_codex":0.0001837951,"about_ca_system_score_gemma":0.00015512982,"threshold_uncertainty_score":0.30701664},"labels":[],"label_agreement":null},{"id":"W1973585377","doi":"10.1007/s11908-005-0031-z","title":"The use of macrolides in treatment of upper respiratory tract infections","year":2005,"lang":"en","type":"article","venue":"Current Infectious Disease Reports","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Health Sciences Centre","funders":"","keywords":"Moraxella catarrhalis; Streptococcus pyogenes; Streptococcus pneumoniae; Azithromycin; Microbiology; Haemophilus influenzae; Respiratory tract infections; Clarithromycin; Ketolide; Antibiotic resistance; Antibiotics; Mycoplasma pneumoniae; Macrolide Antibiotics; Drug resistance; Biology; Medicine; Erythromycin; Pneumonia; Bacteria; Respiratory system; Internal medicine; Staphylococcus aureus","score_opus":0.05831939110855895,"score_gpt":0.3378493955603976,"score_spread":0.2795300044518387,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1973585377","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952497,0.002617357,0.000018289691,0.00024264534,0.00070772285,0.00067528454,0.000018672083,0.000072409006,0.00039791863],"genre_scores_gemma":[0.9979946,0.0014215563,0.0000030293265,0.000057696878,0.00020066627,0.00016605266,0.000007598499,0.000021900754,0.00012687064],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982121,0.0001063007,0.00085018395,0.0002673594,0.00028225844,0.00028179566],"domain_scores_gemma":[0.998229,0.00025200364,0.0004501411,0.0006014307,0.00021355902,0.00025383855],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018476292,0.00020568345,0.00036941387,0.00031965395,0.00015537796,0.000020868147,0.000027947053,0.000074807474,0.00004868495],"category_scores_gemma":[0.00048268528,0.0001400253,0.00038212974,0.00040961258,0.00014273539,0.00016319861,0.000018742552,0.00016279898,0.000009217896],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036191457,0.0058171884,0.966333,0.00006897341,0.00009106588,0.00007932127,0.0000655087,0.0007714473,0.0010903535,0.00006645586,0.00029150367,0.025289027],"study_design_scores_gemma":[0.00061078387,0.00040918164,0.59389114,0.00011799684,0.00021170119,0.0001455289,0.0000058603714,0.000047631853,0.00068217656,0.00004812123,0.40372837,0.00010148622],"about_ca_topic_score_codex":0.00006401448,"about_ca_topic_score_gemma":0.000106266314,"teacher_disagreement_score":0.40343687,"about_ca_system_score_codex":0.00044310692,"about_ca_system_score_gemma":0.00049267476,"threshold_uncertainty_score":0.57100654},"labels":[],"label_agreement":null},{"id":"W1973721561","doi":"10.1155/2013/720975","title":"CXCR1/CXCR2 Antagonism Is Effective in Pulmonary Defense against<i>Klebsiella pneumoniae</i>Infection","year":2013,"lang":"en","type":"article","venue":"BioMed Research International","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Royal University Hospital","funders":"Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China; National Science Foundation","keywords":"Algorithm; Medicine; Computer science","score_opus":0.04081865409755534,"score_gpt":0.37250728156352536,"score_spread":0.33168862746597,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1973721561","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94432175,0.00008689277,0.000050519073,0.011965004,0.0017720911,0.0015320851,0.00004009087,0.00011412395,0.040117443],"genre_scores_gemma":[0.99282825,0.000405777,0.000039209564,0.0010718675,0.00083274796,0.0007410409,0.000094128685,0.000040340292,0.003946632],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99696994,0.00032022127,0.000427219,0.0005615557,0.0010590698,0.0006619912],"domain_scores_gemma":[0.998116,0.00032164756,0.000076851604,0.0003592789,0.0007878844,0.0003383491],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00091860595,0.0002276423,0.00027552043,0.0016732315,0.00023898565,0.00012236855,0.00021817893,0.00025535445,0.0006695964],"category_scores_gemma":[0.00041732503,0.0001947209,0.00018541419,0.0010656958,0.0003345535,0.0003313043,0.00018103728,0.00090045005,0.0019620636],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009885854,0.000987439,0.1714057,0.00007493765,0.00018236847,0.00033641723,0.00028684712,0.0000106730295,0.7778147,0.00019888871,0.014029142,0.034574024],"study_design_scores_gemma":[0.002246596,0.000599384,0.6935909,0.0002828377,0.00001967478,0.0005417053,0.00017817877,0.004415476,0.031457167,0.001502043,0.264767,0.00039909995],"about_ca_topic_score_codex":0.0008220563,"about_ca_topic_score_gemma":0.000027424912,"teacher_disagreement_score":0.7463575,"about_ca_system_score_codex":0.00067720085,"about_ca_system_score_gemma":0.0002609239,"threshold_uncertainty_score":0.998815},"labels":[],"label_agreement":null},{"id":"W1974175819","doi":"10.1016/j.ijid.2004.07.008","title":"Demographic analysis of antimicrobial resistance among Streptococcus pneumoniae: worldwide results from PROTEKT 1999–2000","year":2005,"lang":"en","type":"article","venue":"International Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre","funders":"","keywords":"Streptococcus pneumoniae; Antimicrobial; Antibiotic resistance; Microbiology; Medicine; Biology; Antibiotics","score_opus":0.006528004858762549,"score_gpt":0.2632777248259677,"score_spread":0.25674971996720514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974175819","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99562204,0.00036099562,0.00021323242,0.0013781904,0.00049287267,0.00023163625,0.0006945784,0.000047097903,0.0009593335],"genre_scores_gemma":[0.9983133,0.00019837382,0.000060578015,0.00038266374,0.00075676525,0.00001055659,0.00007646257,0.00001964904,0.00018165527],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9976173,0.00010084107,0.0011561275,0.00024862267,0.00068212714,0.00019495125],"domain_scores_gemma":[0.9970252,0.00023782605,0.0011305514,0.00026588415,0.001091781,0.0002487427],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018407345,0.00020770484,0.0005788874,0.001667781,0.000085724816,0.000058136953,0.00025648132,0.000095116855,0.00016283011],"category_scores_gemma":[0.00051576423,0.00017607109,0.0008584425,0.000974332,0.00020129194,0.00032256884,0.000041144744,0.00031607223,0.000007729968],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005085566,0.0010862271,0.96790326,0.00001605173,0.005947451,0.0001859233,0.00017865947,0.0037104974,0.017225437,0.000028480725,0.0012547168,0.0019547374],"study_design_scores_gemma":[0.002835092,0.00014183129,0.98393655,0.00041331255,0.0025854171,0.000035291047,0.000030177645,0.0001920614,0.0028326518,0.000069270274,0.006754822,0.00017350324],"about_ca_topic_score_codex":0.00013113719,"about_ca_topic_score_gemma":0.0010544241,"teacher_disagreement_score":0.016033307,"about_ca_system_score_codex":0.0002574966,"about_ca_system_score_gemma":0.00037070215,"threshold_uncertainty_score":0.717997},"labels":[],"label_agreement":null},{"id":"W1974210311","doi":"10.1097/inf.0b013e3181bad212","title":"Reduced Physician Claims for Otitis Media After Implementation of Pneumococcal Conjugate Vaccine Program in the Province of Quebec, Canada","year":2009,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Centre hospitalier universitaire de Québec; Institut National de Santé Publique du Québec; Université Laval","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Demography; Population; Pediatrics; Otitis; Vaccination; Acute otitis media; Streptococcus pneumoniae; Surgery; Environmental health; Immunology","score_opus":0.005969441457734751,"score_gpt":0.2755305447041535,"score_spread":0.26956110324641874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974210311","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99435997,0.00016026516,0.0000321209,0.0036826308,0.00028431544,0.00134589,0.00005298436,0.000016256206,0.000065542874],"genre_scores_gemma":[0.9978712,0.00011921821,0.000007186961,0.0008600804,0.0009871303,0.000118807824,0.000010208191,0.000012083948,0.000014093277],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985692,0.00014718203,0.00054057135,0.00012432825,0.0003401387,0.0002786042],"domain_scores_gemma":[0.9988755,0.00017266026,0.0003683289,0.0002028645,0.0002298072,0.00015083243],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000319041,0.00015055569,0.0002647306,0.00015115806,0.00015396635,0.00002296397,0.00011983624,0.00003839415,0.000026303238],"category_scores_gemma":[0.0000887742,0.000087404,0.00017503783,0.00038384186,0.00003636472,0.00009420541,0.000010840722,0.00029428478,6.266298e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00091184926,0.0022108469,0.9466755,0.0004083623,0.00018495208,0.00024151399,0.001325847,0.00030072886,0.004956859,0.00019398681,0.0052605188,0.037329063],"study_design_scores_gemma":[0.0019524087,0.0006047409,0.9950206,0.000029267663,0.0005990351,0.00008403144,0.00031101343,0.000038030295,0.00018767572,0.0006205626,0.00044883945,0.000103758735],"about_ca_topic_score_codex":0.012148489,"about_ca_topic_score_gemma":0.23508707,"teacher_disagreement_score":0.22293857,"about_ca_system_score_codex":0.00017238574,"about_ca_system_score_gemma":0.0020585454,"threshold_uncertainty_score":0.9944297},"labels":[],"label_agreement":null},{"id":"W1974500659","doi":"10.1139/w08-077","title":"Oral immunization with recombinant Lactococcus lactis confers protection against respiratory pneumococcal infection","year":2008,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Fondo para la Investigación Científica y Tecnológica; Consejo Nacional de Investigaciones Científicas y Técnicas","keywords":"Lactococcus lactis; Microbiology; Antibody; Biology; Immunization; Immunity; Immunology; Virology; Immune system; Bacteria","score_opus":0.03210926555084716,"score_gpt":0.24014917945616618,"score_spread":0.208039913905319,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974500659","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99697405,0.00008950396,0.0003274674,0.0007875138,0.00080788415,0.00039574847,0.000007463175,0.000020259677,0.0005901323],"genre_scores_gemma":[0.9987736,0.000054163356,0.000031934207,0.0007909916,0.00014784928,0.000011036563,0.000014032702,0.000024321958,0.00015209186],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989064,0.00018895582,0.00040008067,0.00014804144,0.000048900853,0.00030767618],"domain_scores_gemma":[0.9986287,0.000019890309,0.0003069494,0.00015967917,0.00049225613,0.0003925322],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002278329,0.00016176047,0.00034474613,0.0006240977,0.00035794597,0.00001337355,0.00006576834,0.000238723,0.000094472445],"category_scores_gemma":[0.00011203121,0.00012560148,0.00011023676,0.00032631645,0.0003047277,0.0001419711,0.0000057270604,0.0005888398,0.000027577273],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001321477,0.000064511325,0.21883503,0.000022901759,0.00013969008,0.00057827897,0.00021749007,0.00009487228,0.7770082,0.000016263502,0.0009911719,0.0018994795],"study_design_scores_gemma":[0.003905809,0.0047559487,0.42998138,0.00024485687,0.00014730499,0.027442893,0.00010478976,0.000011255607,0.030462475,0.000012587812,0.50258785,0.00034286542],"about_ca_topic_score_codex":0.0013712163,"about_ca_topic_score_gemma":0.013649619,"teacher_disagreement_score":0.7465457,"about_ca_system_score_codex":0.00043870084,"about_ca_system_score_gemma":0.0026578482,"threshold_uncertainty_score":0.7616808},"labels":[],"label_agreement":null},{"id":"W1974738927","doi":"10.1093/jac/dkp231","title":"In vitro activity of ceftaroline, ceftobiprole and cethromycin against clinical isolates of Streptococcus pneumoniae collected from across Canada between 2003 and 2008","year":2009,"lang":"en","type":"letter","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Toronto Public Health; University of Toronto; Mount Sinai Hospital","funders":"Imperial College London","keywords":"Streptococcus pneumoniae; Microbiology; In vitro; Cephalosporin; Medicine; Biology; Antibiotics; Biochemistry","score_opus":0.01436395712568029,"score_gpt":0.2945952375209687,"score_spread":0.28023128039528844,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974738927","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.90981466,0.00022554086,0.000007122861,0.08850357,0.00030173105,0.00042705727,0.00069591,0.0000060211682,0.000018377814],"genre_scores_gemma":[0.87027127,0.0024960416,0.00030470826,0.1241722,0.0024622686,0.0000019434906,0.0000684457,0.00008659079,0.00013654264],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99712276,0.00022396925,0.0015867542,0.00035238708,0.00030680132,0.00040734033],"domain_scores_gemma":[0.9969748,0.00032478175,0.0017034722,0.0002800792,0.00054585346,0.00017098767],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00037554675,0.00041999933,0.002219037,0.0002080238,0.00007297774,0.000022716333,0.00017315173,0.0009307839,0.000018275308],"category_scores_gemma":[0.00012471229,0.00035603173,0.00025281004,0.00044181957,0.00032791682,0.00012423148,0.00003309851,0.002361637,2.0162639e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00058070046,0.00028366342,0.07837347,0.0001761242,0.00059145014,0.00028035333,0.00015281166,0.0000026819569,0.71649534,1.0325176e-8,0.19911918,0.003944223],"study_design_scores_gemma":[0.011558872,0.0015341868,0.37042707,0.0011651546,0.00037978854,0.00025643824,0.000032377193,0.000025007685,0.4323472,0.0000076092465,0.18168828,0.00057799404],"about_ca_topic_score_codex":0.01602759,"about_ca_topic_score_gemma":0.009288632,"teacher_disagreement_score":0.2920536,"about_ca_system_score_codex":0.0001432222,"about_ca_system_score_gemma":0.001535802,"threshold_uncertainty_score":0.99994},"labels":[],"label_agreement":null},{"id":"W1974794853","doi":"10.1179/joc.2006.18.4.373","title":"Relative Potential for Selection of Quinolone-Resistance- Determining-Region Mutations in<i>Streptococcus pneumoniae</i>by Gemifloxacin, Gatifloxacin and Moxifloxacin","year":2006,"lang":"en","type":"article","venue":"Journal of Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital","funders":"","keywords":"Gatifloxacin; Gemifloxacin; Moxifloxacin; DNA gyrase; Quinolone; Streptococcus pneumoniae; Microbiology; Topoisomerase IV; Levofloxacin; Sparfloxacin; Ciprofloxacin; Medicine; Pharmacology; Biology; Antibiotics; Ofloxacin; Genetics; Escherichia coli; Gene","score_opus":0.007676465040214943,"score_gpt":0.26060307167367724,"score_spread":0.2529266066334623,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974794853","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9886785,0.00033444684,0.007953725,0.0022268984,0.00012125172,0.00045646023,0.000010989344,0.000015788935,0.00020193384],"genre_scores_gemma":[0.9982706,0.0001438034,0.00067194935,0.00020211806,0.0002105581,0.000022166434,0.0000056363633,0.000028650278,0.00044453552],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985937,0.00005358023,0.0007627396,0.00017108867,0.00021336645,0.00020554621],"domain_scores_gemma":[0.9987142,0.00010645685,0.00065781357,0.00010271032,0.0003379161,0.00008087561],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019332685,0.00017433299,0.00046558236,0.00033392172,0.00008717614,0.000016441614,0.000054952397,0.00015943935,0.000011483775],"category_scores_gemma":[0.000054791974,0.00015030561,0.00018929958,0.00029304082,0.00012271029,0.00023100832,0.000005330021,0.0002619781,4.473242e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040433827,0.00038099944,0.08168755,0.00010500346,0.00011926347,0.000022734064,0.00035669105,0.00019147662,0.91204405,0.00007393234,0.0016986671,0.0029152883],"study_design_scores_gemma":[0.023999343,0.004214367,0.4739188,0.0010815585,0.00057693763,0.0010335159,0.00042262138,0.0016630313,0.46601477,0.007201262,0.019223774,0.0006500301],"about_ca_topic_score_codex":0.00000922855,"about_ca_topic_score_gemma":0.0000431966,"teacher_disagreement_score":0.44602928,"about_ca_system_score_codex":0.00011393863,"about_ca_system_score_gemma":0.00014274522,"threshold_uncertainty_score":0.6129285},"labels":[],"label_agreement":null},{"id":"W1975031531","doi":"10.1007/s11908-001-0053-0","title":"Relationship of penicillin resistance to mortality in pneumococcal pneumonia","year":2001,"lang":"en","type":"article","venue":"Current Infectious Disease Reports","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Juravinski Hospital","funders":"","keywords":"Streptococcus pneumoniae; Pneumonia; Penicillin; Pneumococcal pneumonia; Pneumococcal infections; Medicine; Community-acquired pneumonia; Intensive care medicine; Drug resistance; Antibiotic resistance; Microbiology; Antibiotics; Biology; Internal medicine","score_opus":0.040961026615233945,"score_gpt":0.342258848278189,"score_spread":0.30129782166295505,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975031531","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99266356,0.0005063864,0.00009749695,0.0004967686,0.00088676286,0.0008178427,0.000012212977,0.00013778995,0.004381163],"genre_scores_gemma":[0.9989914,0.00010842439,0.0000044737203,0.00009561206,0.00014502935,0.0001614455,0.00002207686,0.000024953955,0.0004466191],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9977258,0.000102465005,0.0008837895,0.00047468455,0.00045271727,0.00036053595],"domain_scores_gemma":[0.9980523,0.00010626083,0.0003105014,0.00070203474,0.00023396709,0.0005949096],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044576693,0.00021748412,0.00041476355,0.00040466798,0.00010516064,0.00001632119,0.00004946816,0.00009263453,0.00007948145],"category_scores_gemma":[0.0012427944,0.00020916047,0.00023540056,0.0009803234,0.0000583271,0.00011088745,0.00004439452,0.0003681002,0.0000424592],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005515516,0.00092841854,0.9937597,0.00023506198,0.000026129383,0.00097234006,0.000055418084,0.00018796002,0.0031410586,0.00014061171,0.00015873932,0.00033939345],"study_design_scores_gemma":[0.00037054697,0.000064445754,0.9649158,0.00030349995,0.00015853217,0.00018834994,0.000007354447,0.000013046991,0.0000874413,0.00083580415,0.032863285,0.0001918948],"about_ca_topic_score_codex":0.000030332503,"about_ca_topic_score_gemma":0.0002426906,"teacher_disagreement_score":0.032704547,"about_ca_system_score_codex":0.0003889778,"about_ca_system_score_gemma":0.00043004466,"threshold_uncertainty_score":0.8529316},"labels":[],"label_agreement":null},{"id":"W1975159020","doi":"10.1183/09031936.03.00023003","title":"Is<i>Chlamydia pneumoniae</i>an important pathogen in patients with community-acquired pneumonia?","year":2003,"lang":"en","type":"letter","venue":"European Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Community-acquired pneumonia; Chlamydia; Serology; Pneumonia; Chlamydophila pneumoniae; Etiology; Pathogen; Immunology; Medicine; Asymptomatic; Incidence (geometry); Intensive care medicine; Internal medicine; Chlamydiaceae; Antibody","score_opus":0.028448741485525824,"score_gpt":0.2591220361444991,"score_spread":0.23067329465897327,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975159020","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96477145,0.0003450292,0.000011238143,0.023332525,0.0011707763,0.001086298,0.00023638514,0.00019298539,0.008853318],"genre_scores_gemma":[0.041455027,0.0000864988,0.00007700923,0.9525183,0.0036331902,0.000028270215,0.00032944785,0.00075553404,0.0011167644],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9888784,0.005472859,0.0020344402,0.0008230646,0.0014613874,0.001329827],"domain_scores_gemma":[0.99506706,0.000112417554,0.0013729293,0.0019935137,0.00066446414,0.0007895876],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.002566401,0.0011679092,0.0013789983,0.0012104596,0.0010793115,0.0003384891,0.00086321327,0.00076184166,0.00035228566],"category_scores_gemma":[0.00014810919,0.00091894844,0.0004971226,0.0007206625,0.00037030174,0.00046274476,0.00015461819,0.010604836,0.00031946786],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019163155,0.0013225318,0.7686329,0.00027616526,0.00043332033,0.020148462,0.0008999472,0.000009122541,0.004388335,0.0000017285182,0.20257777,0.0011180738],"study_design_scores_gemma":[0.003643988,0.002469684,0.324306,0.0006312092,0.00027429237,0.0011354208,0.000082914754,0.0000011348495,0.000029412862,0.000011048944,0.6666169,0.0007979853],"about_ca_topic_score_codex":0.000010056285,"about_ca_topic_score_gemma":0.00002111098,"teacher_disagreement_score":0.92918575,"about_ca_system_score_codex":0.0005324582,"about_ca_system_score_gemma":0.0009006,"threshold_uncertainty_score":0.9993261},"labels":[],"label_agreement":null},{"id":"W1975292546","doi":"10.1371/journal.pone.0011989","title":"A Systematic Review on the Diagnosis of Pediatric Bacterial Pneumonia: When Gold Is Bronze","year":2010,"lang":"en","type":"review","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":143,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario; University of Calgary; University of Alberta; Children's Hospital of Western Ontario; Alberta Children's Hospital; Western University","funders":"Canadian Institutes of Health Research","keywords":"Gold standard (test); Pneumonia; Medicine; Chest radiograph; Intensive care medicine; Etiology; Pediatrics; Bacterial pneumonia; Radiography; Surgery; Radiology; Pathology; Internal medicine","score_opus":0.09189010758189911,"score_gpt":0.3021727042562892,"score_spread":0.21028259667439012,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975292546","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0003263517,0.99085444,1.1498149e-7,0.0012280364,0.00024102593,0.0064158496,0.00016698794,0.0000607531,0.0007064463],"genre_scores_gemma":[0.000013364265,0.99366623,0.000010589185,0.0012279451,0.00105339,0.0030080674,0.00003389479,0.00008587387,0.00090062036],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.99676466,0.0004362853,0.0014280406,0.00039868397,0.00068349316,0.00028882016],"domain_scores_gemma":[0.99612,0.0010139965,0.0011048518,0.0013983502,0.0001961163,0.00016669928],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005734751,0.0005085995,0.004602061,0.00024512922,0.00008110045,0.000024415383,0.0003762046,0.00046274584,0.0007235029],"category_scores_gemma":[0.0016374883,0.00026771476,0.0010258874,0.0004685553,0.000068265486,0.000037144167,0.00008186067,0.0011096685,0.00081443525],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000016589458,0.0012726231,0.000040925715,0.99330497,0.001195095,0.0000105770705,0.000028169059,7.1129835e-10,0.00003472631,0.000020881258,0.0025018144,0.001588539],"study_design_scores_gemma":[0.00013697414,0.0002987163,0.000008747294,0.7751583,0.05213202,0.000034217137,0.0000016417629,1.488814e-7,0.0000142730705,0.000005093116,0.1719679,0.00024201516],"about_ca_topic_score_codex":0.000005756896,"about_ca_topic_score_gemma":0.0000026456403,"teacher_disagreement_score":0.21814673,"about_ca_system_score_codex":0.00009233385,"about_ca_system_score_gemma":0.0003431432,"threshold_uncertainty_score":0.9999775},"labels":[],"label_agreement":null},{"id":"W1975334241","doi":"10.1155/2010/525919","title":"Genetic Detection of Quinolone Resistance in <i>Haemophilus parainfluenzae</i>: Mutations in the Quinolone Resistance‐Determining Regions of <i>gyr</i>A and <i>par</i>C","year":2010,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de Santé Publique du Québec; Vancouver General Hospital; Public Health Agency of Canada","funders":"","keywords":"Haemophilus parainfluenzae; Quinolone; Haemophilus; Microbiology; Haemophilus influenzae; Biology; Virology; Fleroxacin; Genetics; Ciprofloxacin; Bacteria; Antibiotics; Ofloxacin","score_opus":0.007128968833551853,"score_gpt":0.23627293806882552,"score_spread":0.22914396923527366,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975334241","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944294,0.0032774424,0.00003548335,0.0016255415,0.0002676248,0.00018637575,0.00004101195,0.000004081205,0.00013305321],"genre_scores_gemma":[0.9985488,0.00045724373,0.00003078667,0.0008343214,0.00009906626,0.000010401586,0.000002987384,0.000009327749,0.0000070882215],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99871135,0.00015841347,0.00062990654,0.0001548661,0.00008488965,0.00026057602],"domain_scores_gemma":[0.9987222,0.0002747723,0.00029535062,0.0001631878,0.00014473012,0.0003997785],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028903867,0.0001267569,0.00042155874,0.00048055052,0.00011340259,0.000008291941,0.00009962674,0.00021266776,0.000014950737],"category_scores_gemma":[0.00093134184,0.00009609507,0.00008522672,0.00034448286,0.0010313842,0.000047373785,0.000011679519,0.0005504103,3.2531327e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015175148,0.00025559368,0.7214241,0.00031696976,0.00010872254,0.00091834675,0.001963459,0.000008065097,0.27024478,0.00045020657,0.00025309506,0.0039049312],"study_design_scores_gemma":[0.0026844393,0.0006027717,0.9801114,0.00055497437,0.00017488777,0.0039660134,0.00032733253,0.000003968635,0.00057769095,0.001027487,0.009842724,0.00012630301],"about_ca_topic_score_codex":0.0009532143,"about_ca_topic_score_gemma":0.16181155,"teacher_disagreement_score":0.2696671,"about_ca_system_score_codex":0.000044395816,"about_ca_system_score_gemma":0.0009711904,"threshold_uncertainty_score":0.8534832},"labels":[],"label_agreement":null},{"id":"W1975362261","doi":"10.1016/j.ijantimicag.2006.02.022","title":"Disease, temporal and sociodemographic influences on initial treatment of community-acquired pneumonia in Manitoba, Canada","year":2006,"lang":"en","type":"article","venue":"International Journal of Antimicrobial Agents","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; University of Alberta","funders":"","keywords":"Medicine; Odds ratio; Residence; Community-acquired pneumonia; Pneumonia; Emergency department; Reimbursement; Antibiotics; Receipt; Logistic regression; Odds; Demography; Retrospective cohort study; Disease; Emergency medicine; Pediatrics; Health care; Internal medicine; Psychiatry","score_opus":0.02993375895942503,"score_gpt":0.2967781670927565,"score_spread":0.2668444081333315,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975362261","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99689716,0.000031650878,0.0000025098257,0.0022700264,0.0005136101,0.000091212714,0.00006783278,0.0000034181762,0.00012257286],"genre_scores_gemma":[0.99889827,0.000081889506,0.000013973736,0.00075807964,0.00019783677,0.0000012230996,0.00002084896,0.0000072626494,0.000020621954],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990206,0.000085900596,0.00044511873,0.000059877875,0.00028630908,0.00010220269],"domain_scores_gemma":[0.99934673,0.000049895752,0.0002609152,0.00006851927,0.00019474037,0.00007921278],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000078585224,0.000109015804,0.00022831805,0.00028884044,0.00006399878,0.000017439404,0.00010987298,0.000037971073,0.00001212705],"category_scores_gemma":[0.000019605759,0.00008716526,0.00009917577,0.000089184745,0.000106142266,0.00008177107,0.000018711069,0.000118248674,6.7184186e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037778495,0.0010785894,0.965324,0.000018811836,0.00017438384,0.0005701065,0.00011519661,0.00020393085,0.030568166,0.000019089233,0.000663576,0.00088635425],"study_design_scores_gemma":[0.0020599575,0.00037938668,0.99220926,0.00021154898,0.000053132197,0.00017180038,0.00008541044,0.000012118114,0.0022518584,0.000059323807,0.0024374474,0.000068779285],"about_ca_topic_score_codex":0.09630709,"about_ca_topic_score_gemma":0.106913246,"teacher_disagreement_score":0.028316308,"about_ca_system_score_codex":0.00020829923,"about_ca_system_score_gemma":0.00035765689,"threshold_uncertainty_score":0.9097107},"labels":[],"label_agreement":null},{"id":"W1975417636","doi":"10.1016/j.pedhc.2003.08.007","title":"Acute sinusitis in children","year":2004,"lang":"en","type":"review","venue":"Journal of Pediatric Health Care","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Children's Hospital; University of Calgary","funders":"","keywords":"Medicine; Moraxella catarrhalis; Sinusitis; Streptococcus pneumoniae; Haemophilus influenzae; Amoxicillin; Sinus (botany); Intensive care medicine; Dermatology; Pediatrics; Antibiotics; Surgery; Microbiology","score_opus":0.02308138626902727,"score_gpt":0.3897856958840095,"score_spread":0.36670430961498224,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975417636","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00043607407,0.9976082,0.0000045407323,0.0003678973,0.0007336012,0.0006511942,0.00008093634,0.000013456106,0.000104110644],"genre_scores_gemma":[0.000099965815,0.99522233,0.00007527887,0.0005009689,0.003987873,0.000007963322,0.000034019424,0.000044526605,0.000027103666],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9973605,0.00016465796,0.001529641,0.00018000929,0.00040120637,0.0003639615],"domain_scores_gemma":[0.99771935,0.000052103187,0.0013297043,0.00020883296,0.00021481798,0.00047516605],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031669615,0.0002850099,0.0021647066,0.0012402817,0.00007940716,0.00001402718,0.00014301931,0.0003586588,0.00002752068],"category_scores_gemma":[0.00007342432,0.00020450202,0.00079749594,0.0008941244,0.000018284125,0.000061152554,0.000027352276,0.001534984,0.000036309582],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010870809,0.00023970757,0.008683501,0.04669607,0.00043461987,0.0014340975,0.000482778,0.0000031376735,5.3794e-8,0.000007082851,0.003735417,0.93827266],"study_design_scores_gemma":[0.0015378353,0.0012120954,0.0041540856,0.010866719,0.003135063,0.013608009,0.00004359478,1.9752102e-8,2.4268854e-8,0.00000431149,0.9651999,0.00023833824],"about_ca_topic_score_codex":0.00002793009,"about_ca_topic_score_gemma":0.0000071131044,"teacher_disagreement_score":0.96146446,"about_ca_system_score_codex":0.0017599028,"about_ca_system_score_gemma":0.011777297,"threshold_uncertainty_score":0.993825},"labels":[],"label_agreement":null},{"id":"W1975569796","doi":"10.1007/s10156-012-0514-4","title":"Clinical and bacteriological efficacies of sitafloxacin against community-acquired pneumonia caused by Streptococcus pneumoniae: nested cohort within a multicenter clinical trial","year":2012,"lang":"en","type":"article","venue":"Journal of Infection and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Daiichi Sankyo Company; Shionogi; Daiichi-Sankyo; St. Francis Xavier University; Cell Science Research Foundation","keywords":"Streptococcus pneumoniae; Sputum; Community-acquired pneumonia; Medicine; Internal medicine; Moxifloxacin; Pneumonia; Levofloxacin; Gastroenterology; Sputum culture; Microbiology; Antibiotics; Tuberculosis; Biology; Pathology","score_opus":0.05310314473157636,"score_gpt":0.37494508458365583,"score_spread":0.3218419398520795,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975569796","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977623,0.0000872423,0.000077198805,0.00059883256,0.0007958845,0.0005718045,0.0000067762558,0.000032916418,0.00006702532],"genre_scores_gemma":[0.9962967,0.0016314232,0.000040319315,0.0014561426,0.0004955986,0.000009165836,0.000005599666,0.000022382037,0.000042680676],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9967795,0.0009583638,0.0016589941,0.00015507037,0.00021868046,0.00022941398],"domain_scores_gemma":[0.99769545,0.00051204424,0.00093988806,0.0001984022,0.00024335654,0.00041085796],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024821209,0.00023138012,0.000976828,0.00014168257,0.00017596142,0.000024396497,0.000059980077,0.00037986503,0.00002851877],"category_scores_gemma":[0.00047520568,0.00016043316,0.0003485137,0.00015519743,0.0005372579,0.00018634554,0.000031990705,0.00086159055,0.0000019311133],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032397015,0.0023168314,0.8827382,0.000040910792,0.00041597863,0.0000036781505,0.00034975295,9.830098e-7,0.10618353,0.0000029600596,0.00017032503,0.0045371903],"study_design_scores_gemma":[0.035555482,0.0042590364,0.95221364,0.00011837773,0.00020544238,0.000092421375,0.00015731301,0.000052460724,0.0014162591,0.00000428452,0.005776792,0.00014848786],"about_ca_topic_score_codex":0.000009401344,"about_ca_topic_score_gemma":0.0000058044343,"teacher_disagreement_score":0.10476727,"about_ca_system_score_codex":0.000033124637,"about_ca_system_score_gemma":0.00006992983,"threshold_uncertainty_score":0.65422744},"labels":[],"label_agreement":null},{"id":"W1976013362","doi":"10.1016/j.arcped.2004.05.003","title":"Antibiothérapie des infections respiratoires basses de l'enfant","year":2004,"lang":"fr","type":"review","venue":"Archives de Pédiatrie","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Bronchiolitis; Streptococcus pneumoniae; Pneumonia; Medicine; Respiratory distress; Antibiotics; Respiratory tract; Immunology; Intensive care medicine; Respiratory system; Virus; Internal medicine; Microbiology; Biology; Surgery","score_opus":0.02725031629750227,"score_gpt":0.3296343061295478,"score_spread":0.3023839898320455,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976013362","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0112856375,0.9649269,0.0027273744,0.00059020246,0.0014416195,0.0012951386,0.00032151054,0.000367809,0.017043795],"genre_scores_gemma":[0.0078016864,0.9845883,0.0014040907,0.0007911458,0.0029658438,0.00016298484,0.00008083418,0.00021720734,0.0019878661],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99444944,0.0011079359,0.0012552345,0.00093787967,0.0003439345,0.0019055568],"domain_scores_gemma":[0.99513763,0.0020503092,0.00051835435,0.0010207931,0.00008350492,0.0011894156],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005772519,0.0010526858,0.0018861397,0.0010750584,0.0013636027,0.00017367308,0.00047135958,0.00072158297,0.0006382444],"category_scores_gemma":[0.0013412384,0.0009434726,0.0016923007,0.0012505745,0.0017273313,0.00016481597,0.00024096834,0.0018672947,0.00092830556],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048143327,0.0025826585,0.1115575,0.049486987,0.0023334855,0.0014149206,0.0016575527,0.00062121585,0.003907411,0.008699982,0.0006452672,0.81704485],"study_design_scores_gemma":[0.0010368432,0.0010544303,0.018706009,0.023211377,0.003994831,0.0020508382,0.00008278375,0.00004318887,0.00016731577,0.0030414585,0.94572264,0.00088828156],"about_ca_topic_score_codex":0.00039186646,"about_ca_topic_score_gemma":0.00017755796,"teacher_disagreement_score":0.94507736,"about_ca_system_score_codex":0.0010558809,"about_ca_system_score_gemma":0.008418692,"threshold_uncertainty_score":0.99993646},"labels":[],"label_agreement":null},{"id":"W1976271746","doi":"10.1097/01.inf.0000261198.90649.04","title":"SERUM ANTIBODIES TO THE PNEUMOCOCCAL SURFACE PROTEINS PhtB AND PhtE IN FINNISH INFANTS AND ADULTS","year":2007,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Antibody; Otitis; Acute otitis media; Immunology; Streptococcus pneumoniae; Biology; Pneumococcal disease; Microbiology; Medicine; Genetics","score_opus":0.0065324031219586055,"score_gpt":0.258729179870887,"score_spread":0.2521967767489284,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976271746","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9930686,0.0010156477,0.000079896134,0.0041897413,0.00034544044,0.0008459918,0.000017861175,0.00004699544,0.00038983408],"genre_scores_gemma":[0.99641025,0.0013584436,0.000013356485,0.00094345707,0.0011554515,0.000012495166,6.8374413e-7,0.000021480797,0.0000843891],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99853593,0.00013067559,0.0003753557,0.00021538942,0.00028988832,0.00045277306],"domain_scores_gemma":[0.998774,0.00021695887,0.00013332338,0.00022547941,0.00012486104,0.00052536454],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009981301,0.00020677983,0.00023294547,0.00024295322,0.0007010093,0.00010261618,0.00009395553,0.00007361702,0.000020736894],"category_scores_gemma":[0.00043190084,0.00011515232,0.00008441174,0.0005473118,0.00011230868,0.00012975693,0.00009893814,0.0007013964,0.00001717271],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023628616,0.0001613059,0.99579126,0.000058761987,0.000032133503,0.00016745577,0.0007633962,0.00011466112,0.0005879114,0.000011869525,0.0002094896,0.0018654715],"study_design_scores_gemma":[0.0014113076,0.0002881217,0.99466413,0.000057843263,0.00020535087,0.001584964,0.00019633149,0.000089331304,0.000022547873,0.00014117602,0.0011863165,0.00015259175],"about_ca_topic_score_codex":0.000055605884,"about_ca_topic_score_gemma":0.00022242712,"teacher_disagreement_score":0.0033416506,"about_ca_system_score_codex":0.00006847541,"about_ca_system_score_gemma":0.00019718801,"threshold_uncertainty_score":0.53916675},"labels":[],"label_agreement":null},{"id":"W1977198231","doi":"10.1016/j.vaccine.2013.05.005","title":"Impact of pneumococcal conjugate vaccines on nasopharyngeal carriage and invasive disease among unvaccinated people: Review of evidence on indirect effects","year":2013,"lang":"en","type":"review","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":200,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; Wellcome Trust; Bill and Melinda Gates Foundation; Pfizer; GAVI Alliance; PATH; Foundation for the National Institutes of Health","keywords":"Carriage; Medicine; Pneumococcal disease; Vaccination; Streptococcus pneumoniae; Virology; Pneumococcal infections; Pneumococcal conjugate vaccine; Immunology; Microbiology; Biology; Antibiotics","score_opus":0.05888180078542324,"score_gpt":0.3705944364321356,"score_spread":0.31171263564671237,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977198231","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.13515747,0.8591587,2.8903102e-7,0.00012595729,0.000246513,0.005018906,0.00013634213,0.000068907284,0.00008694783],"genre_scores_gemma":[0.046402324,0.9523874,0.0000020307907,0.0001718599,0.00020496098,0.00044694782,0.00014946729,0.000109232846,0.00012579128],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.9961848,0.0006780538,0.0014286912,0.00079704396,0.00045325226,0.00045813125],"domain_scores_gemma":[0.99408937,0.0023206598,0.0013440013,0.0011042237,0.00044093782,0.00070082565],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00043947969,0.0009795411,0.0050606253,0.00077568926,0.00009318777,0.00001867532,0.00028077548,0.00036264415,0.00031664976],"category_scores_gemma":[0.003598284,0.0005555766,0.0012687808,0.0011784789,0.000033221862,0.0001776295,0.00014236932,0.000809521,0.000059253],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036414608,0.000900988,0.060692262,0.77069926,0.0022271632,0.00035639634,0.000054403623,0.0000022638988,0.0012236183,0.000016507935,0.0025351786,0.1609278],"study_design_scores_gemma":[0.0016994264,0.004775006,0.3630181,0.6143364,0.006926315,0.00012209227,0.0000022043932,0.0000032954167,0.00020401801,0.000006262331,0.008314664,0.00059222383],"about_ca_topic_score_codex":0.0001190092,"about_ca_topic_score_gemma":0.000018821307,"teacher_disagreement_score":0.30232584,"about_ca_system_score_codex":0.00022701499,"about_ca_system_score_gemma":0.0009586081,"threshold_uncertainty_score":0.9996896},"labels":[],"label_agreement":null},{"id":"W1977329714","doi":"10.1592/phco.21.10.89s.34535","title":"A Controlled Trial of a Critical Pathway for Treating Community‐Acquired Pneumonia: The CAPITAL Study","year":2001,"lang":"en","type":"article","venue":"Pharmacotherapy The Journal of Human Pharmacology and Drug Therapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Western University","funders":"","keywords":"Medicine; Community-acquired pneumonia; Pneumonia; Clinical pathway; Clinical trial; Randomized controlled trial; Intensive care medicine; Emergency medicine; Quality of life (healthcare); Physical therapy; Internal medicine; Nursing","score_opus":0.042957694056414066,"score_gpt":0.39582389165494997,"score_spread":0.3528661975985359,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977329714","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98659575,0.0022129016,0.00005137271,0.0068819583,0.00077776023,0.0033284107,0.000006312302,0.000020973004,0.0001245347],"genre_scores_gemma":[0.9932272,0.0018666883,0.0000063727575,0.003531301,0.0009997874,0.00019792943,6.665517e-7,0.000034707627,0.00013539071],"study_design_codex":"bench_or_experimental","study_design_gemma":"randomized_trial","domain_scores_codex":[0.99597085,0.002428617,0.0009126288,0.00011662519,0.00027044184,0.0003008502],"domain_scores_gemma":[0.9955748,0.0031395159,0.00056691014,0.00020850103,0.00037358757,0.00013672156],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0036326363,0.00026823106,0.00085513137,0.00018155186,0.001200886,0.000022826152,0.00033023636,0.00006785182,0.0002058493],"category_scores_gemma":[0.00006610945,0.0001285584,0.00040583263,0.00016786323,0.00062001083,0.00012337061,0.000025122461,0.00068138994,6.599895e-7],"study_design_candidate":"randomized_trial","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.18171293,0.006419465,0.0022045819,0.000022353763,0.0016100509,0.000031101754,0.0158796,0.000012390453,0.7894108,0.000037866153,0.0004554334,0.0022033986],"study_design_scores_gemma":[0.8958841,0.02815595,0.0024814378,0.00005002437,0.0024205272,0.0010699136,0.010287188,0.00018827821,0.051762328,0.0009992042,0.006401762,0.0002993094],"about_ca_topic_score_codex":0.00002441759,"about_ca_topic_score_gemma":0.000012448628,"teacher_disagreement_score":0.7376485,"about_ca_system_score_codex":0.000034693738,"about_ca_system_score_gemma":0.00014008739,"threshold_uncertainty_score":0.92363656},"labels":[],"label_agreement":null},{"id":"W1977517171","doi":"10.1186/1471-2334-12-101","title":"Cost-effectiveness of 2 + 1 dosing of 13-valent and 10-valent pneumococcal conjugate vaccines in Canada","year":2012,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Pfizer (Canada); TransCanada (Canada)","funders":"Pfizer Canada; Pfizer","keywords":"Pneumococcal conjugate vaccine; Medicine; Pneumococcal disease; Vaccination; Streptococcus pneumoniae; Population; Immunization; Pneumococcal infections; Environmental health; Incidence (geometry); Immunology; Antibiotics; Biology; Microbiology; Antigen","score_opus":0.029414691239140096,"score_gpt":0.2946998747782,"score_spread":0.2652851835390599,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977517171","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997201,0.00096117245,0.000032197055,0.000015358546,0.00033794562,0.0007952992,0.000068787595,0.000030155168,0.0005580698],"genre_scores_gemma":[0.9996323,0.00008454905,0.0000028589523,0.000043412514,0.00008324359,0.00010688769,0.000011766732,0.000019707186,0.000015297777],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987299,0.00021021195,0.0003764543,0.00018411044,0.00019735927,0.0003019799],"domain_scores_gemma":[0.99885184,0.00039123013,0.0001510175,0.00020633936,0.00013209751,0.0002674529],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018733117,0.0001835579,0.00048367112,0.00018452897,0.00006155123,0.000005275128,0.00003825148,0.00005707804,0.000060892533],"category_scores_gemma":[0.00024318392,0.00015706338,0.00010345111,0.00024511098,0.00008334514,0.00011296449,0.00004504059,0.00010499685,0.0000026119167],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016626308,0.0005577817,0.98169106,0.0013139521,0.0000631875,0.0000072906178,0.00005600973,0.00025092973,0.015352977,0.00004127511,0.000035495294,0.0004637711],"study_design_scores_gemma":[0.0022862072,0.00020608715,0.98886025,0.0003799859,0.0002275574,0.00005619053,0.0000948529,0.000055871496,0.0073245117,0.000021290178,0.00034098176,0.00014621059],"about_ca_topic_score_codex":0.0857913,"about_ca_topic_score_gemma":0.13739018,"teacher_disagreement_score":0.05159888,"about_ca_system_score_codex":0.0003235216,"about_ca_system_score_gemma":0.0008240862,"threshold_uncertainty_score":0.9202965},"labels":[],"label_agreement":null},{"id":"W1977554874","doi":"10.1016/j.rmed.2004.05.010","title":"Etiology of community-acquired pneumonia treated in an ambulatory setting","year":2004,"lang":"en","type":"article","venue":"Respiratory Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":71,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Bayer (Canada); University of Alberta","funders":"","keywords":"Medicine; Mycoplasma pneumoniae; Streptococcus pneumoniae; Etiology; Pneumonia; Sputum; Community-acquired pneumonia; Haemophilus influenzae; Chlamydia; Serology; Chest radiograph; Sputum culture; Internal medicine; Ambulatory; Blood culture; Immunology; Tuberculosis; Pathology; Antibody; Microbiology; Lung; Antibiotics","score_opus":0.055701686386166085,"score_gpt":0.3514896184620499,"score_spread":0.29578793207588383,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977554874","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954349,0.00035462406,0.00003367881,0.0015585542,0.00018898404,0.0004196407,0.000006269935,0.00014447386,0.0018588903],"genre_scores_gemma":[0.9953549,0.0000209306,0.000031344836,0.004210624,0.0002473053,0.000034564437,0.000027647482,0.00004294429,0.000029745153],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9975863,0.00060419284,0.0008511599,0.00025339695,0.0003032179,0.00040172486],"domain_scores_gemma":[0.99830306,0.00016428836,0.00023949517,0.0007861873,0.00020272794,0.0003042253],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011222396,0.00027550542,0.0007858481,0.00068539585,0.0001871221,0.000003709295,0.00018649684,0.00028629616,0.00010409646],"category_scores_gemma":[0.00039916567,0.00022325733,0.00009225494,0.0007154169,0.00068878545,0.00013504748,0.000048912134,0.000622317,0.000021315649],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000115947114,0.0005429274,0.18882869,0.00014880531,0.000043472595,0.00013193503,0.0017767352,0.00016689839,0.80590075,0.0003177197,0.000056608395,0.0019695326],"study_design_scores_gemma":[0.007875366,0.004954888,0.9628192,0.0007041344,0.00013323431,0.00014964202,0.0016580699,0.00001875744,0.013756153,0.0002507703,0.0074242186,0.0002555328],"about_ca_topic_score_codex":0.00036562962,"about_ca_topic_score_gemma":0.00037690057,"teacher_disagreement_score":0.7921446,"about_ca_system_score_codex":0.0002342154,"about_ca_system_score_gemma":0.0002534626,"threshold_uncertainty_score":0.91041696},"labels":[],"label_agreement":null},{"id":"W1977620452","doi":"10.1097/inf.0b013e3181658c5c","title":"Effects of Routine Infant Vaccination With the 7-Valent Pneumococcal Conjugate Vaccine on Nasopharyngeal Colonization With Streptococcus pneumoniae in Children in Calgary, Canada","year":2008,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Calgary Laboratory Services; Alberta Children's Hospital; University of Alberta; University of Calgary","funders":"","keywords":"Streptococcus pneumoniae; Vaccination; Medicine; Pneumococcal conjugate vaccine; Colonization; Serotype; Pneumococcal infections; Pediatrics; Immunology; Antibiotics; Microbiology; Biology","score_opus":0.0031420557906257436,"score_gpt":0.20099057785995192,"score_spread":0.19784852206932618,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977620452","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959531,0.00021974127,0.000035924946,0.0017603764,0.00014116036,0.001740201,0.000010432789,0.000028833607,0.00011025011],"genre_scores_gemma":[0.998415,0.00045639553,0.0000012269338,0.00052237796,0.0004108971,0.00011834542,0.00000986181,0.000034124096,0.00003180012],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9979388,0.00032506383,0.00049929414,0.0002456926,0.0005986706,0.00039247025],"domain_scores_gemma":[0.9985167,0.0003112572,0.00040954706,0.0002652577,0.00023105562,0.00026622292],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030965803,0.00029070833,0.00039738606,0.00038001288,0.000411779,0.000021033664,0.00014687292,0.00006839518,0.00002076256],"category_scores_gemma":[0.00016028841,0.0001488673,0.00008210694,0.0010494302,0.000053063515,0.00011297986,0.000032605854,0.00086974516,0.000002501417],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005738124,0.00064084993,0.9896385,0.00007087483,0.00009203385,0.00048677775,0.00019221778,0.0077928873,0.00021884502,0.000014799603,0.00015867899,0.00011972601],"study_design_scores_gemma":[0.006262778,0.0012843303,0.9898703,0.00007461283,0.00041352288,0.0013622852,0.000018164234,0.00036485255,0.00013197088,0.000011794538,0.000026587766,0.00017880292],"about_ca_topic_score_codex":0.009710538,"about_ca_topic_score_gemma":0.03858678,"teacher_disagreement_score":0.028876241,"about_ca_system_score_codex":0.0005145461,"about_ca_system_score_gemma":0.0018468489,"threshold_uncertainty_score":0.99688387},"labels":[],"label_agreement":null},{"id":"W1978280070","doi":"10.1016/s0732-8893(02)00540-0","title":"Pathogen of occurrence and susceptibility patterns associated with pneumonia in hospitalized patients in North America: results of the SENTRY Antimicrobial Surveillance Study (2000)","year":2003,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":136,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre","funders":"","keywords":"Linezolid; Medicine; Microbiology; Streptococcus pneumoniae; Piperacillin; Cefepime; Tazobactam; Quinupristin; Pneumonia; Imipenem; Antimicrobial; Vancomycin; Teicoplanin; Empiric therapy; Meropenem; Penicillin; Staphylococcus aureus; Antibiotics; Internal medicine; Antibiotic resistance; Pseudomonas aeruginosa; Biology","score_opus":0.004675727815824617,"score_gpt":0.2153807510262374,"score_spread":0.2107050232104128,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1978280070","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972059,0.000054192336,0.000001440238,0.00003377991,0.00010424071,0.00095708424,0.0016185965,0.00001054303,0.000014196192],"genre_scores_gemma":[0.9995986,0.00011659653,5.401638e-7,0.000112112066,0.0000036813126,0.000023380075,0.0001368413,0.0000063154994,0.0000019387485],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99846256,0.00052578864,0.00041779713,0.00033111437,0.000050554263,0.0002121693],"domain_scores_gemma":[0.99884766,0.00048057406,0.00023145237,0.00023602626,0.00011993615,0.000084331],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019465969,0.00016639978,0.00040819056,0.000102986916,0.000059533035,0.0000041391854,0.000046075435,0.000073359064,0.000005278376],"category_scores_gemma":[0.0027485453,0.00011484193,0.000042960426,0.00039751639,0.00035257675,0.000033648867,0.00004050006,0.00018622846,3.9489686e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017450383,0.0029135705,0.9939199,0.000068019726,0.000046889614,0.000024442157,0.00048048666,0.000029786472,0.0022566016,6.619334e-7,0.000012563232,0.00007255521],"study_design_scores_gemma":[0.0054039587,0.0007768662,0.9933259,0.000131337,0.000068015856,0.0000072193097,0.00006421547,0.0000024076617,0.00008020684,0.0000025817365,0.000020053241,0.00011726877],"about_ca_topic_score_codex":0.0002500132,"about_ca_topic_score_gemma":0.0049200966,"teacher_disagreement_score":0.005229455,"about_ca_system_score_codex":0.000049279406,"about_ca_system_score_gemma":0.00016218603,"threshold_uncertainty_score":0.46831182},"labels":[],"label_agreement":null},{"id":"W1978352791","doi":"10.1002/ebch.393","title":"The Cochrane Library and Treatment for Community Acquired Pneumonia in Children: An Overview of Reviews","year":2009,"lang":"en","type":"article","venue":"Evidence-Based Child Health A Cochrane Review Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Amoxicillin; Azithromycin; Medicine; Pneumonia; Community-acquired pneumonia; Cochrane Library; Clarithromycin; Internal medicine; Erythromycin; Antibiotics; Intensive care medicine; Pediatrics; Randomized controlled trial; Helicobacter pylori","score_opus":0.12144259367296964,"score_gpt":0.42467123669842466,"score_spread":0.30322864302545505,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1978352791","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.029917886,0.8542042,0.000021706084,0.11243925,0.000085777836,0.003246128,0.00001649357,0.000029345412,0.000039248196],"genre_scores_gemma":[0.047675014,0.9168757,0.00021228747,0.034783676,0.0002808061,0.00010311417,0.000025876046,0.000024314506,0.000019203047],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9948102,0.0022628547,0.0017904394,0.0002627708,0.00034644353,0.0005272519],"domain_scores_gemma":[0.99672,0.000749884,0.0009944501,0.0008149833,0.00010843634,0.00061222474],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0037967106,0.00036446165,0.0017326389,0.00019453232,0.0011922665,0.00005377686,0.0002890614,0.00009585175,0.000039922124],"category_scores_gemma":[0.00066757854,0.0002130178,0.00049079605,0.00055951043,0.00015377499,0.0005494676,0.000020349195,0.00067037734,0.0000030477381],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008237019,0.0027250156,0.04387292,0.028221548,0.00016688327,0.000026861571,0.00045689876,0.00001678755,0.0008845326,0.0005832203,0.0023843802,0.91983724],"study_design_scores_gemma":[0.00567971,0.015699016,0.49020603,0.36621284,0.0005686331,0.0027622853,0.000037991053,0.00008025633,0.00013066128,0.00020845121,0.11799175,0.00042237656],"about_ca_topic_score_codex":0.000025003272,"about_ca_topic_score_gemma":0.000031499825,"teacher_disagreement_score":0.9194149,"about_ca_system_score_codex":0.00015531827,"about_ca_system_score_gemma":0.000988446,"threshold_uncertainty_score":0.91700697},"labels":[],"label_agreement":null},{"id":"W1979105984","doi":"10.1111/j.1600-6143.2007.01668.x","title":"Immunogenicity of Pneumococcal Vaccine in Renal Transplant Recipients—Three Year Follow‐up of a Randomized Trial","year":2007,"lang":"en","type":"article","venue":"American Journal of Transplantation","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":112,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Medicine; Immunogenicity; Renal transplant; Randomized controlled trial; Pneumococcal vaccine; Internal medicine; Intensive care medicine; Immunology; Streptococcus pneumoniae; Transplantation; Immune system","score_opus":0.011608318275682785,"score_gpt":0.28137543107459334,"score_spread":0.2697671127989106,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979105984","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9887065,0.000055588614,0.010110591,0.00015177706,0.00034806,0.00047031746,0.00002185802,0.0000058725495,0.00012941804],"genre_scores_gemma":[0.99897486,0.00044760935,0.00040810773,0.000030100413,0.00010335147,0.0000045945894,0.000011289966,0.000012822385,0.000007262471],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.99759704,0.00019049535,0.0015229778,0.00010994819,0.00039505694,0.00018448668],"domain_scores_gemma":[0.9982131,0.00041091393,0.0009363402,0.000116566654,0.00021722296,0.0001058214],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017537378,0.00013493189,0.0011263823,0.0005513164,0.000024026436,0.000002943545,0.0000943403,0.00006514199,0.00003100851],"category_scores_gemma":[0.00008641005,0.000102607315,0.0005281702,0.00047398274,0.00016927396,0.000094482275,0.0000023493883,0.00029201884,9.495251e-7],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.7077675,0.00033803715,0.032777123,0.000044410444,0.00031758685,0.00010268163,0.0013467199,0.000051999807,0.25451466,0.000031666426,0.0000015948928,0.0027059908],"study_design_scores_gemma":[0.7434075,0.004030455,0.21492654,0.0006484103,0.0010922707,0.00065670477,0.00020470713,0.000024647561,0.034819506,0.000052079355,0.0000190591,0.000118121556],"about_ca_topic_score_codex":0.00015985257,"about_ca_topic_score_gemma":0.00016564148,"teacher_disagreement_score":0.21969517,"about_ca_system_score_codex":0.0000499282,"about_ca_system_score_gemma":0.0001588061,"threshold_uncertainty_score":0.41842046},"labels":[],"label_agreement":null},{"id":"W1979281133","doi":"10.1590/s1806-37132004000300008","title":"Pneumonias adquiridas na comunidade em pacientes idosos: aderência ao Consenso Brasileiro sobre Pneumonias","year":2004,"lang":"pt","type":"article","venue":"Jornal Brasileiro de Pneumologia","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Adidas (Canada)","funders":"","keywords":"Medicine; Pneumonia; Internal medicine; Gastroenterology; Gynecology; Surgery","score_opus":0.03032797399386949,"score_gpt":0.2984770428849626,"score_spread":0.2681490688910931,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979281133","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9750811,0.0022629823,0.0009520811,0.008920115,0.0047210674,0.0024335354,0.0007050138,0.001357594,0.0035665163],"genre_scores_gemma":[0.9804905,0.0007426283,0.00027105157,0.01038562,0.00202361,0.00025262183,0.00017804952,0.0004964728,0.005159411],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9855635,0.0013840721,0.003293452,0.0029167258,0.002265848,0.004576394],"domain_scores_gemma":[0.99002385,0.0013431906,0.0017662365,0.0029124618,0.00094311504,0.0030111428],"candidate_categories":["metaepi_narrow","sts","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow","research_integrity"],"category_scores_codex":[0.0018306298,0.0027768877,0.0032949673,0.0017033529,0.0024135415,0.00078502856,0.0018602188,0.0026597495,0.00090828276],"category_scores_gemma":[0.0026690697,0.0026357549,0.002038771,0.0027624462,0.0022760353,0.0008290144,0.0008472525,0.005433141,0.0045969742],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005703571,0.0035973904,0.6138817,0.00088450295,0.0014526088,0.008752871,0.004597192,0.0012054594,0.35708717,0.0014689293,0.0047551356,0.0017466837],"study_design_scores_gemma":[0.009859998,0.0051957914,0.9164931,0.002926187,0.0022187172,0.02118964,0.008820684,0.0008386531,0.020502392,0.00086765166,0.007297592,0.0037895918],"about_ca_topic_score_codex":0.00041353292,"about_ca_topic_score_gemma":0.00037389554,"teacher_disagreement_score":0.33658475,"about_ca_system_score_codex":0.002572072,"about_ca_system_score_gemma":0.0038681126,"threshold_uncertainty_score":0.99888515},"labels":[],"label_agreement":null},{"id":"W1979290989","doi":"10.1016/j.micpath.2008.10.006","title":"The growth phase-dependent regulation of the pilus locus genes by two-component system TCS08 in Streptococcus pneumoniae","year":2008,"lang":"en","type":"article","venue":"Microbial Pathogenesis","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Saskatchewan","funders":"Genome Prairie; Genome British Columbia; Saskatchewan Health Research Foundation; University of Saskatchewan; Genome Canada","keywords":"Biology; Virulence; Pilus; Streptococcus pneumoniae; Microbiology; Mutant; Gene; Phenotype; Locus (genetics); Genetics","score_opus":0.010778847305705826,"score_gpt":0.23613140729429696,"score_spread":0.22535255998859113,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979290989","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99662757,0.00074766163,0.00008780762,0.00065350975,0.00055525964,0.0009588326,0.00010803422,0.00006446989,0.00019687948],"genre_scores_gemma":[0.9992426,0.00012630667,0.000008771638,0.000087872315,0.00016751712,0.000077777666,0.000012844542,0.000034987977,0.00024133232],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981567,0.0002693626,0.0006099064,0.00032067535,0.0003164915,0.00032685907],"domain_scores_gemma":[0.998889,0.000076816745,0.00025176734,0.00053994934,0.00015385721,0.00008859699],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029174404,0.000229554,0.00035753992,0.000110186964,0.0005143869,0.000016340391,0.00022204382,0.000119012024,0.000009192635],"category_scores_gemma":[0.00003345108,0.00013947797,0.00023228135,0.00040558804,0.00021220351,0.000049442282,0.00007987055,0.00016912156,0.000021539845],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005798467,0.00031806063,0.035636764,0.000066636436,0.000045179902,0.000028705534,0.00014795922,0.00012806634,0.9614688,0.000041064042,0.0003407398,0.00172001],"study_design_scores_gemma":[0.0045763613,0.00024882975,0.13886052,0.00023119335,0.000181986,0.00043076434,0.0002141243,0.00021255392,0.84768474,0.000009909285,0.007050625,0.00029837832],"about_ca_topic_score_codex":0.00022615516,"about_ca_topic_score_gemma":0.00016626142,"teacher_disagreement_score":0.11378408,"about_ca_system_score_codex":0.00024764964,"about_ca_system_score_gemma":0.00014981165,"threshold_uncertainty_score":0.56877464},"labels":[],"label_agreement":null},{"id":"W1979321113","doi":"10.1016/j.vaccine.2010.06.080","title":"Residual economic burden of Streptococcus pneumoniae- and nontypeable Haemophilus influenzae- associated disease following vaccination with PCV-7: A multicountry analysis","year":2010,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Wayne State University; GlaxoSmithKline","keywords":"Medicine; Streptococcus pneumoniae; Per capita; Vaccination; Haemophilus influenzae; Environmental health; Pneumococcal infections; Immunology; Biology; Population; Microbiology","score_opus":0.007068620218461498,"score_gpt":0.25881748285886685,"score_spread":0.25174886264040536,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979321113","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99815273,0.00007178028,0.000021581998,0.00082351884,0.00012357284,0.0004476279,0.00004769255,0.00007924208,0.00023227403],"genre_scores_gemma":[0.9993339,0.000014250286,0.000041297284,0.00009710118,0.00014111194,0.00003674437,0.000058508864,0.000027367903,0.00024971034],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99882954,0.000037951166,0.00037416007,0.00033322524,0.00018408684,0.00024100428],"domain_scores_gemma":[0.99891305,0.000093056886,0.0002163073,0.00039907865,0.0001274184,0.0002510682],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021960949,0.00020084177,0.0005050677,0.00044412448,0.00014269013,0.000030824966,0.00007416124,0.00012709788,0.00014095583],"category_scores_gemma":[0.00018802957,0.00016035476,0.00014889245,0.00045331425,0.000013377431,0.00017656725,0.00004169056,0.0002809902,0.000009102841],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015204027,0.00013876482,0.96494645,0.000043761396,0.0012255335,0.000048273425,0.0001766094,0.0013857309,0.03134477,0.000030289304,0.00004920067,0.00045854843],"study_design_scores_gemma":[0.0032205235,0.00025348077,0.9863371,0.000048110884,0.002783958,0.0000073170713,0.00005784758,0.0059339986,0.00065142754,0.00002370255,0.00050098426,0.00018154878],"about_ca_topic_score_codex":0.00043425395,"about_ca_topic_score_gemma":0.0014391778,"teacher_disagreement_score":0.030693343,"about_ca_system_score_codex":0.000075171265,"about_ca_system_score_gemma":0.00019197898,"threshold_uncertainty_score":0.6539077},"labels":[],"label_agreement":null},{"id":"W1979367529","doi":"10.1007/s10096-011-1171-8","title":"Antibiotic administration longer than eight hours after triage and mortality of community-acquired pneumonia in patients with diabetes mellitus","year":2011,"lang":"en","type":"article","venue":"European Journal of Clinical Microbiology & Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Memorial University of Newfoundland","funders":"","keywords":"Medicine; Triage; Diabetes mellitus; Pneumonia; Community-acquired pneumonia; Retrospective cohort study; Antibiotics; Emergency department; Logistic regression; Internal medicine; Emergency medicine","score_opus":0.031186175936260458,"score_gpt":0.2972217160124413,"score_spread":0.26603554007618085,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979367529","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99882096,0.0002656819,0.000008239564,0.000036220357,0.00031332622,0.00022388817,0.00006227835,0.000015821639,0.00025356587],"genre_scores_gemma":[0.99941814,0.00009294066,0.000015051573,0.00033281388,0.00009148267,0.000001083014,0.000020331076,0.000023761626,0.000004424887],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9961222,0.0022327946,0.0012173096,0.00015339114,0.00006904743,0.00020526642],"domain_scores_gemma":[0.99812216,0.0003058439,0.00078486063,0.00027962442,0.0002711456,0.00023639851],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010247632,0.00019250464,0.0007423107,0.0001918328,0.00007243931,0.000010735692,0.0001054273,0.0000872999,0.000039135342],"category_scores_gemma":[0.0004946343,0.00013174102,0.00023955759,0.00015154072,0.00070475606,0.00012038195,0.00005027176,0.00046780138,0.0000058536584],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009483577,0.0032519354,0.99168044,0.00006427755,0.00034554323,0.000103087754,0.00016102607,5.855113e-7,0.0021640335,0.0000016548548,0.000013789676,0.0012652741],"study_design_scores_gemma":[0.0045044827,0.008610072,0.98542887,0.00027214873,0.0005415921,0.000045061122,0.00003621958,2.0655419e-7,0.0003573189,0.000014205694,0.00006468453,0.0001251453],"about_ca_topic_score_codex":0.0000040471273,"about_ca_topic_score_gemma":0.000026175137,"teacher_disagreement_score":0.0062515712,"about_ca_system_score_codex":0.000018481613,"about_ca_system_score_gemma":0.00012025379,"threshold_uncertainty_score":0.5372243},"labels":[],"label_agreement":null},{"id":"W1979454894","doi":"10.1007/s12019-002-0029-5","title":"Guidelines for community-acquired pneumonia in the US and Canada: A practical approach to antibiotic selection","year":2002,"lang":"en","type":"review","venue":"Comprehensive Therapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Antibiotic therapy; Intensive care medicine; Antibiotics; Selection (genetic algorithm); Internal medicine; Artificial intelligence","score_opus":0.3081223291767539,"score_gpt":0.430631914266792,"score_spread":0.12250958509003806,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979454894","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0059736106,0.98540837,0.00016697221,0.0027801248,0.00027530902,0.0049392874,0.00004095306,0.000051333278,0.00036401572],"genre_scores_gemma":[0.0004764236,0.989016,0.00046810418,0.009213171,0.0003084306,0.0002856594,0.00006189513,0.00006120984,0.000109124085],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99776727,0.00079071376,0.0005773484,0.00031490705,0.00022673428,0.00032304288],"domain_scores_gemma":[0.9979484,0.0007897828,0.00018012653,0.0004682047,0.0004826562,0.00013080066],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00029694586,0.00040613487,0.0013212516,0.0002157991,0.00036593017,0.000046584115,0.00017217538,0.00023058573,0.00000412007],"category_scores_gemma":[0.00024193314,0.0002496352,0.00019903139,0.00047278157,0.00008511415,0.000037400416,0.000037026388,0.00063604885,0.000003767016],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013692191,0.0015242489,0.000342323,0.012037608,0.0009617307,0.000054628217,0.00085409335,0.000028202618,0.0007544948,0.00016177916,0.04172291,0.9414211],"study_design_scores_gemma":[0.0006329887,0.0004897359,0.0009458723,0.0014216116,0.00027662242,0.0012078687,0.00017115753,0.00009477915,0.0000018894115,0.0000052372984,0.99450725,0.0002450052],"about_ca_topic_score_codex":0.025071971,"about_ca_topic_score_gemma":0.021734577,"teacher_disagreement_score":0.9527843,"about_ca_system_score_codex":0.00020531399,"about_ca_system_score_gemma":0.0006623625,"threshold_uncertainty_score":0.9999956},"labels":[],"label_agreement":null},{"id":"W1979605701","doi":"10.1108/09526860710754406","title":"Timing of antibiotics in CAP","year":2007,"lang":"en","type":"article","venue":"International Journal of Health Care Quality Assurance","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Community-acquired pneumonia; Context (archaeology); Antibiotics; Observational study; Receipt; Pneumonia; Emergency department; Emergency medicine; Intensive care medicine; Prospective cohort study; Population; Pediatrics; Surgery; Internal medicine; Environmental health","score_opus":0.05177095395465322,"score_gpt":0.4537188915963119,"score_spread":0.4019479376416587,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979605701","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98779845,0.001090285,0.0025859545,0.0063273683,0.0012471311,0.00008211309,0.000011410097,0.0000053978665,0.000851867],"genre_scores_gemma":[0.9974895,0.00013882434,0.0006945783,0.0014419836,0.00021135266,4.5129955e-8,0.000002352414,0.0000057960187,0.000015562313],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99805456,0.000099402845,0.0011107029,0.000070853814,0.0005243824,0.00014009312],"domain_scores_gemma":[0.9980259,0.0002002283,0.0007283271,0.00008314856,0.0008774443,0.00008496486],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017350663,0.00006339296,0.00031320748,0.0002861827,0.000024891517,0.000005108489,0.00011109012,0.00005283577,0.000013735776],"category_scores_gemma":[0.00040067674,0.000055395543,0.000110452245,0.00013612516,0.000045035784,0.00008081738,0.000011245608,0.0002648511,0.0000022859738],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041697436,0.00048143332,0.94120497,0.0006337038,0.00016709502,0.0002905689,0.00466908,0.0003190966,0.01943847,0.0008580016,0.0005108802,0.031009706],"study_design_scores_gemma":[0.0013654537,0.0002694306,0.98076,0.0008250627,0.000008146958,0.00030988152,0.0018307252,0.000009041713,0.0049867737,0.000048375685,0.009524023,0.000063098414],"about_ca_topic_score_codex":0.00015788076,"about_ca_topic_score_gemma":0.00025766238,"teacher_disagreement_score":0.039555,"about_ca_system_score_codex":0.00029565094,"about_ca_system_score_gemma":0.0005361263,"threshold_uncertainty_score":0.22589646},"labels":[],"label_agreement":null},{"id":"W1980338196","doi":"10.1186/1471-2334-12-135","title":"Population-based cohort study of outpatients with pneumonia: rationale, design and baseline characteristics","year":2012,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dalhousie University; University of Alberta","funders":"Pfizer; Alberta Heritage Foundation for Medical Research; Fondation pour la Recherche Médicale; Pfizer Canada; Canadian Institutes of Health Research; Abbott Canada","keywords":"Medicine; Community-acquired pneumonia; Pneumonia severity index; Pneumonia; Emergency department; Cohort; Population; Cohort study; Emergency medicine; Ambulatory; Pediatrics; Internal medicine","score_opus":0.018036985058653445,"score_gpt":0.26342875647250485,"score_spread":0.2453917714138514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1980338196","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99258333,0.000040350285,0.0053803925,0.000014959117,0.0001397542,0.0016564567,0.00003583401,0.00009148153,0.00005746593],"genre_scores_gemma":[0.99924207,0.000004157953,0.000083158346,0.00015405934,0.00013219344,0.00023037061,0.00009882315,0.00002409724,0.000031088977],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99889845,0.00016913426,0.00029217248,0.00018209146,0.00028032323,0.00017783753],"domain_scores_gemma":[0.9989172,0.0002514236,0.00016653654,0.00021826263,0.00022285155,0.0002237209],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015967496,0.00016393677,0.00031524312,0.0001680774,0.00016287329,0.000015093268,0.000023994124,0.00004667374,0.000043035983],"category_scores_gemma":[0.00027769274,0.00012629821,0.000046341025,0.00019945345,0.000046320543,0.00012850754,0.000012636361,0.00007769915,0.000006209714],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013940154,0.0032811367,0.9954296,0.00010731213,0.00009455647,0.0000030161,0.000065612236,0.00050960184,0.00017656546,0.000013123912,0.000017344515,0.00016273548],"study_design_scores_gemma":[0.0021950016,0.0011635398,0.99485624,0.000046234578,0.0006412605,0.00001717169,0.00004039279,0.0008170431,0.00002852591,0.0000041540316,0.000054376582,0.00013604714],"about_ca_topic_score_codex":0.000059440114,"about_ca_topic_score_gemma":0.000032862557,"teacher_disagreement_score":0.0066587455,"about_ca_system_score_codex":0.000058623187,"about_ca_system_score_gemma":0.00013645987,"threshold_uncertainty_score":0.5150292},"labels":[],"label_agreement":null},{"id":"W1980634325","doi":"10.1378/chest.10220","title":"Improving Pneumococcal Vaccination Rates in Patients With Chronic Obstructive Pulmonary Disease","year":2010,"lang":"en","type":"article","venue":"CHEST Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Medicine; Vaccination; Pneumococcal vaccination; Pneumococcal disease; Exacerbation; COPD; Intensive care medicine; Population; Pneumococcal infections; Disease; Pediatrics; Internal medicine; Immunology; Streptococcus pneumoniae; Environmental health","score_opus":0.006161061442931233,"score_gpt":0.24089074956938716,"score_spread":0.23472968812645592,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1980634325","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986221,0.000033367236,0.000057865684,0.00036820938,0.00038950425,0.00020498248,0.000002710121,0.000019437231,0.00030180387],"genre_scores_gemma":[0.99935246,0.000005040645,0.000057348,0.000051961102,0.00043765944,0.000011840089,0.000008195701,0.00001724826,0.000058281075],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99926424,0.000024228519,0.00018854578,0.00014132677,0.00017415067,0.00020752233],"domain_scores_gemma":[0.9993163,0.000023286299,0.00011284265,0.00012363403,0.00015763036,0.00026633864],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009892076,0.000114752365,0.00013270459,0.00016931962,0.00015756195,0.00003621452,0.00005506991,0.00006419592,0.00011884166],"category_scores_gemma":[0.00010811,0.00008106286,0.000050192288,0.00016304573,0.000038633745,0.00025221816,0.000016477508,0.0007862378,0.000012444231],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010548173,0.00024991948,0.94581085,0.00005262355,0.000012437617,0.000101932856,0.000038118782,0.0000128024285,0.040949184,0.000012473686,0.0000037188152,0.012650448],"study_design_scores_gemma":[0.0014121087,0.00019331314,0.99650115,0.000045913082,0.000045350018,0.00014387652,0.00002030862,0.00022714595,0.0005898548,0.00007146972,0.0006489907,0.00010051902],"about_ca_topic_score_codex":0.0000035465778,"about_ca_topic_score_gemma":0.000021470894,"teacher_disagreement_score":0.05069029,"about_ca_system_score_codex":0.00017841408,"about_ca_system_score_gemma":0.00033627398,"threshold_uncertainty_score":0.3415856},"labels":[],"label_agreement":null},{"id":"W1980900850","doi":"10.1378/chest.124.4_meetingabstracts.314s-a","title":"High Dose Intravenous Methylprednisolone in the Treatment of Severe Acute Respiratory Syndrome: A Case Repor","year":2003,"lang":"en","type":"article","venue":"CHEST Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Methylprednisolone; Medicine; Respiratory system; Anesthesia; Acute respiratory failure; Internal medicine; Mechanical ventilation","score_opus":0.03182323558220192,"score_gpt":0.3008123647201922,"score_spread":0.2689891291379903,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1980900850","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99756837,0.00067862007,0.00002612786,0.0005724953,0.00027303057,0.00027898795,0.0000084403155,0.000011938627,0.00058197667],"genre_scores_gemma":[0.99879384,0.00023810855,0.00027298828,0.00036424765,0.00010998609,0.000023238428,0.0000011431248,0.000016119498,0.000180312],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9986503,0.00025629046,0.00049528695,0.0001504051,0.00020521104,0.00024252351],"domain_scores_gemma":[0.9990966,0.00010306616,0.00022405069,0.0003410335,0.00008473243,0.00015054471],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005368208,0.00015777693,0.00037875175,0.000195452,0.00018150202,0.000022043121,0.00006376381,0.000113102076,0.00010085193],"category_scores_gemma":[0.0001106082,0.000092520095,0.00017208929,0.00032284582,0.0000991072,0.00006146608,0.000004958439,0.00034411543,0.000011411351],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044381927,0.00953038,0.05452788,0.00023174543,0.0020608455,0.77941453,0.015255962,0.00022550441,0.11993734,0.0003989641,0.0010103603,0.016962646],"study_design_scores_gemma":[0.0049902215,0.0058059897,0.06792278,0.0000984633,0.00071495574,0.86475563,0.0013788994,0.00000227427,0.0067682057,0.000266672,0.04711405,0.00018186796],"about_ca_topic_score_codex":0.000031509637,"about_ca_topic_score_gemma":0.000027917913,"teacher_disagreement_score":0.11316913,"about_ca_system_score_codex":0.00021262324,"about_ca_system_score_gemma":0.00032850154,"threshold_uncertainty_score":0.377286},"labels":[],"label_agreement":null},{"id":"W1981331746","doi":"10.1016/j.vaccine.2013.04.007","title":"Have changing pneumococcal vaccination programmes impacted disease in Ontario?","year":2013,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary; Mount Sinai Hospital; Hospital for Sick Children; University of Toronto; Public Health Ontario","funders":"","keywords":"Vaccination; Pneumococcal disease; Pneumococcal infections; Medicine; Virology; Streptococcus pneumoniae; Immunology; Biology; Microbiology; Antibiotics","score_opus":0.01342461329713176,"score_gpt":0.2663100794449067,"score_spread":0.25288546614777496,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981331746","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946616,0.00004661594,0.000037649526,0.0032398123,0.00012808698,0.00095854065,0.0000015157749,0.0001226624,0.0008034902],"genre_scores_gemma":[0.9973732,0.0000071519767,0.00003137631,0.00039413426,0.00011623456,0.00021907079,0.000042935917,0.000020414775,0.0017954486],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990062,0.000027230639,0.00024154426,0.00021753629,0.00013290384,0.00037457678],"domain_scores_gemma":[0.99932617,0.000020384274,0.000038534043,0.0002246929,0.00010483199,0.00028538282],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009271393,0.00015200845,0.0002156284,0.0004478522,0.00007883486,0.000034778877,0.000048771308,0.00007293588,0.0013836664],"category_scores_gemma":[0.000083081424,0.00011957332,0.00008151527,0.0003410157,0.000003409938,0.00019786818,0.000032307442,0.00026841913,0.00015205868],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038088794,0.00029751883,0.97855383,0.000033380154,0.000021364855,0.00004320855,0.00037288005,0.000016138707,0.016613059,0.00003529796,0.00016331428,0.0038119224],"study_design_scores_gemma":[0.0015976053,0.00017100447,0.9912507,0.00006804621,0.000042532596,0.0000213218,0.000090217814,0.0010533662,0.00040180373,0.00008087133,0.005094344,0.00012818271],"about_ca_topic_score_codex":0.0073172497,"about_ca_topic_score_gemma":0.018857481,"teacher_disagreement_score":0.016211255,"about_ca_system_score_codex":0.00026699994,"about_ca_system_score_gemma":0.00016279053,"threshold_uncertainty_score":0.9995292},"labels":[],"label_agreement":null},{"id":"W1981355511","doi":"10.1007/s10719-011-9344-3","title":"Experimental design to optimize an Haemophilus influenzae type b conjugate vaccine made with hydrazide-derivatized tetanus toxoid","year":2011,"lang":"en","type":"article","venue":"Glycoconjugate Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Cantox Health Sciences International","funders":"","keywords":"Toxoid; Reductive amination; Conjugate vaccine; Conjugate; Yield (engineering); Chemistry; Hydrazide; Tetanus; Vaccination; Microbiology; Biochemistry; Materials science; Biology; Organic chemistry; Virology; Mathematics; Catalysis; Antibiotics","score_opus":0.057358078315466014,"score_gpt":0.2933957892923913,"score_spread":0.23603771097692527,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981355511","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98752224,0.00019096052,0.005756554,0.0010807867,0.00069766655,0.0011957182,0.000006713561,0.00023676168,0.0033126066],"genre_scores_gemma":[0.9780564,0.00004800869,0.014940959,0.005600878,0.00056739483,0.00006344289,0.000006450241,0.00011429653,0.0006021999],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974604,0.00021164915,0.0007208467,0.0004536859,0.00044857812,0.00070480624],"domain_scores_gemma":[0.99750924,0.000051387506,0.00027812758,0.0005648518,0.00037952972,0.0012168575],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00044911532,0.00046811078,0.0006951226,0.00038790362,0.00049083086,0.00012576162,0.0002749527,0.00018053246,0.0015446611],"category_scores_gemma":[0.00011136619,0.00030640746,0.00014852641,0.00047251393,0.00010244131,0.0005415417,0.0000721684,0.0007080985,0.00033859466],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0084475465,0.0009447049,0.0051149614,0.00002109632,0.0004945215,0.0023060855,0.0025588656,0.0007843993,0.9758324,0.000046806617,0.0016779276,0.0017706994],"study_design_scores_gemma":[0.022463614,0.026820824,0.027650645,0.00050609314,0.00071819697,0.030751131,0.0014079789,0.00057905185,0.8636075,0.00027138036,0.0237141,0.0015094545],"about_ca_topic_score_codex":0.00004025922,"about_ca_topic_score_gemma":0.0000066623807,"teacher_disagreement_score":0.112224855,"about_ca_system_score_codex":0.00019431017,"about_ca_system_score_gemma":0.00040262457,"threshold_uncertainty_score":0.9999388},"labels":[],"label_agreement":null},{"id":"W1981471909","doi":"10.15273/dmj.vol41no2.5952","title":"Pneumonia Presenting as Abdominal Pain in a Pediatric Patient","year":2015,"lang":"en","type":"article","venue":"Dalhousie Medical Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Tachypnea; Medicine; Pneumonia; Pleural effusion; Streptococcus pneumoniae; Abdominal pain; Appendicitis; Presentation (obstetrics); Pediatrics; Intensive care medicine; Surgery; Anesthesia; Internal medicine; Antibiotics","score_opus":0.02000054493166532,"score_gpt":0.29202824651026515,"score_spread":0.27202770157859985,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981471909","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9866022,0.00023801025,0.00030650367,0.006368637,0.0007765005,0.00017947565,8.5155665e-7,0.000051936895,0.005475883],"genre_scores_gemma":[0.9944815,0.00017115357,0.00014839473,0.0030821462,0.001855106,0.000014881444,0.0000026841603,0.000028061677,0.00021605805],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99689114,0.00036735606,0.0006435284,0.00020944691,0.0013899049,0.00049860904],"domain_scores_gemma":[0.9978587,0.00015843981,0.00016687179,0.000169476,0.00017140736,0.0014750946],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023602885,0.0001695211,0.00033227526,0.00036949894,0.00012847304,0.000046535744,0.00015186648,0.00020284472,0.0002934617],"category_scores_gemma":[0.0044838917,0.00012588722,0.00013955565,0.00044856797,0.000083199106,0.00010687529,0.000083008235,0.0012934585,0.00014405316],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024094374,0.001448363,0.79949254,0.00009643202,0.00007112234,0.022965746,0.0030826002,0.00005356269,0.0011233811,0.00004209279,0.013304584,0.15807864],"study_design_scores_gemma":[0.015327765,0.006579646,0.48668665,0.0008476976,0.00048330822,0.06362519,0.0031130763,0.0068762586,0.00024753343,0.0014622387,0.41368648,0.0010641454],"about_ca_topic_score_codex":0.00002410151,"about_ca_topic_score_gemma":0.00002048555,"teacher_disagreement_score":0.40038192,"about_ca_system_score_codex":0.00014194076,"about_ca_system_score_gemma":0.0013593001,"threshold_uncertainty_score":0.56195056},"labels":[],"label_agreement":null},{"id":"W1981533737","doi":"10.1086/382694","title":"Quinolone Resistance among Pneumococci: Therapeutic and Diagnostic Implications","year":2004,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Levofloxacin; Medicine; Streptococcus pneumoniae; Quinolone; Pneumonia; Intensive care medicine; Antibiotic resistance; Community-acquired pneumonia; Drug resistance; Antibiotics; Microbiology; Internal medicine; Biology","score_opus":0.03208626736098268,"score_gpt":0.3542329549704722,"score_spread":0.3221466876094895,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981533737","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9910159,0.0013061775,0.0002459454,0.0038663985,0.0003001311,0.0005506391,0.000029734874,0.0005265798,0.0021584707],"genre_scores_gemma":[0.99538517,0.0011553933,0.000006189168,0.0027164111,0.0003130653,0.00017725721,0.000014421035,0.000027108443,0.00020495584],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99868816,0.00008293544,0.00046416078,0.0003952207,0.000110183064,0.00025936804],"domain_scores_gemma":[0.99796265,0.0009099526,0.00012112832,0.0004323304,0.000117332886,0.00045658107],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000107094864,0.00017502144,0.0003605761,0.00009398505,0.00029865312,0.00003959881,0.00006198424,0.00014635918,0.000036410755],"category_scores_gemma":[0.001481594,0.00014749178,0.0002111842,0.00026708562,0.0006099128,0.000105975116,0.00004178708,0.00029171398,0.0000813269],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000102841495,0.0009573484,0.9942401,0.00005002123,0.00011174762,0.000026389236,0.000018808194,0.000013260679,0.0003088832,0.0020412458,0.00028901995,0.0019328856],"study_design_scores_gemma":[0.001573916,0.00039486654,0.9827195,0.0001163302,0.0003927719,0.000022106631,0.000013463888,0.0000024504102,0.0000179918,0.0092090955,0.0053746705,0.00016287205],"about_ca_topic_score_codex":0.000015309079,"about_ca_topic_score_gemma":0.00014238794,"teacher_disagreement_score":0.011520642,"about_ca_system_score_codex":0.00006931467,"about_ca_system_score_gemma":0.00018537465,"threshold_uncertainty_score":0.601454},"labels":[],"label_agreement":null},{"id":"W1981615629","doi":"10.1017/s0950268802007926","title":"Variation in management of community-acquired pneumonia requiring admission to Alberta, Canada hospitals","year":2003,"lang":"en","type":"article","venue":"Epidemiology and Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Health","funders":"","keywords":"Medicine; Comorbidity; Pneumonia; Community-acquired pneumonia; Emergency medicine; Mortality rate; Metropolitan area; Demography; Internal medicine","score_opus":0.030700938147005336,"score_gpt":0.3141096917410262,"score_spread":0.28340875359402085,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981615629","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99184024,0.000039735663,0.0008119846,0.0016785911,0.00031680719,0.00027550667,8.7168405e-7,0.000013940528,0.005022346],"genre_scores_gemma":[0.9982708,0.0001242599,0.00012711591,0.0011256128,0.000015077016,0.000032437747,0.0000051805287,0.0000069604307,0.00029251986],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99858975,0.0006521337,0.0003963188,0.0001297236,0.000048093643,0.00018398327],"domain_scores_gemma":[0.9991883,0.00036349232,0.000110930414,0.00018497558,0.00003697713,0.00011533148],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011522959,0.000099637575,0.0003056753,0.00013607756,0.00015321985,0.0000015506604,0.000021949289,0.000112274254,0.000040555555],"category_scores_gemma":[0.0009530258,0.000089483474,0.00003230827,0.00022973528,0.000034682424,0.000062510735,0.000022290233,0.00017386602,0.0000040932973],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037843125,0.00013060776,0.9747978,0.00023182073,0.00007076706,0.0000055402843,0.0003685883,0.0005924419,0.016273733,0.004798786,0.00031889268,0.0023732074],"study_design_scores_gemma":[0.00043057118,0.0003059343,0.98862886,0.00014339441,0.000037608806,0.000035404875,0.000073259405,0.000046698962,0.00046116346,0.00061152445,0.009147859,0.00007773996],"about_ca_topic_score_codex":0.222059,"about_ca_topic_score_gemma":0.108580895,"teacher_disagreement_score":0.1134781,"about_ca_system_score_codex":0.00013589388,"about_ca_system_score_gemma":0.00007204282,"threshold_uncertainty_score":0.90768516},"labels":[],"label_agreement":null},{"id":"W1981623833","doi":"10.1016/j.jinf.2003.11.013","title":"Resolution of symptoms in patients with community-acquired pneumonia treated on an ambulatory basis","year":2004,"lang":"en","type":"article","venue":"Journal of Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Bayer (Canada); University of Alberta","funders":"Bayer Canada","keywords":"Medicine; Sputum; Pneumonia; Community-acquired pneumonia; Chest pain; Ambulatory; Internal medicine; Population; Physical therapy; Tuberculosis","score_opus":0.012199087996251651,"score_gpt":0.2584773423237814,"score_spread":0.24627825432752973,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981623833","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992365,0.0000065044414,0.00007710736,0.000072055605,0.00015313216,0.00016429089,0.000002422847,0.000019242038,0.00026871255],"genre_scores_gemma":[0.99976456,0.000012041358,0.00002387143,0.00011004171,0.00005859499,0.0000025172524,0.000007753746,0.000014783468,0.0000058081696],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998911,0.00019904319,0.00043429816,0.00007000946,0.00026572522,0.00011992785],"domain_scores_gemma":[0.99895936,0.000028625174,0.00038661197,0.00018976977,0.0003351794,0.00010046795],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032238572,0.00011400873,0.00028187328,0.0005839072,0.00010986375,0.000007707097,0.000035408615,0.000107743006,0.000008110638],"category_scores_gemma":[0.00005755711,0.00008331863,0.000088950575,0.0004060389,0.000065441935,0.00025664587,0.0000069455377,0.00037297775,0.0000028278014],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007305603,0.0024245786,0.9695033,0.000037092774,0.00007990288,0.000009756099,0.0002563473,0.0042366246,0.021436637,0.000023246324,0.0000040087193,0.0012579375],"study_design_scores_gemma":[0.005020164,0.010916507,0.9786042,0.00054021255,0.0000951057,0.000068211215,0.00003141184,0.000017897039,0.0045086397,0.00003070855,0.0000933516,0.000073573014],"about_ca_topic_score_codex":0.00028663684,"about_ca_topic_score_gemma":0.00015686873,"teacher_disagreement_score":0.016927997,"about_ca_system_score_codex":0.0004024758,"about_ca_system_score_gemma":0.0001077424,"threshold_uncertainty_score":0.33976352},"labels":[],"label_agreement":null},{"id":"W1981685245","doi":"10.1159/000255764","title":"Long-Term Survival after Hospitalization for Community-Acquired and Healthcare-Associated Pneumonia","year":2009,"lang":"en","type":"article","venue":"Respiration","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Heart, Lung, and Blood Institute; National Institutes of Health","keywords":"Medicine; Pneumonia; Hazard ratio; Confidence interval; Proportional hazards model; Survival analysis; Internal medicine; Community-acquired pneumonia; Cohort study; Cohort; Confounding; Pediatrics; Surgery","score_opus":0.03178191543975382,"score_gpt":0.3204696387342748,"score_spread":0.28868772329452097,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981685245","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99261504,0.0001640974,0.0019145235,0.004082296,0.0001789472,0.00075521343,0.00001745805,0.0001262839,0.00014612093],"genre_scores_gemma":[0.9969178,0.00004641144,0.000027441401,0.0024828962,0.0001307302,0.0000708134,0.00015934395,0.00001761071,0.00014694947],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990047,0.00019194168,0.0002783329,0.00016474767,0.00015701039,0.00020326399],"domain_scores_gemma":[0.99927574,0.00006214475,0.00010722193,0.0002256315,0.00020939914,0.00011987095],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034508813,0.00013544182,0.00022394532,0.0001235707,0.00035403424,0.000048347058,0.000036634545,0.00016117576,0.000007616069],"category_scores_gemma":[0.00018165789,0.00012717722,0.000068055386,0.00019366626,0.000040989664,0.0001660186,0.000011409265,0.00012724049,0.000004847835],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004025096,0.0007718172,0.7897247,0.00023976025,0.000084932224,0.000015501344,0.0010399466,0.000012932389,0.17989744,0.0008140998,0.000063370615,0.026933003],"study_design_scores_gemma":[0.001215342,0.001814433,0.9949455,0.00010432925,0.00007107696,0.000010588879,0.000024886922,0.00013377852,0.00064239546,0.00023713212,0.0006702431,0.00013027902],"about_ca_topic_score_codex":0.000031587715,"about_ca_topic_score_gemma":0.00025009355,"teacher_disagreement_score":0.20522083,"about_ca_system_score_codex":0.00011260483,"about_ca_system_score_gemma":0.00006529011,"threshold_uncertainty_score":0.51861364},"labels":[],"label_agreement":null},{"id":"W1981722865","doi":"10.12968/hmed.2013.74.4.212","title":"The clinical and ecological impact of childhood pneumococcal vaccination","year":2013,"lang":"en","type":"review","venue":"British Journal of Hospital Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Medicine; Vaccination; Serotype; Streptococcus pneumoniae; Pneumococcal vaccination; Incidence (geometry); Pneumococcal disease; Pneumococcal infections; Pneumococcal vaccine; Immunology; Pediatrics; Intensive care medicine; Microbiology; Antibiotics","score_opus":0.03466130203872231,"score_gpt":0.3915755786053523,"score_spread":0.35691427656663,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981722865","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.039344557,0.95764977,0.0000046168957,0.0005899967,0.0012408111,0.00086647354,0.000011901297,0.00001068648,0.00028121696],"genre_scores_gemma":[0.014106808,0.98387784,0.000016782873,0.000038764552,0.0018348786,0.000015754229,0.000008099113,0.000032122723,0.00006893401],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9964776,0.00035449065,0.0022535662,0.00021660647,0.0004312271,0.00026652875],"domain_scores_gemma":[0.9961917,0.00092315685,0.0016798007,0.00020343403,0.00058109185,0.0004208614],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013958617,0.00029893735,0.0026086185,0.00018276896,0.00015660402,0.000035505916,0.00022372048,0.00042990842,0.00018433099],"category_scores_gemma":[0.003215978,0.0001539306,0.0011310305,0.0002581276,0.0005102666,0.00011012279,0.00006942494,0.0015849292,0.0000081021735],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000073210367,0.0005526062,0.0025181428,0.0007662526,0.0007028286,0.0003662324,0.000019520212,6.695431e-8,0.000002253422,0.0000107438145,0.002773292,0.9922807],"study_design_scores_gemma":[0.002159043,0.017240549,0.59157395,0.019893005,0.0025341583,0.027135514,0.00005696537,0.0000011147217,1.369447e-7,0.0001279311,0.33907634,0.00020127845],"about_ca_topic_score_codex":0.000017993469,"about_ca_topic_score_gemma":0.0000032760117,"teacher_disagreement_score":0.99207944,"about_ca_system_score_codex":0.00009258109,"about_ca_system_score_gemma":0.0006004295,"threshold_uncertainty_score":0.68858165},"labels":[],"label_agreement":null},{"id":"W1981812861","doi":"10.1128/aac.49.5.1943-1948.2005","title":"Pharmacodynamic Activity of Telithromycin at Simulated Clinically Achievable Free-Drug Concentrations in Serum and Epithelial Lining Fluid against Efflux ( <i>mefE</i> )-Producing Macrolide- Resistant <i>Streptococcus pneumoniae</i> for Which Telithromycin MICs Vary","year":2005,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Health Sciences Centre","funders":"","keywords":"Telithromycin; Streptococcus pneumoniae; Pharmacokinetics; Microbiology; Pharmacodynamics; Ketolide; Antibacterial agent; Efflux; Pharmacology; Chemistry; Antibiotics; Biology; Biochemistry","score_opus":0.01250258994645172,"score_gpt":0.289382507772369,"score_spread":0.2768799178259173,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981812861","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98825526,0.000053914795,0.000059934304,0.009356303,0.00018505186,0.0013995019,0.00048558484,0.00007166307,0.00013275405],"genre_scores_gemma":[0.98898035,0.0022360599,0.00038293266,0.007757399,0.00027796076,0.000020676782,0.00006097323,0.00006966899,0.00021394773],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99757,0.00010964987,0.00089311524,0.0007102743,0.0001822744,0.0005346894],"domain_scores_gemma":[0.99861854,0.00022145806,0.0003252162,0.0004308245,0.0002042655,0.00019967237],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00050668087,0.00038501303,0.00075299793,0.00013558635,0.000356259,0.000045628654,0.0001457528,0.0002276463,0.000034561388],"category_scores_gemma":[0.000102117454,0.0003536145,0.00016373457,0.00033312323,0.00021724173,0.00020417043,0.00009828632,0.0003706895,0.0000028541742],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007267913,0.000601535,0.14640783,0.00022964133,0.00016683238,0.0000070583474,0.0006982497,0.0007313183,0.84522563,0.0000022382392,0.0015414851,0.00366136],"study_design_scores_gemma":[0.028006218,0.0009678217,0.232339,0.001104426,0.0004070381,0.00007332973,0.00013185907,0.020128887,0.68038535,0.000027819247,0.035393603,0.0010346376],"about_ca_topic_score_codex":0.00009695079,"about_ca_topic_score_gemma":0.0004041381,"teacher_disagreement_score":0.1648403,"about_ca_system_score_codex":0.00013233283,"about_ca_system_score_gemma":0.00019942659,"threshold_uncertainty_score":0.9998916},"labels":[],"label_agreement":null},{"id":"W1981947129","doi":"10.1086/505871","title":"Macrolide Resistance in Bacteremic Pneumococcal Disease: Implications for Patient Management","year":2006,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":153,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; University Health Network; Mount Sinai Hospital","funders":"","keywords":"Bacteremia; Medicine; Streptococcus pneumoniae; Internal medicine; Antibiotics; Pneumonia; Erythromycin; Macrolide Antibiotics; Population; Microbiology; Biology","score_opus":0.02230144104707903,"score_gpt":0.3492671667033603,"score_spread":0.32696572565628124,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981947129","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98547375,0.00049366214,0.00047220505,0.0026847348,0.00041469757,0.001714682,0.00025527005,0.00027322583,0.008217754],"genre_scores_gemma":[0.99621433,0.00014870414,0.000031374617,0.001339569,0.00035359836,0.0009923003,0.0001440545,0.000033122215,0.0007429311],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99818814,0.00008692457,0.0007690038,0.0004869201,0.000114011425,0.00035497948],"domain_scores_gemma":[0.9985535,0.00035105075,0.00014119942,0.00048166094,0.0001098469,0.00036272657],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000117150914,0.00019366495,0.00035990818,0.00016809751,0.00017485139,0.00003230787,0.00007945083,0.000093772054,0.000045978937],"category_scores_gemma":[0.00022839225,0.00017592973,0.0003990227,0.00030564953,0.0001619274,0.00007323083,0.000049181486,0.00017688503,0.00004113985],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010808118,0.0022859056,0.9843023,0.00018525358,0.000055849498,0.000036287965,0.0000038933263,0.000039889073,0.00023364238,0.005435305,0.0039026148,0.0034109876],"study_design_scores_gemma":[0.0016779769,0.00016568264,0.9019468,0.000119292585,0.0002536256,0.0000026872106,0.000006032688,0.000015370415,0.0000053067847,0.0112820435,0.08435122,0.00017400562],"about_ca_topic_score_codex":0.000007807044,"about_ca_topic_score_gemma":0.00015427706,"teacher_disagreement_score":0.08235554,"about_ca_system_score_codex":0.00015511665,"about_ca_system_score_gemma":0.000121899175,"threshold_uncertainty_score":0.7174206},"labels":[],"label_agreement":null},{"id":"W1982631962","doi":"10.1093/jac/dkm273","title":"Macrolide resistance mechanisms among Streptococcus pneumoniae isolated over 6 years of Canadian Respiratory Organism Susceptibility Study (CROSS) (1998 2004)","year":2007,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Sciences Centre; University of Manitoba","funders":"Bayer Canada; Manitoba Health Research Council; Sanofi; Bristol-Myers Squibb","keywords":"23S ribosomal RNA; Microbiology; Streptococcus pneumoniae; Erythromycin; Lincosamides; Biology; Macrolide Antibiotics; Mycoplasma pneumoniae; Ribosomal RNA; Serotype; Antibiotics; Gene; Genetics; Medicine; RNA","score_opus":0.011340875314007893,"score_gpt":0.27938762225523023,"score_spread":0.2680467469412223,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1982631962","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978808,0.000046629433,0.00027861397,0.00029688538,0.0004775242,0.00065163727,0.00003120228,0.000030067727,0.00030660396],"genre_scores_gemma":[0.9973564,0.0000449591,0.00018133386,0.0018246794,0.00024826574,0.0000011489552,0.0000019651075,0.0000673593,0.00027384955],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9973609,0.00010014703,0.001256587,0.00031381065,0.00043167835,0.00053687464],"domain_scores_gemma":[0.99765986,0.00006801884,0.0007995871,0.00048655615,0.0004937396,0.000492236],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0013972834,0.00028279054,0.0007240205,0.0010681509,0.00016644137,0.000047371712,0.0002663276,0.0002921103,0.00018426143],"category_scores_gemma":[0.00008681587,0.00026357654,0.00033862627,0.0010234651,0.00023337276,0.00020709031,0.000021623466,0.0006901337,0.00001165511],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042541782,0.0005994684,0.26116195,0.000034299326,0.0002430001,0.00045322184,0.00072159217,0.000010857539,0.7343466,0.000007952389,0.0017362878,0.0002593386],"study_design_scores_gemma":[0.0052820784,0.0014215631,0.8208482,0.00018901347,0.00012639628,0.00010037067,0.00028705416,0.0000022338031,0.15616769,0.00004690694,0.015243793,0.0002846763],"about_ca_topic_score_codex":0.0023087033,"about_ca_topic_score_gemma":0.04648879,"teacher_disagreement_score":0.57817894,"about_ca_system_score_codex":0.00040475492,"about_ca_system_score_gemma":0.00081522635,"threshold_uncertainty_score":0.99998164},"labels":[],"label_agreement":null},{"id":"W1982668492","doi":"10.1371/journal.pone.0079578","title":"Nasopharyngeal Carriage and Transmission of Streptococcus pneumoniae in American Indian Households after a Decade of Pneumococcal Conjugate Vaccine Use","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; U.S. Public Health Service; National Institute on Minority Health and Health Disparities; Centers for Disease Control and Prevention; National Institutes of Health; Wellcome Trust; Thrasher Research Fund; GlaxoSmithKline; Bill and Melinda Gates Foundation; Pfizer; Sanofi; Foundation for the National Institutes of Health","keywords":"Carriage; Pneumococcal conjugate vaccine; Streptococcus pneumoniae; Medicine; Transmission (telecommunications); Pneumococcal infections; Serotype; Cohort; Pediatrics; Cohort study; Immunology; Internal medicine; Biology; Microbiology","score_opus":0.020842781450808937,"score_gpt":0.24349860319064695,"score_spread":0.222655821739838,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1982668492","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987013,0.00007131296,0.000013397711,0.00046007245,0.000016386455,0.00057672145,0.0000395409,0.00003821634,0.00008305526],"genre_scores_gemma":[0.99937385,0.00014445923,0.000098179575,0.0001866113,0.000052588402,0.00006833751,0.0000064085357,0.00003320893,0.00003637064],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99860406,0.00011505019,0.00048610353,0.00028033525,0.00025903297,0.00025543923],"domain_scores_gemma":[0.99907523,0.00013184121,0.00016742936,0.00029720156,0.000081598075,0.00024669847],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015952719,0.00018833611,0.000711729,0.00026320855,0.000030449148,0.00000848952,0.00006528536,0.00011303108,0.000031368243],"category_scores_gemma":[0.000093170675,0.00015987013,0.00008105543,0.0003342412,0.00015712227,0.0001103129,0.000031552267,0.00028828616,0.0000024961603],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000116769974,0.0007621003,0.4885987,0.0002486894,0.00007368614,0.000026218037,0.0004040886,0.0000021846754,0.5084438,0.0000049771647,0.0000013312109,0.0013174864],"study_design_scores_gemma":[0.0019984134,0.0013094937,0.8892594,0.0006358334,0.00021254635,0.00000991483,0.000052434993,0.00013649095,0.10606882,0.000012874454,0.00017176295,0.00013202801],"about_ca_topic_score_codex":0.00017794652,"about_ca_topic_score_gemma":0.00011885476,"teacher_disagreement_score":0.40237492,"about_ca_system_score_codex":0.00002923014,"about_ca_system_score_gemma":0.00006236718,"threshold_uncertainty_score":0.65193146},"labels":[],"label_agreement":null},{"id":"W1983560446","doi":"10.1177/1479972311415129","title":"Review Series: Old age: Pneumonia in old age","year":2011,"lang":"en","type":"review","venue":"Chronic Respiratory Disease","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Observational study; Presentation (obstetrics); Pneumonia; Etiology; Epidemiology; Intensive care medicine; Gerontology; Pediatrics; Family medicine; Pathology; Surgery; Internal medicine","score_opus":0.08026598042669694,"score_gpt":0.36302533040393875,"score_spread":0.28275934997724184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1983560446","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000287656,0.9915656,0.00000144752,0.00013222032,0.00076373445,0.004190382,0.00018475678,0.00031423013,0.002818896],"genre_scores_gemma":[0.000006623483,0.98330355,0.0000055819783,0.007844214,0.0010425444,0.0019454372,0.0002538846,0.0002856777,0.005312517],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9939883,0.00073937664,0.0021350894,0.0015055949,0.00049552694,0.0011361345],"domain_scores_gemma":[0.9946226,0.00010988088,0.0007482606,0.0028006516,0.0001312085,0.0015874259],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["metaepi_narrow","insufficient_payload"],"category_scores_codex":[0.0006333174,0.0013611614,0.004197567,0.0007989031,0.00021778296,0.00006803796,0.0006991441,0.00070260966,0.0011283528],"category_scores_gemma":[0.0005593697,0.0010959089,0.0019619004,0.0014350034,0.00048040433,0.00030283318,0.00027141336,0.0018679029,0.0017706366],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037951268,0.000760192,0.00017895704,0.43255922,0.00039076878,0.012366804,0.00003877245,9.832871e-7,0.000017148199,0.0004279485,0.019730542,0.5334907],"study_design_scores_gemma":[0.00076318934,0.00031414023,0.00034628963,0.16485727,0.0030921225,0.00011842768,0.0000026019165,3.3195104e-7,3.8458154e-7,0.000022852175,0.8296372,0.0008451392],"about_ca_topic_score_codex":0.000021043417,"about_ca_topic_score_gemma":0.000065337736,"teacher_disagreement_score":0.8099067,"about_ca_system_score_codex":0.0017683917,"about_ca_system_score_gemma":0.005287008,"threshold_uncertainty_score":0.99991393},"labels":[],"label_agreement":null},{"id":"W1983686228","doi":"10.1016/s0149-2918(01)80047-3","title":"Effectiveness of levofloxacin for adult community-acquired pneumonia caused by macrolide-resistant Streptococcus pneumoniae: integrated results from four open-label, multicenter, phase III clinical trials","year":2001,"lang":"en","type":"article","venue":"Clinical Therapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre","funders":"American Thoracic Society","keywords":"Levofloxacin; Medicine; Streptococcus pneumoniae; Community-acquired pneumonia; Erythromycin; Pneumonia; Internal medicine; Broth microdilution; Clinical trial; Antimicrobial; Minimum inhibitory concentration; Antibiotics; Microbiology; Biology","score_opus":0.3516822832195693,"score_gpt":0.5214125733915022,"score_spread":0.16973029017193286,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1983686228","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9831002,0.0002095092,0.00278512,0.0018961979,0.001631594,0.0060376585,0.003985787,0.00018346001,0.00017049452],"genre_scores_gemma":[0.9920087,0.001295819,0.0003209391,0.004144285,0.00036249313,0.0003887349,0.0010562068,0.00013034053,0.00029247804],"study_design_codex":"bench_or_experimental","study_design_gemma":"randomized_trial","domain_scores_codex":[0.97982466,0.011950889,0.0061140144,0.0009548249,0.0004530071,0.0007026215],"domain_scores_gemma":[0.960137,0.033368696,0.0020560094,0.0018649469,0.0019325481,0.0006407861],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.017609486,0.0006725029,0.0036774136,0.00015559715,0.00049531646,0.00012584623,0.0009605553,0.0010132489,0.00004053018],"category_scores_gemma":[0.016506834,0.00051878707,0.00094778166,0.00057011034,0.0008671943,0.00018823845,0.0002812038,0.001594239,0.000021424488],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.107908644,0.026992027,0.013074948,0.00022829574,0.0040802252,0.00012435894,0.00022777708,0.0000062215786,0.7818334,0.000044024688,0.0014160696,0.06406402],"study_design_scores_gemma":[0.63882333,0.05450644,0.062229335,0.0042434493,0.007244567,0.000035140514,0.001606006,0.01117958,0.050532654,0.001242921,0.16613734,0.0022192579],"about_ca_topic_score_codex":0.00036658382,"about_ca_topic_score_gemma":0.00016963587,"teacher_disagreement_score":0.7313007,"about_ca_system_score_codex":0.00015366742,"about_ca_system_score_gemma":0.0005399131,"threshold_uncertainty_score":0.99972636},"labels":[],"label_agreement":null},{"id":"W1983776616","doi":"10.1046/j.1365-2567.2001.01158.x","title":"Adjuvant effects of CpG oligodeoxynucleotides on responses against T‐independent type 2 antigens","year":2001,"lang":"en","type":"article","venue":"Immunology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital","funders":"National Research Foundation","keywords":"CpG Oligodeoxynucleotide; Antigen; Antibody; Biology; Adjuvant; Epitope; Toxoid; CpG site; In vivo; Immunology; Molecular biology; Immune system; Immunization; Biochemistry","score_opus":0.014362717481931787,"score_gpt":0.28346563781822637,"score_spread":0.26910292033629457,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1983776616","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99228746,0.00078009587,0.000018362805,0.0006611322,0.0009066589,0.00024110633,0.0000030931742,0.00008334288,0.005018737],"genre_scores_gemma":[0.9967615,0.001108851,0.000015189982,0.00090399367,0.00008424232,0.000014431561,0.0000049632267,0.00002057157,0.0010862405],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99905723,0.00012480332,0.0002380899,0.00019641961,0.0001224231,0.00026102242],"domain_scores_gemma":[0.9991364,0.00022189651,0.00008730594,0.00038854228,0.00010833906,0.000057514175],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009801766,0.0001388717,0.00034093444,0.00025404248,0.00008422958,0.0000040767927,0.00008441732,0.00016116239,0.00009595983],"category_scores_gemma":[0.00036001616,0.000111307614,0.0001014041,0.0002284189,0.00016811023,0.000028949053,0.000038100556,0.00024818652,0.00027717918],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006717761,0.00037968063,0.03526117,0.000041812957,0.00022349124,0.00049185415,0.0001264937,0.000011936395,0.9543679,0.00047117125,0.00025322853,0.007699521],"study_design_scores_gemma":[0.0017808648,0.0030903565,0.74662066,0.00019407898,0.00009006938,0.00039934405,0.00007210633,0.000010164218,0.18200283,0.00007555685,0.06551173,0.00015226591],"about_ca_topic_score_codex":0.000020127622,"about_ca_topic_score_gemma":0.000008795907,"teacher_disagreement_score":0.77236503,"about_ca_system_score_codex":0.00004914098,"about_ca_system_score_gemma":0.00010657587,"threshold_uncertainty_score":0.4538993},"labels":[],"label_agreement":null},{"id":"W1984019148","doi":"10.1016/j.idc.2012.11.013","title":"What Is the Relevance of Antimicrobial Resistance on the Outcome of Community-Acquired Pneumonia Caused by Streptococcus pneumoniae? (Should Macrolide Monotherapy Be Used for Mild Pneumonia?)","year":2013,"lang":"en","type":"review","venue":"Infectious Disease Clinics of North America","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Mount Sinai Hospital; University of Toronto","funders":"","keywords":"Medicine; Streptococcus pneumoniae; Pneumonia; Community-acquired pneumonia; Intensive care medicine; Clinical significance; Antibiotic resistance; Antibiotics; Antimicrobial; Combination therapy; Internal medicine; Microbiology","score_opus":0.08351673640187735,"score_gpt":0.3836411349271107,"score_spread":0.30012439852523337,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984019148","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.37546802,0.58699495,0.00008877963,0.008839457,0.0018423607,0.016859569,0.009551719,0.00026098124,0.00009416972],"genre_scores_gemma":[0.059478335,0.93244344,0.000009479356,0.005344726,0.00015872857,0.0015445773,0.00034908313,0.00026478042,0.00040685257],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99307865,0.0013339604,0.0033558465,0.0007260835,0.0007839254,0.0007215397],"domain_scores_gemma":[0.9841028,0.006798547,0.004546491,0.0033480478,0.0008034954,0.00040064025],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007606999,0.0011319094,0.004064905,0.00035588746,0.0006564053,0.00008259591,0.001168717,0.00045455233,0.000046008412],"category_scores_gemma":[0.0010492275,0.0007134611,0.0028433248,0.0011701704,0.0017644946,0.00021756464,0.00018195958,0.0015134242,0.000019450017],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014966672,0.017820528,0.15409167,0.10141292,0.013887146,0.000056761288,0.003351615,0.00028627872,0.0038088656,0.00012160164,0.039010696,0.66465527],"study_design_scores_gemma":[0.0017582665,0.0013980297,0.0056201816,0.00730025,0.003558559,0.0000050164003,0.00012018154,0.000019707002,0.00010919707,0.000058739606,0.97928315,0.00076869485],"about_ca_topic_score_codex":0.00013907347,"about_ca_topic_score_gemma":0.00024708855,"teacher_disagreement_score":0.94027245,"about_ca_system_score_codex":0.00019161115,"about_ca_system_score_gemma":0.0008526729,"threshold_uncertainty_score":0.9995316},"labels":[],"label_agreement":null},{"id":"W1984748811","doi":"10.1016/j.mayocp.2013.09.015","title":"Risk Stratification for Cardiac Complications in Patients Hospitalized for Community-Acquired Pneumonia","year":2014,"lang":"en","type":"article","venue":"Mayo Clinic Proceedings","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Ottawa Hospital","funders":"","keywords":"Medicine; Risk stratification; Pneumonia; Intensive care medicine; Community-acquired pneumonia; Internal medicine; Emergency medicine","score_opus":0.03183002077687761,"score_gpt":0.32315028253708195,"score_spread":0.2913202617602043,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984748811","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.992082,0.000007138484,0.00091686426,0.0013405356,0.00027537064,0.0027021656,0.00012454986,0.00012876293,0.0024225968],"genre_scores_gemma":[0.99649864,0.000016921525,0.00082438503,0.00058259163,0.00012970933,0.0014548854,0.00021276747,0.000036960944,0.00024313603],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986844,0.000046498917,0.00058228016,0.00027903594,0.0001343991,0.00027337184],"domain_scores_gemma":[0.99839854,0.00035402947,0.00031122388,0.00027725016,0.000538123,0.00012081786],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010098359,0.00016962213,0.0004069416,0.00014973087,0.00045706597,0.000040547093,0.00015085906,0.00016422928,0.0000061097244],"category_scores_gemma":[0.0014723503,0.00016047839,0.0002118794,0.00023538971,0.00009747688,0.00012645165,0.00002799521,0.00023365315,0.000024324612],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017923595,0.0009843969,0.9803496,0.0002831281,0.00007878965,1.768921e-8,0.00075060164,0.000001107935,0.007814595,0.0013837087,0.0024970612,0.005677746],"study_design_scores_gemma":[0.0035007491,0.0014221733,0.95758945,0.00007758309,0.00016573725,4.6226342e-7,0.00020374006,0.00060149,0.00028758642,0.002571057,0.033398166,0.00018179783],"about_ca_topic_score_codex":0.000028877013,"about_ca_topic_score_gemma":0.000005637975,"teacher_disagreement_score":0.030901104,"about_ca_system_score_codex":0.00008763722,"about_ca_system_score_gemma":0.00005185526,"threshold_uncertainty_score":0.65441185},"labels":[],"label_agreement":null},{"id":"W1984811889","doi":"10.1016/j.ijantimicag.2014.12.034","title":"Killing of Streptococcus pneumoniae by azithromycin, clarithromycin, erythromycin, telithromycin and gemifloxacin using drug minimum inhibitory concentrations and mutant prevention concentrations","year":2015,"lang":"en","type":"article","venue":"International Journal of Antimicrobial Agents","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Royal University Hospital; Saskatchewan Health Authority","funders":"Sanofi; Abbott Canada; Abbott Laboratories","keywords":"Telithromycin; Gemifloxacin; Streptococcus pneumoniae; Erythromycin; Clarithromycin; Microbiology; Azithromycin; Ketolide; Minimum inhibitory concentration; Antibacterial agent; Antibiotics; Quinolone; Biology; Pharmacology","score_opus":0.030675501423275197,"score_gpt":0.31347259080471207,"score_spread":0.2827970893814369,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984811889","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944246,0.00040252422,0.0016610275,0.0018077438,0.0010497017,0.00040894677,0.00012631406,0.000018751205,0.00010039935],"genre_scores_gemma":[0.99777,0.0005901012,0.0006994707,0.00046154254,0.00033548335,0.0000027302824,0.000039250684,0.000027238022,0.00007415066],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976443,0.00013515228,0.0011312204,0.00027916662,0.000559287,0.0002508881],"domain_scores_gemma":[0.9973436,0.00007325681,0.00085097615,0.00014564421,0.0012447576,0.00034178045],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004003407,0.00025534368,0.0005254297,0.0002937415,0.00013903719,0.000087805915,0.00015176658,0.00015218774,0.000039051192],"category_scores_gemma":[0.0001214023,0.00023396718,0.0001654972,0.00018516582,0.00036057192,0.0005347386,0.000084614585,0.0003781139,0.0000025596355],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000994707,0.0005465427,0.08052046,0.000050099054,0.00048713636,0.00007833265,0.00085343636,0.0002954369,0.9133926,0.0000634285,0.0031726565,0.00044038484],"study_design_scores_gemma":[0.024812557,0.0022444697,0.073913686,0.0054381117,0.0021648384,0.0076337885,0.0059056366,0.0045068483,0.85258967,0.00047298084,0.018954907,0.0013625136],"about_ca_topic_score_codex":0.00006129547,"about_ca_topic_score_gemma":0.000018287474,"teacher_disagreement_score":0.060802963,"about_ca_system_score_codex":0.00021548799,"about_ca_system_score_gemma":0.00061490096,"threshold_uncertainty_score":0.9540905},"labels":[],"label_agreement":null},{"id":"W1985048539","doi":"10.1371/journal.pone.0001991","title":"Does 3-Day Course of Oral Amoxycillin Benefit Children of Non-Severe Pneumonia with Wheeze: A Multicentric Randomised Controlled Trial","year":2008,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Indian Council of Medical Research; McMaster University","keywords":"Wheeze; Pneumonia; Medicine; Randomized controlled trial; Pediatrics; Amoxicillin; Internal medicine; Antibiotics; Asthma; Biology; Microbiology","score_opus":0.016878167071296635,"score_gpt":0.23351286084422512,"score_spread":0.2166346937729285,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1985048539","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99414843,0.00009223834,0.000022496932,0.0003412022,0.00008987822,0.004868203,0.00005464356,0.000051017654,0.00033190372],"genre_scores_gemma":[0.998268,0.00021204061,0.00021939972,0.00009199216,0.00016725119,0.00022048142,0.000019686746,0.000033247827,0.00076790596],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9981605,0.00009290469,0.00066656154,0.00026468525,0.0005331454,0.00028220486],"domain_scores_gemma":[0.9983525,0.00025506146,0.00041982363,0.00039163893,0.00039628695,0.0001846554],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025122124,0.00024536529,0.0014685252,0.00018637671,0.0001084388,0.0000049952996,0.00010710789,0.00014542697,0.00012024796],"category_scores_gemma":[0.00023834106,0.00012857445,0.0002729475,0.00033003662,0.00023309686,0.00007492895,0.000022077878,0.00024257018,0.0000114843215],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.41915548,0.019054864,0.2929172,0.00022724373,0.0053970865,0.000060259477,0.0007539116,0.0000912928,0.2619603,0.0000072011326,0.0000492108,0.0003259695],"study_design_scores_gemma":[0.831915,0.0022169214,0.13732566,0.0003413777,0.0022386706,0.00003039128,0.000034554112,0.0004048043,0.025268326,0.0000041889725,0.000015429889,0.00020466329],"about_ca_topic_score_codex":0.000065653134,"about_ca_topic_score_gemma":0.0000354585,"teacher_disagreement_score":0.41275954,"about_ca_system_score_codex":0.00003595161,"about_ca_system_score_gemma":0.0002583477,"threshold_uncertainty_score":0.5243114},"labels":[],"label_agreement":null},{"id":"W1985325758","doi":"10.1086/313923","title":"Invasive Pneumococcal Infections in Canadian Children, 1991-1998: Implications for New Vaccination Strategies","year":2000,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; Health Canada; Canadian Paediatric Society","funders":"","keywords":"Medicine; Serotype; Vaccination; Conjugate vaccine; Pneumococcal infections; Penicillin; Streptococcus pneumoniae; Pneumococcal conjugate vaccine; Pediatrics; Meningitis; Immunization; Antibiotics; Virology; Immunology; Microbiology; Biology; Antigen","score_opus":0.031562293829953486,"score_gpt":0.3671163721187966,"score_spread":0.3355540782888431,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1985325758","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98833674,0.00016051679,0.00010913931,0.0035802703,0.00032783273,0.0016259606,0.00021954149,0.00028274607,0.0053572347],"genre_scores_gemma":[0.9956505,0.00058917433,0.000007336285,0.0017220174,0.0007857484,0.0004057955,0.00041731066,0.000038461752,0.00038371127],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9980631,0.000107124564,0.00071481423,0.00049168745,0.0000923403,0.0005309418],"domain_scores_gemma":[0.9976098,0.0006123191,0.00010279165,0.00040356364,0.00012738761,0.0011441509],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001720087,0.0002437943,0.00043583292,0.00041721755,0.0004091216,0.00009408002,0.00010199204,0.0002738849,0.00041188387],"category_scores_gemma":[0.0008589445,0.00023436263,0.00039905432,0.00065552676,0.00010857344,0.00030061073,0.000014878594,0.00036590776,0.00026356443],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015859228,0.0009686631,0.9735523,0.00002612857,0.00012145705,0.0000041181024,0.00002481858,0.00033386974,0.00009673964,0.0010116235,0.0022286912,0.02161576],"study_design_scores_gemma":[0.0021783316,0.00074961723,0.95853394,0.000047718535,0.00027481918,0.000049027487,0.000016418946,0.000043360447,0.0000047475723,0.004981691,0.032885596,0.00023475332],"about_ca_topic_score_codex":0.024198996,"about_ca_topic_score_gemma":0.30896354,"teacher_disagreement_score":0.28476453,"about_ca_system_score_codex":0.00031666,"about_ca_system_score_gemma":0.0026954736,"threshold_uncertainty_score":0.982299},"labels":[],"label_agreement":null},{"id":"W1985576629","doi":"10.7326/0003-4819-154-8-201104190-02013","title":"Review: CURB65, CRB65, and Pneumonia Severity Index similarly predict mortality in community-acquired pneumonia","year":2011,"lang":"en","type":"letter","venue":"Annals of Internal Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Medicine; Pneumonia; Pneumonia severity index; Community-acquired pneumonia; Intensive care medicine; Thorax (insect anatomy); Internal medicine; Emergency medicine","score_opus":0.08672530643675803,"score_gpt":0.3622310564973017,"score_spread":0.2755057500605437,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1985576629","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.32501414,0.03751696,0.000042033647,0.6206984,0.0016735636,0.0022628228,0.00031569658,0.00020532774,0.012271053],"genre_scores_gemma":[0.20215528,0.037831225,0.000007652737,0.7569426,0.0017819096,0.000104088045,0.0001894961,0.00011168722,0.00087608676],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9947385,0.00093267823,0.0020203497,0.0006450531,0.0009195406,0.0007438536],"domain_scores_gemma":[0.9960142,0.00035631584,0.0010426099,0.0014798121,0.00071998383,0.0003870826],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0019426127,0.000838506,0.0026748031,0.000795896,0.00014057521,0.000015699967,0.0006507124,0.0010325987,0.00041828837],"category_scores_gemma":[0.0012868348,0.00065187283,0.0003857326,0.00051538047,0.0012568946,0.0002291291,0.00032358058,0.0048795906,0.00001916918],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017871601,0.000477933,0.22251998,0.01331503,0.0007099827,0.0017004651,0.0008187027,2.613994e-7,0.0037958478,0.0000059092927,0.7543033,0.0021739223],"study_design_scores_gemma":[0.001380768,0.0022688233,0.39267853,0.04218121,0.0006195084,0.0008119017,0.000087032015,0.000025275194,0.00015807341,0.00034544515,0.5589515,0.00049193465],"about_ca_topic_score_codex":0.005889169,"about_ca_topic_score_gemma":0.00034738143,"teacher_disagreement_score":0.19535175,"about_ca_system_score_codex":0.000081533595,"about_ca_system_score_gemma":0.0002302613,"threshold_uncertainty_score":0.99959326},"labels":[],"label_agreement":null},{"id":"W1985981127","doi":"10.1093/jac/dkn532","title":"In vitro activity of the investigational ketolide cethromycin against macrolide- and penicillin-resistant Streptococcus pneumoniae: review of the 1998 to 2006 Canadian Respiratory Organism Susceptibility Study (CROSS)","year":2009,"lang":"en","type":"letter","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Sciences Centre; University of Manitoba","funders":"Bundesministerium für Bildung und Forschung","keywords":"Ketolide; Streptococcus pneumoniae; Telithromycin; Microbiology; Penicillin; Antibacterial agent; Medicine; In vitro; Biology; Antibiotics","score_opus":0.014810553183286182,"score_gpt":0.2847215500275292,"score_spread":0.269910996844243,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1985981127","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7448027,0.00029689938,6.862335e-7,0.2528139,0.00031404046,0.0014913811,0.00022590201,0.0000041541534,0.0000503339],"genre_scores_gemma":[0.47789824,0.0004932563,0.000028220371,0.52074885,0.00066363276,0.000005555072,0.0000045600264,0.00005106867,0.00010658972],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9963277,0.00062343176,0.0015392298,0.00038964025,0.0007005412,0.00041943166],"domain_scores_gemma":[0.9966035,0.00013427358,0.0015644009,0.0008072922,0.0006700917,0.00022045009],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0012171031,0.00044616457,0.0014050056,0.00038250923,0.00019010836,0.00003525215,0.0005556011,0.0004587088,0.00003606751],"category_scores_gemma":[0.0003654042,0.0002773805,0.00054751406,0.00076684507,0.00045456004,0.000117436015,0.0000680437,0.0022824889,0.0000015388617],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013451447,0.0003239753,0.029171655,0.0011315111,0.00016904931,0.00009819463,0.0002426297,0.000008143107,0.8489333,3.0453592e-7,0.11952731,0.00025943355],"study_design_scores_gemma":[0.0037822605,0.0009758282,0.39204845,0.009110696,0.00039425355,0.00020020503,0.000036531375,0.0000010993837,0.3557529,0.000033008764,0.23714866,0.00051614403],"about_ca_topic_score_codex":0.0020497341,"about_ca_topic_score_gemma":0.0066301264,"teacher_disagreement_score":0.4931804,"about_ca_system_score_codex":0.00061643164,"about_ca_system_score_gemma":0.0032714882,"threshold_uncertainty_score":0.9999678},"labels":[],"label_agreement":null},{"id":"W1986609969","doi":"10.1097/qco.0b013e32835023fb","title":"Is healthcare-associated pneumonia a distinct entity needing specific therapy?","year":2012,"lang":"en","type":"review","venue":"Current Opinion in Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumonia; Guideline; Confounding; Intensive care medicine; Incidence (geometry); Antimicrobial; Observational study; Internal medicine; Microbiology; Biology; Pathology","score_opus":0.18844002824800635,"score_gpt":0.4244872518786865,"score_spread":0.23604722363068018,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1986609969","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00047118613,0.98050666,0.000009345712,0.00009608918,0.015731571,0.0019447276,0.00055496336,0.00040182064,0.00028366296],"genre_scores_gemma":[0.0062317993,0.9893927,3.9817658e-7,0.000061203194,0.0024852585,0.00070061063,0.00096186495,0.00012482541,0.00004136829],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9962293,0.00045442212,0.0011819036,0.0007758091,0.0005182602,0.0008402869],"domain_scores_gemma":[0.9975624,0.00025692643,0.00068854913,0.00063950836,0.00018295507,0.00066964695],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00026982612,0.0008277056,0.0021403497,0.0012817857,0.00035492124,0.00010824687,0.00019869948,0.00046461393,0.00048489025],"category_scores_gemma":[0.00016340046,0.0006898374,0.0012915735,0.0018317028,0.000153883,0.00020035316,0.00011828494,0.0012513105,0.00040367412],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010336741,0.002831309,0.17288217,0.019885212,0.0002859648,0.0000054073516,0.00012529816,1.83923e-7,7.79024e-7,0.00014238506,0.0040099453,0.799821],"study_design_scores_gemma":[0.0009249803,0.00020291425,0.030016566,0.020327764,0.0003946857,0.00006652512,0.000010452064,0.0000015979037,8.693686e-8,0.000060519862,0.9474152,0.00057873013],"about_ca_topic_score_codex":0.0000421664,"about_ca_topic_score_gemma":0.0000091970505,"teacher_disagreement_score":0.9434052,"about_ca_system_score_codex":0.0011941415,"about_ca_system_score_gemma":0.00072427304,"threshold_uncertainty_score":0.9995553},"labels":[],"label_agreement":null},{"id":"W1986713641","doi":"10.1097/inf.0b013e31829ba62a","title":"Elevated Inflammatory Markers Combined With Positive Pneumococcal Urinary Antigen Are a Good Predictor of Pneumococcal Community-acquired Pneumonia in Children","year":2013,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"","keywords":"Medicine; Procalcitonin; Streptococcus pneumoniae; Pneumococcal pneumonia; Internal medicine; Community-acquired pneumonia; Gastroenterology; Pneumonia; C-reactive protein; Odds ratio; Immunology; Confidence interval; Sepsis; Biology; Microbiology; Inflammation","score_opus":0.005320455713216019,"score_gpt":0.21484925704771932,"score_spread":0.2095288013345033,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1986713641","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99636537,0.00016972215,0.000014774355,0.000688962,0.00021128244,0.0019730171,0.000064819775,0.00014573938,0.00036630864],"genre_scores_gemma":[0.99861044,0.00034029695,0.0000057027773,0.00023385974,0.0005450244,0.00010949452,0.000025744544,0.00007569352,0.000053760956],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99638146,0.0011419263,0.00090834004,0.00028126364,0.000606081,0.00068092707],"domain_scores_gemma":[0.9969685,0.00034603805,0.00074614683,0.00064169645,0.00052750116,0.0007701262],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006755798,0.00047627112,0.0006881899,0.00073612115,0.000829784,0.00009101974,0.0003512729,0.00019235085,0.0001587742],"category_scores_gemma":[0.00025161647,0.00031899664,0.00032795867,0.0010395995,0.00037688442,0.00038243795,0.00015424102,0.0016013705,0.00004619432],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008522318,0.0022013988,0.9880957,0.00011578648,0.0004327542,0.0001881238,0.00035234622,0.00019896076,0.0074128467,0.000008522233,0.00007720936,0.00006414624],"study_design_scores_gemma":[0.0047171563,0.0025636186,0.98754936,0.00018450439,0.00072164094,0.0031545367,0.0003093759,0.0001975278,0.00004462943,0.00020365481,0.000013545713,0.00034046322],"about_ca_topic_score_codex":0.00016919895,"about_ca_topic_score_gemma":0.000018172666,"teacher_disagreement_score":0.007368217,"about_ca_system_score_codex":0.0002861868,"about_ca_system_score_gemma":0.00079072523,"threshold_uncertainty_score":0.9999262},"labels":[],"label_agreement":null},{"id":"W1987184005","doi":"10.1016/j.diagmicrobio.2008.12.015","title":"Canadian β-lactamase–negative Haemophilus influenzae isolates showing decreased susceptibility toward ampicillin have significant penicillin binding protein 3 mutations","year":2009,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada","funders":"Health Canada","keywords":"Ampicillin; Haemophilus influenzae; Microbiology; Clavulanic acid; Amp resistance; Penicillin; Biology; Beta-lactamase; Amoxicillin; Haemophilus; Penicillin binding proteins; Pasteurellaceae; Virology; Antibiotics; Gene; Bacteria; Genetics; Escherichia coli","score_opus":0.015116242315072102,"score_gpt":0.25736517139868414,"score_spread":0.24224892908361204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987184005","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99337715,0.000222577,0.00010914923,0.003518973,0.00015073032,0.001616379,0.0004483551,0.00016264548,0.0003940348],"genre_scores_gemma":[0.99557674,0.000058898837,0.000033038672,0.0036096082,0.000116721254,0.00013077586,0.000360801,0.000024636578,0.000088775756],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99790955,0.00024737208,0.00048072034,0.00065014604,0.0000657633,0.0006464768],"domain_scores_gemma":[0.9972223,0.0009270134,0.00013395099,0.00033857537,0.00023321822,0.0011449284],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00025330245,0.00038304005,0.00047886046,0.00044801523,0.0006771507,0.00006107005,0.00008802493,0.00028308676,0.0002460553],"category_scores_gemma":[0.005118069,0.00034377232,0.00019385388,0.00029645473,0.00037076027,0.00015284219,0.000027227275,0.0004867162,0.00007701926],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019575773,0.0007816456,0.6428937,0.0001263281,0.00021838729,0.00048019702,0.00072014367,0.00012691367,0.35253066,0.00032864945,0.00038239305,0.001215223],"study_design_scores_gemma":[0.008715794,0.003930867,0.9327001,0.0010864,0.0018624641,0.0006282066,0.0010288099,0.0005708485,0.03536317,0.0048687845,0.007132617,0.002111942],"about_ca_topic_score_codex":0.005725444,"about_ca_topic_score_gemma":0.009780064,"teacher_disagreement_score":0.3171675,"about_ca_system_score_codex":0.00040799935,"about_ca_system_score_gemma":0.0010093515,"threshold_uncertainty_score":0.9999014},"labels":[],"label_agreement":null},{"id":"W1987509221","doi":"10.3810/pgm.2009.03.1996","title":"TRUST Surveillance Initiative: Antimicrobial Resistance among Common Bacterial Respiratory Tract Pathogens","year":2009,"lang":"en","type":"letter","venue":"Postgraduate Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Medicine; Antimicrobial; Antibiotic resistance; Respiratory tract infections; Respiratory tract; Intensive care medicine; Respiratory system; Microbiology; Drug resistance; Antibiotics; Internal medicine; Biology","score_opus":0.0346140083761575,"score_gpt":0.2866147268142947,"score_spread":0.25200071843813715,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987509221","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.21258697,0.00066868984,0.000017068674,0.76756376,0.0033848775,0.0016143376,0.0006804815,0.0005036802,0.012980157],"genre_scores_gemma":[0.17738126,0.00045671067,0.0000346932,0.7916506,0.023433087,0.00007225588,0.0029083225,0.00027090072,0.0037921655],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9942674,0.000773307,0.0015353956,0.0012066825,0.0010595219,0.0011577167],"domain_scores_gemma":[0.99638885,0.00039928238,0.0009324579,0.0013752234,0.000509592,0.00039460458],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.00081895664,0.0011361694,0.0024045997,0.0007964573,0.0004239045,0.00005807636,0.00042405186,0.0014796992,0.00038200748],"category_scores_gemma":[0.00058055524,0.000913563,0.00048705333,0.0007806911,0.0011350823,0.00017752728,0.00006735414,0.0041630003,0.00014473656],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024081171,0.00022155863,0.032431062,0.00062805583,0.0002203072,0.0063263923,0.0002036779,4.7448393e-7,0.036955696,0.0000053256485,0.92210656,0.00066009833],"study_design_scores_gemma":[0.0033311066,0.00096485333,0.26759154,0.001696681,0.00044911526,0.00032091825,0.000015700309,0.0000022859151,0.00040148073,0.00005625717,0.7244568,0.00071330025],"about_ca_topic_score_codex":0.00008336132,"about_ca_topic_score_gemma":0.0001712557,"teacher_disagreement_score":0.23516047,"about_ca_system_score_codex":0.00038255958,"about_ca_system_score_gemma":0.0004946265,"threshold_uncertainty_score":0.9998166},"labels":[],"label_agreement":null},{"id":"W1988798435","doi":"10.1055/s-0029-1202938","title":"<i>Streptococcus pneumoniae</i>: Epidemiology, Risk Factors, and Strategies for Prevention","year":2009,"lang":"en","type":"review","venue":"Seminars in Respiratory and Critical Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":260,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Medicine; Streptococcus pneumoniae; Herd immunity; Epidemiology; Case fatality rate; Meningitis; Pneumonia; Population; Immunology; Serotype; Conjugate vaccine; Bacteremia; Incidence (geometry); Pneumococcal infections; Disease; Vaccination; Pediatrics; Intensive care medicine; Immune system; Internal medicine; Immunization; Environmental health; Antibiotics; Microbiology; Biology","score_opus":0.0962602100165888,"score_gpt":0.43792966131833894,"score_spread":0.34166945130175014,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1988798435","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0027181096,0.99358094,0.00011113024,0.00031886867,0.00033607814,0.0020059485,0.0001357516,0.00008365587,0.00070950727],"genre_scores_gemma":[0.0040285746,0.9939028,0.00005430713,0.0007276236,0.00061306515,0.00043511114,0.00012779816,0.00006015224,0.00005056662],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9960675,0.00077547244,0.0013491113,0.0009583283,0.00021497971,0.00063460565],"domain_scores_gemma":[0.9952357,0.0033293138,0.000288818,0.00046454754,0.00018300055,0.0004986101],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0011377783,0.00074205856,0.0031967699,0.0004929537,0.00028336307,0.000023276445,0.00012257659,0.0009868034,0.000029481062],"category_scores_gemma":[0.00411666,0.0004995514,0.0003821628,0.00032778984,0.0011760495,0.00013107149,0.00006316449,0.001286471,0.0000020435302],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002641068,0.0001313979,0.013674176,0.031804476,0.00009498416,0.000107647116,0.00038387696,2.8973568e-7,0.000030436851,0.0026237036,0.00058505754,0.95053756],"study_design_scores_gemma":[0.0010010839,0.0050429194,0.002412546,0.030914538,0.0028077585,0.00011507993,0.0025941785,0.0000024065696,0.0000022053177,0.00242689,0.9521999,0.00048050232],"about_ca_topic_score_codex":0.000014047785,"about_ca_topic_score_gemma":0.00003255684,"teacher_disagreement_score":0.95161486,"about_ca_system_score_codex":0.00013888934,"about_ca_system_score_gemma":0.0003780844,"threshold_uncertainty_score":0.9997456},"labels":[],"label_agreement":null},{"id":"W1988827066","doi":"10.1016/j.amjmed.2003.11.013","title":"Efficacy of exclusively oral antibiotic therapy in patients hospitalized with nonsevere community-acquired pneumonia: a retrospective study and meta-analysis","year":2004,"lang":"en","type":"review","venue":"The American Journal of Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network; Mount Sinai Hospital","funders":"","keywords":"Medicine; Pneumonia; Retrospective cohort study; Internal medicine; Antibiotics; Community-acquired pneumonia; Cohort study; Prospective cohort study; Surgery","score_opus":0.06416449255022588,"score_gpt":0.3677515272124316,"score_spread":0.3035870346622057,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1988827066","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.65844595,0.33900264,0.000009118982,0.00072056043,0.00004715535,0.0017146177,0.000018618983,0.000009649452,0.000031675085],"genre_scores_gemma":[0.6151381,0.38455716,0.000021705011,0.00018297994,0.000037934406,0.000007876862,0.0000056739427,0.000036584708,0.000011978119],"study_design_codex":"meta_analysis","study_design_gemma":"observational","domain_scores_codex":[0.9950447,0.002132017,0.0014760377,0.00024040813,0.0008519774,0.00025487458],"domain_scores_gemma":[0.99476916,0.00039824026,0.0033668976,0.0007245003,0.00055020273,0.00019101423],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017578709,0.0005347178,0.009186162,0.0011558157,0.00015811619,0.000010183936,0.00039555936,0.00007496262,0.00003359296],"category_scores_gemma":[0.00029154753,0.00022396861,0.0010906599,0.0030144402,0.0016788036,0.000061494946,0.000073453186,0.0011861022,7.0620746e-7],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0040550423,0.01149441,0.17484939,0.0023130672,0.64964545,0.000649168,0.013515157,0.000035861125,0.000026013207,0.0000063715265,0.000023152654,0.1433869],"study_design_scores_gemma":[0.008948105,0.03821784,0.55790704,0.0017896694,0.3907966,0.00030487144,0.001078124,3.273761e-7,3.546756e-7,0.0000068701584,0.0007395206,0.00021065367],"about_ca_topic_score_codex":0.00055408844,"about_ca_topic_score_gemma":0.000030720297,"teacher_disagreement_score":0.38305768,"about_ca_system_score_codex":0.00023543362,"about_ca_system_score_gemma":0.0004148667,"threshold_uncertainty_score":0.9133175},"labels":[],"label_agreement":null},{"id":"W1988834350","doi":"10.1186/1476-0711-8-10","title":"Verification of the ProPneumo-1 assay for the simultaneous detection of Mycoplasma pneumoniae and Chlamydophila pneumoniae in clinical respiratory specimens","year":2009,"lang":"en","type":"article","venue":"Annals of Clinical Microbiology and Antimicrobials","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; University of Toronto; Ministry of Health and Long Term Care","funders":"","keywords":"Mycoplasma pneumoniae; Chlamydophila pneumoniae; Microbiology; Multiplex polymerase chain reaction; Multiplex; Biology; Virology; Mollicutes; Chlamydiaceae; Chlamydia; Pneumonia; Medicine; Polymerase chain reaction; Mycoplasma; Immunology; Internal medicine; Gene; Bioinformatics","score_opus":0.08623391213831946,"score_gpt":0.3986343429487775,"score_spread":0.312400430810458,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1988834350","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99188584,0.00047098787,0.00004380099,0.0060515855,0.00037921243,0.0010143823,0.00009727854,0.000012646777,0.00004424927],"genre_scores_gemma":[0.9956909,0.0015387968,0.000032433858,0.0025102391,0.00014703031,0.000008555664,0.000005276163,0.00001308621,0.00005369958],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99645144,0.00066918257,0.002138064,0.00042072273,0.000058248374,0.00026235258],"domain_scores_gemma":[0.9946281,0.0034453236,0.0010468914,0.0004569675,0.0003468841,0.00007583443],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003395747,0.00020488963,0.0010304876,0.00011500187,0.00013399491,0.000006522522,0.00017834178,0.00051943737,0.000005601158],"category_scores_gemma":[0.0032147034,0.00012354934,0.0004080894,0.00023385031,0.0012847544,0.000046620986,0.00006162395,0.0004788822,0.0000016485054],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042996273,0.00055740774,0.052586775,0.000101106,0.00010907458,0.0000020411733,0.00005216834,0.000020775004,0.9349048,0.000092071365,0.00011737115,0.0110264495],"study_design_scores_gemma":[0.0030914743,0.004027572,0.51697963,0.000476691,0.00031456247,0.00024234252,0.000054267188,0.00013255917,0.45127246,0.00028631496,0.02285694,0.0002651789],"about_ca_topic_score_codex":0.0000053665904,"about_ca_topic_score_gemma":0.000027643182,"teacher_disagreement_score":0.48363233,"about_ca_system_score_codex":0.0000054763264,"about_ca_system_score_gemma":0.00015081781,"threshold_uncertainty_score":0.5038196},"labels":[],"label_agreement":null},{"id":"W1989225449","doi":"10.1021/pr9006427","title":"Pneumococcal Pneumonia: Potential for Diagnosis through a Urinary Metabolic Profile","year":2009,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":98,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University of Alberta; Mount Sinai Hospital","funders":"","keywords":"Pneumonia; Streptococcus pneumoniae; Community-acquired pneumonia; Urinary system; Microbiology; Urine; Pathogen; Antimicrobial; Bacterial pneumonia; Pneumococcal pneumonia; Pathogenic bacteria; Respiratory tract; Metabolomics; Respiratory tract infections; Biology; Immunology; Bacteria; Medicine; Respiratory system; Internal medicine; Antibiotics; Bioinformatics","score_opus":0.08318439568936047,"score_gpt":0.4251161093894762,"score_spread":0.3419317137001157,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989225449","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9676716,0.0014286662,0.001443706,0.02456849,0.00032429388,0.0027808032,0.000018743396,0.000038593684,0.0017251034],"genre_scores_gemma":[0.9934266,0.00067571795,0.0026247515,0.00026193762,0.0017772835,0.00035763817,0.0000027495435,0.000032147957,0.0008411576],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99712664,0.0002595536,0.00064706383,0.00024072459,0.001061569,0.0006644729],"domain_scores_gemma":[0.9975714,0.00017286163,0.00021519832,0.00029117434,0.0014000299,0.00034931258],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018254697,0.00017724276,0.0005658646,0.0006048897,0.00038981996,0.00006989146,0.0002502522,0.00019001319,0.00014752439],"category_scores_gemma":[0.00060682715,0.00012720619,0.0004737274,0.00070661196,0.0001570776,0.00034254242,0.00005320898,0.001242437,0.000049890772],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00084954017,0.0026147214,0.0041774283,0.0002101977,0.000252609,0.00093319046,0.00028155485,0.00001528303,0.97708833,0.00052946014,0.0024687832,0.010578917],"study_design_scores_gemma":[0.010813312,0.043353632,0.4109319,0.001049933,0.00062859885,0.014154397,0.0007437495,0.000339159,0.12393037,0.012553258,0.38083354,0.0006681691],"about_ca_topic_score_codex":0.000004674165,"about_ca_topic_score_gemma":5.245396e-7,"teacher_disagreement_score":0.85315794,"about_ca_system_score_codex":0.0001362202,"about_ca_system_score_gemma":0.00069724454,"threshold_uncertainty_score":0.53978395},"labels":[],"label_agreement":null},{"id":"W1989498476","doi":"10.1016/s0264-410x(03)00361-x","title":"Benefits and costs of immunization of children with pneumococcal conjugate vaccine in Canada","year":2003,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":54,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Santé Montérégie; Université de Sherbrooke; Health Canada; Université Laval","funders":"","keywords":"Vaccination; Pneumococcal conjugate vaccine; Immunization; Medicine; Cost–benefit analysis; Environmental health; Pneumococcal infections; Cost effectiveness; Conjugate vaccine; Incidence (geometry); Immunology; Streptococcus pneumoniae; Biology; Risk analysis (engineering)","score_opus":0.005912364739698913,"score_gpt":0.2080445508948458,"score_spread":0.2021321861551469,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989498476","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99878335,0.00041976952,0.000008543,0.00022558686,0.000030849056,0.00027011437,0.000013152505,0.0000065572117,0.0002420902],"genre_scores_gemma":[0.99965626,0.00017930064,0.000023296798,0.000086622,0.000009543613,0.000004957179,0.000014153418,0.0000117059335,0.000014174633],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993716,0.00003241534,0.00026049282,0.00011545875,0.000100790356,0.00011927598],"domain_scores_gemma":[0.99953234,0.000030583633,0.00009848552,0.00016618113,0.00010431214,0.00006811558],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000073950316,0.00009538557,0.0002815724,0.00011570806,0.000022649601,0.0000015686603,0.00002891289,0.000035879144,0.000037537906],"category_scores_gemma":[0.00005185185,0.00007160018,0.000013773263,0.00032993793,0.0000056279027,0.000036284582,0.000010830269,0.00009488558,3.960718e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005614852,0.000069451184,0.9675266,0.000022691305,0.00004485028,0.0000031745903,0.00002413449,0.00025026296,0.030792153,0.0002475278,0.000016484051,0.00094653585],"study_design_scores_gemma":[0.0029768038,0.00031032233,0.9739471,0.00015964755,0.000050334675,0.000118157855,0.000038665272,0.000030571293,0.02220601,0.0000028167549,0.00009096552,0.00006857524],"about_ca_topic_score_codex":0.1319609,"about_ca_topic_score_gemma":0.4461556,"teacher_disagreement_score":0.3141947,"about_ca_system_score_codex":0.00007910292,"about_ca_system_score_gemma":0.00036642584,"threshold_uncertainty_score":0.8738195},"labels":[],"label_agreement":null},{"id":"W1989668781","doi":"10.1016/j.ijantimicag.2009.05.008","title":"Annual macrolide prescription rates and the emergence of macrolide resistance among Streptococcus pneumoniae in Canada from 1995 to 2005","year":2009,"lang":"en","type":"article","venue":"International Journal of Antimicrobial Agents","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Mount Sinai Hospital; University of Manitoba","funders":"Health Canada; Merck Canada; Abbott Laboratories","keywords":"Azithromycin; Clarithromycin; Medical prescription; Erythromycin; Medicine; Macrolide Antibiotics; Streptococcus pneumoniae; Internal medicine; Antibiotics; Pharmacology; Microbiology; Biology; Helicobacter pylori","score_opus":0.006681509982207301,"score_gpt":0.2603318958678627,"score_spread":0.2536503858856554,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989668781","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9906838,0.0000671129,0.000051702245,0.007950593,0.00069275236,0.00020983275,0.00022177838,0.0000030256967,0.00011943267],"genre_scores_gemma":[0.9974042,0.00020906719,0.00006614765,0.0019318582,0.00021177897,0.0000018093073,0.0000060124835,0.0000067066594,0.00016242308],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986249,0.00007226012,0.00063649757,0.00013301263,0.0003701586,0.00016317866],"domain_scores_gemma":[0.99904233,0.000052593554,0.000356712,0.00010120237,0.00033258554,0.00011458605],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019777103,0.000118275,0.00027910672,0.00016632724,0.00004047096,0.000018417772,0.00023027768,0.000039314582,0.00007224569],"category_scores_gemma":[0.00011532509,0.00008562368,0.00008609859,0.00011729131,0.00007089942,0.00016356641,0.000036938683,0.00022156435,0.000001821824],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014493553,0.00022261353,0.639027,0.000014976085,0.0002948423,0.0005010136,0.0009190829,0.0012265934,0.3206976,0.000031245843,0.0339365,0.0016791639],"study_design_scores_gemma":[0.0022697311,0.000059420512,0.9792173,0.00040212713,0.000041768813,0.000059324913,0.0001882331,0.000079076475,0.0134875905,0.000081454375,0.0040252437,0.00008872844],"about_ca_topic_score_codex":0.05880876,"about_ca_topic_score_gemma":0.25476682,"teacher_disagreement_score":0.3401903,"about_ca_system_score_codex":0.00017045543,"about_ca_system_score_gemma":0.0003611058,"threshold_uncertainty_score":0.94745874},"labels":[],"label_agreement":null},{"id":"W1989915425","doi":"10.1016/s0924-8579(01)00334-x","title":"Susceptibility of Canadian isolates of Haemophilus influenzae, Moraxella catarrhalis and Streptococcus pneumoniae to oral antimicrobial agents","year":2001,"lang":"en","type":"article","venue":"International Journal of Antimicrobial Agents","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Royal University Hospital; St. Paul's Hospital; Bayer (Canada); University of Saskatchewan","funders":"","keywords":"Moraxella catarrhalis; Microbiology; Haemophilus influenzae; Trovafloxacin; Streptococcus pneumoniae; Gemifloxacin; Gatifloxacin; Levofloxacin; Moxifloxacin; Moraxella (Branhamella) catarrhalis; Cefuroxime; Ciprofloxacin; Penicillin; Minimum inhibitory concentration; Clavulanic acid; Antibacterial agent; Amoxicillin; Antimicrobial; Medicine; Biology; Antibiotics","score_opus":0.030455310592100816,"score_gpt":0.30724829504379736,"score_spread":0.27679298445169653,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989915425","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99407667,0.000014817481,0.000026073223,0.00399665,0.0009366916,0.00029242932,0.0002723832,0.000007818816,0.00037645418],"genre_scores_gemma":[0.9972262,0.00021298439,0.00015045666,0.002033914,0.00023155216,9.871758e-7,0.000022127542,0.00002163368,0.00010017952],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9980926,0.00006504969,0.0009810028,0.00022702466,0.00034878295,0.00028555206],"domain_scores_gemma":[0.99763507,0.00003439541,0.0005230656,0.00019928625,0.0011783633,0.00042985243],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028587354,0.00021528151,0.0005318298,0.0013295519,0.00007385209,0.000037381094,0.00033305003,0.000137065,0.0001899142],"category_scores_gemma":[0.00016478592,0.00019376577,0.00025106058,0.0004445873,0.00017463826,0.00020852925,0.00008373971,0.00026623125,0.000013222914],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025064318,0.00035663956,0.5653647,0.000046210596,0.0004012186,0.00031628247,0.00039659694,0.00028759366,0.4249334,0.000008647627,0.0066616707,0.0009763725],"study_design_scores_gemma":[0.003425427,0.0007651597,0.87596,0.00077739224,0.0002560238,0.0018760118,0.00009863286,0.0000664269,0.07861927,0.000026919544,0.03781914,0.0003096188],"about_ca_topic_score_codex":0.012547709,"about_ca_topic_score_gemma":0.013398739,"teacher_disagreement_score":0.34631413,"about_ca_system_score_codex":0.00017377177,"about_ca_system_score_gemma":0.00044206178,"threshold_uncertainty_score":0.9940278},"labels":[],"label_agreement":null},{"id":"W1990187771","doi":"10.1016/s0732-8893(00)00115-2","title":"Respiratory tract pathogens isolated from patients hospitalized with suspected pneumonia: frequency of occurrence and antimicrobial susceptibility patterns from the SENTRY Antimicrobial Surveillance Program (United States and Canada, 1997)","year":2000,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Emory University","keywords":"Antimicrobial; Meropenem; Microbiology; Cefepime; Broth microdilution; Cephalosporin; Haemophilus influenzae; Medicine; Streptococcus pneumoniae; Klebsiella pneumoniae; Imipenem; Moraxella catarrhalis; Amikacin; Staphylococcus aureus; Antibiotics; Antibiotic resistance; Biology; Minimum inhibitory concentration; Bacteria","score_opus":0.004169558213744417,"score_gpt":0.20973158011399273,"score_spread":0.2055620219002483,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990187771","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98013484,0.000266799,0.0000063709226,0.00036169784,0.00015139746,0.0010761027,0.017911924,0.00008524948,0.0000055976548],"genre_scores_gemma":[0.9932914,0.0009270218,0.000007171056,0.001477415,0.00005169709,0.00003538267,0.0041866763,0.00002113046,0.0000021384278],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99809754,0.00036760187,0.0004383165,0.0006346833,0.00007789802,0.00038397763],"domain_scores_gemma":[0.99819916,0.0007468672,0.00019572914,0.00035113635,0.00020857979,0.00029852873],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00009643986,0.00036656746,0.0005214908,0.00008060374,0.00033250218,0.00003895732,0.00008301768,0.00017758715,0.0001229944],"category_scores_gemma":[0.00030956196,0.00026256623,0.00006168466,0.00021328502,0.00072795065,0.000084122286,0.000047550333,0.00035289038,0.0000017182106],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025753726,0.00092228554,0.97708374,0.0000790224,0.00019409908,0.00009352294,0.00017121802,0.0000050327035,0.019997397,0.0000010893039,0.00050685316,0.0006881762],"study_design_scores_gemma":[0.0031798743,0.0006700163,0.9944194,0.0001954684,0.0003143951,0.000040021583,0.000022783735,0.000022624683,0.00029553592,0.000016688267,0.00051408174,0.00030910707],"about_ca_topic_score_codex":0.11415987,"about_ca_topic_score_gemma":0.09153099,"teacher_disagreement_score":0.02262888,"about_ca_system_score_codex":0.000056577424,"about_ca_system_score_gemma":0.00031675168,"threshold_uncertainty_score":0.99998266},"labels":[],"label_agreement":null},{"id":"W1990272409","doi":"10.1378/chest.127.4.1260","title":"Factors Influencing In-hospital Mortality in Community-Acquired Pneumonia<sup>*</sup>","year":2005,"lang":"en","type":"article","venue":"CHEST Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":187,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta Hospital; University of Alberta","funders":"Pfizer Canada; Bayer Canada; Fondation pour la Recherche Médicale; Pfizer; Abbott Canada; Bristol-Myers Squibb","keywords":"Medicine; Pneumonia; Chest radiograph; Pneumonia severity index; Community-acquired pneumonia; Observational study; Multivariate analysis; Internal medicine; Pediatrics; Intensive care medicine; Lung","score_opus":0.039736075353174666,"score_gpt":0.30804357369750845,"score_spread":0.26830749834433376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990272409","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99706614,0.000088400055,0.000011582521,0.0012277714,0.00016391202,0.00016383865,0.0000033503843,0.00004305566,0.0012319367],"genre_scores_gemma":[0.9989765,0.000053647742,0.00003744601,0.00050395867,0.00033784274,0.000006994417,0.0000044948574,0.000025106168,0.000053964115],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99831384,0.00022125439,0.00061666954,0.00014367203,0.00027541857,0.00042915542],"domain_scores_gemma":[0.9990693,0.000096046795,0.00014490864,0.00031600712,0.000081001206,0.00029275552],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006512019,0.00021908632,0.0004053087,0.00038027499,0.00029585848,0.000058193087,0.00017808659,0.00016955502,0.000108736975],"category_scores_gemma":[0.000250513,0.00017873343,0.00015582556,0.0004038442,0.00012178378,0.00037745346,0.00005795154,0.0014885189,0.00003365663],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009139054,0.00067639875,0.9778272,0.000047919173,0.00003839532,0.00012256623,0.008362702,0.0010121681,0.010931883,0.000007744987,0.00003745314,0.00092644384],"study_design_scores_gemma":[0.0012598834,0.00027025677,0.98692447,0.00021454909,0.000034546807,0.00020771463,0.0039339643,0.0002976827,0.00094568747,0.000056030032,0.0056699603,0.0001852766],"about_ca_topic_score_codex":0.000138929,"about_ca_topic_score_gemma":0.0002496358,"teacher_disagreement_score":0.009986196,"about_ca_system_score_codex":0.0005211017,"about_ca_system_score_gemma":0.00023377998,"threshold_uncertainty_score":0.72885376},"labels":[],"label_agreement":null},{"id":"W1990983445","doi":"10.1055/s-2002-35556","title":"A New Series: “Update: Pathogens Involved in Respiratory Infections”","year":2002,"lang":"en","type":"editorial","venue":"Pneumologie","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Gynecology; Medicine; Lung disease; Internal medicine; Lung","score_opus":0.031480066822979505,"score_gpt":0.2974424739556234,"score_spread":0.2659624071326439,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990983445","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.007848762,0.0018326865,0.000063913154,0.0019286022,0.9791391,0.0012301388,0.00024330738,0.0009120935,0.0068014185],"genre_scores_gemma":[0.00286158,0.0038018164,0.00013088997,0.0017802307,0.98064524,0.0004454785,0.0004627439,0.00027186677,0.009600138],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99639773,0.00025533544,0.00090246944,0.0009467516,0.0006979907,0.00079974567],"domain_scores_gemma":[0.9973664,0.0005223837,0.0003072354,0.0010700146,0.00029791394,0.0004360525],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0004350311,0.00067622523,0.0011431101,0.0009448845,0.00019020669,0.00006613337,0.00030253918,0.0023313456,0.0006522014],"category_scores_gemma":[0.0033095714,0.0006176995,0.00039156954,0.0010004375,0.00017689826,0.00020845619,0.00018696004,0.0027541064,0.0009622538],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004325344,0.0003360177,0.009813741,0.00020337832,0.00011119135,0.001034802,0.00006823941,0.000012655928,0.003290051,0.0000233637,0.9834579,0.0016054073],"study_design_scores_gemma":[0.0014524385,0.0010957,0.003057518,0.00029247056,0.00020602795,0.00004032706,0.000041428164,0.0000029107114,0.0001358188,0.000207245,0.99290717,0.0005609511],"about_ca_topic_score_codex":0.00010389601,"about_ca_topic_score_gemma":0.00059926335,"teacher_disagreement_score":0.009449265,"about_ca_system_score_codex":0.0007203588,"about_ca_system_score_gemma":0.002040235,"threshold_uncertainty_score":0.9998156},"labels":[],"label_agreement":null},{"id":"W1991359965","doi":"10.1016/j.vaccine.2011.07.078","title":"Immunogenicity and safety of fully liquid DTaP5-IPV-Hib compared with DTaP3-IPV/Hib when both coadministered with a heptavalent pneumococcal conjugate vaccine (PCV7) at 2, 3, 4, and 12 to 18 months of age: A phase III, single-blind, randomised, controlled, multicentre study","year":2011,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"","keywords":"Immunogenicity; Booster dose; Hib vaccine; Medicine; Booster (rocketry); Pneumococcal conjugate vaccine; Antigen; Immunology; Pediatrics; Conjugate vaccine; Immunization; Streptococcus pneumoniae; Biology; Microbiology","score_opus":0.03547789631379851,"score_gpt":0.2789255224947751,"score_spread":0.2434476261809766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991359965","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9884783,0.00055809686,0.0002721247,0.00041166908,0.00009691168,0.009553293,0.00010795019,0.00008922848,0.00043241592],"genre_scores_gemma":[0.9984643,0.00011445803,0.0002846146,0.00023513772,0.00007482096,0.00029724377,0.00003674599,0.0000780037,0.00041468008],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.99622774,0.00035480649,0.0015491957,0.00078835856,0.00048723683,0.0005926574],"domain_scores_gemma":[0.9968682,0.0003323864,0.00079471484,0.0008422448,0.00049396313,0.00066849194],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006674292,0.0006881357,0.0026112306,0.00038516402,0.00026406266,0.000029228593,0.00019521319,0.0001614397,0.00034521456],"category_scores_gemma":[0.0001648063,0.0004579546,0.0002081579,0.0003323495,0.00011587737,0.00016370788,0.00021519298,0.00032966852,0.000004389179],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.69721806,0.007000293,0.06666784,0.00024546578,0.002215489,0.00035352955,0.0067106076,0.000026597108,0.21919176,0.0000039311753,0.000088884655,0.00027752935],"study_design_scores_gemma":[0.8556854,0.04010152,0.07842556,0.0006669537,0.0037249366,0.00046496332,0.0029607175,0.00043480058,0.016087366,0.000002806029,0.0007772774,0.00066771166],"about_ca_topic_score_codex":0.0004265524,"about_ca_topic_score_gemma":0.0025140652,"teacher_disagreement_score":0.2031044,"about_ca_system_score_codex":0.00012254264,"about_ca_system_score_gemma":0.00018267347,"threshold_uncertainty_score":0.9997872},"labels":[],"label_agreement":null},{"id":"W1993471665","doi":"10.3402/ijch.v72i0.21606","title":"The epidemiology of invasive pneumococcal disease in the Canadian North from 1999 to 2010","year":2013,"lang":"en","type":"article","venue":"International Journal of Circumpolar Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Epidemiology; Medicine; Incidence (geometry); Population; Case fatality rate; Demography; Vaccination; Pneumococcal conjugate vaccine; Pediatrics; Context (archaeology); Conjugate vaccine; Circumpolar star; Public health; Environmental health; Streptococcus pneumoniae; Geography; Immunization; Immunology; Internal medicine","score_opus":0.037170419018406294,"score_gpt":0.33822843613041875,"score_spread":0.30105801711201247,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1993471665","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8316767,0.0006243048,0.000046672692,0.16642411,0.00084600033,0.00026373225,0.000048414866,0.00000194589,0.00006812027],"genre_scores_gemma":[0.9778701,0.00026548843,0.000027645416,0.021342747,0.00045284958,0.000011066408,0.000010259839,0.000006480366,0.000013353992],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982757,0.00036104422,0.00070992875,0.00009203698,0.0003276801,0.000233602],"domain_scores_gemma":[0.9975028,0.0009219315,0.00037147405,0.00017974811,0.00044257558,0.0005814544],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00089519686,0.000082439496,0.00024824517,0.00027176458,0.00013287054,0.000015424466,0.00038525162,0.000045229728,0.000051993273],"category_scores_gemma":[0.0020800557,0.000045830675,0.00012434318,0.00013311412,0.00009022019,0.000088357556,0.00001900116,0.00047466272,0.000036725105],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003442702,0.00007095226,0.99355286,0.0000065684058,0.00006474959,0.000052589832,0.0006340278,0.00007660025,0.00040730365,0.00041356558,0.0026089826,0.0020773762],"study_design_scores_gemma":[0.00032539826,0.00016401923,0.9789397,0.000095739815,0.000011559075,0.000090091526,0.00013290573,0.00002250098,0.0000075638413,0.0013045587,0.0188695,0.000036442696],"about_ca_topic_score_codex":0.16123568,"about_ca_topic_score_gemma":0.35102454,"teacher_disagreement_score":0.18978886,"about_ca_system_score_codex":0.0003448824,"about_ca_system_score_gemma":0.0028761497,"threshold_uncertainty_score":0.84434974},"labels":[],"label_agreement":null},{"id":"W1993709168","doi":"10.1139/w07-133","title":"Microarray analysis of Streptococcus pneumoniae gene expression changes to human lung epithelial cells","year":2008,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Biology; Streptococcus pneumoniae; Gene; Microarray analysis techniques; Gene expression; Pathogenesis; A549 cell; Microarray; Microbiology; Gene expression profiling; DNA microarray; Transcriptome; Molecular biology; Cell culture; Genetics; Immunology","score_opus":0.017264963838006176,"score_gpt":0.2563154296731181,"score_spread":0.2390504658351119,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1993709168","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978036,0.0002561001,0.0000950208,0.00094051973,0.00039218867,0.00017218091,0.00024056806,0.000004936712,0.000094834875],"genre_scores_gemma":[0.99840623,0.00003419636,0.00011248084,0.00091144367,0.00021621946,0.0000032091707,0.000022666232,0.0000149402285,0.00027863003],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99888015,0.000098175486,0.00046403293,0.00017195204,0.000050062554,0.00033560235],"domain_scores_gemma":[0.9985088,0.00003317837,0.00029463792,0.00023531042,0.00029090003,0.00063714455],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016716078,0.00015010545,0.00062930555,0.0015397604,0.00019028262,0.0000048384204,0.00016548955,0.00017663019,0.00034093295],"category_scores_gemma":[0.00003735497,0.00012178481,0.00028424143,0.0005192323,0.00019228642,0.000025497122,0.000014477048,0.0002501093,0.000011114653],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000119630595,0.00003275999,0.051840585,0.000011394204,0.00048221144,0.00028526637,0.00062363956,0.00011086915,0.9435277,0.00000209399,0.0029911527,0.000080344515],"study_design_scores_gemma":[0.0005291384,0.000585191,0.040485006,0.000054614844,0.00063758687,0.0007385046,0.00007902341,0.0000014291929,0.9158692,0.000001338032,0.040892262,0.00012675529],"about_ca_topic_score_codex":0.00074687216,"about_ca_topic_score_gemma":0.014153358,"teacher_disagreement_score":0.037901107,"about_ca_system_score_codex":0.00015483239,"about_ca_system_score_gemma":0.0006901732,"threshold_uncertainty_score":0.7897906},"labels":[],"label_agreement":null},{"id":"W1993773404","doi":"10.1007/s11908-001-0055-y","title":"Quinolone resistance: Older concepts and newer developments","year":2001,"lang":"en","type":"article","venue":"Current Infectious Disease Reports","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"Medical Research Council Canada","keywords":"Quinolone; Streptococcus pneumoniae; Drug resistance; Medicine; Antibiotics; Microbiology; Intensive care medicine; Biology","score_opus":0.017850059635993933,"score_gpt":0.323541056732529,"score_spread":0.305690997096535,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1993773404","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9849312,0.0039225863,0.00009827731,0.0004342577,0.0019016314,0.0005303678,0.0000044965946,0.00028479536,0.0078924345],"genre_scores_gemma":[0.99521697,0.0013500098,0.0000070653573,0.00040352016,0.00027388363,0.00010547077,0.000026052814,0.000026440937,0.0025905948],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984263,0.000039308878,0.00040838507,0.0004415491,0.00032787313,0.0003565739],"domain_scores_gemma":[0.9985827,0.00002953003,0.00019741268,0.00036045242,0.00019923023,0.0006306399],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013405201,0.00021931712,0.0002760717,0.0001608885,0.00024281476,0.0000408794,0.000023496506,0.00008078221,0.00019272037],"category_scores_gemma":[0.00025637925,0.00019381261,0.0001096105,0.00028784215,0.000092491224,0.00012082265,0.000046728164,0.00023326941,0.000047152585],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031784875,0.0004482956,0.98557687,0.00017014955,0.000084732324,0.0016531743,0.000073666255,0.0000017602298,0.00032890536,0.000040469815,0.005807533,0.0057826615],"study_design_scores_gemma":[0.000582109,0.000026258327,0.5778996,0.00022909696,0.00014983905,0.0008582863,0.000007667238,0.0000016985642,0.00003435472,0.00016558773,0.41987455,0.00017094989],"about_ca_topic_score_codex":0.000005295603,"about_ca_topic_score_gemma":0.000012004633,"teacher_disagreement_score":0.414067,"about_ca_system_score_codex":0.00021390634,"about_ca_system_score_gemma":0.00035133277,"threshold_uncertainty_score":0.7903449},"labels":[],"label_agreement":null},{"id":"W1993850184","doi":"10.1177/1715163513501630","title":"Nova Scotia pharmacies preparing to administer flu vaccines with approval of new authority","year":2013,"lang":"en","type":"article","venue":"Canadian Pharmacists Journal / Revue des Pharmaciens du Canada","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Nova scotia; Pharmacy; Medicine; Drug approval; Virology; Business; Family medicine; Pharmacology; Geography; Drug","score_opus":0.03955245778970356,"score_gpt":0.2927851711703927,"score_spread":0.25323271338068915,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1993850184","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99259955,0.00020475732,0.00020351508,0.00075559044,0.0016823452,0.000929932,0.00009984388,0.000043010383,0.0034814612],"genre_scores_gemma":[0.99215156,0.00013520873,0.00053442764,0.0037043882,0.0011355117,0.000017836055,0.000010959101,0.0000704578,0.0022396692],"study_design_codex":"not_applicable","study_design_gemma":"case_report","domain_scores_codex":[0.99717605,0.00008697217,0.00073093607,0.0004501054,0.00052310183,0.0010328428],"domain_scores_gemma":[0.9937301,0.000057478526,0.00026958482,0.0003424448,0.00091329333,0.0046870573],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00029979748,0.00044980578,0.00061900273,0.00061642757,0.0004508291,0.00015995899,0.00040497867,0.000077391596,0.0020941924],"category_scores_gemma":[0.00014268859,0.000388562,0.0001806234,0.0009646389,0.0001427743,0.0004629907,0.000052823572,0.00072163035,0.0000626863],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010080683,0.00047054948,0.1552047,0.0017858826,0.002285801,0.049915724,0.0059773447,0.002883231,0.25968227,0.00006853716,0.35694376,0.16377415],"study_design_scores_gemma":[0.0058351923,0.0005921641,0.0025411844,0.00018331652,0.00079287,0.77334005,0.000060358718,0.0011323164,0.04298758,0.000026433137,0.1714201,0.0010884193],"about_ca_topic_score_codex":0.06938838,"about_ca_topic_score_gemma":0.13749787,"teacher_disagreement_score":0.7234243,"about_ca_system_score_codex":0.0012016238,"about_ca_system_score_gemma":0.007570416,"threshold_uncertainty_score":0.99985665},"labels":[],"label_agreement":null},{"id":"W1993976661","doi":"10.1046/j.1532-5415.2002.50061.x","title":"Community‐Acquired Pneumonia and Do Not Resuscitate Orders","year":2002,"lang":"en","type":"article","venue":"Journal of the American Geriatrics Society","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Queen Elizabeth II Health Sciences Centre; Dalhousie University","funders":"","keywords":"Medicine; Pneumonia; Do not resuscitate; Retrospective cohort study; Do Not Resuscitate Order; Emergency medicine; Pediatrics; Community-acquired pneumonia; Cohort; Intensive care medicine; Internal medicine","score_opus":0.02607265202961446,"score_gpt":0.26913014667536184,"score_spread":0.24305749464574739,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1993976661","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98226964,0.0002575301,0.000048381215,0.016553897,0.00036840676,0.000100868136,0.0000052202345,0.0000175806,0.00037848303],"genre_scores_gemma":[0.99237597,0.0017651089,0.00046601103,0.004821091,0.00024918246,0.0000013579449,1.7111192e-7,0.000019875939,0.0003012191],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987449,0.00023914043,0.00038496402,0.00008475585,0.00033510991,0.00021114726],"domain_scores_gemma":[0.9983785,0.00017486884,0.00072840956,0.00033461163,0.0002134358,0.00017013503],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005839537,0.00013389126,0.00038020764,0.00007003711,0.00048730895,0.000045239092,0.00021271122,0.000049709543,0.000016151445],"category_scores_gemma":[0.00022094767,0.00008450413,0.00044680678,0.0007443946,0.00050608534,0.000090083515,0.00010291108,0.0006340812,0.0000043673544],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028271085,0.0013809132,0.24038848,0.00023442168,0.001608318,0.000081610764,0.017843038,0.00020592977,0.48157936,0.00009437996,0.2291943,0.027106525],"study_design_scores_gemma":[0.005237373,0.0031737331,0.7275622,0.00019858351,0.0014564485,0.0040960927,0.011952623,0.0010182676,0.0009547071,0.0003437643,0.24336511,0.0006410889],"about_ca_topic_score_codex":0.000047485843,"about_ca_topic_score_gemma":0.0000021510382,"teacher_disagreement_score":0.48717374,"about_ca_system_score_codex":0.0001130716,"about_ca_system_score_gemma":0.0000686109,"threshold_uncertainty_score":0.37480357},"labels":[],"label_agreement":null},{"id":"W1994889557","doi":"10.1159/000079883","title":"Efficacy of Pneumococcal Immunization in Patients with Renal Disease – What Is the Data?","year":2004,"lang":"en","type":"review","venue":"American Journal of Nephrology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Incidence (geometry); Population; Internal medicine; Immunology; Nephrotic syndrome; Antibody titer; Serology; Immunization; Titer; Gastroenterology; Antibody","score_opus":0.02155470279709965,"score_gpt":0.31845852917315143,"score_spread":0.2969038263760518,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1994889557","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.06730491,0.92989236,0.00006203499,0.0016493438,0.00021670287,0.00080880726,0.000047165122,0.000007152645,0.000011497039],"genre_scores_gemma":[0.009490251,0.9891829,0.000036935035,0.0010019063,0.0001525651,0.000005867655,0.00009066797,0.00003392144,0.0000050187214],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981509,0.00036149338,0.00083343004,0.00019217099,0.00026582167,0.00019617699],"domain_scores_gemma":[0.99724287,0.00024002689,0.0014967802,0.0006714521,0.00019874486,0.00015013451],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023021882,0.00022547526,0.0014025847,0.00036161137,0.000046257275,0.000013617567,0.00041384774,0.00008194793,0.00002788536],"category_scores_gemma":[0.000092077134,0.00011655059,0.00022773953,0.0006611482,0.00063420576,0.00018292689,0.000087606946,0.00069796323,0.0000050034955],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007084414,0.000865456,0.00552384,0.00087460474,0.000758401,0.00011750183,0.0001594811,0.00004009232,0.0000067402834,0.000009901583,0.00007412946,0.9908614],"study_design_scores_gemma":[0.0024297507,0.0035709313,0.11766201,0.011112707,0.002723149,0.00038099973,0.000052836036,0.0000021215399,1.9311304e-7,0.0000086263335,0.8618909,0.00016578034],"about_ca_topic_score_codex":0.000013824785,"about_ca_topic_score_gemma":0.0000031457798,"teacher_disagreement_score":0.99069566,"about_ca_system_score_codex":0.000103985185,"about_ca_system_score_gemma":0.0011970887,"threshold_uncertainty_score":0.4752795},"labels":[],"label_agreement":null},{"id":"W1995231765","doi":"10.1086/429242","title":"Predicting Antimicrobial Resistance in Invasive Pneumococcal Infections","year":2005,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":258,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Mount Sinai Hospital; University of Toronto","funders":"","keywords":"Medicine; Azithromycin; Penicillin; Streptococcus pneumoniae; Internal medicine; Pneumococcal infections; Trimethoprim; Ceftriaxone; Antibiotic resistance; Odds ratio; Sulfamethoxazole; Antibiotics; Antimicrobial; Clarithromycin; Microbiology; Helicobacter pylori; Biology","score_opus":0.027772211800108082,"score_gpt":0.3460549324056089,"score_spread":0.31828272060550084,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1995231765","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9860517,0.0001566077,0.00004505584,0.002349681,0.0007015159,0.00055613177,0.00003689082,0.00045203534,0.009650405],"genre_scores_gemma":[0.9948835,0.0003124351,0.000014577386,0.002702354,0.00148154,0.00009217212,0.000023229875,0.000036928537,0.00045329516],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99775034,0.00021809476,0.0009135478,0.0005165964,0.00017663246,0.00042478484],"domain_scores_gemma":[0.9980394,0.0007840563,0.00017871754,0.00039845722,0.00015615602,0.00044317992],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002645964,0.00024112442,0.0005443297,0.00028938195,0.00026431054,0.00004583612,0.000086741056,0.00024787194,0.00015115833],"category_scores_gemma":[0.0024949617,0.00022573146,0.00041680638,0.00059896725,0.0003331818,0.00024174116,0.000072370574,0.0006892719,0.00027398733],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000329457,0.0026652813,0.9927648,0.000085209904,0.000077648314,0.00006491624,0.00004341087,0.00011839127,0.0017628488,0.00013265993,0.001409157,0.0008427686],"study_design_scores_gemma":[0.0024709702,0.0003827924,0.9771119,0.00029386926,0.00018823995,0.000038156326,0.000018731338,0.000059733717,0.00013959773,0.00019605519,0.018864628,0.00023534046],"about_ca_topic_score_codex":0.00002224218,"about_ca_topic_score_gemma":0.0028429304,"teacher_disagreement_score":0.017455472,"about_ca_system_score_codex":0.0002032172,"about_ca_system_score_gemma":0.00048059688,"threshold_uncertainty_score":0.9205062},"labels":[],"label_agreement":null},{"id":"W1995873184","doi":"10.1016/j.str.2011.04.002","title":"Sticking Together: Glycogen-Degrading Virulence","year":2011,"lang":"en","type":"letter","venue":"Structure","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Virulence; Glycogen; Chemistry; Microbiology; Biochemistry; Biology; Gene","score_opus":0.024050673718089846,"score_gpt":0.2613710037903894,"score_spread":0.23732033007229958,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1995873184","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.18854007,0.0029938612,0.00069011207,0.7054253,0.01812,0.0030607246,0.0012043084,0.0017978314,0.078167744],"genre_scores_gemma":[0.09319904,0.000062206724,0.00036561818,0.8895764,0.011945995,0.000020832418,0.00020487522,0.00016488433,0.004460158],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984747,0.00005408757,0.00026035818,0.00045326972,0.0003168259,0.00044071418],"domain_scores_gemma":[0.9990314,0.000045649675,0.00015444146,0.00057351845,0.00009315337,0.000101841535],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000041911826,0.00038391503,0.00047572993,0.00021313697,0.00018098147,0.000030807663,0.00018917391,0.0011871846,0.0012337102],"category_scores_gemma":[0.00006648887,0.0002916894,0.00022274195,0.00018532421,0.00012598511,0.00005219646,0.000048661983,0.0028110966,0.000100900055],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020625948,0.000015729756,0.0060840594,0.00069829455,0.0004251553,0.002599701,0.00059647375,0.0000016705643,0.031893767,0.00012942978,0.9524571,0.005078033],"study_design_scores_gemma":[0.00027268738,0.000109019784,0.0014196087,0.00030050694,0.00034106808,0.0010520071,0.00001678052,0.000003429011,0.0013954939,0.0012192886,0.9935316,0.00033852455],"about_ca_topic_score_codex":0.000028144621,"about_ca_topic_score_gemma":0.0000061891515,"teacher_disagreement_score":0.18415104,"about_ca_system_score_codex":0.00009795582,"about_ca_system_score_gemma":0.0001688028,"threshold_uncertainty_score":0.9999535},"labels":[],"label_agreement":null},{"id":"W1995924937","doi":"10.1177/10454411010120030201","title":"Genetic Competence and Transformation in Oral Streptococci","year":2001,"lang":"en","type":"review","venue":"Critical Reviews in Oral Biology & Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":124,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Dental and Craniofacial Research","keywords":"Biology; Bacteria; Microbiology; Horizontal gene transfer; Streptococcus pneumoniae; Organism; Genetics; Genome; Gene","score_opus":0.11551082921159081,"score_gpt":0.45344000882709823,"score_spread":0.3379291796155074,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1995924937","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00022093204,0.99411225,0.00014189695,0.0018274685,0.00035428783,0.0022007318,0.000012190618,0.000030228388,0.0011000261],"genre_scores_gemma":[0.00046420662,0.9972882,0.00016163476,0.0014181533,0.0002417928,0.00027670755,0.00009379676,0.000025464311,0.000030017045],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9960707,0.0008517662,0.0018643589,0.00056001794,0.00012718156,0.0005259649],"domain_scores_gemma":[0.9985008,0.0006295803,0.00014238898,0.00037088283,0.00006181428,0.0002944884],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001031034,0.00050102413,0.003897858,0.00053596025,0.00005333974,0.0000063704633,0.00015328138,0.0006232905,0.00036222275],"category_scores_gemma":[0.0022443437,0.00030465878,0.00023029307,0.00084657856,0.0010577084,0.00005948002,0.00003269714,0.0011473679,0.00008747485],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000061987103,0.000100822304,0.002316045,0.013113885,0.00001683563,0.00013397716,0.00004935834,2.7429214e-8,0.000029952469,0.00096430426,0.00011792624,0.98315066],"study_design_scores_gemma":[0.00076638506,0.0006052595,0.0012391105,0.040191766,0.000627575,0.0007119888,0.000024126442,0.0000082099805,1.6789232e-7,0.00025589878,0.95532954,0.00024000308],"about_ca_topic_score_codex":0.00004348092,"about_ca_topic_score_gemma":0.00010802891,"teacher_disagreement_score":0.9829107,"about_ca_system_score_codex":0.00014636005,"about_ca_system_score_gemma":0.000165184,"threshold_uncertainty_score":0.9999406},"labels":[],"label_agreement":null},{"id":"W1996065289","doi":"10.1378/chest.128.4_meetingabstracts.372s-a","title":"PATIENT RISK FACTORS IN COMMUNITY-ACQUIRED PNEUMONIA INFECTIONS OUTCOME FOLLOWING TREATMENT WITH GEMIFLOXACIN","year":2005,"lang":"en","type":"article","venue":"CHEST Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Gemifloxacin; Medicine; Community-acquired pneumonia; Pneumonia; Intensive care medicine; Outcome (game theory); Internal medicine; Antibacterial agent; Antibiotics; Microbiology","score_opus":0.030642702770834793,"score_gpt":0.29741538355866604,"score_spread":0.26677268078783123,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1996065289","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99752885,0.000071191746,0.000113297494,0.0006442221,0.00026822326,0.00024104676,0.0000066629436,0.00006557838,0.0010609317],"genre_scores_gemma":[0.9991827,0.00009751841,0.00016022194,0.00019073379,0.0001639303,0.000022526312,0.000006380336,0.000030148907,0.00014585031],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99860907,0.00023214691,0.0004734501,0.00013081342,0.00021557021,0.00033897368],"domain_scores_gemma":[0.99905133,0.00012344193,0.00019069825,0.00028699602,0.000055806344,0.00029171037],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023669912,0.00023995075,0.00038815604,0.0003342892,0.00076287886,0.000054997516,0.00006230661,0.00010344647,0.00005976295],"category_scores_gemma":[0.00008257144,0.00015639563,0.00022889864,0.00031582615,0.00006009528,0.00020292155,0.00002183456,0.0007891312,0.00003164182],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002286047,0.001203226,0.9819287,0.000011807429,0.00017489662,0.00010332237,0.002956319,0.00060335424,0.008509036,0.0000017389414,0.000014971298,0.0044697323],"study_design_scores_gemma":[0.0032147062,0.003325842,0.9563948,0.00014771159,0.00031488243,0.0008712381,0.001849078,0.000076374876,0.0020378318,0.000012919076,0.031514537,0.0002400901],"about_ca_topic_score_codex":0.00024559788,"about_ca_topic_score_gemma":0.0007976217,"teacher_disagreement_score":0.031499565,"about_ca_system_score_codex":0.0008034812,"about_ca_system_score_gemma":0.00015368189,"threshold_uncertainty_score":0.6377629},"labels":[],"label_agreement":null},{"id":"W1996179381","doi":"10.1046/j.1524-4733.2001.40202-183.x","title":"PID25: ECONOMIC EVALUATION OF MACROLIDES AND FLUOROQUINOLONES FOR THE TREATMENT OF RESPIRATORY TRACT INFECTIONS","year":2001,"lang":"en","type":"article","venue":"Value in Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Abbott (Canada); Université de Montréal","funders":"","keywords":"Respiratory tract infections; Respiratory tract; Medicine; Intensive care medicine; Respiratory system; Internal medicine","score_opus":0.12896302962989714,"score_gpt":0.39270221464208416,"score_spread":0.263739185012187,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1996179381","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941651,0.0029644915,0.00003962955,0.0013704804,0.00017495708,0.0011446497,0.000017864553,0.000010715809,0.000112095346],"genre_scores_gemma":[0.9970264,0.0025657723,0.000021315496,0.00011108494,0.00009025951,0.00016181136,0.0000022653696,0.000008165092,0.000012965221],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99915946,0.00013073887,0.0003791608,0.00011746074,0.000088077315,0.00012508192],"domain_scores_gemma":[0.9992442,0.00031304915,0.00015756562,0.00017360291,0.000063844,0.000047714035],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00073951384,0.00007253249,0.00022905448,0.00015673395,0.00008957326,0.000002694039,0.00002030935,0.000047291942,0.000016702073],"category_scores_gemma":[0.00006686239,0.000049947812,0.000066550114,0.00009446198,0.00007324347,0.00003413803,0.0000031629365,0.000042039163,0.0000011682881],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011958272,0.0019814058,0.8611305,0.00024801723,0.00011966328,0.0000011049455,0.001437484,0.01894478,0.004036455,0.0010533719,0.00007081125,0.11085684],"study_design_scores_gemma":[0.004016795,0.0066977334,0.94019294,0.00014021488,0.00020027887,0.00005779325,0.0002595806,0.017349219,0.0012615002,0.0005282932,0.029214576,0.000081099],"about_ca_topic_score_codex":0.0013822067,"about_ca_topic_score_gemma":0.00028518646,"teacher_disagreement_score":0.11077574,"about_ca_system_score_codex":0.0002615782,"about_ca_system_score_gemma":0.0004771855,"threshold_uncertainty_score":0.20894922},"labels":[],"label_agreement":null},{"id":"W1996226400","doi":"10.1074/jbc.c800150200","title":"The Structural Basis for T-antigen Hydrolysis by Streptococcus pneumoniae","year":2008,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences; University of British Columbia","funders":"Howard Hughes Medical Institute","keywords":"Streptococcus pneumoniae; Antigen; Microbiology; Hydrolysis; Chemistry; Biology; Biochemistry; Immunology; Antibiotics","score_opus":0.02586196534208338,"score_gpt":0.28034193315927103,"score_spread":0.2544799678171876,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1996226400","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99684995,0.0005657306,0.000038723625,0.0018683529,0.000098278586,0.000110275636,0.000023788232,0.000015259046,0.00042961453],"genre_scores_gemma":[0.99839747,0.00048692248,0.000030309897,0.00023971696,0.0004185167,0.000010083582,0.0000053405106,0.0000069549337,0.00040468684],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99907154,0.00002261337,0.0004096778,0.00012036666,0.00016039559,0.00021542367],"domain_scores_gemma":[0.9989989,0.00023996484,0.00026862396,0.00014550325,0.0001747927,0.00017221391],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016913807,0.00012513362,0.00029404325,0.000014937653,0.00034510833,0.000013056099,0.00014933449,0.000167147,0.00009160525],"category_scores_gemma":[0.00043553184,0.000059452683,0.0003847531,0.00009561024,0.00021583092,0.00003075514,0.00002177754,0.00030942052,0.0000025951751],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058161622,0.000048198406,0.08253822,0.000011090333,0.00013605456,0.000034580225,0.000015729529,0.0000033838905,0.9131692,0.0000013400983,0.0028884348,0.0010956344],"study_design_scores_gemma":[0.0017870545,0.0011303799,0.17389332,0.00005729108,0.0001738396,0.0025448985,0.00020417021,0.00008892947,0.60733956,0.00019825027,0.21229659,0.0002857327],"about_ca_topic_score_codex":5.7579786e-7,"about_ca_topic_score_gemma":1.2780369e-7,"teacher_disagreement_score":0.30582964,"about_ca_system_score_codex":0.000054538054,"about_ca_system_score_gemma":0.00009100156,"threshold_uncertainty_score":0.2654329},"labels":[],"label_agreement":null},{"id":"W1996267492","doi":"10.1097/inf.0b013e3182a4dcfa","title":"Review of Guidelines for Evidence-based Management for Childhood Community-acquired Pneumonia in Under-5 Years From Developed and Developing Countries","year":2013,"lang":"en","type":"review","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Community-acquired pneumonia; Pneumonia; Developing country; Intensive care medicine; Medicine; Environmental health; Economic growth; Economics; Internal medicine","score_opus":0.15000074611160705,"score_gpt":0.3980637290003445,"score_spread":0.24806298288873743,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1996267492","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0027660527,0.9886585,0.0015145672,0.001786348,0.00042892265,0.0046339384,0.00016258396,0.00003808233,0.000011046061],"genre_scores_gemma":[0.00011464226,0.99323845,0.0007535273,0.003949454,0.0007856078,0.0010026433,0.000063883104,0.00006981445,0.00002198752],"study_design_codex":"systematic_review","study_design_gemma":"not_applicable","domain_scores_codex":[0.99692357,0.00055885094,0.0015927393,0.00025509734,0.00030623286,0.00036350935],"domain_scores_gemma":[0.99549866,0.0018918186,0.0011149775,0.0004570731,0.0007985181,0.00023898146],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001718734,0.00044697232,0.0015864223,0.0005578853,0.0005159272,0.00008115759,0.00029281556,0.00016448945,0.000024708792],"category_scores_gemma":[0.0016305796,0.00029435917,0.00062560145,0.00057253696,0.00009935661,0.00014093028,0.00010813885,0.0004952053,0.0000073902443],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012206091,0.00067491183,0.0065305354,0.49441513,0.0017831791,0.000038870487,0.000192462,0.00003893143,0.0000012489733,0.00017700733,0.011036128,0.48498952],"study_design_scores_gemma":[0.0024383634,0.00032990836,0.01727887,0.2585692,0.016606886,0.00026419843,0.00006466497,0.000020169753,2.0913416e-7,0.0011430907,0.7026109,0.00067354017],"about_ca_topic_score_codex":0.000036778853,"about_ca_topic_score_gemma":0.000014140612,"teacher_disagreement_score":0.69157475,"about_ca_system_score_codex":0.00034587036,"about_ca_system_score_gemma":0.0024666162,"threshold_uncertainty_score":0.9999508},"labels":[],"label_agreement":null},{"id":"W1997030490","doi":"10.1016/s1201-9712(03)90039-7","title":"Serotypes of respiratory tract isolates of Streptococcus pneumoniae from Jamaican children","year":2003,"lang":"en","type":"article","venue":"International Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"SickKids Foundation; Provincial Laboratory of Public Health; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Serotype; Cefotaxime; Streptococcus pneumoniae; Microbiology; Pneumococcal conjugate vaccine; Erythromycin; Cefuroxime; Penicillin; Ceftriaxone; Pneumococcal infections; Virology; Trimethoprim; Biology; Medicine; Antibiotics","score_opus":0.00897016759720467,"score_gpt":0.27750741770422177,"score_spread":0.2685372501070171,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1997030490","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99716735,0.00064211135,0.0001056861,0.00011930802,0.0005816464,0.00015346015,0.00016734873,0.000020076379,0.0010430275],"genre_scores_gemma":[0.9993072,0.00010374833,0.000013984069,0.00022788226,0.00030210277,0.000004697685,0.000007855362,0.000018555205,0.000013939025],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984399,0.0001075386,0.00075967686,0.0001333776,0.00043543588,0.00012408422],"domain_scores_gemma":[0.99773407,0.00018392966,0.00081319734,0.00016972644,0.0009207897,0.00017827455],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013305835,0.00015449012,0.0004100737,0.00041247346,0.000038696577,0.000017182496,0.00016500991,0.00008090325,0.00033480584],"category_scores_gemma":[0.0005754206,0.00012535368,0.0003983407,0.00015905245,0.00013672632,0.00018305931,0.00002019402,0.00022703104,0.0000063590815],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006557052,0.0012627452,0.94207937,0.000015326483,0.00085337245,0.000035467972,0.00006616987,0.00020480211,0.054044053,0.00020036701,0.00013151944,0.0010412373],"study_design_scores_gemma":[0.0020557402,0.0008728462,0.97708464,0.00024829694,0.00032426172,0.00016096422,0.00006241065,0.000004627147,0.017025439,0.0008733097,0.0011790179,0.00010842128],"about_ca_topic_score_codex":0.000050583243,"about_ca_topic_score_gemma":0.000010876489,"teacher_disagreement_score":0.037018616,"about_ca_system_score_codex":0.000090278874,"about_ca_system_score_gemma":0.00041604595,"threshold_uncertainty_score":0.5111774},"labels":[],"label_agreement":null},{"id":"W1997932743","doi":"10.3111/13696998.2011.622323","title":"Health and economic impact of PHiD-CV in Canada and the UK: a Markov modelling exercise","year":2011,"lang":"en","type":"article","venue":"Journal of Medical Economics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"GlaxoSmithKline (Canada); McMaster University","funders":"","keywords":"Medicine; Haemophilus influenzae; Conjugate vaccine; Cohort; Pneumococcal conjugate vaccine; Epidemiology; Disease burden; Pandemic; Pneumonia; Herd immunity; Streptococcus pneumoniae; Intensive care medicine; Disease; Environmental health; Vaccination; Infectious disease (medical specialty); Immunology; Population; Coronavirus disease 2019 (COVID-19); Immunization; Internal medicine; Antibiotics","score_opus":0.02227451260633569,"score_gpt":0.26485415048471544,"score_spread":0.24257963787837974,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1997932743","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961657,0.0008582631,0.000051711155,0.0025409143,0.0001435592,0.00008546707,0.000004369529,7.798675e-7,0.000149226],"genre_scores_gemma":[0.98888135,0.0103794215,0.00006412376,0.0005873174,0.000075970376,9.1152043e-7,2.3594812e-7,0.0000059807,0.0000046617442],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99911165,0.000034632674,0.0005842064,0.00006706836,0.00007507302,0.00012736733],"domain_scores_gemma":[0.9990639,0.000106171734,0.00031817524,0.000082376835,0.000017356255,0.00041201877],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00085127435,0.000072524665,0.00048626275,0.000087827066,0.00002689564,0.0000046729947,0.00007112206,0.000054696317,0.00009161826],"category_scores_gemma":[0.00004917166,0.00004347714,0.00007602953,0.000021424477,0.00012543036,0.000046969762,0.000023967912,0.00029670948,2.5671534e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026080902,0.00017297345,0.926201,0.00026000376,0.00055533816,0.0001436283,0.004105356,0.0059130425,0.000013871363,0.00083701254,0.0017409113,0.057448808],"study_design_scores_gemma":[0.038603146,0.0026269678,0.4987152,0.0023694935,0.00037065044,0.007739516,0.0035052185,0.43940848,0.00006331593,0.0040073073,0.0020552208,0.0005354746],"about_ca_topic_score_codex":0.4436914,"about_ca_topic_score_gemma":0.28379542,"teacher_disagreement_score":0.43349543,"about_ca_system_score_codex":0.00047562766,"about_ca_system_score_gemma":0.00592742,"threshold_uncertainty_score":0.99970806},"labels":[],"label_agreement":null},{"id":"W1997971543","doi":"10.1016/j.vaccine.2013.07.079","title":"Risk of invasive pneumococcal disease in children and adults with asthma: A systematic review","year":2013,"lang":"en","type":"review","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; Montreal Children's Hospital; McGill University","funders":"","keywords":"Pneumococcal disease; Asthma; Medicine; Pneumococcal infections; Intensive care medicine; Streptococcus pneumoniae; Disease; Pediatrics; Immunology; Internal medicine; Biology; Antibiotics; Microbiology","score_opus":0.009180441812823431,"score_gpt":0.26641835011000614,"score_spread":0.25723790829718274,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1997971543","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0050274758,0.98647636,0.0000010441044,0.00005878803,0.000023149852,0.008274452,0.00009260037,0.000026355532,0.000019742765],"genre_scores_gemma":[0.0005525759,0.9981765,0.000008348088,0.000079803285,0.00005844613,0.0009085778,0.000100400415,0.000047257745,0.000068101275],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.99792993,0.00031052876,0.0009765935,0.0003902586,0.0001893532,0.00020332176],"domain_scores_gemma":[0.99806225,0.00018118664,0.0007544103,0.0006071579,0.00011483568,0.00028017935],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022818026,0.00041436055,0.0035251013,0.0003114363,0.00003341155,0.000008344314,0.00010703832,0.00013668441,0.000045074055],"category_scores_gemma":[0.0006196079,0.00022161435,0.00028728376,0.0005175157,0.00001866292,0.00005549278,0.00005729462,0.0004383268,0.00005074588],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011702245,0.00014058562,0.009103243,0.9829394,0.00044202985,0.00003608263,0.000012761914,1.12966454e-7,4.793414e-7,0.0000034502257,0.00005640201,0.007253716],"study_design_scores_gemma":[0.0009773321,0.00033434673,0.02051188,0.96410453,0.009301423,0.00050609745,0.0000039295146,0.0000012299887,1.5171106e-7,0.0000016921076,0.004022941,0.00023442062],"about_ca_topic_score_codex":0.00006205164,"about_ca_topic_score_gemma":0.000031833297,"teacher_disagreement_score":0.01883488,"about_ca_system_score_codex":0.00005589511,"about_ca_system_score_gemma":0.00032446877,"threshold_uncertainty_score":0.90371704},"labels":[],"label_agreement":null},{"id":"W1998716311","doi":"10.1186/1471-2431-14-189","title":"Direct Streptococcus pneumoniae real-time PCR serotyping from pediatric parapneumonic effusions","year":2014,"lang":"en","type":"article","venue":"BMC Pediatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University; Children's Hospital of Eastern Ontario; University of Ottawa","funders":"Pfizer","keywords":"Serotype; Streptococcus pneumoniae; Medicine; Pneumonia; Microbiology; Virology; Pneumococcal vaccine; Polymerase chain reaction; Biology; Internal medicine; Antibiotics; Gene","score_opus":0.015128242769834028,"score_gpt":0.2562563272545138,"score_spread":0.2411280844846798,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998716311","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9823796,0.00022357349,0.0004379312,0.00025585128,0.00079639023,0.00078386907,0.00009221478,0.0007405258,0.014290021],"genre_scores_gemma":[0.9910373,0.0015472765,0.0004018428,0.00037204367,0.004888697,0.00015399285,0.0001221684,0.00011590342,0.0013607789],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99694896,0.00026265008,0.0007049029,0.0007740242,0.0005719456,0.0007375206],"domain_scores_gemma":[0.9969211,0.0009864563,0.00030962736,0.0009807342,0.00019587736,0.00060618226],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004469866,0.00046083593,0.0007033667,0.0005394435,0.00045633837,0.00007173157,0.00026193296,0.00038240085,0.0003125308],"category_scores_gemma":[0.0007325368,0.000410821,0.00041332358,0.0012217684,0.00006847108,0.00015711771,0.00015794326,0.0005313417,0.0016728959],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002725743,0.00033377166,0.96313375,0.0001453332,0.000035856596,0.000028604887,0.000120247154,0.00026465484,0.03281913,0.00004723827,0.0024091313,0.00063504564],"study_design_scores_gemma":[0.0022912303,0.0005543588,0.97595656,0.000044543372,0.0014313051,0.000031443218,0.00004584544,0.0028830902,0.0006215522,0.00017579092,0.01511933,0.0008449694],"about_ca_topic_score_codex":0.00015255096,"about_ca_topic_score_gemma":0.00007182478,"teacher_disagreement_score":0.032197576,"about_ca_system_score_codex":0.00014606476,"about_ca_system_score_gemma":0.00045894372,"threshold_uncertainty_score":0.99983436},"labels":[],"label_agreement":null},{"id":"W1999045782","doi":"10.1046/j.1365-2249.2003.02232.x","title":"Measurement and interpretation of pneumococcal IgG levels for clinical management","year":2003,"lang":"en","type":"article","venue":"Clinical & Experimental Immunology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Thomas Hospital","funders":"","keywords":"Serotype; Antibody; Immunology; Pneumococcal vaccine; Pneumococcal polysaccharide vaccine; Streptococcus pneumoniae; Vaccination; Antigen; Immunoglobulin G; Titer; Pneumococcal infections; Microbiology; Virology; Biology; Medicine; Pneumococcal disease; Antibiotics","score_opus":0.15188056296279848,"score_gpt":0.45724476008534265,"score_spread":0.30536419712254415,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1999045782","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9908194,0.002111081,0.0018205439,0.00033028753,0.0013600289,0.00091762,0.000004705354,0.000039367256,0.0025969876],"genre_scores_gemma":[0.9980913,0.00027794266,0.00069433334,0.00061868055,0.00006294973,0.0001254448,0.0000034698685,0.000017787304,0.00010808773],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9979139,0.0002918303,0.0010742457,0.00036769858,0.0001369721,0.0002153347],"domain_scores_gemma":[0.9990677,0.00021662239,0.00019125402,0.0002869,0.00012548825,0.00011199568],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010977488,0.00014954135,0.0005469444,0.00007635965,0.000074570984,0.000006708896,0.0000697396,0.00022267987,0.00005693136],"category_scores_gemma":[0.00043596758,0.00012757865,0.00029307205,0.000069000314,0.0005317339,0.00004758164,0.000060752413,0.00023068588,0.000017750634],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024604523,0.009650819,0.14363863,0.00026207414,0.003162843,0.000043548986,0.0005164956,0.0000021433189,0.74118346,0.018354237,0.00070348015,0.0800218],"study_design_scores_gemma":[0.020127995,0.016859483,0.756923,0.00040305915,0.0006842654,0.00020721645,0.0022278226,0.00019597782,0.11517642,0.000921283,0.0857201,0.000553381],"about_ca_topic_score_codex":0.0000012834662,"about_ca_topic_score_gemma":7.3661204e-7,"teacher_disagreement_score":0.6260071,"about_ca_system_score_codex":0.000059928036,"about_ca_system_score_gemma":0.000062714185,"threshold_uncertainty_score":0.5202506},"labels":[],"label_agreement":null},{"id":"W1999229831","doi":"10.1128/aac.45.6.1911-1914.2001","title":"Evaluation of Susceptibility Testing To Detect Fluoroquinolone Resistance Mechanisms in <i>Streptococcus pneumoniae</i>","year":2001,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Streptococcus pneumoniae; Levofloxacin; Microbiology; Streptococcaceae; Biology; Antibacterial agent; Virology; Antibiotics","score_opus":0.04124442401404443,"score_gpt":0.3081539346098258,"score_spread":0.2669095105957814,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1999229831","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99584633,0.000016177317,0.00021319352,0.002349554,0.00006908326,0.00073078676,0.000006449306,0.000031357547,0.0007370587],"genre_scores_gemma":[0.9961071,0.000095203104,0.00048703369,0.0031290692,0.00003871731,0.000022069542,0.0000029633754,0.000017252309,0.00010056487],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998857,0.00007236499,0.00030491097,0.0002961027,0.00025386782,0.00021570902],"domain_scores_gemma":[0.9993452,0.000025459078,0.00008532217,0.00022430466,0.00023762316,0.00008212772],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00058380933,0.0001378856,0.00026015047,0.00011658454,0.00007018432,0.0000121317225,0.00005512578,0.00008676049,0.000073644114],"category_scores_gemma":[0.00009128953,0.00012412816,0.000052504318,0.0004070309,0.000049952785,0.00005066004,0.000019411109,0.00010451113,0.0000058098794],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006622608,0.0001699524,0.11541992,0.000042836793,0.000029005509,0.000008350233,0.00018434925,0.000028878696,0.85873675,0.0000052519895,0.00037604262,0.024932433],"study_design_scores_gemma":[0.004053185,0.00048001087,0.80081487,0.0004561926,0.00012099827,0.000042918076,0.000058402937,0.0002704311,0.1875963,0.00051440403,0.0053273533,0.00026489937],"about_ca_topic_score_codex":0.000051361705,"about_ca_topic_score_gemma":0.0002944412,"teacher_disagreement_score":0.685395,"about_ca_system_score_codex":0.00008077223,"about_ca_system_score_gemma":0.00008672444,"threshold_uncertainty_score":0.5061799},"labels":[],"label_agreement":null},{"id":"W1999684327","doi":"10.1016/j.vaccine.2012.02.038","title":"Formulation, stability and immunogenicity of a trivalent pneumococcal protein vaccine formulated with aluminum salt adjuvants","year":2012,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"","keywords":"Immunogenicity; Adjuvant; Antigen; Pneumolysin; Microbiology; Chemistry; Alum; Streptococcus pneumoniae; Biology; Immunology","score_opus":0.018033525988708575,"score_gpt":0.2612157983346298,"score_spread":0.24318227234592124,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1999684327","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972277,0.00034199818,0.00025563635,0.00046255672,0.000070422015,0.0013787418,0.000019375815,0.000084015934,0.00015950052],"genre_scores_gemma":[0.99941355,0.000024461517,0.00018153134,0.00006811989,0.00011745894,0.00005935111,0.000025110692,0.000028196471,0.000082249666],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985604,0.00005894906,0.0005289953,0.00023499134,0.00022953222,0.000387083],"domain_scores_gemma":[0.99880797,0.00004874444,0.00020025086,0.0004279781,0.00025584904,0.00025921615],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036353155,0.00022560642,0.0004991383,0.00014996034,0.000116581534,0.0000069852963,0.000058898888,0.00012432161,0.00023170949],"category_scores_gemma":[0.00011317457,0.00015369021,0.00008765399,0.00038215122,0.000014599481,0.00026309644,0.000056242763,0.00021215578,0.000008389021],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007078648,0.00050326454,0.4700564,0.00017342383,0.00011176982,0.000002388898,0.00019925328,0.0000015993899,0.5273884,0.000060356528,0.000013684213,0.0007815865],"study_design_scores_gemma":[0.0051213903,0.0010226007,0.80131465,0.0001175737,0.00018710525,0.00013437543,0.00005056556,0.00015616938,0.19043995,0.000029448163,0.0012676128,0.00015854106],"about_ca_topic_score_codex":0.000053696436,"about_ca_topic_score_gemma":0.000035153003,"teacher_disagreement_score":0.33694842,"about_ca_system_score_codex":0.00007771564,"about_ca_system_score_gemma":0.000087357395,"threshold_uncertainty_score":0.6267305},"labels":[],"label_agreement":null},{"id":"W2000536109","doi":"10.1046/j.1525-1497.2001.016009590.x","title":"Arterial blood gas and pulse oximetry in initial management of patients with community-acquired pneumonia","year":2001,"lang":"en","type":"article","venue":"Journal of General Internal Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":68,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Agency for Healthcare Research and Quality","keywords":"Medicine; Pulse oximetry; Hypoxemia; Odds ratio; Comorbidity; Arterial blood; Confidence interval; Pneumonia; Community-acquired pneumonia; Internal medicine; Cardiology; Anesthesia","score_opus":0.018165494776308806,"score_gpt":0.2929176028771834,"score_spread":0.2747521081008746,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2000536109","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964534,0.00012412555,0.000103265826,0.0007821693,0.0004921389,0.0001516671,0.0000035551375,0.000005287071,0.0018844124],"genre_scores_gemma":[0.998405,0.00022171944,0.0001807373,0.0004814769,0.00051653164,0.0000022303516,0.000005348969,0.00001567347,0.00017129106],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99846977,0.00013498592,0.0007244764,0.000090180954,0.00040396245,0.00017660143],"domain_scores_gemma":[0.9989944,0.00004415579,0.00038733715,0.00016201855,0.00022502217,0.00018705748],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036461552,0.00015837274,0.0005202032,0.0004212086,0.000049384613,0.0000075888343,0.00011994285,0.000061311315,0.00010831405],"category_scores_gemma":[0.000036475085,0.00010026654,0.000060410617,0.00023286407,0.00020840741,0.0001118041,0.000050580344,0.00039344587,8.6076e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004376435,0.0020829765,0.82532835,0.00027793535,0.00088608987,0.0023111217,0.0007909058,0.000014675062,0.14993736,0.000043371223,0.00015613456,0.013794633],"study_design_scores_gemma":[0.01577826,0.007899618,0.96852434,0.0019322257,0.0005181385,0.0018255037,0.00037652298,0.000030470648,0.0017366256,0.00006831294,0.0011968199,0.00011313965],"about_ca_topic_score_codex":0.00015501436,"about_ca_topic_score_gemma":0.000035690824,"teacher_disagreement_score":0.14820074,"about_ca_system_score_codex":0.000046679917,"about_ca_system_score_gemma":0.00002605011,"threshold_uncertainty_score":0.40887508},"labels":[],"label_agreement":null},{"id":"W2000684985","doi":"10.1016/j.jamda.2006.02.004","title":"Interobserver Reliability of Radiologists’ Interpretations of Mobile Chest Radiographs for Nursing Home–Acquired Pneumonia","year":2006,"lang":"en","type":"article","venue":"Journal of the American Medical Directors Association","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; St Joseph's Health Centre; St. Joseph’s Healthcare Hamilton; University of Alberta; McMaster University","funders":"","keywords":"Medicine; Pneumonia; Radiography; Reliability (semiconductor); Radiology; Medical physics; Intensive care medicine; Nursing; Internal medicine","score_opus":0.007369660015544741,"score_gpt":0.2886468094873554,"score_spread":0.28127714947181065,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2000684985","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953989,0.00014404488,0.0010598012,0.0022480357,0.00072336657,0.0002700185,0.00002047171,0.000014206573,0.00012120028],"genre_scores_gemma":[0.99911433,0.00008099451,0.0003327378,0.00016066557,0.00022481616,0.0000125870665,0.00000442999,0.000013509579,0.000055907873],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9977789,0.00029700014,0.0009918809,0.00011785844,0.0006337419,0.0001806054],"domain_scores_gemma":[0.99588823,0.00084403896,0.002375813,0.0001933887,0.00058736705,0.00011118039],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001247381,0.00011739618,0.00070789945,0.00019262417,0.00007008755,0.000006499371,0.00019403832,0.000106335254,0.000016559134],"category_scores_gemma":[0.0033197142,0.00007535334,0.00068638846,0.00062960974,0.0004925759,0.00007657114,0.000017827342,0.00023418538,3.147661e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014928322,0.00074195076,0.91057384,0.00007047688,0.00022319326,0.0000014947866,0.0003166434,0.00017665698,0.07904341,0.000019801137,0.0022613837,0.006421837],"study_design_scores_gemma":[0.00074652047,0.00094413373,0.9909403,0.00047344936,0.00036728315,0.000029763974,0.0001743607,0.00035313424,0.004630565,0.00028516378,0.0009804775,0.00007486829],"about_ca_topic_score_codex":0.00016186778,"about_ca_topic_score_gemma":0.00001527909,"teacher_disagreement_score":0.08036641,"about_ca_system_score_codex":0.0005094745,"about_ca_system_score_gemma":0.00027064286,"threshold_uncertainty_score":0.39742476},"labels":[],"label_agreement":null},{"id":"W200091442","doi":"10.1093/pch/16.1.31","title":"FluMist vaccine: Questions and answers – summary","year":2011,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Canadian Paediatric Society","funders":"","keywords":"Medicine; Virology","score_opus":0.01677290433257622,"score_gpt":0.272065765618933,"score_spread":0.25529286128635675,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W200091442","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6733254,0.03764047,0.001516314,0.086494476,0.0035753853,0.0032348495,0.00021856715,0.0014616636,0.19253288],"genre_scores_gemma":[0.9713948,0.012522821,0.00069917657,0.014026245,0.00089711876,0.00002661702,0.000037039234,0.000041054383,0.0003551467],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998937,0.000057237496,0.000290546,0.00024768908,0.00014163705,0.0003259076],"domain_scores_gemma":[0.99906164,0.00004073183,0.00009590078,0.00025139534,0.00006404324,0.00048626342],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002620701,0.00013963816,0.00025074804,0.00022626077,0.00039121392,0.000009495897,0.000049256018,0.000096316224,0.00006150925],"category_scores_gemma":[0.0000841646,0.00012160698,0.000069862974,0.00037265933,0.000038996543,0.00006694258,0.00002944581,0.00035947474,0.000042918487],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041966785,0.00053822785,0.95568305,0.00038001593,0.000056912435,0.000040167495,0.0013497197,0.0000011486444,0.000100633435,0.0021777023,0.028595697,0.011034759],"study_design_scores_gemma":[0.0010348458,0.0005302834,0.884943,0.00006312379,0.00009080494,0.00023123401,0.00009027343,0.000020501382,0.000019956153,0.00019239963,0.11261327,0.0001702758],"about_ca_topic_score_codex":0.00031268017,"about_ca_topic_score_gemma":0.00008222737,"teacher_disagreement_score":0.2980694,"about_ca_system_score_codex":0.0000767367,"about_ca_system_score_gemma":0.00030732734,"threshold_uncertainty_score":0.49589887},"labels":[],"label_agreement":null},{"id":"W2001089917","doi":"10.1186/1471-2180-14-143","title":"Effectiveness of the standard and an alternative set of Streptococcus pneumoniae multi locus sequence typing primers","year":2014,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia; BC Children's Hospital; Calgary Laboratory Services; Alberta Children's Hospital; University of Calgary","funders":"Pfizer Canada; Public Health Agency; Public Health Agency of Canada; Pfizer","keywords":"Biology; Multilocus sequence typing; Typing; Locus (genetics); Genetics; Streptococcus pneumoniae; Parasitology; Computational biology; Microbiology; Gene; Genotype; Bacteria; Zoology","score_opus":0.03127862699583048,"score_gpt":0.32376469155325643,"score_spread":0.292486064557426,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2001089917","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99782276,0.000048792783,0.0013071984,0.000029456585,0.00019404203,0.0004442674,0.000077499586,0.00001386968,0.00006211405],"genre_scores_gemma":[0.99975544,0.0000082281895,0.000120494304,0.000039757713,0.000027617287,0.000011724075,0.00000877687,0.000009111963,0.000018846678],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99895656,0.00048243479,0.00019194912,0.00020281687,0.000028826564,0.00013738348],"domain_scores_gemma":[0.9992184,0.00021776176,0.00014932717,0.00024868015,0.0001213541,0.00004445027],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035188888,0.000106643856,0.00030705807,0.000059311926,0.000055490982,0.0000022963168,0.00008868538,0.000094617804,0.0000071392915],"category_scores_gemma":[0.00014329176,0.00006839732,0.00006321195,0.000091916576,0.00044076008,0.000028213779,0.000057403104,0.00012738766,0.0000015364352],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006129474,0.000028490469,0.18477522,0.00018603583,0.000038572027,4.0109242e-7,0.0001342079,0.000053204803,0.8142415,0.00013524128,0.000002069624,0.00034373408],"study_design_scores_gemma":[0.0019702325,0.0010526387,0.19955489,0.00033803427,0.0000903413,0.000073595416,0.00010128998,0.00013064643,0.7946685,0.000058336846,0.001836601,0.00012489434],"about_ca_topic_score_codex":0.000051385447,"about_ca_topic_score_gemma":0.00009813818,"teacher_disagreement_score":0.019573024,"about_ca_system_score_codex":0.000035577363,"about_ca_system_score_gemma":0.00010769025,"threshold_uncertainty_score":0.27891618},"labels":[],"label_agreement":null},{"id":"W2001437624","doi":"10.1001/archinte.160.9.1294","title":"Azithromycin vs Cefuroxime Plus Erythromycin for Empirical Treatment of Community-Acquired Pneumonia in Hospitalized Patients","year":2000,"lang":"en","type":"article","venue":"Archives of Internal Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":134,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Cefuroxime; Azithromycin; Medicine; Erythromycin; Internal medicine; Community-acquired pneumonia; Pneumonia; Adverse effect; Antibacterial agent; Streptococcus pneumoniae; Surgery; Antibiotics; Microbiology","score_opus":0.030368632850831998,"score_gpt":0.33272120955798623,"score_spread":0.3023525767071542,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2001437624","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9922235,0.00014778491,0.000085939086,0.001577069,0.00016466391,0.0008197218,0.000047236117,0.000026672999,0.0049074204],"genre_scores_gemma":[0.99804586,0.00026719167,0.00021205565,0.00056063896,0.00010506368,0.000067586116,0.00005642614,0.000029067252,0.0006561055],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99826074,0.00019066432,0.00083849113,0.00018894718,0.00024003189,0.00028114958],"domain_scores_gemma":[0.9984736,0.0006593316,0.00020339142,0.00042018935,0.00006875992,0.00017475321],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011796865,0.00024972876,0.00097210746,0.00034844587,0.000067382614,0.0000024285928,0.0001762221,0.000072495735,0.00024813178],"category_scores_gemma":[0.00019750517,0.00017419369,0.00023267535,0.00018725042,0.0005958563,0.0000500549,0.000029721428,0.00015644862,0.0000054448624],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006601762,0.005943566,0.7013656,0.00050358125,0.00059521775,0.00004883957,0.029477386,0.000037777267,0.1592396,0.000042893742,0.0004310941,0.09571271],"study_design_scores_gemma":[0.019149782,0.02303419,0.94068503,0.001226678,0.00018905604,0.00004064783,0.00039239333,0.0002627088,0.0063696015,0.00040025983,0.008093631,0.00015602336],"about_ca_topic_score_codex":0.0008187174,"about_ca_topic_score_gemma":0.000074043244,"teacher_disagreement_score":0.23931946,"about_ca_system_score_codex":0.00008626682,"about_ca_system_score_gemma":0.00008075865,"threshold_uncertainty_score":0.7103412},"labels":[],"label_agreement":null},{"id":"W2001758641","doi":"10.1002/ppul.21243","title":"Community‐acquired <i>Moraxella catarrhalis</i> pneumonia in previously healthy children","year":2010,"lang":"en","type":"article","venue":"Pediatric Pulmonology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Stollery Children's Hospital; University of Alberta","funders":"","keywords":"Moraxella catarrhalis; Medicine; Pneumonia; Community-acquired pneumonia; Moraxella (Branhamella) catarrhalis; Sputum; Sputum culture; Moraxella; Bacteremia; Pediatrics; Immunology; Internal medicine; Haemophilus influenzae; Microbiology; Pathology; Antibiotics; Tuberculosis; Biology","score_opus":0.011424657801694625,"score_gpt":0.2762312484973813,"score_spread":0.2648065906956867,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2001758641","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9892145,0.00041225844,0.000008765953,0.006802117,0.00084458257,0.000646086,0.00001756664,0.00018787089,0.0018662895],"genre_scores_gemma":[0.9951706,0.0006106079,0.000073011965,0.0028964358,0.00088090915,0.00008897827,0.00007585302,0.000038820344,0.00016477233],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9980337,0.0002826439,0.0005292366,0.00033664342,0.00015049304,0.0006672888],"domain_scores_gemma":[0.9985129,0.00014710978,0.00015793451,0.0007991324,0.00007726948,0.00030564924],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00051976176,0.00025020266,0.0005077585,0.00055224966,0.00027438143,0.000016766004,0.0002906372,0.00042958866,0.00009654141],"category_scores_gemma":[0.0002616336,0.00023164695,0.00012115157,0.00070732133,0.00016255028,0.00009053173,0.00012549726,0.0015160257,0.00026197016],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006188889,0.00068149524,0.98270833,0.00006148954,0.000020645204,0.00007028429,0.00026412358,0.0000033164586,0.01312862,0.0001183739,0.0010580284,0.0018233809],"study_design_scores_gemma":[0.0016111459,0.00068450236,0.9845342,0.0000069137877,0.00012665852,0.0013626806,0.0000396155,0.00002271712,0.00012495325,0.00027963624,0.010950832,0.0002561397],"about_ca_topic_score_codex":0.0012430389,"about_ca_topic_score_gemma":0.001601658,"teacher_disagreement_score":0.013003667,"about_ca_system_score_codex":0.000072355266,"about_ca_system_score_gemma":0.00036486177,"threshold_uncertainty_score":0.94462883},"labels":[],"label_agreement":null},{"id":"W2003122243","doi":"10.1002/ebch.76","title":"Summary of ‘Antibiotics for community acquired pneumonia in children’","year":2006,"lang":"en","type":"article","venue":"Evidence-Based Child Health A Cochrane Review Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Cochrane collaboration; Systematic review; Pneumonia; Community-acquired pneumonia; Intensive care medicine; Alternative medicine; Family medicine; MEDLINE; Pathology; Internal medicine; Political science; Law; Cochrane Library","score_opus":0.04194008206700226,"score_gpt":0.36436584268684064,"score_spread":0.32242576061983835,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003122243","genre_codex":"review","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.21552663,0.6830012,0.00073346973,0.09631281,0.0003745364,0.0036740608,0.000067354245,0.00006890809,0.00024099177],"genre_scores_gemma":[0.6783277,0.30227673,0.0005058129,0.018202117,0.000547768,0.0000109520615,0.0000549097,0.00004352859,0.000030504856],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9959071,0.0009889002,0.0017913954,0.00021914887,0.00050855806,0.0005848603],"domain_scores_gemma":[0.99709374,0.00061407674,0.0009733612,0.00057273085,0.00038455147,0.00036152083],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004039393,0.00029294856,0.0013616483,0.00038640332,0.0006519449,0.000020779828,0.0002688644,0.0001282997,0.000047817317],"category_scores_gemma":[0.0009465499,0.00023528133,0.00054060185,0.0006871962,0.00015968591,0.00018482428,0.000029140012,0.0010512808,0.0000071951163],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006032458,0.0043625324,0.84919715,0.084433936,0.0002323367,0.00006561798,0.0001298949,0.00048542602,0.0062307008,0.00033050292,0.022021672,0.031906966],"study_design_scores_gemma":[0.004362267,0.0025812576,0.6962879,0.27869487,0.00038125776,0.0024070165,0.000021319209,0.00011196771,0.0007252142,0.00010795511,0.013951571,0.00036740702],"about_ca_topic_score_codex":0.00029662703,"about_ca_topic_score_gemma":0.0001433716,"teacher_disagreement_score":0.46280104,"about_ca_system_score_codex":0.0003212924,"about_ca_system_score_gemma":0.0016118488,"threshold_uncertainty_score":0.9594494},"labels":[],"label_agreement":null},{"id":"W2003192150","doi":"10.1097/mcp.0000000000000163","title":"Respiratory tract infections in community and healthcare settings","year":2015,"lang":"en","type":"editorial","venue":"Current Opinion in Pulmonary Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Medicine; University hospital; Suite; Health care; Family medicine; Respiratory tract infections; Library science; Internal medicine; Respiratory system","score_opus":0.08622782708393581,"score_gpt":0.4137699671644028,"score_spread":0.327542140080467,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003192150","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.011083821,0.03106395,0.0000036486908,0.005723863,0.9492807,0.00135534,0.00018374792,0.00016559081,0.001139349],"genre_scores_gemma":[0.042914137,0.01726318,0.000005748799,0.00050796894,0.93543357,0.00052435335,0.0030179282,0.00017468007,0.0001584155],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99562556,0.001032322,0.0012400874,0.0006068975,0.0009492955,0.00054581603],"domain_scores_gemma":[0.9967066,0.0011602953,0.00037951348,0.00075062225,0.0004415352,0.0005614072],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0026694494,0.00056942774,0.0012633296,0.0015492883,0.00025039946,0.00001535832,0.0002086505,0.0010418547,0.00003493737],"category_scores_gemma":[0.0030909025,0.000495273,0.000102458594,0.0010162074,0.0004912942,0.00017259318,0.00016686687,0.0071396637,0.000017262773],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010708708,0.0021628565,0.08378079,0.0044481773,0.000022241153,0.000049327424,0.0008084808,0.0000032016765,0.00006852823,0.000025989906,0.89995533,0.008568009],"study_design_scores_gemma":[0.0030766826,0.0018397728,0.039706446,0.011932079,0.00005407948,0.0001259814,0.0005495821,0.000025752937,3.6075912e-7,0.00026708655,0.942067,0.00035515585],"about_ca_topic_score_codex":0.000821781,"about_ca_topic_score_gemma":0.00015313967,"teacher_disagreement_score":0.04407434,"about_ca_system_score_codex":0.00078225223,"about_ca_system_score_gemma":0.0013938347,"threshold_uncertainty_score":0.9997499},"labels":[],"label_agreement":null},{"id":"W2003353940","doi":"10.1016/j.carres.2007.12.007","title":"A polysaccharide of Alloiococcus otitidis, a new pathogen of otitis media: chemical structure and synthesis of a neoglycoconjugate thereof","year":2007,"lang":"en","type":"article","venue":"Carbohydrate Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Chemistry; Glycoconjugate; Carbodiimide; Capsule; Polysaccharide; Conjugate; Trisaccharide; Glucuronic acid; Bovine serum albumin; Biochemistry; Stereochemistry","score_opus":0.0341832931244499,"score_gpt":0.33232828091416483,"score_spread":0.29814498778971493,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003353940","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979519,0.00046535226,0.000022727863,0.00027022837,0.000057526908,0.00040216924,0.00012344647,0.000015804952,0.0006908368],"genre_scores_gemma":[0.9994157,0.00022776227,0.00012429076,0.000024299161,0.000113826565,0.000009775002,0.0000053135714,0.000027439326,0.00005158935],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980565,0.00011873873,0.0005217477,0.00027100704,0.0006043941,0.0004276235],"domain_scores_gemma":[0.99786454,0.0006933712,0.00013840063,0.0004059534,0.0005381211,0.00035962756],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008140839,0.0001534248,0.00056021503,0.0004901794,0.000044623135,0.0000069127327,0.00015395276,0.0002269695,0.00012861846],"category_scores_gemma":[0.0011699975,0.000121885634,0.00011710632,0.0008950983,0.00058933196,0.00005017363,0.00011570237,0.00040871926,0.000002748855],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001465523,0.00011321616,0.01524749,0.00031465938,0.00013666379,0.00007033782,0.0005500514,9.113182e-7,0.97956467,0.00037347467,0.00006450839,0.0034174793],"study_design_scores_gemma":[0.000787298,0.00023630097,0.013089219,0.0003237842,0.0001019803,0.000054236207,0.00031169178,0.000022611273,0.9842721,0.00050223456,0.0001994455,0.000099099736],"about_ca_topic_score_codex":0.00083203346,"about_ca_topic_score_gemma":0.000121142024,"teacher_disagreement_score":0.0047074426,"about_ca_system_score_codex":0.000049497972,"about_ca_system_score_gemma":0.0005223496,"threshold_uncertainty_score":0.49703518},"labels":[],"label_agreement":null},{"id":"W2003639415","doi":"10.1016/j.ccm.2004.10.005","title":"Antimicrobial Resistance and Treatment of Community-Acquired Pneumonia","year":2005,"lang":"en","type":"review","venue":"Clinics in Chest Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Streptococcus pneumoniae; Community-acquired pneumonia; Pneumonia; Intensive care medicine; Antimicrobial; Intensive care unit; Antibiotic resistance; Pneumococcal pneumonia; Pneumococcal infections; Antibiotics; Internal medicine; Microbiology","score_opus":0.15836594750443989,"score_gpt":0.4381165683749858,"score_spread":0.2797506208705459,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003639415","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.002944172,0.99275476,0.0000017608637,0.0010757748,0.00046653007,0.00093286554,0.000042221465,0.000040368282,0.0017415261],"genre_scores_gemma":[0.0007379225,0.99670476,0.00007112305,0.00033087668,0.00074070314,0.00005873171,0.00012530223,0.000061545106,0.0011690395],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9972431,0.00040303616,0.00158331,0.00030212812,0.000188275,0.00028016235],"domain_scores_gemma":[0.9970914,0.0011573167,0.0006059849,0.0008677926,0.00008682111,0.0001906489],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000687021,0.0004769024,0.0034438942,0.0004471273,0.00011187087,0.000004815908,0.00015909926,0.00055014866,0.00003435277],"category_scores_gemma":[0.00041113357,0.00032839167,0.00029820914,0.0005003179,0.0007740933,0.00003151091,0.000054517408,0.00063554116,0.000012865498],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003821774,0.0010746163,0.00057911087,0.015422763,0.00022225591,0.000100674784,0.00079602416,1.5926531e-7,0.00008332264,0.000033778608,0.00036715172,0.98128194],"study_design_scores_gemma":[0.0022433426,0.00097370317,0.0012259631,0.027074847,0.001468164,0.00019370922,0.00007470977,8.011754e-7,0.000002351911,0.000012637418,0.9665254,0.00020440783],"about_ca_topic_score_codex":0.000034521996,"about_ca_topic_score_gemma":0.00021488825,"teacher_disagreement_score":0.9810775,"about_ca_system_score_codex":0.00028509213,"about_ca_system_score_gemma":0.00041108328,"threshold_uncertainty_score":0.9999168},"labels":[],"label_agreement":null},{"id":"W2003956353","doi":"10.1197/j.aem.2007.02.026","title":"Community-acquired Pneumonia in North American Emergency Departments: Drug Resistance and Treatment Success with Clarithromycin","year":2007,"lang":"en","type":"article","venue":"Academic Emergency Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University; Vancouver General Hospital; Queen Elizabeth II Health Sciences Centre; University of Alberta Hospital; Alberta Hospital Edmonton","funders":"","keywords":"Medicine; Sputum; Pneumonia severity index; Clarithromycin; Community-acquired pneumonia; Internal medicine; Pneumonia; Streptococcus pneumoniae; Penicillin; Sputum culture; Erythromycin; Prospective cohort study; Drug resistance; Confidence interval; Emergency department; Antibiotics; Antibiotic resistance; Microbiology; Tuberculosis; Pathology; Biology","score_opus":0.03185235889611145,"score_gpt":0.341680457167227,"score_spread":0.30982809827111557,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003956353","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98809576,0.0027620033,0.0000796283,0.005551549,0.0004570466,0.0007540703,0.000010963662,0.000119360855,0.0021695935],"genre_scores_gemma":[0.97844267,0.01804512,0.00005057109,0.00045581217,0.00033403106,0.00009269967,0.00006714201,0.000053913263,0.002458017],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9969319,0.00023235807,0.0012313676,0.00045975327,0.0004562287,0.00068840466],"domain_scores_gemma":[0.99832493,0.00010022762,0.00038935881,0.000572965,0.00013510385,0.0004774151],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008003365,0.00044422672,0.0007788329,0.00043436294,0.00036478887,8.258814e-7,0.00020328643,0.00013336672,0.00018815412],"category_scores_gemma":[0.00012116678,0.00031249144,0.00006611031,0.0017874436,0.0005130473,0.00016366594,0.000053042677,0.0008155403,0.0000093091685],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028403528,0.0002963176,0.9815665,0.00008738443,0.00014263859,0.0000733302,0.0025333168,0.00000404572,0.0129807815,0.000049357295,0.0008700747,0.0011122542],"study_design_scores_gemma":[0.0023138158,0.0011223672,0.968335,0.00015105726,0.000253099,0.00006008827,0.0020040132,0.0000076842425,0.000324096,0.000044393804,0.0250763,0.00030812674],"about_ca_topic_score_codex":0.00196016,"about_ca_topic_score_gemma":0.08871804,"teacher_disagreement_score":0.08675788,"about_ca_system_score_codex":0.00027873975,"about_ca_system_score_gemma":0.000086360254,"threshold_uncertainty_score":0.9999327},"labels":[],"label_agreement":null},{"id":"W2004002747","doi":"10.1097/ccm.0000000000000925","title":"Hospitals With the Highest Intensive Care Utilization Provide Lower Quality Pneumonia Care to the Elderly*","year":2015,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Heart, Lung, and Blood Institute; National Institute on Aging; Agency for Healthcare Research and Quality","keywords":"Medicine; Pneumonia; Emergency medicine; Mortality rate; Intensive care; Sepsis; Intensive care medicine; Retrospective cohort study; Internal medicine","score_opus":0.061388161109937396,"score_gpt":0.37647867289778153,"score_spread":0.31509051178784414,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2004002747","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6483792,0.0070079835,0.0009026183,0.33237645,0.0017162919,0.0019776528,0.00005809865,0.00022585152,0.0073558227],"genre_scores_gemma":[0.9806743,0.000011903602,0.000019337245,0.017877562,0.0009824961,0.00016729957,0.0000701278,0.000040627594,0.0001563282],"study_design_codex":"qualitative","study_design_gemma":"qualitative","domain_scores_codex":[0.99777156,0.00021643932,0.00035824013,0.00043399588,0.0008012889,0.00041848293],"domain_scores_gemma":[0.9919135,0.00035338185,0.000053876924,0.0007717032,0.006344203,0.0005633172],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024018588,0.00029142905,0.00045821603,0.00008884775,0.0003551935,0.00003774924,0.00021465746,0.00014009317,0.000046767364],"category_scores_gemma":[0.0043156017,0.00012880938,0.00009088296,0.0004937542,0.00082042924,0.00007960479,0.00008133448,0.0004972885,0.00007793133],"study_design_candidate":"qualitative","study_design_consensus":"qualitative","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019544978,0.0003999061,0.2093045,0.0053274487,0.0004778075,0.0018900792,0.51708084,0.00014731329,0.014861031,0.010834613,0.1248454,0.11287659],"study_design_scores_gemma":[0.0017483884,0.008371525,0.056501616,0.00062876643,0.00065373734,0.00015200832,0.5764037,0.0000051292704,0.00055619306,0.000038062553,0.35463768,0.00030320234],"about_ca_topic_score_codex":0.00021839587,"about_ca_topic_score_gemma":0.00055184576,"teacher_disagreement_score":0.3322951,"about_ca_system_score_codex":0.00027707816,"about_ca_system_score_gemma":0.0003728426,"threshold_uncertainty_score":0.5252694},"labels":[],"label_agreement":null},{"id":"W2004003656","doi":"10.1128/aac.04652-14","title":"Safety and Pharmacokinetics of Solithromycin in Subjects with Hepatic Impairment","year":2015,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Celerion (Canada)","funders":"","keywords":"Medicine; Pharmacokinetics; Adverse effect; Internal medicine; Cohort; Diarrhea; Population; Gastroenterology; Toxicity","score_opus":0.015677797573348504,"score_gpt":0.2750619069029889,"score_spread":0.25938410932964034,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2004003656","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966135,0.000022879873,0.000035815054,0.0027326855,0.0000370341,0.00024341562,0.000005159359,0.00001091659,0.00029858045],"genre_scores_gemma":[0.9949242,0.00094662287,0.00010993485,0.003885505,0.000028633092,0.0000018684283,0.0000036951885,0.000012395685,0.00008713871],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99948865,0.000017215842,0.00016242072,0.00012896881,0.00007448927,0.00012822778],"domain_scores_gemma":[0.99973136,0.000006796269,0.000048292284,0.00007794222,0.000037139656,0.00009844535],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000079948324,0.00009948789,0.00021604008,0.00006346486,0.000024607922,0.0000068216323,0.000020103555,0.00003994242,0.000015463125],"category_scores_gemma":[0.000002713904,0.00007076568,0.000019296254,0.00010336421,0.00007856455,0.00003124215,0.0000117603695,0.00006780645,9.208027e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00068044156,0.0005625106,0.9295881,0.00016024955,0.00010374,0.000037031168,0.0015448125,0.000012924132,0.06208187,0.000011725054,0.0018937321,0.0033229038],"study_design_scores_gemma":[0.0141046755,0.0013470339,0.92709297,0.0002688687,0.00008240404,0.00023007952,0.00018896504,0.00026615857,0.034099355,0.000017184204,0.022100793,0.00020152701],"about_ca_topic_score_codex":0.000073855204,"about_ca_topic_score_gemma":0.000021055177,"teacher_disagreement_score":0.027982512,"about_ca_system_score_codex":0.000020705726,"about_ca_system_score_gemma":0.000052938438,"threshold_uncertainty_score":0.28857407},"labels":[],"label_agreement":null},{"id":"W2004627090","doi":"10.1093/jac/dkr096","title":"FOCUS 1: a randomized, double-blinded, multicentre, Phase III trial of the efficacy and safety of ceftaroline fosamil versus ceftriaxone in community-acquired pneumonia","year":2011,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":196,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Mount Sinai Hospital","funders":"","keywords":"Ceftriaxone; Medicine; Randomized controlled trial; Pneumonia; Double blinded; Internal medicine; Antibiotics; Alternative medicine; Pathology; Microbiology; Biology; Placebo","score_opus":0.04942358390690351,"score_gpt":0.31791845997700124,"score_spread":0.26849487607009775,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2004627090","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959432,0.000111262605,0.00008176149,0.0012919006,0.0007153934,0.0014645072,0.000011721325,0.000008232752,0.0003720483],"genre_scores_gemma":[0.9980168,0.0011809665,0.00027776812,0.00027446233,0.00019575041,0.000003178926,0.0000015247592,0.00002654182,0.000023050952],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.99741566,0.00047057302,0.0015052604,0.00011904777,0.00026073327,0.00022869642],"domain_scores_gemma":[0.99749416,0.00048647958,0.0012469684,0.00036202688,0.00029251393,0.000117843374],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014359454,0.00022962669,0.0014027582,0.0003060888,0.000115679235,0.0000090923295,0.00024523507,0.00018324044,0.00003864883],"category_scores_gemma":[0.00021474676,0.00014691404,0.0005135472,0.00038224825,0.0004932203,0.00011211528,0.00004900244,0.0005620489,5.0619605e-7],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.69431996,0.0034694574,0.00020651564,0.000046643996,0.00042013254,0.000010299247,0.0020712763,0.000007237099,0.2979056,0.000012997126,0.00004703624,0.0014828632],"study_design_scores_gemma":[0.86818194,0.0019040712,0.00089669623,0.00034251343,0.00037637877,0.000119562515,0.00014935619,0.000021328879,0.12743756,0.000016908753,0.00044173855,0.000111912705],"about_ca_topic_score_codex":0.00025780775,"about_ca_topic_score_gemma":0.00006483654,"teacher_disagreement_score":0.17386201,"about_ca_system_score_codex":0.00005863009,"about_ca_system_score_gemma":0.00024433524,"threshold_uncertainty_score":0.5990981},"labels":[],"label_agreement":null},{"id":"W2004825422","doi":"10.3402/ijch.v65i4.18120","title":"Impact of a mass immunization campaign to cotrol an outbreak of severe respiratory infections in Nunavik, northern Canada","year":2006,"lang":"en","type":"article","venue":"International Journal of Circumpolar Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Nunavik Regional Board of Health and Social Services; Université du Québec; Centre hospitalier universitaire de Québec; Institut National de Santé Publique du Québec; Université Laval","funders":"","keywords":"Outbreak; Serotype; Medicine; Vaccination; Incidence (geometry); Streptococcus pneumoniae; Immunization; Pneumonia; Epidemiology; Pneumococcal polysaccharide vaccine; Population; Herd immunity; Environmental health; Pediatrics; Demography; Pneumococcal disease; Virology; Immunology; Biology; Internal medicine; Microbiology; Antibiotics","score_opus":0.011138073052926706,"score_gpt":0.3221753498055092,"score_spread":0.3110372767525825,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2004825422","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971181,0.00015129159,0.0009528204,0.00089648896,0.00039593648,0.00020105891,0.000109082015,0.00000646634,0.00016871968],"genre_scores_gemma":[0.9990043,0.000018674311,0.000049707698,0.0006450752,0.00023494475,0.0000026326022,0.000017046821,0.000017266577,0.000010371634],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9979278,0.00017040443,0.0010239752,0.0001059208,0.0005918102,0.0001801335],"domain_scores_gemma":[0.9975842,0.000069827904,0.0007455432,0.00017393938,0.0012057939,0.00022067595],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046046785,0.00012182645,0.00039191352,0.0006718056,0.00004579385,0.000009792982,0.00017020656,0.000069091315,0.000039201634],"category_scores_gemma":[0.00019234524,0.00010728056,0.0001519631,0.00036452504,0.000033637956,0.00017875091,0.000014079177,0.00030724006,0.0000011157657],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000107112624,0.0005245308,0.95155424,0.000031552943,0.00011090483,0.00003362301,0.00032892922,0.015333556,0.030758196,0.00006207862,0.00017995982,0.0009752995],"study_design_scores_gemma":[0.0014574252,0.0013168046,0.99457526,0.00025121783,0.00002108689,0.00033862295,0.00013344377,0.0000677253,0.00033186667,0.00009871519,0.0013246126,0.00008320489],"about_ca_topic_score_codex":0.37717342,"about_ca_topic_score_gemma":0.46254712,"teacher_disagreement_score":0.08537372,"about_ca_system_score_codex":0.0016174567,"about_ca_system_score_gemma":0.0069469744,"threshold_uncertainty_score":0.99868274},"labels":[],"label_agreement":null},{"id":"W2005161350","doi":"10.1016/j.jval.2012.03.1309","title":"PIN33 Pharmacoeconomic Evaluation of 13-Valent Pneumococcal Conjugate and 23-Valent Pneumococcal Polysaccharide Vaccine in Canadian Adults","year":2012,"lang":"en","type":"article","venue":"Value in Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta; University of Calgary; Pfizer (Canada); Institute of Health Economics","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Pneumococcal polysaccharide vaccine; Pneumococcal pneumonia; Streptococcus pneumoniae; Vaccination; Population; Herd immunity; Pneumococcal disease; Conjugate vaccine; Pneumonia; Pediatrics; Meningitis; Serotype; Intensive care medicine; Immunology; Internal medicine; Environmental health; Immunization; Biology; Antibiotics; Microbiology","score_opus":0.041745774133618914,"score_gpt":0.33577031721905665,"score_spread":0.29402454308543774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005161350","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9914256,0.002013501,0.0000015022591,0.0038450365,0.0006559727,0.0016533908,0.00004461739,0.000024616242,0.00033581757],"genre_scores_gemma":[0.9978148,0.00084018277,0.000013737259,0.000916286,0.00023104026,0.00011889562,0.000019358333,0.000029711917,0.00001598615],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99705905,0.00048427787,0.0009681878,0.00034596235,0.00028877278,0.0008537623],"domain_scores_gemma":[0.9983089,0.000106522086,0.0002336704,0.00027351984,0.0001043439,0.000973076],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002984687,0.00022823451,0.00055347406,0.000755426,0.00009276564,0.000008590914,0.00008085374,0.00013998663,0.000101410864],"category_scores_gemma":[0.0001623284,0.00022163462,0.00007694474,0.00031157202,0.00004888302,0.00017709655,0.000032495496,0.00042841592,0.000038885188],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000121116915,0.00038037047,0.9742937,0.00052363664,0.000032666256,0.000008572381,0.0012604151,0.0015224708,0.01718423,0.00017156304,0.00007178664,0.0044294684],"study_design_scores_gemma":[0.004729442,0.00036157374,0.9710456,0.00051398407,0.00006528999,0.00010107636,0.00014926256,0.02011789,0.001024042,0.00004948025,0.0016513984,0.0001909534],"about_ca_topic_score_codex":0.29122788,"about_ca_topic_score_gemma":0.09816076,"teacher_disagreement_score":0.19306712,"about_ca_system_score_codex":0.0014297478,"about_ca_system_score_gemma":0.0018296422,"threshold_uncertainty_score":0.91829544},"labels":[],"label_agreement":null},{"id":"W2005265212","doi":"10.1016/s0924-8579(03)00092-x","title":"In vitro susceptibility of 4903 bacterial isolates to gemifloxacin—an advanced fluoroquinolone","year":2003,"lang":"en","type":"article","venue":"International Journal of Antimicrobial Agents","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Royal University Hospital; St. Paul's Hospital","funders":"","keywords":"Gemifloxacin; Microbiology; In vitro; Ciprofloxacin; Medicine; Biology; Antibiotics; Genetics","score_opus":0.016279920036908965,"score_gpt":0.3127308709305468,"score_spread":0.2964509508936378,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005265212","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959021,0.0000068632175,0.00017940857,0.0012773675,0.0022694217,0.00014763,0.000029284129,0.000006009008,0.00018186547],"genre_scores_gemma":[0.99711734,0.000027396623,0.0014838529,0.0010355945,0.00025362385,0.0000010030151,0.000007595495,0.0000123728005,0.000061201565],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998714,0.000069719164,0.0006661948,0.0001473044,0.00023937893,0.00016340174],"domain_scores_gemma":[0.99888337,0.000025916424,0.0002761191,0.0001298345,0.0005428039,0.0001419607],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026503968,0.000119790595,0.00032137288,0.00037266986,0.000023723014,0.00001791513,0.000189963,0.00007686728,0.00030887127],"category_scores_gemma":[0.000238813,0.00010494901,0.00015708528,0.00014826703,0.000049079517,0.00027562826,0.000031017942,0.00020034196,0.000018632063],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001127415,0.0007278805,0.011346116,0.000013290908,0.00010357456,0.00010105904,0.00021250873,0.00013670411,0.9847938,0.000018929,0.0005193023,0.0008994669],"study_design_scores_gemma":[0.0036025073,0.000632559,0.04610491,0.00019170993,0.0000412271,0.0006302023,0.000050696115,0.000011786575,0.9347353,0.000054279317,0.013814739,0.00013006208],"about_ca_topic_score_codex":0.000019268859,"about_ca_topic_score_gemma":0.000018861774,"teacher_disagreement_score":0.050058436,"about_ca_system_score_codex":0.00014410309,"about_ca_system_score_gemma":0.00016086147,"threshold_uncertainty_score":0.42796963},"labels":[],"label_agreement":null},{"id":"W2005614248","doi":"10.1111/j.1365-2753.2007.00873.x","title":"Clinical diagnosis of pneumonia, typical of experts","year":2008,"lang":"en","type":"article","venue":"Journal of Evaluation in Clinical Practice","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Medicine; Pneumonia; Intensive care medicine; Physical examination; Auscultation; Pre- and post-test probability; Medical history; Chest pain; Chest radiograph; Physical therapy; Radiography; Pediatrics; Surgery; Radiology; Internal medicine","score_opus":0.20986739744204494,"score_gpt":0.5390650288141542,"score_spread":0.3291976313721092,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005614248","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9891526,0.00047825038,0.00013706027,0.006661341,0.0012229736,0.00027079234,0.0000016382714,0.000004456343,0.0020708942],"genre_scores_gemma":[0.99305063,0.0031468556,0.0018384446,0.0012888375,0.000622849,0.000008991573,8.207568e-7,0.0000117145555,0.00003082898],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99258703,0.0019298975,0.0040493133,0.00017425392,0.0011272605,0.00013226352],"domain_scores_gemma":[0.9822632,0.01213909,0.0026612545,0.00029683716,0.0024277896,0.00021180075],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.01305896,0.0001054811,0.0008310408,0.00023317945,0.000039483966,0.0000034971836,0.00010477279,0.0002913227,0.0002864458],"category_scores_gemma":[0.0935994,0.0000811525,0.00053142075,0.00035942878,0.00033196836,0.00035076405,0.00003330551,0.0008780786,0.00001410333],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012864535,0.005102597,0.9722931,0.0000320249,0.00021400914,0.00014945208,0.0001844669,0.0001130429,0.0007551893,0.00005015735,0.0025326936,0.017286863],"study_design_scores_gemma":[0.0043427576,0.0033240388,0.9629241,0.00025692268,0.0006172982,0.0010119369,0.000245431,0.00037489386,0.00018959596,0.00017191365,0.026463911,0.00007716492],"about_ca_topic_score_codex":0.000008645794,"about_ca_topic_score_gemma":0.000003964184,"teacher_disagreement_score":0.08054044,"about_ca_system_score_codex":0.00006702989,"about_ca_system_score_gemma":0.0009977374,"threshold_uncertainty_score":0.9140356},"labels":[],"label_agreement":null},{"id":"W2005638733","doi":"10.1016/j.vaccine.2012.10.080","title":"Safety and immunogenicity of a pneumococcal histidine triad protein D vaccine candidate in adults","year":2012,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":72,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"Sanofi Pasteur","keywords":"Immunogenicity; Medicine; Adverse effect; Streptococcus pneumoniae; Vaccine safety; Cohort; Internal medicine; Pneumococcal vaccine; Immunology; Immunization; Antibody; Biology; Microbiology","score_opus":0.008704454976359802,"score_gpt":0.2532495590030781,"score_spread":0.2445451040267183,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005638733","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99588025,0.0011875383,0.000030987954,0.0014205265,0.00012698091,0.0008370451,0.000023919763,0.000043393964,0.0004493399],"genre_scores_gemma":[0.9990565,0.0002341664,0.000049501472,0.000091674054,0.00018197531,0.00004109852,0.00002101053,0.000021374293,0.00030265845],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986598,0.00006983864,0.00057850993,0.00020483826,0.00013394083,0.00035306785],"domain_scores_gemma":[0.9992181,0.000046521727,0.00014606425,0.00030464662,0.00007803528,0.00020659794],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039005015,0.00018834286,0.0005371381,0.00024545504,0.000060138354,0.0000035938576,0.00005863511,0.00011941898,0.00018114643],"category_scores_gemma":[0.0001956327,0.00014559906,0.000080755904,0.00040368806,0.000011587977,0.00012123148,0.000062805055,0.0002575836,0.000014089483],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0029904193,0.00059337507,0.46075332,0.00025928757,0.00007261476,0.000016697322,0.00025984642,0.0000022210047,0.5320639,0.0001387859,0.00006286919,0.002786676],"study_design_scores_gemma":[0.011012255,0.00059633574,0.9535266,0.0003675688,0.00008423036,0.00016115014,0.000041577536,0.00007740875,0.021105254,0.000014101488,0.0128460955,0.00016738949],"about_ca_topic_score_codex":0.00039510682,"about_ca_topic_score_gemma":0.0002087074,"teacher_disagreement_score":0.5109586,"about_ca_system_score_codex":0.000092789756,"about_ca_system_score_gemma":0.00006725724,"threshold_uncertainty_score":0.59373575},"labels":[],"label_agreement":null},{"id":"W2005868475","doi":"10.1097/inf.0b013e31829be1bb","title":"Necrotizing Pneumonia in Children","year":2013,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Society of Microbiologists","funders":"","keywords":"Fusobacterium nucleatum; Pneumonia; Medicine; Chest radiograph; Streptococcus pneumoniae; Panton–Valentine leukocidin; Fusobacterium; Community-acquired pneumonia; Staphylococcus aureus; Intensive care medicine; Microbiology; Internal medicine; Radiography; Surgery; Methicillin-resistant Staphylococcus aureus; Bacteria; Antibiotics; Biology","score_opus":0.005470554019784981,"score_gpt":0.22929391077302463,"score_spread":0.22382335675323967,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005868475","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948388,0.0003448775,0.000044887624,0.0022346629,0.00038187654,0.00058370054,0.0000026985394,0.00008573054,0.0014828021],"genre_scores_gemma":[0.9960346,0.0005006321,0.0000070059427,0.0012378423,0.0019667083,0.000056067616,0.0000014626596,0.000027427677,0.00016823987],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99865115,0.00013021156,0.00037042453,0.00016085117,0.0002779172,0.00040944794],"domain_scores_gemma":[0.9989032,0.00007939078,0.00014818579,0.0002581238,0.00012931351,0.00048176193],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027193062,0.00017843093,0.00021093457,0.00038528454,0.00046006514,0.00012334758,0.00009632756,0.00006671593,0.00045076362],"category_scores_gemma":[0.0002227754,0.00011213109,0.00021349922,0.00056952605,0.0000548366,0.00021367965,0.000044682114,0.0008157876,0.00052791403],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009769444,0.00022880413,0.9972749,0.000012158762,0.00004058289,0.000057592424,0.00006409371,0.0001695498,0.00038570928,0.0000198655,0.0010093439,0.0007276736],"study_design_scores_gemma":[0.0010203286,0.00010391675,0.9925679,0.00001414117,0.00026466654,0.004547839,0.000024615709,0.000113744645,0.0000030725096,0.00097478525,0.00023029443,0.00013468359],"about_ca_topic_score_codex":0.00008886807,"about_ca_topic_score_gemma":0.0000049955834,"teacher_disagreement_score":0.004706945,"about_ca_system_score_codex":0.00014577298,"about_ca_system_score_gemma":0.0003282202,"threshold_uncertainty_score":0.6785443},"labels":[],"label_agreement":null},{"id":"W2006929330","doi":"10.1136/bmj.c2916","title":"Community acquired pneumonia","year":2010,"lang":"en","type":"editorial","venue":"BMJ","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Pneumonia; Computer science; Community-acquired pneumonia; Medicine; Data science; Intensive care medicine; World Wide Web; Internal medicine","score_opus":0.02238218832029789,"score_gpt":0.3438358859385813,"score_spread":0.3214536976182834,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2006929330","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.006505691,0.000035780016,0.0000049891673,0.0028094107,0.966286,0.00055541494,0.00013057068,0.0002505968,0.02342156],"genre_scores_gemma":[0.0027225327,0.000037772763,0.00004001118,0.00045848006,0.9815827,0.00011028139,0.0004399573,0.00007532311,0.0145329675],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983373,0.0002085362,0.00039103752,0.00021461933,0.0005570226,0.00029146747],"domain_scores_gemma":[0.99764997,0.00042080996,0.00020598547,0.0011799254,0.00031800158,0.00022532555],"candidate_categories":["research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0006142214,0.00028908573,0.0005596817,0.00016078421,0.00038738447,0.000037421167,0.00024756548,0.0017583813,0.0002156879],"category_scores_gemma":[0.0020171197,0.00024131627,0.00025361695,0.00015022725,0.00016735752,0.000043924774,0.00012878886,0.0032633801,0.0005921853],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002631385,0.00019110361,0.00020543141,0.00015574369,0.000097203316,0.000059525144,0.00007791901,1.6179982e-7,0.021881888,0.000004780144,0.9766628,0.0006370931],"study_design_scores_gemma":[0.00067032047,0.0002717182,0.0023634285,0.00018495171,0.0002249388,0.00005424607,0.000025119283,0.0000022724237,0.0001499869,0.000036559395,0.995776,0.0002404674],"about_ca_topic_score_codex":0.00019455263,"about_ca_topic_score_gemma":0.00024384893,"teacher_disagreement_score":0.021731902,"about_ca_system_score_codex":0.000089734705,"about_ca_system_score_gemma":0.00081334304,"threshold_uncertainty_score":0.9995375},"labels":[],"label_agreement":null},{"id":"W2007170489","doi":"10.1055/s-0029-1202939","title":"<i>Streptococcus pneumoniae</i>: Does Antimicrobial Resistance Matter?","year":2009,"lang":"en","type":"review","venue":"Seminars in Respiratory and Critical Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":127,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Medicine; Streptococcus pneumoniae; Antibiotic resistance; Antibiotics; Penicillin; Antimicrobial; Pneumonia; Drug resistance; Intensive care medicine; Microbiology; Internal medicine; Biology","score_opus":0.02624477474687576,"score_gpt":0.35742520855932297,"score_spread":0.3311804338124472,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2007170489","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0006348865,0.9861921,0.0000036778556,0.0016391291,0.0007274135,0.0012359254,0.000090662834,0.000110034576,0.009366144],"genre_scores_gemma":[0.0016223781,0.9908853,0.000021623979,0.0053302115,0.0011460213,0.00019483817,0.00006660513,0.000101978156,0.0006310305],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9957242,0.00041890185,0.0014192966,0.0011494571,0.0004980536,0.0007901101],"domain_scores_gemma":[0.9975357,0.00061790715,0.00019690367,0.0008512131,0.00022024749,0.0005780083],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004773337,0.0008876418,0.003129392,0.00070189557,0.00025038005,0.00004120622,0.00025524708,0.00091540354,0.00025859117],"category_scores_gemma":[0.0006793157,0.0005764041,0.0004029591,0.00074520713,0.0012787799,0.00010970467,0.00010653598,0.0017325091,0.00006791769],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006853966,0.00038289468,0.0053202435,0.13536206,0.000118020325,0.0051076845,0.0006324883,1.1154436e-7,0.0006000134,0.00060228666,0.01316825,0.8386374],"study_design_scores_gemma":[0.0007484755,0.000657058,0.0004733274,0.087294266,0.0012438851,0.00021758537,0.00034355363,7.903441e-8,0.000016377964,0.00006745132,0.9083859,0.0005520632],"about_ca_topic_score_codex":0.00000417357,"about_ca_topic_score_gemma":0.00003856635,"teacher_disagreement_score":0.8952176,"about_ca_system_score_codex":0.00027198147,"about_ca_system_score_gemma":0.00042685878,"threshold_uncertainty_score":0.9996687},"labels":[],"label_agreement":null},{"id":"W2007265663","doi":"10.1592/phco.27.2.221","title":"Selection of a <i>gyrA</i> Mutation and Treatment Failure with Gatifloxacin in a Patient with <i>Streptococcus pneumoniae</i> with a Preexisting <i>parC</i> Mutation","year":2007,"lang":"en","type":"article","venue":"Pharmacotherapy The Journal of Human Pharmacology and Drug Therapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Health Sciences Centre","funders":"","keywords":"Gatifloxacin; Levofloxacin; Streptococcus pneumoniae; Etest; Mutation; Microbiology; Minimum inhibitory concentration; Medicine; Biology; Antimicrobial; Antibiotics; Gene; Biochemistry","score_opus":0.01225902252073502,"score_gpt":0.3016498785347839,"score_spread":0.2893908560140489,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2007265663","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970983,0.00064557465,0.00021137172,0.0008774632,0.00004046089,0.0009946307,0.0000030903614,0.000018724717,0.00011037719],"genre_scores_gemma":[0.9975375,0.0010453112,0.0001359822,0.0010732056,0.00011724291,0.000040165363,0.0000020513799,0.000028785927,0.000019790159],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985616,0.0002665097,0.0004956268,0.0001819892,0.00024329532,0.00025097118],"domain_scores_gemma":[0.99869,0.0002411788,0.00063362153,0.00007490825,0.00023175983,0.00012852624],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005951556,0.0002589162,0.00040724274,0.00029139518,0.00023593167,0.000014605948,0.0000554936,0.000053361393,0.000038672984],"category_scores_gemma":[0.0000020949174,0.00013405299,0.000045657183,0.00034939157,0.0002843481,0.00016430614,0.0000051051147,0.00036296394,2.0914226e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008295825,0.0007444951,0.06971884,0.00004240856,0.00077376195,0.0003878643,0.009410917,0.00046504167,0.893025,0.0000076217398,0.00007281215,0.017055444],"study_design_scores_gemma":[0.040582236,0.024780355,0.018808728,0.000355093,0.0008879829,0.0105872685,0.0026788616,0.0002451709,0.89777434,0.00006955172,0.0028539232,0.00037648054],"about_ca_topic_score_codex":0.000033761225,"about_ca_topic_score_gemma":0.0003217334,"teacher_disagreement_score":0.050910108,"about_ca_system_score_codex":0.00009125316,"about_ca_system_score_gemma":0.00013619033,"threshold_uncertainty_score":0.5466522},"labels":[],"label_agreement":null},{"id":"W2007336716","doi":"10.1097/inf.0b013e3181ec6245","title":"Vaccine Preventable Community-acquired Pneumonia in Hospitalized Children in Northwest China","year":2010,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Izaak Walton Killam Health Centre; Dalhousie University","funders":"","keywords":"Medicine; Etiology; Mycoplasma pneumoniae; Pneumonia; Community-acquired pneumonia; Moraxella catarrhalis; Pediatrics; Streptococcus pneumoniae; Chest radiograph; Prospective cohort study; Internal medicine","score_opus":0.004805312557941909,"score_gpt":0.24607371266299657,"score_spread":0.24126840010505465,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2007336716","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99592304,0.00015368003,0.0000060422585,0.0015903083,0.0007355041,0.0006887347,0.000020553834,0.000083114515,0.00079903385],"genre_scores_gemma":[0.9976617,0.00051589124,0.000007948018,0.00043960105,0.0011664308,0.000056104956,0.000014827474,0.00004153379,0.00009594264],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99803627,0.00034293823,0.000613966,0.00018497961,0.00030798235,0.0005138931],"domain_scores_gemma":[0.99860716,0.00010682098,0.00025374873,0.00047352706,0.00009564685,0.00046311357],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009666555,0.00027703913,0.00041415534,0.0006422671,0.0007077329,0.00009202493,0.00026764476,0.00012896206,0.00023511211],"category_scores_gemma":[0.00035776015,0.00019446979,0.00023403771,0.001034758,0.000060856346,0.00024992815,0.00009986032,0.0022912172,0.000044261375],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010806687,0.0015069316,0.99642384,0.000031080122,0.000043650885,0.000093701725,0.00032025343,0.00013999674,0.0008837159,0.00001908311,0.00020825857,0.00022142672],"study_design_scores_gemma":[0.0039262488,0.00026341196,0.99239486,0.000028279077,0.00029716254,0.0018088308,0.000030559087,0.00006670132,0.0000067037654,0.00079206144,0.0001736913,0.00021150382],"about_ca_topic_score_codex":0.001141479,"about_ca_topic_score_gemma":0.002226248,"teacher_disagreement_score":0.004028988,"about_ca_system_score_codex":0.00015760181,"about_ca_system_score_gemma":0.0004029324,"threshold_uncertainty_score":0.99543256},"labels":[],"label_agreement":null},{"id":"W2007841313","doi":"10.1097/inf.0b013e31822cca05","title":"Increased Risk of Death in Human Immunodeficiency Virus-infected Children With Pneumococcal Meningitis in South Africa, 2003–2005","year":2011,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Public Health Agency of Canada","keywords":"Meningitis; Medicine; Human immunodeficiency virus (HIV); Virology; Pediatrics; Intensive care medicine; Immunology","score_opus":0.012297696622526997,"score_gpt":0.23066555682496515,"score_spread":0.21836786020243815,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2007841313","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99659187,0.00058375066,0.00008192136,0.000015398395,0.000119013486,0.000641008,0.000058487647,0.00006865087,0.0018399161],"genre_scores_gemma":[0.9992044,0.0003300201,0.000017952625,0.000026912541,0.00029898842,0.000045634377,0.0000062654813,0.000042230524,0.00002758221],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99752706,0.00043857764,0.000731862,0.00027469706,0.0004180307,0.00060976454],"domain_scores_gemma":[0.99833995,0.00007568902,0.00054739945,0.00040136775,0.00023977665,0.0003958327],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00077332644,0.00031161745,0.00046746526,0.0010207263,0.0004232588,0.000031981155,0.00019688037,0.00011571878,0.00026012707],"category_scores_gemma":[0.0003829026,0.00020259539,0.0001919217,0.0016327387,0.0001466868,0.00016530138,0.000056936566,0.0011507029,0.00001969898],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023338119,0.0014020884,0.994817,0.000020196601,0.00011813282,0.00014673815,0.0018322105,0.00019408122,0.0011247314,0.00004536372,0.000017521394,0.000048562553],"study_design_scores_gemma":[0.0036273724,0.00068280916,0.9932908,0.000051745148,0.0009905674,0.00062911614,0.000084818275,0.00006255304,0.00006959727,0.00025513148,0.000014437471,0.0002410881],"about_ca_topic_score_codex":0.00082227425,"about_ca_topic_score_gemma":0.00018609811,"teacher_disagreement_score":0.0033939912,"about_ca_system_score_codex":0.00022449203,"about_ca_system_score_gemma":0.00078018993,"threshold_uncertainty_score":0.82616},"labels":[],"label_agreement":null},{"id":"W2007844772","doi":"10.1016/j.ijid.2008.08.016","title":"Pharmacodynamic target attainment potential of azithromycin, clarithromycin, and telithromycin in serum and epithelial lining fluid of community-acquired pneumonia patients with penicillin-susceptible, intermediate, and resistant Streptococcus pneumoniae","year":2008,"lang":"en","type":"article","venue":"International Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Telithromycin; Azithromycin; Streptococcus pneumoniae; Penicillin; Clarithromycin; Ketolide; Microbiology; Antibiotics; Medicine; Minimum inhibitory concentration; Antibacterial agent; Biology","score_opus":0.007060713150484986,"score_gpt":0.2525710302447757,"score_spread":0.2455103170942907,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2007844772","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99832183,0.0003772539,0.00008651723,0.00025210687,0.00028033377,0.00033729046,0.00029207443,0.000015966958,0.00003659667],"genre_scores_gemma":[0.99861455,0.0009994911,0.000044037337,0.00017229715,0.00010366355,0.000009385235,0.000022792712,0.000027746055,0.0000060201905],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99789417,0.00022639983,0.00093080255,0.0001818196,0.0005609183,0.00020589068],"domain_scores_gemma":[0.99777085,0.0001790815,0.00071456283,0.00015295639,0.0009492188,0.0002333385],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023996686,0.0002579677,0.00063831883,0.00060514035,0.00014957838,0.000023559562,0.00013736983,0.00009410465,0.000030209269],"category_scores_gemma":[0.00015523146,0.00020677198,0.00011574012,0.00017923371,0.0006147998,0.0002578197,0.0001333624,0.00038174787,3.6446332e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00069913926,0.0010857111,0.8477205,0.0001411403,0.00048005744,0.00014492395,0.00065143954,0.00029829566,0.1477204,0.000011325019,0.000012257642,0.0010348064],"study_design_scores_gemma":[0.0076043615,0.0033854044,0.98474926,0.00063431216,0.00024520786,0.00041409835,0.000589609,0.00014330228,0.0019300289,0.00009338353,0.000036887985,0.00017413333],"about_ca_topic_score_codex":0.00011364296,"about_ca_topic_score_gemma":0.00007245399,"teacher_disagreement_score":0.14579037,"about_ca_system_score_codex":0.00014157088,"about_ca_system_score_gemma":0.00023700758,"threshold_uncertainty_score":0.8431916},"labels":[],"label_agreement":null},{"id":"W2009347495","doi":"10.1016/j.ypmed.2013.11.009","title":"Pneumococcal vaccination of the elderly during visits to acute care providers: Who are vaccinated?","year":2013,"lang":"en","type":"article","venue":"Preventive Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Health Services; University of Calgary","funders":"Centers for Disease Control and Prevention; Public Health Agency of Canada; Alberta Health Services","keywords":"Medicine; Vaccination; Pneumococcal vaccination; Acute care; Family medicine; Pneumococcal infections; Pediatrics; Streptococcus pneumoniae; Health care; Virology; Antibiotics","score_opus":0.008195177667994538,"score_gpt":0.2750664148462548,"score_spread":0.2668712371782603,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2009347495","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98505104,0.00034062003,0.0001289876,0.010253441,0.00033708554,0.002105988,0.0000075907997,0.000063240346,0.0017120199],"genre_scores_gemma":[0.9965805,0.00003134907,0.000017535878,0.00038620178,0.00022909211,0.00019221062,0.000006467091,0.000025832178,0.0025308002],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99851584,0.00011099478,0.0004158948,0.00031020204,0.00037254795,0.0002745315],"domain_scores_gemma":[0.9984778,0.00004872612,0.00022672363,0.0004158127,0.0006403618,0.00019058671],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000110121386,0.0002080978,0.0004683942,0.00022137292,0.0001760813,0.00001119292,0.0001704747,0.000080689446,0.000469902],"category_scores_gemma":[0.0002316154,0.0001249492,0.00013977943,0.00057464186,0.00004030686,0.00016908484,0.000105811065,0.0002810022,0.000055448567],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006981199,0.00020696984,0.19373338,0.000799657,0.00037644096,0.000024540015,0.0054173856,0.00001540001,0.7706548,0.000048458907,0.0014301059,0.02722306],"study_design_scores_gemma":[0.0017448602,0.00083852396,0.9546539,0.0012317615,0.00031520074,0.000049245304,0.0019418531,0.000015253447,0.037947305,0.00009008519,0.0010483913,0.00012359065],"about_ca_topic_score_codex":0.00008256693,"about_ca_topic_score_gemma":0.000053595497,"teacher_disagreement_score":0.7609205,"about_ca_system_score_codex":0.00014204021,"about_ca_system_score_gemma":0.000068579444,"threshold_uncertainty_score":0.51450974},"labels":[],"label_agreement":null},{"id":"W2009622793","doi":"10.1164/rccm.201009-1451pp","title":"An Appraisal of the Evidence Underlying Performance Measures for Community-acquired Pneumonia","year":2011,"lang":"en","type":"review","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Psychological intervention; Relative risk; Guideline; Confidence interval; Vaccination; Intensive care medicine; Evidence-based medicine; Incidence (geometry); Pneumococcal pneumonia; Pneumonia; Community-acquired pneumonia; Internal medicine; Streptococcus pneumoniae; Antibiotics; Alternative medicine; Psychiatry; Immunology; Pathology","score_opus":0.19216821364838127,"score_gpt":0.44428923413039106,"score_spread":0.2521210204820098,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2009622793","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.021938361,0.9761373,0.0003752575,0.0002563578,0.0006519734,0.0004957666,0.000017948072,0.000016297687,0.00011074841],"genre_scores_gemma":[0.42741945,0.57114685,0.00007526699,0.00075530604,0.0005136425,0.000031713804,0.0000020798657,0.000051782037,0.0000038854155],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9963008,0.0013563226,0.0012917606,0.00022629392,0.00050469814,0.00032011096],"domain_scores_gemma":[0.994437,0.0024104721,0.0008949551,0.00066847407,0.0011428045,0.00044631015],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0016492091,0.00040054918,0.0024129557,0.0003198123,0.0004395878,0.000014395466,0.000492935,0.00018246612,0.000013952601],"category_scores_gemma":[0.003271617,0.00021801238,0.0005306442,0.0004891701,0.0032364076,0.00019408505,0.00006357703,0.0011501217,5.670283e-7],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012970513,0.00011705026,0.0016089528,0.015381749,0.0001720092,0.000014644521,0.001194916,3.1755835e-7,0.00072047196,0.00014992696,0.000027499684,0.98048276],"study_design_scores_gemma":[0.0009219714,0.033828057,0.004553171,0.07253454,0.0068947086,0.0016473882,0.0075224955,0.0000021988176,0.00004726661,0.000026217847,0.87162066,0.00040130818],"about_ca_topic_score_codex":0.000020862817,"about_ca_topic_score_gemma":0.000006647214,"teacher_disagreement_score":0.98008144,"about_ca_system_score_codex":0.00008979564,"about_ca_system_score_gemma":0.00087912416,"threshold_uncertainty_score":0.9994762},"labels":[],"label_agreement":null},{"id":"W2009860853","doi":"10.1086/502331","title":"Pneumococcal Immunization in Older Adults: Implications for the Long-Term–Care Setting","year":2004,"lang":"en","type":"review","venue":"Infection Control and Hospital Epidemiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University; Hamilton Regional Laboratory Medicine Program","funders":"","keywords":"Medicine; Observational study; Randomized controlled trial; Vaccine efficacy; Confidence interval; Pneumococcal vaccine; Pneumococcal polysaccharide vaccine; Clinical trial; Cohort study; Vaccination; Pediatrics; Internal medicine; Streptococcus pneumoniae; Immunology; Pneumococcal disease; Antibiotics","score_opus":0.02397384698084252,"score_gpt":0.36412019820758723,"score_spread":0.3401463512267447,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2009860853","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00086771295,0.98061407,0.008885266,0.0037999842,0.0007217601,0.0048705377,0.00009085347,0.00010247666,0.000047362322],"genre_scores_gemma":[0.028704591,0.9668953,0.000022800643,0.00062351616,0.0005264179,0.0028067108,0.00034969806,0.0000505671,0.000020397716],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9976039,0.00036548055,0.0010560208,0.00051893294,0.000043813718,0.00041187377],"domain_scores_gemma":[0.9961955,0.002556346,0.0005379762,0.00038224764,0.00021359675,0.000114352144],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00059913396,0.00038936138,0.0015656257,0.00028128037,0.00038774867,0.000018869741,0.00009215833,0.00066214846,0.000009921774],"category_scores_gemma":[0.0014925707,0.00025105348,0.00058319554,0.0002783016,0.00019168407,0.00008519854,0.00003991217,0.00068221305,0.000012126711],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016431035,0.00014131806,0.13480751,0.007741506,0.00023093821,0.0000021256055,0.00011022591,0.00003507245,0.0000019964555,0.00073374686,0.000024014278,0.8561551],"study_design_scores_gemma":[0.002680611,0.0005637577,0.81800956,0.008004688,0.0013264263,0.00025839562,0.000022810533,0.000047029345,8.147569e-8,0.0001571728,0.1686065,0.00032297624],"about_ca_topic_score_codex":0.00012442522,"about_ca_topic_score_gemma":0.00010169353,"teacher_disagreement_score":0.85583216,"about_ca_system_score_codex":0.00027689125,"about_ca_system_score_gemma":0.00029158554,"threshold_uncertainty_score":0.99999416},"labels":[],"label_agreement":null},{"id":"W2010100945","doi":"10.1016/j.rcc.2004.10.001","title":"Do Guidelines Guide Pneumonia Practice? A Systematic Review of Interventions and Barriers to Best Practice in the Management of Community-acquired Pneumonia","year":2005,"lang":"en","type":"review","venue":"Respiratory Care Clinics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":54,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Health Economics","funders":"","keywords":"Medicine; Guideline; Psychological intervention; Academic detailing; Quality management; Best practice; Audit; Outreach; Intervention (counseling); Nursing; Systematic review; Health care; MEDLINE; Service (business)","score_opus":0.13307581881583902,"score_gpt":0.5065858790425124,"score_spread":0.3735100602266734,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010100945","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00006659253,0.9884452,0.000013660821,0.001267795,0.00028995657,0.007390558,0.00015435657,0.00003606584,0.0023357666],"genre_scores_gemma":[0.00003725522,0.98761743,0.00064615865,0.010281624,0.000121347235,0.0010741168,0.000038912753,0.000095052375,0.00008810173],"study_design_codex":"systematic_review","study_design_gemma":"not_applicable","domain_scores_codex":[0.9865755,0.005486462,0.0061500254,0.0004996429,0.0009001667,0.0003881993],"domain_scores_gemma":[0.98777527,0.0035432263,0.0035801674,0.0026743303,0.002051804,0.00037521927],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.009197867,0.0006991566,0.0043321666,0.0006397089,0.00026716138,0.000054210825,0.0008807078,0.0004473107,0.00002176299],"category_scores_gemma":[0.021641837,0.00048539907,0.0014459136,0.0015142558,0.00024017466,0.0002420387,0.00044268873,0.0011985361,0.000039450755],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014147901,0.00046924248,0.000007741909,0.8985532,0.0010553494,0.00011964179,0.0010179845,0.0000025198788,0.0000030501535,0.00009568755,0.0006269353,0.09803449],"study_design_scores_gemma":[0.00024302014,0.0006316776,0.000004639839,0.45723498,0.012407756,0.00021718013,0.009356198,2.0614604e-7,1.8892132e-7,0.0000010457638,0.51970726,0.00019583151],"about_ca_topic_score_codex":0.000029638404,"about_ca_topic_score_gemma":0.000035826615,"teacher_disagreement_score":0.51908034,"about_ca_system_score_codex":0.00033918588,"about_ca_system_score_gemma":0.0010506932,"threshold_uncertainty_score":0.9997598},"labels":[],"label_agreement":null},{"id":"W2010285700","doi":"10.1007/s15010-001-1020-2","title":"Hospitalization Decision for Ambulatory Patients with Community-Acquired Pneumonia: A Prospective Study with General Practitioners in France","year":2001,"lang":"en","type":"article","venue":"Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hotel Dieu Hospital","funders":"","keywords":"Ambulatory; Pneumonia; Community-acquired pneumonia; Medicine; General practice; Prospective cohort study; Intensive care medicine; Emergency medicine; Family medicine; Internal medicine","score_opus":0.009739340027744828,"score_gpt":0.27910304924672347,"score_spread":0.2693637092189786,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010285700","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98896176,0.0000059183626,0.0075482614,0.000056583787,0.00018652334,0.002812827,0.0000051622587,0.0001225482,0.00030041835],"genre_scores_gemma":[0.99881434,0.000008289908,0.00014791507,0.00015983538,0.00007956394,0.0006159922,0.000058964422,0.00003640963,0.00007870077],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99892503,0.00011623686,0.00024694542,0.00024852905,0.00026289772,0.00020033297],"domain_scores_gemma":[0.9990264,0.00007034514,0.00015089092,0.00027054985,0.0004084219,0.00007335448],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020623741,0.0001825179,0.00024099713,0.0002903073,0.0003875533,0.000032465512,0.000034354034,0.000092926864,0.000008608838],"category_scores_gemma":[0.00007270147,0.00013873364,0.000042299842,0.00069017865,0.00006332774,0.00041399026,0.000013936559,0.00022381057,0.0000058500905],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00060254335,0.003077843,0.99229956,0.000026359181,0.00007232226,0.000009309474,0.00070655183,0.0013907936,0.00073467987,0.00001685921,0.000013659112,0.0010495299],"study_design_scores_gemma":[0.007010331,0.0076181656,0.98321223,0.0001491697,0.00009870357,0.000034568933,0.00019941758,0.00023469017,0.00009551865,0.000056905566,0.0011127769,0.00017753306],"about_ca_topic_score_codex":0.00039023318,"about_ca_topic_score_gemma":0.0011208925,"teacher_disagreement_score":0.009852571,"about_ca_system_score_codex":0.00028780388,"about_ca_system_score_gemma":0.00007896462,"threshold_uncertainty_score":0.56573933},"labels":[],"label_agreement":null},{"id":"W2010678523","doi":"10.1378/chest.126.4_meetingabstracts.847s","title":"Short-course Gemifloxacin Therapy is Effective Against Streptococcus pneumoniae in a Murine Model of Pneumonia","year":2004,"lang":"en","type":"article","venue":"CHEST Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Occupational Cancer Research Centre","funders":"","keywords":"Gemifloxacin; Streptococcus pneumoniae; Medicine; Pneumonia; Pneumococcal pneumonia; Community-acquired pneumonia; Microbiology; Antibiotics; Pneumococcal infections; Immunology; Internal medicine; Biology","score_opus":0.02590748155494221,"score_gpt":0.3031621063383312,"score_spread":0.27725462478338897,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010678523","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99542993,0.00033759297,0.00041562284,0.001768039,0.00017545749,0.00065559667,0.000015516325,0.000040997453,0.0011612199],"genre_scores_gemma":[0.9979983,0.0007654277,0.000120055534,0.00070931175,0.0002333809,0.000057332418,0.0000030694566,0.000044573848,0.000068553694],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998225,0.000060154885,0.0006154269,0.00028914935,0.0003762888,0.0004339883],"domain_scores_gemma":[0.9988938,0.00004549072,0.00018827796,0.00034150036,0.00021112798,0.00031981198],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037315948,0.00029454776,0.0005638306,0.00035042054,0.00013851878,0.000028092665,0.00015576815,0.00019386207,0.000027824182],"category_scores_gemma":[0.00005322602,0.00023230963,0.00030694366,0.00040230603,0.00015488014,0.00017601163,0.000033357992,0.0009813337,0.000017927567],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009498022,0.0013190813,0.16906334,0.00008900971,0.00018653081,0.00031363074,0.0015504075,0.010729673,0.79633415,0.000028661701,0.000048161975,0.020242361],"study_design_scores_gemma":[0.008378168,0.0013826576,0.8531908,0.00086917036,0.00014879255,0.0006520478,0.0003929871,0.0021183293,0.13011925,0.0010871339,0.0011677464,0.00049295137],"about_ca_topic_score_codex":0.000009406553,"about_ca_topic_score_gemma":0.000018835992,"teacher_disagreement_score":0.6841274,"about_ca_system_score_codex":0.00029592245,"about_ca_system_score_gemma":0.00047399692,"threshold_uncertainty_score":0.9473312},"labels":[],"label_agreement":null},{"id":"W2010987224","doi":"10.1016/j.vaccine.2011.11.004","title":"Pneumococcal sequence type replacement among American Indian children: A comparison of pre- and routine-PCV7 eras","year":2011,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; Centers for Disease Control and Prevention; Bill and Melinda Gates Foundation","keywords":"Multilocus sequence typing; Pneumococcal conjugate vaccine; Serotype; Carriage; Typing; Biology; Conjugate vaccine; Medicine; Virology; Streptococcus pneumoniae; Microbiology; Genetics; Genotype; Pathology","score_opus":0.027866130467527367,"score_gpt":0.3079104294100595,"score_spread":0.28004429894253213,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010987224","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984451,0.000072515766,0.000016899108,0.00017243158,0.000081457976,0.00037518854,0.000006381765,0.00005700753,0.0007730478],"genre_scores_gemma":[0.9994409,0.000033271986,0.00011775376,0.0001527901,0.00006576146,0.000012916151,0.0000124934895,0.000016063108,0.00014804557],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99909586,0.00003827788,0.0003197519,0.00023196824,0.000121809244,0.00019230714],"domain_scores_gemma":[0.9992504,0.000019215464,0.00018081811,0.0003035542,0.00007770355,0.00016831029],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010539689,0.00013832924,0.0003660091,0.00013360489,0.000067501875,0.0000055134683,0.00006147355,0.000054074873,0.00011146702],"category_scores_gemma":[0.000056805453,0.00010984746,0.000044412172,0.00032153932,0.000062462685,0.000052736013,0.00004662017,0.00019637987,0.000011777458],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018722388,0.00022898214,0.9649543,0.000026404918,0.00007716164,0.000007139296,0.0011396804,0.0000018442685,0.031980447,0.00002739521,0.00010281561,0.0012665814],"study_design_scores_gemma":[0.00088295765,0.001916278,0.9864881,0.00006389008,0.000091816066,0.000079437195,0.00016138815,0.00006044302,0.009815511,0.0000064583305,0.00032503725,0.000108684406],"about_ca_topic_score_codex":0.00064401666,"about_ca_topic_score_gemma":0.0001276164,"teacher_disagreement_score":0.022164937,"about_ca_system_score_codex":0.000030261464,"about_ca_system_score_gemma":0.00005469539,"threshold_uncertainty_score":0.44794494},"labels":[],"label_agreement":null},{"id":"W2011071672","doi":"10.1016/j.vaccine.2009.06.008","title":"Essential criteria for evaluation of pneumococcal conjugate vaccine candidates","year":2009,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Women's Health Research Institute","funders":"","keywords":"Pneumococcal conjugate vaccine; Serotype; Pneumococcal disease; Antibody; Conjugate; Medicine; Virology; Streptococcus pneumoniae; Conjugate vaccine; Immunology; Microbiology; Biology; Immunization; Antibiotics; Mathematics","score_opus":0.024100842962030352,"score_gpt":0.354582361432201,"score_spread":0.33048151847017065,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011071672","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9932006,0.00015656384,0.00032022342,0.0044032754,0.00031563742,0.00088235637,0.000027837277,0.000058323938,0.0006352047],"genre_scores_gemma":[0.99870884,0.000024143324,0.00008165698,0.00044039916,0.00042423882,0.00004658593,0.00008448689,0.000013830712,0.0001757943],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989498,0.000051134833,0.00036391965,0.00020615225,0.00022805714,0.00020092791],"domain_scores_gemma":[0.9989698,0.000044965418,0.00011420847,0.0002496272,0.00051686243,0.00010452138],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004543612,0.00013679874,0.0003335707,0.00016053126,0.000078902776,0.000010794054,0.000055471442,0.00008530261,0.00044516166],"category_scores_gemma":[0.00020967724,0.00010918346,0.00011755367,0.00019249073,0.0000051730194,0.00007940286,0.000010681974,0.00008337395,0.00001578883],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003690651,0.00028532845,0.00945087,0.000060186117,0.00007056698,0.0000029720652,0.00006446173,0.000028738204,0.9823487,0.00016837192,0.0026666976,0.004484068],"study_design_scores_gemma":[0.019801077,0.003038127,0.65919155,0.00017828058,0.0015031578,0.0001422088,0.00005042312,0.0115655875,0.28418973,0.0015787658,0.018452056,0.00030901184],"about_ca_topic_score_codex":0.000012144316,"about_ca_topic_score_gemma":0.000020592073,"teacher_disagreement_score":0.6981589,"about_ca_system_score_codex":0.000046189303,"about_ca_system_score_gemma":0.0001324958,"threshold_uncertainty_score":0.4874208},"labels":[],"label_agreement":null},{"id":"W2011257632","doi":"10.1002/ebch.1928","title":"Commentaries on ‘Procalcitonin to initiate or discontinue antibiotics in acute respiratory tract infections’ with a response from the review authors","year":2013,"lang":"en","type":"letter","venue":"Evidence-Based Child Health A Cochrane Review Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; BC Children's Hospital; University of British Columbia","funders":"","keywords":"Procalcitonin; Medicine; Antibiotics; Respiratory tract infections; Intensive care medicine; Systematic review; Respiratory tract; Internal medicine; Respiratory system; MEDLINE; Microbiology; Sepsis; Political science; Law","score_opus":0.07327567100725753,"score_gpt":0.3931623015071157,"score_spread":0.31988663049985816,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011257632","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0013681487,0.33718058,0.000110455716,0.6560542,0.0005079197,0.004570942,0.0001302844,0.000058504815,0.00001894276],"genre_scores_gemma":[0.00023978448,0.41059473,0.000079745936,0.5871031,0.0016384304,0.00013247317,0.000057472582,0.000087134445,0.00006706158],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.987523,0.0060235993,0.0027975454,0.0008899695,0.0015778876,0.0011879919],"domain_scores_gemma":[0.9897932,0.0052872435,0.001999726,0.0015306267,0.0005246955,0.0008645333],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.006285779,0.0010421366,0.003196459,0.00066838664,0.0011863153,0.00017934237,0.0006593181,0.00052362215,0.0006867113],"category_scores_gemma":[0.0056030103,0.00054672325,0.0007171059,0.0017240543,0.00030835217,0.00037317607,0.00007236058,0.010298113,0.00025183606],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010777739,0.00048150792,0.003824805,0.017737158,0.00028461686,0.00225812,0.00013891005,0.000008706971,0.000009641427,0.0000013826151,0.96928614,0.004891213],"study_design_scores_gemma":[0.0010107725,0.004544369,0.009191027,0.44703197,0.0007812567,0.0014237381,0.000008592719,0.0000012505857,0.0000058370897,0.000003958378,0.535639,0.00035827514],"about_ca_topic_score_codex":0.00030145352,"about_ca_topic_score_gemma":0.00028504326,"teacher_disagreement_score":0.43364722,"about_ca_system_score_codex":0.0012823179,"about_ca_system_score_gemma":0.006679083,"threshold_uncertainty_score":0.9996984},"labels":[],"label_agreement":null},{"id":"W2011477232","doi":"10.1016/j.jcrc.2015.03.003","title":"The role of noninvasive positive pressure ventilation in community-acquired pneumonia: Author's response","year":2015,"lang":"en","type":"letter","venue":"Journal of Critical Care","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Jewish General Hospital; McGill University; McGill University Health Centre","funders":"","keywords":"Medicine; Positive pressure ventilation; Pneumonia; Intensive care medicine; Community-acquired pneumonia; Ventilation (architecture); Internal medicine; Respiratory system; Mechanical engineering","score_opus":0.027508592347143167,"score_gpt":0.3420517297754378,"score_spread":0.31454313742829465,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011477232","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.19363126,0.009761513,0.000024532425,0.7918402,0.0014056391,0.0006105601,0.0002975923,0.00002138648,0.0024073033],"genre_scores_gemma":[0.9790088,0.00000948767,0.000019709238,0.019673605,0.0010117148,0.000007801206,0.000020813683,0.000034125696,0.00021392733],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9962937,0.0018410045,0.0007469289,0.00010700923,0.000738111,0.00027323925],"domain_scores_gemma":[0.9946991,0.0019493987,0.00034933156,0.00035908978,0.0024998924,0.00014316723],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0011327434,0.00020624761,0.00062564545,0.00030779047,0.0002125775,0.00003899285,0.00024066475,0.0006509264,0.000012131194],"category_scores_gemma":[0.0032022244,0.000141401,0.0003250262,0.00020017973,0.0004164698,0.000116573116,0.00006701442,0.0033375775,0.0000038320636],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.03475006,0.003990713,0.045159426,0.015290673,0.0031620923,0.03919978,0.10273993,0.0002894888,0.27633283,0.0008360668,0.46490318,0.013345769],"study_design_scores_gemma":[0.0019666194,0.005659132,0.07153522,0.0024693406,0.002263805,0.0032508993,0.016035892,0.000019491697,0.0058829016,0.0016652653,0.88887954,0.00037189593],"about_ca_topic_score_codex":0.000021078928,"about_ca_topic_score_gemma":0.000016725777,"teacher_disagreement_score":0.78537756,"about_ca_system_score_codex":0.00023082473,"about_ca_system_score_gemma":0.000837137,"threshold_uncertainty_score":0.99896175},"labels":[],"label_agreement":null},{"id":"W2011867843","doi":"10.1055/s-0032-1315642","title":"Community-Acquired Pneumonia Guidelines: A Global Perspective","year":2012,"lang":"en","type":"article","venue":"Seminars in Respiratory and Critical Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Intensive care medicine; Community-acquired pneumonia; Pneumonia","score_opus":0.07675251081095666,"score_gpt":0.4193735396214849,"score_spread":0.34262102881052825,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011867843","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9248896,0.036830287,0.000079109726,0.011260828,0.00074040744,0.0004154197,0.000028783648,0.0001383636,0.02561718],"genre_scores_gemma":[0.98631144,0.00013766991,0.0000932363,0.012503682,0.00080968154,0.000054593478,0.000008044355,0.000024535033,0.0000570936],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99770045,0.00042928857,0.00056592224,0.0002912149,0.0003996921,0.0006134535],"domain_scores_gemma":[0.9979017,0.00032228057,0.000047417507,0.00046673082,0.0006069591,0.0006549198],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00092805206,0.00030494467,0.00058255834,0.0001913175,0.0003525298,0.000013034162,0.000121335506,0.00025706392,0.00012944987],"category_scores_gemma":[0.003962837,0.0002409488,0.00008939333,0.0005549945,0.001156359,0.00018315892,0.00011194249,0.00061012356,0.00001974074],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031750332,0.0009476809,0.8780281,0.0012006029,0.00008427204,0.0005115979,0.016994353,0.0000018112839,0.043281537,0.0340215,0.0037675097,0.020843552],"study_design_scores_gemma":[0.0052844477,0.0058908197,0.5473084,0.003636147,0.0006578862,0.0012696346,0.2633008,0.000023211122,0.0007244066,0.0023289383,0.16870162,0.00087372196],"about_ca_topic_score_codex":0.00014942017,"about_ca_topic_score_gemma":0.0000666216,"teacher_disagreement_score":0.3307197,"about_ca_system_score_codex":0.00046097185,"about_ca_system_score_gemma":0.00013635753,"threshold_uncertainty_score":0.98256063},"labels":[],"label_agreement":null},{"id":"W2012185674","doi":"10.1053/srin.2000.18066","title":"Antimicrobial susceptibility patterns of respiratory pathogens-A global perspective","year":2000,"lang":"en","type":"review","venue":"Seminars in Respiratory Infections","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of Saskatchewan","funders":"","keywords":"Moraxella catarrhalis; Haemophilus influenzae; Streptococcus pneumoniae; Antibiotic resistance; Antimicrobial; Ampicillin; Amp resistance; Microbiology; Medicine; Respiratory tract infections; Penicillin; Amoxicillin; Drug resistance; Antibiotics; Biology; Respiratory system; Internal medicine","score_opus":0.044105165974047886,"score_gpt":0.3694193894268715,"score_spread":0.3253142234528236,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012185674","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.01566697,0.96721035,0.000028119177,0.000036372294,0.0011455645,0.003049618,0.0017964438,0.00030620312,0.0107603595],"genre_scores_gemma":[0.0022710632,0.99564886,0.000018079701,0.00059138465,0.0006450012,0.0004140442,0.000079433165,0.00016305565,0.00016905967],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99372315,0.0010503044,0.0023088146,0.001451483,0.000560116,0.00090613164],"domain_scores_gemma":[0.99618363,0.000311316,0.00084111025,0.0017680365,0.0004630757,0.00043280015],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0008707283,0.0011229526,0.0034778623,0.0014424445,0.00032120163,0.000044753702,0.00039466267,0.0015249248,0.0006229196],"category_scores_gemma":[0.0004945659,0.0010528605,0.0019959884,0.0026511922,0.0005797984,0.00020645693,0.00018378533,0.0018854112,0.00021715924],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008930542,0.005843209,0.14093213,0.023461202,0.0011464318,0.0010456836,0.00041596353,0.00004849332,0.00041977508,0.0008236317,0.0022865748,0.8234876],"study_design_scores_gemma":[0.0009645014,0.0010068548,0.0036082396,0.016681293,0.0015635476,0.00038248757,0.00017806745,7.479934e-7,0.000028220964,0.000047928388,0.97469336,0.00084475026],"about_ca_topic_score_codex":0.00017665562,"about_ca_topic_score_gemma":0.0007008825,"teacher_disagreement_score":0.9724068,"about_ca_system_score_codex":0.0030088532,"about_ca_system_score_gemma":0.0025576882,"threshold_uncertainty_score":0.9997713},"labels":[],"label_agreement":null},{"id":"W2012405329","doi":"10.1128/jcm.39.2.733-737.2001","title":"Surveillance of Invasive <i>Streptococcus pneumoniae</i> Infection in the Province of Quebec, Canada, from 1996 to 1998: Serotype Distribution, Antimicrobial Susceptibility, and Clinical Characteristics","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Royal Victoria Hospital; McGill University Health Centre; Hôpital Saint-Luc; Centre Integre de Sante et de Services Sociaux de Laval; Royal Victoria Regional Health Centre; Université de Sherbrooke; Institut National de Santé Publique du Québec","funders":"University of Alberta","keywords":"Streptococcus pneumoniae; Serotype; Penicillin; Microbiology; Antimicrobial; Antibiotics; Pneumococcal infections; Antibiotic resistance; Conjugate vaccine; Biology; Cephalosporin; Virology; Medicine","score_opus":0.023289407287700715,"score_gpt":0.32736678200510333,"score_spread":0.3040773747174026,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012405329","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951273,0.0000351363,0.00006164169,0.003267737,0.0008131857,0.00038076576,0.00029880286,0.0000035402857,0.000011874672],"genre_scores_gemma":[0.99763465,0.0005949681,0.000018786654,0.0012584617,0.0004081037,0.0000016529021,0.00005829482,0.000007652237,0.000017452643],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9961828,0.0007931211,0.0024934958,0.00023924049,0.000090023124,0.00020132388],"domain_scores_gemma":[0.99592465,0.0019709524,0.0012834665,0.00027293523,0.00040422718,0.00014374996],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017145762,0.00015054099,0.0010669596,0.00006311073,0.000040294937,0.0000070545643,0.00016279361,0.0002841436,0.000011904945],"category_scores_gemma":[0.0028462813,0.00010054546,0.00023492335,0.00022235747,0.00041545244,0.000046969755,0.000069370595,0.0007376383,0.000002112682],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043777973,0.0005711341,0.92636365,0.000038355567,0.00009725674,0.00006796697,0.000022974327,0.000003815207,0.06900905,0.000002951263,0.0021464915,0.001238583],"study_design_scores_gemma":[0.0013838083,0.0012290375,0.97989535,0.00016444351,0.000082348,0.00020648593,0.000019454454,0.0000019098375,0.00079798046,0.000011056753,0.016121622,0.000086515276],"about_ca_topic_score_codex":0.047770415,"about_ca_topic_score_gemma":0.801466,"teacher_disagreement_score":0.7536956,"about_ca_system_score_codex":0.00008001806,"about_ca_system_score_gemma":0.0016342031,"threshold_uncertainty_score":0.95857054},"labels":[],"label_agreement":null},{"id":"W2012427838","doi":"10.1128/iai.70.8.4226-4238.2002","title":"Pathogenesis of Pneumococcal Pneumonia in Cyclophosphamide-Induced Leukopenia in Mice","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Leukopenia; Pneumonia; Biology; Immunology; Streptococcus pneumoniae; Lung; Pathogenesis; Cyclophosphamide; Pathology; Microbiology; Medicine; Antibiotics; Internal medicine; Chemotherapy","score_opus":0.02983535884702861,"score_gpt":0.27166833898412535,"score_spread":0.24183298013709673,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012427838","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99575603,0.00015563707,0.000005162462,0.0002404455,0.00016938768,0.000260164,0.000001940517,0.00003545951,0.003375748],"genre_scores_gemma":[0.9989847,0.00069509353,0.000006575839,0.00014047897,0.00002188505,0.000026339041,0.0000023947805,0.000012334395,0.00011018254],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990351,0.00014824606,0.00037414188,0.0001628372,0.00009690474,0.00018276174],"domain_scores_gemma":[0.99952936,0.00006520991,0.000080113976,0.00019082575,0.000055819102,0.00007869902],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023543893,0.00013267122,0.0003018589,0.00035700924,0.000077421,0.000009469562,0.00003734836,0.00014722315,0.00011822464],"category_scores_gemma":[0.0001289731,0.0001250909,0.00006677359,0.00059377844,0.00006296664,0.00012284599,0.000037264937,0.0003756166,0.00002549373],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014873688,0.00030850564,0.45387268,0.000035767425,0.0000077164295,0.000011971781,0.00022594181,0.00000775902,0.5404126,0.000012730754,0.0000029200933,0.0050865035],"study_design_scores_gemma":[0.0011992641,0.0002723865,0.98388,0.00009714073,0.00001844178,0.00009770828,0.00006347628,0.00024149877,0.0126068285,0.000022890983,0.0013865035,0.00011385829],"about_ca_topic_score_codex":0.0019376939,"about_ca_topic_score_gemma":0.0008404804,"teacher_disagreement_score":0.5300073,"about_ca_system_score_codex":0.00008631511,"about_ca_system_score_gemma":0.000031424384,"threshold_uncertainty_score":0.51010585},"labels":[],"label_agreement":null},{"id":"W2012611494","doi":"10.1016/j.jclinepi.2009.11.006","title":"Community controls were preferred to hospital controls in a case–control study where the cases are derived from the hospital","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Epidemiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Logistic regression; Case-control study; Medicine; Community-acquired pneumonia; Community hospital; Demography; Selection bias; Pneumonia; Gerontology; Statistics; Internal medicine; Psychiatry; Pathology","score_opus":0.14540843305753529,"score_gpt":0.45521733338777065,"score_spread":0.30980890033023534,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012611494","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8804285,0.00032723142,0.00017352465,0.11511822,0.0022385626,0.0015654782,0.00008273092,0.000015322246,0.000050434584],"genre_scores_gemma":[0.9822936,0.00005729805,0.000070707916,0.015536727,0.0019197449,0.00006814663,0.0000012342475,0.000023186456,0.000029324761],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.98235,0.012857557,0.0038018643,0.0002760666,0.00023012942,0.00048441885],"domain_scores_gemma":[0.9068763,0.088800356,0.0023825825,0.0009495359,0.00047727366,0.0005139377],"candidate_categories":["metaresearch","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.01854068,0.00029959562,0.0030178456,0.00008275183,0.0003919822,0.000027078084,0.00057410815,0.00046885465,0.00016642966],"category_scores_gemma":[0.12718712,0.00014032672,0.00088892685,0.00015342183,0.0005548105,0.000107804,0.00012147172,0.006040076,0.000035516383],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010069555,0.0025170625,0.98720336,0.000005088986,0.0008065672,0.0024231859,0.00072674226,0.000049421447,0.00046902316,0.000025460311,0.0022657674,0.0025013695],"study_design_scores_gemma":[0.010724785,0.009132488,0.9660049,0.000101332545,0.00057816796,0.0020504904,0.0049056252,0.00010009755,0.0000019134427,0.00032589425,0.005926855,0.0001474434],"about_ca_topic_score_codex":0.0011402708,"about_ca_topic_score_gemma":0.0101144845,"teacher_disagreement_score":0.10864643,"about_ca_system_score_codex":0.0000439361,"about_ca_system_score_gemma":0.00029361708,"threshold_uncertainty_score":0.996253},"labels":[],"label_agreement":null},{"id":"W2012617927","doi":"10.3810/pgm.2010.03.2130","title":"Burden of Community-Acquired Pneumonia in North American Adults","year":2010,"lang":"en","type":"review","venue":"Postgraduate Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":477,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dalhousie University","funders":"U.S. National Library of Medicine; National Institutes of Health","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Streptococcus pneumoniae; Mortality rate; Population; Pneumococcal pneumonia; Etiology; Incidence (geometry); Intensive care medicine; Pneumonia severity index; Intensive care unit; Pediatrics; Internal medicine; Antibiotics; Environmental health","score_opus":0.056630710568058795,"score_gpt":0.359472634092064,"score_spread":0.3028419235240052,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012617927","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.086019464,0.9073207,0.0000021053695,0.0024217837,0.00069838384,0.0019067182,0.00010362055,0.00013455687,0.0013927126],"genre_scores_gemma":[0.020131547,0.9779174,0.00002069399,0.0003443506,0.00059910316,0.00012969668,0.0005397396,0.000118233846,0.00019924973],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9963541,0.00061194785,0.0016071929,0.00036516786,0.0005303087,0.00053126895],"domain_scores_gemma":[0.996504,0.0005151279,0.0009879826,0.0013495147,0.0002601392,0.00038321395],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00058876834,0.00069979735,0.0044231983,0.0011875273,0.00013272834,0.0000060323455,0.00045639658,0.000289102,0.000043358457],"category_scores_gemma":[0.000726786,0.0004768124,0.00046026573,0.0022971188,0.0012348663,0.000047469854,0.00013722673,0.002327472,0.00006900113],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004346844,0.00030238446,0.0016605853,0.013816907,0.00018498476,0.00013531883,0.0014959318,3.3581995e-7,0.000237313,0.000007851768,0.00013115566,0.9819838],"study_design_scores_gemma":[0.0015425577,0.0019290351,0.012481709,0.021677267,0.0015801975,0.0005855044,0.00038409643,0.00000626516,0.0000036996896,0.0000050309827,0.95939815,0.00040649483],"about_ca_topic_score_codex":0.004501653,"about_ca_topic_score_gemma":0.0033981295,"teacher_disagreement_score":0.9815773,"about_ca_system_score_codex":0.00014409066,"about_ca_system_score_gemma":0.00041741694,"threshold_uncertainty_score":0.9999742},"labels":[],"label_agreement":null},{"id":"W2012952526","doi":"10.1371/journal.pmed.1001048","title":"Cardiac Complications in Patients with Community-Acquired Pneumonia: A Systematic Review and Meta-Analysis of Observational Studies","year":2011,"lang":"en","type":"review","venue":"PLoS Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":249,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; University of Ottawa","funders":"Ottawa Hospital Research Institute","keywords":"Medicine; Pneumonia; Incidence (geometry); Observational study; Heart failure; Internal medicine; Myocardial infarction; Community-acquired pneumonia; Intensive care medicine","score_opus":0.4321860260583943,"score_gpt":0.4159343850808364,"score_spread":0.01625164097755788,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012952526","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000092959,0.9946323,0.0000018269744,0.00044825007,0.000021911073,0.004372686,0.00022289688,0.000026326323,0.00018085088],"genre_scores_gemma":[0.00023884962,0.99647045,0.000023523773,0.0008013829,0.000012159877,0.0016243366,0.00069434696,0.000034732333,0.0001002305],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99630123,0.0010881609,0.0017132378,0.00029497553,0.00042720052,0.00017516327],"domain_scores_gemma":[0.99591696,0.0010465735,0.0011101889,0.001071633,0.0007266382,0.00012800876],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00084461464,0.00045892477,0.014209711,0.0008304778,0.000121833866,0.0000029056569,0.00018156161,0.00012965809,0.00005082637],"category_scores_gemma":[0.0007884524,0.00023349193,0.00086003373,0.0020146696,0.0003925695,0.000052845564,0.0000803338,0.00041844865,0.0000050099306],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000019862578,0.00035486743,0.001197782,0.7281961,0.26979786,0.0000015837579,0.00028226536,8.453796e-8,4.018486e-7,0.00006670529,0.000031241143,0.0000691313],"study_design_scores_gemma":[0.00023605714,0.0002876148,0.0055000354,0.14358163,0.8461131,0.000005487044,0.00006783531,4.691911e-7,2.3910536e-8,0.000004273273,0.004050374,0.00015314991],"about_ca_topic_score_codex":0.000034613287,"about_ca_topic_score_gemma":0.000028693468,"teacher_disagreement_score":0.58461446,"about_ca_system_score_codex":0.000104702325,"about_ca_system_score_gemma":0.000118236385,"threshold_uncertainty_score":0.97134745},"labels":[],"label_agreement":null},{"id":"W2013803462","doi":"10.1016/j.clinthera.2009.10.014","title":"Modeling the impact of a new vaccine on pneumococcal and nontypable Haemophilus influenzae diseases: A new simulation model","year":2009,"lang":"en","type":"article","venue":"Clinical Therapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":47,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"GlaxoSmithKline","keywords":"Medicine; Streptococcus pneumoniae; Haemophilus influenzae; Vaccination; Pneumococcal infections; Pneumococcal conjugate vaccine; Immunology; Pneumonia; Conjugate vaccine; Pneumococcal disease; Virology; Immunization; Microbiology; Internal medicine; Biology; Antibiotics","score_opus":0.1433132348477407,"score_gpt":0.4521680009138585,"score_spread":0.30885476606611784,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013803462","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9831132,0.00036980378,0.012943138,0.0028375639,0.000063010266,0.0004139161,0.000006967257,0.000055483524,0.00019688474],"genre_scores_gemma":[0.9948619,0.00023648242,0.00010665727,0.0042261602,0.0003781224,0.0000016067829,0.0000035562166,0.000017872399,0.00016761813],"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9987593,0.00006201773,0.0005728424,0.00023139818,0.0001696545,0.00020474874],"domain_scores_gemma":[0.9987591,0.00030185044,0.00011039938,0.00041527813,0.00009339999,0.00032000092],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019119476,0.0001797203,0.00041664147,0.00006337813,0.00009965794,0.000020425,0.00009044976,0.00017427413,0.0000122196125],"category_scores_gemma":[0.00016464709,0.00010379908,0.00031760742,0.0001770838,0.000043149128,0.00006828739,0.000021025726,0.0003798532,0.000005805813],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00071636384,0.000469755,0.015481267,0.00000715317,0.00017246969,0.0000028246147,0.00015751863,0.94984806,0.0018246934,0.00011214029,0.000066558365,0.031141225],"study_design_scores_gemma":[0.0023242952,0.0018830434,0.06815036,0.00006467739,0.00029407258,0.000006829314,0.000010744541,0.9210262,0.000013407236,0.005857313,0.00026327386,0.00010581391],"about_ca_topic_score_codex":0.000026390804,"about_ca_topic_score_gemma":0.000002393634,"teacher_disagreement_score":0.05266909,"about_ca_system_score_codex":0.00003968509,"about_ca_system_score_gemma":0.00042443463,"threshold_uncertainty_score":0.42328036},"labels":[],"label_agreement":null},{"id":"W2013819723","doi":"10.1097/md.0b013e3180421c16","title":"Community-Acquired Pneumonia Requiring Admission to an Intensive Care Unit","year":2007,"lang":"en","type":"article","venue":"Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":113,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Intensive care unit; COPD; Pneumonia severity index; Odds ratio; Mechanical ventilation; Intensive care medicine; Intubation; Severity of illness; Intensive care; Respiratory failure; Internal medicine; Emergency medicine; Surgery","score_opus":0.08069747609859759,"score_gpt":0.39050996697668866,"score_spread":0.30981249087809104,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013819723","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9781991,0.00016906153,0.00073336135,0.010753029,0.00060534215,0.00041375821,0.0000030736571,0.0002312081,0.0088920295],"genre_scores_gemma":[0.9819362,0.000012079457,0.00008412135,0.016382802,0.000622649,0.000009998924,0.00005975863,0.00003835853,0.0008540342],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985476,0.0001274959,0.00038339655,0.0002224176,0.00032925064,0.00038979776],"domain_scores_gemma":[0.9973677,0.000109463756,0.00007120368,0.00068741763,0.00091661135,0.000847641],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00064787205,0.00020954052,0.00040320595,0.0004277198,0.000435183,0.000007730192,0.00015636688,0.00013065292,0.00019583291],"category_scores_gemma":[0.0010994445,0.00015395223,0.000055192308,0.00058316835,0.00017393507,0.00008720111,0.00008616655,0.00046686805,0.00008257118],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020560854,0.00009830818,0.05008727,0.00013132648,0.0000380518,0.00029312872,0.020414867,0.000006880566,0.90684396,0.000056206605,0.0011132101,0.020711185],"study_design_scores_gemma":[0.0030249094,0.0063557364,0.55288523,0.0014880643,0.00022339373,0.0005579995,0.10745923,0.000026421225,0.016926775,0.00004539895,0.3106667,0.0003401183],"about_ca_topic_score_codex":0.0002950312,"about_ca_topic_score_gemma":0.00028785635,"teacher_disagreement_score":0.8899172,"about_ca_system_score_codex":0.00013189514,"about_ca_system_score_gemma":0.00008419665,"threshold_uncertainty_score":0.627799},"labels":[],"label_agreement":null},{"id":"W2013985995","doi":"10.1016/s0732-8893(02)00448-0","title":"Gatifloxacin used for therapy of outpatient community-acquired pneumonia caused by Streptococcus pneumoniae","year":2002,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Gatifloxacin; Streptococcus pneumoniae; Medicine; Pneumonia; Internal medicine; Community-acquired pneumonia; Erythromycin; Sputum; Adverse effect; Diarrhea; Penicillin; Antibiotics; Microbiology; Levofloxacin; Tuberculosis; Pathology; Biology","score_opus":0.019520887279675075,"score_gpt":0.25958886447776697,"score_spread":0.2400679771980919,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013985995","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950996,0.0014072192,0.000093970775,0.00060954783,0.00025590486,0.0015902632,0.00071825,0.00010653112,0.000118728865],"genre_scores_gemma":[0.99696475,0.00085513334,0.0000025695224,0.0012755804,0.000049289916,0.00041725664,0.00029608238,0.000032616965,0.00010672599],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99857646,0.00029786956,0.00043150733,0.00029508042,0.000054064072,0.00034503895],"domain_scores_gemma":[0.9975963,0.0013530127,0.00018515729,0.0004133727,0.00015266163,0.00029944567],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016176986,0.00028219513,0.0004913112,0.00015185101,0.0004034422,0.000014794082,0.000085275766,0.00020403606,0.00016654159],"category_scores_gemma":[0.00077489944,0.00024005583,0.00018569728,0.00015998243,0.00042178083,0.00006239857,0.000040081843,0.00024491074,0.000017277109],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046610414,0.002296355,0.41885814,0.00015491419,0.00020436638,0.000010410402,0.0006271346,0.000008920371,0.5735807,0.000052001717,0.0028380787,0.0013224008],"study_design_scores_gemma":[0.02754904,0.016711067,0.74231344,0.0006912131,0.0012255798,0.00012559816,0.0005434956,0.0004638361,0.07797526,0.0006492392,0.12997301,0.0017791982],"about_ca_topic_score_codex":0.000030363273,"about_ca_topic_score_gemma":0.000029353114,"teacher_disagreement_score":0.4956054,"about_ca_system_score_codex":0.000049205224,"about_ca_system_score_gemma":0.000052246596,"threshold_uncertainty_score":0.97891927},"labels":[],"label_agreement":null},{"id":"W2014604211","doi":"10.1159/000260779","title":"Loss of Sensitivity to Xylitol by Streptococcus mutans LG-1","year":2009,"lang":"en","type":"article","venue":"Caries Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Xylitol; Sorbitol; Streptococcus mutans; Sucrose; Chemistry; Mannitol; Fructose; Lactose; Sugar alcohol; Food science; Biochemistry; Microbiology; Sugar; Bacteria; Fermentation; Biology","score_opus":0.04926428165230926,"score_gpt":0.41091841678880014,"score_spread":0.36165413513649086,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2014604211","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98054534,0.00006711537,0.00016034234,0.008062334,0.000068590205,0.00056792074,0.00007000887,0.00004353239,0.0104148295],"genre_scores_gemma":[0.9977694,0.000015292355,0.000015635667,0.0004615338,0.00011874948,0.00001826453,0.000010379065,0.000008934957,0.001581822],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985526,0.00017188721,0.00017358175,0.00022006985,0.00049581093,0.0003860391],"domain_scores_gemma":[0.9984897,0.00019071982,0.000019530517,0.00038439516,0.0006369224,0.00027874066],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00053007464,0.00008852068,0.00023470652,0.00020069623,0.00017025483,0.000022750166,0.00006469339,0.00009840934,0.0000880513],"category_scores_gemma":[0.0007614997,0.000073948606,0.000064122316,0.00070953136,0.00028673193,0.000047795333,0.00004654386,0.00038457746,0.00007724565],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009537593,0.0003041996,0.04253344,0.000058905553,0.000043840115,0.00025295906,0.00070984324,0.000012626376,0.9142142,0.0007674778,0.030944366,0.010062758],"study_design_scores_gemma":[0.0012577224,0.002968682,0.2486315,0.00016870143,0.00004256095,0.00011233246,0.0012304464,0.00010491141,0.37297824,0.00034690564,0.3718876,0.0002703786],"about_ca_topic_score_codex":0.00009159448,"about_ca_topic_score_gemma":0.000043209566,"teacher_disagreement_score":0.541236,"about_ca_system_score_codex":0.0000985864,"about_ca_system_score_gemma":0.00026762145,"threshold_uncertainty_score":0.30155367},"labels":[],"label_agreement":null},{"id":"W2014649428","doi":"10.1586/14787210.4.6.973","title":"Clinical implications of macrolide resistance in community-acquired respiratory tract infections","year":2006,"lang":"en","type":"review","venue":"Expert Review of Anti-infective Therapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre","funders":"","keywords":"Azithromycin; Clarithromycin; Streptococcus pneumoniae; Macrolide Antibiotics; Medicine; Respiratory tract infections; Pharmacodynamics; Antibiotics; Erythromycin; Pharmacology; Microbiology; Respiratory system; Biology; Internal medicine; Pharmacokinetics","score_opus":0.09898877564175433,"score_gpt":0.4691596342517495,"score_spread":0.37017085860999516,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2014649428","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0010452775,0.9903651,0.00006443434,0.0002567842,0.000320361,0.0034093424,0.00013878156,0.0000875765,0.004312381],"genre_scores_gemma":[0.0007974865,0.9964211,0.00008186482,0.0014084149,0.0003013296,0.00069681864,0.00012856792,0.00011471335,0.00004972319],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9917115,0.0034643149,0.003518962,0.0005634018,0.00032844493,0.000413369],"domain_scores_gemma":[0.99383974,0.0015144738,0.0020316213,0.0018706849,0.00057391747,0.00016956792],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0024313193,0.0007260447,0.0056564575,0.0007342695,0.00023034247,0.00001134951,0.00042304484,0.00060725794,0.00009635021],"category_scores_gemma":[0.0005887982,0.00056227023,0.0024615296,0.0019393875,0.00072143076,0.00014096369,0.00007954233,0.001379691,0.000023451865],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000045037643,0.018696515,0.030574117,0.12129046,0.0014623896,0.000028828965,0.00023243418,4.954524e-7,0.0008403806,0.00096845033,0.008557159,0.8173037],"study_design_scores_gemma":[0.00092691195,0.00081353344,0.029753726,0.09228297,0.00038650687,0.00005092194,0.000007225924,4.6014407e-8,0.000026048414,0.00009003111,0.8752845,0.0003775854],"about_ca_topic_score_codex":0.00017425453,"about_ca_topic_score_gemma":0.00012301028,"teacher_disagreement_score":0.86672735,"about_ca_system_score_codex":0.00029721006,"about_ca_system_score_gemma":0.0011663927,"threshold_uncertainty_score":0.9996829},"labels":[],"label_agreement":null},{"id":"W2014791540","doi":"10.1007/s10096-008-0512-8","title":"Invasive pneumococcal disease in children up to 5 years of age in Poland","year":2008,"lang":"en","type":"article","venue":"European Journal of Clinical Microbiology & Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Women's Health Research Institute","funders":"","keywords":"Medical microbiology; Pneumococcal disease; Medicine; Disease; Pediatrics; Streptococcus pneumoniae; Pneumococcal infections; Immunology; Biology; Internal medicine; Antibiotics; Microbiology","score_opus":0.027103358426059848,"score_gpt":0.3168722820969155,"score_spread":0.2897689236708556,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2014791540","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984809,0.0002501317,0.000008685097,0.00023750722,0.00046765717,0.00027659952,0.00004638421,0.000016476357,0.00021565135],"genre_scores_gemma":[0.9981104,0.00039688102,0.000008425969,0.0010642924,0.00034367872,0.0000019512704,0.0000129449345,0.00002535987,0.000036047222],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9969378,0.0010357464,0.0014607746,0.00024061202,0.000071548544,0.0002535138],"domain_scores_gemma":[0.9982645,0.0004314954,0.00043380834,0.00022313256,0.00012770253,0.0005193894],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005980994,0.00016262426,0.0007689641,0.00050394516,0.000038993123,0.000005318926,0.00015975833,0.00006914136,0.000041235642],"category_scores_gemma":[0.0026438753,0.00013807851,0.00043888472,0.0003327647,0.00038408922,0.00006335525,0.00008178905,0.0005795052,0.00006108946],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044702078,0.0010314411,0.9771207,0.00001619517,0.00011824803,0.0024724207,0.00011599359,0.000099549165,0.017487602,0.000003141979,0.00029560845,0.0007920995],"study_design_scores_gemma":[0.0042367857,0.001591122,0.9912018,0.00023389803,0.00011395406,0.0009622947,0.000012222169,2.5084907e-7,0.000046455723,0.000016369866,0.0014613521,0.00012345088],"about_ca_topic_score_codex":0.000010331487,"about_ca_topic_score_gemma":0.00003040795,"teacher_disagreement_score":0.017441146,"about_ca_system_score_codex":0.000044252734,"about_ca_system_score_gemma":0.00043038162,"threshold_uncertainty_score":0.56306785},"labels":[],"label_agreement":null},{"id":"W2016188765","doi":"10.1186/1471-2334-11-314","title":"The persisting burden of invasive pneumococcal disease in HIV patients: an observational cohort study","year":2011,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"Calgary Laboratory Services; University of Calgary","keywords":"Medicine; Incidence (geometry); Pneumococcal infections; Population; Immunization; Internal medicine; Streptococcus pneumoniae; Medical microbiology; Pneumococcal polysaccharide vaccine; Cohort study; Pneumococcal vaccine; Viral load; Vaccination; Immunology; Pediatrics; Cohort; Pneumococcal disease; Environmental health; Human immunodeficiency virus (HIV); Antibiotics","score_opus":0.05708578799404092,"score_gpt":0.2898859504526848,"score_spread":0.23280016245864388,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2016188765","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99748,0.000040208997,0.000010291097,0.000025333577,0.00017116283,0.0012381239,0.000046687022,0.000079302044,0.0009089369],"genre_scores_gemma":[0.99937224,0.000010244543,0.000004816531,0.00005987513,0.00013022292,0.00028335303,0.000055144912,0.000020668122,0.000063427266],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985988,0.00020126424,0.00038535145,0.0002836178,0.00030789297,0.00022308837],"domain_scores_gemma":[0.9986442,0.00025190366,0.00014794266,0.00037522145,0.00030734987,0.00027343153],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015363733,0.00016436608,0.00024004777,0.00013928996,0.0002931555,0.000019548166,0.000105053325,0.000040035502,0.000074326366],"category_scores_gemma":[0.001224253,0.00011979757,0.00013842135,0.00029063757,0.00015619324,0.00017064139,0.000053828397,0.00013052495,0.00001577433],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014443278,0.0030524186,0.99548614,0.000057685247,0.000076299584,0.000013328203,0.0007127465,0.00012589284,0.00010008277,0.00012791777,0.000019930061,0.00008314521],"study_design_scores_gemma":[0.001549259,0.00060413044,0.99617887,0.000056458102,0.00030298834,0.0000019209167,0.00081383286,0.00015466205,0.000009482668,0.00014114715,0.00005660804,0.00013063104],"about_ca_topic_score_codex":0.00027208417,"about_ca_topic_score_gemma":0.0004747243,"teacher_disagreement_score":0.002448288,"about_ca_system_score_codex":0.000110357614,"about_ca_system_score_gemma":0.00043251392,"threshold_uncertainty_score":0.48852032},"labels":[],"label_agreement":null},{"id":"W2016201459","doi":"10.1007/s00284-014-0622-8","title":"In Vitro Activity of New Cephalosporins vs Streptococcus pneumoniae from the Canadian Bacterial Surveillance Network: 2008–2011","year":2014,"lang":"en","type":"article","venue":"Current Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"Forest Laboratories; Forest Research Institute","keywords":"Microbiology; Streptococcus pneumoniae; Trimethoprim; Erythromycin; Cephalosporin; Biology; Sulfamethoxazole; Ceftriaxone; Broth microdilution; Penicillin; Multiple drug resistance; Antibiotics; Minimum inhibitory concentration","score_opus":0.019509735705611212,"score_gpt":0.2650536830391592,"score_spread":0.245543947333548,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2016201459","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936002,0.00023358077,0.000026527756,0.0023025568,0.0030413973,0.00037233753,0.0002719901,0.000019322006,0.00013207103],"genre_scores_gemma":[0.99807656,0.000044100467,0.00000793712,0.0003347313,0.0012638991,0.000013038814,0.000186669,0.000013862268,0.000059226822],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99868786,0.00023502715,0.00028031657,0.00029788507,0.000039243543,0.00045966593],"domain_scores_gemma":[0.9990625,0.00015597651,0.00014181706,0.00038999532,0.000054403703,0.00019534653],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002242717,0.00018053871,0.00043731421,0.00007905714,0.00010746199,0.000008539556,0.00016490818,0.00018427527,0.000358572],"category_scores_gemma":[0.000066990026,0.00013066852,0.00010752413,0.00014727512,0.00016520826,0.00003772894,0.000047928013,0.0004009342,0.000094610965],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009362987,0.000081969345,0.2752998,0.000010425901,0.00003412042,0.000003550945,0.00009801907,0.000009948668,0.7092127,0.000018197716,0.010013898,0.005123708],"study_design_scores_gemma":[0.0010296317,0.00011812535,0.53770405,0.00003184949,0.000023296032,0.000014888277,0.0000035915155,0.000014239541,0.01166074,0.00003605616,0.44923085,0.00013269033],"about_ca_topic_score_codex":0.035506517,"about_ca_topic_score_gemma":0.29646266,"teacher_disagreement_score":0.697552,"about_ca_system_score_codex":0.00013409622,"about_ca_system_score_gemma":0.0005873517,"threshold_uncertainty_score":0.97091615},"labels":[],"label_agreement":null},{"id":"W2016459812","doi":"10.1111/j.1365-2710.2004.00553.x","title":"Appropriate antibiotic utilization in seniors prior to hospitalization for community-acquired pneumonia is associated with decreased in-hospital mortality","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Pharmacy and Therapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Saskatchewan; Alberta Health; University of Alberta","funders":"","keywords":"Medicine; Medical prescription; Antibiotics; Pneumonia; Odds ratio; Community-acquired pneumonia; Emergency medicine; Intensive care medicine; Pediatrics; Internal medicine","score_opus":0.11974471515048113,"score_gpt":0.43837375531233885,"score_spread":0.3186290401618577,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2016459812","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953042,0.000070524766,0.0011983847,0.0025241543,0.00024722313,0.0006068578,0.000009355008,0.000013126925,0.000026171787],"genre_scores_gemma":[0.99647796,0.00036289293,0.00014713804,0.00288804,0.000085715925,0.0000034807904,0.000008031444,0.000020972611,0.0000057519],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981929,0.00025216956,0.0010232284,0.00012934707,0.00021780012,0.00018457504],"domain_scores_gemma":[0.99862325,0.00028112205,0.00047534885,0.00013025284,0.00029878525,0.00019120962],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013542102,0.00014457565,0.000528318,0.0001704686,0.000102745886,0.000025321093,0.000080729544,0.000112191956,0.0000027250328],"category_scores_gemma":[0.00039791546,0.00010805241,0.0001273707,0.00039050326,0.00009898666,0.00015689016,0.000016093509,0.00041698036,5.8241784e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012006708,0.004424178,0.9775357,0.00007717804,0.00039108002,0.000051500887,0.001651059,0.00034233442,0.0035291351,0.000039481423,0.0000043818504,0.010753278],"study_design_scores_gemma":[0.016494,0.0041814656,0.9730454,0.0005299567,0.00043211388,0.000030240133,0.00027241354,0.0010134011,0.0019697584,0.0007548136,0.0010951892,0.00018125986],"about_ca_topic_score_codex":0.000025463358,"about_ca_topic_score_gemma":0.00007572559,"teacher_disagreement_score":0.01529333,"about_ca_system_score_codex":0.00008031617,"about_ca_system_score_gemma":0.00028167086,"threshold_uncertainty_score":0.44062492},"labels":[],"label_agreement":null},{"id":"W2017007825","doi":"10.1074/jbc.m708105200","title":"Characterization of tRNA-dependent Peptide Bond Formation by MurM in the Synthesis of Streptococcus pneumoniae Peptidoglycan","year":2007,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Medical Research Council; Directorate for Biological Sciences; University of Leicester; University of Warwick; Wellcome Trust","keywords":"Peptidoglycan; Biochemistry; Peptide; Alanine; Serine; Biology; Amino acid; Chemistry; Enzyme","score_opus":0.01728729540087055,"score_gpt":0.2630325111497197,"score_spread":0.24574521574884917,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2017007825","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982805,0.00004114804,0.00015089643,0.000365783,0.000031301868,0.00011714216,0.00002293294,0.0000044125914,0.0009858579],"genre_scores_gemma":[0.9996217,0.00012503339,0.000014439191,0.000086284745,0.00010467677,0.0000039628617,0.000010668827,0.0000041287867,0.000029117618],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987446,0.00003788472,0.00076175353,0.00007790122,0.00024169049,0.00013618523],"domain_scores_gemma":[0.998799,0.00016766568,0.00070332695,0.00012084057,0.00014138508,0.00006777155],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007327773,0.000098708006,0.00031127274,0.000058035213,0.000027471979,0.000005341651,0.00012469421,0.00016004719,0.000048110498],"category_scores_gemma":[0.00029745832,0.000055213328,0.00015024876,0.00015725172,0.000089020796,0.00006803781,0.000014865775,0.0002842495,7.607364e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008247112,0.00030726087,0.05109162,0.00008144492,0.000021516144,0.000021362986,0.00010412635,0.0000014264854,0.9467814,0.0000022447298,0.00004271508,0.0014624441],"study_design_scores_gemma":[0.00038724355,0.00026668675,0.15291639,0.00013364674,0.000037063444,0.00020559621,0.0005238153,0.0000047143476,0.84468937,0.000010423982,0.0007735001,0.000051555056],"about_ca_topic_score_codex":0.0000028898,"about_ca_topic_score_gemma":0.0000018855449,"teacher_disagreement_score":0.102092,"about_ca_system_score_codex":0.000060109793,"about_ca_system_score_gemma":0.000043144904,"threshold_uncertainty_score":0.22515342},"labels":[],"label_agreement":null},{"id":"W2018022563","doi":"10.1378/chest.128.4.1980","title":"Five-Day Telithromycin Once Daily Is as Effective as 10-Day Clarithromycin Twice Daily for the Treatment of Acute Exacerbations of Chronic Bronchitis and Is Associated With Reduced Health-Care Resource Utilization","year":2005,"lang":"en","type":"article","venue":"CHEST Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Telithromycin; Chronic bronchitis; Bronchitis; Day care; Clarithromycin; Intensive care medicine; Internal medicine; Emergency medicine; Nursing","score_opus":0.020077223453771664,"score_gpt":0.3167795279149641,"score_spread":0.29670230446119245,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018022563","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9797657,0.005657706,0.0013220363,0.010838337,0.00009327523,0.0015765656,0.00017798471,0.000032872562,0.00053549564],"genre_scores_gemma":[0.99527276,0.0019317226,0.00017244306,0.00085009704,0.0003380247,0.0000884241,0.0000491671,0.00004136257,0.0012560252],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9983777,0.00023499102,0.0004991394,0.00027230885,0.0003125207,0.00030338473],"domain_scores_gemma":[0.9979928,0.00051547826,0.0005710079,0.0002766607,0.0004466622,0.00019736131],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037395835,0.00024011913,0.00052157725,0.00014298107,0.0005994685,0.0000343008,0.0000897147,0.0001559326,0.00013467112],"category_scores_gemma":[0.00013710979,0.00015743659,0.00017057575,0.00034594044,0.00023739098,0.00014171364,0.000014847187,0.00026619327,0.0000049052032],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023673687,0.0056350576,0.019079724,0.0010540294,0.013364027,0.00008021009,0.21289182,0.0021086936,0.21055117,0.00022710278,0.019613432,0.51302737],"study_design_scores_gemma":[0.021565387,0.041183963,0.5442348,0.0026800167,0.004194392,0.0013502878,0.008328662,0.0016290252,0.14301017,0.00006745445,0.23113307,0.0006227669],"about_ca_topic_score_codex":0.00007360226,"about_ca_topic_score_gemma":0.000100804165,"teacher_disagreement_score":0.52515507,"about_ca_system_score_codex":0.00095849246,"about_ca_system_score_gemma":0.0008115423,"threshold_uncertainty_score":0.6420078},"labels":[],"label_agreement":null},{"id":"W2018380906","doi":"10.1093/jac/dki118","title":"Genetic analysis of pbp2x in clinical Streptococcus pneumoniae isolates in Quebec, Canada","year":2005,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Centre Hospitalier de l’Université de Montréal","funders":"","keywords":"Penicillin; Streptococcus pneumoniae; Penicillin binding proteins; Microbiology; Biology; Antibiotics","score_opus":0.01022847334680533,"score_gpt":0.2920699585638829,"score_spread":0.2818414852170776,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018380906","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923907,0.00009433774,0.00002718828,0.007131065,0.00014401836,0.00013187005,0.000005805041,0.0000035582823,0.00007145837],"genre_scores_gemma":[0.99581194,0.00052293093,0.00019275075,0.0031323181,0.00020560445,6.925601e-7,0.0000013038325,0.000015098063,0.000117373515],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998016,0.00008414628,0.0013787745,0.00014436364,0.00016545149,0.00021128329],"domain_scores_gemma":[0.9989292,0.00009059401,0.00051355147,0.0001779413,0.00014780677,0.0001409243],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031226175,0.00014126429,0.0008422882,0.0006771215,0.000018514162,0.000010496174,0.00012385928,0.00013054612,0.00016094293],"category_scores_gemma":[0.000060209182,0.0001160135,0.0003721629,0.0008804303,0.00006984996,0.00007768665,0.000009958416,0.00042565653,0.0000010751859],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012683039,0.00055549445,0.74417007,0.000017034934,0.00052363024,0.00007846639,0.00016546455,0.0019502741,0.24630664,6.891356e-7,0.0016138406,0.004491531],"study_design_scores_gemma":[0.002861895,0.00017912143,0.9725404,0.00012622983,0.00027485966,0.00003909408,0.00004976416,0.00059981947,0.009357931,0.0000013719023,0.013848892,0.000120662364],"about_ca_topic_score_codex":0.06836402,"about_ca_topic_score_gemma":0.8334949,"teacher_disagreement_score":0.7651309,"about_ca_system_score_codex":0.00025108093,"about_ca_system_score_gemma":0.0012211398,"threshold_uncertainty_score":0.9378398},"labels":[],"label_agreement":null},{"id":"W2018680425","doi":"10.1016/j.clinthera.2006.08.013","title":"Levofloxacin 750 mg QD for five days versus amoxicillin/clavulanate 875 mg/125 mg BID for ten days for treatment of acute bacterial exacerbation of chronic bronchitis: A post hoc analysis of data from severely ill patients","year":2006,"lang":"en","type":"article","venue":"Clinical Therapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Credit Valley Hospital","funders":"","keywords":"Medicine; Levofloxacin; Exacerbation; Post-hoc analysis; Chronic bronchitis; Amoxicillin; Post hoc; Bronchitis; Internal medicine; Antibiotics; Microbiology","score_opus":0.1206712977328633,"score_gpt":0.40495823263159864,"score_spread":0.28428693489873536,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018680425","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9623705,0.000238942,0.005011791,0.00029474063,0.00076500745,0.0019504298,0.029303685,0.000026951846,0.000037953334],"genre_scores_gemma":[0.97829527,0.00075390714,0.0019958098,0.0002842802,0.0007545135,0.0001387054,0.017548887,0.00006198171,0.00016661959],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99736285,0.000108838576,0.001447217,0.0005435987,0.0002251616,0.00031232674],"domain_scores_gemma":[0.9955728,0.001711306,0.00088153785,0.0009120678,0.00082222576,0.000100049736],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002938908,0.0002831429,0.0012562111,0.00020968929,0.00009494713,0.000011902275,0.00025707245,0.00034991576,0.000045014607],"category_scores_gemma":[0.00016868571,0.00022406131,0.0008063794,0.0003033876,0.00022926928,0.000113573726,0.000055321892,0.00008414285,0.000001959199],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.12753588,0.038152747,0.114050604,0.0014193857,0.1401833,0.000009666177,0.0017606637,0.0020977268,0.37851518,0.00069185125,0.004364305,0.19121869],"study_design_scores_gemma":[0.13175678,0.09481604,0.41774532,0.00039687488,0.10186158,0.0000016853621,0.0003018504,0.115711465,0.017360197,0.00075692555,0.11805506,0.0012362282],"about_ca_topic_score_codex":0.00014692351,"about_ca_topic_score_gemma":0.0004633082,"teacher_disagreement_score":0.36115497,"about_ca_system_score_codex":0.000188199,"about_ca_system_score_gemma":0.00030648868,"threshold_uncertainty_score":0.9136955},"labels":[],"label_agreement":null},{"id":"W2018720593","doi":"10.1016/s1386-6532(07)70013-6","title":"Value of RVP in clinical settings: intensive care","year":2007,"lang":"en","type":"review","venue":"Journal of Clinical Virology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Value (mathematics); Intensive care medicine; Medicine; Mathematics; Statistics","score_opus":0.21795053892943114,"score_gpt":0.5715849140864774,"score_spread":0.3536343751570462,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018720593","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.011161494,0.9828567,0.000035713867,0.00080471457,0.0038499648,0.00043534744,0.000013136684,0.000008965528,0.0008339889],"genre_scores_gemma":[0.0009916864,0.9909833,0.00016025767,0.005207964,0.0025556667,0.0000029888313,0.000006673491,0.00004215671,0.00004929724],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9880968,0.0016492464,0.009222446,0.0003443633,0.00034207513,0.000345118],"domain_scores_gemma":[0.98645,0.0061576995,0.0050712037,0.0004256572,0.0014969171,0.00039849442],"candidate_categories":["metaresearch","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0058279,0.00033264174,0.007238817,0.00069354783,0.000025465055,0.0000040481727,0.00031106273,0.0021767484,0.000061820436],"category_scores_gemma":[0.018961873,0.00021767242,0.0036372936,0.000366516,0.0006565479,0.00004235301,0.000111586814,0.005319255,0.000044856115],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003201195,0.0005432175,0.022454944,0.004843445,0.0008692125,0.0017240815,0.0000748043,0.0000018070282,0.0000017833044,0.000052981646,0.0014745014,0.9676391],"study_design_scores_gemma":[0.0021083222,0.004876313,0.014073829,0.00959911,0.0024353103,0.0022576158,0.0001724316,0.0000014941298,3.3992583e-7,0.000038979044,0.96428823,0.00014803211],"about_ca_topic_score_codex":0.0000030789206,"about_ca_topic_score_gemma":0.000007889915,"teacher_disagreement_score":0.9674911,"about_ca_system_score_codex":0.000084196,"about_ca_system_score_gemma":0.0018260982,"threshold_uncertainty_score":0.9991186},"labels":[],"label_agreement":null},{"id":"W2019163525","doi":"10.1186/cc10500","title":"Severity of community-acquired pneumonia treated with low-dose adjunctive corticosteroid","year":2011,"lang":"en","type":"letter","venue":"Critical Care","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Christie (Canada)","funders":"","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Corticosteroid; Intensive care medicine; Emergency medicine; Internal medicine","score_opus":0.036555476323800205,"score_gpt":0.2955435190432223,"score_spread":0.2589880427194221,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2019163525","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.90400803,0.0003724209,0.000026532416,0.077199355,0.0005421546,0.0011760389,0.0010370042,0.00031467833,0.015323783],"genre_scores_gemma":[0.82492864,0.000006618633,0.000021150454,0.17349687,0.00044985273,0.000080329795,0.00064733165,0.00008904642,0.0002801625],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.99793625,0.00043585975,0.00043662038,0.00031018956,0.0004008839,0.00048022252],"domain_scores_gemma":[0.99726623,0.00032713663,0.00010657694,0.0009848209,0.0010863832,0.00022887753],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00006627658,0.0004526086,0.00095857494,0.0001906366,0.00024813975,0.000020945434,0.00020040422,0.0008986303,0.00023100627],"category_scores_gemma":[0.00024633735,0.00034411732,0.0002603892,0.00024534075,0.0010792521,0.00008062951,0.00009886407,0.0023957547,0.000045851924],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0053778873,0.008231904,0.19937241,0.079918675,0.004857152,0.03426387,0.035714123,0.000002450157,0.12750489,0.0003219906,0.49293575,0.011498889],"study_design_scores_gemma":[0.009699257,0.020700201,0.50313234,0.007009665,0.009913013,0.003401639,0.007695408,0.000011315551,0.017985344,0.00023633396,0.41711584,0.0030996387],"about_ca_topic_score_codex":0.00020868865,"about_ca_topic_score_gemma":0.00003751456,"teacher_disagreement_score":0.30375993,"about_ca_system_score_codex":0.00017693639,"about_ca_system_score_gemma":0.0002606216,"threshold_uncertainty_score":0.99990577},"labels":[],"label_agreement":null},{"id":"W2019369648","doi":"10.1128/aac.01311-13","title":"Genomic Analyses of DNA Transformation and Penicillin Resistance in Streptococcus pneumoniae Clinical Isolates","year":2013,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Centre hospitalier de l'Université Laval","funders":"Canadian Institutes of Health Research; Université Laval","keywords":"Penicillin; Biology; Microbiology; Streptococcus pneumoniae; Penicillin binding proteins; Genome; Transformation (genetics); Antibiotic resistance; Genetics; Antibiotics; Drug resistance; Virology; Gene","score_opus":0.03557144026207766,"score_gpt":0.3372893235741623,"score_spread":0.30171788331208466,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2019369648","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99566966,0.000055846915,0.000025234729,0.003438546,0.000038261882,0.00039970028,0.000007547943,0.000013340931,0.00035183],"genre_scores_gemma":[0.9946365,0.0025561638,0.000057914334,0.0025769065,0.000034750043,0.0000073645524,0.000006517514,0.000011378622,0.0001125346],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991794,0.00003349444,0.00042530525,0.00017665827,0.00004825939,0.00013686006],"domain_scores_gemma":[0.9996586,0.00002782064,0.00009464655,0.00011049544,0.000042111147,0.0000663405],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009860972,0.00011411088,0.0003056068,0.000091734386,0.000049322858,0.000019207533,0.000035403395,0.0000969528,0.00008751474],"category_scores_gemma":[0.0000062504155,0.000089776324,0.00007475547,0.00010577105,0.00011687515,0.00010116886,0.000008237375,0.000112902635,0.0000058146834],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047315345,0.00020271656,0.41368866,0.00009471508,0.00007616836,0.0000019001315,0.0005154601,0.0000012785238,0.5797392,0.000013027484,0.00085591647,0.004763601],"study_design_scores_gemma":[0.0020062935,0.00013720112,0.97649294,0.000098360615,0.000038389862,0.0000060325606,0.000061502804,0.00011218605,0.014273843,0.000053555297,0.0066135162,0.00010620381],"about_ca_topic_score_codex":0.0000625952,"about_ca_topic_score_gemma":0.00005325228,"teacher_disagreement_score":0.5654654,"about_ca_system_score_codex":0.000011827731,"about_ca_system_score_gemma":0.00002795835,"threshold_uncertainty_score":0.3660972},"labels":[],"label_agreement":null},{"id":"W2019488451","doi":"10.1161/circulationaha.111.040766","title":"Cardiac Complications in Patients With Community-Acquired Pneumonia","year":2012,"lang":"en","type":"article","venue":"Circulation","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":421,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; University of Ottawa","funders":"","keywords":"Medicine; Pneumonia; Heart failure; Odds ratio; Myocardial infarction; Community-acquired pneumonia; Internal medicine; Incidence (geometry); Coronary artery disease; Confidence interval; Cardiology","score_opus":0.024257029103368428,"score_gpt":0.26709902475424824,"score_spread":0.2428419956508798,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2019488451","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99615866,0.000020008905,0.00016983601,0.00016476664,0.000103283426,0.00035474985,0.0000061827686,0.000052306805,0.0029701847],"genre_scores_gemma":[0.99946034,9.538767e-7,0.00003074608,0.00023082651,0.00004640936,0.00003718691,0.00017188523,0.000012282915,0.000009379857],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99943984,0.00009744351,0.00013183954,0.00006467594,0.00011676544,0.00014945134],"domain_scores_gemma":[0.9994869,0.000032287273,0.000044718752,0.0002729779,0.00007839582,0.000084716485],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012042584,0.00007077576,0.00012248912,0.00010769242,0.00016555592,0.000007040218,0.000028184384,0.000051178038,0.000010145599],"category_scores_gemma":[0.000019169334,0.0000609185,0.000032723936,0.00024702496,0.000038755305,0.00014909478,0.000010670376,0.00012375967,0.000052489046],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000074294503,0.0003512324,0.9927549,0.000016142656,0.00001585087,8.7646505e-8,0.0003669919,0.00004660475,0.005684528,0.00017008092,0.000010270586,0.00057589816],"study_design_scores_gemma":[0.00060527347,0.000038044916,0.9973433,0.000035911882,0.000034158853,0.0000018209229,0.000053905198,0.000037589198,0.000031057658,0.00001639537,0.001732281,0.000070284696],"about_ca_topic_score_codex":0.000033538265,"about_ca_topic_score_gemma":0.000006554007,"teacher_disagreement_score":0.0056534703,"about_ca_system_score_codex":0.00010346568,"about_ca_system_score_gemma":0.000022765345,"threshold_uncertainty_score":0.24841845},"labels":[],"label_agreement":null},{"id":"W2019739563","doi":"10.1016/s0732-8893(02)00444-3","title":"Safety and efficacy of gatifloxacin in community-acquired pneumonia: rationale for the Tequin Clinical Experience Study (TeqCES)","year":2002,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Gatifloxacin; Pneumonia; Medicine; Community-acquired pneumonia; Intensive care medicine; Internal medicine; Microbiology; Antibiotics; Biology","score_opus":0.03389717449861117,"score_gpt":0.32419587075609474,"score_spread":0.29029869625748356,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2019739563","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964373,0.0009458027,0.00008470126,0.0006638844,0.0001778857,0.0015368953,0.00005942426,0.000023957175,0.00007012911],"genre_scores_gemma":[0.9981233,0.0007737541,0.0000038554867,0.00078461063,0.000052969954,0.00019280578,0.000022317645,0.000009097417,0.00003732741],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99869347,0.00042946203,0.00046038828,0.00021389771,0.000033245742,0.00016952744],"domain_scores_gemma":[0.9931156,0.0063249907,0.00010157237,0.0002661079,0.00006728358,0.0001244285],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043320714,0.000137642,0.00033114463,0.00008338154,0.00038520322,0.000010008178,0.00006499524,0.00009185679,0.00005701271],"category_scores_gemma":[0.0035627708,0.00009690075,0.00007478825,0.00013900502,0.0006212192,0.000048209342,0.00006343077,0.00022137511,0.000003730047],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021291926,0.0029064289,0.987423,0.000059000595,0.000088311244,0.000012515282,0.0021222252,0.000026839027,0.0050198776,0.00009807614,0.00011487909,0.0019159433],"study_design_scores_gemma":[0.0049927495,0.0013541956,0.9899308,0.00006192182,0.00020241112,0.000051240568,0.0007651803,0.00017409814,0.00005337938,0.000041433057,0.0022618207,0.00011075481],"about_ca_topic_score_codex":0.0000406698,"about_ca_topic_score_gemma":0.0001542974,"teacher_disagreement_score":0.0058955285,"about_ca_system_score_codex":0.000018170305,"about_ca_system_score_gemma":0.000037434373,"threshold_uncertainty_score":0.42652267},"labels":[],"label_agreement":null},{"id":"W2019822176","doi":"10.1086/421352","title":"Increased Antibiotic Resistance in Respiratory Tract Pathogens: PROTEKT US—An Update","year":2004,"lang":"en","type":"review","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Streptococcus pneumoniae; Telithromycin; Ketolide; Medicine; Respiratory tract infections; Antibiotic resistance; Antibiotics; Microbiology; Penicillin; Pneumococcal infections; Drug resistance; Sulfamethoxazole; Antimicrobial; Trimethoprim; Antibacterial agent; Moraxella catarrhalis; Biology; Internal medicine; Respiratory system","score_opus":0.07920610889295908,"score_gpt":0.4188149163066889,"score_spread":0.3396088074137298,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2019822176","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.012549231,0.9809416,0.000008477882,0.000048448957,0.0008238058,0.003610564,0.00039742337,0.0005720678,0.0010483786],"genre_scores_gemma":[0.00942636,0.9867173,0.00001037265,0.0017327601,0.0011407181,0.00038035796,0.00031175136,0.00020645846,0.00007392413],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9931151,0.0016547579,0.0026415475,0.0014229493,0.00043983533,0.0007257549],"domain_scores_gemma":[0.99551594,0.00069575163,0.0009273847,0.0015155975,0.00019442846,0.0011509233],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009488561,0.0008979994,0.0037742339,0.0007206807,0.00024674463,0.00009748474,0.0003115928,0.0011827082,0.00013024104],"category_scores_gemma":[0.0026843457,0.000725926,0.0019219627,0.0011768653,0.0005535,0.00024469654,0.00009620271,0.0018842084,0.00049144047],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013098372,0.027877225,0.49641764,0.08329867,0.0011490296,0.0058614574,0.00002347404,0.0000094704665,0.000013267369,0.00062258635,0.0007370455,0.38385916],"study_design_scores_gemma":[0.0024024292,0.0010390203,0.16025625,0.029570863,0.0032471516,0.00005156496,0.0000037447242,7.7069694e-7,4.6115917e-7,0.0003752728,0.80223584,0.00081662537],"about_ca_topic_score_codex":0.000027976665,"about_ca_topic_score_gemma":0.00022937897,"teacher_disagreement_score":0.80149883,"about_ca_system_score_codex":0.00062551536,"about_ca_system_score_gemma":0.00390363,"threshold_uncertainty_score":0.99951917},"labels":[],"label_agreement":null},{"id":"W2020131469","doi":"10.1093/jac/dkv061","title":"Assessment of multidrug resistance, clonality and virulence in non-PCV-13 <i>Streptococcus pneumoniae</i> serotypes in Canada, 2011–13","year":2015,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Shared Health; Health Sciences Centre; Public Health Agency of Canada; University of Manitoba","funders":"Pfizer Canada; Public Health Agency of Canada; Diagnostic Services Manitoba; University of Manitoba; Pfizer; Manitoba Health Research Council; GlaxoSmithKline","keywords":"Serotype; Streptococcus pneumoniae; Multilocus sequence typing; Microbiology; Biology; Virology; Virulence; Pulsed-field gel electrophoresis; Molecular epidemiology; Multiple drug resistance; Pneumococcal infections; Drug resistance; Genotype; Antibiotics; Genetics; Gene","score_opus":0.01118313438571363,"score_gpt":0.2739785345339788,"score_spread":0.2627954001482652,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2020131469","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953912,0.00009050186,0.00002944691,0.0034321996,0.00021040822,0.00025305513,0.000017330767,0.0000034393613,0.00057241064],"genre_scores_gemma":[0.9976507,0.00042279443,0.00032228007,0.0014082928,0.00008485997,0.0000023805626,0.0000013251031,0.000016569149,0.00009080245],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985153,0.00007376295,0.00073178974,0.00016492969,0.00029570732,0.00021847476],"domain_scores_gemma":[0.9989405,0.000052689695,0.00042555557,0.0001681216,0.00023656517,0.00017656756],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005082365,0.0001647473,0.00057075964,0.00019523327,0.000026705035,0.00001145003,0.00011327794,0.00008525218,0.000017662442],"category_scores_gemma":[0.000027646456,0.00013656798,0.000081728984,0.00021261178,0.00008568139,0.00013894743,0.00001870206,0.00042300316,7.2152216e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014916828,0.00023421818,0.6299388,0.000074616655,0.000035592868,0.00009635944,0.00017670187,0.000117852534,0.36651263,0.0000023220682,0.00241692,0.00024485844],"study_design_scores_gemma":[0.0052963495,0.00019913459,0.9473639,0.0004911633,0.000023504754,0.00011259978,0.00014103488,0.00011464581,0.04229808,0.00002189632,0.0037816055,0.00015604911],"about_ca_topic_score_codex":0.070951566,"about_ca_topic_score_gemma":0.38058093,"teacher_disagreement_score":0.32421455,"about_ca_system_score_codex":0.00043919438,"about_ca_system_score_gemma":0.0022810719,"threshold_uncertainty_score":0.935235},"labels":[],"label_agreement":null},{"id":"W2020131491","doi":"10.1016/j.vaccine.2009.09.057","title":"Cost-effectiveness of a 3-dose pneumococcal conjugate vaccine program in the province of Quebec, Canada","year":2009,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval; Université de Sherbrooke","funders":"GlaxoSmithKline","keywords":"Pneumococcal conjugate vaccine; Cost–benefit analysis; Medicine; Environmental health; Health care; Demography; Economic growth; Economics; Political science; Biology; Streptococcus pneumoniae","score_opus":0.017266611594764163,"score_gpt":0.2988699740528634,"score_spread":0.28160336245809925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2020131491","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939862,0.00014324365,0.000017630877,0.0027503558,0.00008992729,0.002490741,0.000010989948,0.000031045594,0.0004798807],"genre_scores_gemma":[0.9992775,0.000019856554,0.000014312865,0.00039181137,0.000051127452,0.000115179086,0.000015068847,0.000010498904,0.000104656014],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99871,0.00018867318,0.00042288404,0.00019933669,0.00023168843,0.0002474217],"domain_scores_gemma":[0.9990479,0.00019427278,0.00014745138,0.0003756168,0.00015253,0.00008227746],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003781762,0.00016467346,0.00047619647,0.00012298643,0.000039312723,0.0000057984757,0.00014259713,0.0000708067,0.000022660566],"category_scores_gemma":[0.00013328978,0.000103549704,0.000078294644,0.0005218646,0.000012731811,0.000055963843,0.00001777073,0.00024358454,0.0000014532428],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022154548,0.0048224996,0.34133473,0.0012912273,0.00018574284,0.00068894605,0.00031895185,0.00035580568,0.58958787,0.00088853366,0.0018462089,0.056464024],"study_design_scores_gemma":[0.003357084,0.0011716131,0.97045165,0.00027286183,0.00007384246,0.000059740785,0.00007301941,0.00009022376,0.015331104,0.000040706196,0.00897165,0.00010650871],"about_ca_topic_score_codex":0.097143546,"about_ca_topic_score_gemma":0.5997984,"teacher_disagreement_score":0.6291169,"about_ca_system_score_codex":0.00012825028,"about_ca_system_score_gemma":0.00085553416,"threshold_uncertainty_score":0.9088687},"labels":[],"label_agreement":null},{"id":"W2020483434","doi":"10.1016/j.ijantimicag.2004.03.008","title":"A review of clinical failures associated with macrolide-resistant Streptococcus pneumoniae","year":2004,"lang":"en","type":"review","venue":"International Journal of Antimicrobial Agents","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Manitoba; Health Sciences Centre","funders":"","keywords":"Medicine; Streptococcus pneumoniae; Sputum; Community-acquired pneumonia; Internal medicine; Pneumonia; Antibiotics; Pneumococcal pneumonia; Intensive care medicine; Microbiology; Tuberculosis; Pathology","score_opus":0.0722476676671629,"score_gpt":0.43104069380064114,"score_spread":0.35879302613347824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2020483434","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0009803126,0.99416435,0.000024911757,0.0012690368,0.0019325396,0.0008989916,0.00037903353,0.000020655494,0.00033017056],"genre_scores_gemma":[0.0008590608,0.99656266,0.00005651964,0.0016344488,0.00058659405,0.0000067491887,0.00010752834,0.00005559024,0.00013085947],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99510103,0.00029716032,0.0032457132,0.0002839245,0.00083288905,0.0002392618],"domain_scores_gemma":[0.9924595,0.00019939982,0.004579147,0.00025633918,0.0022781256,0.00022748782],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00087368145,0.00041530686,0.0030074655,0.00048265967,0.000045305627,0.00003613021,0.0005857679,0.00033612608,0.00019528261],"category_scores_gemma":[0.0011150838,0.00026704234,0.0020541607,0.00032632326,0.0001935202,0.00011668259,0.00009596898,0.0010503433,0.00002667828],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007772623,0.009534607,0.0050074235,0.23122089,0.046982884,0.0133933285,0.00010392122,0.000030111398,0.00087434077,0.00009316583,0.06932207,0.62266],"study_design_scores_gemma":[0.0012201674,0.0004344271,0.00048164994,0.3900917,0.0023974867,0.0010705376,0.0000019305025,1.7645488e-7,0.000011216442,0.000002818517,0.6041286,0.00015927687],"about_ca_topic_score_codex":0.000011771661,"about_ca_topic_score_gemma":0.0000089585565,"teacher_disagreement_score":0.6225007,"about_ca_system_score_codex":0.000343455,"about_ca_system_score_gemma":0.0026089288,"threshold_uncertainty_score":0.9999782},"labels":[],"label_agreement":null},{"id":"W2020985995","doi":"10.1016/s0732-8893(01)00209-7","title":"Activity of oral agents against pediatric isolates of Streptococcus pneumoniae","year":2001,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Bayer Canada; Bayer Corporation; Pfizer","keywords":"Moxifloxacin; Levofloxacin; Streptococcus pneumoniae; Microbiology; Penicillin; Antibacterial agent; Streptococcaceae; Ofloxacin; Medicine; In vitro; Antibiotics; Biology; Ciprofloxacin","score_opus":0.011076389202374623,"score_gpt":0.2615128496750573,"score_spread":0.25043646047268264,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2020985995","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998042,0.00043479196,0.000036417638,0.00014882928,0.00020541152,0.00043292303,0.00011947026,0.000046948444,0.0005332223],"genre_scores_gemma":[0.99771565,0.001805972,0.000001962949,0.00029230292,0.000058206984,0.0000330669,0.000037118065,0.000013031921,0.000042695574],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99911094,0.00009401232,0.0002811352,0.00025034032,0.000036037207,0.00022752598],"domain_scores_gemma":[0.9989157,0.0003647024,0.00017343696,0.00021816637,0.00011406029,0.00021398242],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008758214,0.00017484787,0.0003775797,0.00020449555,0.00009478976,0.0000041711032,0.000046798596,0.00013781142,0.00010578442],"category_scores_gemma":[0.0006724259,0.00014812905,0.00013839641,0.00024523502,0.0002426592,0.00006105601,0.000049747596,0.00016704657,0.000013707499],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058025813,0.000856879,0.8730241,0.0001591847,0.0000888685,0.00004745108,0.000036504152,0.000023442937,0.124111824,0.000028642316,0.00021297664,0.0013520785],"study_design_scores_gemma":[0.001421663,0.00059784413,0.9922889,0.000057491627,0.00043966036,0.00006299485,0.000011080386,0.00003186252,0.0027489231,0.000062464416,0.0021196767,0.0001574453],"about_ca_topic_score_codex":0.000025324769,"about_ca_topic_score_gemma":0.000015219296,"teacher_disagreement_score":0.1213629,"about_ca_system_score_codex":0.000021931375,"about_ca_system_score_gemma":0.00012718538,"threshold_uncertainty_score":0.6040527},"labels":[],"label_agreement":null},{"id":"W2021276327","doi":"10.1378/chest.118.5.1339","title":"Applying a Prediction Rule To Identify Low-Risk Patients With Community-Acquired Pneumonia","year":2000,"lang":"en","type":"article","venue":"CHEST Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":94,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"","keywords":"Medicine; Psychosocial; Clinical prediction rule; Community-acquired pneumonia; Retrospective cohort study; Population; Medical record; Pneumonia; Cohort; Emergency medicine; Internal medicine; Environmental health; Psychiatry","score_opus":0.013837242533586877,"score_gpt":0.2715546760540154,"score_spread":0.25771743352042853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2021276327","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970774,0.000018361568,0.00028304316,0.00021614724,0.00023626548,0.0004414701,0.000021875698,0.00008131842,0.0016241283],"genre_scores_gemma":[0.998296,0.000045443867,0.00016349168,0.0006827556,0.00032499884,0.00006267676,0.00001977747,0.000031806478,0.00037303806],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987811,0.00015634208,0.0003112063,0.00012780039,0.0003412378,0.00028230893],"domain_scores_gemma":[0.99898976,0.000036646547,0.000114824754,0.00028563803,0.00017293046,0.00040018704],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031692346,0.00015904012,0.00022232789,0.00017059672,0.001001056,0.000092080525,0.000114912225,0.0000871922,0.0003380995],"category_scores_gemma":[0.000053099855,0.00011962824,0.000090148074,0.00030002085,0.00006114929,0.00020412343,0.000022082859,0.0007456401,0.00023716994],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022154245,0.00080183113,0.93391013,0.0000806769,0.00014469898,0.000043635337,0.0011753192,0.00027205193,0.023228042,7.026064e-7,0.0004668308,0.03965453],"study_design_scores_gemma":[0.0019977903,0.0007399469,0.9635102,0.0003308876,0.00014766579,0.00037108143,0.00019429703,0.000034094242,0.00044206902,0.000025919204,0.032077916,0.00012814274],"about_ca_topic_score_codex":0.000022249587,"about_ca_topic_score_gemma":0.000009454975,"teacher_disagreement_score":0.039526388,"about_ca_system_score_codex":0.00014583943,"about_ca_system_score_gemma":0.000088473,"threshold_uncertainty_score":0.7699415},"labels":[],"label_agreement":null},{"id":"W2021887135","doi":"10.1097/inf.0b013e3182624a40","title":"Eradication of Invasive Pneumococcal Disease due to the Seven-valent Pneumococcal Conjugate Vaccine Serotypes in Calgary, Alberta","year":2012,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Health Services; Institute of Population and Public Health; Calgary Laboratory Services; University of Alberta; University of Calgary","funders":"","keywords":"Pneumococcal disease; Serotype; Pneumococcal conjugate vaccine; Streptococcus pneumoniae; Virology; Medicine; Pneumococcal infections; Conjugate; Conjugate vaccine; Immunology; Microbiology; Biology; Antibiotics; Mathematics","score_opus":0.010067289018612929,"score_gpt":0.2567112210978656,"score_spread":0.24664393207925267,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2021887135","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9865749,0.00080758304,0.0001315878,0.009852038,0.0009213576,0.0012114438,0.000023197139,0.00003767313,0.0004402321],"genre_scores_gemma":[0.99500465,0.000626255,0.0000050842505,0.0013000905,0.0026886659,0.00015683989,0.000009453163,0.000041567124,0.00016736532],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.997442,0.00047186366,0.0007390175,0.00023945232,0.0004882848,0.0006194035],"domain_scores_gemma":[0.99699277,0.0005495317,0.0003636244,0.00054681656,0.00023841069,0.00130887],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00081895816,0.00030660213,0.00041258358,0.0004236368,0.0005024414,0.000045454733,0.0002602066,0.00008868155,0.00017885375],"category_scores_gemma":[0.0012321388,0.00017758126,0.0003296136,0.00085519283,0.00007704237,0.00023183522,0.00011619757,0.0008086272,0.00018541713],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040018267,0.0010132828,0.99399483,0.00012577177,0.000101524434,0.000077165634,0.00085827947,0.0008126536,0.0012411631,0.0001424024,0.0008681884,0.00036458118],"study_design_scores_gemma":[0.0013770883,0.00024029802,0.99361485,0.000062466745,0.001009559,0.00090758124,0.000070940354,0.00014078002,0.000053394553,0.00030403194,0.0020048574,0.00021413525],"about_ca_topic_score_codex":0.0001486372,"about_ca_topic_score_gemma":0.00020525779,"teacher_disagreement_score":0.008551948,"about_ca_system_score_codex":0.0002487322,"about_ca_system_score_gemma":0.0008194831,"threshold_uncertainty_score":0.72415537},"labels":[],"label_agreement":null},{"id":"W2022197643","doi":"10.1001/archinte.163.7.797","title":"Antibiotic Therapy for Ambulatory Patients With Community-Acquired Pneumonia in an Emergency Department Setting","year":2003,"lang":"en","type":"article","venue":"Archives of Internal Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Levofloxacin; Medicine; Emergency department; Community-acquired pneumonia; Azithromycin; Pneumonia; Ambulatory; Ambulatory care; Emergency medicine; Medical prescription; Population; Clarithromycin; Observational study; Internal medicine; Intensive care medicine; Antibiotics; Health care","score_opus":0.018506917244113782,"score_gpt":0.2996056045913788,"score_spread":0.281098687347265,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2022197643","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99654007,0.00012809859,0.0004598398,0.00019840477,0.00021308045,0.00063773745,0.000010464787,0.00002154719,0.0017907762],"genre_scores_gemma":[0.99896926,0.000057511406,0.00033159432,0.00045439322,0.000054387332,0.000019495743,0.000034688495,0.000025067977,0.00005359975],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99879223,0.00020782671,0.00043453494,0.00016151209,0.00017956493,0.0002243412],"domain_scores_gemma":[0.99914354,0.00017441052,0.00016416499,0.0003043161,0.00007273469,0.00014081932],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002187694,0.00016594939,0.00035116717,0.00024370514,0.00009610382,0.0000022398865,0.0001159974,0.00003332653,0.00003412882],"category_scores_gemma":[0.00012744279,0.00010913724,0.0000643303,0.00011720278,0.00020268964,0.0000634919,0.000015515929,0.00019331014,9.546977e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046902127,0.0009119954,0.8941879,0.000115468065,0.00009152418,0.0000069578773,0.0017472111,0.000008609158,0.09575083,0.000099032884,0.000016089141,0.006595307],"study_design_scores_gemma":[0.0056446022,0.0075291004,0.97930056,0.0008483737,0.000044778815,0.000016484382,0.00048303723,0.000072072544,0.004603061,0.00022199955,0.0011218081,0.00011414984],"about_ca_topic_score_codex":0.00006666829,"about_ca_topic_score_gemma":0.00008626547,"teacher_disagreement_score":0.091147766,"about_ca_system_score_codex":0.000022343313,"about_ca_system_score_gemma":0.0000451404,"threshold_uncertainty_score":0.44504875},"labels":[],"label_agreement":null},{"id":"W2022225262","doi":"10.1586/ecp.12.20","title":"Are proton pump inhibitors associated with the development of community-acquired pneumonia? A meta-analysis","year":2012,"lang":"en","type":"review","venue":"Expert Review of Clinical Pharmacology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":142,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Meta-analysis; Internal medicine; Esomeprazole; Community-acquired pneumonia; Lansoprazole; Proton-pump inhibitor; Pneumonia; Pantoprazole; Cohort study; MEDLINE; Odds ratio; Omeprazole; Incidence (geometry)","score_opus":0.3999750204036263,"score_gpt":0.5427896278345071,"score_spread":0.1428146074308808,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2022225262","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00020843085,0.99208766,0.000011632945,0.001741735,0.0005578643,0.00507912,0.000040917803,0.0000417226,0.00023091577],"genre_scores_gemma":[0.00033404148,0.9894188,0.000055306526,0.0062579545,0.00043259579,0.0031634658,0.00012556181,0.000062318024,0.00014998108],"study_design_codex":"meta_analysis","study_design_gemma":"not_applicable","domain_scores_codex":[0.9854675,0.008295867,0.0048450674,0.00037077576,0.00059251615,0.0004282508],"domain_scores_gemma":[0.9873603,0.0035823614,0.0071602566,0.00096358405,0.00061927363,0.00031423176],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0076146116,0.00068124826,0.014228393,0.0002981764,0.00024411366,0.000005186218,0.0006202153,0.0005928409,0.0010332422],"category_scores_gemma":[0.0010978525,0.0003145932,0.0067762164,0.0016862489,0.0007315204,0.00005588839,0.00026291749,0.0016326219,0.000030064453],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000057130004,0.0054033175,0.00043965215,0.13195872,0.6122277,0.000022626475,0.00043286025,3.2389863e-7,0.000044047563,0.0000022308013,0.006836268,0.24257512],"study_design_scores_gemma":[0.00030852522,0.00020395301,0.0002176472,0.0067784875,0.33650282,0.000011543972,0.000020815316,1.9797992e-7,0.000024011302,2.0592805e-7,0.6557441,0.00018772986],"about_ca_topic_score_codex":0.0000072155262,"about_ca_topic_score_gemma":0.00002443741,"teacher_disagreement_score":0.6489078,"about_ca_system_score_codex":0.00011169534,"about_ca_system_score_gemma":0.0010103512,"threshold_uncertainty_score":0.9999306},"labels":[],"label_agreement":null},{"id":"W2023014533","doi":"10.1097/shk.0b013e318188c273","title":"CHARACTERIZATION OF S. PNEUMONIAE PNEUMONIA-INDUCED MULTIPLE ORGAN DYSFUNCTION SYNDROME","year":2009,"lang":"en","type":"article","venue":"Shock","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Pneumonia; Multiple organ dysfunction syndrome; Medicine; Organ dysfunction; Intensive care medicine; Immunology; Internal medicine; Sepsis","score_opus":0.014028998909582074,"score_gpt":0.24552861513095448,"score_spread":0.2314996162213724,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2023014533","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99614877,0.0000071072513,0.0003390558,0.0016032276,0.00038092956,0.0003591464,0.0000108056465,0.00016190058,0.0009890596],"genre_scores_gemma":[0.9986106,0.000015928632,0.00002356231,0.00063990266,0.000111278336,0.0000066963266,0.000059903017,0.00002077191,0.00051135465],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989469,0.00003534779,0.0003354669,0.00023821011,0.0002237812,0.00022027055],"domain_scores_gemma":[0.99925095,0.000020371075,0.00013659375,0.00032195318,0.00013703397,0.0001331136],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008606773,0.00016079197,0.00030870372,0.00020427821,0.000105325016,0.000012164025,0.00006217958,0.00014873847,0.000081268176],"category_scores_gemma":[0.0000761047,0.00014208857,0.000111492205,0.0004105759,0.000026791402,0.00013710266,0.000013627955,0.00018941614,0.000098002],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025479127,0.00019798167,0.024970382,0.000029644067,0.000027705273,0.000030687967,0.0000932346,0.0000023800224,0.9697047,0.000036444548,0.000012638783,0.004868722],"study_design_scores_gemma":[0.00091996975,0.0011555302,0.85769594,0.00008406085,0.00008432177,0.00043458032,0.000030315896,0.00023494543,0.13675447,0.00004324728,0.0024083285,0.00015426695],"about_ca_topic_score_codex":0.00001009256,"about_ca_topic_score_gemma":0.0000060240745,"teacher_disagreement_score":0.83295023,"about_ca_system_score_codex":0.00007279033,"about_ca_system_score_gemma":0.000089059795,"threshold_uncertainty_score":0.5794204},"labels":[],"label_agreement":null},{"id":"W2023230857","doi":"10.1093/pch/7.9.622","title":"Meningococcal and pneumococcal disease","year":2002,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Medicine; Vaccination; Streptococcus pneumoniae; Diphtheria; Tetanus; Meningococcal disease; Meningitis; Conjugate vaccine; Meningococcal vaccine; Immunization; Immunology; Neisseria meningitidis; Pneumococcal conjugate vaccine; Pediatrics; Virology; Microbiology; Antibiotics; Immune system; Biology","score_opus":0.018779498448525535,"score_gpt":0.27272353764530455,"score_spread":0.253944039196779,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2023230857","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8556723,0.013084888,0.00020903884,0.11597919,0.00068871933,0.0012015515,0.000057564892,0.00040820515,0.01269852],"genre_scores_gemma":[0.9869971,0.0037992182,0.00006784957,0.007851551,0.0009584458,0.000024873207,0.000011182432,0.000025141464,0.0002646293],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987794,0.000058350506,0.0002784394,0.0002873815,0.00020875914,0.00038764463],"domain_scores_gemma":[0.9985757,0.000059690552,0.000080527556,0.0002321785,0.000035182653,0.0010167182],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017801352,0.0001493351,0.00025786008,0.00018159278,0.00038766328,0.00001952463,0.000043934502,0.000068626396,0.00012507664],"category_scores_gemma":[0.00011039847,0.00012643608,0.0000863401,0.00028501914,0.00006266678,0.000056410285,0.0000382455,0.00037638983,0.00011603773],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003793873,0.00081537606,0.95988286,0.00051325693,0.00004574134,0.00010533586,0.0007620741,0.000008578731,0.00020088494,0.0017862215,0.010793594,0.025048165],"study_design_scores_gemma":[0.001249095,0.00036478252,0.8065619,0.000045682453,0.00007571329,0.0001459717,0.000028046983,0.00063700153,0.0000032666123,0.000093800736,0.1906173,0.00017744766],"about_ca_topic_score_codex":0.0000130457365,"about_ca_topic_score_gemma":0.000004293567,"teacher_disagreement_score":0.1798237,"about_ca_system_score_codex":0.00007944002,"about_ca_system_score_gemma":0.00009983429,"threshold_uncertainty_score":0.5155914},"labels":[],"label_agreement":null},{"id":"W2023284829","doi":"10.1016/s0732-8893(02)00498-4","title":"Molecular characterization of fluoroquinolone resistant Streptococcus pneumoniae clinical isolates obtained from across Canada","year":2003,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Health Sciences Centre","funders":"Manitoba Medical Service Foundation","keywords":"Ciprofloxacin; Gatifloxacin; Moxifloxacin; Levofloxacin; Efflux; Microbiology; Streptococcus pneumoniae; Quinolone; Antibacterial agent; Sparfloxacin; Ofloxacin; Biology; Gemifloxacin; Antibiotics; Genetics","score_opus":0.0074980829182071575,"score_gpt":0.25883144952008247,"score_spread":0.25133336660187533,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2023284829","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99736595,0.00045045855,0.00010256991,0.00032754656,0.00042086988,0.00045344894,0.000753947,0.00004436192,0.00008082845],"genre_scores_gemma":[0.9975439,0.00029559026,0.0000037219434,0.0016506289,0.00004857808,0.000038737224,0.00038361456,0.000017517475,0.000017762603],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99856144,0.00024987225,0.00049335085,0.00036546547,0.00004340732,0.00028647785],"domain_scores_gemma":[0.99861634,0.00044640072,0.00018171014,0.00028467903,0.00017893736,0.0002919456],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013094148,0.0001969253,0.00041591527,0.00003668948,0.00015657,0.000010563816,0.00004592828,0.0001753149,0.00007906952],"category_scores_gemma":[0.0022006696,0.00017453305,0.00010673396,0.00013442217,0.000268513,0.000040107374,0.000031758053,0.00021290885,0.0000059294334],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047567653,0.00023971521,0.5018427,0.000036318797,0.00012021591,0.00009579712,0.00002558742,0.0000027157753,0.49714783,0.0000856883,0.000056315406,0.00029956063],"study_design_scores_gemma":[0.0017989933,0.00047443385,0.9629132,0.000115517025,0.00030593007,0.000035833196,0.00003766661,0.000011704563,0.024253808,0.00010229915,0.009714124,0.00023649329],"about_ca_topic_score_codex":0.00411625,"about_ca_topic_score_gemma":0.008559484,"teacher_disagreement_score":0.472894,"about_ca_system_score_codex":0.00005372989,"about_ca_system_score_gemma":0.0004898919,"threshold_uncertainty_score":0.7117252},"labels":[],"label_agreement":null},{"id":"W2024496497","doi":"10.1086/318124","title":"Community‐Acquired Pneumonia in the Elderly","year":2000,"lang":"en","type":"review","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":376,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Pneumonia; Delirium; Community-acquired pneumonia; Streptococcus pneumoniae; Aspiration pneumonia; Intensive care medicine; Population; Geriatrics; Pediatrics; Internal medicine; Antibiotics; Psychiatry","score_opus":0.13407292606998394,"score_gpt":0.4535618585279804,"score_spread":0.3194889324579965,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024496497","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.003559983,0.984456,0.0000015492502,0.00027180312,0.00071878056,0.0017600489,0.00010708623,0.00029911354,0.008825621],"genre_scores_gemma":[0.0036464534,0.99231726,3.797691e-7,0.0020456566,0.00086914614,0.00046335455,0.00020268315,0.00007944006,0.00037561147],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99350816,0.0036015022,0.0016677304,0.00045647498,0.00030551798,0.00046063823],"domain_scores_gemma":[0.99476326,0.0029729675,0.00036856096,0.0014654048,0.00006685374,0.00036292992],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00088458677,0.0005663477,0.0025864893,0.00034546267,0.00045444444,0.00009611006,0.00047361472,0.0006996599,0.00028698746],"category_scores_gemma":[0.0010772039,0.00034171238,0.0020707669,0.00093098707,0.0005443567,0.000078952435,0.00008800372,0.0022035367,0.00080779893],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000007211101,0.003368865,0.008093192,0.004145251,0.00028386846,0.00022056841,0.000036671372,7.6225393e-7,7.6438845e-8,0.000034537352,0.0024818683,0.9813271],"study_design_scores_gemma":[0.00072820124,0.001551058,0.015373402,0.005803607,0.003041391,0.00020623444,0.000028946197,0.0000010389397,6.5494956e-9,0.00018854876,0.97274023,0.00033732463],"about_ca_topic_score_codex":0.000048866594,"about_ca_topic_score_gemma":0.00009715349,"teacher_disagreement_score":0.9809898,"about_ca_system_score_codex":0.00013042279,"about_ca_system_score_gemma":0.00080116047,"threshold_uncertainty_score":0.9999702},"labels":[],"label_agreement":null},{"id":"W2024807558","doi":"10.1128/jcm.01238-10","title":"The International Circumpolar Surveillance Interlaboratory Quality Control Program for <i>Streptococcus pneumoniae</i> , 1999 to 2008","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Institut National de Santé Publique du Québec","funders":"Centers for Disease Control and Prevention","keywords":"Concordance; Broth microdilution; Medicine; Etest; Streptococcus pneumoniae; Microbiology; Internal medicine; Biology; Antibiotics; Minimum inhibitory concentration","score_opus":0.030171990326468192,"score_gpt":0.4208287142325578,"score_spread":0.39065672390608963,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024807558","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96216905,0.00012602474,0.00042355654,0.026949182,0.009210463,0.0008212057,0.0001287529,0.000030219551,0.0001415719],"genre_scores_gemma":[0.99095863,0.00006758116,0.00030350965,0.0063670636,0.00212734,0.00004960929,0.000007690242,0.00001667382,0.00010189303],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99742407,0.00028191568,0.0017078714,0.00021431013,0.00008703093,0.00028479166],"domain_scores_gemma":[0.9950305,0.0024221023,0.00084148813,0.00029557332,0.0011321813,0.0002781042],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0036328237,0.00014495944,0.00066033483,0.00007920049,0.00013712625,0.00003658501,0.00037701512,0.00028929464,0.000031599735],"category_scores_gemma":[0.006034038,0.000086345,0.0005260781,0.0001098994,0.00034068717,0.000049469723,0.0000433258,0.0010933211,0.000027665325],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00051468925,0.00044734008,0.33034086,0.000009448192,0.00029505225,0.000009966527,0.000016797785,0.0000012462023,0.6348897,0.00008086205,0.0144241825,0.018969815],"study_design_scores_gemma":[0.0027595342,0.0017660158,0.15299232,0.000021381871,0.00004154371,0.00029009007,0.000025377789,0.0000062253016,0.00068664475,0.00005251485,0.8412663,0.000092080154],"about_ca_topic_score_codex":0.0000026636042,"about_ca_topic_score_gemma":0.00012852035,"teacher_disagreement_score":0.82684207,"about_ca_system_score_codex":0.000031702766,"about_ca_system_score_gemma":0.00046787295,"threshold_uncertainty_score":0.7223743},"labels":[],"label_agreement":null},{"id":"W2025268611","doi":"10.1016/j.vaccine.2014.02.002","title":"Sequential administration of 13-valent pneumococcal conjugate vaccine and 23-valent pneumococcal polysaccharide vaccine in pneumococcal vaccine–naïve adults 60–64 years of age","year":2014,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":162,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"inVentiv Health Clinical","funders":"National Institute on Aging","keywords":"Pneumococcal conjugate vaccine; Pneumococcal polysaccharide vaccine; Medicine; Streptococcus pneumoniae; Pneumococcal vaccine; Vaccination; Immunology; Microbiology; Pneumococcal disease; Biology; Antibiotics","score_opus":0.011673924099780611,"score_gpt":0.26769748312305697,"score_spread":0.25602355902327634,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2025268611","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944601,0.00036440467,0.00013356438,0.0018682585,0.00069774647,0.0018369835,0.00010633822,0.00016921082,0.00036336662],"genre_scores_gemma":[0.99775755,0.0005382173,0.00011588503,0.000275988,0.0006461849,0.00013000099,0.00016839892,0.00012909678,0.00023867546],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9942121,0.00036481072,0.0025104233,0.0011919257,0.0007360665,0.0009846949],"domain_scores_gemma":[0.9964898,0.00035566793,0.0009056352,0.0011298904,0.0004233101,0.00069566234],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009957694,0.00082176685,0.0020182964,0.0010784244,0.00014466891,0.000044981425,0.000389492,0.0005686817,0.00024953447],"category_scores_gemma":[0.0005358479,0.0007737555,0.00046553666,0.0010254583,0.00005526435,0.00034038475,0.00028477467,0.00096911466,0.000055462453],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003214657,0.0015089719,0.18779156,0.00088782655,0.00026177065,0.00040454822,0.00044008196,0.0001277111,0.80103743,0.0002780842,0.0002153251,0.0038320324],"study_design_scores_gemma":[0.0148414355,0.0041213636,0.9199991,0.0008410957,0.0005130229,0.00063358905,0.00015227175,0.0014018486,0.05438228,0.00014716512,0.0022899853,0.0006768167],"about_ca_topic_score_codex":0.00037470332,"about_ca_topic_score_gemma":0.0012447396,"teacher_disagreement_score":0.74665517,"about_ca_system_score_codex":0.00019494095,"about_ca_system_score_gemma":0.0003310164,"threshold_uncertainty_score":0.99947137},"labels":[],"label_agreement":null},{"id":"W2025463564","doi":"10.1101/gr.089342.108","title":"Genome sequencing of linezolid-resistant <i>Streptococcus pneumoniae</i> mutants reveals novel mechanisms of resistance","year":2009,"lang":"en","type":"article","venue":"Genome Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University and Génome Québec Innovation Centre; Centre de Géomatique du Québec; Université Laval","funders":"Great Lakes Protection Fund; National Institute of Allergy and Infectious Diseases; Institute of Infection and Immunity; Canadian Institutes of Health Research; National Institutes of Health; McGill University","keywords":"23S ribosomal RNA; Biology; Linezolid; Genetics; Streptococcus pneumoniae; Gene; Mutant; Mutation; Genome; Microbiology; Antibiotics; Staphylococcus aureus; Bacteria; RNA","score_opus":0.07823564074069059,"score_gpt":0.3629176170293566,"score_spread":0.284681976288666,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2025463564","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.980681,0.00093470915,0.0014820762,0.001925435,0.0000867763,0.0015691934,0.00025848584,0.00008307691,0.01297926],"genre_scores_gemma":[0.99622256,0.00019075586,0.000661562,0.00020322317,0.00013986883,0.000042162395,0.000016692735,0.000038106064,0.0024850543],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.996263,0.00018287425,0.0009200473,0.0005331993,0.0012579581,0.0008428808],"domain_scores_gemma":[0.9968599,0.00019068303,0.00025866722,0.00097184157,0.0013588829,0.0003600121],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001952408,0.0002462512,0.000734674,0.0007092415,0.00024285715,0.000020977473,0.0003722951,0.00021806802,0.0001358726],"category_scores_gemma":[0.00050401676,0.00021711968,0.00022661421,0.0015201764,0.00029102596,0.000093064744,0.00010515578,0.00066400826,0.000038860173],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001528486,0.00030590637,0.00029159492,0.00037336952,0.000075752956,0.000094215706,0.00030791515,0.000040199346,0.9964491,0.0017027886,0.00002499243,0.00018127834],"study_design_scores_gemma":[0.004460389,0.005089753,0.22674926,0.0014750329,0.00021381387,0.00017240706,0.0018639999,0.000059236292,0.7321663,0.01158103,0.015304389,0.0008643761],"about_ca_topic_score_codex":0.000026095138,"about_ca_topic_score_gemma":0.000023938792,"teacher_disagreement_score":0.26428282,"about_ca_system_score_codex":0.000412991,"about_ca_system_score_gemma":0.0007951844,"threshold_uncertainty_score":0.8853884},"labels":[],"label_agreement":null},{"id":"W2025487410","doi":"10.4212/cjhp.v63i4.932","title":"Audit of Physicians’ Adherence to a Preprinted Order Set for Community-Acquired Pneumonia","year":2010,"lang":"en","type":"article","venue":"The Canadian Journal of Hospital Pharmacy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"University of Northern British Columbia","funders":"","keywords":"Medicine; Community-acquired pneumonia; Pneumonia; Observational study; Guideline; Pediatrics; Emergency medicine; Family medicine; Internal medicine","score_opus":0.039486194901920534,"score_gpt":0.3378467381700361,"score_spread":0.29836054326811556,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2025487410","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98569036,0.00002344948,0.00008282604,0.012007523,0.0011359276,0.0004942403,0.00006374916,0.000007921204,0.0004939867],"genre_scores_gemma":[0.9976153,0.0000034466213,0.00013293202,0.0017410544,0.0002839604,0.000016098993,0.0000029389857,0.000019936882,0.00018436713],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991066,0.00007290859,0.00034760794,0.00007453696,0.00014439692,0.0002539435],"domain_scores_gemma":[0.99817175,0.00011139681,0.0002502128,0.00031313216,0.0007427351,0.0004107953],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043761852,0.00012162959,0.0002689098,0.00015904767,0.00034436755,0.0000273247,0.0003543866,0.000037334525,0.00013753347],"category_scores_gemma":[0.00041922176,0.000087554494,0.00016623837,0.0002875041,0.00020383898,0.00010450801,0.000022180553,0.0005933862,0.000017238768],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022191745,0.0003842195,0.044221316,0.0001293399,0.0005272584,0.00007501557,0.010488222,0.00013358101,0.91487116,0.00026113962,0.015906854,0.012779986],"study_design_scores_gemma":[0.009900055,0.011716279,0.27745843,0.00093394873,0.001199705,0.0010569266,0.0034880235,0.0004577527,0.14837447,0.0018061618,0.5427035,0.0009047213],"about_ca_topic_score_codex":0.005715408,"about_ca_topic_score_gemma":0.023893775,"teacher_disagreement_score":0.76649666,"about_ca_system_score_codex":0.00006525486,"about_ca_system_score_gemma":0.0012495294,"threshold_uncertainty_score":0.99391764},"labels":[],"label_agreement":null},{"id":"W2025742951","doi":"10.1179/joc.2007.19.4.392","title":"Antipneumococcal Activity of Ertapenem Compared with Gatifloxacin in a Temperature-Sensitive Murine Model of Acute Pneumonia","year":2007,"lang":"en","type":"article","venue":"Journal of Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital","funders":"","keywords":"Gatifloxacin; Ertapenem; Streptococcus pneumoniae; Microbiology; Pneumonia; Medicine; Pneumolysin; Antibiotics; Internal medicine; Biology; Levofloxacin; Antibiotic resistance; Meropenem","score_opus":0.012728562962916192,"score_gpt":0.2852792858877311,"score_spread":0.2725507229248149,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2025742951","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974755,0.000023299877,0.00081619364,0.0009861033,0.000053352676,0.00021355669,0.00000894193,0.000007343327,0.0004157129],"genre_scores_gemma":[0.99863845,0.000095667565,0.00077593094,0.00033120177,0.000075162796,8.953166e-7,9.355637e-7,0.00002396245,0.000057791567],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99864966,0.000040394847,0.00060742156,0.00012718183,0.00036617884,0.00020915487],"domain_scores_gemma":[0.99860233,0.00008264201,0.0005921247,0.00018522733,0.0004038175,0.00013388022],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041536693,0.00017859838,0.0007819135,0.00037512873,0.000026585267,0.000005270517,0.00008197425,0.00012123853,0.000011423362],"category_scores_gemma":[0.000016609561,0.00012283966,0.00018702477,0.00038906763,0.00013716539,0.00010430904,0.000009145928,0.00044933803,4.416252e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0031904506,0.0006960975,0.02459537,0.000057406047,0.00045310243,0.00014147312,0.00062338845,0.0006517078,0.96869016,0.000013089292,0.00002513543,0.00086259504],"study_design_scores_gemma":[0.0049217436,0.0011408108,0.21665347,0.0003368197,0.0001138944,0.00054517604,0.00007845079,0.0011450436,0.7748822,0.000034451645,0.000040659685,0.00010731039],"about_ca_topic_score_codex":0.000009563564,"about_ca_topic_score_gemma":0.000032891217,"teacher_disagreement_score":0.19380802,"about_ca_system_score_codex":0.00007995066,"about_ca_system_score_gemma":0.00026252054,"threshold_uncertainty_score":0.5009256},"labels":[],"label_agreement":null},{"id":"W2025797635","doi":"10.1016/j.ijantimicag.2005.04.012","title":"Comparison of gatifloxacin and levofloxacin administered at various dosing regimens to hospitalised patients with community-acquired pneumonia: pharmacodynamic target attainment study using North American surveillance data for Streptococcus pneumoniae","year":2005,"lang":"en","type":"article","venue":"International Journal of Antimicrobial Agents","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Manitoba","funders":"","keywords":"Gatifloxacin; Levofloxacin; Medicine; Dosing; Streptococcus pneumoniae; Pharmacokinetics; Pharmacodynamics; Community-acquired pneumonia; Area under the curve; Pneumonia; Pharmacology; Population; Internal medicine; Antibiotics; Chemistry","score_opus":0.04899618796521661,"score_gpt":0.3767174278578662,"score_spread":0.3277212398926496,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2025797635","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964376,0.0000081271855,0.0006124037,0.00070469896,0.00035684014,0.0010782959,0.0007817593,0.000013005946,0.0000072533744],"genre_scores_gemma":[0.9980332,0.000007190493,0.0011019226,0.00043196292,0.00014293905,0.000005673714,0.00022623732,0.000036044068,0.0000147966],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99780995,0.00019620317,0.0009250148,0.00027061938,0.000546002,0.00025220335],"domain_scores_gemma":[0.99748474,0.000101058664,0.0010757447,0.00038092516,0.000745906,0.00021159496],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003309978,0.0002556612,0.00067520957,0.00030998437,0.00023072182,0.000053828604,0.00048456757,0.00003475402,0.000008858704],"category_scores_gemma":[0.00006607075,0.00021618951,0.00009434998,0.00021087118,0.00014266232,0.00024053187,0.0003282019,0.00023004944,0.0000013552448],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010807866,0.0031610066,0.8917344,0.000038179034,0.00079655997,0.000025944508,0.0014710206,0.0021340055,0.09803251,1.5485003e-7,0.00022428544,0.0013011473],"study_design_scores_gemma":[0.007312286,0.0029639476,0.98157316,0.00024168327,0.00026815513,0.000061686034,0.00038182046,0.0029713348,0.0028721774,3.3640524e-7,0.0011054872,0.00024790206],"about_ca_topic_score_codex":0.00007614643,"about_ca_topic_score_gemma":0.0004972923,"teacher_disagreement_score":0.095160335,"about_ca_system_score_codex":0.00039337066,"about_ca_system_score_gemma":0.00013224116,"threshold_uncertainty_score":0.88159525},"labels":[],"label_agreement":null},{"id":"W2026264999","doi":"10.1067/mob.2003.175","title":"The effects of community-acquired pneumonia during pregnancy ending with a live birth","year":2003,"lang":"en","type":"article","venue":"American Journal of Obstetrics and Gynecology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Capital District Health Authority; Alberta Health","funders":"","keywords":"Medicine; Pneumonia; Incidence (geometry); Pregnancy; Community-acquired pneumonia; Obstetrics; Population; Relative risk; Pediatrics; Gestation; Gestational age; Community hospital; Live birth; Internal medicine; Environmental health; Confidence interval","score_opus":0.00819240065151564,"score_gpt":0.24259218387518708,"score_spread":0.23439978322367144,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2026264999","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968626,0.0020560357,0.00004042541,0.00016720484,0.00043964013,0.00013549601,8.3761233e-7,0.0000057288107,0.000292043],"genre_scores_gemma":[0.99787104,0.0018391882,0.00009615557,0.000093871575,0.000012607301,0.000004901114,1.2514009e-7,0.000013151401,0.000068973386],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99890184,0.00036364037,0.00032241532,0.000062014115,0.00013772302,0.00021234485],"domain_scores_gemma":[0.9920996,0.0068274434,0.00055848557,0.0001755692,0.00020390222,0.00013503572],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018176337,0.00011114364,0.0004123415,0.00023034518,0.00034710902,0.000011904774,0.000086904816,0.000038796286,0.000004191511],"category_scores_gemma":[0.004867629,0.000064957116,0.00007553749,0.00052466226,0.00048913003,0.0000471839,0.000023865576,0.00035126903,5.6571986e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013789238,0.0008438726,0.7680527,0.0005583211,0.0010238385,0.0012795752,0.005404037,0.00002527677,0.11427582,0.00085562206,0.000015116163,0.10752796],"study_design_scores_gemma":[0.0051304814,0.024448235,0.9387989,0.00068147207,0.0004641447,0.005013802,0.008794804,0.0000070061933,0.006570039,0.00012690864,0.009723412,0.0002408193],"about_ca_topic_score_codex":0.000008056331,"about_ca_topic_score_gemma":0.000005858163,"teacher_disagreement_score":0.1707462,"about_ca_system_score_codex":0.000062286876,"about_ca_system_score_gemma":0.00013394668,"threshold_uncertainty_score":0.58273584},"labels":[],"label_agreement":null},{"id":"W20266917","doi":"10.1097/01.mop.0000192520.48411.fa","title":"Advances in understanding the genetic basis for bone-marrow failure","year":2006,"lang":"en","type":"review","venue":"Current Opinion in Pediatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":129,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Coronavirus; Respiratory tract infections; Medicine; Disease; Respiratory tract; Etiology; Transmission (telecommunications); Coronaviridae; Betacoronavirus; Virology; Coronavirus disease 2019 (COVID-19); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Respiratory system; Respiratory disease; Immunology; Pathology; Internal medicine; Infectious disease (medical specialty); Lung","score_opus":0.11793374184787649,"score_gpt":0.4019334393467438,"score_spread":0.28399969749886733,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W20266917","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000025460656,0.9892147,0.0025427458,0.0001771383,0.0060305945,0.0017834993,0.00009539425,0.000032977372,0.00012040442],"genre_scores_gemma":[0.00003913109,0.99662,0.000042007752,0.000012792959,0.002516319,0.0005492121,0.00015790116,0.000046122266,0.000016512],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99799246,0.00012485909,0.0008378962,0.00040334323,0.00026215945,0.00037928252],"domain_scores_gemma":[0.9986003,0.0006207524,0.00033937168,0.00031431016,0.00004546614,0.00007977632],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030406693,0.00035177995,0.00095256395,0.00079595094,0.00012042545,0.000031293093,0.0001588205,0.0002963489,0.000009345048],"category_scores_gemma":[0.0002423359,0.000236848,0.0004393542,0.0012742338,0.00006143807,0.0000765906,0.000045608533,0.00073173625,0.000011612015],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008864469,0.00036690984,0.009795898,0.10698625,0.000017814431,0.0000059839654,0.000097025324,0.00010657487,9.566079e-8,0.0009336882,0.014763582,0.8669173],"study_design_scores_gemma":[0.00043329524,0.000062639345,0.00012432803,0.0063437526,0.00028495907,0.000029549386,0.000051010727,0.000023656026,8.491472e-9,0.00031427096,0.9920884,0.0002441515],"about_ca_topic_score_codex":0.000002412795,"about_ca_topic_score_gemma":0.000025555164,"teacher_disagreement_score":0.9773248,"about_ca_system_score_codex":0.00063918286,"about_ca_system_score_gemma":0.0005243985,"threshold_uncertainty_score":0.96583813},"labels":[],"label_agreement":null},{"id":"W2026752478","doi":"10.3201/eid1401.061522","title":"Invasive Bacterial Diseases in Northern Canada","year":2008,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; Institute for Clinical Evaluative Sciences; Provincial Laboratory of Public Health; Hospital for Sick Children","funders":"","keywords":"Streptococcus pneumoniae; Haemophilus influenzae; Epidemiology; Incidence (geometry); Population; Circumpolar star; Serotype; Conjugate vaccine; Medicine; Demography; Geography; Biology; Environmental health; Microbiology; Virology; Internal medicine; Antibiotics","score_opus":0.008321609957945777,"score_gpt":0.22705826656363695,"score_spread":0.21873665660569117,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2026752478","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963351,0.00024776353,0.0000050755957,0.0004622412,0.00083565083,0.0002733911,0.00007287531,0.00018168993,0.0015862258],"genre_scores_gemma":[0.9981742,0.00011735858,9.390988e-7,0.0008662453,0.00048055075,0.00007447645,0.00006930285,0.0000315559,0.00018539735],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987896,0.000060617625,0.00026987758,0.00028272512,0.00025819524,0.0003389758],"domain_scores_gemma":[0.999135,0.00009752455,0.00007214495,0.00025569552,0.000095989824,0.00034362593],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00001941705,0.00020401634,0.00030799996,0.00019127919,0.00028744777,0.000012491996,0.000060391118,0.000049684353,0.0002674592],"category_scores_gemma":[0.0003564345,0.00018797931,0.00012733882,0.00037323116,0.000095310854,0.00010909115,0.000035030345,0.0001535238,0.00003361077],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030343364,0.00036702838,0.9944991,0.00005450703,0.000062268606,0.0007682963,0.000085105705,0.0002390151,0.0010499861,0.000009863094,0.0025289385,0.00030557503],"study_design_scores_gemma":[0.001329211,0.00012092177,0.9824993,0.0000726837,0.000103775645,0.00017673265,0.00005749662,0.0000138845335,0.0001207499,0.000027865502,0.015256741,0.00022064803],"about_ca_topic_score_codex":0.09516016,"about_ca_topic_score_gemma":0.7206524,"teacher_disagreement_score":0.6254922,"about_ca_system_score_codex":0.00038414702,"about_ca_system_score_gemma":0.0021751267,"threshold_uncertainty_score":0.91086525},"labels":[],"label_agreement":null},{"id":"W2028257405","doi":"10.1016/j.ccc.2013.03.009","title":"Severe Community-Acquired Pneumonia","year":2013,"lang":"en","type":"review","venue":"Critical Care Clinics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":107,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; University of Alberta","funders":"","keywords":"Medicine; Intensive care medicine; Pneumonia; Intensive care unit; Epidemiology; Community-acquired pneumonia; Intensive care; Internal medicine","score_opus":0.1779212219569748,"score_gpt":0.4690926049159537,"score_spread":0.29117138295897893,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2028257405","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000075487755,0.98728186,0.000010835462,0.00030308514,0.00157357,0.00096986105,0.0001772868,0.00024938345,0.009358653],"genre_scores_gemma":[0.00033008485,0.9957518,0.00009078628,0.0016285693,0.00075671164,0.00024315501,0.0003452152,0.0001340384,0.00071962987],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9968411,0.0008332771,0.0010959927,0.00040670764,0.00030585207,0.00051707635],"domain_scores_gemma":[0.9949406,0.002391432,0.00013497207,0.0013308513,0.0006018523,0.00060032256],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00029725482,0.0005545906,0.0024653098,0.00017864504,0.00047684045,0.00008186862,0.00033821547,0.0011974248,0.0004231892],"category_scores_gemma":[0.0028525842,0.00042635843,0.0012846505,0.00033228882,0.00052186806,0.000079151265,0.00024012766,0.0023463075,0.00215612],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000028759898,0.00029499116,0.00005468912,0.06934348,0.0001430389,0.00014096721,0.00013095843,5.4612933e-8,0.0000018688432,0.0004876688,0.0015865616,0.9278129],"study_design_scores_gemma":[0.0002355696,0.00052446924,0.000027720556,0.010086524,0.0028631254,0.00064410333,0.00041233934,0.0000016151499,1.9426696e-7,0.0000977979,0.98465854,0.0004480145],"about_ca_topic_score_codex":0.000009774179,"about_ca_topic_score_gemma":0.0000051085026,"teacher_disagreement_score":0.983072,"about_ca_system_score_codex":0.00022891627,"about_ca_system_score_gemma":0.0008192005,"threshold_uncertainty_score":0.9999553},"labels":[],"label_agreement":null},{"id":"W2028287696","doi":"10.3402/ijch.v63i0.17905","title":"Invasive pneumococcal disease in Greenland","year":2004,"lang":"en","type":"article","venue":"International Journal of Circumpolar Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Incidence (geometry); Serotype; Pneumococcal disease; Streptococcus pneumoniae; Medicine; Meningitis; Pediatrics; Disease; Pneumococcal infections; Retrospective cohort study; Mortality rate; Internal medicine; Immunology; Antibiotics; Biology; Microbiology","score_opus":0.018995771380019403,"score_gpt":0.33214710104868955,"score_spread":0.31315132966867015,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2028287696","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9614566,0.00046854187,0.0005239098,0.036400598,0.0008199666,0.00012755729,0.0000122202855,0.0000091425445,0.00018145201],"genre_scores_gemma":[0.9940874,0.00041857385,0.00005842083,0.0048916647,0.0005136445,0.0000019488396,0.0000049885066,0.0000097584125,0.000013579669],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99872553,0.00005187793,0.0005196179,0.00009544255,0.000447311,0.0001601994],"domain_scores_gemma":[0.998906,0.000045368943,0.00026522667,0.000088666435,0.0002792908,0.00041545232],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003111093,0.00008494845,0.00022305056,0.0004386943,0.00003741248,0.000017666782,0.00013419008,0.000040564668,0.000034277487],"category_scores_gemma":[0.00034463432,0.00007085731,0.00013358615,0.00012328356,0.00004137812,0.00016436388,0.000017319244,0.00036896148,0.00001956324],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029332397,0.0008430537,0.97456443,0.00006303244,0.00012097295,0.0023897116,0.00073650054,0.00095615856,0.015471322,0.0015428738,0.0001202642,0.0028983597],"study_design_scores_gemma":[0.0031071384,0.00035712807,0.9847015,0.0005677322,0.000015508907,0.0012763191,0.00005549162,0.0000065447794,0.00020433599,0.0024024416,0.0072357124,0.000070131704],"about_ca_topic_score_codex":0.00010784987,"about_ca_topic_score_gemma":0.000102267906,"teacher_disagreement_score":0.03263081,"about_ca_system_score_codex":0.0005324021,"about_ca_system_score_gemma":0.0025122724,"threshold_uncertainty_score":0.44566634},"labels":[],"label_agreement":null},{"id":"W2028440405","doi":"10.1016/s1098-3015(10)73886-9","title":"PIH18 A COST EFFECTIVENESS ANALYSIS OF A GENERAL VACCINATION PROGRAMME WITH THE NEW 10- VALENT PNEUMOCOCCAL NON- TYPEABLE HAEMOPHILUS INFLUENZAE PROTEIN-D CONJUGATE VACCINE (PHID-CV) IN SWEDEN","year":2009,"lang":"en","type":"article","venue":"Value in Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Health Economics","funders":"","keywords":"Haemophilus influenzae; Conjugate vaccine; Medicine; Vaccination; Pneumococcal conjugate vaccine; Conjugate; Haemophilus; Pneumococcal disease; Virology; Microbiology; Streptococcus pneumoniae; Immunization; Immunology; Biology; Antibody; Bacteria; Antibiotics; Genetics; Mathematics","score_opus":0.036978897905005,"score_gpt":0.33256284719297496,"score_spread":0.29558394928796994,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2028440405","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98789823,0.00022633946,0.00033123314,0.0071233837,0.000040815983,0.0040454306,0.000007434415,0.000044495762,0.000282628],"genre_scores_gemma":[0.9985409,0.000039901082,0.00015920908,0.0006876902,0.00009490383,0.00023960974,0.000023505985,0.000021239193,0.00019305538],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9975021,0.0005995785,0.00065033993,0.0003901895,0.0003353789,0.00052241335],"domain_scores_gemma":[0.998698,0.00017055104,0.00030373674,0.0004203119,0.00016639713,0.00024100809],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015782347,0.00024186552,0.00079195044,0.000778984,0.00010881957,0.00002232781,0.0001301679,0.0001413483,0.00003218408],"category_scores_gemma":[0.00014753835,0.00015995828,0.00013527236,0.0030367554,0.00002688429,0.00010189469,0.000025029733,0.0004434864,0.000008086838],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0044932524,0.0042581474,0.56208175,0.001982105,0.0013225606,0.00021267276,0.003417765,0.28190503,0.09066335,0.0014700978,0.0003616649,0.04783157],"study_design_scores_gemma":[0.0047415774,0.0028229998,0.97340524,0.00050781464,0.0002553461,0.000029294697,0.000054387612,0.015038601,0.00143082,0.0001480961,0.0013870345,0.00017879694],"about_ca_topic_score_codex":0.0067920857,"about_ca_topic_score_gemma":0.001519653,"teacher_disagreement_score":0.41132346,"about_ca_system_score_codex":0.000611068,"about_ca_system_score_gemma":0.0009601537,"threshold_uncertainty_score":0.9998218},"labels":[],"label_agreement":null},{"id":"W2028649541","doi":"10.1016/j.jval.2011.08.240","title":"PIN54 Cost-Effectiveness of 2+1 Dosing of 13-Valent Pneumococcal Conjugate Vaccine Compared with 2+1 Dosing of 10-Valent Conjugate Vaccine in Preventing Pneumococcal Disease in Canada","year":2011,"lang":"en","type":"article","venue":"Value in Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Pfizer (Canada)","funders":"","keywords":"Pneumococcal conjugate vaccine; Medicine; Pneumococcal disease; Vaccination; Dosing; Streptococcus pneumoniae; Immunization; Population; Environmental health; Immunology; Internal medicine; Antibiotics; Microbiology; Biology; Antigen","score_opus":0.04973701197539053,"score_gpt":0.2954728751303512,"score_spread":0.24573586315496065,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2028649541","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99580985,0.00052467623,0.000043734406,0.00022178158,0.00021858938,0.0029665013,0.00007146409,0.00002139085,0.000122026286],"genre_scores_gemma":[0.999481,0.00013852346,0.000075037606,0.00006962825,0.0000308153,0.00012355979,0.00002578291,0.000049091443,0.0000065634376],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9951254,0.0011027954,0.002016282,0.0005455133,0.0004838162,0.0007261585],"domain_scores_gemma":[0.99745035,0.00048420404,0.0008889594,0.0005136959,0.00022840923,0.00043440604],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0017317082,0.0003791783,0.0015835603,0.0006588474,0.000068236695,0.0000049536466,0.00018484658,0.00009762888,0.000041239306],"category_scores_gemma":[0.00021044874,0.00033389463,0.00012509107,0.0009911762,0.000088613386,0.00013500496,0.00009018099,0.0005226764,0.0000010485454],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0028726808,0.0012189685,0.93205786,0.0059191813,0.00006511062,0.0001332676,0.000716849,0.018989481,0.037614603,0.00006470128,0.0000029854025,0.00034431042],"study_design_scores_gemma":[0.008104742,0.0009311996,0.9611615,0.009583545,0.00007763028,0.000031161155,0.00025780025,0.006132465,0.013380588,0.000047306425,0.00003673539,0.00025530453],"about_ca_topic_score_codex":0.58087575,"about_ca_topic_score_gemma":0.24268198,"teacher_disagreement_score":0.3381938,"about_ca_system_score_codex":0.0012754718,"about_ca_system_score_gemma":0.0036863924,"threshold_uncertainty_score":0.9999113},"labels":[],"label_agreement":null},{"id":"W2029172885","doi":"10.1136/ebm.14.4.109","title":"Review: pneumococcal vaccination is not effective for preventing pneumonia, bacteraemia, bronchitis, or mortality","year":2009,"lang":"en","type":"letter","venue":"Evidence-Based Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Pneumococcal pneumonia; Pneumonia; Vaccination; Streptococcus pneumoniae; Pneumococcal polysaccharide vaccine; Pneumococcal infections; Bronchitis; Pneumococcal vaccine; Intensive care medicine; Immunology; Pediatrics; Internal medicine; Pneumococcal disease; Antibiotics; Microbiology; Biology","score_opus":0.08889921163674493,"score_gpt":0.38842113863576333,"score_spread":0.2995219269990184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029172885","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004689221,0.024144921,0.0007849015,0.9573272,0.0017060109,0.01039809,0.00015480423,0.00035998874,0.000434875],"genre_scores_gemma":[0.005175145,0.01381192,0.00014836539,0.9577507,0.016200682,0.002141258,0.0009518103,0.00017223404,0.0036479302],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9936113,0.00064522715,0.0017818054,0.0015437108,0.0013492695,0.0010687014],"domain_scores_gemma":[0.99283755,0.0030874116,0.0011941467,0.0014364992,0.00103653,0.00040787164],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0020903205,0.0011104133,0.0025691953,0.00064486376,0.00039774991,0.00004600776,0.0004397444,0.0012734573,0.0011975542],"category_scores_gemma":[0.0059517226,0.0007899574,0.00091014535,0.0008367878,0.00021668719,0.0003753129,0.000055520435,0.0030496283,0.000089230845],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028945517,0.00018774056,0.001998488,0.027571589,0.00039715975,0.0006330026,0.00008117257,0.0000024780452,0.01698057,0.0000023315001,0.8915513,0.060304713],"study_design_scores_gemma":[0.0034336303,0.0037962755,0.06307398,0.107362,0.0044109845,0.00032457983,0.000009186443,0.00009904603,0.0018105595,0.000049380375,0.81482553,0.00080486614],"about_ca_topic_score_codex":0.00010971238,"about_ca_topic_score_gemma":0.000028384216,"teacher_disagreement_score":0.07979041,"about_ca_system_score_codex":0.00086405885,"about_ca_system_score_gemma":0.0012122084,"threshold_uncertainty_score":0.9997155},"labels":[{"model":"gemma","categories":[],"domain":null,"study_design":"not_applicable","genre":"editorial","about_ca_system":false,"about_ca_topic":false,"confidence":"low"},{"model":"gpt","categories":[],"domain":null,"study_design":"design_other","genre":"review","about_ca_system":false,"about_ca_topic":false,"confidence":"medium"}],"label_agreement":"split"},{"id":"W2029187957","doi":"10.1592/phco.26.6.872","title":"Telithromycin‐Induced Digoxin Toxicity and Electrocardiographic Changes","year":2006,"lang":"en","type":"article","venue":"Pharmacotherapy The Journal of Human Pharmacology and Drug Therapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital du Sacré-Cœur de Montréal","funders":"","keywords":"Digoxin; Medicine; Telithromycin; Toxicity; Internal medicine; Pharmacology; Palpitations; Heart failure; Cardiology; Anesthesia","score_opus":0.017505937143671584,"score_gpt":0.3186383650492463,"score_spread":0.3011324279055747,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029187957","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97640586,0.013627296,0.000024314315,0.008862719,0.00034559652,0.00038494047,0.0000026480689,0.000037338414,0.00030930148],"genre_scores_gemma":[0.96439075,0.025154125,0.000009251685,0.009002724,0.0012447791,0.000012790476,9.0098746e-7,0.00003088994,0.00015380104],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984841,0.0004448559,0.00038254398,0.00016476974,0.00020737007,0.00031636492],"domain_scores_gemma":[0.99910694,0.00018594618,0.00030416175,0.000110677494,0.00013852003,0.00015372224],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000916699,0.00025236642,0.00046045377,0.00032421973,0.0005274984,0.000025046358,0.00013645928,0.000082844635,0.00017330727],"category_scores_gemma":[0.0000025914285,0.00015350782,0.00015047425,0.00024183662,0.00031994647,0.00012074441,0.00001738505,0.0006179036,0.0000010845445],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006750263,0.00040242422,0.010003224,0.000016490827,0.000536964,0.000034867568,0.00047377078,0.0000030711176,0.97806054,0.00004926519,0.0050563063,0.00468804],"study_design_scores_gemma":[0.013988751,0.00247191,0.042673506,0.000036099118,0.00062077044,0.0021520169,0.00013795304,0.000026656367,0.8623281,0.00109636,0.074165925,0.00030193],"about_ca_topic_score_codex":0.000023588462,"about_ca_topic_score_gemma":0.000013568453,"teacher_disagreement_score":0.115732424,"about_ca_system_score_codex":0.000028461345,"about_ca_system_score_gemma":0.00005640452,"threshold_uncertainty_score":0.62598675},"labels":[],"label_agreement":null},{"id":"W2029429301","doi":"10.1016/s0735-1097(13)61523-5","title":"DERIVATION AND VALIDATION OF A CLINICAL SCORE TO PREDICT THE RISK OF INCIDENT CARDIAC COMPLICATIONS IN PATIENTS WITH COMMUNITY ACQUIRED PNEUMONIA","year":2013,"lang":"en","type":"article","venue":"Journal of the American College of Cardiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital","funders":"","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Intensive care medicine; Internal medicine; Emergency medicine; Cardiology","score_opus":0.023245293267018657,"score_gpt":0.30016081428001334,"score_spread":0.27691552101299466,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029429301","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99783796,0.000015432739,0.000158031,0.0012000103,0.000099724646,0.00054969435,0.000067559486,0.0000018765356,0.00006970175],"genre_scores_gemma":[0.9996179,0.000049456445,0.00012661517,0.00013790981,0.000045199853,0.00001215573,0.0000018837026,0.0000062266595,0.0000026850958],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99761486,0.0012574372,0.0007704853,0.000063132815,0.00021173236,0.00008236788],"domain_scores_gemma":[0.9968784,0.0005721961,0.0014286435,0.00036475886,0.00069530564,0.00006070544],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00090841216,0.00007541402,0.0007264376,0.00013225875,0.000078808196,0.000001794488,0.00016747504,0.00003946179,9.04548e-7],"category_scores_gemma":[0.00068831036,0.00003916824,0.00018012428,0.00040387284,0.00061896857,0.0000501994,0.000078288205,0.00026195523,2.5531384e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021465505,0.000101891455,0.9932361,0.000015251017,0.00027421754,3.4872792e-7,0.00011361928,0.00073264976,0.004496302,0.000010084376,0.0001610862,0.00064375513],"study_design_scores_gemma":[0.0008675158,0.0020028146,0.9956925,0.00009545551,0.00023991303,0.000025646386,0.00048144232,0.000019046047,0.0003451999,0.000053494987,0.00014439855,0.00003260039],"about_ca_topic_score_codex":0.00016246167,"about_ca_topic_score_gemma":0.000013913104,"teacher_disagreement_score":0.0041511017,"about_ca_system_score_codex":0.000036254583,"about_ca_system_score_gemma":0.00015317828,"threshold_uncertainty_score":0.22806154},"labels":[],"label_agreement":null},{"id":"W2029635400","doi":"10.1007/s10096-012-1712-9","title":"Influence of age, social patterns and nasopharyngeal carriage on antibodies to three conserved pneumococcal surface proteins (PhtD, PcpA and PrtA) in healthy young children","year":2012,"lang":"en","type":"article","venue":"European Journal of Clinical Microbiology & Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"Sanofi Pasteur; Sanofi","keywords":"Carriage; Confidence interval; Streptococcus pneumoniae; Antibody; Medicine; Streptococcaceae; Internal medicine; Immunology; Pediatrics; Biology; Genetics; Bacteria; Pathology","score_opus":0.02913357302650724,"score_gpt":0.3351120696572401,"score_spread":0.30597849663073284,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029635400","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997983,0.00036907257,0.000010295897,0.00062429765,0.00027057002,0.0005128813,0.00012171799,0.000022849963,0.000085337364],"genre_scores_gemma":[0.9980351,0.00027171636,0.000018304205,0.0011710532,0.00046198317,0.0000025505033,0.000008370931,0.000026521218,0.000004448253],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99707526,0.0010940869,0.0011662071,0.00024511022,0.00007596711,0.00034337907],"domain_scores_gemma":[0.99825484,0.00045219978,0.00054803345,0.00014666989,0.0001546925,0.00044357215],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010110965,0.00022283202,0.0008403885,0.00018171572,0.00014372665,0.00001541463,0.00009977089,0.000102474514,0.000008101925],"category_scores_gemma":[0.0009551721,0.00017370719,0.00020486367,0.00013303962,0.00048431545,0.000111675676,0.00010641887,0.00062185054,0.000007078025],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005862066,0.0008774157,0.9579931,0.00008100603,0.00018539192,0.0000996258,0.00018802068,0.00002979517,0.039541144,0.000010832506,0.00005390932,0.0003535359],"study_design_scores_gemma":[0.003205398,0.0042077233,0.9910673,0.00027223423,0.00017024478,0.0005918579,0.000023878656,3.2651428e-7,0.00013559213,0.000007398566,0.00017351657,0.00014453953],"about_ca_topic_score_codex":0.000034139783,"about_ca_topic_score_gemma":0.00012266575,"teacher_disagreement_score":0.03940555,"about_ca_system_score_codex":0.000030397072,"about_ca_system_score_gemma":0.0001484609,"threshold_uncertainty_score":0.7083574},"labels":[],"label_agreement":null},{"id":"W2029864142","doi":"10.1254/fpj.133.43","title":"Pharmacological profile and clinical efficacy of sitafloxacin, a novel quinolone antibacterial agent","year":2009,"lang":"en","type":"review","venue":"Folia Pharmacologica Japonica","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"St. Francis Xavier University","keywords":"Quinolone; Pharmacology; Medicine; Chemistry; Antibiotics; Microbiology; Biology","score_opus":0.1406209493032476,"score_gpt":0.45706362080555024,"score_spread":0.31644267150230265,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029864142","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.029320396,0.9597558,0.000009242218,0.00046348426,0.0021381152,0.005443921,0.00043294352,0.00037693398,0.002059161],"genre_scores_gemma":[0.008272355,0.988518,0.00028005656,0.0008204058,0.0014245328,0.00015728777,0.00017643132,0.00006784695,0.00028309753],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9945559,0.0006938138,0.0023448432,0.0011937768,0.00041505808,0.0007966046],"domain_scores_gemma":[0.99646825,0.00093238306,0.0011986487,0.00050131755,0.0001962347,0.0007031593],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007981158,0.00090293254,0.004403086,0.0003510755,0.0002168514,0.000035575707,0.00043809807,0.0012960166,0.00092838326],"category_scores_gemma":[0.00045318596,0.0006104732,0.0016960913,0.00059353875,0.00067450636,0.00008045388,0.00035973365,0.0018014079,0.00014542569],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015493787,0.017128073,0.00021249459,0.009647406,0.006237936,0.00085688184,0.000045922963,6.1171255e-7,0.06325896,0.00013275698,0.019887457,0.8810421],"study_design_scores_gemma":[0.0065781935,0.0034901877,0.005034128,0.002403127,0.013702809,0.00058838574,0.0000036764109,0.000011955297,0.00017744921,0.000003444522,0.9673731,0.0006335613],"about_ca_topic_score_codex":0.0000032710757,"about_ca_topic_score_gemma":3.9731407e-7,"teacher_disagreement_score":0.9474856,"about_ca_system_score_codex":0.00018649474,"about_ca_system_score_gemma":0.000968205,"threshold_uncertainty_score":0.9999849},"labels":[],"label_agreement":null},{"id":"W2030095751","doi":"10.1186/1471-2334-9-196","title":"Let the sun shine in: effects of ultraviolet radiation on invasive pneumococcal disease risk in Philadelphia, Pennsylvania","year":2009,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; Hospital for Sick Children; Public Health Ontario; SickKids Foundation; University of Toronto; Institute for Clinical Evaluative Sciences","funders":"","keywords":"Medical microbiology; Tropical medicine; Pneumococcal disease; Medicine; Parasitology; Microbiology; Biology; Streptococcus pneumoniae; Immunology; Pathology; Antibiotics","score_opus":0.007207653943518372,"score_gpt":0.25531717560443995,"score_spread":0.24810952166092157,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2030095751","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950228,0.001426725,0.000020062025,0.0012936442,0.0002127871,0.0014976569,0.00006570981,0.00009413031,0.00036651475],"genre_scores_gemma":[0.99561995,0.0015740583,9.2243926e-7,0.0023500593,0.0002024343,0.0001599699,0.00005534693,0.000021445887,0.000015809173],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99828273,0.00031641877,0.0004264058,0.00035210676,0.00030885727,0.00031346423],"domain_scores_gemma":[0.9982067,0.00080238516,0.00019652974,0.00046006168,0.00007084037,0.00026349715],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015804858,0.0002618025,0.00041115689,0.00036780152,0.00012084765,0.000017012186,0.00010830727,0.00008908786,0.000033931068],"category_scores_gemma":[0.0021225945,0.00019051704,0.00023234315,0.00064443494,0.00011507482,0.00012405009,0.000017657487,0.00037386589,0.000029074288],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025845293,0.0021368708,0.98964417,0.00053958764,0.000028452416,0.00011157091,0.000114782684,0.0010667427,0.004234419,0.0001534236,0.0002632039,0.0014483175],"study_design_scores_gemma":[0.003197717,0.0009292332,0.99285275,0.000997881,0.00029615586,0.000014352894,0.000020252994,0.00009963371,0.0005530235,0.0006652727,0.00018245995,0.00019128658],"about_ca_topic_score_codex":0.00010654884,"about_ca_topic_score_gemma":0.00032119642,"teacher_disagreement_score":0.0036813957,"about_ca_system_score_codex":0.00017510129,"about_ca_system_score_gemma":0.00034320683,"threshold_uncertainty_score":0.7769059},"labels":[],"label_agreement":null},{"id":"W2030139428","doi":"10.1371/journal.pone.0071924","title":"Factors Influencing Early and Late Mortality in Adults with Invasive Pneumococcal Disease in Calgary, Canada: A Prospective Surveillance Study","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Children's Hospital; University of Calgary","funders":"Pfizer Canada; Merck Canada; Alberta Children's Hospital Foundation; Children's Hospital Foundation; GlaxoSmithKline; Pfizer","keywords":"Medicine; Epidemiology; Relative risk; Streptococcus pneumoniae; Cause of death; Disease; Pediatrics; Mortality rate; Prospective cohort study; Internal medicine; Confidence interval; Antibiotics","score_opus":0.023563136136062035,"score_gpt":0.224922833163245,"score_spread":0.20135969702718295,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2030139428","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99763495,0.000023483346,1.3750324e-7,0.00012097381,0.000011576618,0.0020760067,0.0000119156575,0.000026363725,0.000094581126],"genre_scores_gemma":[0.9995878,0.0000067327933,0.0000022162853,0.00007381239,0.00001604646,0.0002685504,0.000004006283,0.000014937834,0.0000259503],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99885297,0.00007669381,0.00022609641,0.00030664873,0.00029361597,0.0002439975],"domain_scores_gemma":[0.9993011,0.00007415607,0.00005813433,0.00019428726,0.00012106664,0.00025126836],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000710196,0.00016101387,0.0003630804,0.00010491431,0.00005160387,0.00001655113,0.00004097597,0.000037081238,0.00001274041],"category_scores_gemma":[0.00018666337,0.00011768547,0.000013891846,0.00028160575,0.000058147132,0.00013120048,0.000032830503,0.0002788849,0.0000021504459],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007434736,0.0016330318,0.9927727,0.0001279521,0.00011297209,0.00017999783,0.0020340213,0.0000068131676,0.0030479725,0.0000015082222,3.5257773e-7,0.000008320297],"study_design_scores_gemma":[0.001699799,0.00053125777,0.9964271,0.00040488283,0.00004555847,7.506645e-7,0.0004903335,0.00006832042,0.0001782684,0.000011492825,2.414154e-7,0.00014194884],"about_ca_topic_score_codex":0.5595164,"about_ca_topic_score_gemma":0.9042092,"teacher_disagreement_score":0.34469283,"about_ca_system_score_codex":0.00026895033,"about_ca_system_score_gemma":0.0005474537,"threshold_uncertainty_score":0.47990742},"labels":[],"label_agreement":null},{"id":"W2030187973","doi":"10.1016/j.clinthera.2008.02.003","title":"The impact of indirect (herd) protection on the cost-effectiveness of pneumococcal conjugate vaccine","year":2008,"lang":"en","type":"review","venue":"Clinical Therapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Women's Health Research Institute","funders":"","keywords":"Herd immunity; Medicine; Vaccination; Pneumococcal conjugate vaccine; Herd; Immunization; Pneumococcal polysaccharide vaccine; Incidence (geometry); Cost effectiveness; Pneumococcal disease; Conjugate vaccine; Serotype; Environmental health; Immunology; Streptococcus pneumoniae; Immune system; Veterinary medicine; Biology; Risk analysis (engineering); Antibiotics","score_opus":0.33469342281130365,"score_gpt":0.5030764512071305,"score_spread":0.16838302839582686,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2030187973","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.013286092,0.97493744,0.000058604564,0.0002270766,0.0009985566,0.009319056,0.00008298896,0.00007808548,0.0010121237],"genre_scores_gemma":[0.01576931,0.98330754,0.0000014283713,0.00008310613,0.00030508792,0.00038248414,0.000013421879,0.00006987495,0.00006772661],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99468476,0.0027574645,0.0015798113,0.00035840733,0.0003122249,0.00030730822],"domain_scores_gemma":[0.98932314,0.008130555,0.0011366411,0.0009922362,0.00029821342,0.00011922834],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0021415374,0.0004590957,0.0024383578,0.00011937741,0.00026072207,0.0000136032795,0.00032880367,0.00068140303,0.000021772623],"category_scores_gemma":[0.0007380783,0.00018680838,0.0024514177,0.0006028071,0.00054551184,0.000021749502,0.00006138863,0.001748509,0.000032126634],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005039154,0.0010328493,0.00093913253,0.0022099153,0.003632257,0.000009801622,0.000021638838,0.000009971106,0.00021063171,0.000104818086,0.00004762229,0.99127746],"study_design_scores_gemma":[0.001279956,0.0055745263,0.014500694,0.00882915,0.001840634,0.00022281436,0.000008576021,0.00004422591,0.0001233183,0.00012095588,0.9671751,0.00028004212],"about_ca_topic_score_codex":0.000010066672,"about_ca_topic_score_gemma":0.0000016561254,"teacher_disagreement_score":0.99099743,"about_ca_system_score_codex":0.00016409917,"about_ca_system_score_gemma":0.0008676779,"threshold_uncertainty_score":0.76178247},"labels":[],"label_agreement":null},{"id":"W2030330011","doi":"10.1016/j.ab.2005.09.022","title":"Determination of saccharide content in pneumococcal polysaccharides and conjugate vaccines by GC-MSD","year":2005,"lang":"en","type":"article","venue":"Analytical Biochemistry","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":59,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Women's Health Research Institute","funders":"","keywords":"Monosaccharide; Derivatization; Polysaccharide; Chromatography; Chemistry; Streptococcus pneumoniae; Gas chromatography; Conjugate; High-performance liquid chromatography; Biochemistry; Antibiotics","score_opus":0.018690171981627486,"score_gpt":0.280211757184361,"score_spread":0.2615215852027335,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2030330011","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99591213,0.00016819999,0.0000395662,0.0028331173,0.000021678316,0.00009604388,0.000013619598,0.000019846842,0.0008958126],"genre_scores_gemma":[0.9985952,0.00007620996,0.000053550888,0.00045966287,0.00009614234,0.00000827219,0.000010561757,0.000007969933,0.00069244235],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991437,0.0000115288585,0.00033190876,0.00021684893,0.0001223516,0.0001736495],"domain_scores_gemma":[0.9995037,0.00006390074,0.00006294278,0.00014926807,0.00007359131,0.00014664218],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009568482,0.000120805686,0.00026491465,0.000067022665,0.000027461121,0.000010163014,0.000046439945,0.00012797376,0.00007885778],"category_scores_gemma":[0.00018138198,0.00010166113,0.00006871067,0.00012311403,0.00010734117,0.00004344934,0.00002855796,0.00016025486,0.000007411043],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028900198,0.0001551486,0.09438987,0.0000646356,0.000019736697,0.000007828385,0.000016213007,3.7173396e-7,0.9021183,0.000027090167,0.00022312347,0.0029487556],"study_design_scores_gemma":[0.0013538398,0.00014724246,0.0459474,0.00012462489,0.00013229916,0.0001236918,0.0001101715,0.0023684918,0.94749963,0.000028530661,0.0019886268,0.00017545848],"about_ca_topic_score_codex":0.00004402196,"about_ca_topic_score_gemma":0.000010696768,"teacher_disagreement_score":0.04844247,"about_ca_system_score_codex":0.000050077826,"about_ca_system_score_gemma":0.000046385976,"threshold_uncertainty_score":0.41456205},"labels":[],"label_agreement":null},{"id":"W2031188341","doi":"10.1097/00006454-200008000-00025","title":"LIMITATIONS OF SINGLE POINT PHARMACODYNAMIC ANALYSIS","year":2000,"lang":"en","type":"letter","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Studies","funders":"","keywords":"Pharmacodynamics; Population; Medicine; Pharmacokinetics; Dosing; Streptococcus pneumoniae; Haemophilus influenzae; Statistics; Drug; Pharmacology; Intensive care medicine; Mathematics; Antibiotics; Biology; Microbiology","score_opus":0.031425908128174786,"score_gpt":0.2666997334038345,"score_spread":0.23527382527565974,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031188341","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5430765,0.0024970185,0.0007933617,0.43640313,0.002300782,0.0010928975,0.00043758657,0.00027254628,0.01312617],"genre_scores_gemma":[0.7093383,0.009397018,0.000016540585,0.2576271,0.020927856,0.000058702477,0.00018231732,0.00012549058,0.002326677],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9974011,0.00035487485,0.00081638654,0.00027533315,0.0006924612,0.00045983377],"domain_scores_gemma":[0.99746424,0.00056039717,0.0007185471,0.0005279026,0.00038529315,0.00034362133],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00028358854,0.0003773408,0.000694496,0.0017696539,0.0005300214,0.000076202996,0.00021893565,0.00030582707,0.0010261862],"category_scores_gemma":[0.0002707785,0.0002542232,0.0016157128,0.0019344637,0.0001463769,0.000108412205,0.000034675486,0.002650642,0.00011364097],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015723567,0.0016364321,0.14791542,0.00044661295,0.008723122,0.0021820755,0.00034000684,0.006015575,0.00040756117,0.0000052743167,0.82939655,0.0027741506],"study_design_scores_gemma":[0.0038737531,0.0012108498,0.09646015,0.00012029165,0.21770374,0.006105121,0.000063199725,0.001150631,0.00001283788,0.0015365237,0.67044896,0.0013139114],"about_ca_topic_score_codex":0.000015951608,"about_ca_topic_score_gemma":0.0000055296964,"teacher_disagreement_score":0.20898062,"about_ca_system_score_codex":0.00027140777,"about_ca_system_score_gemma":0.00082085317,"threshold_uncertainty_score":0.999991},"labels":[],"label_agreement":null},{"id":"W2032715240","doi":"10.1128/iai.00977-06","title":"Monocyte Chemoattractant Protein 1 Does Not Contribute to Protective Immunity against Pneumococcal Pneumonia","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Streptococcus pneumoniae; Biology; Monocyte; Pneumonia; Chemotaxis; Microbiology; Immunology; Knockout mouse; Pneumococcal pneumonia; Pneumococcal infections; Immunity; Immune system; Gene; Antibiotics; Medicine; Receptor","score_opus":0.013864786818982127,"score_gpt":0.2652143723112871,"score_spread":0.25134958549230496,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2032715240","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99155104,0.000026505168,0.00054959336,0.0018658016,0.00027463917,0.002058415,0.00003575255,0.00033670754,0.003301528],"genre_scores_gemma":[0.9977529,0.000035438625,0.000035181612,0.00067693816,0.00020230646,0.00040519785,0.000031083036,0.000033588112,0.00082734344],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998289,0.00026029674,0.0004643587,0.00033540258,0.00022613775,0.00042480763],"domain_scores_gemma":[0.9987135,0.000070238064,0.00015728411,0.00047034246,0.00033543658,0.00025319378],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00049954734,0.0003268102,0.00045703852,0.0002830398,0.00085306366,0.00009544001,0.00007827489,0.00024257452,0.000038373804],"category_scores_gemma":[0.00028775693,0.00024823163,0.00016800195,0.00045438527,0.00017070366,0.00023974625,0.00011474758,0.0009631198,0.000071763585],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019641893,0.00055398536,0.020113528,0.00007157331,0.000067581386,0.00001526797,0.00011744007,0.000019395111,0.97485065,0.0001331697,0.000015778234,0.003845194],"study_design_scores_gemma":[0.0012806024,0.0005721685,0.6883735,0.00012436011,0.000054568754,0.00010393294,0.000056552464,0.000072495845,0.28939033,0.00016911964,0.019519748,0.000282651],"about_ca_topic_score_codex":0.0026245343,"about_ca_topic_score_gemma":0.00045033792,"teacher_disagreement_score":0.6854603,"about_ca_system_score_codex":0.0002590929,"about_ca_system_score_gemma":0.00013419952,"threshold_uncertainty_score":0.999997},"labels":[],"label_agreement":null},{"id":"W2032968213","doi":"10.1016/j.ajem.2005.10.001","title":"Managing acute lower respiratory tract infections in an era of antibacterial resistance","year":2006,"lang":"en","type":"review","venue":"The American Journal of Emergency Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Moraxella catarrhalis; Medicine; Streptococcus pneumoniae; Antimicrobial; Respiratory tract infections; Antibiotics; Haemophilus influenzae; Antibiotic resistance; Intensive care medicine; Etiology; Empiric therapy; Drug resistance; Microbiology; Internal medicine; Respiratory system; Biology","score_opus":0.05530386886186922,"score_gpt":0.3984593909188896,"score_spread":0.3431555220570204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2032968213","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0690462,0.923777,0.00006274467,0.0010235724,0.004220852,0.0005721962,0.0000224263,0.00002323491,0.0012517686],"genre_scores_gemma":[0.0043894416,0.99250346,0.00002157667,0.00013243062,0.0026723298,0.000012699604,0.000010471248,0.00006963462,0.00018796817],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9955209,0.0006724817,0.0026403612,0.0002649845,0.0005506037,0.00035069083],"domain_scores_gemma":[0.99509,0.00019860844,0.0034611365,0.0006678281,0.0003684377,0.00021400843],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0012856643,0.00044008813,0.0030545103,0.0007009375,0.00011400316,0.00000426537,0.00039702049,0.000113831826,0.00031478654],"category_scores_gemma":[0.00021517513,0.00025007018,0.00071228814,0.0019208145,0.0005803737,0.00015258268,0.000032548774,0.0015861292,0.0000049144896],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013317897,0.00632232,0.014293917,0.009718315,0.003870239,0.0018071716,0.0012168458,0.000051341744,0.008628861,0.00013435636,0.01683077,0.93579406],"study_design_scores_gemma":[0.00096265,0.00624132,0.008033123,0.016184328,0.004236706,0.00053395476,0.00013451137,9.643362e-7,0.0000026872976,0.00006718161,0.9633133,0.00028931524],"about_ca_topic_score_codex":0.000069099246,"about_ca_topic_score_gemma":0.000067520195,"teacher_disagreement_score":0.9464825,"about_ca_system_score_codex":0.0001622316,"about_ca_system_score_gemma":0.0005960706,"threshold_uncertainty_score":0.9999952},"labels":[],"label_agreement":null},{"id":"W2033330260","doi":"10.1097/inf.0b013e31803c56df","title":"EFFECTIVENESS OF PNEUMOCOCCAL CONJUGATE VACCINE IN GREATER VANCOUVER, CANADA: 2004–2005","year":2007,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; Vancouver Coastal Health; Fraser Health; BC Centre for Disease Control; British Columbia Children's Hospital","funders":"","keywords":"Medicine; Pneumococcal disease; Vaccination; Incidence (geometry); Serotype; Pneumococcal conjugate vaccine; Pediatrics; Pneumococcal infections; Population; Streptococcus pneumoniae; Conjugate vaccine; Immunization; Immunology; Environmental health; Antibody; Antibiotics; Microbiology","score_opus":0.0054208388066319235,"score_gpt":0.23636122261559028,"score_spread":0.23094038380895837,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2033330260","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958154,0.00048479697,0.00024127866,0.00020724814,0.0019741324,0.00045806466,0.000012340663,0.00003112822,0.0007756388],"genre_scores_gemma":[0.9984452,0.00018733382,0.0000023376467,0.00022222083,0.00094921974,0.0000124003045,0.0000017696865,0.000027806642,0.00015169803],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9979866,0.00025477156,0.00060553063,0.00018994792,0.00041708528,0.00054603704],"domain_scores_gemma":[0.99827707,0.00042420166,0.00025635085,0.00026668704,0.00023326607,0.0005424146],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015006039,0.00022912689,0.000409971,0.0004085011,0.0002447042,0.000015949034,0.00011757528,0.000084009516,0.00010831981],"category_scores_gemma":[0.0002919373,0.00014931436,0.00019580798,0.00058286707,0.000049214697,0.00010548875,0.000037193196,0.00070014584,0.000007709386],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00062528806,0.00031298306,0.99430335,0.00020506186,0.000083905,0.0007098676,0.000036649388,0.00077182584,0.0014911501,0.00001846952,0.0013024334,0.00013904148],"study_design_scores_gemma":[0.0032771346,0.0002100974,0.9930706,0.00007085017,0.00048029417,0.0009093218,0.0000344874,0.000033298405,0.00023631878,0.00018621705,0.0013228862,0.00016850307],"about_ca_topic_score_codex":0.00822245,"about_ca_topic_score_gemma":0.0778818,"teacher_disagreement_score":0.06965935,"about_ca_system_score_codex":0.00063866674,"about_ca_system_score_gemma":0.0018413344,"threshold_uncertainty_score":0.9983819},"labels":[],"label_agreement":null},{"id":"W2033584989","doi":"10.1016/j.vaccine.2012.05.064","title":"Safety and immunogenicity of fully liquid DTaP5-IPV-Hib pediatric combination vaccine (Pediacel®) compared to DTaP3-HBV-IPV/Hib (Infanrix® Hexa) when coadministered with heptavalent pneumococcal conjugate vaccine (PCV7) as a booster at 11–18 months of age: A phase III, modified double-blind, randomized, controlled, multicenter study","year":2012,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"Sanofi Pasteur","keywords":"Immunogenicity; Hib vaccine; Medicine; Booster dose; Pneumococcal conjugate vaccine; Hepatitis B; Pediatrics; Virology; Immunology; Conjugate vaccine; Immunization; Immune system; Biology; Microbiology; Streptococcus pneumoniae","score_opus":0.027227693323737336,"score_gpt":0.31228869183353675,"score_spread":0.28506099850979943,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2033584989","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9776266,0.0011681431,0.00038273635,0.0016207754,0.0005913277,0.01794412,0.00012585556,0.00015188874,0.00038850942],"genre_scores_gemma":[0.9962439,0.00035431347,0.00007553984,0.00045142596,0.00042194105,0.0010950449,0.00020224959,0.00013061478,0.0010249877],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9925527,0.0009120712,0.0034924105,0.00096780725,0.0010237838,0.0010512434],"domain_scores_gemma":[0.9939318,0.0009233589,0.001756718,0.0012555403,0.0011248628,0.0010077722],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.002654952,0.0010821344,0.005143861,0.001088367,0.00036285646,0.000061115876,0.00035983179,0.00034104413,0.00056242466],"category_scores_gemma":[0.000371722,0.00077819166,0.00071529363,0.0007969681,0.000072917726,0.00044587205,0.000445865,0.0005732332,0.000035447745],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.8352883,0.010559851,0.10494573,0.00038683924,0.0019909944,0.000085080836,0.003537283,0.00010761826,0.042735428,0.000038090257,0.0002611975,0.000063586456],"study_design_scores_gemma":[0.93486434,0.009786285,0.038859654,0.00023078096,0.0061586923,0.00015364849,0.0008785868,0.0009057711,0.0065747052,0.0000053297667,0.00080006494,0.00078216824],"about_ca_topic_score_codex":0.00056861,"about_ca_topic_score_gemma":0.0006485014,"teacher_disagreement_score":0.09957601,"about_ca_system_score_codex":0.0002899101,"about_ca_system_score_gemma":0.00023100102,"threshold_uncertainty_score":0.9994669},"labels":[],"label_agreement":null},{"id":"W2034185773","doi":"10.1097/01.ccm.0000235676.72139.61","title":"Different pathogens at different time points in pneumonia: Do potential anticoagulant therapies need to be time—and species—tailored?","year":2006,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; St. Michael's Hospital","funders":"","keywords":"Medicine; Pneumonia; Zhàng; Intensive care medicine; Coronavirus disease 2019 (COVID-19); Internal medicine; Law; Infectious disease (medical specialty)","score_opus":0.014754519405274573,"score_gpt":0.26856665710616523,"score_spread":0.25381213770089067,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2034185773","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9495513,0.0009507659,0.00007539495,0.046517424,0.0003725968,0.00054720516,0.0000637764,0.00010448628,0.0018170559],"genre_scores_gemma":[0.9953647,0.00004866754,0.000018342118,0.0024843945,0.00077675737,0.000036358695,0.00011357805,0.00004782849,0.001109366],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99754024,0.00013199144,0.00055383734,0.0005472763,0.0006046059,0.00062207365],"domain_scores_gemma":[0.9986219,0.0002410647,0.000037588063,0.00039649932,0.0001934167,0.0005095543],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00011373174,0.00041130802,0.00089873077,0.0003557345,0.00019922848,0.000031458534,0.00010555312,0.00019122829,0.0011976404],"category_scores_gemma":[0.00028781488,0.0002696361,0.00013637535,0.00024101084,0.00054726325,0.000043047887,0.00018951138,0.00035487604,0.00011211362],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015747763,0.000362867,0.057744287,0.0001902672,0.000040202573,0.0007499744,0.0010560399,0.0000033008162,0.9371283,0.0004993944,0.0014068489,0.00066102407],"study_design_scores_gemma":[0.0040603755,0.0022757305,0.9775321,0.0006350231,0.0005140504,0.00053983444,0.0016738703,0.0002256312,0.006239611,0.00043003165,0.0053568054,0.000516921],"about_ca_topic_score_codex":0.00004218972,"about_ca_topic_score_gemma":0.000061718136,"teacher_disagreement_score":0.9308887,"about_ca_system_score_codex":0.00025571042,"about_ca_system_score_gemma":0.00002633077,"threshold_uncertainty_score":0.99997556},"labels":[],"label_agreement":null},{"id":"W2034337435","doi":"10.1016/j.idc.2004.07.002","title":"Empiric treatment of ambulatory community-acquired pneumonia: always include treatment for atypical agents","year":2004,"lang":"en","type":"review","venue":"Infectious Disease Clinics of North America","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Health Sciences Centre","funders":"","keywords":"Medicine; Empiric therapy; Empiric treatment; Intensive care medicine; Pneumonia; Community-acquired pneumonia; Ambulatory; Antimicrobial; Antibiotics; Atypical pneumonia; Antibiotic therapy; Internal medicine; Alternative medicine; Pathology","score_opus":0.11500438049866576,"score_gpt":0.4198119625100938,"score_spread":0.304807582011428,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2034337435","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.11199131,0.8768227,0.00012280629,0.00006636607,0.00091971614,0.006567897,0.0030491827,0.00027829257,0.00018173571],"genre_scores_gemma":[0.052355263,0.9441964,0.00004240413,0.00016713799,0.00026916663,0.0012789759,0.0014381718,0.00016239636,0.00009006268],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9958797,0.0005169684,0.0020644697,0.00061935233,0.00037063655,0.00054887746],"domain_scores_gemma":[0.9944388,0.0010718971,0.001682577,0.0016011342,0.000353541,0.00085201435],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00013152513,0.00096953136,0.004250395,0.00059393584,0.00041094128,0.000014840939,0.00025629712,0.00038519467,0.000038981434],"category_scores_gemma":[0.00032112596,0.00074825995,0.0035274394,0.00074871565,0.0006605508,0.00006508106,0.00010172195,0.00032583455,0.00005181642],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039380195,0.018777471,0.053309184,0.017645996,0.0039584497,0.00010087082,0.00023933608,0.00013345628,0.0000017707919,0.000005549161,0.00006885437,0.9053653],"study_design_scores_gemma":[0.004028509,0.013449102,0.03126996,0.0042680115,0.013607118,0.00005487749,0.000017289285,0.000017718596,0.0000013255392,0.00004937264,0.93265045,0.00058624294],"about_ca_topic_score_codex":0.00018866625,"about_ca_topic_score_gemma":0.00012212868,"teacher_disagreement_score":0.9325816,"about_ca_system_score_codex":0.0014002606,"about_ca_system_score_gemma":0.0033700608,"threshold_uncertainty_score":0.9994968},"labels":[],"label_agreement":null},{"id":"W2034604020","doi":"","title":"Neumonía adquirida en la comunidad (NAC), ¿nuevas guías, nuevos cambios?","year":2011,"lang":"es","type":"article","venue":"Infectio","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Humanities; Medicine; Political science; Philosophy","score_opus":0.022125961634576644,"score_gpt":0.27663463505046804,"score_spread":0.2545086734158914,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2034604020","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7578096,0.00053375924,0.00012768921,0.0006591241,0.0032509135,0.000706538,0.000061823426,0.00048622064,0.23636436],"genre_scores_gemma":[0.99296576,0.0006206887,0.000031542953,0.0013652648,0.0014200899,0.0001039723,0.000020219068,0.00012843494,0.0033440092],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9966908,0.00065243355,0.00073231006,0.0006623658,0.00042689397,0.00083518325],"domain_scores_gemma":[0.99741,0.00040782604,0.00030050258,0.0010741019,0.00025837106,0.000549182],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0006147898,0.0006283234,0.00076101214,0.0005283703,0.0005072595,0.00014112736,0.00031447943,0.0007604173,0.0017095825],"category_scores_gemma":[0.0004287288,0.0005862427,0.00046483675,0.0007223253,0.00052784,0.00034436656,0.0002040429,0.0013414712,0.0043581123],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001363122,0.002570626,0.9107175,0.0005550312,0.0011023412,0.00083749235,0.0043616286,0.000014852117,0.044768266,0.008795165,0.010192907,0.015947912],"study_design_scores_gemma":[0.001575498,0.0012749592,0.5226355,0.0004176851,0.0005832449,0.0007025461,0.00023101707,0.000043326378,0.0034390544,0.00019398055,0.46834627,0.0005568893],"about_ca_topic_score_codex":0.0016956156,"about_ca_topic_score_gemma":0.0002028865,"teacher_disagreement_score":0.45815334,"about_ca_system_score_codex":0.00029087174,"about_ca_system_score_gemma":0.0005271334,"threshold_uncertainty_score":0.9996589},"labels":[],"label_agreement":null},{"id":"W2035774269","doi":"10.1517/14728214.8.2.297","title":"Ketolides: an emerging treatment for macrolide-resistant respiratory infections, focusing on S. pneumoniae","year":2003,"lang":"en","type":"review","venue":"Expert Opinion on Emerging Drugs","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre","funders":"","keywords":"Telithromycin; Ketolide; Streptococcus pneumoniae; Microbiology; Macrolide Antibiotics; Efflux; Erythromycin; Medicine; Antibiotics; Biology","score_opus":0.11605327297256299,"score_gpt":0.4387001288850574,"score_spread":0.3226468559124944,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2035774269","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00021776505,0.98555696,0.00011779423,0.00062129716,0.005621754,0.003712559,0.00013507792,0.00061622116,0.0034005425],"genre_scores_gemma":[0.00011176229,0.99145895,0.000085036314,0.0018596003,0.002694683,0.0023812896,0.00027802086,0.00040911837,0.00072153006],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9946277,0.00058767945,0.0015674685,0.0015426244,0.0006431871,0.0010313065],"domain_scores_gemma":[0.9964931,0.0004576674,0.0007365654,0.0015053834,0.00020029246,0.0006070073],"candidate_categories":["metaepi_narrow"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.00057384674,0.0014034171,0.0026278903,0.0016258925,0.0012659855,0.00013121561,0.00024840626,0.0007031461,0.00011049461],"category_scores_gemma":[0.00018597637,0.0011159227,0.001721666,0.0008148754,0.000121476,0.00019561216,0.000043535038,0.0007420612,0.00014431766],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010203086,0.0018842443,0.000013428586,0.0026689542,0.0007562869,0.000042259417,0.00088582357,0.00004534359,0.00031661015,0.0010559973,0.0034569376,0.9887721],"study_design_scores_gemma":[0.0016070659,0.0037937795,0.000004300496,0.012959288,0.00028416567,0.0000712527,0.00026159902,0.0000209437,0.000115254334,0.000021105607,0.9798583,0.0010029948],"about_ca_topic_score_codex":0.000049397808,"about_ca_topic_score_gemma":0.000009378893,"teacher_disagreement_score":0.98776907,"about_ca_system_score_codex":0.0018565428,"about_ca_system_score_gemma":0.0009990447,"threshold_uncertainty_score":0.9998716},"labels":[],"label_agreement":null},{"id":"W2035865711","doi":"10.1097/inf.0b013e318233049d","title":"Safety and Immunogenicity of a 13-valent Pneumococcal Conjugate Vaccine in Healthy Infants and Toddlers Given With Routine Pediatric Vaccinations in Canada","year":2011,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Izaak Walton Killam Health Centre; Dalhousie University; BC Children's Hospital; University of British Columbia; Alberta Health Services; University of Calgary","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Immunogenicity; Tolerability; Vaccination; Booster dose; Serotype; Diphtheria; Tetanus; Streptococcus pneumoniae; Haemophilus influenzae; Pediatrics; Toddler; Conjugate vaccine; Adverse effect; Immunology; Antibody; Immunization; Internal medicine; Microbiology; Antibiotics; Biology","score_opus":0.0089710795749005,"score_gpt":0.2211627498154777,"score_spread":0.2121916702405772,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2035865711","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969434,0.0012383519,0.00001763591,0.00088516716,0.00015928622,0.0005289441,0.000033548527,0.000014353662,0.00017927363],"genre_scores_gemma":[0.9935937,0.005874287,0.000006926814,0.00022870269,0.0002490507,0.000018070408,0.0000020851621,0.000019331394,0.000007847754],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99823964,0.00021144199,0.0006936883,0.00021118407,0.00026838927,0.0003756787],"domain_scores_gemma":[0.9986827,0.00017574379,0.00035030633,0.00020019847,0.0001571967,0.00043386844],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00050375843,0.00021386365,0.00040832034,0.0004934258,0.0002487816,0.000014192624,0.000083694744,0.00005605549,0.000053532513],"category_scores_gemma":[0.0001720723,0.00014436764,0.00006233777,0.00075150083,0.000029780884,0.00013252343,0.000061140774,0.0006392253,0.0000010083223],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015413313,0.0002409665,0.99698347,0.0001145269,0.00004693254,0.00013372985,0.00043070607,0.00017178881,0.00002418668,0.0000085602705,0.000018270008,0.00028555578],"study_design_scores_gemma":[0.0056346487,0.00058044656,0.99187434,0.00002916173,0.0004422278,0.0008802274,0.00015054569,0.00014974573,0.0000045754805,0.00007911951,0.000022464528,0.00015249652],"about_ca_topic_score_codex":0.09827293,"about_ca_topic_score_gemma":0.24077554,"teacher_disagreement_score":0.14250262,"about_ca_system_score_codex":0.00041330728,"about_ca_system_score_gemma":0.0022973737,"threshold_uncertainty_score":0.9077318},"labels":[],"label_agreement":null},{"id":"W2036390843","doi":"10.3201/eid2005.131371","title":"Extensively Drug-Resistant<i>Streptococcus pneumoniae</i>, South Korea, 2011–2012","year":2014,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Asia Pacific Foundation of Canada","funders":"Samsung; Ministry of Education, Science and Technology; National Research Foundation of Korea; National Research Foundation","keywords":"Streptococcus pneumoniae; Pneumococcal infections; Medicine; Drug resistance; Drug; Antimicrobial; Antimicrobial drug; Microbiology; Multi drug resistant; Antibiotics; Intensive care medicine; Biology; Pharmacology","score_opus":0.007626068746898355,"score_gpt":0.24635448707585103,"score_spread":0.23872841832895267,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2036390843","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9758111,0.0006659769,0.00049463514,0.0019606112,0.001302873,0.0007228787,0.000080973885,0.0012838664,0.017677031],"genre_scores_gemma":[0.9932436,0.00005113766,0.000008265789,0.0027944553,0.0009096542,0.00016578852,0.0000396192,0.00008672314,0.0027007903],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9976792,0.00016160474,0.00046416008,0.00061198295,0.0004275368,0.000655524],"domain_scores_gemma":[0.9978926,0.00015217993,0.00021348649,0.0007066445,0.00040326876,0.00063179206],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00016445134,0.00042862736,0.00055259396,0.00036930977,0.000602321,0.00006916751,0.00013107386,0.00012002246,0.00079691113],"category_scores_gemma":[0.00043218042,0.00037720168,0.000426657,0.00035271578,0.00021324077,0.00023180245,0.000082043895,0.00034985386,0.00096946233],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059670052,0.00085220544,0.9358068,0.00025475703,0.00034358024,0.00010729722,0.0004522201,0.00020643334,0.024418835,0.0006319271,0.030707557,0.006158686],"study_design_scores_gemma":[0.002498718,0.00052894553,0.7817071,0.00021155347,0.0008836246,0.00009104341,0.00023721151,0.0002495901,0.0006791355,0.0005487725,0.21159393,0.0007703546],"about_ca_topic_score_codex":0.000070028975,"about_ca_topic_score_gemma":0.000050026447,"teacher_disagreement_score":0.18088637,"about_ca_system_score_codex":0.0001180124,"about_ca_system_score_gemma":0.00018210387,"threshold_uncertainty_score":0.999868},"labels":[],"label_agreement":null},{"id":"W2036946218","doi":"10.1007/s11908-014-0405-1","title":"Corticosteroids in the Treatment of Severe Community-Acquired Pneumonia","year":2014,"lang":"en","type":"article","venue":"Current Infectious Disease Reports","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Interior Health; University of British Columbia; Kelowna General Hospital","funders":"","keywords":"Medicine; Community-acquired pneumonia; Pneumonia; Clinical trial; Intensive care medicine; Randomized controlled trial; Placebo; Corticosteroid; Adjunctive treatment; Internal medicine; Alternative medicine; Pathology","score_opus":0.030048532895004594,"score_gpt":0.31079383315420306,"score_spread":0.28074530025919847,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2036946218","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953287,0.00054558425,0.000021234595,0.00025675193,0.0008229126,0.0006602195,0.00000756949,0.00008177256,0.0022752245],"genre_scores_gemma":[0.999012,0.00037506284,8.7295314e-7,0.00018805178,0.00013794248,0.00016572975,0.000035935198,0.000017509461,0.0000668875],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983231,0.0004011508,0.00053332286,0.00019715268,0.000294425,0.00025087534],"domain_scores_gemma":[0.9983363,0.000196264,0.00027760988,0.00086631,0.0001089565,0.00021453781],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034542673,0.0002006102,0.00035862392,0.00016389976,0.00019434975,0.000021634156,0.000055318487,0.00005780635,0.000031282205],"category_scores_gemma":[0.00025187706,0.0001321441,0.00024157928,0.0003067508,0.00008698934,0.00005793758,0.00001947687,0.00018482716,0.0000135329865],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003065216,0.004808749,0.9776171,0.00018768449,0.00005814048,0.00017044552,0.0005882414,0.000052664614,0.001406971,0.000032087115,0.00011154461,0.014935712],"study_design_scores_gemma":[0.0010101293,0.0010461938,0.8840887,0.00016413,0.00033245338,0.0007414027,0.000058950034,0.000042968783,0.00008800852,0.0003387557,0.11194029,0.00014805063],"about_ca_topic_score_codex":0.000081287915,"about_ca_topic_score_gemma":0.000060022918,"teacher_disagreement_score":0.111828744,"about_ca_system_score_codex":0.000240575,"about_ca_system_score_gemma":0.00014960366,"threshold_uncertainty_score":0.538868},"labels":[],"label_agreement":null},{"id":"W2037409969","doi":"10.1126/science.1198545","title":"Rapid Pneumococcal Evolution in Response to Clinical Interventions","year":2011,"lang":"en","type":"article","venue":"Science","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":912,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"Wellcome Trust","keywords":"Biology; Lineage (genetic); Streptococcus pneumoniae; Genetics; Serotype; Population; Microbiology; Insertion sequence; Drug resistance; Virology; Gene; Antibiotics; Transposable element; Genome; Medicine","score_opus":0.1372938170234429,"score_gpt":0.41502251649283706,"score_spread":0.27772869946939416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2037409969","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99460876,0.000023540737,0.0006137484,0.0009684768,0.0005984187,0.0002168227,0.0000011952319,0.000041681258,0.0029273278],"genre_scores_gemma":[0.9989658,0.000003913345,0.0002818094,0.00033858078,0.000045851975,0.000019922161,1.5190619e-7,0.0000035282028,0.00034042605],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998966,0.00010646123,0.0002886405,0.00025086317,0.0001720639,0.00021602106],"domain_scores_gemma":[0.99934214,0.00004956955,0.000032134463,0.00025558186,0.000086715045,0.00023385783],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022733423,0.00005392604,0.00011354428,0.00041748927,0.00011351959,0.000009594477,0.00013610086,0.000042197025,0.00014038716],"category_scores_gemma":[0.0013466136,0.000044339737,0.000099361074,0.0010723331,0.00039386775,0.00013236448,0.00006731565,0.000167196,0.00034896564],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039572865,0.0007411474,0.62209433,0.000014131461,0.0000048173847,0.00004673843,0.00065999926,0.0000023306197,0.36851445,0.0005389573,0.000070052316,0.006917316],"study_design_scores_gemma":[0.00030214625,0.0007445001,0.9942879,0.00009092023,0.0000070086467,0.000034041997,0.00010102127,0.000030385338,0.0006487666,0.00012423671,0.0035770598,0.000051975614],"about_ca_topic_score_codex":0.0000141476285,"about_ca_topic_score_gemma":0.000035712575,"teacher_disagreement_score":0.3721936,"about_ca_system_score_codex":0.000119819524,"about_ca_system_score_gemma":0.0003448103,"threshold_uncertainty_score":0.44853637},"labels":[],"label_agreement":null},{"id":"W2037662049","doi":"10.3402/ijch.v73.22691","title":"Impact of pneumococcal vaccines use on invasive pneumococcal disease in Nunavik (Quebec) from 1997 to 2010","year":2014,"lang":"en","type":"article","venue":"International Journal of Circumpolar Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Sherbrooke; Nunavik Regional Board of Health and Social Services; Institut National de Santé Publique du Québec; Université Laval","funders":"Office of Polar Programs; Canadian Institutes of Health Research","keywords":"Medicine; Pneumococcal conjugate vaccine; Incidence (geometry); Serotype; Pneumococcal polysaccharide vaccine; Streptococcus pneumoniae; Pediatrics; Vaccination; Epidemiology; Pneumococcal infections; Outbreak; Immunization; Pneumococcal disease; Immunology; Virology; Internal medicine; Antibody; Biology; Antibiotics; Microbiology","score_opus":0.02474672021189712,"score_gpt":0.3453154270629074,"score_spread":0.3205687068510103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2037662049","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9888526,0.000070525566,0.0002597926,0.0092227785,0.0011118917,0.00026665314,0.00017351104,0.00001243137,0.000029785224],"genre_scores_gemma":[0.99645364,0.00010254691,0.000048079313,0.002459836,0.0008321872,0.0000043399114,0.00003523493,0.00002512273,0.000039009192],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9976254,0.0002245512,0.0009886858,0.0002191295,0.00066763116,0.00027460387],"domain_scores_gemma":[0.9972553,0.00048562957,0.000581764,0.00025854935,0.000569998,0.000848744],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004332098,0.00020628933,0.00056396046,0.00081192434,0.00004545776,0.000041686944,0.00028415,0.00009182434,0.00011087573],"category_scores_gemma":[0.001599932,0.00016125212,0.0003793476,0.00021150189,0.00004082866,0.00028881532,0.0000432767,0.00057160016,0.00003464507],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009050659,0.0009745245,0.91867936,0.000030337507,0.00019974484,0.0001535777,0.0004539452,0.0009897293,0.07378045,0.00015805964,0.0005941416,0.0030810575],"study_design_scores_gemma":[0.0018693609,0.0013231299,0.99267966,0.00076080323,0.000031980017,0.00009227553,0.000024095229,0.00009059492,0.00040328037,0.00030749504,0.0022973316,0.000119977616],"about_ca_topic_score_codex":0.008510946,"about_ca_topic_score_gemma":0.002526108,"teacher_disagreement_score":0.07400031,"about_ca_system_score_codex":0.0008236743,"about_ca_system_score_gemma":0.0024870518,"threshold_uncertainty_score":0.99809146},"labels":[],"label_agreement":null},{"id":"W2037809088","doi":"10.3201/eid1909.121466","title":"Macrolide-Resistant<i>Mycoplasma pneumoniae</i>in Humans, Ontario, Canada, 2010–2011","year":2013,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Mycoplasma pneumoniae; 23S ribosomal RNA; Microbiology; Drug resistance; Virology; Biology; Mycoplasma; Streptococcus pneumoniae; Antibiotic resistance; Antibiotics; Medicine; Gene; Pneumonia; Genetics; Internal medicine","score_opus":0.006606911017480705,"score_gpt":0.21918423030440543,"score_spread":0.21257731928692472,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2037809088","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9843381,0.00030525896,0.000008967159,0.0013176204,0.0012225129,0.00061594346,0.000035751407,0.00025106248,0.01190477],"genre_scores_gemma":[0.99025184,0.000041613723,0.0000050715844,0.0017170059,0.00020291736,0.00025297757,0.00003455753,0.00005358111,0.0074404273],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9979344,0.00007305719,0.0004867326,0.00046604197,0.00038694314,0.0006527967],"domain_scores_gemma":[0.9986769,0.0000838915,0.00012293697,0.0004882572,0.00014802004,0.0004800052],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000071894705,0.00034440777,0.00045473198,0.00029917245,0.00034746717,0.00006163864,0.00011748543,0.00010807819,0.00572058],"category_scores_gemma":[0.00007939875,0.00032119488,0.00018389571,0.00027403148,0.0000876465,0.0002125319,0.00005514545,0.00041489044,0.00042933048],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001490656,0.00033149085,0.9500235,0.000074541924,0.00009033579,0.0001888507,0.00013951745,0.00013357068,0.005071871,0.00006849505,0.043359183,0.0005037529],"study_design_scores_gemma":[0.0011861676,0.0001747492,0.9256824,0.00010247087,0.00014097725,0.00011033199,0.0000822567,0.000043287826,0.00009704939,0.00017481846,0.07183714,0.00036832975],"about_ca_topic_score_codex":0.9544055,"about_ca_topic_score_gemma":0.980925,"teacher_disagreement_score":0.028477956,"about_ca_system_score_codex":0.0009609201,"about_ca_system_score_gemma":0.0014818495,"threshold_uncertainty_score":0.999924},"labels":[],"label_agreement":null},{"id":"W2038286422","doi":"10.1016/j.jinf.2010.03.033","title":"Pneumonia during the first two years of life does not increase risk of respiratory infections in preschool children","year":2010,"lang":"en","type":"article","venue":"Journal of Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Pneumonia; Medicine; Pharyngitis; Otitis; Pediatrics; Respiratory system; Antibiotics; Respiratory infection; Internal medicine; Respiratory disease; Surgery; Lung","score_opus":0.005576961557223647,"score_gpt":0.24949066459871078,"score_spread":0.24391370304148713,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2038286422","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998615,0.000032647793,0.000018650027,0.00019970455,0.0006714428,0.0002670492,0.000010868787,0.000017130198,0.000167486],"genre_scores_gemma":[0.9991305,0.00015287935,0.00001344238,0.00011083022,0.00054922805,0.000009177181,4.643638e-7,0.000017914637,0.000015567379],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99844265,0.00015033665,0.0008383969,0.000116786396,0.00029795128,0.00015390533],"domain_scores_gemma":[0.99811983,0.00019079706,0.00094719115,0.00029277374,0.0003072966,0.00014213442],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00088131486,0.00012876923,0.00036592846,0.00062442536,0.00014297484,0.000014345994,0.00008293383,0.00013514937,0.000055349858],"category_scores_gemma":[0.0016234957,0.000083738414,0.00028199892,0.0004633071,0.00014697821,0.00023911896,0.000037681486,0.0011705187,0.0000050953595],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009726588,0.00035353392,0.79630786,0.000033647582,0.00013359507,0.00000549695,0.00009919473,0.00054713455,0.20194152,0.000013490331,0.000023339897,0.00044389023],"study_design_scores_gemma":[0.0020893558,0.0004589381,0.9812083,0.0001277773,0.00018214325,0.0002696864,0.000015467207,0.000019382056,0.01428929,0.000032776756,0.0012279608,0.00007890002],"about_ca_topic_score_codex":0.0010639564,"about_ca_topic_score_gemma":0.0024530676,"teacher_disagreement_score":0.18765223,"about_ca_system_score_codex":0.00007110799,"about_ca_system_score_gemma":0.00026170159,"threshold_uncertainty_score":0.50853866},"labels":[],"label_agreement":null},{"id":"W2038521527","doi":"10.1097/inf.0000000000000267","title":"Trends in Asymptomatic Nasopharyngeal Colonization With Streptococcus pneumoniae After Introduction of the 13-valent Pneumococcal Conjugate Vaccine in Calgary, Canada","year":2014,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Institute of Population and Public Health; South Health Campus; Canadian Science Centre for Human and Animal Health; Alberta Children's Hospital; Public Health Agency of Canada; University of Alberta; University of Calgary; Alberta Health Services","funders":"","keywords":"Streptococcus pneumoniae; Pneumococcal conjugate vaccine; Colonization; Conjugate; Asymptomatic; Pneumococcal infections; Medicine; Microbiology; Virology; Immunology; Biology; Internal medicine; Antibiotics","score_opus":0.003078503856025118,"score_gpt":0.20767914857654796,"score_spread":0.20460064472052283,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2038521527","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99450684,0.000108475855,0.00003563227,0.0039849635,0.0006413615,0.00050559064,0.000009816585,0.00002353009,0.00018376544],"genre_scores_gemma":[0.99810183,0.000074158874,0.0000015072208,0.00033522217,0.001278447,0.000086152184,0.0000063733933,0.000027908953,0.00008839337],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99785626,0.00042067966,0.00064464356,0.00023188833,0.00048352455,0.0003630144],"domain_scores_gemma":[0.9987137,0.00011344522,0.00037390838,0.00036844265,0.00018151889,0.0002490094],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004572301,0.00023946517,0.00036488508,0.0004648024,0.00021947177,0.000030372315,0.00013965108,0.000071351606,0.00011287579],"category_scores_gemma":[0.00020701879,0.00013364408,0.0001303968,0.0012837945,0.00006505023,0.000118686985,0.000047179496,0.0007217513,0.000003015657],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021531562,0.0003307882,0.99279004,0.000080417434,0.00004147759,0.00005770489,0.0001230882,0.0050836424,0.00026909375,0.000012794679,0.0003519109,0.0006437005],"study_design_scores_gemma":[0.002547655,0.0003486483,0.99397993,0.000049959133,0.00041529132,0.00041316377,0.000023155424,0.0016553743,0.00002792869,0.00007034818,0.00032011178,0.00014845876],"about_ca_topic_score_codex":0.0053159744,"about_ca_topic_score_gemma":0.10084634,"teacher_disagreement_score":0.09553037,"about_ca_system_score_codex":0.0005340494,"about_ca_system_score_gemma":0.0009412854,"threshold_uncertainty_score":0.91556084},"labels":[],"label_agreement":null},{"id":"W2038682055","doi":"10.1111/j.1574-695x.2008.00382.x","title":"Commonly invasive serotypes of<i>Streptococcus pneumoniae</i>trigger a reduced innate immune response compared with serotypes rarely responsible for invasive infection","year":2008,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Child and Family Research Institute; University of British Columbia; BC Children's Hospital","funders":"","keywords":"Serotype; Streptococcus pneumoniae; Biology; Innate immune system; Immune system; Immunology; Pneumococcal infections; Tumor necrosis factor alpha; Microbiology; Acquired immune system; Antibiotics","score_opus":0.021780340092855153,"score_gpt":0.27020917456240656,"score_spread":0.2484288344695514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2038682055","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.988757,0.00089682156,0.00015414726,0.007148375,0.00069427193,0.00190963,0.00012118326,0.00021547666,0.00010307378],"genre_scores_gemma":[0.99628115,0.0008567503,0.00014233697,0.0010630507,0.00010596824,0.00051682023,0.00019520971,0.00007091919,0.0007677955],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99603343,0.0011314744,0.0011214573,0.00073443726,0.00018562732,0.0007935455],"domain_scores_gemma":[0.99485296,0.002825478,0.0005914415,0.00079285825,0.00068839965,0.00024885347],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008494298,0.00050821685,0.0014606076,0.00068911683,0.00043575786,0.000007400216,0.00035106667,0.0011043461,0.00021020723],"category_scores_gemma":[0.0035870497,0.0003639751,0.0003359755,0.0006971212,0.002673358,0.00011944693,0.00019831824,0.00092934427,0.00009177185],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.011846037,0.000621066,0.036711235,0.0001057957,0.0010580317,0.00027229046,0.0005563361,0.000008016879,0.9471256,0.00005777237,0.0012371213,0.00040071327],"study_design_scores_gemma":[0.011489784,0.009102609,0.3354445,0.00085822964,0.00032273258,0.00880313,0.00015545529,0.000004243775,0.59723586,0.000078199504,0.03596458,0.00054066046],"about_ca_topic_score_codex":0.00027977745,"about_ca_topic_score_gemma":0.00043600812,"teacher_disagreement_score":0.34988973,"about_ca_system_score_codex":0.00020873014,"about_ca_system_score_gemma":0.0035447797,"threshold_uncertainty_score":0.9998812},"labels":[],"label_agreement":null},{"id":"W2038865767","doi":"10.1097/01.mcp.0000158727.20783.70","title":"Progressive and nonresolving pneumonia","year":2005,"lang":"en","type":"review","venue":"Current Opinion in Internal Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University Health Network; University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Pneumonia; Medicine; Intensive care medicine; Community-acquired pneumonia; Atypical pneumonia; Immunology; Internal medicine","score_opus":0.14413595354657693,"score_gpt":0.4749925180155548,"score_spread":0.3308565644689779,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2038865767","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000020938938,0.9893086,0.000026549224,0.00057408493,0.0081350235,0.0010164576,0.000013485833,0.00006340564,0.00084147125],"genre_scores_gemma":[0.00005301293,0.993911,0.000014662828,0.00005548344,0.0054143746,0.00023223502,0.000076845005,0.0000566946,0.00018568271],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99745345,0.00014367058,0.0010815052,0.00056841073,0.0003754569,0.00037753105],"domain_scores_gemma":[0.99856126,0.00024148989,0.00043850514,0.00034253395,0.00009146611,0.000324722],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00030735505,0.00052376353,0.0018985756,0.0008445776,0.00006387869,0.000020283775,0.00017594938,0.00026748926,0.00023522625],"category_scores_gemma":[0.0003709401,0.0003443449,0.00023725361,0.00038764745,0.00030092892,0.0000764232,0.00013657265,0.0014364053,0.00006919359],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001062228,0.00013843829,0.0006360543,0.019583607,0.0000819643,0.000044085613,0.00012937731,7.089303e-8,0.000002805165,0.00007090136,0.0016841777,0.9776179],"study_design_scores_gemma":[0.0007356218,0.0003355633,0.00053261284,0.20604382,0.0002736339,0.0017957783,0.000019634781,0.000015479814,7.9621294e-8,0.00000847156,0.79002553,0.00021376822],"about_ca_topic_score_codex":0.000012215961,"about_ca_topic_score_gemma":0.0000015586852,"teacher_disagreement_score":0.9774041,"about_ca_system_score_codex":0.00025649837,"about_ca_system_score_gemma":0.00022292462,"threshold_uncertainty_score":0.9999009},"labels":[],"label_agreement":null},{"id":"W2039316903","doi":"10.1128/aac.45.9.2631-2634.2001","title":"Interspecies Recombination Contributes Minimally to Fluoroquinolone Resistance in <i>Streptococcus pneumoniae</i>","year":2001,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen Elizabeth II Health Sciences Centre; University of Toronto; Dalhousie University; Hamilton Health Sciences; McMaster University; Mount Sinai Hospital","funders":"","keywords":"Streptococcus pneumoniae; Ciprofloxacin; Quinolone; Microbiology; Topoisomerase IV; Biology; DNA gyrase; Streptococcus; Gene; Streptococcaceae; Genetics; Bacteria; Antibiotics; Escherichia coli","score_opus":0.012579006323092666,"score_gpt":0.2691550926883059,"score_spread":0.25657608636521323,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039316903","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9438183,0.00004038866,0.00005158665,0.053570792,0.00015080073,0.00044245593,0.0000068325735,0.000045797296,0.0018730498],"genre_scores_gemma":[0.97191036,0.0010512084,0.00007316332,0.024425894,0.000058175498,0.000022396023,0.000009719562,0.000019317438,0.002429773],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99912506,0.000022334276,0.00025456963,0.00027609008,0.000076469405,0.00024545225],"domain_scores_gemma":[0.99961853,0.000019306957,0.000052930733,0.00015491471,0.000071991984,0.00008232263],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008305907,0.00015036005,0.00026173197,0.0001744143,0.000086415195,0.000041400875,0.00006453065,0.00009191919,0.00006888644],"category_scores_gemma":[0.000019857205,0.00013529716,0.000059175934,0.00030955492,0.00006756943,0.00007191846,0.000022365628,0.000120538774,0.000023387518],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036627747,0.0006306797,0.5149778,0.000057463,0.000089954425,0.00008713634,0.0008488429,0.0000016927701,0.4299487,0.00018239004,0.046505675,0.0063033677],"study_design_scores_gemma":[0.0026494735,0.00017894257,0.568118,0.0002819717,0.000016281598,0.00002291689,0.00007093658,0.0000055812843,0.010680375,0.000081831546,0.41773635,0.0001573796],"about_ca_topic_score_codex":0.000017038312,"about_ca_topic_score_gemma":0.00016934559,"teacher_disagreement_score":0.4192683,"about_ca_system_score_codex":0.00007664913,"about_ca_system_score_gemma":0.000029162184,"threshold_uncertainty_score":0.5517258},"labels":[],"label_agreement":null},{"id":"W2039390468","doi":"10.1007/s11908-001-0024-5","title":"The role of quinolones in upper respiratory tract infections","year":2001,"lang":"en","type":"article","venue":"Current Infectious Disease Reports","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Medicine; Respiratory tract infections; Streptococcus pneumoniae; Clinical trial; Ciprofloxacin; Sinusitis; Intensive care medicine; Otitis; Pharyngitis; Moraxella catarrhalis; Internal medicine; Antibiotics; Surgery; Respiratory system; Microbiology","score_opus":0.017211692650414532,"score_gpt":0.30454937693473183,"score_spread":0.2873376842843173,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039390468","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98566735,0.0063044876,0.000009961005,0.00024579093,0.001366604,0.00054469396,0.0000046787973,0.00015337349,0.0057030525],"genre_scores_gemma":[0.9981013,0.0012524574,3.813426e-7,0.000085082356,0.00024485122,0.00018674748,0.0000062712547,0.000024714973,0.00009819948],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981712,0.00010769659,0.00069374463,0.000317906,0.00033456367,0.00037487378],"domain_scores_gemma":[0.99839425,0.00014323776,0.0003333028,0.00060914614,0.00020931533,0.00031076465],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036202004,0.00020201983,0.00029280756,0.00033689907,0.00028281877,0.000028271263,0.000048614493,0.00009343859,0.000068266396],"category_scores_gemma":[0.00067112216,0.00014840048,0.00029821633,0.0006421719,0.00013342586,0.00013057719,0.00003915593,0.0004089997,0.000029372351],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002643687,0.0022605502,0.98277915,0.000042674183,0.00004640007,0.00023918103,0.000036416594,0.00005653042,0.0013285414,0.00021114554,0.00018724772,0.01278574],"study_design_scores_gemma":[0.00031793,0.00014623546,0.6469908,0.00011597623,0.000106326894,0.00045552675,0.000025902433,0.000014426148,0.00013521532,0.0010672285,0.35050783,0.00011665788],"about_ca_topic_score_codex":0.00004916699,"about_ca_topic_score_gemma":0.00007283112,"teacher_disagreement_score":0.35032058,"about_ca_system_score_codex":0.00023833213,"about_ca_system_score_gemma":0.00047985,"threshold_uncertainty_score":0.6051596},"labels":[],"label_agreement":null},{"id":"W2039702214","doi":"10.1179/joc.2006.18.6.582","title":"Gemifloxacin for the Management of Community-Acquired Respiratory Tract Infections","year":2006,"lang":"en","type":"review","venue":"Journal of Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal University Hospital","funders":"","keywords":"Gemifloxacin; Streptococcus pneumoniae; Respiratory tract infections; Medicine; Antibiotics; Antimicrobial; Intensive care medicine; Antibacterial agent; Respiratory tract; Antibiotic resistance; Microbiology; Respiratory system; Biology; Internal medicine","score_opus":0.08463538580862333,"score_gpt":0.3956732234291914,"score_spread":0.3110378376205681,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039702214","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00043742222,0.9952756,0.0009670918,0.00044041604,0.0005300311,0.00119478,0.000025470837,0.000018664252,0.0011105221],"genre_scores_gemma":[0.00017471933,0.99785167,0.00013218034,0.0006849958,0.00060639426,0.00006124565,0.0000060859365,0.00006877518,0.0004139422],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980005,0.0002148776,0.0012303243,0.000083391744,0.0002851599,0.0001857478],"domain_scores_gemma":[0.9971675,0.0005124326,0.0014489155,0.0005254957,0.00026580167,0.00007984324],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010543638,0.00029183223,0.0014644188,0.0003460321,0.00024778355,0.000019890575,0.00028575739,0.00024641922,0.00003630985],"category_scores_gemma":[0.00001881624,0.00016669238,0.0015338586,0.00038463395,0.00013549013,0.00006251885,0.000018335228,0.0007060116,0.0000028322331],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042336666,0.0017616393,0.000046796908,0.011539487,0.0026723766,0.0000130318485,0.000078946716,0.000009243944,0.0001362121,0.000101000034,0.007683576,0.9759154],"study_design_scores_gemma":[0.0015586108,0.0010614905,0.0003715114,0.005763066,0.0028814655,0.0003275468,0.00004773745,6.7915744e-7,0.000027470038,0.00007355069,0.98775744,0.00012943875],"about_ca_topic_score_codex":0.0000039114852,"about_ca_topic_score_gemma":0.0000018102091,"teacher_disagreement_score":0.98007387,"about_ca_system_score_codex":0.00016407625,"about_ca_system_score_gemma":0.00029263672,"threshold_uncertainty_score":0.6797518},"labels":[],"label_agreement":null},{"id":"W2040018453","doi":"10.1016/j.vaccine.2011.07.097","title":"The immunogenicity of pneumococcal polysaccharides in infants and children: A meta-regression","year":2011,"lang":"en","type":"review","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Cantox Health Sciences International","funders":"","keywords":"Immunogenicity; Serotype; Streptococcus pneumoniae; Immunology; Pneumococcal vaccine; Immunization; Medicine; Immune system; Biology; Microbiology; Antibiotics","score_opus":0.05680713617988707,"score_gpt":0.3378228087606174,"score_spread":0.2810156725807303,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040018453","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.011152935,0.9876387,8.3877524e-7,0.0000626513,0.00012922598,0.0008567842,0.000024772973,0.000023750035,0.00011032342],"genre_scores_gemma":[0.0041616624,0.9954531,0.0000061412225,0.000027808213,0.00008600311,0.00010257558,0.000012509164,0.000032760752,0.000117421885],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99840456,0.00016460377,0.00077372434,0.00029146438,0.00012340736,0.00024224787],"domain_scores_gemma":[0.9987225,0.00019572486,0.00039234568,0.000542064,0.000051809504,0.00009558702],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038172884,0.00037615624,0.0020727934,0.0002854798,0.00011327943,0.0000111492345,0.00016756942,0.00027238764,0.00008274509],"category_scores_gemma":[0.00015747937,0.00016075595,0.00059636135,0.0004024914,0.000036710433,0.00004524421,0.00014042507,0.00054611545,0.00001216614],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000875334,0.00029064415,0.009246884,0.00317296,0.004164029,0.000021718373,0.00007684371,7.097794e-8,0.00064099947,0.00010810029,0.00011204674,0.9820782],"study_design_scores_gemma":[0.001262373,0.00039415617,0.057232767,0.008307213,0.011918265,0.0009922984,0.0000085887295,0.000001440296,0.000117504016,0.00004458274,0.91934943,0.0003713628],"about_ca_topic_score_codex":0.00013724992,"about_ca_topic_score_gemma":0.000059670016,"teacher_disagreement_score":0.9817068,"about_ca_system_score_codex":0.000031751704,"about_ca_system_score_gemma":0.0001672535,"threshold_uncertainty_score":0.65554374},"labels":[],"label_agreement":null},{"id":"W2040244976","doi":"10.1016/j.vaccine.2009.03.063","title":"Serotypes and antimicrobial susceptibilities of invasive Streptococcus pneumoniae pre- and post-seven valent pneumococcal conjugate vaccine introduction in Alberta, Canada, 2000–2006","year":2009,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":77,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; University of Calgary; University of Alberta","funders":"","keywords":"Streptococcus pneumoniae; Pneumococcal conjugate vaccine; Penicillin; Serotype; Pneumococcal infections; Antibiotic resistance; Erythromycin; Incidence (geometry); Pneumococcal disease; Microbiology; Medicine; Antibiotics; Conjugate vaccine; Virology; Biology","score_opus":0.004341443651671867,"score_gpt":0.21995938330492026,"score_spread":0.2156179396532484,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040244976","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98176163,0.00020424635,0.0000011397668,0.016756495,0.00018638777,0.0008960592,0.00005993357,0.000026756254,0.00010732292],"genre_scores_gemma":[0.9978249,0.00021591617,0.000012768682,0.00058741344,0.00030247567,0.00001709277,0.00004738108,0.0000201578,0.0009718954],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983909,0.00007657117,0.0005747599,0.00045661302,0.00015865582,0.00034247324],"domain_scores_gemma":[0.9990417,0.00011651562,0.00016112873,0.00029590394,0.0002036592,0.00018111724],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014827962,0.00027887226,0.00058575993,0.00025721535,0.00009082085,0.000017168377,0.00006530462,0.00013248352,0.00006426773],"category_scores_gemma":[0.00019657171,0.00024048814,0.00005385652,0.00025778444,0.000028305178,0.00015303514,0.000046209178,0.00028754797,0.000002415066],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026833726,0.00021538451,0.42136,0.00019690255,0.000055944412,0.000029346496,0.00053771917,0.00006704349,0.5750956,0.000043687854,0.0010631289,0.0010669256],"study_design_scores_gemma":[0.002500841,0.0013111322,0.95723605,0.00014656571,0.00010958299,0.00022421303,0.00019757761,0.00003233476,0.036390603,0.00003687476,0.0015928877,0.00022136126],"about_ca_topic_score_codex":0.10607528,"about_ca_topic_score_gemma":0.53004205,"teacher_disagreement_score":0.538705,"about_ca_system_score_codex":0.00015323084,"about_ca_system_score_gemma":0.00054701325,"threshold_uncertainty_score":0.98068213},"labels":[],"label_agreement":null},{"id":"W2040351198","doi":"10.1016/s0732-8893(02)00445-5","title":"Fluoroquinolones for the treatment of outpatient community-acquired pneumonia","year":2002,"lang":"en","type":"review","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Community-acquired pneumonia; Medicine; Antimicrobial; Dosing; Pneumonia; Intensive care medicine; Adverse effect; Antibacterial agent; Antibiotic resistance; Drug; Antibiotics; Pharmacology; Internal medicine; Biology; Microbiology","score_opus":0.04604365252582301,"score_gpt":0.3146846086591227,"score_spread":0.2686409561332997,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040351198","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.005419914,0.9897815,0.000020015901,0.00011597743,0.0005950395,0.0030325511,0.00091738906,0.000059461665,0.00005815803],"genre_scores_gemma":[0.007353809,0.9902293,0.0000023483644,0.0001947368,0.00014830596,0.0014091119,0.00048603775,0.000039516122,0.00013681124],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984816,0.00038214086,0.0005383964,0.0002782424,0.000032671334,0.00028697628],"domain_scores_gemma":[0.99443334,0.0044200546,0.00029905804,0.00056762877,0.0001001241,0.00017978821],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000101334015,0.00042798414,0.0013504102,0.00017631307,0.0005292112,0.0000123610425,0.00009944853,0.00029627536,0.00004180293],"category_scores_gemma":[0.0006344988,0.0002466211,0.00068521476,0.00014411862,0.0005229986,0.000020483465,0.000039093546,0.00022913078,0.000023323246],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004962635,0.0043719313,0.0029358144,0.011323316,0.001649477,0.000029856314,0.00035904575,0.0000021858093,0.00007825314,0.000093899056,0.0007408595,0.9783657],"study_design_scores_gemma":[0.00092277257,0.0032985355,0.0009426133,0.0020417487,0.0065762405,0.00019060925,0.000014223475,0.000003030547,0.000004888779,0.000022255,0.98576033,0.00022275784],"about_ca_topic_score_codex":0.000027789403,"about_ca_topic_score_gemma":0.000019565774,"teacher_disagreement_score":0.98501945,"about_ca_system_score_codex":0.000110336114,"about_ca_system_score_gemma":0.000167274,"threshold_uncertainty_score":0.9999986},"labels":[],"label_agreement":null},{"id":"W2040355516","doi":"10.1007/s40266-014-0229-6","title":"Recurrent Pneumonia: A Review with Focus on Clinical Epidemiology and Modifiable Risk Factors in Elderly Patients","year":2014,"lang":"en","type":"review","venue":"Drugs & Aging","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Heritage Foundation for Medical Research","keywords":"Medicine; Pneumonia; Epidemiology; Risk factor; COPD; Internal medicine; Disease; Intensive care medicine; Pediatrics","score_opus":0.08240994011346876,"score_gpt":0.41165003303321607,"score_spread":0.3292400929197473,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040355516","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0056362986,0.9908879,0.000016711003,0.00030308645,0.00043431582,0.0017733885,0.000031847834,0.00006163729,0.0008548568],"genre_scores_gemma":[0.0015501633,0.9973624,0.000023535616,0.00052431016,0.00016880198,0.00017487082,0.000080143196,0.000063619336,0.000052167114],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9948259,0.0018885792,0.0017197814,0.0008302054,0.00020740696,0.0005281137],"domain_scores_gemma":[0.99575883,0.002205921,0.0010517339,0.0005863328,0.00007337971,0.00032381876],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0022362343,0.0005668861,0.004391698,0.0003259334,0.00012550071,0.000011105123,0.00013083711,0.00038252852,0.000011965794],"category_scores_gemma":[0.0015275077,0.00034098525,0.0005092972,0.00036798287,0.00013925823,0.000046145346,0.000067041365,0.0018860835,0.000051107643],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000075271496,0.00022391965,0.052417252,0.01876829,0.0001573776,0.000011806606,0.000053237236,0.000001703815,1.5681886e-8,0.000027705677,0.00034862474,0.9279825],"study_design_scores_gemma":[0.00068917155,0.0013291123,0.003371521,0.10975284,0.0017263887,0.00002412324,0.000004542391,0.000014112891,3.312154e-8,0.000038031816,0.8827092,0.00034094238],"about_ca_topic_score_codex":0.0002111376,"about_ca_topic_score_gemma":0.000020879366,"teacher_disagreement_score":0.9276416,"about_ca_system_score_codex":0.0001587679,"about_ca_system_score_gemma":0.00021023412,"threshold_uncertainty_score":0.9999042},"labels":[],"label_agreement":null},{"id":"W2040556080","doi":"10.1097/inf.0b013e3182717edf","title":"Safety and Immunogenicity of a Hexavalent Vaccine Administered at 2, 4 and 6 Months of Age With or Without a Heptavalent Pneumococcal Conjugate Vaccine","year":2012,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Surrey Memorial Hospital; Children's Hospital of Eastern Ontario; McGill University; Sanofi (Canada); Coquitlam College; Centre hospitalier universitaire de Québec; Nova Scotia Health Authority; Centre Hospitalier Universitaire Sainte-Justine; Dalhousie University; Université de Montréal; University of Manitoba; Izaak Walton Killam Health Centre; Montreal Children's Hospital","funders":"","keywords":"Medicine; Filamentous haemagglutinin adhesin; Tetanus; Diphtheria; Pertactin; Seroconversion; Toxoid; Immunogenicity; Virology; Inactivated Poliovirus Vaccine; Vaccination; Immunology; Antigen; Antibody; Internal medicine; Pertussis toxin","score_opus":0.012627062951076426,"score_gpt":0.26305006035517975,"score_spread":0.25042299740410334,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040556080","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99562466,0.002885969,0.00006749176,0.0003469887,0.00018434996,0.0006606196,0.000044386547,0.00003013334,0.00015541872],"genre_scores_gemma":[0.9941693,0.0049254317,0.000017330529,0.00012596518,0.00052453816,0.00001588036,0.0000027624417,0.000031318075,0.00018747586],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982361,0.00019656756,0.00067758444,0.00018009369,0.00033376788,0.00037585577],"domain_scores_gemma":[0.99808866,0.00018240469,0.0005510258,0.00031572877,0.00019029222,0.00067190797],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00054242,0.00027052627,0.0006205192,0.00021399603,0.0003691753,0.000017649156,0.00007587247,0.00007503547,0.00013392494],"category_scores_gemma":[0.00015521217,0.00014399536,0.00016057567,0.00027924197,0.00013333802,0.000137395,0.00011993291,0.00036768336,0.0000030586887],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0060355533,0.0006813928,0.9862875,0.0003380428,0.0003368244,0.00006172479,0.0006402415,0.000016586739,0.0053022616,0.000009665621,0.00004152814,0.00024872326],"study_design_scores_gemma":[0.0068905815,0.0018619284,0.98162466,0.00008677315,0.0027378993,0.0057407594,0.00013498832,0.00006523876,0.00018583554,0.000016522476,0.00047054136,0.00018425913],"about_ca_topic_score_codex":0.00003312418,"about_ca_topic_score_gemma":0.000044175627,"teacher_disagreement_score":0.0056790346,"about_ca_system_score_codex":0.000101607046,"about_ca_system_score_gemma":0.00025431236,"threshold_uncertainty_score":0.58719605},"labels":[],"label_agreement":null},{"id":"W2041253911","doi":"10.1007/s11908-010-0105-4","title":"Mycoplasma pneumoniae: Innocent Bystander or a True Cause of Central Nervous System Disease?","year":2010,"lang":"en","type":"article","venue":"Current Infectious Disease Reports","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Mycoplasma pneumoniae; Immunology; Encephalitis; Biology; Disease; Central nervous system; Mycoplasma; Mollicutes; Microbiology; Medicine; Pneumonia; Pathology; Virus","score_opus":0.01880982894377931,"score_gpt":0.29304574474341594,"score_spread":0.27423591579963663,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2041253911","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98871535,0.00047414086,0.000098209544,0.0002460935,0.0077895634,0.0012203945,0.00011562071,0.0005345474,0.0008060883],"genre_scores_gemma":[0.99844307,0.00015280844,0.0000032260657,0.00008548646,0.0006360352,0.00021360225,0.00007098245,0.00006940564,0.00032536042],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9966977,0.00009188162,0.0010524474,0.0006787289,0.00075949193,0.0007197439],"domain_scores_gemma":[0.99575996,0.000085047184,0.0006623341,0.0011247816,0.00047129055,0.0018965962],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00024353924,0.0004455073,0.00065234705,0.0003456392,0.00025970713,0.000057207522,0.00007773219,0.00015809613,0.00022955779],"category_scores_gemma":[0.0007329474,0.00034075047,0.0004690379,0.00058628636,0.00015255957,0.00016211998,0.00008501417,0.0006795401,0.00003412225],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023634474,0.0018272722,0.98239625,0.0023111166,0.0002675051,0.005554061,0.00007379095,0.00007718488,0.0034427845,0.0002579337,0.0014909451,0.0020648052],"study_design_scores_gemma":[0.0019419553,0.000309141,0.8916056,0.0012300034,0.002374773,0.009635524,0.000057045196,0.0003858,0.00038560908,0.00009507393,0.091228865,0.000750609],"about_ca_topic_score_codex":0.000027053327,"about_ca_topic_score_gemma":0.000054030344,"teacher_disagreement_score":0.09079066,"about_ca_system_score_codex":0.00043923175,"about_ca_system_score_gemma":0.0018342903,"threshold_uncertainty_score":0.99990445},"labels":[],"label_agreement":null},{"id":"W2042330338","doi":"10.1097/inf.0b013e31823eed8e","title":"High Prevalence of Acute Respiratory Tract Infections Among Warao Amerindian Children in Venezuela in Relation to Low Immunization Coverage and Chronic Malnutrition","year":2011,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Respiratory tract infections; Malnutrition; Odds ratio; Pediatrics; Vaccination; Anthropometry; Confidence interval; Cross-sectional study; Immunology; Internal medicine; Respiratory system; Pathology","score_opus":0.006674271603988907,"score_gpt":0.23295115119151755,"score_spread":0.22627687958752865,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042330338","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99812025,0.0003614883,0.00027941467,0.00009553446,0.0002280036,0.00075072265,0.000034971785,0.000035300127,0.00009432837],"genre_scores_gemma":[0.99691266,0.0024909875,0.000008211772,0.00011775526,0.00037386405,0.000053402066,0.0000066363828,0.000024375195,0.000012104972],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998501,0.0002621156,0.00054683053,0.0002002123,0.00022229004,0.00026755297],"domain_scores_gemma":[0.9990233,0.00006937627,0.00029802497,0.0002445566,0.00011315584,0.00025158245],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043567197,0.00017647193,0.00024304865,0.0009587215,0.00024077695,0.000025010055,0.0000836572,0.00011264111,0.00007615342],"category_scores_gemma":[0.0001550471,0.00014755742,0.00010552118,0.0009988957,0.0000870634,0.00036548034,0.000037212743,0.000631034,0.000010630592],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009448604,0.00088582136,0.9960609,0.00010799577,0.00004416279,0.000042804408,0.00038233382,0.001396952,0.00058767863,0.000033532146,0.000011419408,0.00035188204],"study_design_scores_gemma":[0.0018393506,0.0008001228,0.9956202,0.00015005656,0.00043829918,0.00028368292,0.000010475825,0.000055960456,0.0000524988,0.0006011098,0.0000043958394,0.00014383407],"about_ca_topic_score_codex":0.00016597428,"about_ca_topic_score_gemma":0.00006068995,"teacher_disagreement_score":0.002129499,"about_ca_system_score_codex":0.0003633747,"about_ca_system_score_gemma":0.0003516389,"threshold_uncertainty_score":0.6017217},"labels":[],"label_agreement":null},{"id":"W2042369437","doi":"10.1111/j.1462-5822.2007.01035.x","title":"Toll-like receptor 2 contributes to antibacterial defence against pneumolysin-deficient pneumococci","year":2007,"lang":"en","type":"article","venue":"Cellular Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Pneumolysin; Streptococcus pneumoniae; Microbiology; TLR2; Biology; Innate immune system; Pneumococcal infections; Virulence; Toll-like receptor; Immune system; Immunology; Antibiotics; Gene","score_opus":0.00889217600003847,"score_gpt":0.2464817198950684,"score_spread":0.23758954389502993,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042369437","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9900824,0.00025757105,0.0029147798,0.0016595926,0.0031135739,0.00069279416,0.00006470741,0.0001495554,0.0010650655],"genre_scores_gemma":[0.99223346,0.000028800607,0.00020378259,0.006068821,0.00035933536,0.000017103537,0.00027105346,0.000036126563,0.0007814969],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979939,0.00009669019,0.0005368087,0.00055224734,0.00006854643,0.00075182394],"domain_scores_gemma":[0.9988248,0.00011304608,0.00011665514,0.00047385393,0.00018964702,0.00028203297],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005092646,0.00028803808,0.0005353962,0.00034610627,0.00023072443,0.000026175516,0.00018147254,0.00033834652,0.00015729718],"category_scores_gemma":[0.00012996433,0.000248244,0.00021066604,0.00044450074,0.00021488954,0.00003547175,0.00011778138,0.00030519968,0.0011209828],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013888437,0.00023254668,0.006506046,0.000025233894,0.00007577902,0.00012170439,0.000089426736,0.0000045276456,0.9896544,0.00015708685,0.0022924913,0.0007018793],"study_design_scores_gemma":[0.0007719997,0.00029882073,0.0027296164,0.00004507476,0.000053009135,0.00015700841,0.000058861795,0.0000019325525,0.5193623,0.000005511841,0.47631896,0.00019695723],"about_ca_topic_score_codex":0.000007035581,"about_ca_topic_score_gemma":0.000017213226,"teacher_disagreement_score":0.47402647,"about_ca_system_score_codex":0.00017814442,"about_ca_system_score_gemma":0.00014013276,"threshold_uncertainty_score":0.99999696},"labels":[],"label_agreement":null},{"id":"W2042418184","doi":"10.1007/s00439-005-0092-y","title":"Variants of the SFTPA1 and SFTPA2 genes and susceptibility to tuberculosis in Ethiopia","year":2005,"lang":"en","type":"article","venue":"Human Genetics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal General Hospital; SickKids Foundation; McGill University; Hospital for Sick Children; McGill Genome Centre; McGill University Health Centre","funders":"","keywords":"Tuberculosis; Biology; Mycobacterium tuberculosis; Haplotype; Immunology; Gene; Human genetics; Genetics; Immune system; Allele; Pathology; Medicine","score_opus":0.024725418039172633,"score_gpt":0.3002289051472731,"score_spread":0.27550348710810046,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042418184","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99751294,0.00040944378,0.000006159399,0.0012585506,0.00004173748,0.00023792741,0.000004224684,0.000008124189,0.000520881],"genre_scores_gemma":[0.99879813,0.00013779863,0.00017593417,0.0006552758,0.0000733282,0.0000060256534,4.937958e-7,0.000007845002,0.00014518919],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994121,0.000043657823,0.0001800503,0.00015504641,0.00009550676,0.000113610964],"domain_scores_gemma":[0.99958444,0.00002259217,0.00002724662,0.00024837672,0.000039975905,0.000077345],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012929073,0.00007619631,0.00013890033,0.00005983633,0.00007609346,0.0000073987185,0.00004298353,0.00007171174,0.000034203018],"category_scores_gemma":[0.000032238702,0.000054605756,0.000026075904,0.00011298876,0.000105511324,0.000013377764,0.000069740534,0.000106452775,0.0000029069663],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000045109873,0.00007978313,0.7055854,0.000047202564,0.000011717612,0.000001013866,0.00069618283,0.000034921315,0.28895655,0.00009265422,0.00004798712,0.0044420506],"study_design_scores_gemma":[0.00037995962,0.00013535758,0.9854251,0.000038519604,0.000036595713,0.00001554151,0.000058065445,0.000055109653,0.010103943,0.00008785654,0.0036052421,0.000058700243],"about_ca_topic_score_codex":0.000030528783,"about_ca_topic_score_gemma":0.001074721,"teacher_disagreement_score":0.2798397,"about_ca_system_score_codex":0.000022032116,"about_ca_system_score_gemma":0.000027362603,"threshold_uncertainty_score":0.22267582},"labels":[],"label_agreement":null},{"id":"W2042503957","doi":"10.1016/s1098-3015(10)75091-9","title":"PIN33 POTENTIAL HEALTH AND ECONOMIC IMPACT OF NEW PNEUMOCOCCAL VACCINES IN CANADA: A MARKOV MODELLING APPROACH","year":2009,"lang":"en","type":"article","venue":"Value in Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Markov chain; Markov model; Pneumococcal disease; Medicine; Virology; Computer science; Streptococcus pneumoniae; Biology; Machine learning; Microbiology","score_opus":0.034273044790419614,"score_gpt":0.29680151148760725,"score_spread":0.26252846669718766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042503957","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939809,0.0011090597,0.00049414433,0.0036874386,0.00009493936,0.0004981186,0.000010162539,0.000011976753,0.00011325048],"genre_scores_gemma":[0.99808365,0.0007139618,0.00034315645,0.0007122298,0.00010938025,0.0000037259258,0.000008010585,0.0000112333555,0.0000146406555],"study_design_codex":"simulation_or_modeling","study_design_gemma":"observational","domain_scores_codex":[0.99852943,0.00011598745,0.0006174588,0.00024335776,0.000099031095,0.0003947245],"domain_scores_gemma":[0.99917716,0.000028582353,0.00015849811,0.00017108995,0.000012347336,0.0004523484],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034011476,0.00013859378,0.0005274378,0.00025276933,0.000048829912,0.000005505157,0.000048357375,0.000054876313,0.0000070092],"category_scores_gemma":[0.000013255058,0.000120540324,0.000060493898,0.00017859925,0.000011027371,0.000053075066,0.000011208952,0.0002614192,5.486867e-7],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015787383,0.00017256827,0.19146913,0.00038111059,0.00002273558,0.000016168555,0.00065844326,0.79797095,0.00028640375,0.00016604434,0.0003608182,0.0083377585],"study_design_scores_gemma":[0.0021104873,0.0011726841,0.5168302,0.00028735423,0.000006504642,0.00017625977,0.00018183135,0.4786162,0.0000067873543,0.00035495491,0.00011661894,0.00014011655],"about_ca_topic_score_codex":0.9566116,"about_ca_topic_score_gemma":0.21827278,"teacher_disagreement_score":0.7383388,"about_ca_system_score_codex":0.0022211003,"about_ca_system_score_gemma":0.01587052,"threshold_uncertainty_score":0.9897086},"labels":[],"label_agreement":null},{"id":"W2042614942","doi":"10.1139/w09-078","title":"Contribution of ClpE to virulence of<i>Streptococcus pneumoniae</i>","year":2009,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"University of Illinois at Urbana-Champaign; National Natural Science Foundation of China","keywords":"Virulence; Microbiology; Streptococcus pneumoniae; Biology; Mutant; Pathogenesis; Bacteria; Strain (injury); Gene; Immunology; Genetics","score_opus":0.008545741055017436,"score_gpt":0.24858971175994296,"score_spread":0.24004397070492553,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042614942","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99506426,0.00034146343,0.00013703025,0.0036209915,0.00030661622,0.00015225443,0.000059211612,0.0000026068983,0.00031557836],"genre_scores_gemma":[0.99837023,0.00001866568,0.0000381067,0.0014463522,0.00008358657,6.443624e-7,0.000004112281,0.00000401888,0.000034263125],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991587,0.000052765823,0.00045365197,0.00008100461,0.00003240794,0.00022149357],"domain_scores_gemma":[0.9986784,0.000031965392,0.0002523768,0.00012825869,0.00051601353,0.00039301507],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019794203,0.00008212683,0.00036932278,0.0003432499,0.000040812134,0.000002500623,0.000103823084,0.000120345525,0.00006748177],"category_scores_gemma":[0.00022271677,0.00006792653,0.00013037385,0.00020285296,0.00012119695,0.000029632896,0.000003905127,0.00019007568,0.000011055834],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022953214,0.000027814007,0.030603016,0.000007033152,0.000035840738,0.00006567377,0.00009237904,0.000019513918,0.96621037,0.0001654149,0.0013475966,0.0014024245],"study_design_scores_gemma":[0.0020807926,0.0062566637,0.25324345,0.00047720375,0.0002021564,0.0041871467,0.000115355375,0.0000019498796,0.5365697,0.00021248222,0.19643964,0.00021341776],"about_ca_topic_score_codex":0.00018435661,"about_ca_topic_score_gemma":0.0013969517,"teacher_disagreement_score":0.4296406,"about_ca_system_score_codex":0.00009837218,"about_ca_system_score_gemma":0.0010268019,"threshold_uncertainty_score":0.27699634},"labels":[],"label_agreement":null},{"id":"W2043982682","doi":"10.1186/cc7474","title":"Telavancin for the treatment of hospital-acquired pneumonia in severely ill and older patients: the ATTAIN studies","year":2009,"lang":"en","type":"article","venue":"Critical Care","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Medicine; Pneumonia; Hospital-acquired pneumonia; Vancomycin; Intensive care medicine; Critically ill; Critical illness; Emergency medicine; Internal medicine; Staphylococcus aureus","score_opus":0.027038427681966095,"score_gpt":0.35050870207403073,"score_spread":0.32347027439206466,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2043982682","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9787137,0.0053715077,0.000015736698,0.01474581,0.00018838432,0.0007775955,0.000030752108,0.000014351989,0.00014216457],"genre_scores_gemma":[0.99814904,0.00023580664,0.000016753336,0.0013868021,0.00007201355,0.00009701995,0.0000034354332,0.000006917621,0.00003220582],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994116,0.000029488858,0.00016462716,0.00013740342,0.00009470927,0.00016217506],"domain_scores_gemma":[0.9989854,0.0004794139,0.000016897427,0.00016948431,0.00030859798,0.000040217914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000040267743,0.00010317508,0.00020546572,0.000027381142,0.0001406515,0.000007575183,0.00003394704,0.000046775178,0.0000034382722],"category_scores_gemma":[0.00044889443,0.00004879499,0.00007539828,0.000080900856,0.00022936275,0.000028635779,0.000008701716,0.000041218736,0.0000010581889],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000612004,0.00762395,0.6442206,0.0016265142,0.0006130828,0.00011840742,0.09697769,0.000023361234,0.005958415,0.0075284215,0.0030354986,0.23166206],"study_design_scores_gemma":[0.0021218949,0.007879654,0.9619833,0.00011986832,0.00027746786,0.000004466457,0.012551931,0.00002248813,0.00081284216,0.00032787368,0.013783192,0.00011501457],"about_ca_topic_score_codex":0.000006102515,"about_ca_topic_score_gemma":0.000020421869,"teacher_disagreement_score":0.3177627,"about_ca_system_score_codex":0.00008240982,"about_ca_system_score_gemma":0.0000245109,"threshold_uncertainty_score":0.1989802},"labels":[],"label_agreement":null},{"id":"W2044523483","doi":"10.1503/cmaj.111256","title":"Community-acquired pneumonia: Figure 1:","year":2012,"lang":"en","type":"article","venue":"Canadian Medical Association Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumonia; Blood pressure; Community-acquired pneumonia; Heart rate; Anesthesia; Surgery; Cardiology; Internal medicine","score_opus":0.01642137396881116,"score_gpt":0.2679399627529807,"score_spread":0.25151858878416955,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2044523483","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.86632913,0.00024610013,0.00004252117,0.09576602,0.0022609741,0.00013103084,0.000016136999,0.00005656772,0.035151508],"genre_scores_gemma":[0.9635048,0.000050926246,0.00001816895,0.03151658,0.0028163525,0.000005735656,0.000010029585,0.000016957301,0.0020604865],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978348,0.00035551292,0.00031276065,0.00005660215,0.00083689543,0.00060341787],"domain_scores_gemma":[0.9960697,0.00011907704,0.0001259777,0.000137128,0.00026957854,0.0032784918],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0018848131,0.00010793315,0.0002164152,0.00019776149,0.00078645354,0.000042291256,0.00012063698,0.00043272378,0.0049603055],"category_scores_gemma":[0.0017853113,0.00009186568,0.00013451687,0.0002465373,0.000042738116,0.00016733391,0.00001299383,0.0015498132,0.00070613925],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000048240104,0.00018740722,0.8061849,0.000016793778,0.00021563264,0.00021002945,0.00094313914,8.6622384e-7,0.0011751795,0.00020367774,0.1776407,0.013216876],"study_design_scores_gemma":[0.00047723606,0.00005610404,0.31436497,0.000042267602,0.000042763928,0.0015299245,0.0003688067,0.000010749408,0.000022075796,0.000021759834,0.68298626,0.00007709042],"about_ca_topic_score_codex":0.0009789626,"about_ca_topic_score_gemma":0.0045067277,"teacher_disagreement_score":0.5053455,"about_ca_system_score_codex":0.0010661342,"about_ca_system_score_gemma":0.0018267601,"threshold_uncertainty_score":0.99594927},"labels":[],"label_agreement":null},{"id":"W2044704048","doi":"10.1016/j.vaccine.2015.04.005","title":"Effectiveness of three pneumococcal conjugate vaccines to prevent invasive pneumococcal disease in Quebec, Canada","year":2015,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":119,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Institut National de Santé Publique du Québec; Université Laval; Centre hospitalier universitaire de Québec","funders":"Ministère de la Santé et des Services sociaux","keywords":"Pneumococcal conjugate vaccine; Pneumococcal disease; Medicine; Pediatrics; Serotype; Logistic regression; Internal medicine; Streptococcus pneumoniae; Immunology; Biology","score_opus":0.01566316805618366,"score_gpt":0.26220098682056386,"score_spread":0.2465378187643802,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2044704048","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99477834,0.00017273639,0.000038210914,0.0028739597,0.0004338516,0.0014192852,0.000029752444,0.000043389457,0.00021045384],"genre_scores_gemma":[0.9990779,0.000010816868,0.000008036677,0.00027174805,0.00012919703,0.00018047963,0.000026919488,0.000033040982,0.0002618343],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99824643,0.00018138088,0.0004849425,0.00039156497,0.00032209267,0.0003735686],"domain_scores_gemma":[0.9980179,0.00026075702,0.00010090568,0.0004607747,0.0002984516,0.0008612295],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033933154,0.0002693825,0.0006281667,0.00025871096,0.000042394036,0.00001111751,0.00014886734,0.00008127477,0.000044164794],"category_scores_gemma":[0.0007022781,0.00021882053,0.000099480836,0.00058397313,0.000011799698,0.00010194691,0.00010941174,0.00022315794,0.000023892077],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011233803,0.0006401934,0.8039456,0.0005641871,0.00009195174,0.00038384675,0.00010165663,0.0011098305,0.19112659,0.00010072111,0.0005457028,0.00026632563],"study_design_scores_gemma":[0.0028978826,0.00040740034,0.97731066,0.00058619975,0.00010680775,0.000019447942,0.000057521454,0.00006199406,0.0151838,0.0001317821,0.0030064618,0.00023006642],"about_ca_topic_score_codex":0.3913915,"about_ca_topic_score_gemma":0.92516124,"teacher_disagreement_score":0.5337697,"about_ca_system_score_codex":0.00051450974,"about_ca_system_score_gemma":0.0026491922,"threshold_uncertainty_score":0.8923242},"labels":[],"label_agreement":null},{"id":"W2045897361","doi":"10.1186/cc5187","title":"Beneficial effects of antiplatelet drugs in patients with community-acquired pneumonia and in endotoxin shock in mice","year":2007,"lang":"en","type":"article","venue":"Critical Care","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; Bayer Canada","keywords":"Medicine; Community-acquired pneumonia; Pneumonia; Intensive care medicine; Shock (circulatory); Pharmacology; Internal medicine","score_opus":0.0075866244379983955,"score_gpt":0.272078625337973,"score_spread":0.2644920008999746,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045897361","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998957,0.00012211713,0.0000033940414,0.000077411874,0.00006656788,0.00036314185,0.000010221739,0.000012672659,0.0003874666],"genre_scores_gemma":[0.99971783,0.0000032876294,0.000022972084,0.0001980861,0.000017005576,0.0000101170135,0.000015923782,0.000013320826,0.0000014476817],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99905264,0.00011956747,0.00026842387,0.00013564031,0.00015554899,0.00026816997],"domain_scores_gemma":[0.9991559,0.00049552403,0.00001876532,0.00014013528,0.000090539164,0.00009916331],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016620762,0.00011698368,0.00030842744,0.00027045832,0.000045929013,0.0000060809975,0.000048737173,0.00012235992,0.0000029402715],"category_scores_gemma":[0.0002796177,0.00010177593,0.000023999099,0.00031953937,0.0001639421,0.00005844009,0.000038922473,0.00036073956,0.0000011475558],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030576493,0.00051764934,0.9690795,0.000934148,0.0000040063105,0.00014854505,0.0024438323,0.0000024148824,0.025412962,0.00006538075,6.412592e-7,0.0010851809],"study_design_scores_gemma":[0.0035599803,0.0007377279,0.9827345,0.0006277015,0.000019190997,0.000008316664,0.0016064177,0.000006430766,0.010553072,0.000022770833,0.000020335938,0.00010353005],"about_ca_topic_score_codex":0.00019651062,"about_ca_topic_score_gemma":0.0012300068,"teacher_disagreement_score":0.014859889,"about_ca_system_score_codex":0.00008735412,"about_ca_system_score_gemma":0.000037097754,"threshold_uncertainty_score":0.41503018},"labels":[],"label_agreement":null},{"id":"W2046554109","doi":"10.1371/journal.pone.0076197","title":"Serotyping of Streptococcus pneumoniae Based on Capsular Genes Polymorphisms","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de Santé Publique du Québec; Université Laval","funders":"Canadian Institutes of Health Research; Université Laval; Pfizer","keywords":"Serotype; Streptococcus pneumoniae; Microbiology; Pneumolysin; Multiplex polymerase chain reaction; Biology; Typing; Virology; Polymerase chain reaction; Gene; Antibiotics; Genetics","score_opus":0.03912533574825392,"score_gpt":0.23447628974357615,"score_spread":0.19535095399532224,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046554109","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944576,0.00007251185,0.00003363076,0.0019166962,0.000042659212,0.00070346025,0.000009194425,0.00008966571,0.0026745761],"genre_scores_gemma":[0.99813104,0.0000135568835,0.00015638252,0.0009404779,0.0001191993,0.0001407734,0.000007955217,0.000025042791,0.0004656008],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990352,0.000035609515,0.0002361721,0.00018943335,0.00029825547,0.0002053311],"domain_scores_gemma":[0.9991916,0.000045981542,0.00008538311,0.00038625873,0.00014794024,0.00014283681],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000059607042,0.00013143163,0.00029942967,0.000165981,0.00007149828,0.0000098492665,0.00006485576,0.00009106115,0.00062949816],"category_scores_gemma":[0.000062502375,0.000109126064,0.00009056559,0.00018019581,0.00006116211,0.00005457911,0.000016502869,0.0001589913,0.00029121537],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000072313715,0.0013261256,0.107531615,0.00011423212,0.00011586829,0.000007720085,0.000028802517,0.00003431668,0.8899936,0.000028734463,0.000044249482,0.00076750654],"study_design_scores_gemma":[0.0012116678,0.000993034,0.23904672,0.00075332634,0.0002991572,0.0000035303494,0.00003954984,0.004428369,0.7525739,0.000046819747,0.0003919184,0.00021200105],"about_ca_topic_score_codex":0.000057134817,"about_ca_topic_score_gemma":0.000003318675,"teacher_disagreement_score":0.1374197,"about_ca_system_score_codex":0.000037407328,"about_ca_system_score_gemma":0.00008059942,"threshold_uncertainty_score":0.6892563},"labels":[],"label_agreement":null},{"id":"W2046762367","doi":"10.1128/aac.48.9.3305-3311.2004","title":"In Vitro Antimicrobial Susceptibilities of <i>Streptococcus pneumoniae</i> Clinical Isolates Obtained in Canada in 2002","year":2004,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Sunnybrook Health Science Centre; Calgary Laboratory Services; Mount Sinai Hospital; Health Sciences Centre; Université de Montréal; Hôpital Maisonneuve-Rosemont; University of Toronto","funders":"Centre Hospitalier Universitaire de Québec; McMaster University; Hospital for Sick Children; Hamilton Health Sciences; Université Laval","keywords":"Broth microdilution; Streptococcus pneumoniae; Telithromycin; Microbiology; Ceftriaxone; Penicillin; Amoxicillin; Minimum inhibitory concentration; Ciprofloxacin; Antimicrobial; Biology; Antibiotics; Medicine","score_opus":0.013437143257705182,"score_gpt":0.2745533498458933,"score_spread":0.2611162065881881,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046762367","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9925424,0.000018441404,0.000002402218,0.0064748703,0.00021630528,0.00047566844,0.00003230859,0.000011140493,0.00022649408],"genre_scores_gemma":[0.98727816,0.00073758716,0.000040159586,0.011715494,0.00007130319,0.000007156038,0.000009445579,0.000024870918,0.00011581946],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99828714,0.000057802103,0.0008017988,0.00036614493,0.000097170414,0.00038994398],"domain_scores_gemma":[0.99949163,0.000039931165,0.00012413484,0.0002065425,0.000041197487,0.000096570024],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018533405,0.00022376284,0.00063064595,0.00020064999,0.000034748573,0.000011991578,0.00009261763,0.00015278276,0.00008185704],"category_scores_gemma":[0.000022139513,0.00020332051,0.000101267564,0.0003466674,0.00015464736,0.00009706057,0.000029101879,0.00033817784,0.0000034196837],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002333189,0.0006760883,0.599373,0.000095708856,0.000029223549,0.00010783475,0.00035455494,0.00006119753,0.39640328,0.000004562654,0.0018225248,0.00083873776],"study_design_scores_gemma":[0.016055148,0.00031623352,0.81331843,0.00051703106,0.000024831328,0.00007114595,0.0002902709,0.000058089867,0.15841438,0.000043746757,0.010442998,0.00044766846],"about_ca_topic_score_codex":0.22054186,"about_ca_topic_score_gemma":0.39943135,"teacher_disagreement_score":0.2379889,"about_ca_system_score_codex":0.00024438233,"about_ca_system_score_gemma":0.0008250281,"threshold_uncertainty_score":0.829117},"labels":[],"label_agreement":null},{"id":"W2047478690","doi":"10.1097/inf.0b013e318260552d","title":"Bacterial Meningitis and Pneumococcal Serotype Distribution in Children in Cameroon","year":2012,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Streptococcus pneumoniae; Serotype; Pneumococcal conjugate vaccine; Meningitis; Medicine; Virology; Polymerase chain reaction; Conjugate vaccine; Bacterial meningitis; Microbiology; Pneumococcal infections; Conjugate; Pathogen; Immunology; Biology; Pediatrics; Antibiotics","score_opus":0.00640835856064541,"score_gpt":0.2404935325802862,"score_spread":0.23408517401964077,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047478690","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979936,0.00043635187,0.000025791403,0.00049775135,0.000506395,0.00033873421,0.000024085379,0.000030649717,0.00014667289],"genre_scores_gemma":[0.9967336,0.00059848715,0.00000152788,0.000101222504,0.0024908602,0.000023353647,0.000017710732,0.000015270625,0.000017963954],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99881643,0.00017655702,0.0003088736,0.00011950785,0.00017656281,0.00040205664],"domain_scores_gemma":[0.9992611,0.00006362862,0.00011190685,0.00012452791,0.000039023173,0.00039980462],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044916183,0.00014884373,0.00019677242,0.00021846293,0.00022412544,0.000046117268,0.000047810594,0.00007825464,0.00008511488],"category_scores_gemma":[0.00019111503,0.00010458179,0.000082338294,0.0003659179,0.00005196839,0.00021700452,0.000038934828,0.0005840591,0.000023045213],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000079208185,0.00029340698,0.99826056,0.00001294104,0.000020052606,0.000021544192,0.00010958284,0.00002324865,0.00047563322,0.000025177722,0.00011050144,0.0005681392],"study_design_scores_gemma":[0.001533822,0.0001150797,0.9954145,0.000016764088,0.00020936404,0.0021712254,0.000020062165,0.000022578879,0.000008168629,0.00011474976,0.00025734876,0.00011634201],"about_ca_topic_score_codex":0.00005578315,"about_ca_topic_score_gemma":0.000017048955,"teacher_disagreement_score":0.0028460694,"about_ca_system_score_codex":0.00020368,"about_ca_system_score_gemma":0.00016448004,"threshold_uncertainty_score":0.4264722},"labels":[],"label_agreement":null},{"id":"W2047482161","doi":"10.1016/j.jinf.2011.06.009","title":"Immunomodulatory agents in the treatment of community-acquired pneumonia: A systematic review","year":2011,"lang":"en","type":"review","venue":"Journal of Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Ottawa Hospital","funders":"","keywords":"Pneumonia; Intensive care medicine; Medicine; Community-acquired pneumonia; Internal medicine","score_opus":0.1470846680460733,"score_gpt":0.3971686032251053,"score_spread":0.25008393517903194,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047482161","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0021686594,0.99502933,0.0000066007387,0.000029661976,0.0004737858,0.0019752858,0.0000039281563,0.0000084900275,0.0003042352],"genre_scores_gemma":[0.0013098175,0.9982321,0.0000023909754,0.00014818509,0.00011122366,0.00012287617,0.0000070296865,0.000027240352,0.00003908469],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.9953725,0.0021058703,0.0020448735,0.0000746691,0.00025710437,0.00014500231],"domain_scores_gemma":[0.9963354,0.00025453427,0.0025039357,0.00061271625,0.00022978749,0.00006366234],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015604275,0.00031639324,0.0032591547,0.00055906025,0.0001081777,0.000011173218,0.0001600018,0.00021583309,0.000025131509],"category_scores_gemma":[0.00021417844,0.00015703772,0.0015319601,0.0005464786,0.000061602084,0.000092976225,0.000013578791,0.0005702297,0.00001975217],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009081765,0.0023103538,0.00018947072,0.95297223,0.001220462,0.00006047623,0.00071676,4.7304965e-7,0.000012240805,0.0000088986335,0.00010424029,0.042395294],"study_design_scores_gemma":[0.0004953849,0.0029038093,0.0015965003,0.63434434,0.011406752,0.005405702,0.00003832576,2.8323905e-7,0.0000014503693,0.000007725497,0.34367603,0.00012371725],"about_ca_topic_score_codex":0.000078341596,"about_ca_topic_score_gemma":0.000015459158,"teacher_disagreement_score":0.34357178,"about_ca_system_score_codex":0.00053575647,"about_ca_system_score_gemma":0.00030257882,"threshold_uncertainty_score":0.6403813},"labels":[],"label_agreement":null},{"id":"W2047696758","doi":"10.1053/srin.2001.25624","title":"Drug-resistant Streptococcus pneumoniae infections: Clinical importance, drug treatment, and prevention☆","year":2001,"lang":"en","type":"review","venue":"Seminars in Respiratory Infections","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Medicine; Streptococcus pneumoniae; Meningitis; Pneumococcal infections; Antibiotics; Conjugate vaccine; Immunosuppression; Drug resistance; Immunology; Intensive care medicine; Empiric therapy; Pediatrics; Antibody; Microbiology; Immunization; Biology","score_opus":0.07188617569901035,"score_gpt":0.4161853184387748,"score_spread":0.3442991427397645,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047696758","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.013013708,0.9714911,0.000014393412,0.00013127532,0.001546542,0.0049061533,0.00018089604,0.00052394514,0.008192007],"genre_scores_gemma":[0.00025114082,0.9899366,0.000018670109,0.00030234785,0.00096699287,0.0030887688,0.00013567497,0.00020652442,0.0050933105],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99276435,0.0012103305,0.0030942447,0.0016286707,0.00037029947,0.0009320884],"domain_scores_gemma":[0.9953022,0.0010191055,0.0011419903,0.001539876,0.00027855157,0.0007182507],"candidate_categories":["metaepi_narrow"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.0012240816,0.0012997752,0.0035014101,0.0020938232,0.00076911226,0.00013536113,0.00022074487,0.0010583221,0.00033819964],"category_scores_gemma":[0.0006886672,0.0011108972,0.0018430911,0.0027821315,0.0006569606,0.00032592207,0.00016623257,0.002072927,0.00022901731],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016302849,0.0041067214,0.23882376,0.003948565,0.0010910622,0.00052692206,0.00011365157,0.0000060658454,0.000016105436,0.00017561953,0.0057393,0.74543595],"study_design_scores_gemma":[0.0016751684,0.0017722545,0.0028338865,0.010856966,0.0026575646,0.00049699825,0.00012222395,0.0000023199532,0.0000015276964,0.00012934092,0.9785693,0.00088245026],"about_ca_topic_score_codex":0.00006766815,"about_ca_topic_score_gemma":0.0024870434,"teacher_disagreement_score":0.97283,"about_ca_system_score_codex":0.0013829925,"about_ca_system_score_gemma":0.0019660806,"threshold_uncertainty_score":0.9999754},"labels":[],"label_agreement":null},{"id":"W2047747350","doi":"10.1097/md.0b013e31821a5a76","title":"Factors Predicting Mortality in Invasive Pneumococcal Disease in Adults in Alberta","year":2011,"lang":"en","type":"article","venue":"Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Pneumococcal disease; Pneumococcal infections; MEDLINE; Streptococcus pneumoniae; Microbiology","score_opus":0.05587687944796091,"score_gpt":0.2964454387528894,"score_spread":0.24056855930492851,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047747350","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9934404,0.00006713095,0.0000021367873,0.0011918156,0.00027145783,0.0005683017,0.0000041849194,0.000031659314,0.0044228975],"genre_scores_gemma":[0.9992413,0.000041587937,0.0000019706324,0.00038952345,0.00012822052,0.00006347323,0.000025372952,0.000018585091,0.00008997985],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983953,0.00009821203,0.0005633037,0.00035169895,0.00023579232,0.00035564942],"domain_scores_gemma":[0.9990516,0.00019856589,0.000080967846,0.000312705,0.00003533358,0.0003208425],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028728024,0.00020386439,0.00045815785,0.0005183134,0.000028402344,0.0000019244358,0.00009189406,0.00010948578,0.00025639386],"category_scores_gemma":[0.0015489643,0.00014573974,0.00005279167,0.00063312025,0.00016219539,0.00010330714,0.000039768907,0.00046280574,0.000013180568],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001141472,0.0004211337,0.99077547,0.00016113439,0.000012108297,0.0004507109,0.006262836,0.000006378287,0.0016229864,0.000040728097,0.000011161052,0.000121200486],"study_design_scores_gemma":[0.0029572537,0.00028410894,0.9934625,0.0016704722,0.00003691484,0.0000055752716,0.0008857141,0.0001652875,0.00016881761,0.000121174526,0.0001191781,0.00012299858],"about_ca_topic_score_codex":0.017665254,"about_ca_topic_score_gemma":0.048673756,"teacher_disagreement_score":0.031008504,"about_ca_system_score_codex":0.0001498068,"about_ca_system_score_gemma":0.00016837342,"threshold_uncertainty_score":0.9888762},"labels":[],"label_agreement":null},{"id":"W2048183220","doi":"10.1136/emj.2003.011833","title":"Patients with community acquired pneumonia discharged from the emergency department according to a clinical practice guideline","year":2004,"lang":"en","type":"article","venue":"Emergency Medicine Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen Elizabeth II Health Sciences Centre","funders":"","keywords":"Medicine; Guideline; Emergency department; Community-acquired pneumonia; Pneumonia; Pneumonia severity index; Coroner; Emergency medicine; Medical record; Clinical Practice; Retrospective cohort study; Internal medicine; Poison control; Injury prevention; Family medicine","score_opus":0.05512153113982852,"score_gpt":0.400075926614071,"score_spread":0.34495439547424245,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048183220","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.928285,0.00039636155,0.00432412,0.056224793,0.006580151,0.00080612104,0.000028591681,0.00007181527,0.0032830345],"genre_scores_gemma":[0.9865403,0.0011788751,0.0010586958,0.004083728,0.006001418,0.000053083666,0.00013772056,0.00008230738,0.00086383073],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9951337,0.0007439852,0.0021714645,0.0003171856,0.0011086351,0.0005250345],"domain_scores_gemma":[0.9961287,0.000245825,0.00075037475,0.0008036488,0.0012184798,0.00085297873],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0025021927,0.00037633028,0.0006375217,0.00014549254,0.0013358867,0.000013523045,0.00042767095,0.0001265922,0.0047373385],"category_scores_gemma":[0.004070732,0.00019523807,0.00025397,0.0007227139,0.00012788746,0.0003222199,0.00013413093,0.0014395267,0.00011637176],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006600706,0.002104243,0.83579,0.000016557937,0.0008006366,0.000024571835,0.0022325094,0.00010449677,0.002893414,0.000024398661,0.15379919,0.0015499092],"study_design_scores_gemma":[0.0046081026,0.003284193,0.61904955,0.00033932776,0.0008737641,0.00015583193,0.002933839,0.000006251796,0.000022757971,0.00020890817,0.36827645,0.00024100929],"about_ca_topic_score_codex":0.00049479766,"about_ca_topic_score_gemma":0.00025020516,"teacher_disagreement_score":0.21674044,"about_ca_system_score_codex":0.0002004018,"about_ca_system_score_gemma":0.00031088892,"threshold_uncertainty_score":0.99996424},"labels":[],"label_agreement":null},{"id":"W2048228480","doi":"10.1371/journal.pone.0007255","title":"Population-Based Surveillance for Invasive Pneumococcal Disease in Homeless Adults in Toronto","year":2009,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Toronto Public Health; St. Michael's Hospital; Mount Sinai Hospital","funders":"Bayer","keywords":"Medicine; Streptococcus pneumoniae; Population; Pneumococcal infections; Pneumococcal pneumonia; Pneumonia; Young adult; Pneumococcal conjugate vaccine; Internal medicine; Incidence (geometry); Pediatrics; Environmental health; Biology; Antibiotics","score_opus":0.023091798019913883,"score_gpt":0.2694348706889326,"score_spread":0.24634307266901875,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048228480","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99707305,0.000118142125,0.000010155192,0.0016440476,0.000029173276,0.000866895,0.000031940068,0.000043523127,0.0001830459],"genre_scores_gemma":[0.9989304,0.000024027338,0.00005495177,0.00061725196,0.00009575828,0.00014072048,0.00009175784,0.000011294315,0.000033863886],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99916756,0.000037749225,0.00022991905,0.00020794326,0.00015219387,0.0002046085],"domain_scores_gemma":[0.9994323,0.00012640162,0.000044355686,0.00018391944,0.00006992701,0.0001430616],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008667345,0.00010365455,0.00030025686,0.00009009113,0.000033584794,0.00000747182,0.000044489032,0.00006123876,0.000030917592],"category_scores_gemma":[0.00035885142,0.000098092045,0.000052718417,0.00014239787,0.000011737776,0.00007316434,0.0000046086416,0.0000891678,0.0000055905234],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037008815,0.002532973,0.97933054,0.00019671141,0.000011932434,0.000023467213,0.000060575683,0.0000657119,0.016968127,0.000046856316,0.0000037160626,0.00038927753],"study_design_scores_gemma":[0.0024418512,0.00028286214,0.9944951,0.00052449433,0.000020190302,2.670855e-7,0.000029149065,0.0013347691,0.000672596,0.000074130374,0.000011588445,0.00011300491],"about_ca_topic_score_codex":0.00056259637,"about_ca_topic_score_gemma":0.014904815,"teacher_disagreement_score":0.01629553,"about_ca_system_score_codex":0.00032685444,"about_ca_system_score_gemma":0.00012649188,"threshold_uncertainty_score":0.8317237},"labels":[],"label_agreement":null},{"id":"W2048754396","doi":"10.2165/00151829-200403050-00006","title":"Comparative Efficacies and Tolerabilities of Intravenous Azithromycin Plus Ceftriaxone and Intravenous Levofloxacin with Step-Down Oral Therapy for Hospitalized Patients with Moderate to Severe Community-Acquired Pneumonia","year":2004,"lang":"en","type":"article","venue":"Treatments in Respiratory Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen Elizabeth II Health Sciences Centre; Regina General Hospital; Juravinski Hospital","funders":"Pfizer; Bristol-Myers Squibb","keywords":"Medicine; Azithromycin; Levofloxacin; Ceftriaxone; Community-acquired pneumonia; Internal medicine; Pneumonia; Regimen; Tolerability; Cefuroxime; Surgery; Antibiotics; Adverse effect","score_opus":0.042173874866778094,"score_gpt":0.30665481629047964,"score_spread":0.26448094142370154,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048754396","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945413,0.0004739742,0.0002940803,0.0004807864,0.00006102352,0.0038378104,0.00009122773,0.000058411886,0.0001614054],"genre_scores_gemma":[0.99812865,0.000072488285,0.0005573508,0.00068959023,0.00003913714,0.00036883648,0.000047140238,0.000049011334,0.00004780818],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9979049,0.00025397303,0.0006098708,0.00043978108,0.0003708925,0.0004205882],"domain_scores_gemma":[0.99844277,0.00025199837,0.00021685794,0.0004712192,0.0003191958,0.00029793277],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00031172027,0.00050359446,0.0014580919,0.00037490553,0.0003278502,0.000019157003,0.000100837075,0.0001365624,0.000012587278],"category_scores_gemma":[0.00006520102,0.000311479,0.00004276538,0.00041035452,0.0008863657,0.00013796569,0.00004000738,0.00024689068,0.0000010364648],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0748519,0.017038498,0.62792695,0.0019365519,0.0052547837,0.00032441097,0.1803877,0.005598562,0.05965036,0.00063679594,0.00014382182,0.026249638],"study_design_scores_gemma":[0.08238632,0.060672563,0.84589815,0.0013305229,0.00037486004,0.00004987814,0.005109923,0.00003085739,0.003048038,0.000111233014,0.00050591485,0.00048173132],"about_ca_topic_score_codex":0.00043014216,"about_ca_topic_score_gemma":0.00047465667,"teacher_disagreement_score":0.21797119,"about_ca_system_score_codex":0.00032698637,"about_ca_system_score_gemma":0.00027120262,"threshold_uncertainty_score":0.9999337},"labels":[],"label_agreement":null},{"id":"W2048809652","doi":"10.1093/jac/48.1.67","title":"Efficacy and safety of gemifloxacin in the treatment of community-acquired pneumonia: a randomized, double-blind comparison with trovafloxacin","year":2001,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fogarty International Center; Imperial College London; University of St Andrews; McMaster University","keywords":"Trovafloxacin; Gemifloxacin; Medicine; Streptococcus pneumoniae; Population; Pneumonia; Antibacterial agent; Community-acquired pneumonia; Internal medicine; Pharmacology; Microbiology; Antibiotics; Biology","score_opus":0.03625418480604465,"score_gpt":0.3202782791248537,"score_spread":0.28402409431880904,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048809652","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940206,0.0002151208,0.00018109805,0.0044280705,0.000054802305,0.0008295513,0.0000034384502,0.0000053339336,0.00026202571],"genre_scores_gemma":[0.99608934,0.003070409,0.00017700387,0.0005256142,0.00008350011,0.000004000497,0.0000029323573,0.000018479319,0.000028740094],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9982669,0.0003441505,0.00093313475,0.000080800295,0.00020694792,0.00016810895],"domain_scores_gemma":[0.99846375,0.00036803144,0.00067764975,0.00025689704,0.0001675151,0.00006613099],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00077522587,0.00019952096,0.0012849838,0.00026970226,0.00009547315,0.000014553039,0.00012857615,0.00010035446,0.000017385051],"category_scores_gemma":[0.000016685377,0.000105737825,0.00025087668,0.00035914633,0.00037519098,0.00007244606,0.0000067095607,0.00027304472,3.9462128e-7],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.5057638,0.005295035,0.014750074,0.000074270065,0.00069418654,0.000041364812,0.010423104,0.00019349727,0.45937678,0.00001527318,0.00012092193,0.0032516457],"study_design_scores_gemma":[0.87131345,0.006255289,0.023294164,0.00051970733,0.00055419176,0.0017915603,0.0010613018,0.000036039986,0.08776458,0.00001048091,0.0072286665,0.00017053566],"about_ca_topic_score_codex":0.00010256733,"about_ca_topic_score_gemma":0.000056850735,"teacher_disagreement_score":0.3716122,"about_ca_system_score_codex":0.000061101535,"about_ca_system_score_gemma":0.000112161586,"threshold_uncertainty_score":0.43118632},"labels":[],"label_agreement":null},{"id":"W2049506785","doi":"10.1186/1471-2164-10-642","title":"Genome-wide dissection of globally emergent multi-drug resistant serotype 19A Streptococcus pneumoniae","year":2009,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Ontario; University of Toronto; University Health Network; Mount Sinai Hospital","funders":"","keywords":"Biology; Multilocus sequence typing; Streptococcus pneumoniae; Serotype; Antibiotic resistance; Microbiology; Drug resistance; Genetics; Whole genome sequencing; Genome; Virology; Gene; Genotype; Antibiotics","score_opus":0.02318837148890285,"score_gpt":0.27839461083648287,"score_spread":0.25520623934758,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049506785","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956274,0.00025592296,0.0010266468,0.00051655463,0.00034260406,0.00075109705,0.00003726281,0.000102560785,0.0013399558],"genre_scores_gemma":[0.9975738,0.00014114301,0.00078410585,0.0003295997,0.0001675539,0.000019732606,0.000031925618,0.000026859238,0.0009252975],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99850595,0.00005515384,0.0005513967,0.00033908885,0.00022689722,0.00032152084],"domain_scores_gemma":[0.9988731,0.00002934342,0.00020732045,0.0005013233,0.00016890424,0.00021999664],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018934418,0.00022618176,0.00036195465,0.00014748285,0.00014820998,0.000017927583,0.00014266284,0.00011722573,0.00006732211],"category_scores_gemma":[0.00008704685,0.00020526606,0.00022960977,0.00028264636,0.000053658667,0.000057032932,0.000038207712,0.00019308549,0.000064252534],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014041037,0.00049383455,0.20715919,0.000083418716,0.00006602373,0.00001886373,0.0002970461,0.0008303992,0.7900653,0.000072350274,0.0001695592,0.00060360605],"study_design_scores_gemma":[0.0011096654,0.00051102194,0.96358967,0.000045414996,0.0001453807,0.000021347605,0.0002552601,0.00022534434,0.012114418,0.000094506715,0.021653853,0.00023409956],"about_ca_topic_score_codex":0.000034206285,"about_ca_topic_score_gemma":0.000489746,"teacher_disagreement_score":0.7779509,"about_ca_system_score_codex":0.0002714652,"about_ca_system_score_gemma":0.00028620881,"threshold_uncertainty_score":0.8370507},"labels":[],"label_agreement":null},{"id":"W2049652697","doi":"10.1186/1471-2318-10-1","title":"Predictors of health decline in older adults with pneumonia: findings from the Community Acquired Pneumonia Impact Study","year":2010,"lang":"en","type":"article","venue":"BMC Geriatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Gerontology; Community-acquired pneumonia; Psychological intervention; Pneumonia; Community health; Quality of life (healthcare); Rehabilitation; Social support; Family medicine; Public health; Physical therapy; Psychiatry; Nursing","score_opus":0.017939807414081046,"score_gpt":0.29772417816604885,"score_spread":0.2797843707519678,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049652697","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969084,0.00008897546,0.000041277955,0.00073560077,0.0004389755,0.0015769512,0.00009198723,0.000076864315,0.000040955576],"genre_scores_gemma":[0.9992263,0.000024954943,0.00010063252,0.00031814218,0.00017268857,0.000055608576,0.000043615826,0.00004013835,0.000017923194],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99765325,0.00051849714,0.000721355,0.00027189648,0.00044391074,0.0003910963],"domain_scores_gemma":[0.9976899,0.0006466897,0.000330828,0.00096896925,0.00016340333,0.00020017805],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013110053,0.00027820212,0.0006280723,0.00021717895,0.00034075323,0.000029137058,0.00032992547,0.0001663711,0.00004790268],"category_scores_gemma":[0.0004083915,0.0001636455,0.00014357176,0.000966241,0.00014521371,0.00009836978,0.00015047262,0.0009257196,0.000008403989],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023860087,0.0020072206,0.9849314,0.00006037047,0.00007659696,0.000008134657,0.006219377,0.000027076803,0.005988877,0.0000022383908,0.000098829936,0.00034125207],"study_design_scores_gemma":[0.0044012396,0.0020867395,0.98989147,0.000098460776,0.0001202926,0.000028832801,0.0028715013,0.00006781689,0.00009355978,0.000009805847,0.00018247771,0.00014780994],"about_ca_topic_score_codex":0.00758625,"about_ca_topic_score_gemma":0.018231628,"teacher_disagreement_score":0.010645378,"about_ca_system_score_codex":0.000101980186,"about_ca_system_score_gemma":0.0006633622,"threshold_uncertainty_score":0.9996831},"labels":[],"label_agreement":null},{"id":"W2049980833","doi":"10.1016/j.vaccine.2009.02.102","title":"How to compare the efficacy of conjugate vaccines to prevent acute otitis media?","year":2009,"lang":"en","type":"review","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke; McGill University Health Centre; Université Laval","funders":"","keywords":"Acute otitis media; Streptococcus pneumoniae; Medicine; Conjugate vaccine; Haemophilus influenzae; Pneumococcal conjugate vaccine; Vaccine efficacy; Vaccine trial; Clinical trial; Immunology; Otitis; Vaccination; Serotype; Internal medicine; Microbiology; Antigen; Immunization; Surgery; Biology; Antibiotics","score_opus":0.03865803191639809,"score_gpt":0.3425185415938613,"score_spread":0.3038605096774632,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049980833","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00094637676,0.9794062,0.000051200524,0.013932536,0.00090100087,0.0041048652,0.00020271984,0.00012756525,0.0003275318],"genre_scores_gemma":[0.00092460716,0.993933,0.00006821608,0.0015777827,0.001153875,0.00019256888,0.00012662733,0.000074552794,0.0019487495],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978852,0.0001516236,0.0007631979,0.0004744251,0.00032985315,0.00039565997],"domain_scores_gemma":[0.9976534,0.0003542726,0.00032214864,0.0010166377,0.00022611182,0.0004274167],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00021484951,0.00053256564,0.0024644411,0.0004219782,0.00011755751,0.000040467756,0.00040394216,0.00015047923,0.00012139786],"category_scores_gemma":[0.00037258933,0.00029326818,0.0006606877,0.001042871,0.0000089250325,0.000040872572,0.00013699367,0.00044258987,0.00020054955],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000053795295,0.0005687514,0.00010686656,0.0044343597,0.0011686676,0.00011784144,0.00022254547,0.0000065371196,0.00014700337,0.00008986896,0.05516077,0.937923],"study_design_scores_gemma":[0.0006871838,0.0005211851,0.0021424976,0.008779559,0.0031180202,0.00030587838,0.000015239147,5.66685e-7,0.00005554889,0.0000053688254,0.9840883,0.00028064346],"about_ca_topic_score_codex":0.000016354688,"about_ca_topic_score_gemma":0.0000867525,"teacher_disagreement_score":0.93764234,"about_ca_system_score_codex":0.00010117629,"about_ca_system_score_gemma":0.00024086569,"threshold_uncertainty_score":0.99995196},"labels":[],"label_agreement":null},{"id":"W2050224803","doi":"10.4161/hv.19820","title":"Antibody response to<i>Streptococcus pneumoniae</i>proteins PhtD, LytB, PcpA, PhtE and Ply after nasopharyngeal colonization and acute otitis media in children","year":2012,"lang":"en","type":"article","venue":"Human Vaccines & Immunotherapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"National Institute on Deafness and Other Communication Disorders; Sanofi Pasteur; U.S. Public Health Service; National Institutes of Health","keywords":"Antibody; Streptococcus pneumoniae; Titer; Immunology; Acute otitis media; Antibody titer; Biology; Otitis; Antigen; Colonization; Subclass; Streptococcus; Medicine; Microbiology; Bacteria","score_opus":0.010476784884769748,"score_gpt":0.2931769518997174,"score_spread":0.2827001670149476,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050224803","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947757,0.0025644316,0.000050683557,0.0009325488,0.00020602287,0.0012536116,0.00005072003,0.00010266301,0.00006359256],"genre_scores_gemma":[0.9965697,0.00049881253,0.00007349655,0.002010973,0.0003018973,0.00015084866,0.00007158486,0.000079377794,0.00024331798],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982379,0.00016999866,0.00046743255,0.0003701449,0.0002160568,0.0005384825],"domain_scores_gemma":[0.99902487,0.00009267571,0.00011769864,0.00041510115,0.000099974706,0.00024965647],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00035056178,0.0003540947,0.0004607103,0.00041380152,0.00024430463,0.000073181116,0.00010203042,0.00021119305,0.00010955748],"category_scores_gemma":[0.00003894319,0.00032311887,0.00007164215,0.00040195687,0.000091314876,0.00027879886,0.000097284414,0.000334406,0.000032704596],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043056766,0.0002071613,0.6694348,0.000020837315,0.00015364359,0.000018477196,0.0017981256,7.91078e-7,0.32689163,0.00002190744,0.000013678014,0.0010083596],"study_design_scores_gemma":[0.003261897,0.0005950059,0.9873958,0.00012655665,0.00023708219,0.00030538204,0.000066021275,0.00001176545,0.002608017,0.000025579182,0.005033618,0.00033327533],"about_ca_topic_score_codex":0.00004113816,"about_ca_topic_score_gemma":0.000105096035,"teacher_disagreement_score":0.32428363,"about_ca_system_score_codex":0.000091930364,"about_ca_system_score_gemma":0.000064913336,"threshold_uncertainty_score":0.9999221},"labels":[],"label_agreement":null},{"id":"W2050531903","doi":"10.1016/j.bmcl.2008.10.109","title":"Synthesis of 3,6-bicyclolides: A novel class of macrolide antibiotics","year":2008,"lang":"en","type":"article","venue":"Bioorganic & Medicinal Chemistry Letters","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ryerson University","keywords":"Chemistry; Bicyclic molecule; Erythromycin; Antibiotics; In vivo; Oxime; Broad spectrum; Macrolide Antibiotics; Ketolide; Antibacterial agent; Chemical synthesis; In vitro; Stereochemistry; Bacteria; Microbiology; Combinatorial chemistry; Biochemistry; Biology","score_opus":0.017714680652669255,"score_gpt":0.2418264447791338,"score_spread":0.22411176412646452,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050531903","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9930639,0.00009004217,0.0002517794,0.0048503047,0.00011687381,0.00012875871,0.000031908574,0.000049671962,0.0014167107],"genre_scores_gemma":[0.99802583,0.000108499466,0.00019050519,0.0012271579,0.00030214083,0.000001508677,0.0000076041483,0.000031641874,0.00010512676],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99842024,0.000015737227,0.000558307,0.00026423286,0.00045243246,0.0002890549],"domain_scores_gemma":[0.9987997,0.00017182723,0.00026170028,0.00043910637,0.00012361864,0.00020408022],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013490113,0.0002191181,0.0005826765,0.00008443644,0.000070793416,0.0000019272031,0.00016327263,0.00016819316,0.00022786009],"category_scores_gemma":[0.000592305,0.00018520249,0.00019192863,0.00036563963,0.00064959965,0.000032149215,0.00003966271,0.00027307105,0.000012944889],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005107126,0.0002595481,0.023707177,0.00058803096,0.00015908825,0.00009603473,0.00016490444,0.0000021846708,0.9732991,0.000003060011,0.0015717183,0.00009811021],"study_design_scores_gemma":[0.0009081165,0.000054213207,0.018821672,0.00039056852,0.0002828466,0.0014615955,0.00022394807,0.00001581282,0.9755057,0.0000010444897,0.0021845095,0.00014999026],"about_ca_topic_score_codex":0.00003548135,"about_ca_topic_score_gemma":6.270874e-7,"teacher_disagreement_score":0.0049618655,"about_ca_system_score_codex":0.000084453335,"about_ca_system_score_gemma":0.0002394736,"threshold_uncertainty_score":0.7552338},"labels":[],"label_agreement":null},{"id":"W2050937889","doi":"10.1007/s11908-008-0036-5","title":"The value of prognostic indices for pneumonia","year":2008,"lang":"en","type":"article","venue":"Current Infectious Disease Reports","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Alberta","funders":"","keywords":"Pneumonia severity index; Medicine; Pneumonia; Intensive care medicine; Community-acquired pneumonia; Confusion; Clinical judgment; Emergency medicine; Severity of illness; Index (typography); Internal medicine","score_opus":0.024155821691508414,"score_gpt":0.30677886442031754,"score_spread":0.2826230427288091,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050937889","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933349,0.0022622815,0.0001383551,0.00031317113,0.0018716257,0.001221762,0.000014872158,0.00014158487,0.00070146064],"genre_scores_gemma":[0.9983813,0.0006585885,0.0000034296056,0.000060613762,0.00027821987,0.00039136814,0.00001774137,0.000022545939,0.00018620184],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985855,0.000041500487,0.0004980475,0.0002596709,0.00032479,0.00029048],"domain_scores_gemma":[0.99831086,0.0002637913,0.00040879063,0.00041546405,0.00029161305,0.00030945666],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000230749,0.00016060538,0.00024921008,0.00010884068,0.00053476356,0.000014749541,0.000043652966,0.0000534926,0.00000964623],"category_scores_gemma":[0.0012188079,0.000106693384,0.0003090046,0.0002331325,0.00016259121,0.00006117867,0.00002935877,0.00016799555,0.000008158066],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003094256,0.00061480445,0.99391365,0.00030782213,0.000115179304,0.00018446664,0.000050463874,0.00003609916,0.000841245,0.00017385736,0.0012107299,0.0025207303],"study_design_scores_gemma":[0.00048597832,0.0002738784,0.8115059,0.00018003592,0.00047887905,0.0013142461,0.000008263466,0.000078186364,0.00030397248,0.0007040003,0.18451273,0.00015394081],"about_ca_topic_score_codex":0.000006659096,"about_ca_topic_score_gemma":0.0000029662751,"teacher_disagreement_score":0.183302,"about_ca_system_score_codex":0.000093869996,"about_ca_system_score_gemma":0.00061028096,"threshold_uncertainty_score":0.435083},"labels":[],"label_agreement":null},{"id":"W2051247706","doi":"10.1097/00003246-200106000-00035","title":"Open lung biopsy in children with respiratory failure","year":2001,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Medicine; Lung; Biopsy; Respiratory failure; Bronchoalveolar lavage; Lung biopsy; Surgery; Respiratory disease; Respiratory system; Complication; Intensive care unit; Radiology; Intensive care medicine; Internal medicine","score_opus":0.023216063610012827,"score_gpt":0.3466060909626332,"score_spread":0.32339002735262035,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051247706","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93957657,0.0014391339,0.00022773806,0.02316614,0.00017878249,0.00095992995,0.000009406347,0.00011924549,0.034323044],"genre_scores_gemma":[0.9928193,0.000012739878,0.000095513264,0.006194552,0.00053550565,0.000072161754,0.0000259741,0.00003274336,0.00021150043],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984943,0.00007592637,0.0003066811,0.00039867553,0.0003317138,0.00039268422],"domain_scores_gemma":[0.99882776,0.00009379587,0.000025573385,0.00042928208,0.00024170788,0.00038190963],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002041593,0.00020558889,0.0004484796,0.0002487815,0.00012690348,0.000024560091,0.00021118023,0.00014501764,0.0006314693],"category_scores_gemma":[0.0005056966,0.00013422707,0.000041435007,0.0006353759,0.0005251014,0.00013764996,0.00009371931,0.00047623832,0.000038142967],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008529343,0.00012148576,0.99037653,0.00008963187,0.00003323414,0.0007066169,0.0003212279,0.0000011791417,0.003745398,0.0015121399,0.0015624523,0.001444798],"study_design_scores_gemma":[0.005724902,0.0019324318,0.93500406,0.0008688489,0.00030473538,0.002632732,0.0029051942,0.000010690321,0.00018895094,0.000113668466,0.05001351,0.00030026733],"about_ca_topic_score_codex":0.000106316875,"about_ca_topic_score_gemma":0.0001104566,"teacher_disagreement_score":0.055372473,"about_ca_system_score_codex":0.00013002001,"about_ca_system_score_gemma":0.00018885298,"threshold_uncertainty_score":0.69141465},"labels":[],"label_agreement":null},{"id":"W2051650208","doi":"10.1016/j.jpeds.2014.07.015","title":"Variability in care for children hospitalized for pneumonia: no excuses this time","year":2014,"lang":"en","type":"article","venue":"The Journal of Pediatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumonia; Pediatrics; Regimen; Intensive care medicine; Quarter (Canadian coin); Health care; Bacterial pneumonia; Family medicine; Emergency medicine; Internal medicine","score_opus":0.006262647125966556,"score_gpt":0.2560360681910193,"score_spread":0.24977342106505276,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051650208","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940831,0.00024191514,0.0025860213,0.001261505,0.0004816934,0.00078876264,0.000038250375,0.000016924918,0.0005018275],"genre_scores_gemma":[0.99652624,0.00020161319,0.0005777431,0.00037424252,0.0021028458,0.000015348905,0.0000058686865,0.000023905677,0.00017216917],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998972,0.000141578,0.0004237534,0.00008812963,0.00018306322,0.00019148861],"domain_scores_gemma":[0.9979799,0.0009069271,0.00027761364,0.00020306035,0.00053870765,0.00009380857],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016773045,0.00011305045,0.00034156794,0.00013921218,0.00012229482,0.000011813548,0.00014771617,0.00010326312,0.000022445509],"category_scores_gemma":[0.002132632,0.00006790287,0.00021116312,0.00017501596,0.000042561773,0.00006835131,0.00002029696,0.00023631984,0.000013502888],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013410099,0.0009283458,0.95138204,0.0012444382,0.00012666773,0.0000054023194,0.003231793,0.00029723995,0.016093757,0.00020176318,0.01974322,0.0054043266],"study_design_scores_gemma":[0.0156437,0.008030671,0.919133,0.00012921989,0.003594937,0.0003992006,0.00020512714,0.0005256713,0.0008044721,0.0025694408,0.048386995,0.0005775697],"about_ca_topic_score_codex":0.0000074882373,"about_ca_topic_score_gemma":0.0000026198475,"teacher_disagreement_score":0.032249037,"about_ca_system_score_codex":0.00008839365,"about_ca_system_score_gemma":0.0002007156,"threshold_uncertainty_score":0.27689984},"labels":[],"label_agreement":null},{"id":"W2051757966","doi":"10.1016/j.vaccine.2012.08.017","title":"Invasive pneumococcal diseases in birth cohorts vaccinated with PCV-7 and/or PHiD-CV in the province of Quebec, Canada","year":2012,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":52,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Centre hospitalier universitaire de Québec; Université Laval; Institut National de Santé Publique du Québec","funders":"Ministère de la Santé et des Services sociaux","keywords":"Medicine; Pneumococcal disease; Pneumococcal infections; Pediatrics; Virology; Streptococcus pneumoniae; Biology; Microbiology","score_opus":0.00829647021895082,"score_gpt":0.23275688465812994,"score_spread":0.2244604144391791,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051757966","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996422,0.0003900286,0.0000019161487,0.0023081969,0.000056678917,0.0006392016,0.00001808993,0.000016448916,0.00014747526],"genre_scores_gemma":[0.9988132,0.00006130519,0.0000033881513,0.0006979165,0.00006812608,0.000046960486,0.000011557607,0.0000147007695,0.0002828415],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99907476,0.000079862846,0.0002492596,0.00015464744,0.00017081223,0.00027063294],"domain_scores_gemma":[0.99933374,0.00016914358,0.00008321805,0.00022941727,0.000048051144,0.00013640978],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010945584,0.00014405571,0.0003118735,0.00014313702,0.000044192293,0.0000065281215,0.00007233255,0.000046909543,0.00006114859],"category_scores_gemma":[0.0001376873,0.00007526689,0.000020450661,0.00044758644,0.000014207762,0.00010967932,0.000027583565,0.00018533604,0.0000011038934],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025680743,0.000356098,0.99392486,0.00015785801,0.000025853988,0.00024275406,0.00018166772,0.000012789429,0.0036914197,0.00003512387,0.0006200756,0.0004946674],"study_design_scores_gemma":[0.0017838354,0.00024313826,0.99248964,0.00016303739,0.00005655328,0.00012554547,0.0003500879,0.000014770584,0.0008524942,0.0000047025023,0.0038139196,0.0001022607],"about_ca_topic_score_codex":0.17957622,"about_ca_topic_score_gemma":0.9476486,"teacher_disagreement_score":0.76807237,"about_ca_system_score_codex":0.00011454947,"about_ca_system_score_gemma":0.000876608,"threshold_uncertainty_score":0.825887},"labels":[],"label_agreement":null},{"id":"W2051981329","doi":"10.1086/428056","title":"Challenges in the Management of Community-Acquired Pneumonia: The Role of Quinolones and Moxifloxacin","year":2005,"lang":"en","type":"review","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Thoracic Society","keywords":"Medicine; Community-acquired pneumonia; Moxifloxacin; Intensive care medicine; Pneumonia; Discontinuation; Drug; Pharmacology; Antibiotics; Internal medicine","score_opus":0.1844187544177413,"score_gpt":0.43992717146742033,"score_spread":0.255508417049679,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051981329","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.013550128,0.9816736,4.5240654e-7,0.00040325642,0.00014055651,0.0011397225,0.0000423268,0.000039574195,0.0030103875],"genre_scores_gemma":[0.1210462,0.87838423,7.849531e-7,0.00015663027,0.00015456742,0.00020271826,0.000015273066,0.000025016743,0.000014600516],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9965589,0.00159879,0.0011885305,0.00022939546,0.0002176464,0.00020675662],"domain_scores_gemma":[0.9964974,0.0018378858,0.0005160234,0.0009839537,0.00006585874,0.00009891242],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008937563,0.000306465,0.0016414168,0.00016320586,0.00015980948,0.0000128858655,0.00031321612,0.00027156828,0.000011165411],"category_scores_gemma":[0.00018687802,0.00015862759,0.0006989568,0.00032504523,0.0007316394,0.000039029415,0.00019670544,0.00068470073,0.0000085656],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000077007335,0.0019636,0.006216656,0.009373776,0.000646544,0.000012280427,0.00017577958,0.000001007363,7.233665e-7,0.0006818662,0.000024216992,0.9808959],"study_design_scores_gemma":[0.0006724909,0.0007803374,0.15384218,0.0071622757,0.004548743,0.00006283404,0.0011812705,0.0000019944966,3.0498842e-7,0.00051582174,0.831041,0.00019076467],"about_ca_topic_score_codex":0.00001994339,"about_ca_topic_score_gemma":0.00007457436,"teacher_disagreement_score":0.9807051,"about_ca_system_score_codex":0.000031743366,"about_ca_system_score_gemma":0.0001017983,"threshold_uncertainty_score":0.64686453},"labels":[],"label_agreement":null},{"id":"W2052171023","doi":"10.1016/j.respe.2014.06.041","title":"Prescription des antibiotiques avant et durant l’hospitalisation chez des enfants âgés de moins de 5 ans admis à l’hôpital pédiatrique universitaire de Rabat au Maroc pour pneumonie clinique grave","year":2014,"lang":"fr","type":"article","venue":"Revue d Épidémiologie et de Santé Publique","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Global Health Research","funders":"","keywords":"Medicine; Gynecology","score_opus":0.026131059219944727,"score_gpt":0.32148529006262,"score_spread":0.29535423084267526,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2052171023","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93127054,0.0022608174,0.046337094,0.013387874,0.0013855132,0.0012536995,0.00021575297,0.0006253305,0.003263355],"genre_scores_gemma":[0.9532506,0.036256377,0.003803443,0.0032883792,0.0016412458,0.000079251644,0.00021471047,0.00016119021,0.001304829],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.98881966,0.006128582,0.0011775699,0.0011316272,0.00027336797,0.0024691653],"domain_scores_gemma":[0.9950571,0.001509267,0.00071452535,0.00087044865,0.000608769,0.0012399014],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.007604022,0.00094811444,0.0012180615,0.0006486897,0.00068285764,0.00037178898,0.0006145037,0.001898856,0.00013313105],"category_scores_gemma":[0.007530092,0.00088908075,0.0007521226,0.0005605582,0.0010423464,0.0021464594,0.00025565576,0.0019483386,0.000056855635],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":true,"study_design_scores_codex":[0.00021283697,0.0010029711,0.87013817,0.0015332525,0.0004000337,0.0007684423,0.013708614,0.0015534264,0.08267818,0.008572209,0.0005573549,0.0188745],"study_design_scores_gemma":[0.0017766383,0.002592928,0.9354073,0.0034550352,0.0005878794,0.0025095388,0.0055128457,0.008312473,0.017256688,0.018529933,0.0029296451,0.001129123],"about_ca_topic_score_codex":0.0037796835,"about_ca_topic_score_gemma":0.0034054425,"teacher_disagreement_score":0.065421484,"about_ca_system_score_codex":0.005647856,"about_ca_system_score_gemma":0.00714066,"threshold_uncertainty_score":0.99939686},"labels":[],"label_agreement":null},{"id":"W2052296516","doi":"10.1016/j.vaccine.2013.09.049","title":"Pneumococcal vaccination programs and the burden of invasive pneumococcal disease in Ontario, Canada, 1995–2011","year":2013,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":74,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; Health Sciences Centre; Credit Valley Hospital; Lakeridge Health; Hospital for Sick Children; William Osler Health System; Trillium Health Centre; St Joseph's Health Centre; University of Toronto; Toronto East General Hospital; Sunnybrook Health Science Centre; St. Michael's Hospital; North York General Hospital; Mount Sinai Hospital","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Vaccination; Pneumococcal conjugate vaccine; Incidence (geometry); Herd immunity; Population; Pediatrics; Pneumococcal polysaccharide vaccine; Pneumococcal disease; Environmental health; Immunology; Streptococcus pneumoniae","score_opus":0.009813999822701579,"score_gpt":0.2162326535486324,"score_spread":0.2064186537259308,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2052296516","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9883028,0.00012101355,0.0000030031435,0.0094080325,0.00011937797,0.0013939491,0.0000027564504,0.000021055816,0.00062798505],"genre_scores_gemma":[0.9985204,0.000027831025,0.000008171647,0.0002329085,0.000101904065,0.00023412195,0.0000242218,0.000015137436,0.0008353052],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988811,0.00007237903,0.00037303902,0.00022771508,0.00020340056,0.00024239137],"domain_scores_gemma":[0.9991087,0.0001225342,0.00011069936,0.00028331313,0.00014588081,0.00022889924],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014342541,0.00016428664,0.00034087722,0.00011659266,0.00007731751,0.000017819859,0.0000900171,0.000064416505,0.0006132549],"category_scores_gemma":[0.00011805108,0.00010298162,0.000064862215,0.00017023429,0.000026383923,0.00010706548,0.000059581278,0.00029040794,0.000015519148],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002172686,0.00019081432,0.98028386,0.000099608485,0.00006470281,0.00004312852,0.00091981323,0.00005549339,0.0148675665,0.00017229521,0.00053775834,0.0025477002],"study_design_scores_gemma":[0.003616801,0.00015311627,0.9921016,0.00007946777,0.00008817287,0.000027933147,0.0002088666,0.00038874164,0.00022062834,0.00022954015,0.0027739222,0.00011121601],"about_ca_topic_score_codex":0.93204474,"about_ca_topic_score_gemma":0.9411631,"teacher_disagreement_score":0.014646938,"about_ca_system_score_codex":0.00020950679,"about_ca_system_score_gemma":0.0008669837,"threshold_uncertainty_score":0.6714711},"labels":[],"label_agreement":null},{"id":"W2052552936","doi":"10.1111/j.1574-695x.1997.tb01092.x","title":"Characterisation of an outer membrane protein of Moraxella catarrhalis","year":2006,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases; Wellcome Trust","keywords":"Moraxella catarrhalis; Moraxella (Branhamella) catarrhalis; Bacterial outer membrane; Biology; Microbiology; Moraxella; Neisseriaceae; Haemophilus influenzae; Neisseria meningitidis; Transferrin; Neisseria; Bacterial adhesin; Molecular mass; Antigen; Biochemistry; Bacteria; Gene; Escherichia coli; Immunology; Genetics; Enzyme","score_opus":0.007357230536047707,"score_gpt":0.24416694102516723,"score_spread":0.23680971048911953,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2052552936","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99657536,0.00023833742,0.00006294375,0.0019536384,0.0003671245,0.00032528295,0.00005564753,0.000043518085,0.00037813076],"genre_scores_gemma":[0.99851185,0.000029828625,0.00008872976,0.000409606,0.00017021448,0.000028611907,0.00045098175,0.000015422043,0.0002947402],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99858105,0.00020421344,0.0006156261,0.00025145587,0.00007921703,0.00026845772],"domain_scores_gemma":[0.99913865,0.000052192518,0.00024913746,0.00035265344,0.00013794076,0.000069423986],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002717404,0.00015171837,0.00055922254,0.0001939896,0.000044932527,0.000001551419,0.00015875875,0.000607598,0.00069891865],"category_scores_gemma":[0.00012921245,0.0001191173,0.00011247187,0.00014831108,0.0009204805,0.000042491727,0.00005271037,0.00034767133,0.0000377788],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000117700634,0.00048752004,0.0027598417,0.000060976618,0.00011140307,0.000041929816,0.0000961438,3.800437e-7,0.99371445,0.00022141497,0.00009096857,0.002297298],"study_design_scores_gemma":[0.00237862,0.001600366,0.06365384,0.00014398272,0.00009658983,0.0017665145,0.00006783495,0.000012418741,0.9012243,0.00010810283,0.028779529,0.00016791039],"about_ca_topic_score_codex":0.00061337015,"about_ca_topic_score_gemma":0.000079115176,"teacher_disagreement_score":0.09249013,"about_ca_system_score_codex":0.00003030016,"about_ca_system_score_gemma":0.00019890949,"threshold_uncertainty_score":0.7652669},"labels":[],"label_agreement":null},{"id":"W2052750576","doi":"10.1016/s1499-2671(09)33015-4","title":"Admission hypoglycaemia portends a substantially increased risk of mortality in patients with community- acquired pneumonia: population-based cohort study","year":2009,"lang":"en","type":"article","venue":"Canadian Journal of Diabetes","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Hypoglycemia; Cohort; Population; Cohort study; Emergency medicine; Intensive care medicine; Pediatrics; Internal medicine; Environmental health; Insulin","score_opus":0.010410818934748047,"score_gpt":0.24419574554226306,"score_spread":0.23378492660751501,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2052750576","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991958,0.00003178958,0.0000016096467,0.00009482239,0.000073954994,0.00046011189,0.0000508476,0.00000662743,0.0000844169],"genre_scores_gemma":[0.9996583,6.9474936e-7,0.00002212661,0.00023094447,0.000029070841,0.000002964123,0.000037897003,0.000015057422,0.000002967402],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99819124,0.0003987373,0.0006632011,0.00011151536,0.00035752545,0.00027779242],"domain_scores_gemma":[0.9978918,0.00009950247,0.00053531124,0.00033986586,0.00043967055,0.0006938543],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007841292,0.00016992829,0.00057369896,0.00064281886,0.00019520774,0.000017895132,0.00014141736,0.00009277574,0.000031543896],"category_scores_gemma":[0.0003570869,0.0001307414,0.00011060385,0.0004990489,0.00006341112,0.00010190862,0.0000038492535,0.00043602148,4.616365e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039209073,0.0007283333,0.99759394,0.000020693165,0.00017134543,0.000033345772,0.00014597861,0.00013267066,0.0007047938,9.585785e-7,0.000009545741,0.0004191908],"study_design_scores_gemma":[0.0034979398,0.002963648,0.99235684,0.00029494916,0.000454412,0.0000013377146,0.000111552006,0.000036891946,0.00012255678,0.000023665385,0.000012224293,0.00012399697],"about_ca_topic_score_codex":0.006979767,"about_ca_topic_score_gemma":0.03359307,"teacher_disagreement_score":0.026613303,"about_ca_system_score_codex":0.00023956287,"about_ca_system_score_gemma":0.0013396124,"threshold_uncertainty_score":0.99963284},"labels":[],"label_agreement":null},{"id":"W2052994565","doi":"10.1016/j.amjmed.2005.06.035","title":"Low-risk patients admitted with community-acquired pneumonia","year":2005,"lang":"en","type":"article","venue":"The American Journal of Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":63,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Fondation pour la Recherche Médicale; Pfizer Canada; Abbott Canada; Pfizer","keywords":"Medicine; Pneumonia; Chills; Population; Asthma; Emergency department; Community-acquired pneumonia; Cohort study; Obstructive lung disease; Respiratory disease; Cohort; Internal medicine; Surgery; Intensive care medicine; Lung; COPD","score_opus":0.010905326038275357,"score_gpt":0.2699250883434464,"score_spread":0.25901976230517104,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2052994565","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98098004,0.0000828218,0.00017984874,0.017824326,0.0001305562,0.00014893898,0.000003117568,0.000023942446,0.00062640966],"genre_scores_gemma":[0.9914189,0.00018845974,0.000111542635,0.0074039726,0.000746321,0.000002711158,0.0000030903223,0.000025384199,0.0000995914],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981647,0.0004897045,0.0005074055,0.00007681756,0.0005320365,0.0002293368],"domain_scores_gemma":[0.9976147,0.00028665707,0.000964141,0.00041962022,0.0004292298,0.00028569013],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008186558,0.00017307745,0.00060468557,0.00020188084,0.0002994896,0.000006383184,0.0002445035,0.000024486577,0.00006974885],"category_scores_gemma":[0.00027525297,0.00007886485,0.00009475497,0.0005407017,0.001214087,0.000083024606,0.000028113984,0.00079042366,0.000019370864],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032106242,0.0020390728,0.5821129,0.00006056748,0.0011474288,0.0001399233,0.007868665,0.0002701947,0.06359835,0.000019146297,0.0036473256,0.3358858],"study_design_scores_gemma":[0.007276617,0.020914488,0.93621105,0.00078326603,0.00081874,0.0016062972,0.0032327808,0.00005408709,0.0007064486,0.000027899225,0.028208533,0.00015976922],"about_ca_topic_score_codex":0.000081374186,"about_ca_topic_score_gemma":0.000022022074,"teacher_disagreement_score":0.35409817,"about_ca_system_score_codex":0.00008724917,"about_ca_system_score_gemma":0.00012840598,"threshold_uncertainty_score":0.44733542},"labels":[],"label_agreement":null},{"id":"W2053182404","doi":"10.1542/peds.113.3.e186","title":"Can We Predict Which Children With Clinically Suspected Pneumonia Will Have the Presence of Focal Infiltrates on Chest Radiographs?","year":2004,"lang":"en","type":"article","venue":"PEDIATRICS","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":127,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; McGill University; Montreal Children's Hospital; Children's Hospital of Western Ontario","funders":"","keywords":"Medicine; Crackles; Tachypnea; Confidence interval; Odds ratio; Pneumonia; Logistic regression; Receiver operating characteristic; Prospective cohort study; Chest radiograph; Predictive value of tests; Internal medicine; Tachycardia; Physical examination; Lung","score_opus":0.01115885516941986,"score_gpt":0.25588170289070633,"score_spread":0.24472284772128647,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2053182404","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98932564,0.00017076319,0.00009478467,0.008391598,0.00015812836,0.00070734485,0.00006677312,0.000118946016,0.00096603436],"genre_scores_gemma":[0.9975993,0.0011981435,0.000103305596,0.00032327007,0.000636784,0.00003433882,0.00002288812,0.000032514818,0.00004942165],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99826694,0.00007357592,0.00047395838,0.00033638524,0.00050745567,0.00034168136],"domain_scores_gemma":[0.9983548,0.00034429092,0.0002360261,0.00053583505,0.000303619,0.00022543958],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024791874,0.00023315604,0.00034749287,0.00023394062,0.00017612145,0.00002534699,0.0002197236,0.00017657415,0.000012822263],"category_scores_gemma":[0.00049952226,0.00013757085,0.00013748546,0.0012252359,0.00028493375,0.00007294405,0.00003742159,0.0006455396,0.0000070368237],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001243668,0.00044185785,0.9970143,0.000042508436,0.00010751321,0.000015500867,0.00037179314,0.00062310585,0.00066972093,0.00022272614,0.0001419109,0.00022468701],"study_design_scores_gemma":[0.0018654937,0.0031294618,0.9929731,0.00007013169,0.00043082194,0.00014407665,0.00008401116,0.00003498728,0.00038635806,0.00026849663,0.0004337127,0.00017933465],"about_ca_topic_score_codex":0.00019942306,"about_ca_topic_score_gemma":0.00033335548,"teacher_disagreement_score":0.008273706,"about_ca_system_score_codex":0.00005400516,"about_ca_system_score_gemma":0.00055478816,"threshold_uncertainty_score":0.56099766},"labels":[],"label_agreement":null},{"id":"W2053926722","doi":"10.1503/cmaj.100285","title":"Severe necrotizing pneumonia in a child with pandemic (H1N1) influenza","year":2010,"lang":"en","type":"article","venue":"Canadian Medical Association Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Queen Elizabeth II Health Sciences Centre","funders":"","keywords":"Medicine; Pneumonia; rhinorrhea; Acute respiratory distress; Emergency department; Pandemic; Respiratory distress; Asthma; Pediatrics; Girl; Coronavirus disease 2019 (COVID-19); Intensive care medicine; Emergency medicine; Internal medicine; Immunology; Surgery; Lung; Infectious disease (medical specialty); Disease","score_opus":0.006842768625810074,"score_gpt":0.24596705513624464,"score_spread":0.23912428651043457,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2053926722","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9681821,0.000029009696,0.0000073357537,0.022920491,0.00053099374,0.0001404338,0.0000058542723,0.000029568653,0.0081542535],"genre_scores_gemma":[0.979153,0.000026840102,0.000032779702,0.019495323,0.0010692973,0.000009258208,0.000002678831,0.000019728408,0.00019110534],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99811745,0.000073749026,0.00036978043,0.0001510548,0.0007906784,0.0004972779],"domain_scores_gemma":[0.9976907,0.00008269135,0.00015191622,0.00011583952,0.00022241868,0.0017364421],"candidate_categories":["research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009669228,0.00012915912,0.00024956677,0.00035248746,0.0003043222,0.000060420603,0.000090736445,0.00047503458,0.0013569331],"category_scores_gemma":[0.0012048887,0.00010089748,0.00007448241,0.0003929523,0.000049235794,0.00013020066,0.000008599223,0.0031782365,0.00010427195],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008576575,0.000033741155,0.9896251,0.0000070383235,0.000057246423,0.0016605014,0.00020771672,0.0000065620907,0.0007466289,0.000048868907,0.001416134,0.0061818683],"study_design_scores_gemma":[0.0018095183,0.00008914081,0.6708067,0.00017043336,0.000030621137,0.020939957,0.00017389793,0.000060333125,0.00000867153,0.000031209605,0.30573916,0.00014038225],"about_ca_topic_score_codex":0.0016658675,"about_ca_topic_score_gemma":0.15854204,"teacher_disagreement_score":0.31881845,"about_ca_system_score_codex":0.00063610816,"about_ca_system_score_gemma":0.0035554252,"threshold_uncertainty_score":0.99955595},"labels":[],"label_agreement":null},{"id":"W2054505255","doi":"10.1016/j.vaccine.2015.01.060","title":"Dosing regimen of the 23-valent pneumococcal vaccination: A systematic review","year":2015,"lang":"en","type":"review","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal Children's Hospital; McGill University Health Centre; Public Health Agency of Canada; McGill University","funders":"McGill University","keywords":"Pneumococcal polysaccharide vaccine; Pneumococcal pneumonia; Medicine; Vaccination; Pediatrics; Regimen; Pneumococcal vaccine; Dosing; Streptococcus pneumoniae; Immunology; Internal medicine; Pneumococcal disease; Biology; Antibiotics","score_opus":0.051935258438319656,"score_gpt":0.3593670487848879,"score_spread":0.30743179034656826,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2054505255","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000002596003,0.99145216,0.0000040119644,0.00065986137,0.00047235712,0.0055910028,0.000018775268,0.0000614779,0.0017377788],"genre_scores_gemma":[0.000020713724,0.9967562,0.000007023599,0.0003430926,0.0002448326,0.00041629057,0.000034737746,0.000059971404,0.002117118],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.9968695,0.0005037931,0.0015495073,0.0003410718,0.00049317826,0.00024296207],"domain_scores_gemma":[0.9967656,0.00013773615,0.0012148888,0.0013360174,0.0003772703,0.00016849699],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00093146577,0.00043648892,0.003967621,0.00020881547,0.00009722559,0.000013033196,0.00034250098,0.00025668202,0.000088591856],"category_scores_gemma":[0.00062915817,0.00021746095,0.0010565139,0.0010035571,0.000009356319,0.000049989056,0.00014315646,0.00053053803,0.000155786],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000017565062,0.00009596458,0.000011087149,0.98401475,0.00032590984,0.000011018539,0.00001401784,1.13974025e-7,0.0000047043513,0.000047873997,0.003918821,0.011553987],"study_design_scores_gemma":[0.00024473213,0.000076345896,0.000027351938,0.5056706,0.008546454,0.00067528605,0.0000034125835,0.0000010722922,0.0000012177917,0.0000047484323,0.48462236,0.00012643637],"about_ca_topic_score_codex":0.0000024458452,"about_ca_topic_score_gemma":0.0000015752003,"teacher_disagreement_score":0.48070353,"about_ca_system_score_codex":0.000314704,"about_ca_system_score_gemma":0.0006660454,"threshold_uncertainty_score":0.8867801},"labels":[],"label_agreement":null},{"id":"W2055784852","doi":"10.1016/j.carres.2013.08.001","title":"Identification of the common antigenic determinant shared by Streptococcus pneumoniae serotypes 33A, 35A, and 20 capsular polysaccharides","year":2013,"lang":"en","type":"article","venue":"Carbohydrate Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Serotype; Polysaccharide; Chemistry; Typing; Streptococcus pneumoniae; Acetylation; Epitope; Residue (chemistry); Microbiology; Antigen; Gene; Biochemistry; Biology; Genetics","score_opus":0.02668871227058265,"score_gpt":0.3259868897655508,"score_spread":0.2992981774949681,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2055784852","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958795,0.0006708387,0.000003847301,0.0018537675,0.0001092919,0.001266098,0.000050065835,0.000029947842,0.00013667338],"genre_scores_gemma":[0.9984003,0.00019448588,0.0000013991414,0.000056804853,0.000050903658,0.00022126171,0.00001176983,0.000025366819,0.0010377552],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99807686,0.00027604864,0.00041161457,0.00032367796,0.0005026054,0.00040918204],"domain_scores_gemma":[0.9984798,0.000115268354,0.000117961725,0.0006611597,0.00043543187,0.00019036655],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005527671,0.00014726048,0.00027559552,0.0002218846,0.00035861402,0.00009475697,0.00023441862,0.00013862456,0.000078100325],"category_scores_gemma":[0.00016047539,0.000099153025,0.000097452124,0.00063187146,0.00043250943,0.00016697231,0.00016096515,0.00045914017,0.00006543534],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000004121548,0.000076436016,0.09337263,0.000092428054,0.00004020622,0.0000053116337,0.00018509201,0.0000018305235,0.90419024,0.000021122909,0.0006964902,0.0013141099],"study_design_scores_gemma":[0.0004424937,0.00020645928,0.26507387,0.00015310437,0.000057935205,0.000016397053,0.00030216287,0.001653959,0.7306568,0.0002720946,0.0010136405,0.00015105943],"about_ca_topic_score_codex":0.0004882591,"about_ca_topic_score_gemma":0.00008520066,"teacher_disagreement_score":0.1735334,"about_ca_system_score_codex":0.00007288412,"about_ca_system_score_gemma":0.00016476217,"threshold_uncertainty_score":0.4043343},"labels":[],"label_agreement":null},{"id":"W2055800567","doi":"10.1111/j.1440-1843.2006.01013.x","title":"Community‐acquired pneumonia: An Asia Pacific perspective","year":2007,"lang":"en","type":"review","venue":"Respirology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Mycoplasma pneumoniae; Medicine; Legionella; Pneumonia; Community-acquired pneumonia; Streptococcus pneumoniae; Incidence (geometry); Immunology; Etiology; Chlamydophila pneumoniae; Bronchiectasis; Microbiology; Antibiotics; Internal medicine; Chlamydia; Biology; Lung; Bacteria","score_opus":0.12859354408985957,"score_gpt":0.4334822136065958,"score_spread":0.3048886695167362,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2055800567","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00024139871,0.95348966,0.000026074977,0.00058639783,0.0006437334,0.0012331029,0.00004675201,0.00033817493,0.043394703],"genre_scores_gemma":[0.00043167622,0.99529934,0.000027595466,0.00064311986,0.0008749565,0.00015550961,0.00015419643,0.00015989433,0.002253733],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9955903,0.001819453,0.00088613515,0.0006391848,0.00028041634,0.0007844635],"domain_scores_gemma":[0.9967314,0.00043885043,0.00040065995,0.0016641385,0.0002712557,0.00049372134],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0009936447,0.0007026761,0.002839442,0.001108626,0.0005404169,0.00003059897,0.0004233632,0.0016035236,0.00021194748],"category_scores_gemma":[0.00030446725,0.0005564799,0.0008885542,0.00077932636,0.0005621808,0.000087435365,0.00015587056,0.002290844,0.0006819101],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010545152,0.0016491248,0.00018467054,0.0069981306,0.0012659089,0.0012150077,0.0007559395,6.57367e-7,0.00029102695,0.0036758508,0.0011781029,0.98268014],"study_design_scores_gemma":[0.00045594512,0.0019984106,0.00039238294,0.0013547548,0.0016210412,0.0033793456,0.0005774819,0.000001305039,0.0000015617854,0.0001770873,0.98961633,0.0004243554],"about_ca_topic_score_codex":0.00009261226,"about_ca_topic_score_gemma":0.00010169975,"teacher_disagreement_score":0.98843825,"about_ca_system_score_codex":0.00061380025,"about_ca_system_score_gemma":0.0007397241,"threshold_uncertainty_score":0.9996926},"labels":[],"label_agreement":null},{"id":"W2056326279","doi":"10.1097/mcp.0000000000000052","title":"Community-acquired pneumonia","year":2014,"lang":"en","type":"review","venue":"Current Opinion in Pulmonary Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Alberta Hospital","funders":"","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Intensive care medicine; MEDLINE; Internal medicine","score_opus":0.19491456751326414,"score_gpt":0.4539901169842319,"score_spread":0.2590755494709678,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2056326279","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000009241189,0.97995096,0.000033253717,0.00080075784,0.014104998,0.0015228263,0.000029174058,0.00019221434,0.0033565997],"genre_scores_gemma":[0.00006592107,0.99349517,0.0000049940286,0.00012542187,0.0039460976,0.0004023731,0.0014580034,0.00012118532,0.0003808559],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9952241,0.0012650847,0.0017557361,0.00059472636,0.0005654734,0.0005948805],"domain_scores_gemma":[0.9969574,0.0005250815,0.0005738929,0.001363137,0.000118685704,0.00046181105],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0012264237,0.0008409458,0.00373273,0.0012864058,0.0002735666,0.000012882932,0.00047128805,0.00054916437,0.00024662973],"category_scores_gemma":[0.00044504402,0.0005971113,0.0005747517,0.0012356081,0.0004910438,0.00008356156,0.0002091026,0.00241723,0.0003373027],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000133236845,0.00064029807,0.00025339785,0.0824961,0.00007762676,0.000026102934,0.00008267602,3.7076373e-7,0.000010904384,0.00012734537,0.0050737816,0.9111981],"study_design_scores_gemma":[0.0006739671,0.00044682386,0.0006302415,0.13517183,0.00046658932,0.0010963826,0.00004326477,0.000023179333,4.7790937e-8,0.000057982477,0.8609808,0.00040889022],"about_ca_topic_score_codex":0.0000349914,"about_ca_topic_score_gemma":0.000001914602,"teacher_disagreement_score":0.9107892,"about_ca_system_score_codex":0.00035259427,"about_ca_system_score_gemma":0.0004217745,"threshold_uncertainty_score":0.99988425},"labels":[],"label_agreement":null},{"id":"W2056596634","doi":"10.1111/j.1399-3046.2005.00275.x","title":"Invasive pneumococcal disease in pediatric organ transplant recipients: A high‐risk population","year":2005,"lang":"en","type":"article","venue":"Pediatric Transplantation","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Medicine; Pediatrics; Vaccination; Transplantation; Population; Incidence (geometry); Retrospective cohort study; Pneumococcal disease; Disease; Pneumococcal infections; Streptococcus pneumoniae; Surgery; Internal medicine; Immunology; Environmental health; Antibiotics","score_opus":0.007815870243093655,"score_gpt":0.23976061967149262,"score_spread":0.23194474942839896,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2056596634","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99715614,0.0001703525,0.00059538824,0.0006410957,0.00034811627,0.00064886454,0.00018746714,0.0001620053,0.00009058445],"genre_scores_gemma":[0.97757673,0.019930236,0.00012491389,0.00016482196,0.0013868074,0.00008677556,0.00064731063,0.00003656701,0.00004584474],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99812835,0.00013359275,0.00057936093,0.00042717636,0.00037321405,0.00035829516],"domain_scores_gemma":[0.99908084,0.00015869085,0.00016194671,0.00020682515,0.00006978482,0.00032188802],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019142752,0.00024877276,0.0002776036,0.0007258098,0.00015225205,0.000023018287,0.000080106925,0.00015937544,0.0000822856],"category_scores_gemma":[0.000067501554,0.00023289512,0.00012772088,0.0008927989,0.000018418952,0.00034269973,0.0000046640675,0.00037904247,0.00013858303],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003122597,0.00038595722,0.9955606,0.00028995165,0.000010685043,0.00012264616,0.0007389102,0.0014147696,0.0003719171,0.000037253045,0.000014235065,0.0007408462],"study_design_scores_gemma":[0.002835723,0.00014425401,0.9949792,0.000038347862,0.0012800342,0.00004459425,0.000007314517,0.00017986332,0.00011173406,0.00007612645,0.00005081618,0.00025199255],"about_ca_topic_score_codex":0.00026232665,"about_ca_topic_score_gemma":0.000661345,"teacher_disagreement_score":0.019759884,"about_ca_system_score_codex":0.00016832468,"about_ca_system_score_gemma":0.00019541843,"threshold_uncertainty_score":0.9497188},"labels":[],"label_agreement":null},{"id":"W2056869807","doi":"10.1186/1471-2458-14-442","title":"Knowledge, attitudes, beliefs and behaviours of older adults about pneumococcal immunization, a Public Health Agency of Canada/Canadian Institutes of Health Research Influenza Research Network (PCIRN) investigation","year":2014,"lang":"en","type":"article","venue":"BMC Public Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; McMaster University; Mount Sinai Hospital; University of Ottawa; McGill University Health Centre; Capital District Health Authority; Ottawa Hospital; Centre hospitalier universitaire de Québec; Izaak Walton Killam Health Centre; University of Toronto; Dalhousie University; BC Children's Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research; Public Health Agency; Public Health Agency of Canada; Michael Smith Health Research BC; Pfizer","keywords":"Medicine; Vaccination; Influenza vaccine; Pneumococcal vaccine; Biostatistics; Public health; Receipt; Immunization; Logistic regression; Family medicine; Health care; Population; Environmental health; Immunology; Streptococcus pneumoniae; Internal medicine; Nursing","score_opus":0.18277852945673037,"score_gpt":0.4176112754545151,"score_spread":0.23483274599778473,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2056869807","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95337325,0.007822046,0.00031816194,0.034604847,0.00035707653,0.0024889028,0.00009128444,0.000046113488,0.000898343],"genre_scores_gemma":[0.99678195,0.0007526494,0.00031632005,0.001517326,0.00023521305,0.000089905814,0.00017388836,0.000044762317,0.00008800217],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9899319,0.00423613,0.001959938,0.0005571934,0.0012456011,0.0020692563],"domain_scores_gemma":[0.991868,0.00060527585,0.00070876855,0.00086298154,0.0031890324,0.0027659496],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.022403436,0.00024017984,0.00094352564,0.0017152942,0.0014016164,0.000046902347,0.00035409632,0.00022140652,0.00003325696],"category_scores_gemma":[0.0035038537,0.00023097832,0.00007062273,0.0037008785,0.0009449104,0.0002887891,0.00016341507,0.0009880818,0.0000023501657],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001638157,0.00052715605,0.9398142,0.0043282732,0.00005011724,0.0000011332771,0.0078289965,0.00002554908,0.00006593667,0.0122876605,0.00917534,0.025879225],"study_design_scores_gemma":[0.0011390365,0.0011745687,0.9579159,0.0014351048,0.000003912626,0.000017559587,0.00043960524,0.00023205642,0.000015341531,0.000073546915,0.037420984,0.00013239186],"about_ca_topic_score_codex":0.8264774,"about_ca_topic_score_gemma":0.93519896,"teacher_disagreement_score":0.108721554,"about_ca_system_score_codex":0.0017698287,"about_ca_system_score_gemma":0.107198246,"threshold_uncertainty_score":0.99989843},"labels":[],"label_agreement":null},{"id":"W2057024099","doi":"10.1378/chest.125.5.1888","title":"Guidelines for Empiric Antimicrobial Prescribing in Community-Acquired Pneumonia","year":2004,"lang":"en","type":"review","venue":"CHEST Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":96,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Streptococcus pneumoniae; Community-acquired pneumonia; Empiric therapy; Intensive care medicine; Pneumonia; Antimicrobial; Comorbidity; Empiric treatment; Antibiotics; Internal medicine; Alternative medicine; Pathology; Microbiology","score_opus":0.26887125509468696,"score_gpt":0.4490582578414102,"score_spread":0.18018700274672322,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057024099","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000642135,0.99531174,0.00028599674,0.0010455924,0.0012371929,0.001161719,0.000043974873,0.00006166584,0.00021000055],"genre_scores_gemma":[0.000082918574,0.99639106,0.00083367067,0.000665546,0.0014847472,0.00006903748,0.000069588415,0.00010737961,0.00029606462],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9973134,0.00029514276,0.0014726619,0.00022885257,0.00019565257,0.0004942962],"domain_scores_gemma":[0.9980838,0.00019453408,0.00059302815,0.00043253688,0.00043696575,0.00025913806],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010764028,0.0004740871,0.0018650073,0.00067770074,0.0005497169,0.00011192043,0.00032791993,0.0004921535,0.000026212845],"category_scores_gemma":[0.00088236266,0.0003566457,0.0009804115,0.0004569644,0.00010610763,0.0001237931,0.00008154133,0.0017373268,0.000032073793],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004883093,0.0012924763,0.00042342304,0.124643356,0.00078320893,0.00059776794,0.0006341616,0.00005985949,0.002445818,0.000015553189,0.009318131,0.8597374],"study_design_scores_gemma":[0.0012295736,0.00022836783,0.00010578574,0.056749992,0.0009126414,0.0071928226,0.00004323318,0.0000035239955,0.000014145849,0.000032889933,0.9331785,0.00030851614],"about_ca_topic_score_codex":0.000019932597,"about_ca_topic_score_gemma":0.000024058487,"teacher_disagreement_score":0.9238604,"about_ca_system_score_codex":0.0006071592,"about_ca_system_score_gemma":0.001904317,"threshold_uncertainty_score":0.99988854},"labels":[],"label_agreement":null},{"id":"W2057162296","doi":"10.1128/iai.02251-14","title":"MicroRNA-155 Is Required for Clearance of Streptococcus pneumoniae from the Nasopharynx","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Joseph’s Healthcare Hamilton; McMaster University","funders":"","keywords":"Streptococcus pneumoniae; Biology; Immunology; Macrophage polarization; Effector; Microbiology; Pneumococcal infections; Bacterial pneumonia; Macrophage; In vitro","score_opus":0.02324656329413697,"score_gpt":0.28875381673108946,"score_spread":0.2655072534369525,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057162296","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99609625,0.000117444906,0.0005552103,0.001316513,0.00029295156,0.0003956289,0.000037257443,0.000048717968,0.0011400487],"genre_scores_gemma":[0.99810153,0.0001331777,0.000016546042,0.0013443402,0.00014275327,0.000038227765,0.000011849289,0.000011670026,0.00019990097],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993636,0.00009931077,0.00021395339,0.0001301172,0.0000736915,0.00011932887],"domain_scores_gemma":[0.9991848,0.00021127811,0.00010835043,0.00031710492,0.00012386934,0.00005461999],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022796835,0.00010296664,0.00019893903,0.000043019096,0.00029638142,0.00001687462,0.000048610167,0.000089110734,0.000059835635],"category_scores_gemma":[0.00017524709,0.000071774906,0.000113929,0.00012344385,0.00014253869,0.00007594648,0.000028307417,0.00019922211,0.00001667022],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011324355,0.00023117517,0.31263745,0.0000815286,0.00013902523,4.0286272e-7,0.0006611864,0.0000036708361,0.6614173,0.00024219441,0.001654889,0.022817954],"study_design_scores_gemma":[0.0012773024,0.00045717784,0.806287,0.000080743215,0.00008732081,0.000013137064,0.000048126793,0.00018608749,0.031131482,0.0003830407,0.15996005,0.000088513654],"about_ca_topic_score_codex":0.00040379123,"about_ca_topic_score_gemma":0.000057507532,"teacher_disagreement_score":0.6302858,"about_ca_system_score_codex":0.000017733464,"about_ca_system_score_gemma":0.000031808268,"threshold_uncertainty_score":0.29268956},"labels":[],"label_agreement":null},{"id":"W2057288433","doi":"10.1007/s00431-010-1195-6","title":"Pediatric complicated pneumonia and pneumococcal serotype replacement: trends in hospitalized children pre and post introduction of routine vaccination with Pneumococcal Conjugate Vaccine (PCV7)","year":2010,"lang":"en","type":"article","venue":"European Journal of Pediatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Stollery Children's Hospital; University of Alberta","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Serotype; Pneumonia; Vaccination; Pneumococcal pneumonia; Pediatrics; Pneumococcal vaccination; Streptococcus pneumoniae; Virology; Antibiotics; Internal medicine; Microbiology","score_opus":0.004517322711876174,"score_gpt":0.23238207257311302,"score_spread":0.22786474986123684,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057288433","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997078,0.00017493624,0.000033851407,0.001902568,0.00023096986,0.00031534987,0.000016921493,0.000030084517,0.00021733544],"genre_scores_gemma":[0.9977259,0.00046401974,0.00019015132,0.00005055225,0.0014227713,0.0000021176613,0.000033505272,0.000047903384,0.000063049854],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99800164,0.00018255536,0.00093068485,0.00032345814,0.00031197554,0.0002496702],"domain_scores_gemma":[0.99806374,0.000047598514,0.000842672,0.00023297966,0.00054474745,0.00026825196],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009594412,0.00026282622,0.0005314056,0.0010174508,0.00010371609,0.000040469444,0.00011812448,0.00008370392,0.00004634783],"category_scores_gemma":[0.00018568577,0.00020233744,0.00007874493,0.0008547338,0.00005423436,0.0002564268,0.00007181755,0.00085267134,0.0000028488425],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00070592185,0.0003304888,0.9124812,0.000087621076,0.00004126344,0.000049441158,0.00019623087,0.000019700476,0.08437944,0.00003003701,0.000102358106,0.0015763132],"study_design_scores_gemma":[0.005773565,0.0036241792,0.9873964,0.000016771002,0.0004681019,0.0019151123,0.000028275248,0.000039935418,0.00025355644,0.000004914731,0.00028927065,0.00018987263],"about_ca_topic_score_codex":0.00000859977,"about_ca_topic_score_gemma":0.000010359835,"teacher_disagreement_score":0.08412589,"about_ca_system_score_codex":0.00003562361,"about_ca_system_score_gemma":0.00007117625,"threshold_uncertainty_score":0.8251082},"labels":[],"label_agreement":null},{"id":"W2057676815","doi":"10.1016/j.vaccine.2012.04.017","title":"Use of surveillance data to estimate the effectiveness of the 7-valent conjugate pneumococcal vaccine in children less than 5 years of age over a 9 year period","year":2012,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":47,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Institut National de Santé Publique du Québec","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Confidence interval; Vaccination; Odds ratio; Cohort; Pediatrics; Logistic regression; Streptococcus pneumoniae; Internal medicine; Immunology; Antibiotics","score_opus":0.03254065701970318,"score_gpt":0.31833696394753197,"score_spread":0.2857963069278288,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057676815","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99845207,0.00010053305,0.000010643686,0.00023569309,0.00015887708,0.0008515058,0.00015249373,0.000011871851,0.000026302774],"genre_scores_gemma":[0.99976814,0.0000238961,0.000018643088,0.000044249005,0.00006109846,0.000015862728,0.000023576962,0.000021004102,0.000023544708],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987152,0.00030995428,0.00035727868,0.00019010522,0.0002033931,0.00022404786],"domain_scores_gemma":[0.9984072,0.00025135028,0.00015443368,0.001045683,0.00006527715,0.00007607629],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008917463,0.00013378274,0.000451622,0.000100666875,0.00003138302,0.0000055120217,0.000296909,0.00006361344,0.000019227178],"category_scores_gemma":[0.00037394528,0.00007856047,0.00008564247,0.00044260672,0.00002845066,0.000099312434,0.00030345985,0.00017802803,0.000004161215],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024127173,0.00022977873,0.8413428,0.00009809183,0.00007755491,0.0000018667561,0.00014098064,0.000114200324,0.15748131,0.00004977401,0.000042767428,0.0001796064],"study_design_scores_gemma":[0.0014502546,0.00014842614,0.98981786,0.00024444837,0.0000680762,0.0000307868,0.000018609564,0.000041167827,0.0076936185,0.0000037786463,0.00040482878,0.00007811802],"about_ca_topic_score_codex":0.00034313666,"about_ca_topic_score_gemma":0.00025252256,"teacher_disagreement_score":0.1497877,"about_ca_system_score_codex":0.0000284261,"about_ca_system_score_gemma":0.000052661027,"threshold_uncertainty_score":0.3203603},"labels":[],"label_agreement":null},{"id":"W2058136274","doi":"10.1016/j.amjmed.2005.05.011","title":"Antimicrobial treatment of lower respiratory tract infections in the hospital setting","year":2005,"lang":"en","type":"review","venue":"The American Journal of Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":58,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Medicine; Levofloxacin; Moxifloxacin; Gatifloxacin; Telithromycin; Pneumonia; Ceftriaxone; Azithromycin; Respiratory tract infections; Chronic bronchitis; Streptococcus pneumoniae; Combination therapy; Intensive care medicine; Community-acquired pneumonia; Antibiotics; Gemifloxacin; Internal medicine; Respiratory system; Microbiology; Clarithromycin","score_opus":0.03670973596586912,"score_gpt":0.37145110066657744,"score_spread":0.3347413647007083,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2058136274","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.033990305,0.95542693,0.000011035857,0.008565931,0.00073107076,0.0007937944,0.000012908987,0.000011527286,0.00045648788],"genre_scores_gemma":[0.026275171,0.96947956,0.000014678105,0.0011560668,0.0029890307,0.000016162896,0.0000030813603,0.000037962265,0.000028271372],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9970586,0.0006845086,0.0014095801,0.00015874064,0.00042671946,0.00026186975],"domain_scores_gemma":[0.9961409,0.00082667684,0.0022856777,0.00047619335,0.00015641413,0.00011411268],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001216261,0.00035653898,0.0023621907,0.0005820853,0.0001103656,0.0000076543065,0.00029047302,0.000088296256,0.000048105205],"category_scores_gemma":[0.00027191394,0.00014182721,0.0007650988,0.0009748565,0.0010627016,0.000052423857,0.000015807442,0.0008675448,0.000008256464],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042738448,0.0017988243,0.0005274011,0.00030716343,0.00040441062,0.00037098615,0.00091119425,0.0000062140152,0.00008648394,0.0000064511723,0.001178484,0.9943597],"study_design_scores_gemma":[0.0013686066,0.016446272,0.0015821209,0.0077023376,0.0028114365,0.006925092,0.00050984434,4.2769113e-7,0.0000012629184,0.0000028256857,0.96252245,0.00012729903],"about_ca_topic_score_codex":0.000039511473,"about_ca_topic_score_gemma":0.00000680242,"teacher_disagreement_score":0.99423236,"about_ca_system_score_codex":0.00027133353,"about_ca_system_score_gemma":0.00070561643,"threshold_uncertainty_score":0.5783546},"labels":[],"label_agreement":null},{"id":"W2058858637","doi":"10.1378/chest.09-2829","title":"Presentations to EDs in Alberta, Canada, for Pneumonia","year":2010,"lang":"en","type":"article","venue":"CHEST Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dalhousie University; University of Alberta; Women and Children’s Health Research Institute","funders":"Canadian Institutes of Health Research; Government of Alberta","keywords":"Medicine; Pneumonia; Intensive care medicine; Internal medicine","score_opus":0.01336534507479629,"score_gpt":0.2940647032805341,"score_spread":0.28069935820573777,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2058858637","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9695133,0.000009196519,0.00019349453,0.025969904,0.0010611772,0.00024450792,0.000005560509,0.0000064078044,0.002996428],"genre_scores_gemma":[0.9944149,0.0000049624714,0.00033993603,0.0015729634,0.00063963817,0.000015336542,0.0000025962265,0.000013060744,0.0029965895],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9993872,0.000009857577,0.00019130029,0.00008801327,0.0001187714,0.00020486291],"domain_scores_gemma":[0.99934864,0.00009519167,0.000039757164,0.00011202166,0.00009853027,0.00030583315],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010425968,0.00007124123,0.000121332305,0.00012129513,0.00014524965,0.000024070046,0.00006189859,0.000051186576,0.00009340894],"category_scores_gemma":[0.00030110247,0.0000589014,0.000051457297,0.00014552694,0.00001809993,0.000050661798,0.000009222176,0.00039699013,0.000013103815],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054063465,0.00028413325,0.4440094,0.00007611241,0.00006994884,0.00013500942,0.0009411126,0.00012020385,0.48910245,0.00037263404,0.05794615,0.0068888017],"study_design_scores_gemma":[0.0005377914,0.00007332669,0.46227095,0.000016120706,0.000021342234,0.0005269692,0.000076244796,0.000042569318,0.0017963473,0.000052971176,0.5345229,0.00006246918],"about_ca_topic_score_codex":0.04755296,"about_ca_topic_score_gemma":0.82165164,"teacher_disagreement_score":0.77409863,"about_ca_system_score_codex":0.000060430728,"about_ca_system_score_gemma":0.0009281532,"threshold_uncertainty_score":0.95878947},"labels":[],"label_agreement":null},{"id":"W2059047459","doi":"10.1016/s0035-9203(01)90199-3","title":"Acute lower respiratory infections among children hospitalized in Bangui, Central African Republic: toward a new case-management algorithm","year":2001,"lang":"en","type":"article","venue":"Transactions of the Royal Society of Tropical Medicine and Hygiene","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Medical Research Council; Canadian Bureau for International Education","keywords":"Medicine; Pneumonia; Pediatrics; Cause of death; Under-five; Mortality rate; Disease; Intensive care medicine; Surgery; Internal medicine","score_opus":0.01345440297357772,"score_gpt":0.2602142253004578,"score_spread":0.24675982232688007,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059047459","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9712017,0.0002930046,0.01920535,0.0072201174,0.00031315722,0.00068764255,0.000019209196,0.00005721445,0.0010025817],"genre_scores_gemma":[0.9973344,0.00045127046,0.0007415281,0.00052887766,0.00017867384,0.000027595885,0.0000027433239,0.00001865444,0.0007162197],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984974,0.00005909256,0.0005307474,0.00028200826,0.00030708362,0.0003236173],"domain_scores_gemma":[0.9990914,0.000050221795,0.00013716744,0.00037100833,0.000087987995,0.00026220392],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000105384315,0.00020134305,0.0004988943,0.000119402706,0.00018327228,0.00000713211,0.00011827681,0.000153577,0.00023995842],"category_scores_gemma":[0.000026358926,0.0001364068,0.00040261226,0.0006915215,0.00060374674,0.00007723804,0.00002588921,0.0004011723,6.6319075e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034717258,0.0038087603,0.8455322,0.00041684075,0.004057891,0.0003287063,0.006361725,0.0012569039,0.0009164345,0.00023934868,0.009543795,0.12719026],"study_design_scores_gemma":[0.0047703465,0.0013833493,0.98368275,0.00026816913,0.0010213951,0.00025811404,0.0007647396,0.0006408847,0.00013174924,0.00005493538,0.0068535134,0.00017007613],"about_ca_topic_score_codex":0.0014315667,"about_ca_topic_score_gemma":0.00011372213,"teacher_disagreement_score":0.13815056,"about_ca_system_score_codex":0.00009254489,"about_ca_system_score_gemma":0.00010104316,"threshold_uncertainty_score":0.5562508},"labels":[],"label_agreement":null},{"id":"W2059052713","doi":"10.1139/w2012-051","title":"Protective efficacy of a<i>Mycoplasma pneumoniae</i>P1C DNA vaccine fused with the B subunit of<i>Escherichia coli</i>heat-labile enterotoxin","year":2012,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"National Natural Science Foundation of China","keywords":"Biology; Microbiology; Heat-labile enterotoxin; DNA vaccination; Nasal administration; Mycoplasma pneumoniae; Virology; Escherichia coli; Immunization; Antibody; Immunology; Enterotoxin; Pneumonia; Gene; Medicine","score_opus":0.010197031952810201,"score_gpt":0.22257150829376912,"score_spread":0.2123744763409589,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059052713","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961116,0.00041808744,0.0000680862,0.0021345709,0.0003431531,0.00064790697,0.000065758584,0.0000055756,0.00020528157],"genre_scores_gemma":[0.9989999,0.0000111026375,0.000046427514,0.00063080114,0.0001965432,0.000013762624,0.000005328648,0.000024833183,0.000071313974],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986391,0.00023870316,0.0005029992,0.00011612767,0.00006452549,0.00043852435],"domain_scores_gemma":[0.99832505,0.00015773125,0.00039423752,0.000261571,0.00040369155,0.00045772374],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041674054,0.00018891807,0.00057097943,0.00029358477,0.00012275031,0.0000056946774,0.00020052386,0.00016299516,0.00016143805],"category_scores_gemma":[0.00012023359,0.00011371363,0.00016954303,0.00034873257,0.0003033239,0.00007022133,0.00001411758,0.0005178971,0.000010914242],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022236552,0.00013714947,0.08978979,0.000045120847,0.00030151644,0.000029618304,0.00089096604,0.000020418964,0.9074555,0.000021234484,0.00095823343,0.00012806435],"study_design_scores_gemma":[0.0111245625,0.008781582,0.17312257,0.0006954849,0.0010450495,0.018397143,0.0013267605,0.000004859103,0.5603063,0.0000144538835,0.22467954,0.00050167413],"about_ca_topic_score_codex":0.0007508572,"about_ca_topic_score_gemma":0.006043319,"teacher_disagreement_score":0.3471492,"about_ca_system_score_codex":0.00013731974,"about_ca_system_score_gemma":0.0012610359,"threshold_uncertainty_score":0.4637107},"labels":[],"label_agreement":null},{"id":"W2059473370","doi":"10.4187/respcare.02788","title":"A Worldwide Perspective of Nursing Home-Acquired Pneumonia Compared With Community-Acquired Pneumonia","year":2013,"lang":"en","type":"article","venue":"Respiratory Care","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Streptococcus pneumoniae; Internal medicine; Etiology; Intensive care unit; Heart failure; Diabetes mellitus; Incidence (geometry); Intensive care medicine","score_opus":0.031975815745492596,"score_gpt":0.30649485013619,"score_spread":0.2745190343906974,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059473370","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98110884,0.0011343706,0.00005532085,0.0007577242,0.0002505764,0.0013318623,0.000052908657,0.00032351914,0.0149849],"genre_scores_gemma":[0.99788296,0.000011170976,0.00014205377,0.001267098,0.00017907539,0.00018656514,0.000033188415,0.000112506255,0.00018540153],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99699694,0.0005442557,0.00067431625,0.00050223357,0.0006223009,0.00065995083],"domain_scores_gemma":[0.9961681,0.00017795182,0.00035786955,0.0012929896,0.0015256281,0.00047749872],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00020496167,0.00052145397,0.0010041194,0.00056119007,0.0006639622,0.00007412975,0.00034222804,0.00024294491,0.0001809096],"category_scores_gemma":[0.000088764034,0.00043575096,0.00029893644,0.001006242,0.0008591711,0.0003347939,0.000087390465,0.00052729016,0.00012891178],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027771824,0.0008502931,0.06386579,0.00040567268,0.00033692596,0.000086728025,0.015310527,0.000095652525,0.9143734,0.00032437185,0.0004794248,0.003593477],"study_design_scores_gemma":[0.0069662393,0.0045496807,0.81048274,0.0033206304,0.00077964633,0.00034441808,0.11077605,0.000056954457,0.05001159,0.0003343692,0.011048968,0.0013286967],"about_ca_topic_score_codex":0.00045023373,"about_ca_topic_score_gemma":0.00016501524,"teacher_disagreement_score":0.8643618,"about_ca_system_score_codex":0.0009211225,"about_ca_system_score_gemma":0.0005930251,"threshold_uncertainty_score":0.99980944},"labels":[],"label_agreement":null},{"id":"W2059488828","doi":"10.1007/s11908-011-0178-8","title":"Modern Management of Community-Acquired Pneumonia: Is It Cost-Effective and are Outcomes Acceptable?","year":2011,"lang":"en","type":"article","venue":"Current Infectious Disease Reports","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Intensive care medicine; Medicine; Community-acquired pneumonia; Procalcitonin; Pneumonia; Real world evidence; Antibiotics; Surgery; Internal medicine; Sepsis","score_opus":0.07261874130703697,"score_gpt":0.3410262303372257,"score_spread":0.26840748903018874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059488828","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.988572,0.00074648275,0.0002605106,0.00021555976,0.0009328178,0.0024304441,0.00004029166,0.00018112251,0.0066207945],"genre_scores_gemma":[0.9979476,0.0005271785,0.0000056220583,0.0004037903,0.000037033744,0.0007376814,0.00001785217,0.000036836067,0.00028642258],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982084,0.00019075253,0.00057500164,0.00033041838,0.0003492185,0.00034619716],"domain_scores_gemma":[0.99781156,0.00008166691,0.0005207088,0.0008444363,0.0002472677,0.0004943939],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00036849047,0.0003235254,0.00057777984,0.00023382356,0.00032231695,0.000023338633,0.00006710962,0.00009375005,0.00018192834],"category_scores_gemma":[0.000117139134,0.00027722627,0.00028431235,0.00026379127,0.00015326838,0.00016778625,0.00019319942,0.00033021037,0.000015683392],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000576357,0.0020936534,0.9644671,0.0012175224,0.00063862343,0.00046748205,0.0009396229,0.0000051818583,0.0001846365,0.000027874026,0.0006265867,0.029274076],"study_design_scores_gemma":[0.00089265837,0.00019813394,0.98692745,0.00044747072,0.0011862231,0.00025770074,0.00029526913,0.000031311465,0.00027241415,0.0007644156,0.008459925,0.00026704956],"about_ca_topic_score_codex":0.000054678017,"about_ca_topic_score_gemma":0.000016315402,"teacher_disagreement_score":0.029007027,"about_ca_system_score_codex":0.000186198,"about_ca_system_score_gemma":0.00007372435,"threshold_uncertainty_score":0.999968},"labels":[],"label_agreement":null},{"id":"W2060000313","doi":"10.1139/w08-030","title":"Molecular characteristics of penicillin-binding protein 2b, 2x, and 1a sequences in penicillin-nonsusceptible Streptococcus pneumoniae isolates in Shenyang, China","year":2008,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Penicillin; Penicillin binding proteins; Streptococcus pneumoniae; Cefotaxime; Microbiology; Multilocus sequence typing; Biology; Gene; Klebsiella pneumoniae; Genetics; Antibiotics; Genotype; Escherichia coli","score_opus":0.01202505149128376,"score_gpt":0.23096304180709193,"score_spread":0.21893799031580816,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060000313","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99797356,0.00066547224,0.0000058809196,0.0007243984,0.00016286985,0.00032245327,0.000049232207,0.0000034121763,0.00009270067],"genre_scores_gemma":[0.9995437,0.0001400013,0.00005960497,0.00010578459,0.00004394968,0.00000561768,0.0000095576515,0.000015510994,0.00007621864],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99857706,0.00012608344,0.00069758296,0.00017725758,0.000042181076,0.0003798187],"domain_scores_gemma":[0.99909806,0.000038709597,0.000326343,0.0001343604,0.000109371955,0.0002931407],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002838604,0.00017046634,0.0005768153,0.00081590086,0.000080881204,0.000008186082,0.00013110686,0.00020730658,0.00007478791],"category_scores_gemma":[0.00014713645,0.00014861269,0.00009649535,0.0002803831,0.00036936102,0.00006659674,0.0000152120365,0.00055306964,0.0000043772284],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016195076,0.00002861569,0.33182323,0.0000334476,0.000026537804,0.00090035034,0.00042336265,0.000012531007,0.66658247,0.000016340797,0.000013549299,0.00012336124],"study_design_scores_gemma":[0.005677798,0.004592835,0.8191699,0.002122491,0.00016889875,0.016077718,0.0010322384,0.000081047205,0.14250079,0.00015276465,0.0075874976,0.00083603186],"about_ca_topic_score_codex":0.0016507121,"about_ca_topic_score_gemma":0.011188379,"teacher_disagreement_score":0.5240817,"about_ca_system_score_codex":0.00019648751,"about_ca_system_score_gemma":0.00132394,"threshold_uncertainty_score":0.6243378},"labels":[],"label_agreement":null},{"id":"W2060024721","doi":"10.1378/chest.136.4_meetingabstracts.50s-a","title":"BACTEREMIC HOSPITAL-ACQUIRED PNEUMONIA CASES FROM THE ATTAIN STUDIES","year":2009,"lang":"en","type":"article","venue":"CHEST Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Medicine; Pneumonia; Vancomycin; Hospital-acquired pneumonia; Intensive care medicine; Antibiotics; Bacteremia; Ventilator-associated pneumonia; Internal medicine; Staphylococcus aureus; Microbiology; Bacteria","score_opus":0.05015315640480489,"score_gpt":0.3299836111776265,"score_spread":0.2798304547728216,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060024721","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95782644,0.002465244,0.00001848751,0.03845968,0.0006716332,0.00012051021,0.000006174952,0.000048279657,0.0003835522],"genre_scores_gemma":[0.99201626,0.0009562479,0.000058093647,0.005033411,0.001654183,0.0000036941024,0.0000029882808,0.000012629583,0.00026247528],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990688,0.00006598277,0.00027777857,0.00014288753,0.0001954809,0.00024908877],"domain_scores_gemma":[0.9991255,0.00021970658,0.00013196112,0.00023691665,0.0001448086,0.00014112775],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018098378,0.00015724095,0.00026440748,0.000049576556,0.00048395392,0.00006354188,0.00011835614,0.00009580169,0.00008936472],"category_scores_gemma":[0.00040728247,0.00008843435,0.00016454728,0.00013686944,0.00012417826,0.000113271075,0.000020701767,0.00045948604,0.00007508334],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012723121,0.00085612794,0.34217623,0.0000467293,0.001046437,0.0041129403,0.007008706,0.000012370891,0.5479264,0.00006932454,0.0627713,0.03384617],"study_design_scores_gemma":[0.00085849385,0.0008043868,0.8985224,0.0002258281,0.0002296441,0.002893891,0.0016721685,0.0000057749407,0.0017277794,0.00049033144,0.0924079,0.00016142265],"about_ca_topic_score_codex":0.000006162758,"about_ca_topic_score_gemma":0.000006641942,"teacher_disagreement_score":0.5563462,"about_ca_system_score_codex":0.0001170857,"about_ca_system_score_gemma":0.00011472859,"threshold_uncertainty_score":0.3722231},"labels":[],"label_agreement":null},{"id":"W2060126702","doi":"10.1016/j.emc.2011.12.002","title":"Pneumonia in Adults: the Practical Emergency Department Perspective","year":2012,"lang":"en","type":"article","venue":"Emergency Medicine Clinics of North America","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sunnybrook Health Science Centre; University of Toronto; Health Sciences Centre; Royal College of Physicians and Surgeons of Canada","funders":"","keywords":"Medicine; Pneumonia; Emergency department; Intensive care medicine; Perspective (graphical); Community-acquired pneumonia; Broad spectrum; Emergency physician; Emergency medicine; Pediatrics; Internal medicine; Psychiatry","score_opus":0.04127976984113999,"score_gpt":0.39171776029520256,"score_spread":0.35043799045406254,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060126702","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.957959,0.0032374044,0.00019773339,0.02139142,0.004022759,0.00096042984,0.000023457756,0.00006374443,0.012144026],"genre_scores_gemma":[0.9873589,0.010055334,0.000090866655,0.0006259787,0.0012316088,0.00011158093,0.000029672128,0.00003546378,0.00046054632],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9968743,0.00021170477,0.0014061619,0.00035137532,0.00057226524,0.0005842407],"domain_scores_gemma":[0.9977569,0.00023601089,0.0005408845,0.00064728205,0.0004240255,0.0003949237],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00056449254,0.0002891067,0.0006385333,0.00021143196,0.00013098259,7.5049593e-7,0.00017213116,0.0000957888,0.0024764764],"category_scores_gemma":[0.0025625874,0.00018058202,0.0002560804,0.0011851311,0.0003722241,0.00015473172,0.000073064504,0.0006824438,0.0001252334],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017603696,0.0013763631,0.9803525,0.00007818926,0.00015667257,0.0000132816585,0.0025893222,0.000010270639,0.00011968657,0.0002594457,0.01138533,0.0034828822],"study_design_scores_gemma":[0.00085145794,0.001396986,0.8549741,0.000092671995,0.00025095625,0.00003595616,0.00275351,0.0000739845,0.0000061196138,0.00007918599,0.13930997,0.0001751164],"about_ca_topic_score_codex":0.00028944117,"about_ca_topic_score_gemma":0.0002710682,"teacher_disagreement_score":0.12792464,"about_ca_system_score_codex":0.000105953586,"about_ca_system_score_gemma":0.00018873258,"threshold_uncertainty_score":0.9984354},"labels":[],"label_agreement":null},{"id":"W2060879405","doi":"10.1093/jac/dkg278","title":"Pharmacodynamic activity of azithromycin against macrolide-susceptible and -resistant Streptococcus pneumoniae simulating clinically achievable free serum, epithelial lining fluid and middle ear fluid concentrations","year":2003,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Health Sciences Centre","funders":"","keywords":"Azithromycin; Streptococcus pneumoniae; Microbiology; Cmax; Pharmacodynamics; Pharmacokinetics; Macrolide Antibiotics; Antibacterial agent; Biology; Pharmacology; Chemistry; Antibiotics; Erythromycin","score_opus":0.01790805555626811,"score_gpt":0.28841858435572587,"score_spread":0.27051052879945775,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060879405","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971608,0.00012380585,0.00035838637,0.0012970755,0.00025555046,0.00037524418,0.000069360365,0.000023737148,0.00033607308],"genre_scores_gemma":[0.9961893,0.00114466,0.0010970338,0.0012532761,0.00021115529,0.0000015241461,0.000001998981,0.000044553726,0.00005652917],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979617,0.00017420172,0.0010062995,0.0002682016,0.0002469775,0.00034264545],"domain_scores_gemma":[0.9981555,0.00023241637,0.0007523723,0.00024931028,0.000364023,0.0002464134],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006856322,0.00027275586,0.0007511859,0.00018060976,0.00025723004,0.00005527208,0.000120799916,0.00018413253,0.000068010595],"category_scores_gemma":[0.00026923083,0.00023390992,0.00024302704,0.00023567487,0.00027043142,0.00024873746,0.000032289976,0.000531865,0.0000013711641],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004699791,0.000409774,0.04221531,0.00014051766,0.00026794148,0.000035221674,0.00039477012,0.00045506266,0.95381194,0.000011391136,0.0001342166,0.0016538523],"study_design_scores_gemma":[0.014643788,0.0025026794,0.02534976,0.0009746604,0.00033452542,0.00033830694,0.0002599987,0.0021228536,0.94996774,0.00004554776,0.003038379,0.000421768],"about_ca_topic_score_codex":0.00001099348,"about_ca_topic_score_gemma":0.000015477584,"teacher_disagreement_score":0.01686555,"about_ca_system_score_codex":0.00006863675,"about_ca_system_score_gemma":0.0003748432,"threshold_uncertainty_score":0.95385695},"labels":[],"label_agreement":null},{"id":"W2060903589","doi":"10.1128/aac.46.5.1295-1301.2002","title":"Antimicrobial Resistance among Clinical Isolates of <i>Streptococcus pneumoniae</i> in Canada during 2000","year":2002,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Sunnybrook Health Science Centre; Queen Elizabeth II Health Sciences Centre; Université de Montréal; Hôpital Maisonneuve-Rosemont; Calgary Laboratory Services; University of Toronto; Health Sciences Centre; Mount Sinai Hospital","funders":"","keywords":"Gatifloxacin; Moxifloxacin; Levofloxacin; Ciprofloxacin; Microbiology; Streptococcus pneumoniae; Penicillin; Telithromycin; Antimicrobial; Trimethoprim; Sulfamethoxazole; Antibacterial agent; Gemifloxacin; Clindamycin; Medicine; Biology; Antibiotics","score_opus":0.014320263532670003,"score_gpt":0.24837024605645341,"score_spread":0.23404998252378342,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060903589","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954164,0.00004341619,0.0000014609274,0.0031603822,0.00019370305,0.0003212262,0.000027950204,0.000021128091,0.00081431784],"genre_scores_gemma":[0.9924279,0.0016266977,0.000019081719,0.004667995,0.000103807695,0.0000045313363,0.000004162845,0.00002897937,0.0011168816],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99856174,0.000044417433,0.0006112523,0.00034342404,0.000106611966,0.00033254482],"domain_scores_gemma":[0.9993772,0.000030472675,0.00016902773,0.00023976094,0.00004975545,0.0001338104],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008337185,0.0002058137,0.00048882555,0.00008747785,0.00009768566,0.000015718208,0.00009108838,0.00012288749,0.00022913358],"category_scores_gemma":[0.000011706642,0.00018544245,0.00011711966,0.00022888783,0.00016491556,0.00007994698,0.000025982506,0.0002670877,0.000005033215],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000057185043,0.00028737215,0.9094642,0.00012480513,0.00006683123,0.0000722428,0.00016366794,0.000005344134,0.07528109,0.0000011154408,0.013738601,0.0007375897],"study_design_scores_gemma":[0.003446897,0.000059789785,0.95107985,0.00035492628,0.0000333615,0.00003656445,0.0000310858,0.000058029455,0.022584774,0.000001720008,0.022072462,0.0002405585],"about_ca_topic_score_codex":0.03716335,"about_ca_topic_score_gemma":0.16653939,"teacher_disagreement_score":0.12937604,"about_ca_system_score_codex":0.00011401108,"about_ca_system_score_gemma":0.0001960568,"threshold_uncertainty_score":0.96924824},"labels":[],"label_agreement":null},{"id":"W2061050528","doi":"10.1097/00001432-200204000-00009","title":"Appropriate use of antibiotics for respiratory infections: review of recent statements and position papers","year":2002,"lang":"en","type":"review","venue":"Current Opinion in Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Thoracic Society","funders":"","keywords":"Medicine; Antibiotics; Intensive care medicine; Pneumonia; Antibiotic resistance; Bronchitis; Pharyngitis; Sinusitis; Chronic bronchitis; Respiratory tract infections; Respiratory system; Internal medicine; Surgery; Microbiology","score_opus":0.17681638313777473,"score_gpt":0.44831474513392067,"score_spread":0.27149836199614596,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061050528","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000087448796,0.99302894,0.000043005573,0.000023050097,0.0022162423,0.003672874,0.00079645345,0.000057383004,0.0000745867],"genre_scores_gemma":[0.00006119126,0.998979,0.0000063908437,0.00006484833,0.00018733957,0.00013458486,0.0005075033,0.000052135347,0.0000070563165],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9972395,0.00031048796,0.001478141,0.00044633477,0.00027356212,0.0002520262],"domain_scores_gemma":[0.99785984,0.00029082602,0.000879822,0.00041278952,0.00037311396,0.0001836039],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00022601362,0.00041846654,0.0017467518,0.0007002983,0.00008822697,0.000018198294,0.000062698724,0.00020252215,0.000075359225],"category_scores_gemma":[0.00078853255,0.00035341515,0.0005467264,0.0007398164,0.00017035591,0.0001726086,0.00005859166,0.00030320117,0.000004429581],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008256385,0.0016564319,0.004247541,0.442308,0.00021777194,6.128327e-7,0.000010612201,0.000002915909,0.0000039102965,0.0001015486,0.000926677,0.5505157],"study_design_scores_gemma":[0.0007650263,0.0005686989,0.0006654939,0.19895975,0.0013724293,0.000015900961,0.0000025850832,0.000004163898,0.000001282829,0.000017870112,0.797394,0.00023278683],"about_ca_topic_score_codex":0.0000054196944,"about_ca_topic_score_gemma":0.0000013320387,"teacher_disagreement_score":0.7964673,"about_ca_system_score_codex":0.0002321253,"about_ca_system_score_gemma":0.00037689297,"threshold_uncertainty_score":0.99989176},"labels":[],"label_agreement":null},{"id":"W2061419883","doi":"10.1016/s1473-3099(07)70191-3","title":"Capsule switching and capsule replacement in vaccine-preventable bacterial diseases","year":2007,"lang":"en","type":"letter","venue":"The Lancet Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Neisseria meningitidis; Scopus; Conjugate vaccine; Bacterial capsule; Meningococcal vaccine; Microbiology; Medicine; Haemophilus influenzae; Virology; Immune system; Immunology; Biology; Immunization; Bacteria; MEDLINE; Antibiotics","score_opus":0.016416416203082602,"score_gpt":0.2833003899638526,"score_spread":0.26688397376077,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061419883","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.81895,0.002443367,0.000031769294,0.17078818,0.001921839,0.0018348473,0.00054271246,0.0005724807,0.0029148085],"genre_scores_gemma":[0.47394526,0.0011820892,0.0000058401415,0.5042296,0.017941758,0.00040588775,0.00073329575,0.00016596676,0.0013902875],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99740535,0.00024777776,0.0005410868,0.00060923665,0.00039594795,0.00080061366],"domain_scores_gemma":[0.9983892,0.0001774683,0.00025376628,0.0008886579,0.0000742337,0.00021670536],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00025942313,0.00051358395,0.0010303366,0.00034753687,0.00035066484,0.00012999521,0.00018857859,0.00037069223,0.00035069467],"category_scores_gemma":[0.00023608028,0.00036328408,0.00023602441,0.00033114885,0.00008810453,0.00013901327,0.0001594223,0.0013985517,0.000055051303],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018457176,0.0004397653,0.18647896,0.0009303707,0.00037907937,0.0007551677,0.00013190004,0.00001870192,0.00229425,0.000015207141,0.80736464,0.0010073879],"study_design_scores_gemma":[0.00541819,0.00048248688,0.23184632,0.0007110092,0.0013139733,0.00039000114,0.00004943618,0.000031458945,0.0001441834,0.00045593036,0.7584951,0.00066192605],"about_ca_topic_score_codex":0.00048477371,"about_ca_topic_score_gemma":0.0001983038,"teacher_disagreement_score":0.34500474,"about_ca_system_score_codex":0.0003110098,"about_ca_system_score_gemma":0.00025672474,"threshold_uncertainty_score":0.9998819},"labels":[],"label_agreement":null},{"id":"W2061688298","doi":"10.1016/j.provac.2009.07.012","title":"Simulation model for comparing the costs and effectiveness of different pneumococcal conjugate vaccines","year":2009,"lang":"en","type":"article","venue":"Procedia in Vaccinology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; Université de Sherbrooke; Université Laval","funders":"Centers for Disease Control and Prevention","keywords":"Pneumococcal conjugate vaccine; Conjugate; Pneumococcal disease; Virology; Medicine; Microbiology; Biology; Streptococcus pneumoniae; Mathematics","score_opus":0.0320820607987767,"score_gpt":0.32019866363575195,"score_spread":0.28811660283697527,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061688298","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951829,0.00010602396,0.002981826,0.0005637951,0.00007800077,0.0009848367,0.0000018298304,0.000029811068,0.00007100688],"genre_scores_gemma":[0.9996678,0.000025220657,0.000021604432,0.00013212507,0.00004014715,0.00009499502,0.0000049402975,0.000007978301,0.0000051367606],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993066,0.000051974217,0.00023271632,0.00018025888,0.000049118466,0.00017933505],"domain_scores_gemma":[0.9990502,0.0006199126,0.000071110364,0.0001195969,0.00009875914,0.00004043175],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015670678,0.0001151941,0.00034378862,0.000116753865,0.00005927509,0.0000051292836,0.000050463008,0.000103861,0.0000012129857],"category_scores_gemma":[0.0002562856,0.000074679316,0.000044208864,0.000092362694,0.000026365908,0.00004215023,0.00002025726,0.00014346169,5.735763e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005407041,0.00022184318,0.8785412,0.0002650217,0.000029310057,0.0000014116554,0.00022127428,0.01996612,0.095999114,0.0020990884,0.0000020123011,0.0021129183],"study_design_scores_gemma":[0.0016378843,0.00031865572,0.6483674,0.000056651035,0.000039267827,0.0000123810405,0.000013717939,0.34519833,0.0025606796,0.0017352122,0.000008430194,0.000051403153],"about_ca_topic_score_codex":0.000004107637,"about_ca_topic_score_gemma":0.000030798452,"teacher_disagreement_score":0.3252322,"about_ca_system_score_codex":0.00004360562,"about_ca_system_score_gemma":0.000032698874,"threshold_uncertainty_score":0.30453342},"labels":[],"label_agreement":null},{"id":"W2061768488","doi":"10.1128/jb.01991-07","title":"Mutations in the<i>tacF</i>Gene of Clinical Strains and Laboratory Transformants of<i>Streptococcus pneumoniae:</i>Impact on Choline Auxotrophy and Growth Rate","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; National Institute of Dental and Craniofacial Research; Dirección General de Investigación Científica y Técnica; European Bioinformatics Institute; Microsoft","keywords":"Biology; Teichoic acid; Streptococcus pneumoniae; Mutant; Phosphocholine; Microbiology; Choline; Auxotrophy; Streptococcus mitis; Gene; Bacteria; Biochemistry; Genetics; Streptococcus; Peptidoglycan; Phospholipid","score_opus":0.03514314789896591,"score_gpt":0.34579771134254494,"score_spread":0.31065456344357906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061768488","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99870205,0.00009579637,0.000017238093,0.00075617374,0.000113322676,0.00016683128,0.000060752045,0.000002997579,0.00008485538],"genre_scores_gemma":[0.9984887,0.0009824745,0.00002965088,0.00034387258,0.0001376788,0.0000027224235,0.000003114818,0.0000081555645,0.000003617619],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99839133,0.0003232009,0.0009343002,0.00010437693,0.00010595672,0.00014082459],"domain_scores_gemma":[0.9988576,0.00026767908,0.0004569205,0.00010030382,0.00019915147,0.000118311225],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006613986,0.0001228068,0.0006388523,0.00024792194,0.00005068434,0.000003240482,0.00006571168,0.0001331165,0.000011317299],"category_scores_gemma":[0.00018835225,0.000072326606,0.00014737462,0.00019151112,0.00041734093,0.00009447846,0.000008049866,0.00045354126,6.6887355e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032411114,0.00047182446,0.52738,0.000046605637,0.00013578498,0.00022177864,0.0008149341,0.000028844119,0.46975088,0.000033105145,0.000024676649,0.0007674839],"study_design_scores_gemma":[0.002416352,0.0038617474,0.9897034,0.00006259853,0.00008271105,0.000985928,0.000070206275,0.000013138501,0.0025026684,0.00003856016,0.00020634875,0.00005634665],"about_ca_topic_score_codex":0.000007607443,"about_ca_topic_score_gemma":0.0000057159327,"teacher_disagreement_score":0.46724823,"about_ca_system_score_codex":0.000013748647,"about_ca_system_score_gemma":0.00028447455,"threshold_uncertainty_score":0.29493934},"labels":[],"label_agreement":null},{"id":"W2061891693","doi":"10.1111/j.1600-6143.2006.01705.x","title":"Invasive Pneumococcal Disease in Solid Organ Transplant Recipients—10-Year Prospective Population Surveillance","year":2007,"lang":"en","type":"article","venue":"American Journal of Transplantation","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":129,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University; St. Michael's Hospital; Mount Sinai Hospital; University of Toronto","funders":"","keywords":"Medicine; Population; Incidence (geometry); Streptococcus pneumoniae; Internal medicine; Serotype; Prospective cohort study; Trimethoprim; Pneumococcal infections; Transplantation; Sulfamethoxazole; Immunology; Antibiotics; Microbiology; Biology; Environmental health","score_opus":0.007026448246092535,"score_gpt":0.2784482960421226,"score_spread":0.27142184779603007,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061891693","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99685866,0.000019150635,0.002120518,0.00037654946,0.00018693943,0.00023839882,0.0000287765,0.000017863813,0.0001531488],"genre_scores_gemma":[0.99922824,0.0002755835,0.00013270802,0.00011654515,0.00015389085,0.0000036523968,0.000048571386,0.000018769804,0.000022050184],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986179,0.00009400936,0.00058170065,0.00016002424,0.00031859076,0.00022781438],"domain_scores_gemma":[0.99898124,0.00014286661,0.00033416957,0.00009692203,0.00019620713,0.00024859924],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042903156,0.00013873026,0.00034505484,0.00039833647,0.00006177478,0.000011455312,0.00006221032,0.00004054833,0.000037362304],"category_scores_gemma":[0.0000639041,0.00011788493,0.00012233802,0.00051070505,0.000097858945,0.00018545036,0.000001879773,0.00026745806,0.000009537354],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002556786,0.00020382203,0.9610923,0.000042256477,0.000049327537,0.00052795245,0.0012230471,0.00023696832,0.03211516,0.000021991136,0.000002640343,0.0019277333],"study_design_scores_gemma":[0.0017757424,0.0009215126,0.9937647,0.00032866877,0.000112877526,0.00038860977,0.00023655298,0.000014074108,0.0022601744,0.00004839509,0.000025774116,0.00012291424],"about_ca_topic_score_codex":0.0000726072,"about_ca_topic_score_gemma":0.00028722806,"teacher_disagreement_score":0.03267239,"about_ca_system_score_codex":0.00017495648,"about_ca_system_score_gemma":0.00015136585,"threshold_uncertainty_score":0.48072076},"labels":[],"label_agreement":null},{"id":"W2061928005","doi":"10.1016/j.ygeno.2008.09.008","title":"Transcriptome studies on Streptococcus pneumoniae, illustration of early response genes to THP-1 human macrophages","year":2008,"lang":"en","type":"article","venue":"Genomics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Saskatchewan","funders":"","keywords":"Biology; Locus (genetics); Gene; Streptococcus pneumoniae; Mutant; Transcriptome; Microbiology; Genetics; Phenotype; THP1 cell line; Mutagenesis; Gene expression; Molecular biology; Bacteria; Cell culture","score_opus":0.07837863396227376,"score_gpt":0.33624040270052574,"score_spread":0.25786176873825195,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061928005","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979487,0.00020127435,0.000021324211,0.000711676,0.00024710788,0.00053557195,0.000037054655,0.000061080194,0.00023619493],"genre_scores_gemma":[0.99797004,0.00014058007,0.000057264908,0.00039414398,0.00016283587,0.000045789766,0.000004237166,0.000025397985,0.0011996856],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989345,0.000078159144,0.0003716967,0.0002393669,0.00017560013,0.00020065212],"domain_scores_gemma":[0.99926084,0.000059541737,0.00009071939,0.00031701592,0.00014581854,0.00012605592],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018605766,0.00016526051,0.00032067377,0.0002248879,0.00024879133,0.0000073719616,0.0000793856,0.00008648074,0.000015023902],"category_scores_gemma":[0.00005331264,0.00014268886,0.00012176436,0.00019890328,0.00014152097,0.000044604243,0.00001948533,0.00014012099,0.000057007353],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031227735,0.00013773255,0.01546752,0.00003044734,0.000113347574,0.000068098416,0.0038470447,0.00036721118,0.9789498,0.000101311,0.00017501613,0.00043018514],"study_design_scores_gemma":[0.0012402305,0.0044285585,0.65741366,0.00007951966,0.0001214063,0.00007740588,0.00080691255,0.0000069511275,0.32074904,0.000047176043,0.014758342,0.0002707606],"about_ca_topic_score_codex":0.000011648167,"about_ca_topic_score_gemma":0.000022649776,"teacher_disagreement_score":0.65820074,"about_ca_system_score_codex":0.00011851935,"about_ca_system_score_gemma":0.0001240238,"threshold_uncertainty_score":0.5818683},"labels":[],"label_agreement":null},{"id":"W2062136993","doi":"10.1093/jac/dkv107","title":"Characterization of MDR and XDR <i>Streptococcus pneumoniae</i> in Canada, 2007–13","year":2015,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Shared Health; Health Sciences Centre; Public Health Agency of Canada; University of Manitoba","funders":"","keywords":"Microbiology; Multilocus sequence typing; Streptococcus pneumoniae; Biology; Pneumococcal infections; Antibiotic resistance; Molecular epidemiology; Trimethoprim; Sulfamethoxazole; Penicillin; Clindamycin; Virology; Antibiotics; Genotype; Genetics; Gene","score_opus":0.011677530538532292,"score_gpt":0.23393015776220227,"score_spread":0.22225262722366998,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2062136993","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99581844,0.00003337422,0.00004087066,0.0034497571,0.000315815,0.00013451412,0.0000100158895,0.0000035109933,0.00019368019],"genre_scores_gemma":[0.9968414,0.00029922268,0.000031068474,0.0025587939,0.00018282072,6.036558e-7,0.0000028240997,0.000015022591,0.00006828875],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99911284,0.000029469658,0.00046970134,0.000082815284,0.00017046694,0.00013468877],"domain_scores_gemma":[0.99918514,0.000014619496,0.00034341466,0.00009147343,0.00021991019,0.0001454228],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017290763,0.00010470171,0.0003610936,0.00014289154,0.000018036486,0.000008836842,0.000054610326,0.00006220599,0.000025680192],"category_scores_gemma":[0.000023314162,0.000085302534,0.00005822144,0.0001640154,0.00004389529,0.00010513095,0.000008210151,0.00019170535,8.990966e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000096701275,0.00009657951,0.18898967,0.000025964977,0.00003246427,0.00003963967,0.00016194182,0.000009134263,0.8078938,0.0000013705284,0.001773124,0.00087961624],"study_design_scores_gemma":[0.006807481,0.0005770397,0.4256146,0.00039384695,0.00005857376,0.0010045136,0.00013898572,0.00004020665,0.5190494,0.000012167579,0.04610017,0.00020297717],"about_ca_topic_score_codex":0.011887272,"about_ca_topic_score_gemma":0.017780282,"teacher_disagreement_score":0.28884438,"about_ca_system_score_codex":0.00016771417,"about_ca_system_score_gemma":0.0012835544,"threshold_uncertainty_score":0.9946927},"labels":[],"label_agreement":null},{"id":"W2062449054","doi":"10.1016/j.clim.2006.10.012","title":"Prevalence of Toll-like receptor signalling defects in apparently healthy children who developed invasive pneumococcal infection","year":2006,"lang":"en","type":"article","venue":"Clinical Immunology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; University of British Columbia; BC Children's Hospital","funders":"Canadian Institutes of Health Research; Canadian Child Health Clinician Scientist Program","keywords":"Toll; Toll-like receptor; Signalling; Pneumococcal disease; Immunology; Medicine; Streptococcus pneumoniae; Biology; Immune system; Innate immune system; Genetics; Bacteria","score_opus":0.03709141165072553,"score_gpt":0.3389400721197139,"score_spread":0.30184866046898834,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2062449054","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99716175,0.00041780615,0.00016894496,0.00039665273,0.0007611714,0.0006617799,0.000008353056,0.00007483667,0.0003486983],"genre_scores_gemma":[0.99728817,0.001634043,0.00008075983,0.0004668544,0.00022085354,0.000059956765,0.000030916235,0.000022372185,0.00019606351],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9973965,0.00043493352,0.0012390369,0.0004408915,0.00011317818,0.00037542288],"domain_scores_gemma":[0.9984276,0.00067125965,0.00034244687,0.00029988211,0.00016778846,0.00009097364],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005344049,0.00019521211,0.00065580785,0.00025649753,0.00009038876,0.000006686952,0.00011902334,0.00046526204,0.00008888726],"category_scores_gemma":[0.00075965223,0.00017702815,0.00021098382,0.00040194372,0.00038442682,0.0000859079,0.00008281453,0.0007333116,0.00009646763],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024790043,0.00078204833,0.93446517,0.0001259569,0.00009437923,0.000009659058,0.00003111938,0.000039519848,0.0627741,0.00011761717,0.00012406525,0.0011884393],"study_design_scores_gemma":[0.0021649972,0.0016231874,0.9911869,0.00029169564,0.000084024825,0.00007166955,0.000007820022,0.000015329051,0.0035612173,0.00013919988,0.0006980471,0.00015588946],"about_ca_topic_score_codex":0.0002375542,"about_ca_topic_score_gemma":0.00028717978,"teacher_disagreement_score":0.059212886,"about_ca_system_score_codex":0.0001080499,"about_ca_system_score_gemma":0.00047699388,"threshold_uncertainty_score":0.72189987},"labels":[],"label_agreement":null},{"id":"W2062504644","doi":"10.1097/00006454-200109000-00006","title":"Identification and quantification of ureaplasmas colonizing the respiratory tract and assessment of their role in the development of chronic lung disease in preterm infants","year":2001,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Ureaplasma urealyticum; Medicine; Ureaplasma; Mycoplasmataceae; Respiratory disease; Respiratory tract; Respiratory system; Lung; Bronchopulmonary dysplasia; Internal medicine; Mycoplasma; Pregnancy; Physiology; Mollicutes; Microbiology; Gestational age; Biology","score_opus":0.018987508954574007,"score_gpt":0.3057640340890173,"score_spread":0.2867765251344433,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2062504644","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99638987,0.0022804409,0.00018329712,0.0003710651,0.00008189325,0.00061021134,0.000008793754,0.000005944539,0.00006851041],"genre_scores_gemma":[0.9984657,0.0013057129,0.0000039366323,0.000042975462,0.00011871849,0.00004864289,0.0000018944421,0.000009286214,0.0000031204956],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983641,0.0003544457,0.0007022035,0.0001326374,0.00029186733,0.00015473987],"domain_scores_gemma":[0.99865717,0.0003209931,0.00054781616,0.00025820915,0.00011754245,0.000098263896],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015647303,0.000121179284,0.00020157902,0.00029669254,0.00023738955,0.000027986081,0.000116358315,0.00004327573,0.000006195709],"category_scores_gemma":[0.00018587217,0.000064182175,0.000066621724,0.00047130024,0.00013369936,0.00012196971,0.000030768813,0.00035502677,2.4329066e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000090203015,0.0004929406,0.9905197,0.00017387967,0.000029989076,0.0000060248954,0.0014383398,0.000415577,0.0048899576,0.00006190941,0.00000622495,0.0018752576],"study_design_scores_gemma":[0.0008785945,0.000081512386,0.99467546,0.0000814823,0.00025781046,0.00005906752,0.00031454582,0.003218758,0.00009037665,0.0002131148,0.000065039814,0.000064239306],"about_ca_topic_score_codex":0.000012620665,"about_ca_topic_score_gemma":0.00006321861,"teacher_disagreement_score":0.0047995807,"about_ca_system_score_codex":0.000121102945,"about_ca_system_score_gemma":0.0008487052,"threshold_uncertainty_score":0.2617273},"labels":[],"label_agreement":null},{"id":"W2063109352","doi":"10.1016/j.vaccine.2009.12.026","title":"The effect of routine vaccination on invasive pneumococcal infections in Canadian children, Immunization Monitoring Program, Active 2000–2007","year":2009,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":110,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta; BC Children's Hospital; Dalhousie University; Public Health Agency of Canada; Alberta Children's Hospital; University of Calgary; Stollery Children's Hospital; University of British Columbia","funders":"Public Health Agency of Canada","keywords":"Vaccination; Immunization; Medicine; Pneumococcal infections; Pneumococcal vaccination; Active immunization; Streptococcus pneumoniae; Pediatrics; Immunization program; Pneumococcal disease; Immunology; Virology; Biology; Antibody; Antibiotics; Microbiology","score_opus":0.005690688956311005,"score_gpt":0.2776536161180653,"score_spread":0.2719629271617543,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063109352","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954384,0.0001013909,0.000005529444,0.0016199417,0.00027538478,0.0013893648,0.0000061082624,0.0000733225,0.0010905658],"genre_scores_gemma":[0.99935806,0.00013975149,0.0000046958894,0.000059661466,0.0002355291,0.00008611901,0.00003923474,0.000016415903,0.000060536408],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988583,0.00012910251,0.00031566925,0.00019325258,0.00015291772,0.000350809],"domain_scores_gemma":[0.9990735,0.00020766439,0.00011939201,0.00028699447,0.00014273304,0.00016972961],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027898746,0.00017916848,0.00025614325,0.00047813755,0.00029577714,0.000021611793,0.000083985055,0.00012858043,0.000025104042],"category_scores_gemma":[0.0005409374,0.0001245573,0.00008393015,0.00090175465,0.000008012016,0.000109395354,0.000011389748,0.00037152309,0.000017573757],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014170023,0.00023689185,0.9287635,0.000013573139,0.000053886564,0.000007003202,0.00011144471,0.00032721058,0.011101612,0.00006297001,0.000043302935,0.059136875],"study_design_scores_gemma":[0.0019392499,0.0035543374,0.9689528,0.00012571343,0.00005928003,0.000044019787,0.00002028621,0.000075014475,0.024347227,0.000017267063,0.0007641635,0.0001006815],"about_ca_topic_score_codex":0.009643521,"about_ca_topic_score_gemma":0.019222436,"teacher_disagreement_score":0.059036195,"about_ca_system_score_codex":0.00051976455,"about_ca_system_score_gemma":0.00026849698,"threshold_uncertainty_score":0.9986742},"labels":[],"label_agreement":null},{"id":"W2063392571","doi":"10.1016/j.micpath.2007.09.007","title":"Vaccine-induced human antibodies to PspA augment complement C3 deposition on Streptococcus pneumoniae","year":2007,"lang":"en","type":"article","venue":"Microbial Pathogenesis","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Antibody opsonization; Streptococcus pneumoniae; Microbiology; Antibody; Biology; Humoral immunity; Immune system; Virulence; Complement system; Pneumococcal infections; Virulence factor; Immunity; Streptococcaceae; Serotype; Virology; Immunology; Gene; Opsonin; Antibiotics","score_opus":0.02918206385419647,"score_gpt":0.32262765617077616,"score_spread":0.2934455923165797,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063392571","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954979,0.000015940217,0.00045918068,0.0010851853,0.00046584225,0.0011824712,0.000068355286,0.00016809664,0.0010570666],"genre_scores_gemma":[0.9965471,0.0000048971306,0.00016862074,0.0023893537,0.00049556,0.00005102273,0.00008090518,0.00004716978,0.00021535788],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99809843,0.000062334424,0.0005338124,0.0004943013,0.00026732282,0.0005438059],"domain_scores_gemma":[0.99894375,0.000035294273,0.000113060945,0.00044523776,0.00014234001,0.0003203431],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003115906,0.0003157993,0.0003931884,0.00039616658,0.0004977679,0.00003813002,0.000111059286,0.00012913122,0.00013849646],"category_scores_gemma":[0.000020173478,0.00028511285,0.00021083416,0.0003298659,0.000019416437,0.00004288265,0.00007455224,0.00016779656,0.00028199953],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000072645336,0.00053402386,0.03126454,0.000047459984,0.000077411234,0.00015626685,0.00016575561,0.00002591296,0.9600731,0.000044625704,0.0010037888,0.006534447],"study_design_scores_gemma":[0.0010651139,0.0011466246,0.41774917,0.00014103341,0.00012547873,0.000053928266,0.000095857395,0.0000023893442,0.5708382,0.000004077646,0.008509722,0.00026840167],"about_ca_topic_score_codex":0.00008459062,"about_ca_topic_score_gemma":0.00061143143,"teacher_disagreement_score":0.38923493,"about_ca_system_score_codex":0.00030645513,"about_ca_system_score_gemma":0.00005371772,"threshold_uncertainty_score":0.9999601},"labels":[],"label_agreement":null},{"id":"W2063428853","doi":"10.1016/j.ijid.2010.09.011","title":"The obesity paradox in community-acquired bacterial pneumonia","year":2010,"lang":"en","type":"article","venue":"International Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":113,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; University of Ottawa","funders":"World Health Organization; U.S. Department of Veterans Affairs","keywords":"Medicine; Underweight; Body mass index; Overweight; Pneumonia; Confidence interval; Odds ratio; Obesity; Community-acquired pneumonia; Internal medicine; Obesity paradox; Bacterial pneumonia","score_opus":0.008218241550419503,"score_gpt":0.2877731172923603,"score_spread":0.2795548757419408,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063428853","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99283963,0.000049683964,0.000022100367,0.0016884577,0.0042400025,0.00010010411,0.00001512228,0.000025661084,0.0010192144],"genre_scores_gemma":[0.99845123,0.000110157416,0.0000056477384,0.00041408863,0.00095913594,0.000007116723,0.0000055214855,0.000011590876,0.000035535337],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988216,0.00016030301,0.00044740518,0.000067277,0.00035705813,0.00014636751],"domain_scores_gemma":[0.998538,0.00034683285,0.00026987764,0.00018757935,0.0004995954,0.00015811175],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034649746,0.00011244553,0.0001983285,0.00022274508,0.00024374887,0.00010303609,0.00027648994,0.000068214074,0.00013702583],"category_scores_gemma":[0.0008185224,0.00007492731,0.00020802526,0.00012458435,0.00017227646,0.00018597106,0.00005626089,0.00060298125,0.000018179024],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022468563,0.0012232541,0.8994675,0.00000873373,0.00021352991,0.00020490719,0.00015403568,0.000022733666,0.094347104,0.00038780825,0.00041632634,0.0033293345],"study_design_scores_gemma":[0.0017841957,0.00031506637,0.97881794,0.00006979169,0.000064546,0.0013490943,0.0001256507,0.000020498122,0.00064391835,0.0011801806,0.0155441845,0.00008496102],"about_ca_topic_score_codex":0.00006447173,"about_ca_topic_score_gemma":0.00038490558,"teacher_disagreement_score":0.09370319,"about_ca_system_score_codex":0.00010926477,"about_ca_system_score_gemma":0.00025902645,"threshold_uncertainty_score":0.30554467},"labels":[],"label_agreement":null},{"id":"W2063561549","doi":"10.1021/pr900103y","title":"<i>Streptococcus pneumoniae</i>and<i>Staphylococcus aureus</i>Pneumonia Induce Distinct Metabolic Responses","year":2009,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":107,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Streptococcus pneumoniae; Staphylococcus aureus; Microbiology; Pneumonia; Biology; Medicine; Bacteria; Antibiotics","score_opus":0.06372937391900164,"score_gpt":0.39175942540768893,"score_spread":0.3280300514886873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063561549","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9793502,0.0018205384,0.00004796169,0.015845615,0.00016501552,0.0011388261,0.000012283835,0.00004775649,0.0015717909],"genre_scores_gemma":[0.99692017,0.00056085247,0.00018843207,0.000401435,0.00087169016,0.0000513371,0.0000012726517,0.000035857895,0.0009689735],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9955753,0.000743243,0.00092383585,0.0003708985,0.0015621998,0.00082451606],"domain_scores_gemma":[0.9965496,0.0003956071,0.0003599307,0.0005316616,0.0013524805,0.00081069727],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0036720564,0.00029781213,0.0007819907,0.0013765964,0.0004885442,0.00014742503,0.0003475219,0.00024835364,0.000091946],"category_scores_gemma":[0.0017554539,0.00021443052,0.00031085566,0.0011198455,0.00037785934,0.00032982405,0.00010927809,0.002427758,0.00006946138],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003844752,0.0004865083,0.039230365,0.00007047468,0.000121811405,0.0007891772,0.00025417717,0.000001901042,0.9488023,0.00020435567,0.00078982086,0.008864647],"study_design_scores_gemma":[0.0025205705,0.005308725,0.80919015,0.00043455957,0.00015310559,0.0015911575,0.0002279037,0.000019542364,0.058130816,0.0015644296,0.120531864,0.00032714254],"about_ca_topic_score_codex":0.000011826509,"about_ca_topic_score_gemma":0.0000046203995,"teacher_disagreement_score":0.8906715,"about_ca_system_score_codex":0.00015405395,"about_ca_system_score_gemma":0.0010056534,"threshold_uncertainty_score":0.9998737},"labels":[],"label_agreement":null},{"id":"W2063648003","doi":"10.1155/2013/549649","title":"Chlamydial Pneumonitis: A Creepy Neonatal Disease","year":2013,"lang":"en","type":"article","venue":"Case Reports in Pediatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Children's Hospital; University of Calgary","funders":"","keywords":"Medicine; Asymptomatic; Abnormality; Pneumonitis; Respiratory system; Intensive care medicine; Pediatrics; Internal medicine; Lung","score_opus":0.010567464501919404,"score_gpt":0.2580814464179705,"score_spread":0.2475139819160511,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063648003","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99486107,0.000590919,0.000079323436,0.0006292694,0.0008676894,0.000616594,0.000010955984,0.00012926181,0.0022149337],"genre_scores_gemma":[0.9975369,0.00015768614,0.000071473034,0.0004821113,0.0009793704,0.00016788818,0.000021561902,0.000031533724,0.00055144913],"study_design_codex":"case_report","study_design_gemma":"observational","domain_scores_codex":[0.9984321,0.000035496763,0.00053885224,0.00036286365,0.00028090226,0.0003497726],"domain_scores_gemma":[0.9985797,0.00007576987,0.0001509545,0.00048087424,0.00016249846,0.00055021886],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017427532,0.00018270439,0.00025084274,0.00033446206,0.00011217352,0.000040513212,0.00002690824,0.00013015601,0.00028893398],"category_scores_gemma":[0.0006325513,0.00016395768,0.00014479467,0.00049776415,0.00007259973,0.00018190905,0.000052921838,0.0003248452,0.000107038744],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009288856,0.00018136535,0.49226767,0.00010018373,0.000009822915,0.5011588,0.00009229313,0.0000195211,0.00023065666,0.000026489699,0.0013725018,0.004531428],"study_design_scores_gemma":[0.0013345467,0.0001998129,0.53519845,0.0000697083,0.0004120076,0.42578703,0.0002795822,0.00031986035,0.00007943888,0.0008021125,0.03488888,0.0006285646],"about_ca_topic_score_codex":0.00015113376,"about_ca_topic_score_gemma":0.000024579893,"teacher_disagreement_score":0.075371735,"about_ca_system_score_codex":0.00011434662,"about_ca_system_score_gemma":0.00038232293,"threshold_uncertainty_score":0.6686},"labels":[],"label_agreement":null},{"id":"W2063763993","doi":"10.1086/426822","title":"Fluoroquinolone-Resistant Pneumococci: Maybe Resistance Isn't Futile?","year":2004,"lang":"en","type":"letter","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; University Health Network; Mount Sinai Hospital","funders":"","keywords":"Medicine; Levofloxacin; Ciprofloxacin; Sri lanka; Streptococcus pneumoniae; Veterinary medicine; Microbiology; Antibiotics; South asia; Biology","score_opus":0.036067046973580354,"score_gpt":0.3444412204529454,"score_spread":0.308374173479365,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063763993","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.04064114,0.006114193,0.00012379364,0.8880905,0.011496375,0.003924155,0.0019079582,0.0037626317,0.043939266],"genre_scores_gemma":[0.05677767,0.0015606738,0.00001633013,0.8959093,0.020099103,0.00051530934,0.0009678206,0.00035534034,0.023798423],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9939843,0.0004969426,0.0019440348,0.0015952914,0.00083751505,0.001141963],"domain_scores_gemma":[0.9951172,0.0009769695,0.00075238023,0.0018827312,0.0004707452,0.0007999663],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.00029023655,0.0009839708,0.0020670183,0.00046005443,0.0005515296,0.00015404243,0.00039454977,0.002377511,0.0011331708],"category_scores_gemma":[0.0015594952,0.00086225313,0.0021069702,0.0006109876,0.0010981831,0.00014941301,0.00018208034,0.0045960774,0.0014755294],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010273239,0.0012820647,0.026227105,0.0012068988,0.00080467254,0.0046707797,0.000017603528,0.0000051024763,0.00016212735,0.000118045966,0.9646931,0.0007097321],"study_design_scores_gemma":[0.00246948,0.0010598026,0.107966416,0.0011153952,0.001913547,0.000079733865,0.000010460185,0.0000015383524,0.000014718252,0.001563276,0.88295394,0.00085167465],"about_ca_topic_score_codex":0.000028155793,"about_ca_topic_score_gemma":0.00004693996,"teacher_disagreement_score":0.081739314,"about_ca_system_score_codex":0.0006303085,"about_ca_system_score_gemma":0.0017843657,"threshold_uncertainty_score":0.99977994},"labels":[],"label_agreement":null},{"id":"W2064440758","doi":"10.1016/j.febslet.2005.08.066","title":"1.2 Å crystal structure of the <i>S. pneumoniae</i> PhtA histidine triad domain a novel zinc binding fold","year":2005,"lang":"en","type":"article","venue":"FEBS Letters","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Histidine; Triad (sociology); Zinc; Fold (higher-order function); Chemistry; Crystal structure; Crystallography; Biochemistry; Amino acid; Computer science; Organic chemistry","score_opus":0.012157107990665973,"score_gpt":0.23873482231169946,"score_spread":0.2265777143210335,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064440758","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95507884,0.00003938763,0.00023251666,0.043062232,0.0005014924,0.0003451638,0.00009349762,0.00006338289,0.0005834786],"genre_scores_gemma":[0.98845816,0.0000038480357,0.00028756502,0.010248509,0.0005900265,0.000007971552,0.000009333053,0.000031920317,0.00036267153],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99875116,0.00004161372,0.000340525,0.00024210528,0.00032210367,0.00030250638],"domain_scores_gemma":[0.9991929,0.000056443212,0.00017332761,0.00042993293,0.000041828655,0.00010559596],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000100943944,0.00019661649,0.0003089382,0.00012697777,0.00018144016,0.000015482496,0.00016922837,0.000107053056,0.000107432636],"category_scores_gemma":[0.00006798586,0.00012984207,0.00023600389,0.0003502427,0.00014936413,0.000081935235,0.00006178495,0.00035412327,0.000017858034],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030451649,0.00008541342,0.008728722,0.000038882128,0.000073476585,0.000007922449,0.00016616506,0.000090939815,0.9834906,0.00010953718,0.006989712,0.00018822044],"study_design_scores_gemma":[0.0076436987,0.00029084302,0.043330755,0.00038895503,0.00044522318,0.0008953982,0.00015040408,0.00009506151,0.2454495,0.000043879518,0.70069754,0.0005687645],"about_ca_topic_score_codex":0.000019105293,"about_ca_topic_score_gemma":0.000038142174,"teacher_disagreement_score":0.73804104,"about_ca_system_score_codex":0.00015653973,"about_ca_system_score_gemma":0.00007405389,"threshold_uncertainty_score":0.5294806},"labels":[],"label_agreement":null},{"id":"W2065035332","doi":"10.1016/j.jval.2014.03.1009","title":"Economic Impact Of Alberta’s Pcv7 Childhood Immunization Program (2003-2008)","year":2014,"lang":"en","type":"article","venue":"Value in Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary; University of Alberta; Institute of Health Economics","funders":"","keywords":"Herd immunity; Vaccination; Medicine; Population; Environmental health; Incidence (geometry); Economic impact analysis; Disease burden; Demography; Immunology; Economics","score_opus":0.015383546183351105,"score_gpt":0.31791061161648443,"score_spread":0.30252706543313335,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2065035332","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99566936,0.00012056359,0.00004096484,0.00090304343,0.0002342688,0.0007153313,0.0000044147855,0.000044801614,0.0022672482],"genre_scores_gemma":[0.99918586,0.00012691022,0.00017452295,0.00024835186,0.000113092115,0.000024530671,0.000025019019,0.000018767232,0.00008292816],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989788,0.00014937251,0.0004079849,0.00014590246,0.00006974774,0.00024822002],"domain_scores_gemma":[0.99932444,0.000057746518,0.00015451257,0.0002754817,0.000046605022,0.00014118357],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034224437,0.00010072564,0.00029126144,0.00018857772,0.000056575325,0.0000059346517,0.00005126118,0.00007498156,0.000060164122],"category_scores_gemma":[0.0001779757,0.000082368984,0.0000743061,0.00028073852,0.00003635009,0.000049592534,0.000012499763,0.00015863797,0.000047151087],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004619216,0.0013468734,0.9097372,0.00037630956,0.00010329487,0.0000016631623,0.0019844614,0.0343839,0.0007733505,0.002180457,0.0011090272,0.047957253],"study_design_scores_gemma":[0.001336872,0.002369378,0.97037125,0.00023163353,0.000013859039,0.000049042123,0.000025075906,0.015083215,0.00009900262,0.00010377337,0.010213142,0.00010375615],"about_ca_topic_score_codex":0.018792748,"about_ca_topic_score_gemma":0.00032460262,"teacher_disagreement_score":0.060634036,"about_ca_system_score_codex":0.00039086724,"about_ca_system_score_gemma":0.0011739946,"threshold_uncertainty_score":0.9877412},"labels":[],"label_agreement":null},{"id":"W2065383813","doi":"10.1001/archinternmed.2009.259","title":"Guideline-Concordant Therapy and Reduced Mortality and Length of Stay in Adults With Community-Acquired Pneumonia","year":2009,"lang":"en","type":"article","venue":"Archives of Internal Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":203,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Medicine; Guideline; Community-acquired pneumonia; Concordance; Odds ratio; Pneumonia; Intensive care unit; Confidence interval; Intensive care medicine; Discontinuation; Internal medicine; Emergency medicine","score_opus":0.032443174077055346,"score_gpt":0.3235768343570557,"score_spread":0.2911336602800004,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2065383813","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951714,0.00049232924,0.00009345513,0.0016594904,0.000039595976,0.00025942712,0.0000069087405,0.000013707177,0.0022636845],"genre_scores_gemma":[0.9979084,0.0009155015,0.00028336677,0.00078980875,0.00005506341,0.0000040736386,0.000006529003,0.000008925875,0.000028323744],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988672,0.00013141581,0.0005494916,0.00014535747,0.00016903582,0.00013745956],"domain_scores_gemma":[0.9991473,0.00021277438,0.00019018265,0.0002671589,0.000059200163,0.00012339759],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002533867,0.00014852104,0.00049330073,0.00022208222,0.00003708874,0.0000019229244,0.00008885322,0.00003114497,0.000009411822],"category_scores_gemma":[0.00011876205,0.000091537484,0.00003272102,0.00010628023,0.00060835114,0.000045543613,0.000028326054,0.0002457774,9.73762e-8],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018108507,0.00033713883,0.25124517,0.00014369495,0.00013076438,0.000047415877,0.007144554,0.0000022123252,0.6998254,0.0001284395,0.000014713045,0.039169643],"study_design_scores_gemma":[0.005676775,0.0075469567,0.97123903,0.0028997618,0.000047168094,0.00019427406,0.0015220579,0.00026857585,0.009837955,0.0004894658,0.00018869154,0.00008927577],"about_ca_topic_score_codex":0.0015609193,"about_ca_topic_score_gemma":0.00022879905,"teacher_disagreement_score":0.7199939,"about_ca_system_score_codex":0.000008139003,"about_ca_system_score_gemma":0.00004126543,"threshold_uncertainty_score":0.37327904},"labels":[],"label_agreement":null},{"id":"W2065437582","doi":"10.1046/j.1525-1497.2000.04429.x","title":"Clinical presentation, processes and outcomes of care for patients with pneumococcal pneumonia","year":2000,"lang":"en","type":"article","venue":"Journal of General Internal Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":81,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Victoria General Hospital; Dalhousie University","funders":"Agency for Healthcare Research and Quality","keywords":"Medicine; Pneumonia; Etiology; Bacteremia; Streptococcus pneumoniae; Internal medicine; Prospective cohort study; Sputum; Pneumococcal pneumonia; Sepsis; Pediatrics; Tuberculosis; Antibiotics; Pathology","score_opus":0.01779719899648061,"score_gpt":0.3558421927318755,"score_spread":0.33804499373539487,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2065437582","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99650294,0.00036946355,0.00014346786,0.0018040721,0.000314004,0.00029283387,0.000010109333,0.0000062518525,0.0005568637],"genre_scores_gemma":[0.9969528,0.00028796977,0.00041185634,0.0005145213,0.000704143,0.0000062259905,0.0000058312544,0.000016689315,0.0010999992],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99851525,0.000040209376,0.0008499633,0.0001258064,0.00033838634,0.00013039188],"domain_scores_gemma":[0.9979503,0.00019262148,0.00040728768,0.00009936415,0.001141863,0.00020856776],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017250609,0.00013680659,0.0006405479,0.0001443457,0.000046573972,0.000006267112,0.00008290473,0.000066058914,0.00009036409],"category_scores_gemma":[0.00036442062,0.00007313948,0.00010765351,0.000110542685,0.00021884506,0.0001091211,0.000009836723,0.00021319914,8.136114e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010608627,0.00028405216,0.9805506,0.00028994368,0.00028025985,0.000019172241,0.00043130104,0.000009304687,0.003294698,0.0000066384655,0.0003481275,0.013425043],"study_design_scores_gemma":[0.00609837,0.0111772865,0.9683976,0.0006381641,0.00039833065,0.00018991569,0.0001717156,0.00001486073,0.00031906532,0.000030819585,0.012489804,0.0000740634],"about_ca_topic_score_codex":0.000021365657,"about_ca_topic_score_gemma":0.000017998002,"teacher_disagreement_score":0.013350979,"about_ca_system_score_codex":0.000025058973,"about_ca_system_score_gemma":0.00013300696,"threshold_uncertainty_score":0.29825416},"labels":[],"label_agreement":null},{"id":"W2065857582","doi":"10.1046/j.1532-5415.2003.51165.x","title":"Community‐Acquired Pneumonia in Older People: The Need for a Broader Perspective","year":2003,"lang":"en","type":"review","venue":"Journal of the American Geriatrics Society","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Socioeconomic status; Environmental health; Gerontology; Pneumonia; Public health; Perspective (graphical); Health care; Population; Pathology; Economic growth","score_opus":0.038108869316620816,"score_gpt":0.36289839155954035,"score_spread":0.3247895222429195,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2065857582","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.003514309,0.98560506,0.00021997224,0.006839998,0.0012680836,0.002213374,0.00004806105,0.000020962667,0.00027016737],"genre_scores_gemma":[0.00089806475,0.99526983,0.00022781575,0.0024243013,0.0006217486,0.00007379111,0.00000251505,0.00008636196,0.00039556075],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9967158,0.0011767253,0.0010658682,0.00018479348,0.00044947513,0.0004073678],"domain_scores_gemma":[0.9947981,0.0009895497,0.0027786505,0.00073381286,0.00055771385,0.00014215744],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016149541,0.00042353806,0.0023130928,0.00018846556,0.00057032786,0.00006022851,0.00070671394,0.00022284326,0.000013432448],"category_scores_gemma":[0.0005565368,0.0002099987,0.0037999186,0.0025220523,0.00042095062,0.00006833839,0.00013045488,0.0021205742,0.0000027279468],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052059966,0.010230366,0.009777996,0.03643481,0.022191182,0.000105610816,0.10121147,0.00024953778,0.0010264148,0.00086074666,0.26456344,0.55282784],"study_design_scores_gemma":[0.001154198,0.0005086827,0.0032487111,0.0014511736,0.0038591465,0.0016570576,0.012294895,0.0000100116295,5.662893e-7,0.00010447826,0.9754039,0.00030717437],"about_ca_topic_score_codex":0.00014585513,"about_ca_topic_score_gemma":0.000023943436,"teacher_disagreement_score":0.71084046,"about_ca_system_score_codex":0.0011941486,"about_ca_system_score_gemma":0.0017158381,"threshold_uncertainty_score":0.92129576},"labels":[],"label_agreement":null},{"id":"W2066338045","doi":"10.1016/s2213-2600(15)00044-2","title":"Antibiotic trials for community-acquired pneumonia","year":2015,"lang":"en","type":"letter","venue":"The Lancet Respiratory Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; SickKids Foundation; University of Toronto","funders":"","keywords":"Medicine; Pneumonia; Antibiotics; Community-acquired pneumonia; Intensive care medicine; Internal medicine; Microbiology","score_opus":0.3588052556305804,"score_gpt":0.4205162127452899,"score_spread":0.061710957114709475,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066338045","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0044687917,0.003208652,0.00009893985,0.97277063,0.00331911,0.0037168667,0.0003009826,0.00047974556,0.011636275],"genre_scores_gemma":[0.0044766823,0.00015970055,0.00003098306,0.9218269,0.06834805,0.0002694276,0.0005293979,0.0002122862,0.004146592],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99204737,0.0036100873,0.001665468,0.0005560593,0.0010647541,0.0010562505],"domain_scores_gemma":[0.9913402,0.0035893957,0.0010618025,0.0029163223,0.0007815496,0.00031070304],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.013066251,0.0008311845,0.004269358,0.0004670771,0.0007990941,0.000049295424,0.00096953445,0.0013016915,0.00016960735],"category_scores_gemma":[0.0077558765,0.00045096487,0.00059795467,0.0005469228,0.001208085,0.00007922005,0.00015340705,0.004238405,0.00015827022],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025854795,0.00007710072,0.00027840814,0.0011382512,0.0005697209,0.00020614045,0.00039333655,0.0000017387454,0.01846044,0.000042077918,0.977164,0.0014102557],"study_design_scores_gemma":[0.0065443707,0.002623331,0.0012971801,0.0013250536,0.0020409476,0.00024018204,0.00018956413,0.0000101673995,0.00024333673,0.00046890677,0.9845659,0.00045104776],"about_ca_topic_score_codex":0.000076325996,"about_ca_topic_score_gemma":0.000024885438,"teacher_disagreement_score":0.065028936,"about_ca_system_score_codex":0.00031634283,"about_ca_system_score_gemma":0.00083651464,"threshold_uncertainty_score":0.9999948},"labels":[],"label_agreement":null},{"id":"W2067153891","doi":"10.1186/1471-2334-8-129","title":"Empyema associated with community-acquired pneumonia: A Pediatric Investigator's Collaborative Network on Infections in Canada (PICNIC) study","year":2008,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"SickKids Foundation; University of Ottawa; University of British Columbia; Izaak Walton Killam Health Centre; Stollery Children's Hospital; Alberta Children's Hospital; Hospital for Sick Children; University of Saskatchewan; University of Alberta; Children's Hospital of Eastern Ontario; University of Calgary; University of Toronto; Montreal Children's Hospital; Dalhousie University","funders":"Infectious Diseases Society of America","keywords":"Medicine; Empyema; Thoracentesis; Pneumonia; Lobar pneumonia; Epidemiology; Pediatric intensive care unit; Pediatrics; Incidence (geometry); Chest radiograph; Surgery; Intensive care medicine; Pleural effusion; Internal medicine; Lung","score_opus":0.02240870899067755,"score_gpt":0.24529318167598815,"score_spread":0.22288447268531061,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2067153891","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958217,0.000101520745,0.000006452557,0.000095624775,0.00039536538,0.001612704,0.000094443996,0.0003150587,0.0015571257],"genre_scores_gemma":[0.99773073,0.000047075435,0.000002025232,0.001193389,0.00027605696,0.0005430317,0.00006643572,0.00006103684,0.000080229336],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9968398,0.0011800309,0.0005069693,0.00038284686,0.00051356014,0.00057679694],"domain_scores_gemma":[0.99724317,0.00091049663,0.00025400752,0.0005804672,0.00037123694,0.0006406114],"candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.00019864377,0.00042469858,0.00068941683,0.0003795899,0.0013741051,0.000032753473,0.00011895412,0.000115112,0.000035302175],"category_scores_gemma":[0.0010880518,0.000364228,0.00010796422,0.0029919278,0.00018409503,0.00015062587,0.000062858024,0.0006334192,0.00001875093],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009262608,0.004335281,0.9869608,0.000046639172,0.00020867652,0.00035328115,0.0005749901,0.0058863205,0.000017007495,0.000012251765,0.0015012955,0.000010812715],"study_design_scores_gemma":[0.0046204044,0.0033233727,0.9898275,0.00012341689,0.0004317548,0.00011515861,0.0008809138,0.000048667844,0.0000059751114,0.000030036861,0.0002111398,0.0003816394],"about_ca_topic_score_codex":0.19529012,"about_ca_topic_score_gemma":0.92588013,"teacher_disagreement_score":0.73059,"about_ca_system_score_codex":0.0015907038,"about_ca_system_score_gemma":0.009862481,"threshold_uncertainty_score":0.999926},"labels":[],"label_agreement":null},{"id":"W2067198983","doi":"10.1186/1471-2431-12-133","title":"Community-acquired lobar pneumonia in children in the era of universal 7-valent pneumococcal vaccination: a review of clinical presentations and antimicrobial treatment from a Canadian pediatric hospital","year":2012,"lang":"en","type":"review","venue":"BMC Pediatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Children's Hospital of Eastern Ontario","funders":"","keywords":"Medicine; Streptococcus pneumoniae; Pneumonia; Pleural effusion; Community-acquired pneumonia; Pediatrics; Antimicrobial stewardship; Antimicrobial; Lobar pneumonia; Empyema; Internal medicine; Intensive care medicine; Antibiotics; Surgery; Antibiotic resistance","score_opus":0.060243135200466376,"score_gpt":0.36512214160153106,"score_spread":0.3048790064010647,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2067198983","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.15363291,0.8421339,0.0000018204324,0.00025266988,0.00026192298,0.002864338,0.00072152546,0.0000115205185,0.000119438984],"genre_scores_gemma":[0.023573807,0.9748251,0.000051981235,0.000092201895,0.00068696635,0.00009126439,0.0006338539,0.000033527613,0.000011285237],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99558973,0.0017150667,0.0017402223,0.00031601364,0.0002839322,0.0003550236],"domain_scores_gemma":[0.9971868,0.00092210324,0.0008321783,0.0006570302,0.00013297959,0.00026890275],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010376063,0.00040357246,0.0020657682,0.0006432872,0.00011365194,0.0000133319745,0.00032611346,0.00044088322,0.000029881972],"category_scores_gemma":[0.00038316133,0.00029144462,0.0005855533,0.0013935502,0.00009069338,0.00010437978,0.00008910504,0.0009132655,0.000008619583],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009064103,0.0016720826,0.94334257,0.020195477,0.00010849671,0.00001924703,0.00041290937,9.747646e-7,3.1813792e-7,0.000012979739,0.00026196364,0.033963896],"study_design_scores_gemma":[0.0016790753,0.0004880618,0.94590217,0.0037278717,0.0062948884,0.00008161973,0.00008210282,0.000002093497,1.2250234e-7,0.0000031397599,0.04142705,0.00031179516],"about_ca_topic_score_codex":0.022994524,"about_ca_topic_score_gemma":0.017388932,"teacher_disagreement_score":0.13269126,"about_ca_system_score_codex":0.00028132787,"about_ca_system_score_gemma":0.0027534268,"threshold_uncertainty_score":0.99995375},"labels":[],"label_agreement":null},{"id":"W2067770912","doi":"10.1056/nejmoa012122","title":"Resistance to Levofloxacin and Failure of Treatment of Pneumococcal Pneumonia","year":2002,"lang":"en","type":"article","venue":"New England Journal of Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":537,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Medical Association; Mount Sinai Hospital; University Health Network; University of Toronto; Queen Elizabeth II Health Sciences Centre","funders":"","keywords":"Levofloxacin; Medicine; Streptococcus pneumoniae; Pneumococcal pneumonia; Pneumonia; Pneumococcal infections; Empirical treatment; Streptococcaceae; Intensive care medicine; Internal medicine; Microbiology; Antibiotics","score_opus":0.026381493696533476,"score_gpt":0.27585851531307937,"score_spread":0.2494770216165459,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2067770912","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97536635,0.0020031724,0.0001022096,0.020684142,0.00020781133,0.00016766654,0.0000043766404,0.0000063654497,0.0014579068],"genre_scores_gemma":[0.99632037,0.0008674056,0.00025149272,0.00018482462,0.0010421368,0.0000012667745,5.9416004e-7,0.0000117378995,0.0013201932],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987801,0.00005482664,0.00062275206,0.00011040763,0.00028763295,0.00014428863],"domain_scores_gemma":[0.99878365,0.00014336451,0.0003021206,0.0001726135,0.0002105738,0.00038765627],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021355409,0.00014257124,0.000687302,0.00030232687,0.000032452226,0.00000226441,0.00005555373,0.000064599284,0.00016628501],"category_scores_gemma":[0.00020403371,0.00008529446,0.00008715148,0.00024376741,0.00012583444,0.000044737088,0.000008360586,0.00013991154,0.0000022808965],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039875114,0.00025844842,0.035158116,0.00011528787,0.00018725813,0.0001771597,0.002904762,0.00001964908,0.92376226,0.000093802955,0.002194465,0.034730032],"study_design_scores_gemma":[0.067089535,0.028249513,0.22293505,0.002136963,0.0010048549,0.0034259562,0.00063858455,0.000035613615,0.021035193,0.000253497,0.65296316,0.0002320935],"about_ca_topic_score_codex":0.000023939307,"about_ca_topic_score_gemma":0.00007655791,"teacher_disagreement_score":0.90272707,"about_ca_system_score_codex":0.00005997003,"about_ca_system_score_gemma":0.000076026445,"threshold_uncertainty_score":0.3478207},"labels":[],"label_agreement":null},{"id":"W2068003770","doi":"10.1016/j.vaccine.2010.05.058","title":"Pharmacoeconomic evaluation of 10- and 13-valent pneumococcal conjugate vaccines","year":2010,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Children's Hospital; University of Calgary; University of Alberta; Institute of Health Economics","funders":"","keywords":"Pneumococcal conjugate vaccine; Conjugate; Medicine; Virology; Pneumococcal infections; Pneumococcal disease; Streptococcus pneumoniae; Microbiology; Biology; Antibiotics; Mathematics","score_opus":0.02277982178392177,"score_gpt":0.3242660223496174,"score_spread":0.3014862005656956,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2068003770","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951539,0.00013795524,0.0000034626985,0.0017009852,0.0004432352,0.00041853607,0.000008073302,0.00004121763,0.002092629],"genre_scores_gemma":[0.9990111,0.000069729715,0.000018157481,0.00020671081,0.00028079332,0.000032501695,0.000009845757,0.000015026912,0.00035615475],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99921083,0.0000386539,0.00028704284,0.00019117897,0.00013579927,0.00013651776],"domain_scores_gemma":[0.99927723,0.00004319581,0.000102776154,0.00021240966,0.00023626778,0.00012809414],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004631429,0.00011851571,0.0002463418,0.00013957353,0.00005862434,0.000007830383,0.000041976426,0.000075006305,0.0018935081],"category_scores_gemma":[0.00010415425,0.00009488797,0.000060494072,0.00009061545,0.0000130756,0.00007718201,0.00002813343,0.00017889698,0.00006933446],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006243805,0.0001119349,0.10189352,0.000046994835,0.000060648596,0.000001950437,0.000039156228,0.000016566697,0.889795,0.000040052164,0.0007511002,0.0071806563],"study_design_scores_gemma":[0.006423184,0.00032107497,0.8632416,0.000031865835,0.0005974618,0.00018416304,0.00002440459,0.0038733243,0.09956057,0.00012782754,0.025464008,0.00015047647],"about_ca_topic_score_codex":0.00001675222,"about_ca_topic_score_gemma":0.000057061945,"teacher_disagreement_score":0.7902344,"about_ca_system_score_codex":0.000019727217,"about_ca_system_score_gemma":0.000100240504,"threshold_uncertainty_score":0.9990189},"labels":[],"label_agreement":null},{"id":"W206879411","doi":"10.1155/2014/196748","title":"Clinical Features and Outcomes of Serotype 19A Invasive Pneumococcal Disease in Calgary, Alberta","year":2014,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Children's Hospital; Calgary Laboratory Services; University of Calgary; Alberta Health Services","funders":"Alberta Children's Hospital Foundation","keywords":"Pneumococcal disease; Serotype; Medicine; Disease; Streptococcus pneumoniae; Virology; Internal medicine; Biology; Microbiology; Antibiotics","score_opus":0.006857876559316836,"score_gpt":0.2678343496699856,"score_spread":0.26097647311066874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W206879411","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945236,0.0012747092,0.0000124795715,0.003345427,0.00048348503,0.00014281258,0.000022441325,0.000003898183,0.00019116089],"genre_scores_gemma":[0.9960337,0.00045943639,0.0000048082593,0.003266492,0.00016500415,0.0000030903097,0.000008309171,0.000010433713,0.000048698672],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987403,0.00021169103,0.0005536195,0.00017262362,0.00006404916,0.00025771535],"domain_scores_gemma":[0.9968604,0.0006044013,0.00017272364,0.000118754026,0.00011902001,0.002124718],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002739922,0.00014403806,0.0006168757,0.00029867006,0.000069372836,0.000008981058,0.000071616654,0.00021958168,0.00010773792],"category_scores_gemma":[0.0038277474,0.00010176498,0.00016278875,0.00010332956,0.0007063981,0.000038707178,0.000024416382,0.00042624437,0.000002100111],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000056928482,0.00012320849,0.9940042,0.000080438156,0.000110603374,0.00022650616,0.000048260456,0.0000011740907,0.0007088807,0.00023945412,0.00041107959,0.0039892974],"study_design_scores_gemma":[0.0019951037,0.0007761627,0.9860376,0.00021589037,0.00018771182,0.0012870507,0.000019950385,0.000006345029,0.000008789608,0.00021480588,0.009153852,0.00009672824],"about_ca_topic_score_codex":0.004575802,"about_ca_topic_score_gemma":0.048804242,"teacher_disagreement_score":0.044228442,"about_ca_system_score_codex":0.00004538053,"about_ca_system_score_gemma":0.0017206117,"threshold_uncertainty_score":0.9685526},"labels":[],"label_agreement":null},{"id":"W2068816753","doi":"10.1197/j.aem.2003.12.019","title":"Does the Lateral Chest Radiograph Help Pediatric Emergency Physicians Diagnose Pneumonia? A Randomized Clinical Trial","year":2004,"lang":"en","type":"article","venue":"Academic Emergency Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Université de Montréal; Montreal Children's Hospital; Children's Hospital of Western Ontario","funders":"","keywords":"Medicine; Chest radiograph; Pneumonia; Randomized controlled trial; Emergency department; Radiography; Emergency physician; Pediatrics; Emergency medicine; Physical therapy; Radiology; Surgery; Internal medicine; Psychiatry","score_opus":0.04424062382563105,"score_gpt":0.3794852318596822,"score_spread":0.33524460803405115,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2068816753","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92968225,0.0043673604,0.00019669333,0.0381754,0.022968989,0.0030792875,0.000012734307,0.0002949391,0.0012223395],"genre_scores_gemma":[0.84200174,0.1330294,0.000013777881,0.0016604209,0.020380542,0.0006071005,0.000036155387,0.000081105354,0.0021897864],"study_design_codex":"observational","study_design_gemma":"randomized_trial","domain_scores_codex":[0.99324894,0.0007838556,0.0034095868,0.00081028434,0.0009050938,0.0008422339],"domain_scores_gemma":[0.99691135,0.0005944157,0.0009160519,0.00085058436,0.00024022815,0.0004873535],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0037864791,0.0005980741,0.0017481984,0.0004263146,0.000473401,0.0000019573022,0.0005303274,0.0006133998,0.0012228701],"category_scores_gemma":[0.003710439,0.0002735345,0.0012857484,0.0017145696,0.00075802376,0.00018943366,0.000097164244,0.0023711426,0.00015813137],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.08843592,0.0021981262,0.8438956,0.00044681886,0.0018477017,0.00016127121,0.0052069803,0.0000399734,0.011884821,0.0015031588,0.040342327,0.0040372703],"study_design_scores_gemma":[0.67475486,0.0025502038,0.26176292,0.0002892854,0.005316392,0.00009109792,0.0005224719,0.000053464137,0.00010913477,0.005789867,0.047876406,0.00088391366],"about_ca_topic_score_codex":0.00020486121,"about_ca_topic_score_gemma":0.0000339378,"teacher_disagreement_score":0.5863189,"about_ca_system_score_codex":0.000076241035,"about_ca_system_score_gemma":0.00019241906,"threshold_uncertainty_score":0.9999717},"labels":[],"label_agreement":null},{"id":"W2069057424","doi":"10.7326/0003-4819-135-4-200108210-00020","title":"Update in Pulmonary Disease","year":2001,"lang":"en","type":"letter","venue":"Annals of Internal Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Chronic bronchitis; Veterans Affairs; Bronchitis; Azithromycin; Internal medicine; Antibiotics; Microbiology","score_opus":0.050121855825100425,"score_gpt":0.3500426251422143,"score_spread":0.29992076931711387,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2069057424","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.012598314,0.0020598616,0.000021072809,0.96442616,0.00085255253,0.00029701827,0.00003771099,0.00004044434,0.019666862],"genre_scores_gemma":[0.06639558,0.0017342053,0.0000036111212,0.91751635,0.0066086533,0.000028691964,0.00015963915,0.000054307282,0.0074989693],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977793,0.000084908716,0.00078815833,0.0003742275,0.0005656606,0.0004077215],"domain_scores_gemma":[0.9985794,0.00011297087,0.00029410582,0.0005180463,0.00024291605,0.00025257224],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00024238585,0.0003363403,0.00087404065,0.0008220383,0.0000224953,0.0000040611194,0.00022814645,0.0003665052,0.0012170973],"category_scores_gemma":[0.00035802723,0.00024047255,0.00024977323,0.00031805705,0.0003122059,0.000059933172,0.000058546684,0.0017991719,0.0000998572],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021225214,0.00015449795,0.029657265,0.00059210736,0.0001253496,0.022658525,0.000034012854,0.0000013503967,0.0008269216,0.0000125049955,0.9430799,0.0026453265],"study_design_scores_gemma":[0.0005955932,0.0004189699,0.03295281,0.004220856,0.00014662351,0.00052781496,0.000014487952,0.000025756017,0.00009345506,0.00039068115,0.96042943,0.00018352733],"about_ca_topic_score_codex":0.00026908232,"about_ca_topic_score_gemma":0.000007881705,"teacher_disagreement_score":0.053797264,"about_ca_system_score_codex":0.00003529275,"about_ca_system_score_gemma":0.00013442275,"threshold_uncertainty_score":0.9996959},"labels":[],"label_agreement":null},{"id":"W2069316653","doi":"10.1016/j.jval.2011.08.200","title":"PIN12 Epidemiology, Outcomes, and Costs of Hospitalization Due to Pneumonia, Meningitis, and Septicemia in Canada from 2004 to 2010","year":2011,"lang":"en","type":"article","venue":"Value in Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Pfizer (Canada); Dalhousie University","funders":"","keywords":"Medicine; Incidence (geometry); Case fatality rate; Meningitis; Pneumonia; Epidemiology; Pediatrics; Population; Diagnosis code; Internal medicine; Environmental health","score_opus":0.04894306927741858,"score_gpt":0.3030747949701776,"score_spread":0.254131725692759,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2069316653","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99309254,0.00053957035,0.00012453871,0.0052707205,0.0002694541,0.0005462629,0.000047743026,0.000009648311,0.00009953157],"genre_scores_gemma":[0.9950957,0.000118079035,0.0007181095,0.00398354,0.0000197952,0.000024058758,0.000008380771,0.00001186675,0.000020487774],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987102,0.00018526241,0.0005133168,0.00023897494,0.00008459433,0.00026765355],"domain_scores_gemma":[0.99910253,0.00025124947,0.00010475631,0.00016954323,0.000032640353,0.00033927985],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047327977,0.000108532746,0.0004753859,0.00018523066,0.000034732257,0.0000017329539,0.00003846322,0.00007171379,0.000014598353],"category_scores_gemma":[0.00049753825,0.000098697165,0.000014016279,0.0002258741,0.000029149978,0.00003542904,0.000032565396,0.00015233194,0.0000024344615],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016949192,0.000036040343,0.9963167,0.00005444017,0.000009429017,0.000023635672,0.000886507,0.00021421422,0.00038668563,0.00017680887,0.00032572765,0.0015528653],"study_design_scores_gemma":[0.00051687454,0.00030745447,0.9976305,0.00033297765,0.0000076156666,0.000018586612,0.0001678793,0.00029245045,0.000050404204,0.00013215035,0.00046015176,0.00008295912],"about_ca_topic_score_codex":0.9721641,"about_ca_topic_score_gemma":0.801839,"teacher_disagreement_score":0.17032506,"about_ca_system_score_codex":0.00056895724,"about_ca_system_score_gemma":0.00076635735,"threshold_uncertainty_score":0.40247536},"labels":[],"label_agreement":null},{"id":"W2069483193","doi":"10.1055/s-2005-925524","title":"Escalation of Antimicrobial Resistance among<i>Streptococcus pneumoniae</i>: Implications for Therapy","year":2005,"lang":"en","type":"review","venue":"Seminars in Respiratory and Critical Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Medicine; Streptococcus pneumoniae; Antibiotic resistance; Penicillin; Antimicrobial; Antibiotics; Pneumonia; Intensive care medicine; Drug resistance; Microbiology; Internal medicine; Biology","score_opus":0.056856707352588694,"score_gpt":0.40023072903301143,"score_spread":0.34337402168042275,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2069483193","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0013939603,0.9933593,0.00005522539,0.0009813008,0.00024737848,0.002376754,0.00022198174,0.000052326144,0.0013117545],"genre_scores_gemma":[0.008354071,0.9890628,0.00006410533,0.0006972403,0.0007540459,0.00075068284,0.00012970547,0.00007777551,0.0001095689],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99718446,0.00020021101,0.0012877528,0.00068069174,0.00022799706,0.00041889705],"domain_scores_gemma":[0.9974683,0.00097452174,0.0002709889,0.00060024875,0.00041429856,0.00027162497],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00045700674,0.00049674796,0.002014787,0.0005226254,0.0001720984,0.000012582393,0.00016648548,0.00064409536,0.000026958212],"category_scores_gemma":[0.0008399602,0.00038134502,0.00036735865,0.0005864523,0.0011748641,0.00008865601,0.000041909236,0.000633236,0.0000019542917],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054030203,0.00023486858,0.006224577,0.02893795,0.00007259377,0.00002275194,0.00032179186,3.5349356e-7,0.0009269271,0.0012368277,0.0012952301,0.9606721],"study_design_scores_gemma":[0.0012488563,0.00081226754,0.003463851,0.029153422,0.0007824788,0.000027629048,0.0001718263,4.853286e-7,0.000038173137,0.00007196309,0.9638967,0.0003323313],"about_ca_topic_score_codex":0.000002878485,"about_ca_topic_score_gemma":0.00003699571,"teacher_disagreement_score":0.9626015,"about_ca_system_score_codex":0.00016067302,"about_ca_system_score_gemma":0.0003879464,"threshold_uncertainty_score":0.99986386},"labels":[],"label_agreement":null},{"id":"W2069671676","doi":"10.1016/j.clinbiochem.2012.07.048","title":"Development of a time-resolved fluoroimmunoassay of CFP-10 for rapid diagnosis of tuberculous pleural effusion","year":2012,"lang":"en","type":"article","venue":"Clinical Biochemistry","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Immunogenicity; Reactogenicity; Medicine; Vaccination; Adverse effect; Immunology; Neisseria meningitidis; Regimen; Virology; Antibody; Biology; Internal medicine","score_opus":0.049425124415407876,"score_gpt":0.3602281943291246,"score_spread":0.31080306991371676,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2069671676","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982411,0.00052717194,0.000048238544,0.000114003604,0.00015586852,0.0002646972,0.000037741833,0.000018885048,0.000592248],"genre_scores_gemma":[0.99755216,0.00006942894,0.0016314444,0.00006829468,0.0001661589,0.000055517827,0.00006253,0.000015522499,0.00037894305],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99834406,0.000032913893,0.0010555607,0.00017767468,0.00017867878,0.00021112275],"domain_scores_gemma":[0.99836916,0.00056640734,0.00033059064,0.00035175186,0.00021711791,0.0001649592],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00067559304,0.00013326287,0.00054822245,0.000036761252,0.000041485313,0.0000013590362,0.00010395209,0.0002748662,0.0003607185],"category_scores_gemma":[0.0011712082,0.00010695898,0.00035669576,0.00011531618,0.0002300519,0.000021844291,0.000057612935,0.00014479118,0.000014833299],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019043004,0.0016627354,0.058062036,0.0005165118,0.00017053676,4.7058984e-7,0.00008774963,2.186793e-7,0.924069,0.0000013538541,0.001402405,0.013836575],"study_design_scores_gemma":[0.0015439619,0.0003002671,0.029521193,0.00026400544,0.00016979697,0.0000063693396,0.000049941726,0.0000138254945,0.95542943,0.0000023047726,0.012593568,0.00010535645],"about_ca_topic_score_codex":0.00000198954,"about_ca_topic_score_gemma":2.0541806e-7,"teacher_disagreement_score":0.03136043,"about_ca_system_score_codex":0.000028133056,"about_ca_system_score_gemma":0.0002116722,"threshold_uncertainty_score":0.43616605},"labels":[],"label_agreement":null},{"id":"W2069718099","doi":"10.1016/s0149-2918(00)88483-0","title":"Economic assessment of the community-acquired pneumonia intervention trial employing levofloxacin","year":2000,"lang":"en","type":"article","venue":"Clinical Therapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":49,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; Ontario Institute for Cancer Research; Robarts Clinical Trials","funders":"","keywords":"Medicine; Levofloxacin; Community-acquired pneumonia; Pneumonia; Intensive care medicine; Intervention (counseling); Internal medicine; Nursing; Antibiotics; Microbiology","score_opus":0.15080335980512372,"score_gpt":0.46795402641240175,"score_spread":0.31715066660727803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2069718099","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936397,0.000032834145,0.000070449234,0.001221471,0.0010319352,0.0004865468,0.0000091561915,0.00004503689,0.0034628557],"genre_scores_gemma":[0.997126,0.0001544804,0.000058066722,0.0016069979,0.00027702592,0.000017443057,0.0000050064937,0.000019942909,0.0007350509],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978216,0.00086720637,0.0008925329,0.00013696082,0.00012803254,0.00015362463],"domain_scores_gemma":[0.998608,0.00041681217,0.00020872016,0.0006553469,0.00004023641,0.00007087522],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011090471,0.00012168795,0.00038702117,0.00003539786,0.00022139998,0.00001627707,0.00020490486,0.00016685607,0.00040288025],"category_scores_gemma":[0.000040467752,0.00008210879,0.0005649227,0.000097612814,0.00028398627,0.00004455043,0.000051181236,0.0005519845,0.00003259884],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0066792546,0.00850141,0.5574337,0.00017660132,0.0017876069,0.0000065338286,0.00062485016,0.00035128568,0.028670168,0.0008643924,0.00024726245,0.39465693],"study_design_scores_gemma":[0.041687172,0.0044671916,0.86278844,0.00027689565,0.00070365344,0.000025423431,0.00020847737,0.001956733,0.00075313053,0.0007653448,0.08612178,0.00024573697],"about_ca_topic_score_codex":0.000022369217,"about_ca_topic_score_gemma":0.000026876418,"teacher_disagreement_score":0.3944112,"about_ca_system_score_codex":0.000076662596,"about_ca_system_score_gemma":0.00013985904,"threshold_uncertainty_score":0.4411256},"labels":[],"label_agreement":null},{"id":"W2070074427","doi":"10.2165/00003495-200262120-00006","title":"The Ketolides","year":2002,"lang":"en","type":"review","venue":"Drugs","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":181,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Manitoba","funders":"","keywords":"Telithromycin; Ketolide; Microbiology; Streptococcus pneumoniae; Erythromycin; Chemistry; Biochemistry; Antibiotics; Biology","score_opus":0.05765043488422787,"score_gpt":0.360429234636641,"score_spread":0.3027787997524131,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2070074427","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[9.344327e-7,0.95088565,6.1320986e-7,0.00025907913,0.00039849945,0.00031977374,0.0000052618116,0.00006170544,0.048068505],"genre_scores_gemma":[0.0000019595943,0.9782858,0.0000017238539,0.0001930025,0.00045396353,0.00007955564,0.000007402974,0.000027354141,0.020949276],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99926406,0.000055530996,0.00024136402,0.00014076178,0.0001249413,0.00017333202],"domain_scores_gemma":[0.9992475,0.0001794309,0.00009094525,0.00037495428,0.000026881458,0.000080295424],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009663529,0.00016593744,0.0005925417,0.000066911445,0.00021330366,0.000026557831,0.00009555412,0.0001509839,0.000099174445],"category_scores_gemma":[0.000056005003,0.00007886389,0.00043477683,0.00019334267,0.000071848895,0.000012456386,0.000024519335,0.00035568263,0.0014623397],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[1.8430701e-7,0.000016203468,0.000001671911,0.0017750518,0.000079320336,0.00001342483,0.000020224217,6.0151404e-9,1.1229454e-7,0.00014111045,0.008465452,0.98948723],"study_design_scores_gemma":[0.000053476542,0.000020644311,0.0000026829073,0.0028929075,0.00057222904,0.00018849366,0.000009582146,5.1044367e-7,1.4158407e-7,0.000009165961,0.9961662,0.00008390822],"about_ca_topic_score_codex":0.0000019179492,"about_ca_topic_score_gemma":8.488492e-7,"teacher_disagreement_score":0.9894033,"about_ca_system_score_codex":0.000055266646,"about_ca_system_score_gemma":0.00011174334,"threshold_uncertainty_score":0.99931514},"labels":[],"label_agreement":null},{"id":"W2070185949","doi":"10.1097/00001432-200404000-00010","title":"Pneumonia in the elderly","year":2004,"lang":"en","type":"review","venue":"Current Opinion in Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Juravinski Hospital; McMaster University","funders":"","keywords":"Medicine; Pneumonia; Intensive care medicine; Internal medicine","score_opus":0.07539748643285099,"score_gpt":0.4082480723175215,"score_spread":0.33285058588467054,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2070185949","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00011243772,0.99151593,0.000007215532,0.000097379976,0.0055493577,0.0018976829,0.00008578544,0.00013218679,0.0006020405],"genre_scores_gemma":[0.001061027,0.99652404,3.6522889e-7,0.000041145082,0.00088460644,0.0011548758,0.0002683298,0.000052924894,0.000012663594],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9974548,0.00037056033,0.00084455987,0.00053075235,0.00035685438,0.00044244074],"domain_scores_gemma":[0.9986375,0.00027394813,0.00025743523,0.0006067736,0.000051226983,0.00017312872],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00018851826,0.0005250608,0.0012989554,0.00089867006,0.00013237313,0.00007183403,0.00023879188,0.00026863025,0.00006936462],"category_scores_gemma":[0.00022257231,0.00034150074,0.00073360646,0.0013683528,0.0001310396,0.00009650214,0.000055894725,0.0011629957,0.00026046118],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000042072597,0.002218215,0.011304232,0.054223005,0.00006811817,0.00003443264,0.0001016656,0.0000132109135,1.3750827e-7,0.00065157074,0.00092868385,0.9304525],"study_design_scores_gemma":[0.0008063301,0.00033100627,0.0058201253,0.049204584,0.0003699977,0.000256712,0.000018387342,8.7616337e-7,1.07226885e-8,0.0002897064,0.9425741,0.00032820654],"about_ca_topic_score_codex":0.000029674564,"about_ca_topic_score_gemma":0.00001572463,"teacher_disagreement_score":0.9416454,"about_ca_system_score_codex":0.00057647843,"about_ca_system_score_gemma":0.0012258084,"threshold_uncertainty_score":0.9999037},"labels":[],"label_agreement":null},{"id":"W2070186759","doi":"10.1128/iai.06348-11","title":"Neutralizing Antibodies Elicited by a Novel Detoxified Pneumolysin Derivative, PlyD1, Provide Protection against Both Pneumococcal Infection and Lung Injury","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"","keywords":"Pneumolysin; Immunogenicity; Immunology; Antibody; Biology; Streptococcus pneumoniae; Neutralizing antibody; Pneumonia; Virology; Microbiology; Medicine; Antibiotics; Internal medicine","score_opus":0.027048498603710197,"score_gpt":0.29559182765022557,"score_spread":0.26854332904651534,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2070186759","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99432504,0.0002042288,0.002447684,0.00030980766,0.0005185035,0.0010222399,0.000014821488,0.0003457092,0.0008119833],"genre_scores_gemma":[0.99821216,0.0007146159,0.000033533845,0.00049848034,0.00018885032,0.00014720435,0.00004099428,0.000039158822,0.00012499836],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984492,0.00022062783,0.00042752692,0.00029548325,0.00017248615,0.00043467258],"domain_scores_gemma":[0.9990689,0.000060485334,0.00021116112,0.00024632784,0.00014563015,0.00026745675],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00044321807,0.00033463168,0.00038451815,0.00040581133,0.0009416624,0.00010472957,0.000030502571,0.00028132572,0.000014992216],"category_scores_gemma":[0.0002370754,0.00030366474,0.00010571966,0.00055947003,0.00021740663,0.000844269,0.000079740734,0.00076534506,0.0000073219985],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006927881,0.00041155008,0.27684346,0.00015150224,0.00009762034,5.308963e-7,0.0003932141,0.0000038399958,0.71656036,0.000035422876,0.00009095782,0.005342267],"study_design_scores_gemma":[0.0012571559,0.00048287687,0.89036757,0.0001821081,0.00017078892,0.00025930133,0.000102345344,0.0006380899,0.088779345,0.000012366243,0.017381059,0.00036699092],"about_ca_topic_score_codex":0.0013979472,"about_ca_topic_score_gemma":0.00008926705,"teacher_disagreement_score":0.627781,"about_ca_system_score_codex":0.00016730426,"about_ca_system_score_gemma":0.000060435606,"threshold_uncertainty_score":0.9999415},"labels":[],"label_agreement":null},{"id":"W2070631416","doi":"10.1038/sj.bmt.1705964","title":"Invasive pneumococcal disease in adult hematopoietic stem cell transplant recipients: a decade of prospective population-based surveillance","year":2008,"lang":"en","type":"article","venue":"Bone Marrow Transplantation","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":99,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Queen's University; Mount Sinai Hospital; University of Alberta","funders":"","keywords":"Medicine; Stem cell; Pneumococcal disease; Hematopoietic stem cell transplantation; Immunology; Hematopoietic cell; Disease; Hematopoietic stem cell; Haematopoiesis; Population; Pneumococcal infections; Streptococcus pneumoniae; Internal medicine; Environmental health; Microbiology; Antibiotics","score_opus":0.01114394658831561,"score_gpt":0.2346981426220821,"score_spread":0.2235541960337665,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2070631416","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99763286,0.000073596595,0.0005448339,0.00027665315,0.00010349975,0.00087726896,0.0001875918,0.00006469177,0.000239019],"genre_scores_gemma":[0.9989746,0.00032020183,0.00004606062,0.000124165,0.000027089505,0.0001358201,0.00029644655,0.000026553025,0.000049015824],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99841017,0.000120195065,0.0005491534,0.00033685975,0.000344818,0.00023880013],"domain_scores_gemma":[0.99916214,0.00015493607,0.00015063657,0.00020332092,0.00014987765,0.0001790921],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010606062,0.00020553882,0.00037863242,0.00029193403,0.000099967976,0.0000052632217,0.000055507622,0.000109241395,0.000020508229],"category_scores_gemma":[0.000017520097,0.00019264121,0.00014262341,0.00042123182,0.00007383107,0.00011036235,0.0000023576317,0.00019124537,0.000010420808],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009896652,0.00048103515,0.9344354,0.0005825055,0.00001608909,0.0004308691,0.001846316,0.00093724154,0.06016997,0.00007274979,0.0000031603413,0.000034988647],"study_design_scores_gemma":[0.0035939096,0.00018917579,0.9768953,0.00051782536,0.00007862102,0.00011685996,0.00005254483,0.00027941662,0.018049048,0.000029553958,0.0000050717185,0.00019270582],"about_ca_topic_score_codex":0.00018843797,"about_ca_topic_score_gemma":0.00044441083,"teacher_disagreement_score":0.042459857,"about_ca_system_score_codex":0.00012160714,"about_ca_system_score_gemma":0.00026993285,"threshold_uncertainty_score":0.78556806},"labels":[],"label_agreement":null},{"id":"W2071037930","doi":"10.1016/j.trsl.2009.06.011","title":"Cerebrospinal fluid lactate dehydrogenase isoenzymes in children with bacterial and aseptic meningitis","year":2009,"lang":"en","type":"article","venue":"Translational research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Aseptic meningitis; Lactate dehydrogenase; Cerebrospinal fluid; Meningitis; Medicine; Microbiological culture; Aseptic processing; Isozyme; Internal medicine; Gastroenterology; Immunology; Pathology; Biology; Surgery; Bacteria; Enzyme; Biochemistry","score_opus":0.03780361395971413,"score_gpt":0.3530621289667955,"score_spread":0.31525851500708135,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2071037930","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9942511,0.0001263852,0.000033253848,0.0037762104,0.000010375291,0.0003814465,0.000018054858,0.000024799838,0.0013783881],"genre_scores_gemma":[0.99936146,0.000039080227,0.00015670378,0.00010807924,0.00011779021,0.000017409133,0.000046827696,0.000010852979,0.00014181863],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99875903,0.00008370879,0.0001580707,0.0002237055,0.0004711071,0.00030438876],"domain_scores_gemma":[0.99955136,0.0000667884,0.000013324694,0.00010632668,0.00009611373,0.00016611312],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030589482,0.000097235476,0.00014516177,0.00029211864,0.00015489403,0.000034529185,0.00004320742,0.00006203829,0.00023292503],"category_scores_gemma":[0.000030471978,0.00007713599,0.000030556363,0.00035135026,0.00014143404,0.00011529246,0.0000055261603,0.00030882878,0.000024567147],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012101941,0.00050945743,0.6002601,0.000035663503,0.00012311961,0.00012285454,0.00050928356,0.000092142,0.38375825,0.002022743,0.00025994433,0.01109625],"study_design_scores_gemma":[0.0024873195,0.00106326,0.99047226,0.000066836845,0.000018229679,0.00032534523,0.000012636298,0.00021435313,0.003733459,0.00040914802,0.001100114,0.00009701651],"about_ca_topic_score_codex":0.00003974561,"about_ca_topic_score_gemma":0.00005583753,"teacher_disagreement_score":0.39021218,"about_ca_system_score_codex":0.000032691652,"about_ca_system_score_gemma":0.0002272608,"threshold_uncertainty_score":0.31455144},"labels":[],"label_agreement":null},{"id":"W2071316949","doi":"10.1016/j.carres.2013.11.006","title":"Structure elucidation of capsular polysaccharides from Streptococcus pneumoniae serotype 33C, 33D, and revised structure of serotype 33B","year":2013,"lang":"en","type":"article","venue":"Carbohydrate Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Steacie Institute for Molecular Sciences; Institute for Biological Sciences","funders":"","keywords":"Serotype; Polysaccharide; Residue (chemistry); Chemistry; Streptococcus pneumoniae; Microbiology; Epitope; Virology; Antibody; Biochemistry; Medicine; Biology; Antibiotics; Immunology","score_opus":0.029463836736959164,"score_gpt":0.3224976245956319,"score_spread":0.29303378785867273,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2071316949","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968191,0.0006431672,0.000006328552,0.00058010593,0.000121959965,0.0013572781,0.00021124263,0.000036125795,0.00022468535],"genre_scores_gemma":[0.99924505,0.00019814857,0.00006152186,0.000055979755,0.00017745495,0.00003164609,0.00008555487,0.000035392957,0.0001092829],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99763215,0.00028426127,0.0005185497,0.0004484234,0.00068639923,0.00043021885],"domain_scores_gemma":[0.99754864,0.00016785378,0.00018537907,0.00069635815,0.0011174434,0.00028429777],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002305855,0.00023418623,0.000555819,0.0004657785,0.00015332903,0.000047214235,0.00018964233,0.00030935308,0.0006799168],"category_scores_gemma":[0.00033135712,0.00018500553,0.000093716015,0.00085822726,0.00037168455,0.00020288846,0.00012968306,0.00071322004,0.000017717653],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033132605,0.000042420168,0.08590583,0.00025144624,0.00013063473,0.000008825379,0.00029839392,0.000022644233,0.91141665,0.000094751944,0.00014699234,0.0016482562],"study_design_scores_gemma":[0.0009923714,0.00050582417,0.2001465,0.00034785876,0.00010776848,0.0000088256575,0.0003508462,0.00050627306,0.7946949,0.0017390744,0.00039614266,0.00020359395],"about_ca_topic_score_codex":0.0014394335,"about_ca_topic_score_gemma":0.00011054631,"teacher_disagreement_score":0.11672175,"about_ca_system_score_codex":0.00007787734,"about_ca_system_score_gemma":0.00031276236,"threshold_uncertainty_score":0.7544306},"labels":[],"label_agreement":null},{"id":"W2072065071","doi":"10.1179/joc.2006.18.6.634","title":"Short-Course Therapy of Gemifloxacin Effective Against Pneumococcal Pneumonia in Mice","year":2006,"lang":"en","type":"article","venue":"Journal of Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital","funders":"","keywords":"Gemifloxacin; Pneumonia; Pneumococcal pneumonia; Medicine; Short course; Streptococcus pneumoniae; Antibacterial agent; Pneumococcal infections; Intensive care medicine; Microbiology; Antibiotics; Internal medicine; Biology; Pediatrics","score_opus":0.00816311570671026,"score_gpt":0.2794562789509019,"score_spread":0.27129316324419167,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2072065071","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99475867,0.00086602726,0.00007946859,0.0020240166,0.00022875762,0.00039332247,0.0000030512274,0.000016128972,0.0016305844],"genre_scores_gemma":[0.9975534,0.0009257664,0.00009627217,0.0008163434,0.00047857652,0.00000867556,0.0000015405542,0.000037474903,0.000081947604],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983595,0.00009811834,0.00077876955,0.00015547422,0.0003536285,0.00025449783],"domain_scores_gemma":[0.9989541,0.00012767257,0.00035717685,0.00018488563,0.0002659171,0.000110251065],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004597923,0.00021448455,0.000662159,0.00034119154,0.000037454076,0.0000120203895,0.000130088,0.0001689321,0.000028842047],"category_scores_gemma":[0.000023939148,0.00015996251,0.0003525064,0.00039871273,0.00011704723,0.00012882649,0.000007504932,0.0004918872,0.0000037690777],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038357917,0.0010390696,0.13287666,0.00002433231,0.00012244844,0.000101051875,0.00016886457,0.00013391547,0.8336544,0.0000140235725,0.00017589875,0.031305734],"study_design_scores_gemma":[0.0041002063,0.00090683665,0.7642715,0.00021167059,0.000030426912,0.00029177647,0.000052612904,0.000041372772,0.22127359,0.00017948088,0.008500777,0.00013977231],"about_ca_topic_score_codex":0.0000130335775,"about_ca_topic_score_gemma":0.000013373453,"teacher_disagreement_score":0.6313948,"about_ca_system_score_codex":0.00012642868,"about_ca_system_score_gemma":0.00017368478,"threshold_uncertainty_score":0.6523082},"labels":[],"label_agreement":null},{"id":"W2072217233","doi":"10.1016/j.vaccine.2013.11.028","title":"Impact of 2+1 pneumococcal conjugate vaccine program in the province of Quebec, Canada","year":2014,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ministry of Health and Social Services; Université Laval; Institut National de Santé Publique du Québec; Centre hospitalier universitaire de Québec","funders":"","keywords":"Pneumococcal conjugate vaccine; Medicine; Serotype; Pneumococcal disease; Incidence (geometry); Pediatrics; Public health; Streptococcus pneumoniae; Virology; Biology; Antibiotics","score_opus":0.00780579926369528,"score_gpt":0.2759518143593138,"score_spread":0.26814601509561853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2072217233","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99642473,0.00005010742,0.000012332966,0.0019773114,0.00007086831,0.0007187013,0.000008836073,0.000022115397,0.0007149829],"genre_scores_gemma":[0.99943084,0.000010157947,0.000012536121,0.00020041625,0.000086147025,0.000034308578,0.000010503638,0.000012603518,0.00020248222],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989303,0.00009185413,0.00040849062,0.00015066362,0.00019524361,0.00022348533],"domain_scores_gemma":[0.9991418,0.000114525305,0.00015622363,0.00038613798,0.00011790903,0.000083413615],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023081193,0.0001401182,0.00039320232,0.00010320621,0.000030560317,0.0000049008913,0.00013075618,0.000058193953,0.000063986605],"category_scores_gemma":[0.00015154887,0.00007795722,0.000106265914,0.00035249977,0.000011735104,0.000040568622,0.000022847844,0.00019944823,0.000002206218],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001954584,0.00085056946,0.8961587,0.00021405569,0.00010509176,0.000043399774,0.00010186089,0.00013667533,0.08908304,0.00014825117,0.0035377715,0.009425145],"study_design_scores_gemma":[0.0017232358,0.0011521997,0.9846665,0.000079030666,0.00005533448,0.000035819165,0.000030846768,0.00027006457,0.0019378811,0.000015461515,0.009953163,0.00008044108],"about_ca_topic_score_codex":0.35923117,"about_ca_topic_score_gemma":0.84120584,"teacher_disagreement_score":0.48197463,"about_ca_system_score_codex":0.000101227255,"about_ca_system_score_gemma":0.00081324513,"threshold_uncertainty_score":0.64503574},"labels":[],"label_agreement":null},{"id":"W2073084844","doi":"10.1097/inf.0b013e3181bdbed5","title":"Invasive Pneumococcal Disease in Alaskan Children","year":2010,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":110,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Pneumococcal conjugate vaccine; Medicine; Serotype; Streptococcus pneumoniae; Pediatrics; Population; Pneumococcal infections; Pneumococcal disease; Environmental health; Demography; Virology; Biology; Antibiotics","score_opus":0.005258272057521189,"score_gpt":0.24095579345807647,"score_spread":0.23569752140055528,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2073084844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99447286,0.0001657737,0.000015852642,0.0025859398,0.0012020508,0.0005442257,0.000022374286,0.00010021729,0.00089071074],"genre_scores_gemma":[0.9939995,0.0004640776,0.0000043703026,0.0009402303,0.004349482,0.00004745449,0.0000069873245,0.00003797681,0.00014994993],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982714,0.00015454991,0.00043654678,0.00025329654,0.00039736956,0.00048685435],"domain_scores_gemma":[0.9977815,0.00019235347,0.00019150575,0.00043604494,0.00015229611,0.0012462627],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003976154,0.0002551713,0.00026025827,0.00048558178,0.0005741409,0.000101384685,0.00019239949,0.000098001074,0.0004152932],"category_scores_gemma":[0.0009879782,0.00016743214,0.00033681688,0.0006169021,0.00013889314,0.0001831308,0.00007076189,0.0017940953,0.00020823044],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009902053,0.00059779454,0.9966904,0.000026220907,0.00004696063,0.00035435762,0.000086280386,0.000120997734,0.0011548738,0.00006300007,0.00052033813,0.00023974678],"study_design_scores_gemma":[0.0015682047,0.00011386907,0.9941868,0.000016814953,0.00061644276,0.0014918203,0.000012822658,0.000047598467,0.000009618068,0.0012803276,0.00045417025,0.00020148588],"about_ca_topic_score_codex":0.00002728186,"about_ca_topic_score_gemma":0.00007555921,"teacher_disagreement_score":0.0031474307,"about_ca_system_score_codex":0.00010317964,"about_ca_system_score_gemma":0.0013081705,"threshold_uncertainty_score":0.77945507},"labels":[],"label_agreement":null},{"id":"W2073391739","doi":"10.1016/j.vaccine.2004.01.029","title":"Review of pneumococcal conjugate vaccine in adults: implications on clinical development","year":2004,"lang":"en","type":"review","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Thoracic Society; Merck","keywords":"Immunogenicity; Pneumococcal conjugate vaccine; Medicine; Conjugate; Conjugate vaccine; Pneumococcal infections; Immunology; Streptococcus pneumoniae; Virology; Biology; Antigen; Microbiology; Antibiotics","score_opus":0.07316765302375636,"score_gpt":0.419719190429967,"score_spread":0.3465515374062107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2073391739","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00014286563,0.9948283,0.0000073729775,0.0011797817,0.00027811728,0.0027640215,0.000043960266,0.000071871065,0.0006837345],"genre_scores_gemma":[0.00004241453,0.99716204,0.000086735155,0.0014568693,0.00023942416,0.0004857383,0.0003318113,0.00007218228,0.0001227592],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9954363,0.00021127649,0.0031185932,0.00066350994,0.00020446524,0.00036583893],"domain_scores_gemma":[0.99740565,0.00029007296,0.0008368227,0.0009602661,0.0002258947,0.00028131125],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00075693877,0.0005405477,0.0035895878,0.00051887706,0.00006245321,0.000005325697,0.00025671325,0.00045110122,0.0002333812],"category_scores_gemma":[0.0005427386,0.00037932294,0.0007575416,0.00104843,0.000014831943,0.000037552032,0.000092177055,0.001033876,0.00038267896],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004127456,0.0012311373,0.0015683762,0.2798213,0.00029567833,0.00003747044,0.0000123899945,3.7076143e-7,0.0000044023845,0.00014654084,0.0012371505,0.7156039],"study_design_scores_gemma":[0.0012598691,0.00040135861,0.0060993214,0.36040562,0.000511222,0.00013225492,0.0000011154874,9.78185e-8,0.0000014676684,0.0000059085273,0.630979,0.00020276179],"about_ca_topic_score_codex":0.000008267142,"about_ca_topic_score_gemma":0.000024756608,"teacher_disagreement_score":0.7154012,"about_ca_system_score_codex":0.0003622346,"about_ca_system_score_gemma":0.0017474361,"threshold_uncertainty_score":0.9998659},"labels":[],"label_agreement":null},{"id":"W2073540643","doi":"10.1097/inf.0b013e31819d97be","title":"Seven-Valent Pneumococcal Conjugate Vaccine in Pediatric Solid Organ Transplant Recipients","year":2009,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; SickKids Foundation; Hospital for Sick Children","funders":"","keywords":"Solid organ; Pneumococcal conjugate vaccine; Medicine; Organ transplantation; Conjugate; Immunology; Streptococcus pneumoniae; Microbiology; Biology; Transplantation; Internal medicine; Mathematics; Antibiotics","score_opus":0.008779596643989016,"score_gpt":0.26552181435008504,"score_spread":0.256742217706096,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2073540643","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99297905,0.0005886352,0.000104611594,0.0035903398,0.0011953802,0.0005873285,0.00002140825,0.00013847118,0.0007947866],"genre_scores_gemma":[0.98824173,0.0058638407,0.0000045971633,0.0013743098,0.0042781723,0.00002094309,0.000007700578,0.000038227692,0.00017046226],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99727064,0.00026957996,0.00084183534,0.0003356411,0.000554288,0.0007280188],"domain_scores_gemma":[0.99809515,0.00013101043,0.00031065074,0.00038347172,0.00019781027,0.00088193145],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006540277,0.00037020523,0.00047749843,0.0007597849,0.00058776926,0.00008500865,0.00021420792,0.00014530185,0.00018936809],"category_scores_gemma":[0.00021226093,0.00024933947,0.00037228208,0.0011385289,0.000031721724,0.00019631645,0.000028509632,0.001323047,0.00017350623],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003189558,0.0012087728,0.9946454,0.000046598518,0.000044683868,0.00079905137,0.00034472212,0.0005224082,0.00059756206,0.000017531158,0.000804805,0.00064951804],"study_design_scores_gemma":[0.003836433,0.00073073956,0.98930293,0.000039622995,0.0012771164,0.0032477702,0.000019640263,0.00012319308,0.00002081997,0.00073837733,0.00036370297,0.0002996604],"about_ca_topic_score_codex":0.0000074330796,"about_ca_topic_score_gemma":0.000012793005,"teacher_disagreement_score":0.005342467,"about_ca_system_score_codex":0.00029438187,"about_ca_system_score_gemma":0.0006541013,"threshold_uncertainty_score":0.9999959},"labels":[],"label_agreement":null},{"id":"W2073868414","doi":"10.1007/s10096-005-0081-z","title":"Bacteremic pneumococcal pneumonia associated with macrolide failure","year":2006,"lang":"en","type":"article","venue":"European Journal of Clinical Microbiology & Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen Elizabeth II Health Sciences Centre; St Mary's Hospital Centre","funders":"Sanofi","keywords":"Streptococcus pneumoniae; Pneumonia; Community-acquired pneumonia; Medicine; Clarithromycin; Intensive care medicine; Pneumococcal pneumonia; Microbiology; Internal medicine; Antibiotics; Biology; Helicobacter pylori","score_opus":0.01390279764634144,"score_gpt":0.2842011450662564,"score_spread":0.27029834741991493,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2073868414","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946004,0.0001774773,0.00010250923,0.0010426847,0.00068239286,0.00020309194,0.00006285776,0.00013080314,0.0029977432],"genre_scores_gemma":[0.9968844,0.000053899723,0.000023560358,0.0013528282,0.0013031819,0.000002034947,0.000052311323,0.00006492844,0.00026287668],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9959546,0.0014847151,0.0016831927,0.00033675245,0.00011041579,0.0004303724],"domain_scores_gemma":[0.99694234,0.00062807166,0.001196262,0.00029152582,0.0005391794,0.0004026261],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00092150975,0.00032324254,0.00099987,0.00024062602,0.00018888718,0.000041310355,0.0001946249,0.0001586045,0.00015319648],"category_scores_gemma":[0.0009907364,0.00021945855,0.00075311516,0.0002830984,0.0005848599,0.00011976637,0.00005893422,0.0010760761,0.00014817178],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023622405,0.0014612369,0.8079863,0.000017378396,0.0005484535,0.0013898296,0.000008846106,0.000047381778,0.18517824,0.000014431623,0.0022355558,0.0008760941],"study_design_scores_gemma":[0.004852688,0.0036444748,0.94093096,0.0002798831,0.0008372767,0.004633036,0.00001268917,0.0000017415406,0.00018704565,0.000043400712,0.044336207,0.00024057912],"about_ca_topic_score_codex":0.0000030560384,"about_ca_topic_score_gemma":0.000033015676,"teacher_disagreement_score":0.18499118,"about_ca_system_score_codex":0.00008192977,"about_ca_system_score_gemma":0.0003621627,"threshold_uncertainty_score":0.894926},"labels":[],"label_agreement":null},{"id":"W2073894190","doi":"10.1186/1471-2318-10-22","title":"Predictors of inhospital mortality and re-hospitalization in older adults with community-acquired pneumonia: a prospective cohort study","year":2010,"lang":"en","type":"article","venue":"BMC Geriatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dalhousie University; University of Toronto; McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Community-acquired pneumonia; Pneumonia; Prospective cohort study; Odds ratio; Confidence interval; Cohort study; Logistic regression; Internal medicine; Cohort; Pediatrics; Emergency medicine","score_opus":0.011000872503069066,"score_gpt":0.265369854304263,"score_spread":0.25436898180119394,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2073894190","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99651164,0.000019497007,0.000060612387,0.000020907442,0.00028326735,0.0026782474,0.00001665312,0.00007042082,0.00033877685],"genre_scores_gemma":[0.9995701,0.000012641154,0.00007060311,0.000018555964,0.00008071065,0.00017683239,0.000023238312,0.000026387532,0.000020936128],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99869317,0.0001412431,0.0003995522,0.00026731894,0.0003126257,0.00018607634],"domain_scores_gemma":[0.9988925,0.000073958,0.0001892062,0.00048011972,0.00024925589,0.00011495296],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00049221603,0.00018674649,0.0003953986,0.00021765218,0.00013535067,0.000018584613,0.00008029251,0.00014661525,0.000011488992],"category_scores_gemma":[0.00022434704,0.00014932618,0.000045307937,0.0006924754,0.00016255067,0.00014046575,0.00006729897,0.00039219233,0.0000011327561],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011229664,0.0019682248,0.99157345,0.00017609498,0.00008051299,0.000012602318,0.004872491,0.000007871931,0.0011472113,0.000020970796,0.0000058914025,0.000022375556],"study_design_scores_gemma":[0.003275248,0.0015530293,0.99143046,0.00006120246,0.00022916871,0.00001706109,0.0030250486,0.00007167322,0.00016196238,0.000014197253,0.0000092299015,0.0001517299],"about_ca_topic_score_codex":0.0006736764,"about_ca_topic_score_gemma":0.004694858,"teacher_disagreement_score":0.0040211817,"about_ca_system_score_codex":0.00005214301,"about_ca_system_score_gemma":0.00015798189,"threshold_uncertainty_score":0.60893446},"labels":[],"label_agreement":null},{"id":"W2078664992","doi":"10.1016/j.diagmicrobio.2007.03.024","title":"Antimicrobial resistance among invasive isolates of Streptococcus pneumoniae collected across Canada","year":2007,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dalhousie University; Queen Elizabeth II Health Sciences Centre","funders":"","keywords":"Streptococcus pneumoniae; Moxifloxacin; Broth microdilution; Gatifloxacin; Microbiology; Levofloxacin; Telithromycin; Penicillin; Erythromycin; Biology; Antimicrobial; Ofloxacin; Streptococcaceae; Antibiotic resistance; Antibacterial agent; Medicine; Virology; Antibiotics; Minimum inhibitory concentration; Ciprofloxacin","score_opus":0.004530863181511589,"score_gpt":0.23068669748772014,"score_spread":0.22615583430620856,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078664992","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99731636,0.0004356866,0.000036150497,0.00023876513,0.00036710326,0.0006455705,0.00045641512,0.00005994378,0.00044399028],"genre_scores_gemma":[0.99837935,0.00018996943,0.0000033333115,0.0010049732,0.0000757535,0.000027896378,0.000105449995,0.000019683213,0.00019361395],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986164,0.00007282126,0.00043489796,0.0003599346,0.000047618225,0.00046833252],"domain_scores_gemma":[0.99783456,0.0011372811,0.00019039291,0.0002482763,0.00023499636,0.00035446766],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015307526,0.00023468744,0.00040664762,0.00008125771,0.00032179168,0.000012206613,0.000065642096,0.00017028135,0.000052222884],"category_scores_gemma":[0.0016977488,0.00021271719,0.000095519186,0.00032623383,0.00054378196,0.00005612713,0.00005810624,0.00025167575,0.0000042210663],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010618784,0.00024290466,0.83275783,0.00020930503,0.00012460133,0.00026594312,0.00012451223,0.000008385095,0.16370697,0.000030280393,0.0023311747,0.00009187548],"study_design_scores_gemma":[0.0015205678,0.00017790035,0.9728569,0.00025990795,0.00018051834,0.00008891491,0.0000838868,0.0000016114865,0.020192642,0.000022768769,0.004372527,0.00024186097],"about_ca_topic_score_codex":0.011641905,"about_ca_topic_score_gemma":0.5107662,"teacher_disagreement_score":0.49912432,"about_ca_system_score_codex":0.000118421485,"about_ca_system_score_gemma":0.0007067281,"threshold_uncertainty_score":0.9949397},"labels":[],"label_agreement":null},{"id":"W2078922314","doi":"10.1016/j.ijantimicag.2006.04.007","title":"Call for the international adoption of microbiological breakpoints for fluoroquinolones and Streptococcus pneumoniae","year":2006,"lang":"en","type":"article","venue":"International Journal of Antimicrobial Agents","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Manitoba","funders":"Canadian Institutes of Health Research; Manitoba Health Research Council","keywords":"Streptococcus pneumoniae; Levofloxacin; Ciprofloxacin; Breakpoint; Microbiology; Medicine; Biology; Gene; Genetics; Antibiotics","score_opus":0.020437000273661132,"score_gpt":0.2959078916405345,"score_spread":0.27547089136687336,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078922314","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98544455,0.000049667084,0.0036142932,0.008291805,0.001849173,0.0004311738,0.00023944365,0.0000085260635,0.000071379254],"genre_scores_gemma":[0.9974603,0.000121288635,0.0005981876,0.00069494423,0.00084805576,0.000010631295,0.000055487555,0.000011182394,0.00019992299],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99901694,0.000016457341,0.0005392432,0.00012450329,0.0001798,0.00012303492],"domain_scores_gemma":[0.9984197,0.0001586812,0.0004262229,0.00006921133,0.00088679814,0.000039359318],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002183738,0.000111713154,0.00021595212,0.00015990052,0.000069040696,0.000036274618,0.00023453312,0.00008685569,0.000021676971],"category_scores_gemma":[0.00010720199,0.00007304147,0.00026393574,0.000041155912,0.000122040736,0.00009596078,0.00004990834,0.00011607851,0.0000020077914],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00051259814,0.0004107915,0.045312062,0.000030955147,0.0004893815,0.000015711503,0.000043306052,0.00015398707,0.93544984,0.00022821056,0.013912859,0.0034403077],"study_design_scores_gemma":[0.01135995,0.0014435364,0.62517107,0.00061431126,0.0005968556,0.002532818,0.00009894581,0.00091860193,0.13594598,0.00054428645,0.2204359,0.00033772457],"about_ca_topic_score_codex":0.000015479249,"about_ca_topic_score_gemma":0.0000104860055,"teacher_disagreement_score":0.79950386,"about_ca_system_score_codex":0.000063825486,"about_ca_system_score_gemma":0.00007372201,"threshold_uncertainty_score":0.29785448},"labels":[],"label_agreement":null},{"id":"W2079522835","doi":"10.1016/j.ijantimicag.2004.06.010","title":"Pharmacodynamic target attainment analysis against Streptococcus pneumoniae using levofloxacin 500mg, 750mg and 1000mg once daily in plasma (P) and epithelial lining fluid (ELF) of hospitalized patients with community acquired pneumonia (CAP)","year":2004,"lang":"en","type":"article","venue":"International Journal of Antimicrobial Agents","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Winnipeg; Health Sciences Centre; University Health Network; University of Toronto; University of Manitoba","funders":"Canadian Institutes of Health Research; University of Toronto; Canadian Thoracic Society","keywords":"Levofloxacin; Streptococcus pneumoniae; Medicine; Pharmacokinetics; Community-acquired pneumonia; Pharmacodynamics; Pneumonia; Internal medicine; Area under the curve; Cmax; Pharmacology; Antibiotics; Microbiology; Biology","score_opus":0.01304821590444717,"score_gpt":0.28246922152323123,"score_spread":0.26942100561878407,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2079522835","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984945,0.00001944417,0.0003400337,0.0002891204,0.00032666922,0.00030474135,0.00018377873,0.0000108774675,0.000030842242],"genre_scores_gemma":[0.9987208,0.00013473765,0.0006466895,0.0003296248,0.000078606274,0.00000165128,0.000056331217,0.000025417618,0.000006123291],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978909,0.00016822138,0.0009332237,0.00022003209,0.0005381957,0.0002494226],"domain_scores_gemma":[0.99835354,0.00006085078,0.0007655872,0.00015562036,0.00048569465,0.00017869884],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003587606,0.00026735285,0.00064512575,0.00082909345,0.00015018314,0.000058642614,0.00023738023,0.000101504986,0.000015111444],"category_scores_gemma":[0.000055838205,0.00022491717,0.00019228914,0.0003794011,0.00021490945,0.00035776506,0.00013954687,0.00039341155,8.897322e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041884457,0.0008179294,0.6054175,0.00003746033,0.0012816575,0.0001293188,0.0008116935,0.015424234,0.37524682,0.0000017755814,0.0000033137815,0.00040946883],"study_design_scores_gemma":[0.014463708,0.0007869391,0.9626969,0.001025917,0.0007383622,0.00011673506,0.00022152612,0.0036933767,0.015849395,0.000016613742,0.00008474496,0.00030574817],"about_ca_topic_score_codex":0.0001958325,"about_ca_topic_score_gemma":0.00006285673,"teacher_disagreement_score":0.35939744,"about_ca_system_score_codex":0.00035125148,"about_ca_system_score_gemma":0.00020370055,"threshold_uncertainty_score":0.9171856},"labels":[],"label_agreement":null},{"id":"W2080410213","doi":"10.1503/cmaj.111143","title":"Management of community-acquired pneumonia in the emergency department","year":2012,"lang":"en","type":"article","venue":"Canadian Medical Association Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University Health Network","funders":"","keywords":"Community-acquired pneumonia; Pneumonia; Medicine; Emergency department; Myocardial infarction; Intensive care medicine; Emergency medicine; Medical emergency; Internal medicine; Nursing","score_opus":0.018864762446560716,"score_gpt":0.2870810398088795,"score_spread":0.2682162773623188,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2080410213","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9630918,0.00017633804,0.000014486019,0.024578989,0.00071469875,0.00015221976,0.0000065999407,0.0000054919797,0.011259379],"genre_scores_gemma":[0.9949503,0.0002301745,0.000011004335,0.00424773,0.00035291954,0.0000125991155,0.0000054227025,0.0000060188636,0.00018384389],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99809927,0.00041283306,0.00037339854,0.000033147364,0.00073736085,0.00034401123],"domain_scores_gemma":[0.99894375,0.000060998595,0.00013156646,0.00012601768,0.00009578824,0.0006418753],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0025397725,0.00006932188,0.0001433124,0.00013694228,0.0002501116,0.000008200107,0.0001427205,0.00013163919,0.001131363],"category_scores_gemma":[0.00018653559,0.00004834756,0.000084023515,0.0002856837,0.000023819512,0.000065640925,0.000011506282,0.00059640454,0.000048277612],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000005270097,0.00040013055,0.95500416,0.000041794698,0.00022661532,0.00019746933,0.0023462,0.0000018906752,0.00013159332,0.00071128143,0.02393498,0.016998634],"study_design_scores_gemma":[0.0004131382,0.000049914153,0.77222675,0.00004336751,0.00004583208,0.00024974984,0.0018947988,0.000003896461,0.0000067302994,0.000045115565,0.22497982,0.000040889954],"about_ca_topic_score_codex":0.00059772475,"about_ca_topic_score_gemma":0.0047779446,"teacher_disagreement_score":0.20104483,"about_ca_system_score_codex":0.00047859945,"about_ca_system_score_gemma":0.0003177305,"threshold_uncertainty_score":0.9997817},"labels":[],"label_agreement":null},{"id":"W2080410451","doi":"10.1503/cmaj.051150","title":"Progress in the prevention of pneumococcal infection","year":2005,"lang":"en","type":"article","venue":"Canadian Medical Association Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Alberta Children's Hospital Foundation; Children's Hospital Foundation","keywords":"Streptococcus pneumoniae; Pneumococcal infections; Medicine; Pathogen; Immunology; Human pathogen; Intensive care medicine; Microbiology; Biology; Antibiotics; Bacteria","score_opus":0.009880369899625747,"score_gpt":0.284505144092241,"score_spread":0.2746247741926152,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2080410451","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9414498,0.00008418201,0.000025667843,0.055261564,0.00024841737,0.0001523857,0.0000016792225,0.0000074596483,0.002768799],"genre_scores_gemma":[0.99576,0.000059822254,0.000015092617,0.0030224612,0.000998213,0.00001104259,0.0000026331966,0.0000049764567,0.00012575832],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985069,0.00018902746,0.00034283934,0.00006491827,0.0006852105,0.00021112528],"domain_scores_gemma":[0.9991919,0.00005728025,0.00014870935,0.00006490665,0.0001787789,0.00035843314],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015124097,0.000057680903,0.00013104337,0.0002224419,0.00011405519,0.000020542038,0.00006407786,0.00021496475,0.00060902047],"category_scores_gemma":[0.00047549166,0.000040047045,0.00009570532,0.00031167018,0.000036747493,0.00009220924,0.0000035210255,0.0007002977,0.000038577637],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000004484135,0.00014469949,0.91570926,0.000009941763,0.000037283487,0.000060456652,0.00032730273,0.0000059652425,0.0001035939,0.00014352442,0.0037247436,0.07972873],"study_design_scores_gemma":[0.00062227395,0.00011268695,0.76197875,0.00007164289,0.00002402806,0.00063486514,0.00008308264,0.000106811596,0.000025527092,0.00004675406,0.23625587,0.00003771165],"about_ca_topic_score_codex":0.00025433925,"about_ca_topic_score_gemma":0.023267586,"teacher_disagreement_score":0.23253112,"about_ca_system_score_codex":0.00052706915,"about_ca_system_score_gemma":0.0014902853,"threshold_uncertainty_score":0.99455523},"labels":[],"label_agreement":null},{"id":"W2080982912","doi":"10.1002/ebch.303","title":"Commentaries on ‘Short‐course versus long‐course antibiotic therapy for non‐severe community‐acquired pneumonia in children aged 2 months to 59 months’","year":2009,"lang":"en","type":"article","venue":"Evidence-Based Child Health A Cochrane Review Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario","funders":"","keywords":"Medicine; Cochrane collaboration; Systematic review; Pneumonia; Community-acquired pneumonia; Short course; Antibiotic therapy; Intensive care medicine; Antibiotics; Pediatrics; Family medicine; Alternative medicine; MEDLINE; Internal medicine; Cochrane Library; Pathology","score_opus":0.05564303550787474,"score_gpt":0.3976566847768458,"score_spread":0.34201364926897104,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2080982912","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.45376983,0.23298219,0.00012873056,0.30388907,0.00072644674,0.008201652,0.000068212976,0.000119280274,0.000114616174],"genre_scores_gemma":[0.7142106,0.16532624,0.00016400291,0.11947968,0.00058827776,0.000083650295,0.00007115812,0.000059123853,0.000017251832],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.99440986,0.0013523422,0.0016655012,0.0005131142,0.00089425384,0.0011649193],"domain_scores_gemma":[0.9956206,0.0010661037,0.0006158908,0.0011302414,0.00033267072,0.0012344695],"candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.0036974088,0.00067874294,0.0018743497,0.00044737736,0.0018053516,0.00011325691,0.0005758997,0.00020224456,0.00009991086],"category_scores_gemma":[0.00090664957,0.0005443827,0.00069211016,0.00090850785,0.00014280074,0.00034640438,0.000033193228,0.0019826498,0.000036798196],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.014556175,0.01669247,0.3914431,0.0103925895,0.0013460239,0.0005195799,0.0021298241,0.0018053057,0.0013775539,0.00006232551,0.08443501,0.47524002],"study_design_scores_gemma":[0.010377274,0.015741682,0.86290663,0.10433119,0.00045678558,0.0008665727,0.00010716796,0.00004773042,0.00016466905,0.000016352025,0.0043638535,0.00062009564],"about_ca_topic_score_codex":0.00018873834,"about_ca_topic_score_gemma":0.0004914602,"teacher_disagreement_score":0.47461993,"about_ca_system_score_codex":0.00073582504,"about_ca_system_score_gemma":0.0017838113,"threshold_uncertainty_score":0.9997008},"labels":[],"label_agreement":null},{"id":"W2081436383","doi":"10.1016/j.ypmed.2014.07.015","title":"A review of acute care interventions to improve inpatient pneumococcal vaccination","year":2014,"lang":"en","type":"review","venue":"Preventive Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Psychological intervention; Vaccination; Pneumococcal vaccination; Intensive care medicine; Streptococcus pneumoniae; Immunology; Nursing; Antibiotics; Microbiology","score_opus":0.03832964219971371,"score_gpt":0.417794216111201,"score_spread":0.3794645739114873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2081436383","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000082075485,0.98974717,0.0009986804,0.00060595566,0.0009779104,0.0052757068,0.00014031334,0.00006022978,0.0021858134],"genre_scores_gemma":[0.000054247765,0.9960081,0.00005828957,0.00074265996,0.00046999136,0.0010735141,0.0006307965,0.00006598578,0.0008964351],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99646837,0.00042230345,0.0018045268,0.0005803053,0.0004267429,0.00029773815],"domain_scores_gemma":[0.99698395,0.00014810386,0.0010101995,0.0007447501,0.0007845399,0.00032843297],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006038267,0.0005191901,0.003491644,0.0006923092,0.00007829005,0.0000044728827,0.00024079075,0.00023282238,0.00060840696],"category_scores_gemma":[0.0007287825,0.0003472931,0.0015447404,0.0008809144,0.00008098598,0.00004923905,0.00017657726,0.00057024445,0.00012851914],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000004798771,0.00013172027,0.0000099049375,0.42778978,0.0005141995,0.000007236759,0.00012702397,1.7441474e-8,0.000049421455,0.00003406332,0.001420917,0.5699109],"study_design_scores_gemma":[0.00039366464,0.0015495259,0.0001416359,0.4102575,0.009804513,0.000052219002,0.000022307237,2.2409817e-7,0.000006095553,0.00000720406,0.57760656,0.00015854725],"about_ca_topic_score_codex":0.0000104184455,"about_ca_topic_score_gemma":0.0000057607826,"teacher_disagreement_score":0.57618564,"about_ca_system_score_codex":0.00035346652,"about_ca_system_score_gemma":0.00029764744,"threshold_uncertainty_score":0.9998979},"labels":[],"label_agreement":null},{"id":"W2081456183","doi":"10.1016/s1098-3015(10)75101-9","title":"PIN43 COST-EFFECTIVENESS OF 13-VALENT AND 10-VALENT PNEUMOCOCCAL CONJUGATE VACCINATION RELATIVE TO 7-VALENT PNEUMOCOCCAL CONJUGATE VACCINATION IN CANADA","year":2009,"lang":"en","type":"article","venue":"Value in Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Conjugate; Vaccination; Pneumococcal vaccination; Pneumococcal conjugate vaccine; Medicine; Virology; Streptococcus pneumoniae; Microbiology; Mathematics; Biology; Antibiotics","score_opus":0.032753104143381985,"score_gpt":0.31742763592056944,"score_spread":0.28467453177718743,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2081456183","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9881848,0.0003739123,0.00014680777,0.0058438485,0.00041563256,0.0042287083,0.00005467902,0.000043462234,0.0007081219],"genre_scores_gemma":[0.9983591,0.00042050311,0.000038418773,0.0007850483,0.00006629065,0.00020485919,0.000034256016,0.000030086634,0.000061463084],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99591756,0.0010690026,0.0012020255,0.00064131245,0.00052288774,0.00064720825],"domain_scores_gemma":[0.997928,0.00058802206,0.00036747646,0.00034819436,0.0002744102,0.0004938809],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0015414456,0.0003542578,0.00088347873,0.0006399431,0.00014253691,0.000015895295,0.000115561095,0.00017068052,0.000042224434],"category_scores_gemma":[0.00046898093,0.00034184832,0.00009017713,0.00081660214,0.000029087587,0.00020996468,0.00005149271,0.00056711514,0.000012064446],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027576026,0.0028721201,0.77428263,0.005170495,0.0001807776,0.0003377277,0.0042419275,0.068470664,0.08920461,0.0048185824,0.00043079795,0.047232058],"study_design_scores_gemma":[0.0039235526,0.0019393624,0.9834417,0.0011288045,0.00003451564,0.000060118215,0.00019125942,0.003972944,0.0034588655,0.0004183042,0.0011453194,0.0002852204],"about_ca_topic_score_codex":0.17268704,"about_ca_topic_score_gemma":0.11850695,"teacher_disagreement_score":0.2091591,"about_ca_system_score_codex":0.003900267,"about_ca_system_score_gemma":0.0023044439,"threshold_uncertainty_score":0.9999236},"labels":[],"label_agreement":null},{"id":"W2081593522","doi":"10.1007/s10096-004-1214-5","title":"Efficacy and safety of sequential moxifloxacin for treatment of community-acquired pneumonia associated with atypical pathogens","year":2004,"lang":"en","type":"review","venue":"European Journal of Clinical Microbiology & Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôpital Fleurimont","funders":"Bayer Corporation","keywords":"Moxifloxacin; Medicine; Pneumonia; Internal medicine; Community-acquired pneumonia; Medical microbiology; Antimicrobial; Population; Antibiotics; Microbiology; Immunology; Biology","score_opus":0.08684622890329632,"score_gpt":0.3886665086833071,"score_spread":0.3018202797800108,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2081593522","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4601246,0.5357587,0.00016139844,0.00006777528,0.00068330235,0.0016051665,0.0014555638,0.000047642246,0.000095834184],"genre_scores_gemma":[0.20489185,0.7941664,0.000039192717,0.000086876746,0.0003945071,0.000009816122,0.00028683632,0.00009692291,0.000027583368],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9921437,0.0042141257,0.003021253,0.00025134295,0.00008293889,0.00028664316],"domain_scores_gemma":[0.99275666,0.0027770442,0.0032038582,0.00039664842,0.0005100588,0.0003557419],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0011235635,0.00048274058,0.0042202114,0.00028494233,0.00018685473,0.000010292822,0.00018071041,0.0003084861,0.00001879982],"category_scores_gemma":[0.0017171946,0.00030148405,0.0018396432,0.00022492361,0.0011023051,0.00003775232,0.00006817395,0.0004943376,0.000003682175],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.010252134,0.037482128,0.037367664,0.017406994,0.030732414,0.0010456166,0.00044767902,0.000074440046,0.0073654195,0.00006317946,0.00022066807,0.8575417],"study_design_scores_gemma":[0.04685281,0.09651674,0.12813742,0.04009292,0.047354694,0.0055757603,0.000054212313,5.889347e-7,0.000047738104,0.000032408145,0.63440937,0.00092533405],"about_ca_topic_score_codex":0.0000023340529,"about_ca_topic_score_gemma":0.0000059698964,"teacher_disagreement_score":0.8566163,"about_ca_system_score_codex":0.00016700078,"about_ca_system_score_gemma":0.0010530902,"threshold_uncertainty_score":0.99994373},"labels":[],"label_agreement":null},{"id":"W2082311580","doi":"10.1016/j.vaccine.2009.03.087","title":"Challenges in the evaluation and licensing of new pneumococcal vaccines, 7–8 July 2008, Ottawa, Canada","year":2009,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Canada","funders":"Health Canada","keywords":"Pneumococcal conjugate vaccine; Licensure; Medicine; Pneumococcal disease; Streptococcus pneumoniae; Conjugate vaccine; Immunization; Conjugate; Pneumococcal infections; Harmonization; Environmental health; Immunology; Antibiotics; Antigen; Biology","score_opus":0.05016041730062211,"score_gpt":0.31141600977695183,"score_spread":0.26125559247632973,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2082311580","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9470047,0.004541829,0.0000036160022,0.044166747,0.00010939371,0.00041559592,0.0000013154529,0.000013966399,0.0037428585],"genre_scores_gemma":[0.9978715,0.00048077523,0.000016726644,0.0013488336,0.00019662199,0.000003657324,0.000004010991,0.0000060168863,0.000071850984],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9991368,0.00007041914,0.00024823486,0.0001579726,0.0002362296,0.00015033092],"domain_scores_gemma":[0.99943835,0.00006671918,0.000068900976,0.00022318825,0.00012649735,0.00007632476],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037728122,0.00010341346,0.00020882161,0.00010122577,0.000047337307,0.0000056521044,0.00004987433,0.00005386804,0.00002444367],"category_scores_gemma":[0.00019169775,0.00006804881,0.000025573308,0.00022608985,0.0000028897466,0.000047539655,0.0000072754624,0.00015536604,0.000001829618],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019299328,0.00062226,0.102083445,0.00018539188,0.000110055196,0.00012775748,0.002653771,0.00022691136,0.14265667,0.0005147985,0.04484428,0.7057817],"study_design_scores_gemma":[0.0015249891,0.00026127332,0.9581046,0.000073985015,0.0000806471,0.00016635502,0.0001960795,0.00022768912,0.00046865238,0.000112348825,0.038713332,0.000070044436],"about_ca_topic_score_codex":0.015874105,"about_ca_topic_score_gemma":0.24601278,"teacher_disagreement_score":0.85602117,"about_ca_system_score_codex":0.000058608424,"about_ca_system_score_gemma":0.0004147416,"threshold_uncertainty_score":0.99067926},"labels":[],"label_agreement":null},{"id":"W2082551934","doi":"10.1179/joc.2000.12.4.299","title":"Assessment of the Susceptibility of<i>Streptococcus pneumoniae</i>to Cefaclor and Loracarbef in 13 Countries","year":2000,"lang":"en","type":"article","venue":"Journal of Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Cefaclor; Penicillin; Streptococcus pneumoniae; Microbiology; Antibacterial agent; Antibiotics; Medicine; Cephalosporin; Biology","score_opus":0.0073321996998420265,"score_gpt":0.29890369986538057,"score_spread":0.29157150016553857,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2082551934","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936705,0.00011246316,0.000012061845,0.00505851,0.000082052975,0.00026485306,0.0000058327714,0.0000033800925,0.0007902986],"genre_scores_gemma":[0.998141,0.00040142995,0.000059820104,0.0011995425,0.0000705109,0.0000025986647,1.1870771e-7,0.000009614523,0.00011538175],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989097,0.00005938281,0.0005379355,0.00009089945,0.00028728903,0.0001147788],"domain_scores_gemma":[0.99923325,0.00006705957,0.0002550117,0.00020783333,0.0001602685,0.00007656551],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003886478,0.00009870629,0.00038978795,0.00009891179,0.000029069035,0.00000712208,0.00009199929,0.000065126536,0.00019469069],"category_scores_gemma":[0.000022104332,0.000059586677,0.00013638598,0.00022470935,0.00013515516,0.000063380634,0.00000912359,0.00023306551,7.88681e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008665428,0.00024121141,0.78182924,0.00005688649,0.000058040197,0.000004997519,0.00040222864,0.0000672861,0.2100699,0.000011518696,0.00009766695,0.0070743873],"study_design_scores_gemma":[0.0014981604,0.00061459094,0.96073556,0.00018814,0.000037490114,0.000057114612,0.000073876596,0.000018921304,0.02402498,0.00009112179,0.012607575,0.00005249266],"about_ca_topic_score_codex":0.000012704928,"about_ca_topic_score_gemma":0.000037118807,"teacher_disagreement_score":0.18604492,"about_ca_system_score_codex":0.00006287613,"about_ca_system_score_gemma":0.00020046758,"threshold_uncertainty_score":0.24298742},"labels":[],"label_agreement":null},{"id":"W2082596529","doi":"10.1086/599827","title":"Changing Epidemiology of Invasive Pneumococcal Disease in Canada, 1998–2007: Update from the Calgary‐Area<i>Streptococcus pneumoniae</i>Research (CASPER) Study","year":2009,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":177,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia; BC Children's Hospital; University of Alberta; Alberta Health Services; Calgary Laboratory Services; Alberta Children's Hospital; Alberta Hospital Edmonton; University of Calgary","funders":"Alberta Children's Hospital Foundation; Children's Hospital Foundation; Calgary Laboratory Services; GlaxoSmithKline","keywords":"Pneumococcal disease; Medicine; Streptococcus pneumoniae; Epidemiology; Pneumococcal infections; Vaccination; Pneumococcal conjugate vaccine; Pneumococcal vaccine; Conjugate vaccine; Environmental health; Virology; Immunology; Immunization; Microbiology; Internal medicine; Antibody","score_opus":0.09082124682860274,"score_gpt":0.4021662640223532,"score_spread":0.3113450171937505,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2082596529","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99267536,0.0008456327,0.000014192242,0.0030255327,0.0007840778,0.002133107,0.00020972223,0.000089919864,0.000222463],"genre_scores_gemma":[0.9931263,0.00035141743,0.0000010293234,0.0054464643,0.00068879075,0.00023876214,0.00008399076,0.00003248816,0.00003077298],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99364245,0.0023706646,0.0016304592,0.00087337836,0.00052233716,0.0009607254],"domain_scores_gemma":[0.98799133,0.009295251,0.00033678103,0.0010817242,0.0002553902,0.0010395482],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0016530039,0.00037723087,0.0012392128,0.00030226225,0.00038285775,0.000017663504,0.0003636056,0.00016325637,0.0001697209],"category_scores_gemma":[0.009735964,0.00026378318,0.00045155277,0.0009913534,0.0005481773,0.000110639274,0.00020997493,0.0012807634,0.00006333604],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012370782,0.0031681545,0.992011,0.00002651798,0.00018090886,0.0005975505,0.0001122878,0.00017430811,0.00012899422,0.000058328103,0.0009019181,0.0025163288],"study_design_scores_gemma":[0.0021909706,0.0012763587,0.9926077,0.00022097437,0.00033560552,0.000004736437,0.00055990345,0.00031969947,0.000011310847,0.0012372024,0.0009873755,0.00024817244],"about_ca_topic_score_codex":0.09742318,"about_ca_topic_score_gemma":0.35142478,"teacher_disagreement_score":0.2540016,"about_ca_system_score_codex":0.00047171448,"about_ca_system_score_gemma":0.0036405802,"threshold_uncertainty_score":0.99998146},"labels":[],"label_agreement":null},{"id":"W2083324700","doi":"10.1371/journal.pone.0032134","title":"Streptococcus pneumoniae Serotype-2 Childhood Meningitis in Bangladesh: A Newly Recognized Pneumococcal Infection Threat","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Johns Hopkins Bloomberg School of Public Health; National Institute for Health and Care Research; Society for the Study of French History; Johns Hopkins University; World Health Organization; National Institutes of Health; GAVI Alliance","keywords":"Streptococcus pneumoniae; Serotype; Meningitis; Bacteremia; Medicine; Pneumococcal conjugate vaccine; Pneumococcal infections; Blood culture; Sepsis; Virology; Microbiology; Immunology; Biology; Pediatrics; Antibiotics","score_opus":0.04424426378891542,"score_gpt":0.2620721977128071,"score_spread":0.2178279339238917,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083324700","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9900708,0.00015880515,0.000013851566,0.0008175143,0.00019851983,0.001276392,0.000014828802,0.0003131371,0.007136136],"genre_scores_gemma":[0.9978014,0.00014526307,0.00014137656,0.0002818147,0.0006729083,0.0003779702,0.00004524824,0.0000614452,0.00047255924],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9980439,0.0001225289,0.00045237367,0.00035247713,0.0003735804,0.0006551537],"domain_scores_gemma":[0.9989061,0.00008825597,0.00012184042,0.00039067224,0.00011106887,0.00038210448],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002710667,0.0002896397,0.00055970025,0.00038460369,0.00015304808,0.000031304946,0.00007090741,0.00026624763,0.0004947556],"category_scores_gemma":[0.00022016473,0.00026719802,0.00015518231,0.00062300375,0.000063472944,0.00035511368,0.000057739195,0.00063449616,0.00053362857],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025815762,0.0037659968,0.67833877,0.00007587297,0.00020187665,0.00001744599,0.00041181527,0.000002046193,0.31529355,0.000023375382,0.00003340051,0.0018100265],"study_design_scores_gemma":[0.002564848,0.0005134748,0.9708787,0.0005318358,0.0003735934,0.00007021703,0.000042130934,0.000049407518,0.023750106,0.00006545834,0.0008587772,0.0003014554],"about_ca_topic_score_codex":0.000105209365,"about_ca_topic_score_gemma":0.00012840338,"teacher_disagreement_score":0.2925399,"about_ca_system_score_codex":0.00021754172,"about_ca_system_score_gemma":0.00011183954,"threshold_uncertainty_score":0.999978},"labels":[],"label_agreement":null},{"id":"W2083453763","doi":"10.1128/aac.44.12.3481-3482.2000","title":"Influences of Different Factors on Prevalence of Ciprofloxacin Resistance in <b> <i>Streptococcus pneumoniae</i> in Spain </b>","year":2000,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Ciprofloxacin; Streptococcus pneumoniae; Microbiology; Medicine; Amoxicillin; Antibacterial agent; Penicillin; Serotype; Biology; Antibiotics","score_opus":0.012761990730313852,"score_gpt":0.2637996555787821,"score_spread":0.25103766484846823,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083453763","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982269,0.000026291917,4.930548e-7,0.00075186486,0.000029725266,0.00035101396,0.0000213712,0.000009934316,0.0005824178],"genre_scores_gemma":[0.99681586,0.0015585519,0.000006571005,0.0011318253,0.0000136110475,0.0000070504425,0.0000025673237,0.000011719499,0.00045226942],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990612,0.00004365759,0.000373101,0.00022679908,0.00011891066,0.00017632578],"domain_scores_gemma":[0.9996352,0.00003405338,0.000093812734,0.00017049581,0.000019679186,0.000046727546],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007398339,0.00015415622,0.00034470888,0.00013457089,0.000024622685,0.000004908189,0.00007086819,0.000086008564,0.00018999916],"category_scores_gemma":[0.000007902904,0.000115699244,0.000066701505,0.00020669709,0.00012678078,0.00004430628,0.000007605781,0.0001343468,0.0000015812591],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000120068005,0.00048032316,0.7997764,0.00026042922,0.000014471771,0.0000057948223,0.00060299435,0.000007855317,0.19684196,0.000010370506,0.000103481405,0.001775886],"study_design_scores_gemma":[0.0013813565,0.0001799614,0.92432183,0.0006680885,0.000010761379,8.6041223e-7,0.000025606014,0.0000044357316,0.07163051,0.000023553732,0.0016541413,0.00009890633],"about_ca_topic_score_codex":0.000046710178,"about_ca_topic_score_gemma":0.000086132066,"teacher_disagreement_score":0.12521145,"about_ca_system_score_codex":0.00002430284,"about_ca_system_score_gemma":0.000026141732,"threshold_uncertainty_score":0.4718078},"labels":[],"label_agreement":null},{"id":"W2083680181","doi":"10.1097/inf.0b013e3182748ada","title":"The 13-Valent Pneumococcal Conjugate Vaccine for Invasive Pneumococcal Disease in Alaska Native Children","year":2012,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Pneumococcal disease; Serotype; Adverse effect; Pediatrics; Streptococcus pneumoniae; Immunogenicity; Internal medicine; Immunology; Antibody; Microbiology; Antibiotics","score_opus":0.01021242928359668,"score_gpt":0.26816818553837934,"score_spread":0.2579557562547827,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083680181","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98918664,0.0020445993,0.00009583757,0.004680661,0.001510845,0.0020121876,0.00008855698,0.00008995398,0.00029069762],"genre_scores_gemma":[0.9899555,0.00245416,0.000002866112,0.00080060435,0.006122684,0.00038795007,0.00001652969,0.00006365205,0.00019609473],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99699473,0.00042450693,0.0007491528,0.00029811842,0.00050374767,0.0010297495],"domain_scores_gemma":[0.9961639,0.0011423837,0.00041730233,0.000462402,0.0003395746,0.0014744493],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0011506688,0.00041132033,0.00041558192,0.00035718948,0.0016601188,0.00013646197,0.00027831836,0.00010686914,0.00005343858],"category_scores_gemma":[0.0017914172,0.00022997241,0.0005830486,0.0005999552,0.00014914834,0.0003246408,0.000117426054,0.0010912295,0.0000824535],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00059322896,0.00088545465,0.99580246,0.000059910835,0.00019476525,0.000042866614,0.00029510495,0.0003328371,0.00017516535,0.00012569856,0.0011537598,0.00033872036],"study_design_scores_gemma":[0.0034224477,0.0003155674,0.991436,0.000039992938,0.0013566376,0.0006068149,0.00007999704,0.00009431538,0.000021654314,0.001114071,0.0012189393,0.00029358026],"about_ca_topic_score_codex":0.000015461705,"about_ca_topic_score_gemma":0.000036662834,"teacher_disagreement_score":0.004611839,"about_ca_system_score_codex":0.00038649692,"about_ca_system_score_gemma":0.0010179534,"threshold_uncertainty_score":0.9996396},"labels":[],"label_agreement":null},{"id":"W2083725603","doi":"10.1007/s10096-006-0183-2","title":"Addition of a macrolide to a ß-lactam in bacteremic pneumococcal pneumonia","year":2006,"lang":"en","type":"article","venue":"European Journal of Clinical Microbiology & Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":57,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre","funders":"","keywords":"Medicine; Internal medicine; Pneumonia; Case fatality rate; Regimen; Community-acquired pneumonia; Logistic regression; Univariate analysis; Multivariate analysis; Epidemiology","score_opus":0.016260621278495493,"score_gpt":0.3170978086950204,"score_spread":0.30083718741652493,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083725603","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955843,0.00012733183,0.00009259696,0.00066338177,0.00069802906,0.00024619934,0.000091512185,0.000037392074,0.0024592215],"genre_scores_gemma":[0.99782324,0.000071234506,0.000037930145,0.001080281,0.0008473241,0.0000031789996,0.000025390455,0.000034628956,0.0000768014],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9960977,0.001125364,0.0021230304,0.00026637455,0.00008012782,0.00030743054],"domain_scores_gemma":[0.99781233,0.0004861741,0.00083556835,0.00024265166,0.00031344878,0.00030983373],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009162984,0.00021695287,0.0009060638,0.000480896,0.000054852815,0.000012962575,0.00015806749,0.0001084191,0.00019560727],"category_scores_gemma":[0.0010159357,0.00017320745,0.0006336415,0.00034243418,0.00027010916,0.00008522872,0.0000649817,0.000637485,0.000118547716],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033940648,0.0013811091,0.54985803,0.00003336219,0.00009581225,0.00043010048,0.000017229024,0.00007524531,0.44375545,0.0000133110225,0.0010172182,0.002983761],"study_design_scores_gemma":[0.0032091145,0.0029894393,0.9629336,0.00033009442,0.00022201268,0.0016119077,0.000013529505,0.0000018622919,0.0006589748,0.00006725966,0.02781008,0.00015211811],"about_ca_topic_score_codex":0.000009517279,"about_ca_topic_score_gemma":0.00002963071,"teacher_disagreement_score":0.44309646,"about_ca_system_score_codex":0.00006921356,"about_ca_system_score_gemma":0.0002513275,"threshold_uncertainty_score":0.70631945},"labels":[],"label_agreement":null},{"id":"W2084303726","doi":"10.1111/j.1574-695x.2006.00093.x","title":"Polymorphism of the major surface epitope of the CopB outer membrane protein of<i>Moraxella catarrhalis</i>","year":2006,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Women's Health Research Institute","funders":"","keywords":"Epitope; Moraxella catarrhalis; Biology; Polyclonal antibodies; Microbiology; Epitope mapping; Recombinant DNA; Antigen; Gene; Genetics; Haemophilus influenzae","score_opus":0.005430505579206094,"score_gpt":0.21577394238003242,"score_spread":0.21034343680082632,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084303726","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9841108,0.0020990365,0.000015131741,0.011363336,0.001153919,0.00060791546,0.0001038843,0.000020578585,0.00052545307],"genre_scores_gemma":[0.9975196,0.000047447596,0.00003054251,0.0009188646,0.000106214,0.000014925663,0.000024446521,0.0000188587,0.0013190928],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997984,0.0004639764,0.0007889655,0.00026329458,0.00014232368,0.00035745493],"domain_scores_gemma":[0.99841744,0.00016959003,0.00044226815,0.000765889,0.0001549541,0.000049834915],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00037618147,0.00020366487,0.0007101607,0.00006991444,0.00010473656,0.0000013549702,0.00055786927,0.0006409267,0.00041674564],"category_scores_gemma":[0.00026985395,0.00010743979,0.00031582,0.00032422997,0.0031424204,0.000017425613,0.00027596302,0.0006493256,0.000020714415],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000791188,0.00030622078,0.010422675,0.00007412542,0.00022251772,0.000010682766,0.00009121856,0.0000018754198,0.9870438,0.00044864952,0.001065425,0.00023371055],"study_design_scores_gemma":[0.0018657454,0.0003108646,0.025216917,0.00024933415,0.00016057177,0.0009615279,0.000047182126,0.0000018616045,0.9368063,0.00009364865,0.03417539,0.00011062035],"about_ca_topic_score_codex":0.0014469578,"about_ca_topic_score_gemma":0.00017217085,"teacher_disagreement_score":0.050237443,"about_ca_system_score_codex":0.000035974957,"about_ca_system_score_gemma":0.0004493192,"threshold_uncertainty_score":0.9995704},"labels":[],"label_agreement":null},{"id":"W2084393593","doi":"10.1179/acb.2005.050","title":"RECOMMENDATIONS FOR THE USE OF THE 23-VALENT POLYSACCHARIDE PNEUMOCOCCAL VACCINE IN ADULTS: A BELGIAN CONSENSUS REPORT.","year":2005,"lang":"en","type":"review","venue":"Acta Clinica Belgica","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Quest University Canada","funders":"","keywords":"Medicine; Pneumococcal polysaccharide vaccine; Pneumococcal vaccine; Consensus conference; Streptococcus pneumoniae; Pneumococcal infections; Pneumococcal disease; Family medicine; Intensive care medicine; Immunology; Microbiology; Internal medicine; Antibiotics","score_opus":0.20298862500656298,"score_gpt":0.4228224840651861,"score_spread":0.2198338590586231,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084393593","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0021461044,0.8894614,0.000019065541,0.08863755,0.003084576,0.014604691,0.0016422698,0.00017658806,0.00022775361],"genre_scores_gemma":[0.0009723383,0.9936776,0.00029907757,0.0013557614,0.00056425825,0.0007719191,0.0001602048,0.00009408595,0.0021047152],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9949435,0.00045056437,0.0031169322,0.00070669735,0.00030681505,0.00047546785],"domain_scores_gemma":[0.987004,0.00852113,0.0019454538,0.002031509,0.00030791553,0.000189982],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009507554,0.000522875,0.0020655727,0.00026537504,0.00033632078,0.00004363335,0.00047329735,0.0006206301,0.00013522268],"category_scores_gemma":[0.006638355,0.0002720928,0.0017208902,0.0008726087,0.00020149366,0.00008630211,0.00023216961,0.0014233525,0.000016623571],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029741597,0.0022945746,0.0033270598,0.0059913383,0.0017682386,0.00011050547,0.0001888152,0.0000057308457,0.00006856841,0.00016283165,0.06312005,0.9226649],"study_design_scores_gemma":[0.001173786,0.00024245401,0.0040068743,0.011580133,0.0023682169,0.0007970378,0.000025309442,0.000019878973,0.0000012611606,0.000006041181,0.97951347,0.00026551925],"about_ca_topic_score_codex":0.00014329457,"about_ca_topic_score_gemma":0.00062834856,"teacher_disagreement_score":0.92239934,"about_ca_system_score_codex":0.00018974456,"about_ca_system_score_gemma":0.0010856909,"threshold_uncertainty_score":0.9999731},"labels":[],"label_agreement":null},{"id":"W2084705961","doi":"10.1371/journal.pone.0028547","title":"Community-Based Outbreaks in Vulnerable Populations of Invasive Infections Caused by Streptococcus pneumoniae Serotypes 5 and 8 in Calgary, Canada","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Calgary Laboratory Services; Alberta Children's Hospital; University of Calgary; Alberta Health Services","funders":"Children's Hospital Foundation; Alberta Children's Hospital Foundation; Calgary Laboratory Services; GlaxoSmithKline; University of Alberta; Pfizer","keywords":"Multilocus sequence typing; Outbreak; Serotype; Streptococcus pneumoniae; Epidemiology; Genotype; Medicine; Molecular epidemiology; Pneumococcal disease; Typing; Virology; Microbiology; Biology; Internal medicine; Antibiotics; Genetics; Gene","score_opus":0.07831524378617323,"score_gpt":0.25261236996418235,"score_spread":0.17429712617800913,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084705961","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973677,0.000033285756,0.0000070425526,0.000410821,0.000027712382,0.0005399021,0.000055146556,0.000025779978,0.0015326417],"genre_scores_gemma":[0.99929947,0.000012944931,0.00003450688,0.00033504688,0.0000082527185,0.00012399843,0.000054482014,0.00001543213,0.000115875155],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989774,0.00022967902,0.000326476,0.00012749278,0.00015200222,0.00018695084],"domain_scores_gemma":[0.99930036,0.00013970857,0.000083776875,0.00027086018,0.00009233432,0.00011294594],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015944304,0.00012306178,0.00032068434,0.00023960302,0.00015660074,0.0000048013767,0.000054398573,0.00009140601,0.00005452708],"category_scores_gemma":[0.00019929657,0.00012160937,0.000023917206,0.00036313065,0.00007607809,0.000064946275,0.00002737577,0.00058887096,0.0000017516371],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009394615,0.0022855275,0.9043874,0.00016410805,0.00005134475,0.000012188638,0.00041266336,0.000026493834,0.09252083,0.000022706125,0.00007768324,0.000029625808],"study_design_scores_gemma":[0.0014186354,0.00033206784,0.95161337,0.00039228026,0.00011309428,0.000001618504,0.00023237374,0.00018032151,0.04539315,0.00007672633,0.00010116141,0.00014520095],"about_ca_topic_score_codex":0.50085795,"about_ca_topic_score_gemma":0.9335974,"teacher_disagreement_score":0.43273944,"about_ca_system_score_codex":0.00015030037,"about_ca_system_score_gemma":0.0005053308,"threshold_uncertainty_score":0.50246584},"labels":[],"label_agreement":null},{"id":"W2084883112","doi":"10.1086/320181","title":"Worldwide Prevalence of Antimicrobial Resistance in<i>Streptococcus pneumoniae, Haemophilus influenzae,</i>and<i>Moraxella catarrhalis</i>in the SENTRY Antimicrobial Surveillance Program, 1997–1999","year":2001,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":376,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Sciences Centre; Manitoba Health","funders":"","keywords":"Moraxella catarrhalis; Streptococcus pneumoniae; Haemophilus influenzae; Microbiology; Trimethoprim; Clindamycin; Medicine; Moraxella (Branhamella) catarrhalis; Sulfamethoxazole; Antibiotic resistance; Antimicrobial; Penicillin; Antibiotics; Biology","score_opus":0.02200681621373863,"score_gpt":0.33128435827501757,"score_spread":0.30927754206127894,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084883112","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99349296,0.0011509125,0.0000056882855,0.0020615351,0.0004357169,0.0016624343,0.00020839338,0.00016268372,0.00081968756],"genre_scores_gemma":[0.99333733,0.0030873576,0.000011391955,0.002854312,0.00036605063,0.00014136796,0.000042463562,0.000037058166,0.00012265424],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99634963,0.0006436197,0.0013720285,0.0007398023,0.0003004304,0.00059446576],"domain_scores_gemma":[0.9974461,0.0009615393,0.00039115438,0.00076210225,0.0001674435,0.00027161773],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007644247,0.00037776103,0.0008702188,0.0002542895,0.00017606073,0.00006604162,0.0002764589,0.00024761367,0.00002514674],"category_scores_gemma":[0.0010196331,0.00029543284,0.0003663615,0.001080857,0.0009693712,0.00016726412,0.00011467942,0.00073793944,0.000019020556],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016861362,0.0027645498,0.991027,0.0007452501,0.000056321805,0.00039782148,0.000106473155,0.000037276346,0.0012236369,0.000038176,0.0020490417,0.0013858593],"study_design_scores_gemma":[0.0028541714,0.00032306465,0.97770905,0.00068370183,0.00014999804,0.000088952984,0.000021484946,0.000021180063,0.00008137879,0.00009988073,0.017658925,0.00030818838],"about_ca_topic_score_codex":0.00013725867,"about_ca_topic_score_gemma":0.0018704017,"teacher_disagreement_score":0.015609882,"about_ca_system_score_codex":0.00007371108,"about_ca_system_score_gemma":0.0003050646,"threshold_uncertainty_score":0.99994975},"labels":[],"label_agreement":null},{"id":"W2085022407","doi":"10.1128/jcm.01924-07","title":"Evaluation of Melting Curve Analysis for Screening the Most Prevalent Mutations in Topoisomerase Genes from <i>Streptococcus pneumoniae</i>","year":2008,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Health and Long Term Care","funders":"","keywords":"Streptococcus pneumoniae; Melting curve analysis; Levofloxacin; Microbiology; Point mutation; Streptococcaceae; Topoisomerase IV; Polymerase chain reaction; Biology; Gene; Antibacterial agent; Streptococcus; Virology; Mutation; DNA gyrase; Genetics; Antibiotics; Bacteria; Escherichia coli","score_opus":0.131270581351972,"score_gpt":0.41663792436672764,"score_spread":0.28536734301475564,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085022407","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8422444,0.0024479157,0.0009855175,0.15143618,0.0011148778,0.001212089,0.0005027319,0.000008795756,0.00004751203],"genre_scores_gemma":[0.758058,0.003049076,0.0018321238,0.2205,0.014184141,0.00023424481,0.0017905991,0.00012555053,0.00022622562],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9940802,0.0018248688,0.0031959668,0.00032930728,0.00029559186,0.00027406035],"domain_scores_gemma":[0.99023175,0.00448754,0.0030301001,0.00037095835,0.0018062837,0.00007337399],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0044029625,0.0002492867,0.0016737629,0.0005451183,0.000110438355,0.000010673758,0.00025464385,0.00088986394,0.00007520018],"category_scores_gemma":[0.0035494792,0.00015924005,0.0014788694,0.00052370905,0.00032896083,0.000054851807,0.000045371064,0.0020562855,0.00000263433],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003003888,0.00094501843,0.78037655,0.00017731609,0.015888173,0.00021862486,0.00041673923,0.008276006,0.08990025,0.000001098531,0.07305252,0.03044734],"study_design_scores_gemma":[0.014601362,0.0033423128,0.27844572,0.0014182812,0.055792198,0.00084185787,0.0003327848,0.0033840265,0.00271136,0.0003032188,0.6380512,0.0007756445],"about_ca_topic_score_codex":0.000051228177,"about_ca_topic_score_gemma":0.00013092552,"teacher_disagreement_score":0.5649987,"about_ca_system_score_codex":0.00009833336,"about_ca_system_score_gemma":0.00086801365,"threshold_uncertainty_score":0.89336514},"labels":[],"label_agreement":null},{"id":"W2085163910","doi":"10.1016/j.jmb.2009.03.012","title":"Blood Group Antigen Recognition by a Solute-Binding Protein from a Serotype 3 Strain of Streptococcus pneumoniae","year":2009,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research","keywords":"Streptococcus pneumoniae; Fucose; Microbiology; Virulence; Serotype; Operon; Antigen; Pathogen; Biology; Glycan; Streptococcus; Bacteria; Biochemistry; Glycoprotein; Gene; Immunology; Escherichia coli; Genetics","score_opus":0.013318453100252972,"score_gpt":0.2786397991704323,"score_spread":0.2653213460701793,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085163910","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963924,0.00032854363,0.0016806904,0.00093611365,0.0000959109,0.00031237444,0.00009347081,0.000012733558,0.00014774631],"genre_scores_gemma":[0.9988036,0.000057569145,0.0006464791,0.00029977295,0.00011171949,0.0000046952887,0.00004974113,0.0000114104705,0.000014971336],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988455,0.0001561307,0.0005166732,0.00014945123,0.00013345956,0.00019874123],"domain_scores_gemma":[0.99906915,0.000024497635,0.00047474573,0.00013962029,0.00016734606,0.00012466402],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023541026,0.00013372589,0.000394617,0.00019099488,0.000042922482,0.000007241032,0.000091496506,0.00020485421,0.000057029225],"category_scores_gemma":[0.00011999719,0.000107028995,0.0002044583,0.00015745207,0.00006123147,0.000048510698,0.000013642601,0.00033438485,0.000006291295],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006211054,0.00039281588,0.006144723,0.000010728109,0.00023631612,0.00016888828,0.000038275157,8.7339976e-7,0.98417485,0.000027827218,0.000039567916,0.008703021],"study_design_scores_gemma":[0.0034506524,0.008425818,0.018395267,0.00040746923,0.00038377516,0.00041963995,0.00008515101,0.000008016303,0.963847,0.0027539514,0.0016051893,0.0002180664],"about_ca_topic_score_codex":0.000010232393,"about_ca_topic_score_gemma":0.0000028235816,"teacher_disagreement_score":0.02032785,"about_ca_system_score_codex":0.000026035805,"about_ca_system_score_gemma":0.0000987745,"threshold_uncertainty_score":0.43645158},"labels":[],"label_agreement":null},{"id":"W2085205075","doi":"10.1097/01.inf.0000095430.29265.7f","title":"Emergence of fluoroquinolone-resistant Streptococcus pneumoniae in a South African child in a tuberculosis treatment facility","year":2003,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Streptococcus pneumoniae; Pyrazinamide; Pneumonia; Tuberculosis; Pediatrics; Drug resistance; Population; Bronchitis; Regimen; Mycobacterium tuberculosis; Internal medicine; Intensive care medicine; Antibiotics; Microbiology; Environmental health; Pathology","score_opus":0.012445553340402942,"score_gpt":0.25127805248421914,"score_spread":0.23883249914381618,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085205075","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99589366,0.00086552894,0.00002293851,0.00046734285,0.00023651519,0.0006948238,0.00007652743,0.00003262473,0.0017100212],"genre_scores_gemma":[0.99875927,0.0008497133,0.000003474367,0.00008134358,0.00015883909,0.00010369378,0.0000020020675,0.000015023928,0.000026629958],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9977899,0.00040075526,0.00072958635,0.00027782147,0.0003413474,0.0004605865],"domain_scores_gemma":[0.998718,0.00009552236,0.00027227082,0.00040030526,0.000138097,0.00037581104],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045549904,0.00026525973,0.00043800703,0.0005973109,0.00025178792,0.000022326589,0.00010196534,0.000084568805,0.0002681524],"category_scores_gemma":[0.00051373505,0.00017435719,0.0003389269,0.0011302354,0.00009748486,0.000082477396,0.000022591083,0.00052840787,0.00002099273],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000120279925,0.0014110557,0.99502546,0.000062066756,0.00007452142,0.0001668774,0.0013929653,0.00069554854,0.0005715133,0.00003180363,0.000032120806,0.00041579103],"study_design_scores_gemma":[0.0027068031,0.0007928497,0.9937313,0.000047754933,0.0005478405,0.00022725842,0.0010047669,0.00005871552,0.0000787865,0.0003473816,0.00023557585,0.00022095637],"about_ca_topic_score_codex":0.00012334484,"about_ca_topic_score_gemma":0.00024093513,"teacher_disagreement_score":0.0028656027,"about_ca_system_score_codex":0.00028789087,"about_ca_system_score_gemma":0.0006216408,"threshold_uncertainty_score":0.71100795},"labels":[],"label_agreement":null},{"id":"W2085782029","doi":"10.1097/01.inf.0000259955.66171.0c","title":"Immunologic Considerations for the Timing of the Booster Dose of 7-Valent Pneumococcal Conjugate Vaccine in Young Children","year":2007,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dalhousie University; Izaak Walton Killam Health Centre; BC Children's Hospital; University of British Columbia","funders":"Clinical Trial Center, China Medical University Hospital","keywords":"Reactogenicity; Medicine; Booster dose; Pneumococcal conjugate vaccine; Immunogenicity; Booster (rocketry); Vaccination; Adverse effect; Immunization; Serology; Antibody; Haemophilus influenzae; Conjugate vaccine; Pediatrics; Internal medicine; Immunology; Streptococcus pneumoniae; Antibiotics; Biology; Microbiology","score_opus":0.017095729899715542,"score_gpt":0.27767706591811714,"score_spread":0.2605813360184016,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085782029","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950299,0.0007580996,0.00021588661,0.0020243889,0.0006294553,0.0010485208,0.00002479524,0.000017286551,0.00025165797],"genre_scores_gemma":[0.9984793,0.00042243509,0.000007940241,0.00032858833,0.0006749616,0.000027953216,9.0856076e-7,0.000016145892,0.000041734784],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985292,0.00014716877,0.00067284843,0.0001194696,0.00023935564,0.00029195665],"domain_scores_gemma":[0.9979369,0.00091832574,0.0004445316,0.00034043464,0.00025181705,0.00010799381],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001064315,0.00015436974,0.00025628123,0.00020689199,0.0006064733,0.000024175008,0.00014244238,0.00006989499,0.00006704581],"category_scores_gemma":[0.00083704153,0.0000710028,0.0003504377,0.0003697955,0.00012691993,0.00006781647,0.00006500288,0.00054543524,0.0000030752426],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017769152,0.0003363306,0.9945438,0.000034860146,0.00013735254,0.000007771361,0.00032679713,0.00071105297,0.003253286,0.000092324146,0.0002167549,0.00016196644],"study_design_scores_gemma":[0.0021773498,0.00020477858,0.99411964,0.00003039134,0.0009286263,0.0011181324,0.0000947703,0.00012549078,0.0002580447,0.0008285461,0.00003292257,0.000081330094],"about_ca_topic_score_codex":0.000038878527,"about_ca_topic_score_gemma":0.00008375617,"teacher_disagreement_score":0.003449423,"about_ca_system_score_codex":0.000089098496,"about_ca_system_score_gemma":0.00034601602,"threshold_uncertainty_score":0.46645638},"labels":[],"label_agreement":null},{"id":"W2086469210","doi":"10.2147/ijgm.s15867","title":"Infection with Mycoplasma pneumoniae is not related to asthma control, asthma severity, and location of airway obstruction","year":2010,"lang":"en","type":"article","venue":"International Journal of General Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Western Hospital; University Health Network","funders":"","keywords":"Medicine; Mycoplasma pneumoniae; Asthma; Airway; Airway obstruction; Immunology; Mycoplasma; Intensive care medicine; Pneumonia; Internal medicine; Microbiology; Surgery","score_opus":0.00712973140734569,"score_gpt":0.276049585894657,"score_spread":0.2689198544873113,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086469210","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97452426,0.000037489695,0.0015307267,0.021062382,0.0022746036,0.0001721816,0.0000066250186,0.000016102304,0.00037560292],"genre_scores_gemma":[0.99671835,0.000074411495,0.00045037316,0.0015215299,0.00089809636,0.0000043729756,0.0000056220797,0.000017219576,0.00031003877],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99835104,0.000046219226,0.0006418772,0.00016182846,0.0006745952,0.00012444693],"domain_scores_gemma":[0.99668366,0.000059685153,0.00048328983,0.0001285085,0.0024244364,0.00022043922],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039661996,0.00015371478,0.00035858285,0.00053820724,0.00005637173,0.000013662606,0.00009182184,0.00012458368,0.00013024993],"category_scores_gemma":[0.0003652577,0.00010710443,0.000055532735,0.00037137305,0.00016634366,0.00020344251,0.000021143547,0.00046245713,0.0000063150064],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00084400165,0.00014101746,0.10344523,0.00003879062,0.00039768213,0.000062598,0.0004932629,0.000385442,0.87674403,0.000462234,0.00058241445,0.01640329],"study_design_scores_gemma":[0.009839326,0.005459227,0.8891539,0.0009177174,0.00025265611,0.025072424,0.00010401497,0.0016838477,0.041799504,0.00025663903,0.025211971,0.0002487903],"about_ca_topic_score_codex":0.00013742979,"about_ca_topic_score_gemma":0.00008226197,"teacher_disagreement_score":0.83494455,"about_ca_system_score_codex":0.00007705863,"about_ca_system_score_gemma":0.00016473146,"threshold_uncertainty_score":0.4367592},"labels":[],"label_agreement":null},{"id":"W2086601754","doi":"10.1016/j.ijantimicag.2007.12.003","title":"Role of gemifloxacin in the management of community-acquired lower respiratory tract infections","year":2008,"lang":"en","type":"review","venue":"International Journal of Antimicrobial Agents","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal University Hospital","funders":"","keywords":"Gemifloxacin; Streptococcus pneumoniae; Respiratory tract infections; Antimicrobial; Medicine; Respiratory tract; Intensive care medicine; Pharmacology; Respiratory system; Microbiology; Internal medicine; Antibiotics; Biology","score_opus":0.060811394681331,"score_gpt":0.36718834962535535,"score_spread":0.30637695494402434,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086601754","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.40484303,0.581684,0.000059193568,0.0005116351,0.0042142575,0.0018042134,0.00030893105,0.000024183835,0.0065505337],"genre_scores_gemma":[0.07180232,0.92743194,0.0000359309,0.00039186628,0.00024337837,0.0000067471124,0.000022621176,0.000027182954,0.000038007995],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99727595,0.00043762795,0.0015066285,0.00009515943,0.00053974945,0.00014489931],"domain_scores_gemma":[0.99767965,0.00014052498,0.0014030554,0.00029759546,0.00042404063,0.00005513718],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000527533,0.00023851322,0.0010056979,0.0008468652,0.00007501385,0.000015178162,0.00067321345,0.00018338328,0.0000638289],"category_scores_gemma":[0.00004487712,0.00016267448,0.00092502317,0.00038470473,0.00016052714,0.00011543327,0.00010288574,0.00076286047,0.00001103853],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005699849,0.047310587,0.008450497,0.015778352,0.01758932,0.0038980132,0.0043249014,0.00030436672,0.012215602,0.0003778156,0.020784257,0.8683963],"study_design_scores_gemma":[0.0012851822,0.0005071521,0.007980466,0.01519969,0.0008038161,0.0026558344,0.0001428881,6.4535914e-7,0.00009226866,0.00001532027,0.9711691,0.00014762382],"about_ca_topic_score_codex":0.000029020473,"about_ca_topic_score_gemma":0.0000056806343,"teacher_disagreement_score":0.95038486,"about_ca_system_score_codex":0.00017275488,"about_ca_system_score_gemma":0.0002795799,"threshold_uncertainty_score":0.6633673},"labels":[],"label_agreement":null},{"id":"W2086611034","doi":"10.1128/iai.02008-06","title":"Differential Contribution of Bacterial <i>N</i> -Formyl-Methionyl-Leucyl- Phenylalanine and Host-Derived CXC Chemokines to Neutrophil Infiltration into Pulmonary Alveoli during Murine Pneumococcal Pneumonia","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Biology; Microbiology; Streptococcus pneumoniae; Pneumonia; Chemokine; Infiltration (HVAC); Pneumococcal pneumonia; Immunology; Inflammation; Antibiotics; Medicine; Internal medicine","score_opus":0.007924061944952364,"score_gpt":0.2592591295114018,"score_spread":0.2513350675664494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086611034","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99746376,0.000035363337,0.00049160415,0.000415265,0.00060674926,0.0005719693,0.000012001062,0.00012393264,0.00027933953],"genre_scores_gemma":[0.99899656,0.0002492628,0.000022944518,0.00012718757,0.0004248938,0.000026209635,0.00008558023,0.000022967552,0.00004438636],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985915,0.000101617436,0.00054755626,0.0002695397,0.00018876894,0.0003010347],"domain_scores_gemma":[0.9989536,0.000075476404,0.00018800917,0.0002497568,0.0002680172,0.00026514413],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002907021,0.00026715954,0.00043592087,0.0003435257,0.000443356,0.00004123651,0.000045202964,0.00023081314,0.00009465947],"category_scores_gemma":[0.0001805426,0.0002416476,0.00009312782,0.00034757564,0.00017840085,0.000273985,0.00011450052,0.00040985658,0.000005076015],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006146735,0.0002941865,0.07759994,0.00012626071,0.00006363532,0.000009738536,0.00030269925,0.0000019760782,0.9186252,0.000037763253,0.0000030215313,0.0023209064],"study_design_scores_gemma":[0.0013723978,0.0005627359,0.6366725,0.000066675646,0.00007607851,0.0003236754,0.000043416698,0.000021708665,0.35982585,0.00001978491,0.0008655485,0.000149617],"about_ca_topic_score_codex":0.0005007759,"about_ca_topic_score_gemma":0.00018496148,"teacher_disagreement_score":0.55907255,"about_ca_system_score_codex":0.00009703009,"about_ca_system_score_gemma":0.000047753547,"threshold_uncertainty_score":0.98541033},"labels":[],"label_agreement":null},{"id":"W2086775808","doi":"10.1097/00006454-200005000-00007","title":"Risk factors for mortality among children hospitalized because of acute respiratory infections in Bangui, Central African Republic","year":2000,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":70,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Medical Research Council; Canadian Bureau for International Education","keywords":"Medicine; Odds ratio; Pneumonia; Pediatrics; Confidence interval; Population; Risk factor; Severe Acute Malnutrition; Respiratory infection; Malnutrition; Internal medicine; Respiratory system; Environmental health","score_opus":0.010481226374308945,"score_gpt":0.26921740605199246,"score_spread":0.25873617967768353,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086775808","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99676275,0.00015544928,0.00007481325,0.00014226194,0.00047233273,0.0012258306,0.00040347976,0.00011847067,0.0006446343],"genre_scores_gemma":[0.99747616,0.00090163754,0.0000040946265,0.00015242885,0.0011999634,0.00009679667,0.000020948022,0.000048456175,0.00009951546],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9973632,0.0003677231,0.0008726023,0.00032104793,0.00042796065,0.0006474528],"domain_scores_gemma":[0.9977239,0.00024477803,0.00054868043,0.00054099486,0.0002488545,0.0006928249],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000659037,0.0003271396,0.0005123033,0.00061875494,0.0007110533,0.000074954056,0.00018916058,0.0001532648,0.0005426915],"category_scores_gemma":[0.00068954617,0.00022825494,0.00071865175,0.0011144606,0.00022088732,0.00030170102,0.000034285928,0.00084698905,0.000007991034],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000115460185,0.0009831777,0.99607724,0.000027372209,0.00056709227,0.000020563142,0.0003655495,0.0008082961,0.000014476861,0.000012902618,0.00069277314,0.00031510647],"study_design_scores_gemma":[0.0028505235,0.00059254485,0.99210167,0.00001797308,0.0031992153,0.00010244305,0.00003659898,0.00006020348,0.000008745063,0.0003778476,0.0004121593,0.00024008368],"about_ca_topic_score_codex":0.0004301606,"about_ca_topic_score_gemma":0.00014374603,"teacher_disagreement_score":0.0039755674,"about_ca_system_score_codex":0.00028088666,"about_ca_system_score_gemma":0.0006946299,"threshold_uncertainty_score":0.9307966},"labels":[],"label_agreement":null},{"id":"W2086786829","doi":"10.1097/pec.0b013e31829e7d6a","title":"The Role of Physical Examination in Establishing the Diagnosis of Pneumonia","year":2013,"lang":"en","type":"article","venue":"Pediatric Emergency Care","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Hospital for Sick Children; SickKids Foundation","funders":"","keywords":"Medicine; Pneumonia; Chest radiograph; Physical examination; Auscultation; Radiography; Emergency department; Community-acquired pneumonia; Medical history; Ambulatory; Physical therapy; Radiology; Pediatrics; Intensive care medicine; Emergency medicine; Surgery; Internal medicine","score_opus":0.007506365290704814,"score_gpt":0.2541100141968677,"score_spread":0.24660364890616288,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086786829","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99332494,0.0028175488,0.0000015880404,0.000308149,0.00022040571,0.00035271322,0.000006318973,0.00001199689,0.002956342],"genre_scores_gemma":[0.99782,0.0016132549,0.0000022400234,0.000010330381,0.00032686806,0.00017768644,0.0000035707587,0.000009568248,0.00003648446],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99913085,0.00008296659,0.00029237155,0.0001106589,0.00023628844,0.00014689351],"domain_scores_gemma":[0.9990902,0.000242274,0.00013084267,0.00023716314,0.00026192292,0.000037606453],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001374408,0.00008236801,0.0001469174,0.00009601583,0.00009854634,0.0000056490308,0.00012359057,0.000046178342,0.000051771727],"category_scores_gemma":[0.00033758197,0.000045584107,0.00010731742,0.00059986784,0.00003768128,0.00009863667,0.00003663379,0.0001607233,0.000010531674],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00000137703,0.00009218858,0.9751294,0.000069167916,0.000009316982,4.257938e-7,0.0029489794,0.000028204971,0.005229784,0.00014846303,0.00019057671,0.016152116],"study_design_scores_gemma":[0.00014086369,0.00012152366,0.99191684,0.000008700795,0.00009378624,9.073713e-7,0.0038606825,0.00017090404,0.0017222062,0.0002260409,0.0016812034,0.000056352957],"about_ca_topic_score_codex":0.0003932839,"about_ca_topic_score_gemma":0.0001053626,"teacher_disagreement_score":0.016787428,"about_ca_system_score_codex":0.000029035236,"about_ca_system_score_gemma":0.000051796447,"threshold_uncertainty_score":0.18588659},"labels":[],"label_agreement":null},{"id":"W2088000958","doi":"10.1016/j.rcc.2004.10.004","title":"Management of Community-acquired Pneumonia in the Emergency Room","year":2005,"lang":"en","type":"article","venue":"Respiratory Care Clinics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Chest radiograph; Pneumonia; Community-acquired pneumonia; Intensive care medicine; Emergency department; Physical examination; Medical history; Context (archaeology); Emergency medicine; Population; Ambulatory care; Diabetes mellitus; Health care; Physical therapy; Radiography; Internal medicine; Surgery; Nursing","score_opus":0.05156457836418976,"score_gpt":0.3672101567547824,"score_spread":0.31564557839059265,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2088000958","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98289055,0.001275329,0.000017481205,0.0008262475,0.0003175211,0.0005022234,0.000013503021,0.000050615326,0.014106516],"genre_scores_gemma":[0.99626875,0.00027038666,0.000057403056,0.0030065065,0.00018291845,0.000055955228,0.000009988658,0.000025169462,0.0001229416],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.99800056,0.00047266166,0.00077975943,0.0001600744,0.00033021797,0.0002567462],"domain_scores_gemma":[0.9984878,0.000121033474,0.00018119255,0.0009630738,0.00016096483,0.00008599011],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008574321,0.00017771435,0.00033064382,0.000161729,0.00020519385,0.00000812821,0.0003222725,0.00015143136,0.00008002739],"category_scores_gemma":[0.00006468949,0.00013266127,0.00022575572,0.0005124174,0.00007402969,0.00007338319,0.00008936816,0.00048578824,0.00006654441],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031518494,0.0047480552,0.59344894,0.0029421805,0.0006468626,0.00047710247,0.025866743,0.001011197,0.028812505,0.0039108284,0.00554337,0.33227706],"study_design_scores_gemma":[0.0015697707,0.0007648106,0.48604774,0.00017957235,0.00018564073,0.000016003674,0.011843561,0.000018285988,0.0005407738,0.00008061437,0.49854606,0.00020714194],"about_ca_topic_score_codex":0.000009675992,"about_ca_topic_score_gemma":0.000117255324,"teacher_disagreement_score":0.4930027,"about_ca_system_score_codex":0.00010266561,"about_ca_system_score_gemma":0.00009144738,"threshold_uncertainty_score":0.540977},"labels":[],"label_agreement":null},{"id":"W2088176649","doi":"10.1139/w07-117","title":"Identification of <i>Streptococcus pneumoniae</i> genes specifically induced in mouse lung tissues","year":2008,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Natural Science Foundation of Chongqing; Chongqing University; National Natural Science Foundation of China","keywords":"Streptococcus pneumoniae; Gene; Biology; Mutant; In vivo; Microbiology; Plasmid; Phenotype; Reporter gene; Gene expression; Genetics","score_opus":0.02163307106918151,"score_gpt":0.2570319146105295,"score_spread":0.235398843541348,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2088176649","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99785846,0.0006587715,0.000017826338,0.0008114668,0.0003294657,0.00014609318,0.000028401035,0.000003935787,0.00014558794],"genre_scores_gemma":[0.9992353,0.00014528714,0.000016461052,0.00018382116,0.00012038609,0.000002299411,0.0000059244285,0.000011124436,0.0002794217],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99890083,0.00007705714,0.00065449945,0.00011305844,0.00003780512,0.00021673081],"domain_scores_gemma":[0.9990334,0.000030289237,0.00029398245,0.00015634061,0.00023248758,0.0002534829],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001835005,0.00009690545,0.00033501047,0.0005187778,0.00006419504,0.000004455147,0.00011715103,0.00015913113,0.00007551822],"category_scores_gemma":[0.00008834133,0.00008501712,0.00009932908,0.00019706649,0.00018083052,0.000050958584,0.0000058356927,0.00027194977,0.000014381923],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008500859,0.000032357108,0.17956705,0.000013240189,0.00003087957,0.00027642606,0.00024223737,0.000010840015,0.8189589,0.000015316955,0.00054516667,0.00029908723],"study_design_scores_gemma":[0.0014273871,0.00053366873,0.18588533,0.000104422084,0.00005845954,0.006681632,0.00021198914,0.000005551159,0.7643625,0.000016087084,0.040527705,0.00018528887],"about_ca_topic_score_codex":0.0004277953,"about_ca_topic_score_gemma":0.005161795,"teacher_disagreement_score":0.05459641,"about_ca_system_score_codex":0.00014488009,"about_ca_system_score_gemma":0.0010855269,"threshold_uncertainty_score":0.34668976},"labels":[],"label_agreement":null},{"id":"W2088238988","doi":"10.1016/j.vaccine.2012.11.005","title":"Safety and immunogenicity of the pneumococcal pneumolysin derivative PlyD1 in a single-antigen protein vaccine candidate in adults","year":2012,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":97,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"Sanofi Pasteur","keywords":"Pneumolysin; Immunogenicity; Medicine; Adverse effect; Adjuvant; Streptococcus pneumoniae; Placebo; Discontinuation; Reactogenicity; Randomized controlled trial; Immunology; Vaccination; Antigen; Internal medicine; Microbiology; Biology; Pathology","score_opus":0.00928545541704959,"score_gpt":0.24007048282672208,"score_spread":0.2307850274096725,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2088238988","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961749,0.00050997303,0.00001351027,0.0017815382,0.0001017294,0.0011063031,0.000015630434,0.000023016482,0.00027341035],"genre_scores_gemma":[0.99949026,0.00008406208,0.000027060156,0.00015402224,0.000078557576,0.000045972938,0.0000074136938,0.00002252312,0.0000901297],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984264,0.00016279437,0.0006014076,0.00023747493,0.00016655341,0.00040538204],"domain_scores_gemma":[0.99918735,0.00006396379,0.00018081872,0.00037724158,0.00007097819,0.00011962847],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037595586,0.00021357309,0.0004968599,0.00023748456,0.00007841344,0.0000061657215,0.00011080987,0.00012833558,0.000054951244],"category_scores_gemma":[0.00021936052,0.00014219865,0.000088405555,0.0008110162,0.00002411882,0.00014959958,0.00013026303,0.00037074156,0.0000055845067],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048384207,0.00035803913,0.5415559,0.000060532435,0.000029207087,0.000005977807,0.0006291014,0.0000048840657,0.4560474,0.000030504463,0.0000036302893,0.00079104333],"study_design_scores_gemma":[0.0042015333,0.00024465047,0.927261,0.0005041339,0.000029361145,0.00007706145,0.00014849287,0.000056937984,0.06600569,0.000020253347,0.0013128682,0.0001380476],"about_ca_topic_score_codex":0.00067156414,"about_ca_topic_score_gemma":0.0013086079,"teacher_disagreement_score":0.39004168,"about_ca_system_score_codex":0.00013603039,"about_ca_system_score_gemma":0.00008400592,"threshold_uncertainty_score":0.5798693},"labels":[],"label_agreement":null},{"id":"W2088318447","doi":"10.1016/j.vaccine.2008.07.082","title":"Inhaled delivery of 23-valent pneumococcal polysaccharide vaccine does not result in enhanced pulmonary mucosal immunoglobulin responses","year":2008,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Wellcome Trust","keywords":"Medicine; Pneumococcal polysaccharide vaccine; Immunoglobulin A; Pneumococcal vaccine; Immunology; Antibody; Pneumococcal infections; Immunoglobulin G; Pneumococcal disease; Streptococcus pneumoniae; Microbiology; Biology; Antibiotics","score_opus":0.017345775409471242,"score_gpt":0.26655711940383364,"score_spread":0.2492113439943624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2088318447","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99533397,0.0006704007,0.000021687045,0.002271758,0.0003898677,0.00065185106,0.000058925907,0.00014257828,0.0004589329],"genre_scores_gemma":[0.9959156,0.0014567155,0.00008155413,0.0005030651,0.00028377018,0.000070805036,0.000027479608,0.00004890555,0.0016121238],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99719137,0.00019507801,0.0011643489,0.00053397403,0.00039614638,0.00051906577],"domain_scores_gemma":[0.99828285,0.00024435992,0.00027927427,0.0007063335,0.00026695896,0.00022023491],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003867816,0.00036659543,0.00086296006,0.00072337204,0.00016157495,0.000007554373,0.00021405182,0.00024883435,0.00018444151],"category_scores_gemma":[0.00043039693,0.00026915068,0.00025341686,0.00079207355,0.000038395763,0.00017684433,0.00013408715,0.0005420425,0.00009598274],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0044288486,0.0008242758,0.09184933,0.00010887782,0.00008593304,0.0011771062,0.00022018257,0.000023438815,0.9001346,0.000014937073,0.00014297274,0.0009894955],"study_design_scores_gemma":[0.0038604937,0.0005473016,0.63404745,0.00023252412,0.0000765216,0.00097592256,0.000087905195,0.000070388756,0.35907948,0.000015517184,0.0007719065,0.00023462012],"about_ca_topic_score_codex":0.00029906695,"about_ca_topic_score_gemma":0.00012325436,"teacher_disagreement_score":0.5421981,"about_ca_system_score_codex":0.00017682574,"about_ca_system_score_gemma":0.0003559905,"threshold_uncertainty_score":0.9999761},"labels":[],"label_agreement":null},{"id":"W2089899802","doi":"10.1097/mjt.0b013e3182459c28","title":"IV Penicillin G Is as Effective as IV Cefuroxime in Treating Community-Acquired Pneumonia in Children","year":2012,"lang":"en","type":"article","venue":"American Journal of Therapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; SickKids Foundation; Hospital for Sick Children","funders":"","keywords":"Cefuroxime; Medicine; Penicillin; Pneumonia; Antibiotics; Community-acquired pneumonia; Internal medicine; Broad spectrum; Pediatrics; Microbiology","score_opus":0.016962181029293016,"score_gpt":0.318478136318805,"score_spread":0.30151595528951197,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2089899802","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99671,0.0005160821,0.000020778754,0.001312678,0.00012812254,0.00029122987,0.0000034559919,0.00001584776,0.0010017778],"genre_scores_gemma":[0.99434584,0.00027846228,0.00012866818,0.004959835,0.00019353266,0.000008254131,0.0000018206038,0.00003870146,0.000044898574],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978652,0.0007526933,0.0005835236,0.00010212987,0.00028304578,0.00041338833],"domain_scores_gemma":[0.99851424,0.00036889137,0.0005023677,0.000294244,0.000108954024,0.00021133466],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00081454235,0.00022880867,0.0006642824,0.00043046146,0.00012806039,0.000018801346,0.00019256717,0.00008145921,0.000046003643],"category_scores_gemma":[0.00009377225,0.00017921554,0.00020797474,0.0006689229,0.0002564839,0.0001805841,0.000041726154,0.0009352358,0.00003786842],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020462871,0.00079700374,0.9134488,0.00000934306,0.00030861908,0.000023256904,0.0063227145,0.000032788652,0.042032417,0.000010458633,0.0000055510686,0.03680442],"study_design_scores_gemma":[0.002255305,0.003659362,0.9826571,0.00021735449,0.00025271854,0.0018148603,0.002913658,0.000042129348,0.0038024534,0.00009238372,0.002072668,0.00022001188],"about_ca_topic_score_codex":0.0006173228,"about_ca_topic_score_gemma":0.000025875204,"teacher_disagreement_score":0.069208294,"about_ca_system_score_codex":0.00026710433,"about_ca_system_score_gemma":0.00014051324,"threshold_uncertainty_score":0.73081976},"labels":[],"label_agreement":null},{"id":"W2091789527","doi":"10.1016/j.vaccine.2005.11.021","title":"Assessment of the compatibility of co-administered 7-valent pneumococcal conjugate, DTaP.IPV/PRP-T Hib and hepatitis B vaccines in infants 2–7 months of age","year":2005,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; Izaak Walton Killam Health Centre; British Columbia Children's Hospital","funders":"Clinical Trial Center, China Medical University Hospital","keywords":"Medicine; Pneumococcal conjugate vaccine; Dosing; Hib vaccine; Hepatitis B; Pediatrics; Conjugate vaccine; Hepatitis B vaccine; Immunology; Antibody; Internal medicine; Streptococcus pneumoniae; Immunization; HBsAg; Hepatitis B virus; Biology; Microbiology; Antibiotics","score_opus":0.01894138379561672,"score_gpt":0.32170880889947795,"score_spread":0.30276742510386123,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2091789527","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99685365,0.00013438884,0.0000080501295,0.00078811456,0.000108959655,0.00072600355,0.00007494243,0.000014811737,0.0012910865],"genre_scores_gemma":[0.99945235,0.00016378623,0.00009082149,0.00012849821,0.00004773114,0.00001990078,0.000010387424,0.000013391135,0.00007314813],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99835753,0.00012613225,0.00086838665,0.0002300184,0.00023862824,0.0001793162],"domain_scores_gemma":[0.9987736,0.00014073736,0.00034568924,0.0005021418,0.00014632003,0.000091548245],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030965556,0.00017217488,0.0006881718,0.00015794218,0.000040436826,0.0000041625844,0.00011303327,0.00009852697,0.00010472943],"category_scores_gemma":[0.00011589615,0.00011690975,0.000117648495,0.00028105604,0.00005808,0.00006961126,0.000082214414,0.00019362349,9.684517e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000071496506,0.0006049378,0.8444109,0.00027286515,0.000049758055,0.0000057347397,0.0001872873,0.000040657942,0.15342884,0.00005419775,0.00007757059,0.0007957767],"study_design_scores_gemma":[0.00314429,0.0005783819,0.96532065,0.00025974147,0.00008067094,0.000022382932,0.0000520717,0.0005651365,0.028940706,0.000022909026,0.00092087616,0.000092209986],"about_ca_topic_score_codex":0.00037316894,"about_ca_topic_score_gemma":0.0017701292,"teacher_disagreement_score":0.12448814,"about_ca_system_score_codex":0.00006217953,"about_ca_system_score_gemma":0.00013294216,"threshold_uncertainty_score":0.47674415},"labels":[],"label_agreement":null},{"id":"W2091801775","doi":"10.1378/chest.9503","title":"Outcomes of Serotype 5 Invasive Pneumococcal Disease (IPD)","year":2010,"lang":"en","type":"article","venue":"CHEST Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Serotype; Medicine; Pneumococcal disease; Incidence (geometry); Outbreak; Virology; Pneumococcal vaccine; Pneumococcal infections; Streptococcus pneumoniae; Microbiology; Antibiotics; Biology","score_opus":0.017365216282019154,"score_gpt":0.289331457030821,"score_spread":0.2719662407488019,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2091801775","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99431807,0.000026283793,0.000029490655,0.0031170542,0.000754127,0.00009963332,0.000004517995,0.000020021645,0.0016308194],"genre_scores_gemma":[0.99851906,0.000029599536,0.00009656768,0.0004638479,0.00039404022,0.0000040009713,0.0000016385641,0.000013296534,0.00047792602],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993104,0.000021060483,0.00023967531,0.00008936598,0.00018027316,0.00015922861],"domain_scores_gemma":[0.99901205,0.00006329558,0.00012021655,0.00019669002,0.00016083385,0.00044693175],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001335504,0.00009846714,0.00021565089,0.0001093502,0.00011409357,0.00001597615,0.00007984866,0.00006993197,0.00038836015],"category_scores_gemma":[0.0004930259,0.00006770859,0.00017420342,0.000098939265,0.00011306068,0.00008004078,0.000022104792,0.00062187196,0.00006420591],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021280992,0.00014433601,0.6815718,0.00004329662,0.00004863543,0.00010939486,0.000065194254,0.0000014217931,0.31738347,0.00007645107,0.0001547359,0.00037998566],"study_design_scores_gemma":[0.00066586584,0.00011103325,0.9793722,0.000038504695,0.00010994609,0.00046591062,0.00004431897,0.000004520859,0.006102542,0.00023857536,0.012776035,0.00007057008],"about_ca_topic_score_codex":0.0000016969432,"about_ca_topic_score_gemma":0.000010364364,"teacher_disagreement_score":0.3112809,"about_ca_system_score_codex":0.0000182135,"about_ca_system_score_gemma":0.00037628447,"threshold_uncertainty_score":0.4252271},"labels":[],"label_agreement":null},{"id":"W2092745974","doi":"10.1016/j.vaccine.2010.06.013","title":"A steady-state, population-based model to estimate the direct and indirect effects of pneumococcal vaccines","year":2010,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; GlaxoSmithKline (Canada)","funders":"GlaxoSmithKline","keywords":"Vaccination; Medicine; Haemophilus influenzae; Pneumococcal conjugate vaccine; Population; Conjugate vaccine; Pneumococcal infections; Herd immunity; Immunization; Pediatrics; Streptococcus pneumoniae; Immunology; Environmental health; Biology; Microbiology; Antibiotics","score_opus":0.009618088172579238,"score_gpt":0.294304497622343,"score_spread":0.28468640944976376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092745974","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967293,0.00004269628,0.00021550033,0.0016797511,0.00022201276,0.0006998108,0.000008951453,0.00009620125,0.0003057554],"genre_scores_gemma":[0.99884754,0.000004673812,0.00024695817,0.00047427398,0.0000753555,0.0000719424,0.000008213729,0.000026326987,0.00024472736],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991461,0.00003660148,0.00025278665,0.00022178405,0.00014095032,0.00020175999],"domain_scores_gemma":[0.99903303,0.0002721614,0.00008041596,0.00035211357,0.00009634931,0.00016594524],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001680224,0.00016977818,0.00034310663,0.00019153264,0.00013241592,0.000015291273,0.000074761585,0.00007559847,0.000015702015],"category_scores_gemma":[0.000352791,0.00010326982,0.000070475726,0.000326697,0.000008868199,0.00004827398,0.0000352099,0.00022199526,0.00000813903],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008272998,0.00013483028,0.38905546,0.0001828523,0.00004546734,0.000009119381,0.00013951378,0.0026241348,0.60557294,0.000037325983,0.00012975482,0.0019859008],"study_design_scores_gemma":[0.001366411,0.00032830425,0.9441269,0.000097344855,0.00013744712,0.000029445382,0.0000041367657,0.016817808,0.036318794,0.0001016458,0.0005360822,0.00013566877],"about_ca_topic_score_codex":0.00007387793,"about_ca_topic_score_gemma":0.0004860421,"teacher_disagreement_score":0.5692541,"about_ca_system_score_codex":0.000014801446,"about_ca_system_score_gemma":0.000069489375,"threshold_uncertainty_score":0.4211221},"labels":[],"label_agreement":null},{"id":"W2092894652","doi":"10.1007/s10719-011-9332-7","title":"Investigating the potential of conserved inner core oligosaccharide regions of Moraxella catarrhalis lipopolysaccharide as vaccine antigens: accessibility and functional activity of monoclonal antibodies and glycoconjugate derived sera","year":2011,"lang":"en","type":"article","venue":"Glycoconjugate Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"University at Buffalo; Ireland Canada University Foundation","keywords":"Moraxella catarrhalis; Monoclonal antibody; Epitope; Glycoconjugate; Mutant; Microbiology; Biology; Antigen; Lipopolysaccharide; Lipid A; Serotype; Antibody; Virology; Haemophilus influenzae; Immunology; Biochemistry; Gene; Antibiotics","score_opus":0.052261659067206145,"score_gpt":0.28277000603643654,"score_spread":0.2305083469692304,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092894652","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973902,0.0004743056,0.00021607292,0.0009772661,0.00025110898,0.00044082932,0.00009238511,0.000022182145,0.00013564492],"genre_scores_gemma":[0.99817497,0.00090028637,0.00041107714,0.00029969518,0.00014379526,0.0000097977545,0.000009440147,0.0000244026,0.00002652842],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99774486,0.00020707345,0.000992453,0.00034475914,0.00038429938,0.0003265821],"domain_scores_gemma":[0.99732167,0.0002029721,0.0011270719,0.00038965544,0.00065403845,0.0003046038],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007570755,0.00031127446,0.00078602444,0.0002486258,0.00044195438,0.000032610948,0.00015758853,0.00017888947,0.00018747438],"category_scores_gemma":[0.00041919132,0.00021453065,0.00020539241,0.00022992029,0.0010025313,0.00038254948,0.00017896667,0.0006260531,0.0000013550941],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005154786,0.00017768556,0.23767623,0.00018712194,0.00037442808,0.00003508968,0.0007319869,0.00001235164,0.75945926,0.00026990252,0.00007654609,0.00048392598],"study_design_scores_gemma":[0.0019608433,0.00050563586,0.6188093,0.00029643023,0.00043691113,0.0022245992,0.0006393431,0.00033020705,0.37209105,0.0025011322,0.000031250464,0.00017328095],"about_ca_topic_score_codex":0.0012938386,"about_ca_topic_score_gemma":0.00009289187,"teacher_disagreement_score":0.38736817,"about_ca_system_score_codex":0.00002918751,"about_ca_system_score_gemma":0.00048676867,"threshold_uncertainty_score":0.8748306},"labels":[],"label_agreement":null},{"id":"W2093360791","doi":"10.1016/j.vaccine.2012.10.076","title":"Safety and immunogenicity of pneumococcal protein vaccine candidates: Monovalent choline-binding protein A (PcpA) vaccine and bivalent PcpA–pneumococcal histidine triad protein D vaccine","year":2012,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":78,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"Sanofi Pasteur","keywords":"Immunogenicity; Medicine; Streptococcus pneumoniae; Immunology; Discontinuation; Adverse effect; Pneumococcal vaccine; Pneumococcal infections; Antibody; Internal medicine; Microbiology; Biology","score_opus":0.016329144799948066,"score_gpt":0.26705016494721323,"score_spread":0.25072102014726516,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2093360791","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9814762,0.003306909,0.00024293868,0.0053350525,0.0003274415,0.008547285,0.0002004695,0.0003441727,0.00021952314],"genre_scores_gemma":[0.9936724,0.0006278176,0.0005252436,0.00013106488,0.000992022,0.0009129519,0.00016248053,0.00020646007,0.0027695806],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9932607,0.00040283313,0.002582886,0.0013030369,0.0007794803,0.0016711091],"domain_scores_gemma":[0.99565816,0.00015882746,0.0010597007,0.0013578597,0.0005131436,0.0012523147],"candidate_categories":["metaepi_narrow"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.0018456989,0.0012760385,0.0024374598,0.0010640192,0.0006040283,0.00007233831,0.00037698785,0.00060754607,0.0006799564],"category_scores_gemma":[0.00077128236,0.0010303817,0.00042180665,0.0013967112,0.000056365865,0.0006499261,0.0005723719,0.0013327651,0.000058318732],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0049945395,0.0016440034,0.07129589,0.0012957513,0.0005699502,0.00005858521,0.0002495887,0.0000056752806,0.91585857,0.00023453764,0.00012192323,0.0036709683],"study_design_scores_gemma":[0.042455714,0.005409041,0.5089582,0.002905829,0.0014184638,0.001560626,0.0002466299,0.0006322233,0.39068446,0.000092579445,0.043653723,0.0019825075],"about_ca_topic_score_codex":0.00034092885,"about_ca_topic_score_gemma":0.0001272112,"teacher_disagreement_score":0.52517414,"about_ca_system_score_codex":0.0004953997,"about_ca_system_score_gemma":0.00030479516,"threshold_uncertainty_score":0.99999917},"labels":[],"label_agreement":null},{"id":"W2093484926","doi":"10.1073/pnas.1202641109","title":"CCAAT/enhancer-binding protein δ facilitates bacterial dissemination during pneumococcal pneumonia in a platelet-activating factor receptor-dependent manner","year":2012,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Streptococcus pneumoniae; Lipoteichoic acid; Platelet-activating factor receptor; Biology; Microbiology; Bacterial pneumonia; Proinflammatory cytokine; Receptor; Immunology; Pneumonia; Streptococcus gordonii; Pneumococcal pneumonia; Staphylococcus aureus; Bacteria; Medicine; Streptococcaceae; Inflammation; Antibiotics; Internal medicine; Biochemistry","score_opus":0.03471262911043706,"score_gpt":0.3183086334379826,"score_spread":0.28359600432754556,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2093484926","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972905,0.000022376871,1.7071673e-7,0.0012201434,0.000065387314,0.00050224963,0.00002456841,0.000022715381,0.0008519043],"genre_scores_gemma":[0.9992882,0.0000085446945,0.00014211134,0.0000049941636,0.00018086874,0.00006236077,5.328771e-7,0.000008274025,0.00030410662],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980285,0.000014633827,0.0004796845,0.000247751,0.000917273,0.00031212674],"domain_scores_gemma":[0.99923223,0.00009886279,0.00041371203,0.000011623683,0.00016541292,0.00007813976],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00084154145,0.00014828943,0.0002357545,0.00033760557,0.0002556188,0.000025321478,0.000244768,0.00013508604,0.000057433663],"category_scores_gemma":[0.0008099765,0.00010261586,0.000087376866,0.00070283696,0.00031894504,0.00087462383,0.0001005752,0.00031889442,0.0000052775995],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000359772,0.00011741475,0.018928114,0.00015770484,0.000013320794,1.5981017e-8,0.00071495236,0.000006796374,0.9793213,0.000393692,0.0000043002638,0.00030641528],"study_design_scores_gemma":[0.00024086106,0.00004769175,0.24116272,0.00035446335,0.0000030776728,0.0000143399775,0.00035442994,0.00003222921,0.75746334,0.00014297839,0.00009815101,0.00008570852],"about_ca_topic_score_codex":0.000004519615,"about_ca_topic_score_gemma":1.0775676e-7,"teacher_disagreement_score":0.22223459,"about_ca_system_score_codex":0.00018687277,"about_ca_system_score_gemma":0.000037090835,"threshold_uncertainty_score":0.41845533},"labels":[],"label_agreement":null},{"id":"W2094044987","doi":"10.1592/phco.26.4.479","title":"Do Angiotensin‐Converting Enzyme Inhibitors or Angiotensin II Receptor Blockers Decrease the Risk of Hospitalization Secondary to Community‐Acquired Pneumonia? A Nested Case‐Control Study","year":2006,"lang":"en","type":"article","venue":"Pharmacotherapy The Journal of Human Pharmacology and Drug Therapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University Health Centre; University of British Columbia; McGill University; Vancouver General Hospital","funders":"","keywords":"Medicine; Internal medicine; Angiotensin-converting enzyme; Nested case-control study; Case-control study; Confounding; Confidence interval; Pneumonia; Relative risk; Cardiology; Blood pressure","score_opus":0.016167879581757718,"score_gpt":0.31043495754075096,"score_spread":0.29426707795899326,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2094044987","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98632735,0.0031542853,0.00004759532,0.007931704,0.00068410195,0.0017602252,0.000033401324,0.000046378973,0.000014930927],"genre_scores_gemma":[0.98972875,0.0010020877,0.000027198304,0.008125228,0.0009034966,0.000025456451,0.0000022565353,0.00006269758,0.00012280217],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9946157,0.0033610968,0.0010976773,0.00020702515,0.00033428083,0.0003842545],"domain_scores_gemma":[0.9968814,0.0008947931,0.0010583348,0.00032860498,0.0005583889,0.00027843015],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.003203889,0.0003964482,0.00072536484,0.00040308383,0.001980425,0.000035630826,0.00030595856,0.000108161716,0.00051757734],"category_scores_gemma":[0.00005570736,0.00021389204,0.00030648036,0.00055635377,0.00041971848,0.00022682622,0.000054121865,0.00091184414,0.0000022507913],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0050129425,0.0023848298,0.029070571,0.000017132183,0.0020774715,0.00033269884,0.015614082,0.00041508276,0.92766756,0.0000028983727,0.013110327,0.004294414],"study_design_scores_gemma":[0.112813026,0.028521735,0.13937645,0.00041809923,0.010518823,0.016600667,0.021761008,0.0012648639,0.612019,0.0003531084,0.054652855,0.0017004014],"about_ca_topic_score_codex":0.00035973356,"about_ca_topic_score_gemma":0.00008708181,"teacher_disagreement_score":0.3156486,"about_ca_system_score_codex":0.00008120554,"about_ca_system_score_gemma":0.00023778509,"threshold_uncertainty_score":0.99931884},"labels":[],"label_agreement":null},{"id":"W2094104877","doi":"10.1016/j.str.2011.08.011","title":"Inhibition of the Pneumococcal Virulence Factor StrH and Molecular Insights into N-Glycan Recognition and Hydrolysis","year":2011,"lang":"en","type":"article","venue":"Structure","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University; University of Victoria","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research","keywords":"Glycan; Virulence; Virulence factor; Streptococcus pneumoniae; Residue (chemistry); Biochemistry; Glycoside hydrolase; Microbiology; Chemistry; Cell wall; Glycobiology; Innate immune system; Glycosylation; Biology; Bacteria; Hydrolysis; Gene; Glycoprotein; Genetics","score_opus":0.016051413508508125,"score_gpt":0.22539627316003352,"score_spread":0.20934485965152538,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2094104877","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991975,0.00009478862,0.000022221286,0.00010322269,0.000072492636,0.00017396058,0.00002173971,0.0000156023,0.00029849532],"genre_scores_gemma":[0.9996633,0.000030937106,0.000048573507,0.00020506335,0.000028930133,0.0000040338427,0.0000063434372,0.000007603449,0.000005249306],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99952126,0.000036758473,0.00012098812,0.0001471764,0.00009961616,0.00007420335],"domain_scores_gemma":[0.9996748,0.000008807764,0.00006362862,0.00013771522,0.000050737268,0.00006428429],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000015103516,0.00009159151,0.00012613078,0.00006179279,0.000083347746,0.0000054567977,0.00002275267,0.000101866084,0.00005561828],"category_scores_gemma":[0.00002890382,0.000056783752,0.00003732918,0.00012641025,0.00015366619,0.00006230836,0.000030217849,0.00015658018,9.4894693e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001442769,0.000012678126,0.012336843,0.000050092225,0.000025484725,0.0000057993443,0.0016001237,2.038575e-7,0.9821101,0.000048347472,0.0000017283709,0.0037941774],"study_design_scores_gemma":[0.00040010232,0.00016701451,0.43682125,0.000084947926,0.00010618386,0.00006785933,0.00015272264,0.000014974723,0.5535268,0.00841382,0.00015515862,0.000089136825],"about_ca_topic_score_codex":0.000040834373,"about_ca_topic_score_gemma":0.000049621056,"teacher_disagreement_score":0.42858326,"about_ca_system_score_codex":0.00001250423,"about_ca_system_score_gemma":0.000024819361,"threshold_uncertainty_score":0.23155741},"labels":[],"label_agreement":null},{"id":"W2094255773","doi":"10.1016/j.amjmed.2004.10.014","title":"Arterial carbon dioxide tension on admission as a marker of in-hospital mortality in community-acquired pneumonia","year":2005,"lang":"en","type":"article","venue":"The American Journal of Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":57,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Medicine; Hypocapnia; Pneumonia; Odds ratio; Community-acquired pneumonia; Confidence interval; Internal medicine; Hypercapnia; Respiratory system","score_opus":0.01644982901743655,"score_gpt":0.3093709972458599,"score_spread":0.2929211682284234,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2094255773","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9737494,0.000074569056,0.0000029732587,0.024930235,0.00026330614,0.00017535372,9.861928e-7,0.0000075408666,0.0007956209],"genre_scores_gemma":[0.997282,0.0001608085,0.00001611616,0.0020729746,0.00042298617,0.0000026863659,0.0000010857618,0.000016006567,0.000025280153],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9978037,0.0006002093,0.00080592395,0.00009475463,0.00049250136,0.00020294724],"domain_scores_gemma":[0.9983581,0.0002626555,0.0006876376,0.00038090022,0.0001300172,0.00018074675],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014645072,0.00016045432,0.0007833274,0.00035548382,0.000051966563,0.0000021659275,0.00017617321,0.000043865475,0.000042249747],"category_scores_gemma":[0.00062705926,0.00008831552,0.000100790654,0.00048562099,0.0006442179,0.00004964201,0.000035217836,0.000674583,0.0000023057453],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022804537,0.0011927993,0.13066842,0.000027096183,0.00008916017,0.0002511679,0.0030917905,0.000083323386,0.84794044,0.000010781476,0.00011343859,0.014251113],"study_design_scores_gemma":[0.0040639443,0.010409455,0.9763695,0.0014466442,0.00011901286,0.0005014639,0.0028201034,0.00011410007,0.0025956375,0.00008024868,0.0013833321,0.00009656414],"about_ca_topic_score_codex":0.00076709443,"about_ca_topic_score_gemma":0.00008159555,"teacher_disagreement_score":0.8457011,"about_ca_system_score_codex":0.00013799105,"about_ca_system_score_gemma":0.0001541534,"threshold_uncertainty_score":0.36014026},"labels":[],"label_agreement":null},{"id":"W2095034572","doi":"10.1097/inf.0b013e3182784b26","title":"The Burden of Childhood Pneumonia in the Developed World","year":2012,"lang":"en","type":"review","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":87,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Credit Valley Hospital; Université Laval","funders":"","keywords":"Pneumonia; Medicine; Intensive care medicine; Environmental health; Internal medicine","score_opus":0.0340382009221671,"score_gpt":0.3196802344843017,"score_spread":0.28564203356213463,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095034572","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0037190735,0.9901703,0.000005558025,0.0010601593,0.0013451988,0.001418298,0.000025186011,0.000038086713,0.0022181296],"genre_scores_gemma":[0.019563623,0.9712217,0.000001770368,0.0002115547,0.008366721,0.00016184234,0.0000064298924,0.00006676495,0.0003996076],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9959496,0.0011925753,0.0012603522,0.00021927929,0.0007158902,0.0006622968],"domain_scores_gemma":[0.99616736,0.0014000539,0.0010986322,0.0007834648,0.00018527725,0.00036520622],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0021470038,0.00050101057,0.0010657605,0.00065289094,0.0011532656,0.00013389837,0.00068858993,0.00016961852,0.00008767626],"category_scores_gemma":[0.0005357583,0.00019509808,0.001101159,0.0020272017,0.0001815734,0.00009719535,0.00011860892,0.0025401092,0.00013101159],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000862679,0.002397278,0.06998182,0.009512814,0.0019569038,0.00048935524,0.0031162794,0.00009578836,0.0000013706115,0.00049870973,0.009179028,0.9026844],"study_design_scores_gemma":[0.0005118077,0.0000877122,0.021267941,0.0008981554,0.009094737,0.003918122,0.00008372346,0.0000020653638,2.1481956e-8,0.00023441593,0.963632,0.00026930386],"about_ca_topic_score_codex":0.000024715322,"about_ca_topic_score_gemma":0.00003484244,"teacher_disagreement_score":0.954453,"about_ca_system_score_codex":0.0002478434,"about_ca_system_score_gemma":0.0024966076,"threshold_uncertainty_score":0.99976104},"labels":[],"label_agreement":null},{"id":"W2095279765","doi":"10.1007/s11908-004-0008-3","title":"The use of ketolides in treatment of upper respiratory tract infections","year":2004,"lang":"en","type":"article","venue":"Current Infectious Disease Reports","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Health Sciences Centre","funders":"","keywords":"Telithromycin; Streptococcus pneumoniae; Streptococcus pyogenes; Ketolide; Microbiology; Respiratory tract infections; Antibiotics; Pharyngitis; Medicine; Biology; Bacteria; Respiratory system; Internal medicine; Staphylococcus aureus","score_opus":0.06297321522790374,"score_gpt":0.3344173107488841,"score_spread":0.27144409552098037,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095279765","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958335,0.0019060778,0.000032430813,0.00016185941,0.0009775528,0.00071889075,0.000015463404,0.00007374769,0.00028045799],"genre_scores_gemma":[0.99839455,0.0012160348,0.0000025949885,0.00003793742,0.00010710742,0.0001657578,0.000007639698,0.000021627291,0.000046733763],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99827546,0.00008137353,0.0008099284,0.0002720974,0.00028785027,0.0002733204],"domain_scores_gemma":[0.9982776,0.00019202147,0.00044394317,0.00060401816,0.00022354157,0.00025885153],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015858577,0.00020743161,0.00037959014,0.00034057166,0.00016215756,0.000020756735,0.000027321015,0.000076511344,0.000019249657],"category_scores_gemma":[0.0005995967,0.00014074397,0.00039054808,0.00050176913,0.00016330679,0.00014579468,0.000017809276,0.00016210217,0.000005816727],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033441243,0.0066168867,0.984745,0.00009282209,0.000094804025,0.00018931767,0.000075537086,0.0014901768,0.0011085526,0.0001701345,0.00005697779,0.0053263353],"study_design_scores_gemma":[0.0011897985,0.0008118698,0.8530337,0.0002764472,0.00029251588,0.00023572441,0.000011834779,0.0000061637293,0.0011097279,0.00046124985,0.14243217,0.00013877006],"about_ca_topic_score_codex":0.00015757208,"about_ca_topic_score_gemma":0.00009711555,"teacher_disagreement_score":0.14237519,"about_ca_system_score_codex":0.00057427905,"about_ca_system_score_gemma":0.0008388788,"threshold_uncertainty_score":0.57393724},"labels":[],"label_agreement":null},{"id":"W2095286704","doi":"10.2217/17455111.2.3.351","title":"Update on Childhood Pneumococcal Vaccination","year":2008,"lang":"en","type":"article","venue":"Pediatric Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumococcal disease; Vaccination; Epidemiology; Pneumococcal conjugate vaccine; Pneumococcal infections; Serotype; Pediatrics; Population; Disease; Clinical trial; Immunology; Environmental health; Streptococcus pneumoniae; Biology; Internal medicine","score_opus":0.023191813974236482,"score_gpt":0.30217822964766344,"score_spread":0.27898641567342697,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095286704","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9809503,0.00019770267,0.00011006882,0.013772148,0.00037372604,0.0004004468,0.000008311384,0.00018468052,0.0040026125],"genre_scores_gemma":[0.9894312,0.0021281966,0.000043660155,0.0068246094,0.0013163041,0.000020929283,0.000020924988,0.000018459103,0.00019571387],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989309,0.000060491642,0.00026996576,0.00021472921,0.00022818391,0.0002957386],"domain_scores_gemma":[0.99928874,0.000038799677,0.00009269395,0.00020933407,0.00005089324,0.0003195204],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017030725,0.00011364454,0.00021294355,0.0002434442,0.00032215213,0.000004463666,0.000042523472,0.00007194271,0.00013165237],"category_scores_gemma":[0.0000804565,0.00009423388,0.00007652214,0.00040504074,0.000009867674,0.000049118462,0.000012036676,0.00028727044,0.00064012635],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004671247,0.0022752516,0.9461088,0.00025452976,0.000036844565,0.0001407498,0.00092417205,0.000058343783,0.00021915168,0.000723923,0.025346003,0.023865491],"study_design_scores_gemma":[0.0008144247,0.000606836,0.9711968,0.000005020971,0.000017513279,0.00023435989,0.000007794361,0.000021738491,0.000020940102,0.000029087214,0.026962498,0.0000829987],"about_ca_topic_score_codex":0.000016373084,"about_ca_topic_score_gemma":0.0000029828946,"teacher_disagreement_score":0.02508796,"about_ca_system_score_codex":0.0001354515,"about_ca_system_score_gemma":0.00062466046,"threshold_uncertainty_score":0.82277423},"labels":[],"label_agreement":null},{"id":"W2095552780","doi":"10.1371/journal.pone.0065670","title":"Comparative Genomic Analyses of Streptococcus pseudopneumoniae Provide Insight into Virulence and Commensalism Dynamics","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Public Health Ontario; University of Toronto","funders":"","keywords":"Pneumolysin; Biology; Streptococcus pneumoniae; Microbiology; Virulence; Antibiotic resistance; Comparative genomics; Commensalism; Genetics; Streptococcus mitis; Genome; Gene; Antibiotics; Genomics; Streptococcus; Bacteria","score_opus":0.0796121596240085,"score_gpt":0.3149026455349325,"score_spread":0.23529048591092402,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095552780","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99609965,0.00018462678,0.00004566064,0.0014308817,0.000020668795,0.0008002699,0.000015044646,0.000049943377,0.0013532515],"genre_scores_gemma":[0.9987047,0.0000934735,0.0004458717,0.00040318863,0.00003888725,0.00010751387,0.000014537544,0.000013986459,0.00017786592],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990629,0.000057237477,0.00031349194,0.00021732684,0.00018762916,0.00016141053],"domain_scores_gemma":[0.9991344,0.000089514506,0.00014079206,0.0002808779,0.00020744142,0.00014695144],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000493752,0.00015232021,0.0004920987,0.00015309664,0.00009746167,0.00002040422,0.00007094545,0.00007500038,0.000066049055],"category_scores_gemma":[0.000040938507,0.00012283144,0.00005170892,0.00018338514,0.00022259486,0.00013058283,0.0000631118,0.00019185634,0.000052096308],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010688068,0.0008718616,0.103592806,0.00018553999,0.00039471866,0.000003986818,0.0011160214,0.0000057017305,0.8934025,0.00010818248,0.000034762983,0.00027324117],"study_design_scores_gemma":[0.0019210236,0.0015564571,0.6140853,0.0007086381,0.0013488958,0.00002330344,0.0010295839,0.022082714,0.35566637,0.00064017094,0.0004433272,0.00049421197],"about_ca_topic_score_codex":0.000400092,"about_ca_topic_score_gemma":0.000108784894,"teacher_disagreement_score":0.5377361,"about_ca_system_score_codex":0.000076708144,"about_ca_system_score_gemma":0.000067798996,"threshold_uncertainty_score":0.50089204},"labels":[],"label_agreement":null},{"id":"W2095623552","doi":"10.1186/1476-0711-9-3","title":"Characterization of the quinolone resistant determining regions in clinical isolates of pneumococci collected in Canada","year":2010,"lang":"en","type":"article","venue":"Annals of Clinical Microbiology and Antimicrobials","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; Public Health Agency of Canada; Mount Sinai Hospital","funders":"","keywords":"Medical microbiology; Quinolone; Parasitology; Drug resistance; Microbiology; Biology; Multi drug resistant; Virology; Medicine; Antibiotics","score_opus":0.062461408962254175,"score_gpt":0.3614560444478756,"score_spread":0.29899463548562144,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095623552","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99592024,0.000024905394,0.000001269062,0.0031748535,0.00042479756,0.00029670118,0.00011002703,0.000003907164,0.000043288597],"genre_scores_gemma":[0.99812,0.0004796154,0.00002579315,0.001272563,0.000040343642,0.000002794486,0.000016681483,0.000008093091,0.000034088247],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99693245,0.00043876545,0.0021517342,0.00024348938,0.00002828272,0.00020526917],"domain_scores_gemma":[0.99779207,0.000817427,0.00085551955,0.00028219153,0.0001940423,0.00005872969],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010969266,0.00012031447,0.000995951,0.00012445687,0.000039819395,0.0000018671407,0.00013281887,0.00036474183,0.000017473709],"category_scores_gemma":[0.001535631,0.00008611535,0.00017824204,0.00032555556,0.0006558643,0.000032058437,0.00007447541,0.00057470764,3.9682055e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014836066,0.00018496283,0.41038978,0.00004097396,0.00002849018,0.0000028399445,0.000023052515,3.8328255e-7,0.58885455,0.000017653247,0.00007726104,0.00023167611],"study_design_scores_gemma":[0.00090781035,0.00025425354,0.7920656,0.00031193026,0.000025765361,0.000029643672,0.000015571077,0.0000052933324,0.20509763,0.000016808492,0.0012026771,0.00006696417],"about_ca_topic_score_codex":0.010405335,"about_ca_topic_score_gemma":0.25946996,"teacher_disagreement_score":0.3837569,"about_ca_system_score_codex":0.000005682369,"about_ca_system_score_gemma":0.0010784545,"threshold_uncertainty_score":0.99618447},"labels":[],"label_agreement":null},{"id":"W2096291933","doi":"10.1093/jac/dks461","title":"Minimal inhibitory and mutant prevention concentrations of azithromycin, clarithromycin and erythromycin for clinical isolates of Streptococcus pneumoniae","year":2012,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Royal University Hospital; University of Saskatchewan","funders":"National Institutes of Health; National Institute of Allergy and Infectious Diseases; Abbott Canada; Abbott Laboratories","keywords":"Azithromycin; Streptococcus pneumoniae; Clarithromycin; Erythromycin; Microbiology; Minimum inhibitory concentration; Antibacterial agent; Streptococcus; Biology; Medicine; Antibiotics; Bacteria; Genetics","score_opus":0.03491408038410945,"score_gpt":0.3515078659625353,"score_spread":0.3165937855784259,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096291933","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99632037,0.00054911245,0.0006668424,0.001607406,0.00031665113,0.0004794593,0.000027826773,0.0000070837314,0.00002527548],"genre_scores_gemma":[0.9960083,0.0018443794,0.0013062807,0.0003570464,0.00043250233,0.0000024248832,0.0000031588572,0.00002205027,0.000023878876],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99839586,0.00007825591,0.001071289,0.00013195217,0.00011772482,0.00020493349],"domain_scores_gemma":[0.9983743,0.00016897553,0.0008402647,0.00012150204,0.00032678669,0.0001681861],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006001954,0.00015776654,0.0006772824,0.00014130575,0.000070944014,0.000011289715,0.000049286202,0.00019919942,0.000023671248],"category_scores_gemma":[0.0000702317,0.00012698282,0.00026863077,0.00011091418,0.00035143385,0.00023163117,0.000015464226,0.00025198056,2.900006e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026514468,0.0007755331,0.17397805,0.00016139672,0.00025230536,0.0000011723733,0.00036790335,0.0000015183363,0.8218672,0.00003971299,0.0006776102,0.0016124322],"study_design_scores_gemma":[0.008855082,0.0039324993,0.40236813,0.00074748864,0.0004945821,0.00059524743,0.0003956295,0.000038827326,0.57669467,0.0000686603,0.0056019956,0.00020717538],"about_ca_topic_score_codex":0.000002929898,"about_ca_topic_score_gemma":0.000002894775,"teacher_disagreement_score":0.24517253,"about_ca_system_score_codex":0.000024294704,"about_ca_system_score_gemma":0.00021436432,"threshold_uncertainty_score":0.51782095},"labels":[],"label_agreement":null},{"id":"W2096601587","doi":"10.1128/aac.47.6.1875-1881.2003","title":"Antimicrobial Resistance in <i>Haemophilus influenzae</i> and <i>Moraxella catarrhalis</i> Respiratory Tract Isolates: Results of the Canadian Respiratory Organism Susceptibility Study, 1997 to 2002","year":2003,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":98,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Mount Sinai Hospital; University of Manitoba; Health Sciences Centre","funders":"Bayer Canada; GlaxoSmithKline; Pfizer; Bristol-Myers Squibb; Abbott Laboratories","keywords":"Moraxella catarrhalis; Haemophilus influenzae; Microbiology; Cefuroxime; Cefixime; Streptococcus pneumoniae; Ketolide; Moraxella (Branhamella) catarrhalis; Amoxicillin; Cefotaxime; Antibacterial agent; Medicine; Biology; Antibiotics; Cephalosporin","score_opus":0.019000502124163366,"score_gpt":0.2645435288176904,"score_spread":0.245543026693527,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096601587","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929942,0.00009733991,0.0000013279165,0.0039243046,0.00023249189,0.0013512641,0.00020438932,0.000026396892,0.00116832],"genre_scores_gemma":[0.95256907,0.00008769449,0.000047935293,0.046923313,0.00008042725,0.000009160218,0.000004266712,0.000049324062,0.00022880746],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9975471,0.00026048927,0.00077074417,0.00069314305,0.00020404055,0.00052450714],"domain_scores_gemma":[0.99851745,0.000051085084,0.00020019422,0.0007074232,0.00015638508,0.00036747375],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007268533,0.00036784387,0.00057104975,0.0002553879,0.00043978333,0.00006687192,0.00019659362,0.0002519044,0.000042756237],"category_scores_gemma":[0.00013951748,0.0002924164,0.000109261906,0.0007100103,0.0003288575,0.00011536471,0.000048678394,0.0004292179,0.000008960698],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048270557,0.0012919463,0.74309045,0.00017195106,0.000101716025,0.000085038475,0.0039641405,0.0000080947975,0.18305029,0.000047120313,0.067454584,0.0002519448],"study_design_scores_gemma":[0.0071982057,0.00042903738,0.5470177,0.00026690602,0.00007104651,0.000048243237,0.00020104396,6.9483565e-7,0.022895101,0.000027987613,0.42141643,0.0004276135],"about_ca_topic_score_codex":0.009094589,"about_ca_topic_score_gemma":0.16541156,"teacher_disagreement_score":0.35396183,"about_ca_system_score_codex":0.00018094329,"about_ca_system_score_gemma":0.0006122959,"threshold_uncertainty_score":0.9999528},"labels":[],"label_agreement":null},{"id":"W2096672359","doi":"10.1007/s10096-005-0059-x","title":"Drug-resistant pneumococcal pneumonia: clinical relevance and approach to management","year":2005,"lang":"en","type":"review","venue":"European Journal of Clinical Microbiology & Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":49,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Medicine; Intensive care medicine; Streptococcus pneumoniae; Pneumonia; Antimicrobial; Medical microbiology; Infectious disease (medical specialty); Community-acquired pneumonia; Drug resistance; Antibiotic resistance; Pneumococcal infections; Pathogen; Penicillin; Immunology; Disease; Antibiotics; Internal medicine; Microbiology; Biology","score_opus":0.05950710213978975,"score_gpt":0.3941151896889424,"score_spread":0.3346080875491526,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096672359","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0077238567,0.97911966,0.0001463669,0.00036442777,0.0027078732,0.0014614225,0.00014483517,0.00013358769,0.00819799],"genre_scores_gemma":[0.0039004616,0.9895122,0.00026832343,0.0016899877,0.0038147445,0.000020702097,0.00004284798,0.00015427139,0.0005964729],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.98798746,0.004691535,0.005553231,0.0010010545,0.00016823299,0.0005984647],"domain_scores_gemma":[0.99351776,0.0016301763,0.0024030881,0.00074865174,0.0003302224,0.0013701043],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0034913616,0.00079179823,0.004840439,0.000593275,0.00022640948,0.000066597604,0.00049588364,0.00036814017,0.00003350442],"category_scores_gemma":[0.0016885765,0.0005531322,0.0030281132,0.00043717958,0.00079737714,0.00009093452,0.00041862603,0.0025397986,0.00036256472],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022972979,0.0035350632,0.004280378,0.0037519354,0.0029776774,0.0013312266,0.000016463908,0.0000046660325,0.00007439621,0.00005273899,0.0053960104,0.9783497],"study_design_scores_gemma":[0.0020667766,0.0021714026,0.01842004,0.0055513964,0.0065580853,0.0030908196,0.000013023423,2.7151216e-7,1.5179474e-7,0.000007037151,0.961643,0.0004779957],"about_ca_topic_score_codex":4.603921e-7,"about_ca_topic_score_gemma":0.0000015726888,"teacher_disagreement_score":0.9778717,"about_ca_system_score_codex":0.00012837016,"about_ca_system_score_gemma":0.0004968305,"threshold_uncertainty_score":0.9997614},"labels":[],"label_agreement":null},{"id":"W2096682515","doi":"10.1128/jcm.00789-07","title":"Evolution of an International External Quality Assurance Model To Support Laboratory Investigation of <i>Streptococcus pneumoniae</i> , Developed for the SIREVA Project in Latin America, from 1993 to 2005","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health","funders":"Instituto Mexicano del Seguro Social","keywords":"Streptococcus pneumoniae; Quality assurance; Latin Americans; Microbiology; Medicine; External quality assessment; Biology; Political science; Pathology","score_opus":0.0972799036016067,"score_gpt":0.4392077174611662,"score_spread":0.3419278138595595,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096682515","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9774187,0.000027113512,0.019795006,0.0014311498,0.0005359936,0.00053201464,0.0002329215,0.000005061552,0.000022001914],"genre_scores_gemma":[0.9873105,0.000024009132,0.010543316,0.0017078659,0.00034920964,0.000012534174,0.000015125079,0.000010404051,0.000026986338],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9970522,0.0002547862,0.0021852264,0.00019711076,0.00011931979,0.00019138027],"domain_scores_gemma":[0.9965229,0.0012415363,0.0011696174,0.00019744474,0.0007170431,0.00015146079],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0030069794,0.000116155206,0.00061537966,0.00022244883,0.000028742814,0.00000423121,0.00023352608,0.0001766149,0.000012786803],"category_scores_gemma":[0.0021903585,0.00008082461,0.00018088768,0.00026694222,0.00017145209,0.00010395657,0.000037878242,0.00035350985,0.000002738886],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006396557,0.00018647099,0.37667897,0.000013673484,0.00005689874,0.000002923749,0.00015876212,0.0007208417,0.61884195,0.000016189115,0.00027963615,0.0024040174],"study_design_scores_gemma":[0.001979253,0.0016093409,0.97100717,0.00017170221,0.000058128346,0.000020038671,0.00013861252,0.0003783256,0.018163115,0.00010911485,0.006259456,0.000105736675],"about_ca_topic_score_codex":0.000097970566,"about_ca_topic_score_gemma":0.00054536894,"teacher_disagreement_score":0.60067886,"about_ca_system_score_codex":0.00011317303,"about_ca_system_score_gemma":0.0011140348,"threshold_uncertainty_score":0.3295932},"labels":[],"label_agreement":null},{"id":"W2097384181","doi":"10.1128/iai.00572-08","title":"<i>Moraxella catarrhalis</i> Binding to Host Cellular Receptors Is Mediated by Sequence-Specific Determinants Not Conserved among All UspA1 Protein Variants","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; U.S. Public Health Service","keywords":"Moraxella catarrhalis; Biology; Bacterial adhesin; Fibronectin; Cell adhesion; Cell biology; Plasma protein binding; Microbiology; Receptor; Laminin; Binding protein; DNA-binding protein; Conserved sequence; Moraxella (Branhamella) catarrhalis; Integrin; Pilus; Cell adhesion molecule; Peptide sequence; Cell; Genetics; Haemophilus influenzae; Virulence; Gene; Extracellular matrix; Transcription factor","score_opus":0.056336615107166636,"score_gpt":0.275934078908312,"score_spread":0.21959746380114537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097384181","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972625,0.00006215092,0.00005890105,0.00053715846,0.00050012564,0.00083254604,0.00008506347,0.00017202474,0.00048957026],"genre_scores_gemma":[0.9965213,0.00053572893,0.000020783671,0.001433963,0.00008055631,0.0000772957,0.00009134164,0.00003548357,0.0012035328],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998359,0.00023502688,0.00042594346,0.00035746506,0.00024184688,0.0003807069],"domain_scores_gemma":[0.99880254,0.000069354406,0.00015498597,0.00040614087,0.00017114184,0.00039584306],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00032953965,0.00028388944,0.00038623108,0.00027153437,0.0007500069,0.00005005742,0.000085306245,0.0002550877,0.00030166886],"category_scores_gemma":[0.00016816432,0.0002608667,0.0001035734,0.000538511,0.00027739294,0.00023865406,0.00006915928,0.0005257456,0.00021262375],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005492507,0.00018356412,0.15941866,0.00003541259,0.000054639302,0.00005340054,0.0006909943,4.6763208e-7,0.8353019,0.0000015506499,0.0039526154,0.00025188684],"study_design_scores_gemma":[0.0018245346,0.00076000695,0.19112158,0.0002417095,0.000077999095,0.00041280934,0.00013146069,0.00006309315,0.6469121,0.0000033569106,0.15793975,0.0005116261],"about_ca_topic_score_codex":0.003137078,"about_ca_topic_score_gemma":0.0001542581,"teacher_disagreement_score":0.18838981,"about_ca_system_score_codex":0.00013664822,"about_ca_system_score_gemma":0.00010630977,"threshold_uncertainty_score":0.9999844},"labels":[],"label_agreement":null},{"id":"W2097991427","doi":"10.1128/aac.46.10.3261-3264.2002","title":"Penicillin-Binding Protein 1A, 2B, and 2X Alterations in Canadian Isolates of Penicillin-Resistant <i>Streptococcus pneumoniae</i>","year":2002,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Health Sciences Centre","funders":"","keywords":"Penicillin; Penicillin binding proteins; Streptococcus pneumoniae; Microbiology; Penicillin resistance; Streptococcaceae; Biology; Gene; Antibiotics; Genetics","score_opus":0.016278098266340548,"score_gpt":0.24513774648507375,"score_spread":0.2288596482187332,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097991427","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9902006,0.00006180345,0.0000031573788,0.008061577,0.00005317507,0.0006481901,0.000055711567,0.000018878478,0.00089693087],"genre_scores_gemma":[0.994752,0.00068828795,0.000039444563,0.0033645495,0.00005085697,0.000018976632,0.000012781373,0.00002538951,0.0010477023],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989003,0.00002849877,0.00035056446,0.00028532313,0.000081754806,0.00035356998],"domain_scores_gemma":[0.9994314,0.00001728371,0.00009021544,0.0001726643,0.000065350134,0.00022314383],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009504845,0.0001922034,0.00032284216,0.00022000149,0.0001919731,0.000042203475,0.00005804533,0.00012383256,0.00024868656],"category_scores_gemma":[0.000014014071,0.00016890142,0.00007042068,0.0002090914,0.00011867421,0.00008565328,0.00001502344,0.00017910395,0.000009986582],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035195324,0.00022709015,0.09644186,0.00009459545,0.00006768102,0.000032143656,0.00080883177,0.000003861824,0.8987989,0.00004888438,0.0018781653,0.0015628047],"study_design_scores_gemma":[0.018010948,0.0025311538,0.26098582,0.002371355,0.00033426104,0.0003554622,0.00070559257,0.0034957374,0.31827497,0.000110002984,0.39076248,0.0020622283],"about_ca_topic_score_codex":0.010272203,"about_ca_topic_score_gemma":0.01966718,"teacher_disagreement_score":0.5805239,"about_ca_system_score_codex":0.00006172583,"about_ca_system_score_gemma":0.000077013145,"threshold_uncertainty_score":0.99822134},"labels":[],"label_agreement":null},{"id":"W2098157368","doi":"10.17269/cjph.105.4315","title":"Uptake of pneumococcal vaccines in the Nordic region of Nunavik, province of Quebec, Canada","year":2014,"lang":"en","type":"article","venue":"Canadian Journal of Public Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Nunavik Regional Board of Health and Social Services; Université du Québec; Centre hospitalier universitaire de Québec; Université Laval","funders":"Canadian Institutes of Health Research; Sanofi Pasteur; Sanofi; Public Health Agency; Public Health Agency of Canada; Pfizer","keywords":"Pneumococcal conjugate vaccine; Pneumococcal polysaccharide vaccine; Vaccination; Medicine; Immunization; Population; Environmental health; Demography; Pediatrics; Streptococcus pneumoniae; Immunology; Pneumococcal disease; Antibody; Biology","score_opus":0.03249789219002487,"score_gpt":0.27008697603673454,"score_spread":0.23758908384670968,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098157368","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9598838,0.00033086826,0.00008630431,0.038757365,0.00023661078,0.00019991271,0.000010120062,0.0000012939697,0.00049370003],"genre_scores_gemma":[0.9983105,0.000036636877,0.000013572395,0.0014139568,0.0001258952,0.0000015783975,0.0000019268557,0.000008708458,0.000087233246],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981538,0.00026845952,0.00089370005,0.00008068566,0.0002607878,0.00034258256],"domain_scores_gemma":[0.99778634,0.00011784861,0.00069395074,0.0002425267,0.00039402544,0.00076529506],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014790118,0.00009184828,0.00046434285,0.00042939186,0.00005903768,0.000006793311,0.00020718863,0.00006120302,0.000020861033],"category_scores_gemma":[0.00075548276,0.00006241123,0.00008630697,0.00044358734,0.00009450271,0.00008511985,0.0000047971553,0.00032134747,2.0327077e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028794439,0.00024453102,0.9035557,0.001139426,0.000112235386,0.00026211873,0.0026539965,0.00009382064,0.0015127567,0.002944126,0.018115925,0.069336556],"study_design_scores_gemma":[0.00067763095,0.0005263874,0.86632717,0.00027282155,0.00001663388,0.00042198139,0.00092584494,0.000027929678,0.000043150303,0.000031131185,0.13067646,0.00005284957],"about_ca_topic_score_codex":0.9387146,"about_ca_topic_score_gemma":0.99846816,"teacher_disagreement_score":0.11256054,"about_ca_system_score_codex":0.0005364539,"about_ca_system_score_gemma":0.047235098,"threshold_uncertainty_score":0.9581662},"labels":[],"label_agreement":null},{"id":"W2098397643","doi":"10.1139/w08-052","title":"Stimulation of respiratory immunity by oral administration of<i>Lactococcus lactis</i>","year":2008,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Fondo para la Investigación Científica y Tecnológica; Consejo Nacional de Investigaciones Científicas y Técnicas","keywords":"Lactococcus lactis; Bronchoalveolar lavage; Immune system; Immunology; Respiratory tract; Oral administration; Innate immune system; Microbiology; Immunity; Medicine; Biology; Lung; Respiratory system; Pharmacology; Internal medicine; Bacteria","score_opus":0.02921723495894291,"score_gpt":0.2738399289198363,"score_spread":0.24462269396089337,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098397643","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99843645,0.00039520944,0.00007187202,0.00025961854,0.00028516268,0.00011255933,0.00007759242,0.0000026292867,0.00035887823],"genre_scores_gemma":[0.9994209,0.000013121664,0.000046588975,0.00036836535,0.000056594352,7.550163e-7,0.000017914297,0.0000075410044,0.00006824643],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991377,0.00012589122,0.000489474,0.00006363091,0.000037064186,0.00014621193],"domain_scores_gemma":[0.998855,0.00005224918,0.00039756185,0.00012836348,0.00034392538,0.00022293285],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002047153,0.000082127204,0.0003151152,0.00025863067,0.000083069746,0.000001755177,0.000074175085,0.00015591417,0.00012893837],"category_scores_gemma":[0.00013347778,0.00007207005,0.00010970425,0.00014198165,0.0002876592,0.000060140585,0.0000038445173,0.0002544517,0.000004344278],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008262883,0.00005026512,0.0804717,0.000018477245,0.000059962196,0.00007331019,0.000120600045,0.000014520315,0.9120362,0.000009608427,0.006796554,0.00026620424],"study_design_scores_gemma":[0.003078803,0.004828875,0.2539244,0.00014315701,0.0001942825,0.0056946795,0.00014861199,0.0000040587674,0.41761038,0.000027390353,0.31413856,0.00020679388],"about_ca_topic_score_codex":0.0005311013,"about_ca_topic_score_gemma":0.0021677956,"teacher_disagreement_score":0.4944258,"about_ca_system_score_codex":0.00009528978,"about_ca_system_score_gemma":0.0022829445,"threshold_uncertainty_score":0.40498456},"labels":[],"label_agreement":null},{"id":"W2098691243","doi":"10.1016/s0140-6736(14)62447-8","title":"Adjunct prednisone therapy for patients with community-acquired pneumonia: a multicentre, double-blind, randomised, placebo-controlled trial","year":2015,"lang":"en","type":"article","venue":"The Lancet","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":406,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Gottfried und Julia Bangerter-Rhyner-Stiftung; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Inselspital, Universitätsspital Bern; Universität Basel","keywords":"Medicine; Prednisone; Placebo; Pneumonia; Odds ratio; Hazard ratio; Internal medicine; Randomized controlled trial; Clinical endpoint; Clinical trial; Community-acquired pneumonia; Intention-to-treat analysis; Surgery; Confidence interval","score_opus":0.07784655766863417,"score_gpt":0.3219530260353753,"score_spread":0.2441064683667411,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098691243","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9798313,0.00011014922,0.00011632435,0.0022478835,0.0005341909,0.015103862,0.000031963427,0.00012388828,0.0019004511],"genre_scores_gemma":[0.99385136,0.000037719026,0.00007233483,0.0014111104,0.0010789392,0.0028134214,0.00008421194,0.00004276367,0.00060813664],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9983215,0.0004354907,0.00035555664,0.00017429986,0.0003245441,0.00038865782],"domain_scores_gemma":[0.99793583,0.00059054926,0.00021065514,0.00077459955,0.000302689,0.000185666],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010362095,0.00024358914,0.0010091029,0.00006913855,0.00038188035,0.00004934214,0.00025520797,0.00010814304,0.000017555307],"category_scores_gemma":[0.00023014384,0.00012052682,0.00019710159,0.00016531657,0.00013035566,0.00008667001,0.000033548808,0.0003011958,0.000023834626],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.99014443,0.0014266282,0.0040065297,0.000027216509,0.00052046863,0.000001914983,0.0012016394,0.00003898748,0.0005288709,0.00001792449,0.0016670733,0.00041831707],"study_design_scores_gemma":[0.97784823,0.0039502643,0.0013760177,0.0000541183,0.00033896026,0.0000060985913,0.00021170349,0.0001766476,0.00013078585,0.0000389881,0.015710613,0.000157598],"about_ca_topic_score_codex":0.000043934426,"about_ca_topic_score_gemma":0.000051867624,"teacher_disagreement_score":0.014043539,"about_ca_system_score_codex":0.00006694956,"about_ca_system_score_gemma":0.0001868881,"threshold_uncertainty_score":0.49149412},"labels":[],"label_agreement":null},{"id":"W2098930740","doi":"10.1111/j.1365-2958.2005.04914.x","title":"A proteomic analysis of penicillin resistance in <i>Streptococcus pneumoniae</i> reveals a novel role for PstS, a subunit of the phosphate ABC transporter","year":2005,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôpital Maisonneuve-Rosemont; Université Laval","funders":"Institute of Infection and Immunity; Canadian Institutes of Health Research","keywords":"Biology; ATP-binding cassette transporter; Streptococcus pneumoniae; Microbiology; Operon; Penicillin; Mutant; Gene; Transporter; Phenotype; Bacteria; Protein subunit; Gene expression; Genetics; Antibiotics","score_opus":0.007481514160792874,"score_gpt":0.2434721597281533,"score_spread":0.23599064556736044,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098930740","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99570423,0.00044760178,0.000936258,0.0011711747,0.00003167523,0.00129781,0.00027041612,0.0000116195715,0.00012923994],"genre_scores_gemma":[0.9984114,0.000015487298,0.00035577593,0.0007413719,0.00001276081,0.00018144213,0.000045616547,0.000017860195,0.00021826426],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99871945,0.00007125917,0.0005996673,0.000290766,0.000054030334,0.000264798],"domain_scores_gemma":[0.99908394,0.00003505127,0.00026264467,0.00044995948,0.00012758776,0.000040836956],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022690183,0.00016068644,0.0006233864,0.0002548001,0.000037435137,0.0000022229492,0.00016578729,0.00017179895,0.000025694362],"category_scores_gemma":[0.000038275295,0.00011791918,0.00047471322,0.0007591845,0.00017705104,0.000019692956,0.000020589297,0.00016594246,0.0000016493399],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000112134185,0.00027001262,0.03282849,0.00007664234,0.00045239244,0.000003674311,0.00023537906,0.0003209093,0.9655199,0.00009128197,0.000020090847,0.00006907325],"study_design_scores_gemma":[0.002367101,0.00018260328,0.07349761,0.00014045776,0.0013146545,0.000015688263,0.00002468386,0.00010820874,0.90975857,0.000041956082,0.012381311,0.00016716002],"about_ca_topic_score_codex":0.000027801507,"about_ca_topic_score_gemma":0.00047102544,"teacher_disagreement_score":0.055761352,"about_ca_system_score_codex":0.00005619532,"about_ca_system_score_gemma":0.00010556952,"threshold_uncertainty_score":0.48086047},"labels":[],"label_agreement":null},{"id":"W2099418672","doi":"10.1086/592385","title":"Guideline Tyranny: A Response to the Article by Baum and Kaltsas","year":2008,"lang":"en","type":"letter","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Guideline; Family medicine; Intensive care medicine; Pathology","score_opus":0.03177443790107386,"score_gpt":0.36515092795275217,"score_spread":0.3333764900516783,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099418672","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.19423462,0.0011869634,0.00008760775,0.8013975,0.0010185431,0.0009020662,0.00036500153,0.00030853684,0.0004991685],"genre_scores_gemma":[0.046235923,0.0006030022,0.000004470294,0.9427057,0.00573757,0.00016486237,0.00012870163,0.000080765254,0.004339043],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9968175,0.0007185671,0.0009927566,0.00065275596,0.00035647096,0.00046193184],"domain_scores_gemma":[0.9964012,0.0017665067,0.00019107941,0.0008393225,0.00022812626,0.0005738031],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00053322216,0.00036784608,0.0007402989,0.00014383133,0.00040918443,0.00006398449,0.00014713146,0.00065635913,0.00018889738],"category_scores_gemma":[0.004142785,0.00024067237,0.00047050286,0.00030563507,0.0005158883,0.00005174857,0.00012918662,0.0016643138,0.0005121436],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016762193,0.00034946972,0.046003878,0.0000367953,0.00019630101,0.00043698313,0.000020545798,0.0000031835011,0.00013356662,7.748002e-7,0.95080477,0.0018460957],"study_design_scores_gemma":[0.0012297658,0.0011951505,0.060950737,0.00008051796,0.00054484647,0.00016678756,0.000007503464,0.000025456307,0.000007143098,0.000041101604,0.93548054,0.00027045477],"about_ca_topic_score_codex":0.000026735159,"about_ca_topic_score_gemma":0.0000115411485,"teacher_disagreement_score":0.1479987,"about_ca_system_score_codex":0.0000769987,"about_ca_system_score_gemma":0.00039830827,"threshold_uncertainty_score":0.9814334},"labels":[],"label_agreement":null},{"id":"W2099441385","doi":"10.1086/317652","title":"Efficacy of Recombinant Human Granulocyte Colony‐Stimulating Factor in a Murine Model of Pneumococcal Pneumonia: Effects of Lung Inflammation and Timing of Treatment","year":2001,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval","funders":"","keywords":"Streptococcus pneumoniae; Pneumonia; Myeloperoxidase; Granulocyte colony-stimulating factor; Pneumococcal pneumonia; Immunology; Lung; Granulocyte; Nasal administration; Inflammation; Colony-forming unit; Medicine; Biology; Microbiology; Internal medicine; Chemotherapy; Antibiotics; Bacteria","score_opus":0.019381789543654344,"score_gpt":0.29773737999879263,"score_spread":0.2783555904551383,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099441385","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989404,0.00026615872,0.000105425985,0.000043386302,0.00007418758,0.0004999508,0.000006199695,0.000008688468,0.00005562327],"genre_scores_gemma":[0.9995226,0.00039382445,0.000008353431,0.000004249523,0.000038126716,0.000005927896,0.0000015206375,0.000014526303,0.000010832989],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99855125,0.00015244185,0.0008708466,0.00008384446,0.00020345792,0.00013813647],"domain_scores_gemma":[0.99801284,0.00054262095,0.0009522704,0.00016643708,0.00023158554,0.0000942274],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001903298,0.00015674948,0.00067188713,0.0003681125,0.00006906286,0.0000034086618,0.00005913335,0.000061071376,0.000006529358],"category_scores_gemma":[0.0002978474,0.00010191366,0.00019906508,0.00023939242,0.00014310487,0.00009883623,0.000027268132,0.00014016681,1.103814e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028923876,0.0007592477,0.45241243,0.00045630854,0.00016137201,0.000011463743,0.0006895844,0.013450393,0.5307646,0.0000106025645,7.1346926e-7,0.0009940813],"study_design_scores_gemma":[0.006590095,0.0043489514,0.93616235,0.0012804989,0.0009191935,0.0001333565,0.000053486794,0.009406308,0.040870026,0.00014101971,0.0000024473354,0.00009224192],"about_ca_topic_score_codex":0.00011301837,"about_ca_topic_score_gemma":0.000035909514,"teacher_disagreement_score":0.48989454,"about_ca_system_score_codex":0.00014211025,"about_ca_system_score_gemma":0.00014636516,"threshold_uncertainty_score":0.41559187},"labels":[],"label_agreement":null},{"id":"W2099586127","doi":"10.1093/jac/dki060","title":"Meta-analysis of bacterial resistance to macrolides","year":2005,"lang":"en","type":"review","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Streptococcus pneumoniae; Erythromycin; Azithromycin; Medicine; Meta-analysis; Confidence interval; Clarithromycin; Antibiotic resistance; Drug resistance; Respiratory tract infections; Internal medicine; Streptococcus pyogenes; Antibiotics; Microbiology; Biology; Respiratory system; Helicobacter pylori; Bacteria","score_opus":0.10552366730811917,"score_gpt":0.3817478028499382,"score_spread":0.276224135541819,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099586127","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00046178114,0.99601644,0.00008965908,0.0020904068,0.00037106525,0.00047185374,0.00018817082,0.000013018278,0.0002975761],"genre_scores_gemma":[0.00006489756,0.99467087,0.001186294,0.0018716699,0.0008562365,0.0000038837725,0.000016336462,0.00006227408,0.001267521],"study_design_codex":"meta_analysis","study_design_gemma":"not_applicable","domain_scores_codex":[0.9972023,0.00014643006,0.0018361013,0.0002416966,0.00033113686,0.000242331],"domain_scores_gemma":[0.99699724,0.00010968439,0.0018464488,0.0004251984,0.00041484027,0.00020661631],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005059765,0.00041757702,0.006976051,0.0014554738,0.00004997003,0.000033703403,0.00028354043,0.00031632933,0.0012923917],"category_scores_gemma":[0.000041836676,0.00026859326,0.00819339,0.001380418,0.00007438056,0.00007329153,0.000021217242,0.00046012236,0.000015116621],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005005112,0.00084069185,0.000007805505,0.0046367706,0.81696963,0.00012684532,0.00025511076,0.000026271113,0.022614483,0.0000103064895,0.033583257,0.1204283],"study_design_scores_gemma":[0.00032778253,0.000110904846,0.0000058870914,0.0006184505,0.3141585,0.00017185077,0.0000015899308,7.1420594e-8,0.000548898,5.113472e-7,0.68391395,0.00014163376],"about_ca_topic_score_codex":0.0000021726848,"about_ca_topic_score_gemma":0.00001760347,"teacher_disagreement_score":0.65033066,"about_ca_system_score_codex":0.00013280405,"about_ca_system_score_gemma":0.00053270423,"threshold_uncertainty_score":0.99997663},"labels":[],"label_agreement":null},{"id":"W2099812290","doi":"10.1086/341900","title":"The Battle against Emerging Antibiotic Resistance: Should Fluoroquinolones Be Used to Treat Children?","year":2002,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; McMaster University","funders":"","keywords":"Streptococcus pneumoniae; Antibiotic resistance; Antibiotics; Medicine; Pneumococcal infections; Drug resistance; Respiratory tract infections; Multiple drug resistance; Antimicrobial; Microbiology; Biology; Respiratory system; Internal medicine","score_opus":0.08195747998970604,"score_gpt":0.3725662584543435,"score_spread":0.29060877846463745,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099812290","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98213476,0.0012993109,0.000025145617,0.010013506,0.0012987553,0.0005494233,0.00004225981,0.00046158984,0.004175222],"genre_scores_gemma":[0.99216306,0.0011492635,0.000003199635,0.0039353496,0.0008326805,0.000034999284,0.000017281922,0.000045811204,0.0018183544],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99791086,0.00019899674,0.0006343553,0.00048627684,0.00030125765,0.00046824678],"domain_scores_gemma":[0.9971854,0.0012852052,0.00012402948,0.0006980689,0.00012173498,0.00058555865],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020303903,0.00026045434,0.00047319615,0.00012312626,0.0007824272,0.00008932704,0.00015053737,0.00016980772,0.00015301896],"category_scores_gemma":[0.002542165,0.00017589066,0.00046055106,0.00047877894,0.00036374203,0.00008494169,0.00007426802,0.00038125142,0.00037079028],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000309805,0.0011797518,0.9476544,0.00003808761,0.00017731341,0.000045183766,0.000057638637,0.000025755,0.00053727,0.00010993947,0.037637986,0.012505693],"study_design_scores_gemma":[0.0017296468,0.000645535,0.92516094,0.0001423733,0.00045122384,0.000013703622,0.00004167096,0.000056277422,0.00016661198,0.000045447014,0.07124324,0.0003033362],"about_ca_topic_score_codex":0.000006721754,"about_ca_topic_score_gemma":0.00007877117,"teacher_disagreement_score":0.03360526,"about_ca_system_score_codex":0.00007636525,"about_ca_system_score_gemma":0.000059317706,"threshold_uncertainty_score":0.7172613},"labels":[],"label_agreement":null},{"id":"W2099867105","doi":"10.1016/s0149-2918(02)80088-1","title":"Oral gemifloxacin versus sequential therapy with intravenous ceftriaxone/oral cefuroxime with or without a macrolide in the treatment of patients hospitalized with community-acquired pneumonia: A randomized, open-label, multicenter study of clinical efficacy and tolerability","year":2002,"lang":"en","type":"article","venue":"Clinical Therapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":67,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Cefuroxime; Medicine; Ceftriaxone; Gemifloxacin; Community-acquired pneumonia; Pneumonia; Population; Antibacterial agent; Internal medicine; Randomized controlled trial; Concomitant; Antibiotics; Surgery","score_opus":0.2942405388694598,"score_gpt":0.45675434732795084,"score_spread":0.16251380845849106,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099867105","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9917173,0.00007372848,0.000027852699,0.00025391334,0.00015879876,0.007643647,0.000024273182,0.000031121646,0.00006938579],"genre_scores_gemma":[0.9976708,0.00092786434,0.00048484385,0.0005677632,0.000054755194,0.00020152384,0.000014169269,0.000053504857,0.000024754252],"study_design_codex":"observational","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9919445,0.0046874555,0.0019971048,0.00050773297,0.00048691715,0.0003763192],"domain_scores_gemma":[0.9946351,0.002944222,0.00080472435,0.0010969773,0.00033260125,0.00018635612],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002216575,0.00046714948,0.002832266,0.00009290595,0.00020381405,0.000055755216,0.00039234437,0.00023461487,0.000028389148],"category_scores_gemma":[0.00016615678,0.00020642391,0.00016440458,0.0004100849,0.001687862,0.00011136835,0.00007256589,0.000645236,0.0000013883116],"study_design_candidate":"randomized_trial","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.36526015,0.0694799,0.5469606,0.00002622548,0.0018932305,0.000038491646,0.005289579,0.000007978334,0.00004270807,0.0000017836909,8.990494e-7,0.010998439],"study_design_scores_gemma":[0.58675057,0.12685187,0.28280905,0.00011703945,0.0014655222,0.000011867282,0.000859059,0.0005377617,0.000029036792,0.0000038633702,0.0003397184,0.00022467245],"about_ca_topic_score_codex":0.00032535565,"about_ca_topic_score_gemma":0.0006116241,"teacher_disagreement_score":0.26415157,"about_ca_system_score_codex":0.000059215625,"about_ca_system_score_gemma":0.00014721714,"threshold_uncertainty_score":0.8417723},"labels":[],"label_agreement":null},{"id":"W2099901987","doi":"","title":"Treating acute exacerbations of chronic bronchitis and community-acquired pneumonia: how effective are respiratory fluoroquinolones?","year":2006,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital","funders":"","keywords":"Medicine; Chronic bronchitis; Intensive care medicine; Pneumonia; Respiratory tract infections; Bronchitis; Comorbidity; Antibacterial agent; Randomized controlled trial; Community-acquired pneumonia; Lower respiratory tract infection; Antibiotics; Internal medicine; Respiratory system","score_opus":0.016729638970906995,"score_gpt":0.23707879707808516,"score_spread":0.22034915810717817,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099901987","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940768,0.00089162245,0.000071503,0.00096124574,0.00013934402,0.0013843544,0.000054423457,0.00014343722,0.002277279],"genre_scores_gemma":[0.99739385,0.000038641403,0.000018990531,0.00015745357,0.00023536413,0.0015979683,0.000019693935,0.00003334853,0.0005046863],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985591,0.00038178888,0.00027795287,0.0002213985,0.00018324357,0.00037648834],"domain_scores_gemma":[0.9988148,0.00027593074,0.00022870372,0.00041200532,0.00012978778,0.00013873496],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031690224,0.00020757019,0.00044270244,0.00023535009,0.00049885176,0.00003235664,0.00008255588,0.00015575624,0.000006006791],"category_scores_gemma":[0.00016819808,0.00018934242,0.00011813863,0.00034490938,0.00031510775,0.00015796408,0.00007058627,0.0003563476,0.0000029035396],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000104782855,0.0013074302,0.5805175,0.0006942782,0.00074579584,0.000112887545,0.0006486066,0.000049753355,0.25307372,0.0002732959,0.000992265,0.16147973],"study_design_scores_gemma":[0.0016541587,0.00041269427,0.9830856,0.00008830387,0.0003094083,0.000111692,0.00017485456,0.000028510512,0.010234046,0.000054237218,0.003683128,0.00016338524],"about_ca_topic_score_codex":0.00015867419,"about_ca_topic_score_gemma":0.00031005163,"teacher_disagreement_score":0.40256813,"about_ca_system_score_codex":0.00023335444,"about_ca_system_score_gemma":0.000058668113,"threshold_uncertainty_score":0.77211595},"labels":[],"label_agreement":null},{"id":"W2099996735","doi":"10.1086/653114","title":"Impact of the Pneumococcal Vaccine on Long‐Term Morbidity and Mortality of Adults at High Risk for Pneumonia","year":2010,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta; McMaster University; Dalhousie University; Provincial Laboratory of Public Health; Hamilton Health Sciences","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Hazard ratio; Confidence interval; Pneumonia; Internal medicine; Cohort study; Pneumococcal vaccine; Population; Propensity score matching; Pneumococcal pneumonia; Pediatrics; Streptococcus pneumoniae; Antibiotics","score_opus":0.027207567238074357,"score_gpt":0.3847017286289604,"score_spread":0.357494161390886,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099996735","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974308,0.00002850871,0.000010270032,0.00010815268,0.0008481823,0.00090462365,0.0005372435,0.000060521692,0.00007167365],"genre_scores_gemma":[0.9992615,0.0001301653,0.000001410072,0.00010556742,0.00037444715,0.0000528712,0.000020355223,0.000023984156,0.000029712903],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99834555,0.00015171329,0.0007179893,0.00036646953,0.00019031393,0.00022798276],"domain_scores_gemma":[0.9972131,0.0009886165,0.00048670385,0.0007029256,0.00024683503,0.00036177624],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028506765,0.0002194257,0.00064673,0.00006721429,0.00019341288,0.000008815791,0.000106756015,0.00022086172,0.00007703903],"category_scores_gemma":[0.00231191,0.00013009491,0.00085478585,0.0001649778,0.0004144401,0.000049717913,0.00010449103,0.00046324465,0.0000044971084],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003093525,0.0021274234,0.98468196,0.00015934341,0.00032929523,0.0000034637883,0.000012462901,0.0000140934835,0.010552734,0.000038540293,0.00008274017,0.0016885877],"study_design_scores_gemma":[0.0033579958,0.0029492255,0.99153477,0.00009514443,0.00081157853,0.00001313715,0.0000016609637,0.000056502016,0.00075684563,0.0002592915,0.00003783619,0.00012600115],"about_ca_topic_score_codex":0.0001843131,"about_ca_topic_score_gemma":0.00070347206,"teacher_disagreement_score":0.009795888,"about_ca_system_score_codex":0.00004376202,"about_ca_system_score_gemma":0.0001754009,"threshold_uncertainty_score":0.5305116},"labels":[],"label_agreement":null},{"id":"W2100193713","doi":"10.1086/587519","title":"Moxifloxacin Monotherapy Is Effective in Hospitalized Patients with Community‐Acquired Pneumonia: The MOTIV Study—A Randomized Clinical Trial","year":2008,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Bayer (Canada)","funders":"","keywords":"Medicine; Moxifloxacin; Regimen; Randomization; Confidence interval; Clinical endpoint; Levofloxacin; Pneumonia; Internal medicine; Community-acquired pneumonia; Randomized controlled trial; Ceftriaxone; Surgery; Antibiotics","score_opus":0.044091979407067314,"score_gpt":0.3798979509372143,"score_spread":0.33580597153014696,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100193713","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9865064,0.00010145872,0.000087785986,0.00041466375,0.0011127089,0.011053103,0.000035056248,0.0002794916,0.0004093531],"genre_scores_gemma":[0.99379516,0.00032397298,0.0000023059747,0.003654539,0.00050858903,0.0015129151,0.000032026368,0.00007360704,0.000096864394],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9868761,0.009376595,0.002069641,0.00065059616,0.00055027753,0.0004768001],"domain_scores_gemma":[0.9877748,0.009584005,0.0005833541,0.0011976509,0.00038528393,0.00047491348],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.003055567,0.00050872,0.0024200322,0.00022198677,0.0008169764,0.000050026265,0.0002837701,0.0003323097,0.00007815406],"category_scores_gemma":[0.004967518,0.00028985625,0.0012770423,0.0007076896,0.0019708707,0.0001761565,0.00012117239,0.001318298,0.00006795496],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.1436135,0.026664428,0.8261109,0.000019102845,0.0010236889,0.000062929845,0.00058402,0.000011811205,0.000001722422,0.00000679171,0.00021028375,0.001690826],"study_design_scores_gemma":[0.42305237,0.008424552,0.56727713,0.000056792618,0.0005675266,0.0000039088213,0.000079800164,0.000043767668,0.0000011043799,0.00010758824,0.00018692401,0.00019854364],"about_ca_topic_score_codex":0.00020919404,"about_ca_topic_score_gemma":0.00010877856,"teacher_disagreement_score":0.27943885,"about_ca_system_score_codex":0.00012890784,"about_ca_system_score_gemma":0.00033330623,"threshold_uncertainty_score":0.99995536},"labels":[],"label_agreement":null},{"id":"W2100285773","doi":"10.1586/ers.10.52","title":"Short-course fluoroquinolones in acute exacerbations of chronic bronchitis","year":2010,"lang":"en","type":"review","venue":"Expert Review of Respiratory Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Credit Valley Hospital; University of Toronto","funders":"GlaxoSmithKline","keywords":"Medicine; Moxifloxacin; Levofloxacin; Chronic bronchitis; Intensive care medicine; Regimen; Short course; Bronchitis; Comorbidity; Internal medicine; Antibiotics; Pediatrics","score_opus":0.052115305318115604,"score_gpt":0.4217399384530637,"score_spread":0.3696246331349481,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100285773","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000042913303,0.9936284,0.000017200191,0.0007028436,0.0011354809,0.0028428817,0.000060613947,0.00006322904,0.0015064706],"genre_scores_gemma":[0.000026113294,0.9963952,0.00006088108,0.0011574775,0.0013481292,0.0005909278,0.00013026515,0.0001170082,0.0001740561],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9942702,0.00045840495,0.003243358,0.00071081903,0.00081130717,0.0005059221],"domain_scores_gemma":[0.99611354,0.00031775262,0.0011033209,0.001726387,0.00039496008,0.00034403167],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010874039,0.0008228719,0.006560717,0.00089494564,0.000072427196,0.000003452921,0.0004935662,0.0007712464,0.00079861446],"category_scores_gemma":[0.0006519337,0.0005605537,0.0010954393,0.001515371,0.0009406824,0.000105258514,0.0001132293,0.0014908158,0.000039204024],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000004743554,0.00031073115,0.000078789744,0.12889452,0.00034190793,0.00010359221,0.00006082665,4.960223e-8,0.0009838245,0.00007219203,0.005927239,0.8632216],"study_design_scores_gemma":[0.00047439575,0.0008392746,0.00019234148,0.30992854,0.0020533998,0.00026189865,0.000010565676,4.1245127e-7,0.000033502543,0.0000015878628,0.6859339,0.00027020602],"about_ca_topic_score_codex":0.000024914832,"about_ca_topic_score_gemma":0.00003339015,"teacher_disagreement_score":0.8629514,"about_ca_system_score_codex":0.00027889747,"about_ca_system_score_gemma":0.0020025515,"threshold_uncertainty_score":0.9996846},"labels":[],"label_agreement":null},{"id":"W2100481339","doi":"10.1093/jac/dkh475","title":"Pharmacodynamic activity of telithromycin against macrolide-susceptible and macrolide-resistant Streptococcus pneumoniae simulating clinically achievable free serum and epithelial lining fluid concentrations","year":2004,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Telithromycin; Ketolide; Streptococcus pneumoniae; Microbiology; Pharmacodynamics; Antibacterial agent; Macrolide Antibiotics; Pharmacokinetics; Pharmacology; Chemistry; Antibiotics; Medicine; Biology; Erythromycin","score_opus":0.011496151224798707,"score_gpt":0.29247361057964644,"score_spread":0.28097745935484775,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100481339","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99413496,0.00008418079,0.0005883059,0.0042639473,0.00023554526,0.00039800262,0.000112614856,0.000029673049,0.00015277062],"genre_scores_gemma":[0.9953244,0.0011773927,0.0011953402,0.0018829039,0.0003435371,0.0000016215515,0.000002627803,0.00004533571,0.000026895208],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979327,0.00009155018,0.001078243,0.00027621398,0.0002625902,0.00035870695],"domain_scores_gemma":[0.99809295,0.00017542271,0.00085664843,0.00024926465,0.00036992118,0.00025582084],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00055207853,0.00028520543,0.0007834311,0.00019822168,0.00025333304,0.00006226486,0.00014536295,0.00019026833,0.000033237986],"category_scores_gemma":[0.00017209492,0.00024236039,0.00025727868,0.0002344362,0.00031517583,0.00027430445,0.00005426455,0.00061587995,0.000001249233],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007005506,0.0004380917,0.028452853,0.00013187583,0.00027975425,0.000061576546,0.00046057274,0.0015919027,0.9634198,0.000008536149,0.00007170944,0.0043827826],"study_design_scores_gemma":[0.02433724,0.0031902764,0.05503173,0.0012533474,0.0004010911,0.00053945725,0.00023351531,0.0014112289,0.9114351,0.00014499146,0.0015285463,0.00049343635],"about_ca_topic_score_codex":0.000026893602,"about_ca_topic_score_gemma":0.000029864474,"teacher_disagreement_score":0.051984657,"about_ca_system_score_codex":0.00010721953,"about_ca_system_score_gemma":0.00046399658,"threshold_uncertainty_score":0.98831695},"labels":[],"label_agreement":null},{"id":"W2100756392","doi":"10.1007/bf03404065","title":"The epidemiology of invasive pneumococcal disease in British Columbia following implementation of an infant immunization program: increases in herd immunity and replacement disease.","year":2012,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; Provincial Laboratory of Public Health; Alberta Health Services; University of British Columbia; BC Centre for Disease Control","funders":"","keywords":"Herd immunity; Epidemiology; Pneumococcal conjugate vaccine; Medicine; Pneumococcal disease; Incidence (geometry); Serotype; Immunization; Herd; Pediatrics; Vaccination; Environmental health; Immunology; Streptococcus pneumoniae; Veterinary medicine; Biology; Internal medicine; Antibody","score_opus":0.025176176232265368,"score_gpt":0.31471966085163716,"score_spread":0.2895434846193718,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100756392","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968046,0.00096713484,0.0000022051827,0.00012497614,0.00006180253,0.0019895628,0.000022916298,0.000015822925,0.0000110135115],"genre_scores_gemma":[0.9975855,0.00024649836,0.000012944061,0.000069046364,0.000023506636,0.0019565527,0.000088765904,0.000009361865,0.000007829654],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984008,0.0005400803,0.0005250177,0.00012810448,0.000103792285,0.00030219718],"domain_scores_gemma":[0.9989867,0.0003088611,0.00018243364,0.00022933476,0.000049135197,0.0002434947],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012888962,0.000068271365,0.0002524218,0.000072616655,0.0000978512,0.000012689752,0.00005483453,0.000038866812,0.0000060091093],"category_scores_gemma":[0.0014110078,0.00007427763,0.000057418503,0.0002562782,0.00012281626,0.00019738883,0.00006182802,0.00011052448,1.0239595e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008610179,0.0005484647,0.9648371,0.000082318445,0.000030210693,0.000005798372,0.00010522935,0.000004104686,0.00024100245,0.000010028471,0.000004114143,0.03404554],"study_design_scores_gemma":[0.0012406082,0.00010597438,0.9975828,0.000074128235,0.00007958086,0.0000046255177,0.00060760084,0.000028999206,0.000045112287,0.00008351018,0.00008106458,0.00006602758],"about_ca_topic_score_codex":0.021181108,"about_ca_topic_score_gemma":0.040811542,"teacher_disagreement_score":0.033979513,"about_ca_system_score_codex":0.000079315054,"about_ca_system_score_gemma":0.00010794078,"threshold_uncertainty_score":0.98533696},"labels":[],"label_agreement":null},{"id":"W2100760716","doi":"10.1093/jac/dkh356","title":"Clinical and bacteriological efficacy and safety of 5 and 7 day regimens of telithromycin once daily compared with a 10 day regimen of clarithromycin twice daily in patients with mild to moderate community-acquired pneumonia","year":2004,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":126,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Cegep de Saint Jerome","funders":"","keywords":"Telithromycin; Medicine; Clarithromycin; Regimen; Streptococcus pneumoniae; Population; Internal medicine; Haemophilus influenzae; Moraxella catarrhalis; Erythromycin; Antibacterial agent; Ketolide; Adverse effect; Antibiotics; Gastroenterology; Helicobacter pylori; Microbiology; Biology","score_opus":0.021421130432743872,"score_gpt":0.2889901355251298,"score_spread":0.26756900509238596,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100760716","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99756056,0.0000482762,0.00020096055,0.0016378341,0.000027405655,0.00046297404,0.000025380345,0.000006455363,0.00003014959],"genre_scores_gemma":[0.99593896,0.00030427857,0.002936132,0.00075282686,0.000028009687,8.9327705e-7,0.0000055985706,0.000024566614,0.000008737316],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9979656,0.00034529172,0.0010624487,0.0002141724,0.00020717355,0.00020535046],"domain_scores_gemma":[0.9982,0.00022791098,0.0007451311,0.00028227805,0.00035330985,0.00019136333],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000847721,0.00024054527,0.0012428333,0.00020130104,0.00009037454,0.000014614164,0.0001237731,0.000172377,0.0000068745635],"category_scores_gemma":[0.000060706272,0.00016176306,0.000069295544,0.00026798045,0.000779384,0.00013878843,0.00005210644,0.00047211917,1.4456921e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.02186968,0.0025203887,0.34514523,0.00019974813,0.0004491561,0.00001895175,0.0032288763,0.0003040606,0.62524235,0.000009738377,0.000060529183,0.0009513014],"study_design_scores_gemma":[0.027049692,0.009011485,0.9448489,0.0018440115,0.00012094023,0.00013694713,0.0001851166,0.000012517312,0.016399197,0.000009184105,0.00020631001,0.00017570717],"about_ca_topic_score_codex":0.00007209709,"about_ca_topic_score_gemma":0.000039914095,"teacher_disagreement_score":0.60884315,"about_ca_system_score_codex":0.000040367093,"about_ca_system_score_gemma":0.0001773186,"threshold_uncertainty_score":0.6596506},"labels":[],"label_agreement":null},{"id":"W2100922283","doi":"10.1164/rccm.200603-350oc","title":"A Worldwide Perspective of Atypical Pathogens in Community-acquired Pneumonia","year":2007,"lang":"en","type":"article","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":230,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Alexandra Hospital; Grey Nuns Community Hospital; University of Alberta","funders":"","keywords":"Medicine; Incidence (geometry); Community-acquired pneumonia; Atypical pneumonia; Regimen; Pneumonia; Internal medicine; Antimicrobial","score_opus":0.021760500280359883,"score_gpt":0.34544614515680483,"score_spread":0.32368564487644497,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100922283","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9921008,0.0026045076,0.00038962878,0.0031014227,0.0001666363,0.00011700088,0.000005131714,0.000011652504,0.0015032688],"genre_scores_gemma":[0.99655336,0.0000497825,0.00014926052,0.0029142129,0.000307835,0.0000018885431,6.590915e-7,0.000017963075,0.000005031263],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978089,0.00043300417,0.00086411904,0.00015055362,0.00042576925,0.0003176985],"domain_scores_gemma":[0.9970057,0.0010888146,0.00023938164,0.00024203894,0.0009383399,0.0004857512],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014379431,0.00018566006,0.0008736914,0.00060219597,0.000119608885,0.0000048889356,0.000116696596,0.000081376806,0.00003762516],"category_scores_gemma":[0.002327587,0.00013646227,0.00014181926,0.0007058158,0.0025020507,0.000082934246,0.000039523482,0.00082993304,0.000001025289],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0030389267,0.0008591113,0.558221,0.0004239398,0.00015351926,0.002582098,0.017456211,0.0000031941647,0.34325352,0.0052267355,0.0000664635,0.068715304],"study_design_scores_gemma":[0.0028383846,0.020589763,0.82721776,0.0011059816,0.00034466758,0.0013015344,0.13927428,0.0000020529903,0.0017997175,0.0004458493,0.0048792767,0.00020073325],"about_ca_topic_score_codex":0.000086783475,"about_ca_topic_score_gemma":0.00011005835,"teacher_disagreement_score":0.34145382,"about_ca_system_score_codex":0.00016198358,"about_ca_system_score_gemma":0.00020533467,"threshold_uncertainty_score":0.921891},"labels":[],"label_agreement":null},{"id":"W2101232275","doi":"10.1128/aac.49.10.4035-4041.2005","title":"Novel, Single-Dose Microsphere Formulation of Azithromycin versus 7-Day Levofloxacin Therapy for Treatment of Mild to Moderate Community-Acquired Pneumonia in Adults","year":2005,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":70,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Levofloxacin; Azithromycin; Medicine; Regimen; Population; Pneumonia; Confidence interval; Adverse effect; Internal medicine; Clinical endpoint; Community-acquired pneumonia; Surgery; Randomized controlled trial; Antibiotics","score_opus":0.053188228778580586,"score_gpt":0.31054658858436907,"score_spread":0.2573583598057885,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101232275","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960083,0.000041962543,0.000279514,0.0023026133,0.0000944436,0.0010847392,0.00007513728,0.000019336308,0.00009394881],"genre_scores_gemma":[0.9966338,0.00050034904,0.0010110628,0.0015687065,0.00007274853,0.000026845588,0.000044075216,0.00003477735,0.0001075828],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990546,0.000041099924,0.0004050685,0.00019630518,0.00008067426,0.00022222672],"domain_scores_gemma":[0.9993857,0.000063063766,0.00013695372,0.00023754618,0.00010031072,0.00007638795],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010450982,0.00021384127,0.00046527525,0.000111876616,0.000115110764,0.0000123959835,0.000062915016,0.00011851855,0.000025094314],"category_scores_gemma":[0.0000074662394,0.00017733869,0.00013055395,0.00017916129,0.000059198206,0.000084453175,0.00001119115,0.000046448837,0.0000013913879],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00435752,0.0029306218,0.0056905523,0.00008209265,0.00013429642,6.08014e-7,0.0041076886,0.00014075603,0.94317514,0.000011218018,0.00020354067,0.039165948],"study_design_scores_gemma":[0.039284382,0.005583527,0.10736121,0.00038863698,0.000053089407,0.000009248133,0.0002354269,0.0007644307,0.81937695,0.000007913842,0.026645605,0.0002895897],"about_ca_topic_score_codex":0.00025840968,"about_ca_topic_score_gemma":0.00047290136,"teacher_disagreement_score":0.123798214,"about_ca_system_score_codex":0.00009410195,"about_ca_system_score_gemma":0.000044281907,"threshold_uncertainty_score":0.7231662},"labels":[],"label_agreement":null},{"id":"W2101613223","doi":"10.1093/jac/dkt113","title":"Genomic analysis and reconstruction of cefotaxime resistance in Streptococcus pneumoniae","year":2013,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Cefotaxime; Biology; Streptococcus pneumoniae; Genetics; Microbiology; Penicillin binding proteins; Gene; Bacteria; Bacterial protein","score_opus":0.006226997019429495,"score_gpt":0.23460346260114526,"score_spread":0.22837646558171576,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101613223","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969553,0.00009099287,0.00010625573,0.0023322043,0.00009321232,0.00016774208,0.0000031306029,0.000005167979,0.0002459921],"genre_scores_gemma":[0.9981526,0.0004964258,0.00076567073,0.0003911781,0.000082795,0.0000012411155,6.1610615e-7,0.000011106839,0.00009832463],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990682,0.00003637644,0.00056268513,0.0001103398,0.00009612294,0.00012629174],"domain_scores_gemma":[0.9991523,0.00002621484,0.00043822362,0.00012328548,0.0001849545,0.00007501806],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015652497,0.000104101215,0.0004794064,0.0005618113,0.00003002301,0.000016303562,0.000054428718,0.00008470247,0.00012606017],"category_scores_gemma":[0.000015147935,0.00008400599,0.00019954021,0.00047683492,0.00010363551,0.00013016445,0.0000071437903,0.00020317819,0.000002517732],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004966935,0.00008314755,0.29420602,0.000025945195,0.00025919697,0.000006176921,0.00013345317,0.000010179925,0.70254064,0.0000028696184,0.00016891422,0.002513787],"study_design_scores_gemma":[0.0019472004,0.00018015661,0.9105143,0.00015378342,0.0002118602,0.00020745557,0.00006337959,0.00002578505,0.08537823,0.00007432289,0.0011437011,0.000099851386],"about_ca_topic_score_codex":0.000031398453,"about_ca_topic_score_gemma":0.00006017678,"teacher_disagreement_score":0.6171624,"about_ca_system_score_codex":0.000060595434,"about_ca_system_score_gemma":0.00008570954,"threshold_uncertainty_score":0.3425665},"labels":[],"label_agreement":null},{"id":"W2101820614","doi":"10.1371/journal.ppat.1004364","title":"Unravelling the Multiple Functions of the Architecturally Intricate Streptococcus pneumoniae β-galactosidase, BgaA","year":2014,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"Natural Sciences and Engineering Research Council of Canada; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Michael Smith Health Research BC; Canadian Light Source","keywords":"Streptococcus pneumoniae; Microbiology; Bacterial adhesin; Biology; Pathogen; Pneumococcal infections; Glycoconjugate; Human pathogen; Enzyme; Virulence; Biochemistry; Gene; Antibiotics","score_opus":0.016542361340035776,"score_gpt":0.22282894651905286,"score_spread":0.20628658517901707,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101820614","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9912042,0.00003419422,0.0019809892,0.003267756,0.00030930075,0.0007447778,0.00006148349,0.00009906063,0.0022982417],"genre_scores_gemma":[0.99848634,0.0000108081995,0.000034715653,0.0006093337,0.00025294107,0.00008496434,0.0000074075638,0.000028662993,0.00048483515],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986252,0.00018658061,0.00034534629,0.00025020534,0.00030374812,0.00028889402],"domain_scores_gemma":[0.9983759,0.00041067303,0.0001785608,0.00076033094,0.00015893593,0.00011561399],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019879157,0.0001839733,0.0002587342,0.000101499594,0.00041374398,0.000018290828,0.00020641691,0.000088406574,0.00005473329],"category_scores_gemma":[0.000589491,0.000092890376,0.00027135597,0.000467252,0.00020838501,0.000029118339,0.00008484704,0.00043399667,0.00007221135],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010136942,0.0001781399,0.20926611,0.00004158719,0.00009767854,0.0000024179906,0.00033756913,0.00034020265,0.7870955,0.000071696304,0.0000841885,0.002474777],"study_design_scores_gemma":[0.001134229,0.00042734423,0.8788887,0.00020234704,0.0006743281,0.00007248044,0.0002593815,0.0061508114,0.08814714,0.00020478314,0.023548806,0.00028963236],"about_ca_topic_score_codex":0.0000139316735,"about_ca_topic_score_gemma":0.000040770272,"teacher_disagreement_score":0.6989484,"about_ca_system_score_codex":0.00003650839,"about_ca_system_score_gemma":0.000093587885,"threshold_uncertainty_score":0.37879598},"labels":[],"label_agreement":null},{"id":"W2102006061","doi":"10.4049/jimmunol.1401413","title":"TLR-Mediated Inflammatory Responses to <i>Streptococcus pneumoniae</i> Are Highly Dependent on Surface Expression of Bacterial Lipoproteins","year":2014,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":89,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Biotechnology and Biological Sciences Research Council; University of Pennsylvania; Academy of Medical Sciences; Wellcome Trust; Medical Research Council; National Institute for Health and Care Research","keywords":"TLR2; Streptococcus pneumoniae; Proinflammatory cytokine; Biology; Microbiology; TLR4; Chemokine; Immunology; Immune system; Innate immune system; Inflammation","score_opus":0.01101881961216587,"score_gpt":0.24722940122910153,"score_spread":0.23621058161693567,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102006061","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948902,0.00025771794,0.000054450156,0.0034748416,0.0008270292,0.00032307638,0.000011207787,0.000023911753,0.00013752596],"genre_scores_gemma":[0.9986285,0.00018102201,0.000019828749,0.00065944943,0.00027133443,0.0000054385673,0.0000014760744,0.000022527525,0.00021040042],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99795485,0.00071477046,0.000671734,0.000117036354,0.0002986339,0.00024295395],"domain_scores_gemma":[0.99782765,0.0005505413,0.00073681265,0.00046116026,0.00030194776,0.00012191636],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008582395,0.00017599478,0.0004944724,0.00022238631,0.00012345515,0.000008211589,0.0002663997,0.00017924182,0.0000954787],"category_scores_gemma":[0.00085420633,0.00010486212,0.00013431569,0.00015458257,0.00015125884,0.000076385564,0.00008483567,0.0005512471,0.00006680553],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027111424,0.00018843953,0.00629893,0.000019489977,0.000101299265,0.000031679265,0.00035890273,0.00014994673,0.9891398,0.000008991582,0.0005975969,0.00039379686],"study_design_scores_gemma":[0.0024852033,0.004838051,0.14976375,0.00050679833,0.000119348624,0.0004678987,0.00028505153,0.0000036849162,0.80223364,0.000020781707,0.039135158,0.00014061577],"about_ca_topic_score_codex":0.000008496821,"about_ca_topic_score_gemma":0.000009239402,"teacher_disagreement_score":0.18690613,"about_ca_system_score_codex":0.00007715357,"about_ca_system_score_gemma":0.00017242225,"threshold_uncertainty_score":0.4276153},"labels":[],"label_agreement":null},{"id":"W2103061944","doi":"10.1517/14656566.3.8.1131","title":"The evolution and role of macrolides in infectious diseases","year":2002,"lang":"en","type":"review","venue":"Expert Opinion on Pharmacotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Saskatchewan; St. Paul's Hospital; Royal University Hospital","funders":"","keywords":"Azithromycin; Clarithromycin; Erythromycin; Medicine; Antibiotics; Intensive care medicine; Macrolide Antibiotics; Antibiotic resistance; Antimicrobial; Infectious disease (medical specialty); Adverse effect; Pharmacology; Disease; Internal medicine; Microbiology; Biology","score_opus":0.03350763329633764,"score_gpt":0.3894406921246051,"score_spread":0.3559330588282674,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103061944","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00007813179,0.997529,0.0000036111558,0.00015329149,0.00057263963,0.0007776589,0.000021389571,0.000052758158,0.0008115613],"genre_scores_gemma":[0.0007649013,0.998084,0.0000013066807,0.000286713,0.0004385636,0.00026771487,0.000010553983,0.000044368648,0.00010189049],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987158,0.00020069751,0.00043941254,0.00025946007,0.0001834196,0.00020116974],"domain_scores_gemma":[0.99919873,0.00021937917,0.0002007895,0.0002410487,0.000033853565,0.0001061883],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009521416,0.00027740333,0.00073956116,0.00028542528,0.00013700707,0.000017691978,0.00008370927,0.00014651849,0.00007695605],"category_scores_gemma":[0.000023203762,0.0001666718,0.00026436077,0.00029757535,0.00012247644,0.000042737778,0.000015436617,0.0003005677,0.000016311335],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027991162,0.00028947415,0.00033411305,0.00056426536,0.00013301209,0.0000029362893,0.00010731642,7.693231e-7,0.00021996908,0.0003100467,0.0008540151,0.9971561],"study_design_scores_gemma":[0.00090150366,0.00023136861,0.00009916702,0.0027787196,0.00003010372,0.000063951185,0.00002684761,0.00003491845,0.000025392881,0.000052372412,0.99560356,0.00015207597],"about_ca_topic_score_codex":0.000029162828,"about_ca_topic_score_gemma":0.0000020060188,"teacher_disagreement_score":0.99700403,"about_ca_system_score_codex":0.0001841172,"about_ca_system_score_gemma":0.00011442308,"threshold_uncertainty_score":0.6796679},"labels":[],"label_agreement":null},{"id":"W2103287903","doi":"10.1186/1756-0500-1-64","title":"Streptococcus pneumoniae early response genes to human lung epithelial cells","year":2008,"lang":"en","type":"article","venue":"BMC Research Notes","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Saskatchewan","funders":"National Institute of Allergy and Infectious Diseases; Genome Prairie; University of Saskatchewan; Genome British Columbia; Saskatchewan Health Research Foundation; Genome Canada; St. Jude Children's Research Hospital","keywords":"Streptococcus pneumoniae; Biology; Transcriptome; Gene; Gene expression; Microbiology; Phenotype; Respiratory tract; Microarray analysis techniques; Pathogen; A549 cell; Cell culture; Cell biology; Genetics; Respiratory system","score_opus":0.16381874350274592,"score_gpt":0.42526414634442333,"score_spread":0.2614454028416774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103287903","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960371,0.00008932693,0.0001391779,0.0014046663,0.00016999253,0.0012147455,0.00003803645,0.00015322318,0.0007536772],"genre_scores_gemma":[0.99401027,0.000038375598,0.00013448346,0.00017959556,0.00069123105,0.00023885694,0.0000046831005,0.00005150429,0.004650991],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99660224,0.0007461864,0.00034715032,0.0005093534,0.0009703388,0.00082475896],"domain_scores_gemma":[0.99688816,0.0011808657,0.00004134901,0.0007508664,0.00048844516,0.0006503316],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0014280723,0.00020840981,0.0003246589,0.00073032343,0.0010110002,0.000060130653,0.0002577359,0.00016383578,0.00023760457],"category_scores_gemma":[0.0013346926,0.00017302531,0.00017914792,0.00083219644,0.00035846894,0.00011189886,0.00018995348,0.0006207861,0.0011930381],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003141617,0.00017791457,0.22251269,0.000039891773,0.00002566603,0.00023420081,0.00043447508,0.000026846568,0.77436155,0.000031166,0.001445191,0.0003962342],"study_design_scores_gemma":[0.0007854171,0.0013003488,0.6517785,0.00006162572,0.000015382031,0.000049970236,0.0000627074,0.000030026677,0.31768078,0.000032078908,0.028020618,0.00018251916],"about_ca_topic_score_codex":0.00025624153,"about_ca_topic_score_gemma":0.000106193074,"teacher_disagreement_score":0.45668077,"about_ca_system_score_codex":0.00017971122,"about_ca_system_score_gemma":0.0006398298,"threshold_uncertainty_score":0.9995847},"labels":[],"label_agreement":null},{"id":"W2104836659","doi":"10.1517/14656566.3.3.277","title":"Ketolides in the treatment of respiratory infections","year":2002,"lang":"en","type":"review","venue":"Expert Opinion on Pharmacotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Ketolide; Telithromycin; Streptococcus pneumoniae; Microbiology; Medicine; Chronic bronchitis; Erythromycin; Respiratory tract infections; Streptococcus pyogenes; Pharmacology; Antibiotics; Biology; Bacteria; Staphylococcus aureus; Respiratory system; Internal medicine","score_opus":0.18356362710583396,"score_gpt":0.47271462341288684,"score_spread":0.2891509963070529,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104836659","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00006416853,0.9942377,0.000002901164,0.00029484543,0.0010439634,0.0015962251,0.000025157953,0.000059658734,0.0026753312],"genre_scores_gemma":[0.000025556941,0.9957323,0.0000038296466,0.0019350663,0.0010466254,0.0009937974,0.000019734458,0.000063326734,0.0001797404],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980106,0.00045215985,0.0006731701,0.00034589754,0.00027136574,0.00024683774],"domain_scores_gemma":[0.9987777,0.0003102259,0.0002515359,0.0005314781,0.000038092017,0.00009100425],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014196338,0.00043962465,0.0012067183,0.0006287847,0.000113932736,0.000015519448,0.00015099667,0.00023683882,0.0004881924],"category_scores_gemma":[0.000010810817,0.00024246193,0.00077333837,0.0006479888,0.000097422424,0.000040991075,0.0000045602774,0.0003208669,0.00009448038],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016061307,0.0035605168,0.000038127593,0.00052795606,0.00026310928,0.000020347,0.0008338711,0.0000012998556,0.00014148212,0.000077409284,0.004926581,0.98959327],"study_design_scores_gemma":[0.0014342082,0.0022263096,0.000017776227,0.00247972,0.00005204682,0.000061495506,0.000027219712,0.000002115867,0.000110891895,0.0000028321242,0.99338603,0.00019936476],"about_ca_topic_score_codex":0.0000170997,"about_ca_topic_score_gemma":0.000001980311,"teacher_disagreement_score":0.9893939,"about_ca_system_score_codex":0.0002793728,"about_ca_system_score_gemma":0.00017579048,"threshold_uncertainty_score":0.988731},"labels":[],"label_agreement":null},{"id":"W2105037209","doi":"10.1086/315775","title":"A Randomized Controlled Trial of Filgrastim for the Treatment of Hospitalized Patients with Multilobar Pneumonia","year":2000,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier universitaire de Québec","funders":"Amgen","keywords":"Filgrastim; Medicine; Bacteremia; Pneumonia; Granulocyte colony-stimulating factor; Internal medicine; Randomized controlled trial; Surgery; Antibiotics; Chemotherapy","score_opus":0.006612192701292909,"score_gpt":0.2595092095150394,"score_spread":0.2528970168137465,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105037209","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99380434,0.00057471974,0.000096307806,0.0002320112,0.00023578694,0.004817155,0.000042450178,0.000011858841,0.00018534981],"genre_scores_gemma":[0.99840474,0.0011026092,0.00000581175,0.00006350206,0.00017174418,0.00013511028,0.000002413756,0.000015750747,0.000098342556],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9983976,0.0003032908,0.0007822219,0.000067855246,0.000312413,0.0001366501],"domain_scores_gemma":[0.9964442,0.0019350142,0.0008182287,0.00021692379,0.0004872043,0.00009842295],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034222737,0.00017487234,0.0013461978,0.00010113685,0.0001429902,0.000008452385,0.00008132809,0.00004038036,0.000113699585],"category_scores_gemma":[0.00042069767,0.00006196523,0.0009803363,0.00013411103,0.00029495027,0.00004755734,0.0000034555399,0.000068591326,0.0000011945956],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.9731496,0.00459241,0.016589351,0.000027094358,0.00278503,0.0000022610716,0.0002586706,0.0006834982,0.00016907488,0.0000072846137,0.00004535281,0.0016903906],"study_design_scores_gemma":[0.954704,0.0140267955,0.022946697,0.000093117145,0.007426576,0.000018969531,0.000044258763,0.00015552931,0.00009214378,0.000068546535,0.00035799344,0.00006540835],"about_ca_topic_score_codex":0.000036703113,"about_ca_topic_score_gemma":0.0000054240563,"teacher_disagreement_score":0.018445617,"about_ca_system_score_codex":0.00006904723,"about_ca_system_score_gemma":0.00018532225,"threshold_uncertainty_score":0.2526869},"labels":[],"label_agreement":null},{"id":"W2105760605","doi":"10.1371/journal.pone.0100640","title":"Incomplete Recovery of Pneumococcal CD4 T Cell Immunity after Initiation of Antiretroviral Therapy in HIV-Infected Malawian Adults","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Wellcome Trust","keywords":"ELISPOT; Immunology; Immunity; CD154; Streptococcus pneumoniae; Cellular immunity; Medicine; Pneumococcal infections; Pneumolysin; Immune system; Biology; T cell; Microbiology; Cytotoxic T cell; CD40","score_opus":0.022649515090887376,"score_gpt":0.2272840054903264,"score_spread":0.20463449039943904,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105760605","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972491,0.000030709296,0.000024887995,0.000110950685,0.000040428164,0.00036658606,0.000028855042,0.00003311773,0.002115359],"genre_scores_gemma":[0.9994414,0.00008617831,0.000115621595,0.00015866992,0.0000672485,0.000031015978,0.000040760748,0.000019067096,0.000040048333],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99887055,0.00018366464,0.00041451008,0.00014797441,0.00021427842,0.00016900885],"domain_scores_gemma":[0.99919,0.00010409863,0.00017458826,0.00030634817,0.00016424294,0.000060721977],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018583058,0.00012556971,0.00040904133,0.00026740148,0.000028420329,0.000004269783,0.00006364761,0.00012014857,0.000110941524],"category_scores_gemma":[0.00012179644,0.000112685346,0.0000915636,0.00029480038,0.00008079779,0.00010186885,0.000028080702,0.00025259415,0.000022552676],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003194221,0.0016440649,0.49133202,0.00019971421,0.00003647499,0.0000023415926,0.00015688762,0.0000017589397,0.5059029,0.000006383004,0.0000016921291,0.00039635255],"study_design_scores_gemma":[0.0021746357,0.0022132033,0.84007263,0.0004726798,0.00004854038,0.0000018847866,0.000019440437,0.00023117787,0.15460989,0.000032663334,0.000028020853,0.00009524197],"about_ca_topic_score_codex":0.00009671183,"about_ca_topic_score_gemma":0.000039041177,"teacher_disagreement_score":0.351293,"about_ca_system_score_codex":0.00004086554,"about_ca_system_score_gemma":0.00005684958,"threshold_uncertainty_score":0.4595175},"labels":[],"label_agreement":null},{"id":"W2105774885","doi":"10.1186/s12890-015-0041-z","title":"Prevalence and impact of Streptococcus pneumoniae in adult cystic fibrosis patients: a retrospective chart review and capsular serotyping study","year":2015,"lang":"en","type":"article","venue":"BMC Pulmonary Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Cystic Fibrosis Canada; University of Calgary","funders":"Cystic Fibrosis Canada","keywords":"Medicine; Streptococcus pneumoniae; Cystic fibrosis; Serotype; Carriage; Population; Respiratory tract infections; Immunology; Internal medicine; Microbiology; Antibiotics; Respiratory system; Pathology; Biology","score_opus":0.022610789821335207,"score_gpt":0.3129306617108332,"score_spread":0.29031987188949804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105774885","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98826784,0.008607647,0.000005572479,0.00031605552,0.00006754271,0.002401652,0.00002828911,0.000030953906,0.00027447022],"genre_scores_gemma":[0.99753886,0.00195242,0.000012176846,0.0001810377,0.000076352415,0.00013530522,0.000011880762,0.000020511077,0.00007145273],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99822587,0.00019175158,0.00056361046,0.0004131953,0.00036122205,0.00024433061],"domain_scores_gemma":[0.9986374,0.00008484407,0.00020176171,0.00035303948,0.00039741088,0.0003255709],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00053458184,0.00025003593,0.00078728073,0.00022733882,0.000049615777,0.0000038820863,0.00006733404,0.00007384163,0.00003181214],"category_scores_gemma":[0.00130148,0.00017144425,0.000057419038,0.0004725025,0.00020448449,0.00014057544,0.00007075995,0.00025429446,0.0000028336315],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008663293,0.00053857575,0.9938329,0.0021575294,0.000051289077,0.000044403987,0.00064251415,0.0000021527953,0.002223125,0.0000037696952,0.00008393496,0.0003332069],"study_design_scores_gemma":[0.0026644235,0.005171929,0.9857864,0.004994694,0.0004931418,0.0000903643,0.00046664831,0.00012776064,0.000008773511,0.00002449899,0.000027352879,0.00014402339],"about_ca_topic_score_codex":0.00029239542,"about_ca_topic_score_gemma":0.0000375718,"teacher_disagreement_score":0.009271046,"about_ca_system_score_codex":0.00017466414,"about_ca_system_score_gemma":0.00014810349,"threshold_uncertainty_score":0.69912934},"labels":[],"label_agreement":null},{"id":"W2106383972","doi":"10.1093/jac/dki401","title":"Molecular characteristics of pbp1a and pbp2b in clinical Streptococcus pneumoniae isolates in Quebec, Canada","year":2005,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hôpital Notre-Dame","funders":"","keywords":"Penicillin binding proteins; Streptococcus pneumoniae; Penicillin; Microbiology; Penicillin resistance; Antibiotic resistance; Bacterial protein; Antibiotics; Biology; Gene; Genetics","score_opus":0.007582308345986661,"score_gpt":0.27384340206702057,"score_spread":0.2662610937210339,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106383972","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9903352,0.00008002568,0.000017441127,0.009224358,0.00014772998,0.00013838756,0.0000051682605,0.000002999443,0.000048659913],"genre_scores_gemma":[0.99594265,0.00064457074,0.000103970895,0.0030719356,0.00017093564,5.342158e-7,0.0000011314671,0.000016598924,0.00004768669],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99853104,0.000058283553,0.0010049449,0.00011618686,0.00011664589,0.00017289081],"domain_scores_gemma":[0.99922216,0.000058867692,0.00040577658,0.00011459317,0.0000907783,0.00010781088],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026922525,0.00012880293,0.0005682626,0.00019018551,0.0000158438,0.000011396052,0.00007418769,0.00012077158,0.000022246604],"category_scores_gemma":[0.00005688978,0.00010839023,0.00011421878,0.00016375215,0.00008064072,0.00008126004,0.000011314648,0.00042822328,5.097615e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014445267,0.00036107848,0.38115084,0.00003450999,0.00005560361,0.000138693,0.00012751327,0.00001819012,0.6092726,0.0000025116647,0.0006321154,0.008061906],"study_design_scores_gemma":[0.004822291,0.00033750365,0.910249,0.00043700894,0.000039636245,0.00020009007,0.00005451352,0.00012409173,0.058598153,0.000004279666,0.024962813,0.0001706492],"about_ca_topic_score_codex":0.015548823,"about_ca_topic_score_gemma":0.18500774,"teacher_disagreement_score":0.55067444,"about_ca_system_score_codex":0.00012693844,"about_ca_system_score_gemma":0.0007192926,"threshold_uncertainty_score":0.99100673},"labels":[],"label_agreement":null},{"id":"W2106559589","doi":"10.1086/323339","title":"Dynamics of Penicillin‐Susceptible Clones in Invasive Pneumococcal Disease","year":2001,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":104,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Penicillin; Serotype; Multilocus sequence typing; Virulence; clone (Java method); Microbiology; Biology; Typing; Bacteremia; Pneumococcal infections; Streptococcus pneumoniae; Virology; Pneumococcal disease; Antibiotics; Genotype; Genetics; Gene","score_opus":0.011343397626190493,"score_gpt":0.2681412310904109,"score_spread":0.25679783346422036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106559589","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962267,0.00065319974,0.00010594176,0.0017503692,0.00024438207,0.00022897971,0.000019375175,0.00002094826,0.0007500695],"genre_scores_gemma":[0.9975389,0.0018462791,0.00000220522,0.00028872775,0.00022209101,0.0000051840575,0.0000041299345,0.000018416422,0.00007406687],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99868536,0.000163951,0.0005605747,0.00008833638,0.00029694248,0.00020483576],"domain_scores_gemma":[0.99844766,0.0003248971,0.0003801125,0.00024189647,0.00031247403,0.0002929851],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023792763,0.0001512961,0.0003855518,0.00034353283,0.00009920437,0.000011442384,0.00013173612,0.000051566167,0.00011949778],"category_scores_gemma":[0.00057254476,0.00009498771,0.00027815014,0.0004747787,0.00019963387,0.00011830823,0.00003659105,0.0002989858,0.00001133327],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00049929635,0.00089710375,0.9849636,0.00010060401,0.000114112154,0.00028024203,0.00014921333,0.0016976079,0.010529033,0.00018551272,0.00009411124,0.000489589],"study_design_scores_gemma":[0.0021906095,0.0012421525,0.9913933,0.00036322145,0.00071493624,0.0009411225,0.0004491016,0.00023743445,0.00027618068,0.0017777492,0.00028099786,0.00013316284],"about_ca_topic_score_codex":0.00004948934,"about_ca_topic_score_gemma":0.00031948296,"teacher_disagreement_score":0.010252852,"about_ca_system_score_codex":0.0001706536,"about_ca_system_score_gemma":0.000508256,"threshold_uncertainty_score":0.38734862},"labels":[],"label_agreement":null},{"id":"W2107233136","doi":"","title":"Vaccin pneumococcique conjugué : état des lieux 4 ans après impact de la vaccination sur les infections invasives (méningites, septicémies)","year":2005,"lang":"fr","type":"article","venue":"MTP. Médecine thérapeutique pédiatrie","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Humanities; Gynecology; Art","score_opus":0.025899480137128693,"score_gpt":0.30941104275704984,"score_spread":0.28351156261992116,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107233136","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.923082,0.04383166,0.005259598,0.014256171,0.0011882308,0.0016972156,0.00027453012,0.00079910515,0.009611512],"genre_scores_gemma":[0.9562587,0.031037008,0.00046373432,0.0016199069,0.004002767,0.00026401723,0.000120249504,0.00025819812,0.0059754304],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9934506,0.0016557947,0.001428163,0.0010307584,0.00054171117,0.0018929716],"domain_scores_gemma":[0.9934262,0.0029064883,0.00060496165,0.0010083293,0.00090991665,0.0011440909],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0019150898,0.0011955217,0.0012577545,0.0011810319,0.0012642718,0.00036265384,0.00045176133,0.0013365569,0.0027801988],"category_scores_gemma":[0.0021624877,0.0011686755,0.0009770575,0.0019713468,0.0005176172,0.0012112729,0.00021317851,0.0021853193,0.00056814984],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018415134,0.004463194,0.76150596,0.00093485904,0.0012408291,0.00023503673,0.0020547626,0.007998916,0.081138425,0.0042095366,0.005432101,0.13060223],"study_design_scores_gemma":[0.0058014016,0.001767369,0.6541116,0.00077253487,0.0018251888,0.0015478992,0.00044934565,0.0019761198,0.00996709,0.0019844405,0.3185739,0.0012231219],"about_ca_topic_score_codex":0.00090683566,"about_ca_topic_score_gemma":0.0021551554,"teacher_disagreement_score":0.3131418,"about_ca_system_score_codex":0.0021236758,"about_ca_system_score_gemma":0.0022544733,"threshold_uncertainty_score":0.99995995},"labels":[],"label_agreement":null},{"id":"W2107273591","doi":"10.1086/430782","title":"Changing Trends in Antimicrobial‐Resistant Pneumococci: It’s Not All Bad News","year":2005,"lang":"en","type":"review","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Medicine; Antimicrobial; Streptococcus pneumoniae; Pneumococcal infections; Antibiotic resistance; Multiple drug resistance; Pneumococcal conjugate vaccine; Intensive care medicine; Microbiology; Drug resistance; Antibiotics; Biology","score_opus":0.11932909556654546,"score_gpt":0.4465189978236885,"score_spread":0.327189902257143,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107273591","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00092628313,0.98364615,0.000010772322,0.0020490128,0.0027602229,0.0017048983,0.00047935112,0.0007082878,0.007715008],"genre_scores_gemma":[0.0027329295,0.9831974,0.0000034072073,0.008658789,0.002727334,0.00027339222,0.0004479662,0.00016953274,0.0017892489],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99431473,0.0006594921,0.0025547256,0.0011821929,0.0003215372,0.0009673498],"domain_scores_gemma":[0.99641466,0.0008919563,0.0007342231,0.001007807,0.000105940635,0.00084539695],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005077379,0.00089798035,0.00398851,0.0018914512,0.00020587197,0.00009939476,0.00027734644,0.0009831744,0.0005613308],"category_scores_gemma":[0.0007872985,0.00072419725,0.0030758472,0.0016109571,0.00029922312,0.00013873255,0.00021163633,0.0015463481,0.00062388886],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021528014,0.002545212,0.005471418,0.003386822,0.00057065877,0.00045580743,0.000020660278,0.000004451146,0.0000060069747,0.000028903376,0.009555976,0.9779326],"study_design_scores_gemma":[0.001353263,0.0005451167,0.006239895,0.008367597,0.0038935768,0.00010575375,0.0000093246,0.0000049399273,3.8040957e-7,0.0000053973604,0.9787745,0.0007002809],"about_ca_topic_score_codex":0.000025921345,"about_ca_topic_score_gemma":0.00029833388,"teacher_disagreement_score":0.9772323,"about_ca_system_score_codex":0.00045768273,"about_ca_system_score_gemma":0.00074311724,"threshold_uncertainty_score":0.9995209},"labels":[],"label_agreement":null},{"id":"W2107579271","doi":"10.1128/iai.00748-07","title":"Duplicate Copies of<i>lic1</i>Direct the Addition of Multiple Phosphocholine Residues in the Lipopolysaccharide of<i>Haemophilus influenzae</i>","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"Medical Research Council","keywords":"Phosphocholine; Haemophilus influenzae; Heptose; Biology; Operon; Microbiology; Lipopolysaccharide; Mutant; Lipid A; Pasteurellaceae; Biochemistry; Gene; Immunology","score_opus":0.02311238773972732,"score_gpt":0.29106991588171155,"score_spread":0.26795752814198426,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107579271","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972004,0.00028375458,0.00006508733,0.00037323826,0.00011313971,0.00033776383,0.00002232897,0.000023748496,0.0015804813],"genre_scores_gemma":[0.9989049,0.0005639408,0.000010568131,0.00041850124,0.000047322592,0.000016387376,0.0000096303875,0.0000076091424,0.000021177764],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99901056,0.00014865468,0.00045762942,0.00009582005,0.00015994988,0.000127376],"domain_scores_gemma":[0.9986907,0.0005140752,0.00023990669,0.0003511917,0.00017296271,0.00003111961],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009952845,0.000107714775,0.00026344572,0.00016374307,0.00015031702,0.0000060731745,0.00007432944,0.00009112012,0.00002116266],"category_scores_gemma":[0.00043192,0.00006450556,0.00009957776,0.00042099686,0.0003308895,0.000086141175,0.000034970893,0.00032187824,0.0000018114796],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032823792,0.00056987506,0.50015813,0.00016545475,0.00008837473,0.0000024389753,0.002193052,0.00004912903,0.49001217,0.00038532127,0.00022219802,0.0058256187],"study_design_scores_gemma":[0.0008136327,0.00028899635,0.73105574,0.000106648535,0.000058476387,0.00005067238,0.00036271647,0.000021516655,0.26150444,0.00011551259,0.005563862,0.00005781234],"about_ca_topic_score_codex":0.004335244,"about_ca_topic_score_gemma":0.0012833072,"teacher_disagreement_score":0.2308976,"about_ca_system_score_codex":0.000021251037,"about_ca_system_score_gemma":0.00004215295,"threshold_uncertainty_score":0.6553621},"labels":[],"label_agreement":null},{"id":"W2107709676","doi":"10.1128/aac.46.9.3020-3025.2002","title":"Mutation in 23S rRNA Associated with Macrolide Resistance in <i>Neisseria gonorrhoeae</i>","year":2002,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":177,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Canada","funders":"British Columbia Centre for Disease Control; Virginia Commonwealth University; Pfizer","keywords":"23S ribosomal RNA; Neisseria gonorrhoeae; Microbiology; MTRR; Biology; Genetics; Allele; Gene","score_opus":0.012457619810252537,"score_gpt":0.23533393490041063,"score_spread":0.2228763150901581,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107709676","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99253654,0.000035338737,0.0000069873245,0.005059442,0.000044631815,0.00023361071,0.0000057425236,0.000028490915,0.0020492335],"genre_scores_gemma":[0.9881841,0.00053233193,0.000040475876,0.010054887,0.000029848074,0.000008157116,0.000011404809,0.00002101785,0.0011177724],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993177,0.00002844814,0.00019569426,0.00020551227,0.00004136197,0.00021127726],"domain_scores_gemma":[0.99974227,0.000015225027,0.0000636473,0.00010101927,0.000026456928,0.000051360003],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006857775,0.00012798564,0.00021342172,0.000117278505,0.0000573556,0.000022786386,0.00003453829,0.000087435124,0.00012404654],"category_scores_gemma":[0.000009966811,0.000105906525,0.000030278192,0.00034024956,0.000051127394,0.0000759745,0.000005280344,0.00014229461,0.000009449121],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032747674,0.0011833097,0.9091524,0.00007995237,0.0001054954,0.00018018203,0.0022312289,0.000022474134,0.07050822,0.0000294133,0.012387109,0.0037927458],"study_design_scores_gemma":[0.0064523616,0.00015994316,0.953995,0.00039573415,0.000021457936,0.00005640444,0.00004685821,0.00015430534,0.002412628,0.000030806998,0.036054075,0.00022042882],"about_ca_topic_score_codex":0.000045444172,"about_ca_topic_score_gemma":0.00086275424,"teacher_disagreement_score":0.068095595,"about_ca_system_score_codex":0.00005899353,"about_ca_system_score_gemma":0.000016077613,"threshold_uncertainty_score":0.43187428},"labels":[],"label_agreement":null},{"id":"W2107875432","doi":"10.1128/aac.49.11.4635-4640.2005","title":"Expression of the <i>mef</i> (E) Gene Encoding the Macrolide Efflux Pump Protein Increases in <i>Streptococcus pneumoniae</i> with Increasing Resistance to Macrolides","year":2005,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Canada; University of Manitoba; Manitoba Health; Health Sciences Centre","funders":"","keywords":"Efflux; Streptococcus pneumoniae; Microbiology; Gene; Ketolide; Bacterial protein; Biology; Streptococcaceae; Antibiotics; Genetics","score_opus":0.007978076718904195,"score_gpt":0.2388112592350502,"score_spread":0.230833182516146,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107875432","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.988108,0.00002950563,0.000018598164,0.010261716,0.000024757039,0.0010529003,0.00001644331,0.000026051566,0.00046205535],"genre_scores_gemma":[0.98654574,0.00013485238,0.0002066761,0.012555546,0.00013674962,0.00004905347,0.0000022688043,0.000031114192,0.0003380067],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987977,0.000107460495,0.0003220249,0.00029122055,0.00019097168,0.00029059738],"domain_scores_gemma":[0.9992992,0.000049935385,0.00014516467,0.000356697,0.000057234203,0.00009176358],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022447096,0.00021422467,0.0002928246,0.00007277888,0.00026312936,0.00003966459,0.00016659827,0.00007791773,0.00002542291],"category_scores_gemma":[0.000029959981,0.000113499555,0.00008283087,0.00035510815,0.00016694219,0.00008573021,0.00006464224,0.00020160027,0.000002909628],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022919904,0.00018013835,0.18874505,0.00004884363,0.000022640854,0.0000067051365,0.00033486594,0.000024609764,0.8090253,0.0000056464573,0.0006463021,0.0007307111],"study_design_scores_gemma":[0.0015224467,0.00007524287,0.1685867,0.00086273893,0.000027129421,0.00007175263,0.00005010748,0.000006910394,0.8009065,0.000007030299,0.027739093,0.0001443496],"about_ca_topic_score_codex":0.0001439802,"about_ca_topic_score_gemma":0.00023249163,"teacher_disagreement_score":0.027092792,"about_ca_system_score_codex":0.000050645493,"about_ca_system_score_gemma":0.000075334654,"threshold_uncertainty_score":0.46283776},"labels":[],"label_agreement":null},{"id":"W2108631035","doi":"10.1186/1752-1947-7-114","title":"A lactating woman presenting with puerperal pneumococcal mastitis: a case report","year":2013,"lang":"en","type":"article","venue":"Journal of Medical Case Reports","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Jewish General Hospital","funders":"","keywords":"Medicine; Mastitis; Streptococcus pneumoniae; Pneumococcal disease; Pneumococcal infections; Disease; Pediatrics; Intensive care medicine; Immunology; Internal medicine; Pathology; Microbiology; Antibiotics","score_opus":0.01615783716434661,"score_gpt":0.30154661954344486,"score_spread":0.28538878237909826,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108631035","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99223334,0.000090569956,0.00034450277,0.004933295,0.0004750651,0.00030062636,5.183905e-7,0.000042424785,0.0015796502],"genre_scores_gemma":[0.9975957,0.000008976216,0.0004751166,0.0005086521,0.001052087,0.000022185444,0.0000015142529,0.000030706262,0.00030503268],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.99636424,0.00009684041,0.0014629478,0.00024399724,0.0014578286,0.00037416723],"domain_scores_gemma":[0.99663985,0.0001530203,0.0011217293,0.00030907904,0.00060902274,0.0011672786],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014541759,0.00019589571,0.0005384121,0.00022489589,0.00021352865,0.00007369079,0.000041522766,0.00020196443,0.00088211364],"category_scores_gemma":[0.0025801938,0.00012346233,0.00022484052,0.0002494753,0.0001618069,0.00029925862,0.0000557044,0.0010560607,0.0000072619364],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013812038,0.00021750818,0.059856683,0.00008978264,0.00015922973,0.93594205,0.00022506312,0.0000070651927,0.0011735177,0.0000028679478,0.00078427175,0.001528166],"study_design_scores_gemma":[0.0007659332,0.00043136074,0.009597638,0.00044090347,0.0002254759,0.9834985,0.00075104827,0.00025238382,0.00012681994,0.000024277848,0.0037514698,0.0001341735],"about_ca_topic_score_codex":0.0003441812,"about_ca_topic_score_gemma":0.00007334215,"teacher_disagreement_score":0.050259046,"about_ca_system_score_codex":0.0000946204,"about_ca_system_score_gemma":0.00091895787,"threshold_uncertainty_score":0.9658526},"labels":[],"label_agreement":null},{"id":"W2108680897","doi":"10.1185/030079904125004376","title":"Nursing home-acquired pneumonia: an emergency department treatment algorithm","year":2004,"lang":"en","type":"review","venue":"Current Medical Research and Opinion","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Hamilton Health Sciences","funders":"","keywords":"Medicine; Emergency department; Pneumonia; Emergency medicine; Intensive care medicine; Algorithm; Medical emergency; Nursing; Internal medicine","score_opus":0.23041544399512015,"score_gpt":0.533487597536195,"score_spread":0.30307215354107486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108680897","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00006460942,0.9939641,0.00024597725,0.00046908177,0.0030605604,0.0017893495,0.00009095752,0.00009271252,0.00022266104],"genre_scores_gemma":[0.00003344976,0.99607015,0.00003182767,0.000007884422,0.0020146964,0.00055994606,0.0010868715,0.000063051004,0.000132128],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99499816,0.0005198499,0.0008150368,0.0008776579,0.0018123175,0.0009769604],"domain_scores_gemma":[0.99662596,0.00015991679,0.00012820789,0.00056511967,0.00021673135,0.0023040802],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008113372,0.0005259316,0.0014845202,0.000634846,0.0004990033,0.000051531504,0.00022155912,0.0005733827,0.00042458356],"category_scores_gemma":[0.00026507143,0.00034654708,0.0004115275,0.0006997823,0.0005354225,0.000102753955,0.0001002756,0.0010245624,0.0001540198],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011245254,0.0021778042,0.000025717258,0.0066944314,0.00012225576,0.00008729837,0.00006454237,1.9949084e-8,9.959531e-7,0.00014163258,0.000452585,0.9902215],"study_design_scores_gemma":[0.0009546312,0.0032788594,0.00013825203,0.041426506,0.0002133393,0.00038630862,0.00002306875,0.000031779753,8.5341907e-7,0.0002917342,0.9529691,0.0002855939],"about_ca_topic_score_codex":0.000020149126,"about_ca_topic_score_gemma":0.0000048946445,"teacher_disagreement_score":0.9899359,"about_ca_system_score_codex":0.0012230554,"about_ca_system_score_gemma":0.003281316,"threshold_uncertainty_score":0.9998987},"labels":[],"label_agreement":null},{"id":"W2108707230","doi":"10.1016/s0732-8893(02)00522-9","title":"Antimicrobial susceptibility of community-acquired respiratory tract pathogens in North America in 1999-2000: findings of the PROTEKT surveillance study","year":2003,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":81,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre","funders":"","keywords":"Moraxella catarrhalis; Erythromycin; Penicillin; Microbiology; Telithromycin; Levofloxacin; Streptococcus pneumoniae; Respiratory tract infections; Antimicrobial; Moxifloxacin; Ampicillin; Ciprofloxacin; Amp resistance; Streptococcus pyogenes; Haemophilus influenzae; Antibiotic resistance; Biology; Medicine; Antibiotics; Staphylococcus aureus; Respiratory system; Internal medicine; Bacteria","score_opus":0.012241746379521178,"score_gpt":0.2528531989500555,"score_spread":0.2406114525705343,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108707230","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978116,0.00022721276,0.0000031430059,0.000059741586,0.00013272528,0.0014899647,0.0001946998,0.000016650934,0.000064239626],"genre_scores_gemma":[0.99935716,0.000054097123,0.0000016116348,0.00048195402,0.000010363031,0.000057284265,0.000021569844,0.000012274406,0.0000036554486],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99734163,0.0015783368,0.0005435016,0.00023277715,0.000048772177,0.0002549502],"domain_scores_gemma":[0.9983797,0.0007987892,0.0001745957,0.00046573003,0.00008573365,0.000095447955],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000545331,0.00019192442,0.0005007108,0.00020421135,0.00014163413,0.0000043532395,0.00009961737,0.00011029994,0.00003297142],"category_scores_gemma":[0.0028924474,0.00014748103,0.000110927416,0.0006244794,0.00062578154,0.000041753032,0.0000584103,0.00038219593,0.000002467867],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009952767,0.0046250047,0.9232305,0.00015204868,0.000029408453,0.000025616277,0.0007854948,0.00005629097,0.07085382,0.0000053300155,0.00003666151,0.000100269506],"study_design_scores_gemma":[0.0022559538,0.0007315166,0.9950893,0.000073032825,0.000055588807,0.000026167656,0.00020851356,9.685092e-7,0.0010149664,0.000013946223,0.00040156613,0.00012848113],"about_ca_topic_score_codex":0.00033082278,"about_ca_topic_score_gemma":0.0042048823,"teacher_disagreement_score":0.07185878,"about_ca_system_score_codex":0.000078802484,"about_ca_system_score_gemma":0.00033206804,"threshold_uncertainty_score":0.6014102},"labels":[],"label_agreement":null},{"id":"W2108802663","doi":"10.1016/s0924-8579(02)00127-9","title":"Clinical aspects and cost of invasive Streptococcus pneumoniae infections in children: resistant vs. susceptible strains","year":2002,"lang":"en","type":"article","venue":"International Journal of Antimicrobial Agents","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital; Montreal Children's Hospital; Université de Montréal; Hôpital Maisonneuve-Rosemont; McGill University","funders":"","keywords":"Streptococcus pneumoniae; Medicine; Penicillin; Antibiotics; Population; Internal medicine; Pediatrics; Mortality rate; Pneumococcal infections; Microbiology; Biology; Environmental health","score_opus":0.03064476935735446,"score_gpt":0.3231565121278926,"score_spread":0.29251174277053815,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108802663","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99636936,0.000032823384,0.000027699465,0.0016832476,0.0006647014,0.00026959786,0.000059942413,0.000008540518,0.00088406913],"genre_scores_gemma":[0.99792117,0.001007332,0.000044944387,0.0005953067,0.000332563,0.0000018166996,0.000007205196,0.000013403013,0.00007625899],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983789,0.00008643896,0.00090886094,0.00016266243,0.00030363456,0.00015952275],"domain_scores_gemma":[0.9987346,0.000078958525,0.00049771636,0.000108705346,0.00043281924,0.00014721659],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025580986,0.00013361382,0.0003710319,0.0005076661,0.00004801376,0.000030841056,0.000155552,0.000110181514,0.00023588534],"category_scores_gemma":[0.0002777792,0.00011684959,0.0002181616,0.00019019523,0.00017495253,0.00017289484,0.000060496368,0.0004259724,0.000013293652],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000715976,0.0013570527,0.8933983,0.000015735954,0.0003984172,0.00023356854,0.00014907103,0.00007584525,0.10050882,0.000048408434,0.0024380528,0.0013051445],"study_design_scores_gemma":[0.0042016157,0.0011151396,0.98768455,0.0005011311,0.0000983003,0.0015071116,0.000046324672,0.00003694133,0.0028171325,0.0000325348,0.001837968,0.0001212682],"about_ca_topic_score_codex":0.00004298192,"about_ca_topic_score_gemma":0.00012513436,"teacher_disagreement_score":0.097691685,"about_ca_system_score_codex":0.00010110823,"about_ca_system_score_gemma":0.0001428808,"threshold_uncertainty_score":0.47649878},"labels":[],"label_agreement":null},{"id":"W2109321313","doi":"10.1128/jcm.00137-13","title":"Systematic Review and Meta-Analysis of a Urine-Based Pneumococcal Antigen Test for Diagnosis of Community-Acquired Pneumonia Caused by Streptococcus pneumoniae","year":2013,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":169,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"McGill University Health Centre","keywords":"Community-acquired pneumonia; Medicine; Streptococcus pneumoniae; Internal medicine; Pneumonia; Meta-analysis; Blood culture; Gold standard (test); Gastroenterology; Intensive care medicine; Antibiotics; Microbiology; Biology","score_opus":0.164606559348009,"score_gpt":0.44396781930571677,"score_spread":0.2793612599577078,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109321313","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0046445252,0.9872067,0.00002908848,0.0008505011,0.00014938618,0.00499991,0.0021005794,0.000013356275,0.000005985445],"genre_scores_gemma":[0.001734837,0.9962148,0.000053676147,0.0009314003,0.00006117736,0.0006402017,0.00021999842,0.00006764217,0.00007624],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.98532087,0.0038678327,0.009876992,0.00037584393,0.00016614968,0.00039230037],"domain_scores_gemma":[0.9687609,0.017088415,0.011349632,0.0011106586,0.0013173941,0.00037300756],"candidate_categories":["metaepi_narrow","metaepi_broad"],"consensus_categories":["metaepi_broad"],"category_scores_codex":[0.0048298803,0.000743735,0.028155746,0.00087365723,0.0001110599,0.00001677843,0.00064731296,0.0009943977,0.00017011362],"category_scores_gemma":[0.0073663318,0.00043323758,0.011183343,0.0009209862,0.0007105631,0.000065901186,0.00013352849,0.0012970367,0.0000061038772],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015101145,0.0025117383,0.0019206166,0.71950376,0.26949292,0.000013390679,0.000019177696,0.0000011221722,0.0041207206,0.0000022166603,0.0011089505,0.0012903098],"study_design_scores_gemma":[0.0009374582,0.003349443,0.00030484988,0.03493707,0.87424135,0.000148909,0.000013680803,0.0000019316617,0.00005540672,0.0000030938143,0.085680865,0.00032596407],"about_ca_topic_score_codex":0.000012723961,"about_ca_topic_score_gemma":0.000014691015,"teacher_disagreement_score":0.6845667,"about_ca_system_score_codex":0.0000649296,"about_ca_system_score_gemma":0.00070375623,"threshold_uncertainty_score":0.99981195},"labels":[],"label_agreement":null},{"id":"W2109626958","doi":"10.1016/s0140-6736(12)61266-5","title":"Acute pneumonia and the cardiovascular system","year":2013,"lang":"en","type":"review","venue":"The Lancet","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":413,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; University of Ottawa","funders":"","keywords":"Medicine; Pneumonia; Intensive care medicine; Disease; Complication; Internal medicine","score_opus":0.055176375622555326,"score_gpt":0.31618850730183645,"score_spread":0.2610121316792811,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109626958","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000029724306,0.99082243,0.000009297642,0.0011392555,0.0003700758,0.0015457777,0.000029888157,0.00010611328,0.00594742],"genre_scores_gemma":[0.00009491652,0.9963431,0.000005178267,0.00034502754,0.0019155856,0.00044132082,0.000009121616,0.00003654668,0.0008092045],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99863654,0.00040910055,0.0002805154,0.00021759757,0.00021307718,0.000243163],"domain_scores_gemma":[0.99826723,0.00016703711,0.00012498071,0.0013349243,0.000038767448,0.000067081906],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006431322,0.00026138642,0.0026030173,0.000042939504,0.00022797492,0.00005276694,0.00026346193,0.0001681762,0.000009998631],"category_scores_gemma":[0.00003162757,0.0000917513,0.00087131676,0.00016733707,0.00024468268,0.000021350641,0.00009541515,0.000584746,0.00034395186],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019747904,0.000018575054,0.000020843068,0.042312693,0.013035297,0.00012641847,0.0001552819,8.957934e-7,0.000007044821,0.0038416025,0.011659513,0.9288021],"study_design_scores_gemma":[0.0007853949,0.00001915638,0.000027188604,0.0042460784,0.009298765,0.0023420707,0.000016369124,0.0000059614017,1.7237393e-7,0.000009391039,0.9831423,0.000107115775],"about_ca_topic_score_codex":0.000023282133,"about_ca_topic_score_gemma":8.1622443e-7,"teacher_disagreement_score":0.9714828,"about_ca_system_score_codex":0.00005416005,"about_ca_system_score_gemma":0.00009036456,"threshold_uncertainty_score":0.442092},"labels":[],"label_agreement":null},{"id":"W2109814818","doi":"10.1016/j.ijantimicag.2013.06.003","title":"Telavancin versus vancomycin for bacteraemic hospital-acquired pneumonia","year":2013,"lang":"en","type":"letter","venue":"International Journal of Antimicrobial Agents","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Astellas Pharma","keywords":"Vancomycin; Pneumonia; Medicine; Intensive care medicine; Internal medicine; Staphylococcus aureus; Biology; Bacteria","score_opus":0.026420619114523845,"score_gpt":0.3051952009870726,"score_spread":0.2787745818725487,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109814818","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3289002,0.000054718035,0.0002800079,0.62777096,0.040914215,0.0009760965,0.0004717927,0.000050236442,0.0005817525],"genre_scores_gemma":[0.24085322,0.000640283,0.0012778135,0.70081645,0.047082964,0.000055301494,0.0011727611,0.000311749,0.0077894777],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99752563,0.00005514314,0.001044136,0.0003110504,0.00066546624,0.0003985803],"domain_scores_gemma":[0.9966428,0.00016680571,0.0011473228,0.00022787595,0.0016659098,0.00014928138],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00014445781,0.00040869773,0.0007347774,0.00062217837,0.000093354516,0.00012583761,0.00060586573,0.00061091065,0.0005043951],"category_scores_gemma":[0.00020783972,0.0003470082,0.0008947141,0.00010252286,0.00008040828,0.00029500158,0.00008673016,0.0010127596,0.0001838513],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000347119,0.00024283344,0.0005596728,0.00009953891,0.001528484,0.0012310522,0.000057118894,0.00001006083,0.04526382,0.0000015946433,0.94954896,0.0011097597],"study_design_scores_gemma":[0.0052172714,0.0010799374,0.0019999836,0.00077200937,0.00043440805,0.0010631898,0.0000072901285,0.000019170233,0.002839509,0.000021233736,0.98621225,0.00033377315],"about_ca_topic_score_codex":0.000010422533,"about_ca_topic_score_gemma":0.0000051707793,"teacher_disagreement_score":0.088046975,"about_ca_system_score_codex":0.0003651648,"about_ca_system_score_gemma":0.0004102281,"threshold_uncertainty_score":0.9998982},"labels":[],"label_agreement":null},{"id":"W2109977008","doi":"10.1517/13543784.9.2.383","title":"A review of clinical trials with fluoroquinolones with an emphasis on new agents","year":2000,"lang":"en","type":"review","venue":"Expert Opinion on Investigational Drugs","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal University Hospital","funders":"","keywords":"Medicine; Intensive care medicine; Antimicrobial; Broad spectrum; Antibiotics; Respiratory tract infections; Clinical trial; Anti-Infective Agents; Pharmacology; Internal medicine; Respiratory system; Biology; Microbiology","score_opus":0.3822515389438884,"score_gpt":0.5327650230802695,"score_spread":0.1505134841363811,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109977008","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000027985545,0.9925714,0.00000688361,0.0025452864,0.00052057876,0.0021826855,0.0000986337,0.00008788407,0.001958631],"genre_scores_gemma":[0.0000016993221,0.9827393,0.0005105541,0.012986222,0.001789727,0.00036072286,0.0010931115,0.00008899628,0.00042964212],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9938359,0.0017285879,0.0024537353,0.0007759952,0.0009451252,0.00026063801],"domain_scores_gemma":[0.9957016,0.0011162304,0.0014181564,0.0008253726,0.00019747767,0.0007411763],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0015585958,0.00062524935,0.0040051676,0.00037029726,0.0001247688,0.000020611704,0.00023553197,0.00043901496,0.00068430457],"category_scores_gemma":[0.0010621297,0.00035435756,0.0008354257,0.0006022743,0.00037598453,0.000112221154,0.000019586134,0.0006777116,0.00017537919],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027666643,0.00064049143,0.000024348596,0.014206844,0.00064369146,0.000011150307,0.00009383323,0.0000029810067,5.440432e-7,0.00062420097,0.049982492,0.9334928],"study_design_scores_gemma":[0.0011433293,0.0027092125,0.000054013744,0.2398928,0.00024215614,0.0000991216,0.000007640718,0.000001913662,0.0000037275308,0.000021252425,0.7555388,0.00028599353],"about_ca_topic_score_codex":0.000025676793,"about_ca_topic_score_gemma":8.8204126e-7,"teacher_disagreement_score":0.93320674,"about_ca_system_score_codex":0.000099378296,"about_ca_system_score_gemma":0.0035764086,"threshold_uncertainty_score":0.99989086},"labels":[],"label_agreement":null},{"id":"W2110155476","doi":"10.1503/cmaj.080734","title":"Efficacy of pneumococcal vaccination in adults: a meta-analysis","year":2009,"lang":"en","type":"review","venue":"Canadian Medical Association Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":414,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"World Health Organization","keywords":"Medicine; Pneumonia; Blinding; Clinical trial; Meta-analysis; Internal medicine; Pneumococcal pneumonia; Relative risk; Confidence interval; Pneumococcal vaccine; Vaccination; Pneumococcal polysaccharide vaccine; Streptococcus pneumoniae; Immunology; Pneumococcal disease; Microbiology; Antibiotics; Biology","score_opus":0.0379574470480077,"score_gpt":0.34124788388550803,"score_spread":0.30329043683750034,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110155476","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00011140683,0.9922438,0.000015889504,0.0047273673,0.0002503201,0.00057956815,0.00006960072,0.000015286283,0.0019867113],"genre_scores_gemma":[0.0006235793,0.9969209,0.000014923635,0.0013237217,0.00067686784,0.000031208223,0.00008310755,0.000025170408,0.00030056018],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9955335,0.00062990835,0.0016898452,0.0002770766,0.0014070934,0.00046257421],"domain_scores_gemma":[0.9963172,0.00043950614,0.0010733384,0.00022382766,0.00048243479,0.0014636624],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0021303392,0.0003077563,0.0036587412,0.0025021343,0.00010653224,0.00003416338,0.00022398078,0.0012400562,0.0049928357],"category_scores_gemma":[0.0028027454,0.00022507143,0.0035981466,0.002390151,0.000019447434,0.000075629425,0.000010461667,0.0021911873,0.00007106591],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00000757539,0.0002727453,0.0010142413,0.0011986278,0.08304046,0.0007933445,0.00009614955,0.000006279648,1.3985765e-7,0.00004694371,0.0023314594,0.91119206],"study_design_scores_gemma":[0.0007226766,0.000089725174,0.006490714,0.0009407399,0.14440726,0.00037748643,0.000014554334,0.000014413691,4.8896943e-8,0.000008187385,0.8467699,0.00016425528],"about_ca_topic_score_codex":0.0006945142,"about_ca_topic_score_gemma":0.019689448,"teacher_disagreement_score":0.9110278,"about_ca_system_score_codex":0.0020842275,"about_ca_system_score_gemma":0.0070987744,"threshold_uncertainty_score":0.99853003},"labels":[],"label_agreement":null},{"id":"W2110304206","doi":"10.1016/s1474-4422(06)70409-4","title":"Pneumococcal meningitis in adults: new approaches to management and prevention","year":2006,"lang":"en","type":"review","venue":"The Lancet Neurology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":148,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Meningitis; Medicine; Vaccination; Intensive care medicine; Streptococcus pneumoniae; Antibiotics; Haemophilus influenzae; Pediatrics; Dexamethasone; Incidence (geometry); Disease; Immunology; Internal medicine; Biology; Microbiology","score_opus":0.17594824841377635,"score_gpt":0.33936359285769685,"score_spread":0.1634153444439205,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110304206","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0026474956,0.97883284,0.00007447102,0.007868801,0.00030046652,0.0025306756,0.000010770191,0.00008950043,0.007644999],"genre_scores_gemma":[0.00020500885,0.9962942,0.00005821726,0.0007637262,0.0007870826,0.00030924304,0.000033690638,0.00003584176,0.0015129736],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99869967,0.00022978373,0.000327987,0.00036316525,0.000084487365,0.0002949],"domain_scores_gemma":[0.9993857,0.000070483395,0.00009952557,0.0003623656,0.000004007901,0.00007790377],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016897182,0.00022351074,0.001030826,0.00021168849,0.0000468641,0.000012296761,0.00013463148,0.00018619679,0.000011575468],"category_scores_gemma":[0.000013085778,0.00014261906,0.00012331783,0.00026844142,0.000050530663,0.000017524284,0.00011709733,0.000505045,0.00004501417],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006628819,0.00006905197,0.0003763017,0.005496553,0.00009356313,0.00018923351,0.000051681207,0.0000062576855,0.0000020327632,0.0010521292,0.0025232807,0.9900736],"study_design_scores_gemma":[0.000594461,0.00036778903,0.0035931882,0.001657636,0.0003377624,0.000389884,0.0000019303368,0.0000039146585,2.0808528e-7,0.0002875306,0.99265313,0.00011253878],"about_ca_topic_score_codex":0.00002242069,"about_ca_topic_score_gemma":0.00007796932,"teacher_disagreement_score":0.9901299,"about_ca_system_score_codex":0.000022574326,"about_ca_system_score_gemma":0.00004663706,"threshold_uncertainty_score":0.5815836},"labels":[],"label_agreement":null},{"id":"W2110445852","doi":"10.1097/inf.0b013e31818bfeb4","title":"A New Twist on an Old Problem","year":2008,"lang":"en","type":"letter","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University; SickKids Foundation; Toronto General Hospital; University of Toronto; University Health Network; Hospital for Sick Children; Ministry of Health and Long Term Care; Mount Sinai Hospital","funders":"","keywords":"Medicine; Meningitis; Ceftriaxone; Glasgow Coma Scale; Streptococcus pneumoniae; Lumbar puncture; Septic shock; Pneumonia; Brain abscess; Pediatrics; Surgery; Internal medicine; Sepsis; Antibiotics; Abscess; Cerebrospinal fluid; Microbiology","score_opus":0.014208076864459268,"score_gpt":0.2581980072027785,"score_spread":0.24398993033831926,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110445852","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.18274124,0.0011392272,0.00029961386,0.79037017,0.005672667,0.002106848,0.00012478734,0.0007659541,0.01677952],"genre_scores_gemma":[0.019495318,0.0033144988,0.0000366387,0.81866,0.14232045,0.000073064424,0.00007281771,0.00024212919,0.01578508],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99681765,0.00036323935,0.00063196704,0.00044491535,0.001001653,0.0007405871],"domain_scores_gemma":[0.99712527,0.00018949779,0.0005458614,0.0008150639,0.00025683068,0.0010674581],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00026620875,0.0005903955,0.0005770538,0.000755522,0.001155394,0.00018408021,0.00031967735,0.00055604626,0.00058732624],"category_scores_gemma":[0.00017002376,0.0003677997,0.0007439721,0.0005765015,0.000099662946,0.00015184276,0.00005010978,0.006147222,0.0006103742],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007859832,0.00031080455,0.049765803,0.00012701056,0.00019030856,0.004308471,0.00012373709,0.000098889366,0.0000065802924,0.000010342448,0.9443838,0.00059564627],"study_design_scores_gemma":[0.0022060922,0.0015946622,0.027426714,0.00010945365,0.0033174104,0.021797325,0.0000082539955,0.000018106946,0.000001003708,0.0011988453,0.9416674,0.0006547449],"about_ca_topic_score_codex":0.000058369504,"about_ca_topic_score_gemma":0.0000045718994,"teacher_disagreement_score":0.16324593,"about_ca_system_score_codex":0.00041363112,"about_ca_system_score_gemma":0.0025705374,"threshold_uncertainty_score":0.9998774},"labels":[],"label_agreement":null},{"id":"W2110540916","doi":"10.4021//jmc.v4i1.843","title":"Severe Pneumonia Caused by Streptococcus Pneumoniae and Haemophilus Influenzae Coinfection in an Elderly Patient: A Case Report","year":2012,"lang":"en","type":"article","venue":"Journal of Medical Cases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Meropenem; Streptococcus pneumoniae; Sputum; Pneumonia; Ampicillin; Respiratory distress; Haemophilus influenzae; Coinfection; Sputum culture; Bacterial pneumonia; Internal medicine; Microbiology; Antibiotics; Surgery; Immunology; Tuberculosis; Pathology; Antibiotic resistance","score_opus":0.025068353184431846,"score_gpt":0.31895542780497993,"score_spread":0.2938870746205481,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110540916","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996371,0.0008411686,0.000016275842,0.0018328782,0.0005331775,0.00026274452,0.0000134722495,0.000028785265,0.0001005469],"genre_scores_gemma":[0.9985139,0.00010929637,0.000008256003,0.00081823656,0.00048597914,0.000012944201,0.0000059910835,0.000023917833,0.00002150711],"study_design_codex":"observational","study_design_gemma":"case_report","domain_scores_codex":[0.9973898,0.00019611687,0.0009705477,0.0001869338,0.0008812615,0.00037533557],"domain_scores_gemma":[0.9976766,0.00023920815,0.0004645476,0.00022305832,0.00021000871,0.0011865688],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00089761865,0.00021261688,0.00050886336,0.00031944018,0.0001351459,0.000035177614,0.00006200444,0.00031020903,0.00013960226],"category_scores_gemma":[0.0013965168,0.00015995934,0.00012041956,0.00026991262,0.00015097285,0.0005144475,0.00004070636,0.0008851915,0.000004497214],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007271517,0.0013243743,0.658243,0.00009860129,0.00008726026,0.3046238,0.0008346698,0.0000068810596,0.009747247,0.000008787592,0.0012874397,0.023665225],"study_design_scores_gemma":[0.0024926877,0.0037855078,0.13450474,0.0003474939,0.00020192756,0.837519,0.00084169983,0.00005350367,0.00046001314,0.000014810893,0.019547014,0.00023160645],"about_ca_topic_score_codex":0.00015712359,"about_ca_topic_score_gemma":0.00028910208,"teacher_disagreement_score":0.5328952,"about_ca_system_score_codex":0.00015479865,"about_ca_system_score_gemma":0.0003392994,"threshold_uncertainty_score":0.6522953},"labels":[],"label_agreement":null},{"id":"W2110573889","doi":"10.1093/infdis/jir730","title":"Impact of More Than a Decade of Pneumococcal Conjugate Vaccine Use on Carriage and Invasive Potential in Native American Communities","year":2011,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":101,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; Wellcome Trust","keywords":"Carriage; Medicine; Pneumococcal conjugate vaccine; Pneumococcal disease; Virology; Native american; Streptococcus pneumoniae; Microbiology; Biology; Antibiotics; Pathology","score_opus":0.022804365654640227,"score_gpt":0.2970665431883264,"score_spread":0.2742621775336862,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110573889","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99938977,0.00011577997,0.000009627212,0.000061462684,0.000050333478,0.00019252508,0.0000547185,0.000007913933,0.00011786906],"genre_scores_gemma":[0.99927074,0.0005757022,0.0000019113572,0.000085612555,0.000044415887,0.000002892715,0.0000013100816,0.0000133365365,0.0000040862806],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99893254,0.00030367236,0.0004081184,0.000050798655,0.00017094218,0.00013394265],"domain_scores_gemma":[0.99839115,0.00041687163,0.0005732522,0.00017642582,0.00030251956,0.0001397559],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015402971,0.00014234232,0.00047711324,0.0003714513,0.00007063828,0.0000066937373,0.00008787759,0.000034455337,0.000026478605],"category_scores_gemma":[0.00027651436,0.000082014536,0.00020673621,0.00023606257,0.0003883668,0.00013505419,0.000039235954,0.00030341072,3.8210771e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001215346,0.0007766925,0.96878195,0.000041659452,0.00046042196,0.000055071843,0.0049853283,0.00025712972,0.023210209,0.000015583755,0.00001725288,0.00018335717],"study_design_scores_gemma":[0.0018558986,0.0052608545,0.9858703,0.00028740003,0.00042762273,0.000343909,0.0031651591,0.000019981813,0.0025940735,0.000101925245,0.000001815616,0.000071045455],"about_ca_topic_score_codex":0.0030538735,"about_ca_topic_score_gemma":0.00045633203,"teacher_disagreement_score":0.020616136,"about_ca_system_score_codex":0.0000696314,"about_ca_system_score_gemma":0.00021682597,"threshold_uncertainty_score":0.46165636},"labels":[],"label_agreement":null},{"id":"W2112075440","doi":"10.1016/j.vaccine.2009.05.061","title":"Cost-effectiveness of pneumococcal polysaccharide vaccination in adults: A systematic review of conclusions and assumptions","year":2009,"lang":"en","type":"review","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":67,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"TransCanada (Canada)","funders":"Merck","keywords":"Pneumococcal polysaccharide vaccine; Vaccination; Streptococcus pneumoniae; Medicine; Pneumococcal infections; Case fatality rate; Pneumococcal vaccine; Systematic review; Cost effectiveness; Pneumococcal disease; Incidence (geometry); Intensive care medicine; Immunology; Vaccine efficacy; MEDLINE; Epidemiology; Internal medicine; Biology; Microbiology; Risk analysis (engineering)","score_opus":0.04211196310542442,"score_gpt":0.37719777586267084,"score_spread":0.3350858127572464,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112075440","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00044433807,0.99070555,0.000023581948,0.00009262274,0.00008184037,0.008430523,0.00008287774,0.00003191477,0.00010677465],"genre_scores_gemma":[0.0014734885,0.9974895,0.00001138946,0.0000774818,0.000033998036,0.0007532186,0.00010290967,0.000033085696,0.00002491957],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.9966731,0.0007315821,0.0018016637,0.00035110986,0.00023991078,0.00020264174],"domain_scores_gemma":[0.9973439,0.0007282986,0.0009724985,0.0005370209,0.00029123816,0.00012707408],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010497574,0.0003774576,0.0047573703,0.00075943576,0.000047640387,0.0000046568025,0.00012900855,0.00029323561,0.000043738048],"category_scores_gemma":[0.0010410731,0.00026707284,0.00048260513,0.001017334,0.000011659626,0.000073830626,0.000071599934,0.00042117707,0.000008505006],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014524445,0.00027808218,0.0002284472,0.96638304,0.00015420665,0.000014259367,0.000015542979,1.8316253e-7,0.00010269306,0.00006789385,0.00001034829,0.03273079],"study_design_scores_gemma":[0.001032606,0.00031050245,0.004072042,0.98580164,0.003745512,0.00023739682,0.000009786844,0.000007589655,0.000008497186,0.000009576399,0.0045684124,0.00019644726],"about_ca_topic_score_codex":0.000016945201,"about_ca_topic_score_gemma":0.000012790188,"teacher_disagreement_score":0.032534342,"about_ca_system_score_codex":0.00020344488,"about_ca_system_score_gemma":0.00032172157,"threshold_uncertainty_score":0.9999781},"labels":[],"label_agreement":null},{"id":"W2112373671","doi":"10.1345/aph.1h660","title":"Corticosteroid Treatment of Severe Community-Acquired Pneumonia","year":2007,"lang":"en","type":"review","venue":"Annals of Pharmacotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Fraser Health; Vancouver General Hospital; University of British Columbia","funders":"","keywords":"Medicine; Pneumonia; Placebo; Systemic inflammation; Randomized controlled trial; Community-acquired pneumonia; Internal medicine; Adjunctive treatment; Intensive care unit; Corticosteroid; Methylprednisolone; Observational study; Inflammation; Pathology","score_opus":0.3558266838690035,"score_gpt":0.5144629819180363,"score_spread":0.1586362980490328,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112373671","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0054897983,0.99142873,0.0000051384495,0.0001364675,0.00027253566,0.001150819,0.00018243906,0.000052883668,0.0012811857],"genre_scores_gemma":[0.00084374734,0.99727434,0.000015414338,0.0007887685,0.00019331732,0.00006248584,0.00007668209,0.00008420625,0.000661019],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99770385,0.0003999316,0.0010867637,0.00020926485,0.0002715877,0.00032862733],"domain_scores_gemma":[0.99785024,0.00029471357,0.00076579815,0.00064362644,0.00023449419,0.00021110085],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00030016075,0.00047135408,0.0024077261,0.00044256108,0.000101316175,0.0000066156717,0.0001928798,0.0002717538,0.00030634756],"category_scores_gemma":[0.000012569487,0.00034083452,0.0011766698,0.00043021067,0.0001869814,0.00005030981,0.00001964345,0.00026411793,0.000030427249],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008722155,0.0020341284,0.00008712638,0.0077296793,0.0017934236,0.00003376893,0.00028620058,6.304238e-7,0.025187327,0.0000046977398,0.0004643155,0.9622915],"study_design_scores_gemma":[0.0012550643,0.0022609471,0.000080728205,0.004083264,0.0010382046,0.0002039417,0.000024849009,7.445968e-7,0.008364884,0.0000063581374,0.98244303,0.00023799343],"about_ca_topic_score_codex":0.000060684204,"about_ca_topic_score_gemma":0.0000049132796,"teacher_disagreement_score":0.9819787,"about_ca_system_score_codex":0.000061643106,"about_ca_system_score_gemma":0.0003026599,"threshold_uncertainty_score":0.9999044},"labels":[],"label_agreement":null},{"id":"W2112414994","doi":"10.1128/aac.46.12.4029-4034.2002","title":"Pharmacodynamic Modeling of Clarithromycin against Macrolide-Resistant [PCR-Positive <i>mef</i> (A) or <i>erm</i> (B)] <i>Streptococcus pneumoniae</i> Simulating Clinically Achievable Serum and Epithelial Lining Fluid Free-Drug Concentrations","year":2002,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Health Sciences Centre","funders":"","keywords":"Streptococcus pneumoniae; Clarithromycin; Pharmacodynamics; Microbiology; Drug resistance; Antibiotics; Antibacterial agent; Pharmacokinetics; Chemistry; Biology; Medicine; Pharmacology","score_opus":0.021141128270747378,"score_gpt":0.2826517465758686,"score_spread":0.26151061830512123,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112414994","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99260175,0.00007715348,0.0003681275,0.0048811,0.00019100454,0.0007542825,0.00040353648,0.00009256723,0.0006304661],"genre_scores_gemma":[0.97731674,0.003426432,0.00031459366,0.018318174,0.00022895094,0.000012698215,0.000031799882,0.000068768764,0.00028184487],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9976638,0.00010015637,0.00094009435,0.00056948763,0.00022943704,0.00049702486],"domain_scores_gemma":[0.99879754,0.00014252496,0.00030051038,0.00033552852,0.00017183073,0.00025208597],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00023712536,0.00039112166,0.00068956823,0.0001007937,0.00049722457,0.00007964932,0.00014619979,0.00020183921,0.000108902415],"category_scores_gemma":[0.000037273192,0.00032665048,0.00019503136,0.00024514121,0.0002655623,0.00020508899,0.00008653264,0.00043891245,0.0000050974963],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038357414,0.0005908233,0.025295816,0.00016119904,0.00033286546,0.00005531142,0.0011358893,0.0035812329,0.96321774,0.000012330422,0.001185906,0.004047295],"study_design_scores_gemma":[0.035987902,0.0020371054,0.010221341,0.0025817114,0.0011467873,0.00029259993,0.0010895504,0.7887959,0.14391522,0.00009257645,0.011839146,0.0020001759],"about_ca_topic_score_codex":0.000054590284,"about_ca_topic_score_gemma":0.00003317245,"teacher_disagreement_score":0.8193025,"about_ca_system_score_codex":0.00004265264,"about_ca_system_score_gemma":0.00008486286,"threshold_uncertainty_score":0.9999186},"labels":[],"label_agreement":null},{"id":"W2112823050","doi":"10.1093/infdis/jis290","title":"Interleukin 1 Receptor–Associated Kinase M Impairs Host Defense During Pneumococcal Pneumonia","year":2012,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Streptococcus pneumoniae; Biology; Pneumococcal pneumonia; Immunology; Microbiology; Immune system; Innate immune system; Pneumonia; Receptor; Pneumococcal infections; Medicine; Internal medicine; Antibiotics","score_opus":0.009495932675721915,"score_gpt":0.25522109937924503,"score_spread":0.24572516670352312,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112823050","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99632436,0.00085308705,0.000014638562,0.0005853444,0.0010722431,0.00023189686,0.00002261087,0.000110729015,0.000785082],"genre_scores_gemma":[0.9982729,0.00029737348,0.0000018020398,0.00031161399,0.0009252418,0.000008733644,0.0000034632424,0.000043011412,0.00013589169],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99810565,0.00034819733,0.0005828213,0.000102173944,0.0003703607,0.00049082626],"domain_scores_gemma":[0.998027,0.0002602663,0.0005097473,0.0002799939,0.0003198625,0.0006030915],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005093091,0.00025122866,0.00044137784,0.00029013463,0.00039414273,0.000035630535,0.00014461743,0.000109067376,0.0002109947],"category_scores_gemma":[0.0008210314,0.00015747991,0.0004439162,0.00040014202,0.00017277124,0.0003232613,0.00006332467,0.000588503,0.000104650724],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021162657,0.0011919932,0.6401037,0.000048771668,0.00037547876,0.000052228264,0.0005165131,0.000025574498,0.35687295,0.000017194756,0.00043047406,0.0001535214],"study_design_scores_gemma":[0.002039691,0.00089496345,0.9865578,0.0002810416,0.00097257644,0.0019246772,0.00060387177,0.000005927217,0.0046883356,0.000033347063,0.0017889567,0.0002088114],"about_ca_topic_score_codex":0.000024374882,"about_ca_topic_score_gemma":0.000015048251,"teacher_disagreement_score":0.35218462,"about_ca_system_score_codex":0.00057063653,"about_ca_system_score_gemma":0.00018987573,"threshold_uncertainty_score":0.64218444},"labels":[],"label_agreement":null},{"id":"W2113151405","doi":"10.1128/jcm.42.12.5681-5688.2004","title":"Genetic Analysis of Diverse Disease-Causing Pneumococci Indicates High Levels of Diversity within Serotypes and Capsule Switching","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Wellcome Trust","keywords":"Multilocus sequence typing; Serotype; Biology; Genotype; Phylogenetic tree; Typing; Genetic diversity; Disease; Virology; Microbiology; Streptococcus pneumoniae; Genetics; Gene; Bacteria; Population; Medicine; Pathology","score_opus":0.07046795982783136,"score_gpt":0.35794869748338365,"score_spread":0.28748073765555227,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113151405","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986073,0.00015659929,0.00030121917,0.00054361357,0.00025315143,0.000079338686,0.000048869995,0.0000042826405,0.0000056663207],"genre_scores_gemma":[0.9989704,0.00011749449,0.00055155915,0.00026098386,0.00008621879,1.8094231e-7,0.000002058556,0.0000052229093,0.000005902328],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984004,0.00015364792,0.0011008773,0.00014853186,0.000071176044,0.00012538656],"domain_scores_gemma":[0.99806404,0.00022758072,0.0011587318,0.00013140614,0.00022579634,0.0001924465],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005859593,0.000103778366,0.00090765324,0.00036663236,0.00009315959,0.0000034187851,0.0000876019,0.00015899005,0.000041057738],"category_scores_gemma":[0.0005202467,0.00007491595,0.00038563352,0.00029215578,0.0003072135,0.000053128697,0.00014981335,0.0003513089,0.0000012070191],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001434047,0.00025522715,0.5993376,0.000037428938,0.0014664043,0.00006381081,0.00021104183,0.00073296984,0.39730346,0.000020465108,0.0000037425852,0.0004244681],"study_design_scores_gemma":[0.001782026,0.0006590888,0.98938686,0.00011406671,0.0038009793,0.0001354772,0.00009647529,0.000018993054,0.003647444,0.0002585104,0.000029731944,0.00007037755],"about_ca_topic_score_codex":0.0000598764,"about_ca_topic_score_gemma":0.00003452651,"teacher_disagreement_score":0.39365602,"about_ca_system_score_codex":0.000026537975,"about_ca_system_score_gemma":0.00021119165,"threshold_uncertainty_score":0.3054984},"labels":[],"label_agreement":null},{"id":"W2113256741","doi":"10.1016/s0954-6111(03)00166-5","title":"Sequential IV/PO moxifloxacin treatment of patients with severe community-acquired pneumonia","year":2003,"lang":"en","type":"article","venue":"Respiratory Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Bayer (Canada)","funders":"","keywords":"Moxifloxacin; Medicine; Levofloxacin; Trovafloxacin; Internal medicine; Community-acquired pneumonia; Pneumonia; Amoxicillin; Clarithromycin; Population; Clinical endpoint; Adverse effect; Surgery; Gastroenterology; Randomized controlled trial; Antibiotics; Helicobacter pylori","score_opus":0.040390219194646367,"score_gpt":0.2951960758639761,"score_spread":0.25480585666932976,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113256741","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98846155,0.00036079556,0.00006604739,0.0002764213,0.00030994727,0.00084019476,0.000032982036,0.00010665708,0.009545421],"genre_scores_gemma":[0.998037,0.00003892005,0.00005022127,0.0010804442,0.00018286773,0.000058460482,0.000049973485,0.00005836871,0.00044376115],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9975284,0.0005465929,0.00063128275,0.00030527942,0.0005830118,0.00040547247],"domain_scores_gemma":[0.99793977,0.00014917133,0.00026809005,0.0008963155,0.00036374026,0.00038289875],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00035184599,0.0003900432,0.0008415288,0.000328617,0.00031950857,0.0000065799018,0.00011388552,0.0001798354,0.0004590793],"category_scores_gemma":[0.0001964385,0.00025224913,0.00013520692,0.00053742103,0.0005198024,0.00010242357,0.000019482784,0.00024692083,0.00003206137],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00069505314,0.0033710513,0.83604115,0.00031767067,0.0006105685,0.0001266687,0.0016630715,0.000046703124,0.1514629,0.0003526043,0.0006567154,0.0046558655],"study_design_scores_gemma":[0.022888202,0.022755725,0.64428836,0.0005409605,0.0009406158,0.000118755175,0.0008292232,0.0000073066485,0.013970655,0.000052810465,0.2930828,0.0005245604],"about_ca_topic_score_codex":0.0000756203,"about_ca_topic_score_gemma":0.000049330763,"teacher_disagreement_score":0.2924261,"about_ca_system_score_codex":0.0002749158,"about_ca_system_score_gemma":0.00033195713,"threshold_uncertainty_score":0.99999297},"labels":[],"label_agreement":null},{"id":"W2113764094","doi":"10.1111/jvim.14627","title":"Antimicrobial use Guidelines for Treatment of Respiratory Tract Disease in Dogs and Cats: Antimicrobial Guidelines Working Group of the International Society for Companion Animal Infectious Diseases","year":2017,"lang":"en","type":"article","venue":"Journal of Veterinary Internal Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":368,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Saskatoon Medical Imaging; University of Saskatchewan; Saskatchewan Health Authority","funders":"University of California, Davis; University of Missouri; North Carolina State University; Ohio State University","keywords":"Medicine; Antimicrobial; Intensive care medicine; Companion animal; Infectious disease (medical specialty); CATS; Clinical trial; Respiratory tract infections; Disease; Respiratory tract; Respiratory system; Internal medicine; Veterinary medicine; Microbiology","score_opus":0.16310188906376685,"score_gpt":0.41017909419475757,"score_spread":0.2470772051309907,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113764094","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98863393,0.0004892676,0.00040351725,0.008072998,0.0017378088,0.0005304309,0.00011539897,0.000006774864,0.000009847285],"genre_scores_gemma":[0.9961299,0.00058276334,0.0005082564,0.00096816174,0.0017354838,0.000013551743,0.000006860126,0.00002274865,0.00003229469],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9980722,0.000037653088,0.0012720383,0.00019031472,0.00025597808,0.00017179115],"domain_scores_gemma":[0.99695206,0.00023289632,0.0014177673,0.00026955444,0.0009797255,0.00014801229],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003901733,0.00021820568,0.00068337005,0.00020353268,0.00015928595,0.00003232124,0.00026165176,0.000076614095,0.000005130164],"category_scores_gemma":[0.0014588946,0.0001324824,0.0005774926,0.00005731594,0.00037877975,0.0002540556,0.00007926087,0.00011555528,6.6396545e-8],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026809731,0.00072763267,0.55487055,0.0002237911,0.00028677803,0.00005560165,0.00017317037,0.00003667094,0.43546593,0.000014065059,0.003132661,0.0023322084],"study_design_scores_gemma":[0.015875295,0.009723818,0.9323308,0.00602531,0.0008719593,0.0010535626,0.00010804501,0.0008579802,0.002100838,0.000047925547,0.03081898,0.00018547852],"about_ca_topic_score_codex":0.00015815068,"about_ca_topic_score_gemma":0.000022213848,"teacher_disagreement_score":0.43336508,"about_ca_system_score_codex":0.00015890771,"about_ca_system_score_gemma":0.00018497393,"threshold_uncertainty_score":0.54024756},"labels":[],"label_agreement":null},{"id":"W2113905359","doi":"10.1128/iai.00573-08","title":"Modular Arrangement of Allelic Variants Explains the Divergence in <i>Moraxella catarrhalis</i> UspA Protein Function","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; U.S. Public Health Service","keywords":"Moraxella catarrhalis; Biology; Genetics; Moraxella (Branhamella) catarrhalis; Peptide sequence; Gene; Nucleic acid sequence; Sequence alignment; Phylogenetic tree; Phenotype; Microbiology; Bacteria; Haemophilus influenzae","score_opus":0.031716167167206384,"score_gpt":0.24853971133195055,"score_spread":0.21682354416474417,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113905359","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968632,0.00011527601,0.0007309819,0.00033222852,0.00020310303,0.00043977902,0.0000037402538,0.00003018727,0.0012815114],"genre_scores_gemma":[0.9989597,0.0004598579,0.0000071625664,0.00026872737,0.000044671167,0.00005447831,0.000008036935,0.0000067225556,0.00019061727],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992662,0.00014601767,0.00021669046,0.00011818849,0.00013009954,0.00012278093],"domain_scores_gemma":[0.99952656,0.000021002861,0.00007513844,0.0002476897,0.000080392434,0.000049207603],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002520583,0.000098651035,0.00015337473,0.00011304579,0.00031816156,0.000005883145,0.000036398804,0.000066968125,0.000078732555],"category_scores_gemma":[0.00006106033,0.00007082056,0.000054739165,0.0002894086,0.00013154728,0.0000998478,0.000037351077,0.00025232116,0.000011421592],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000112026944,0.0006314058,0.54029083,0.00008597118,0.000076098004,0.0000133781705,0.0012179019,0.00014320745,0.4552218,0.0002237216,0.00016478273,0.0018188895],"study_design_scores_gemma":[0.0007990247,0.00034129972,0.9825132,0.000057511443,0.000031445074,0.00009482599,0.00012150136,0.00013939578,0.004865716,0.00007692808,0.010879471,0.000079681144],"about_ca_topic_score_codex":0.0026057386,"about_ca_topic_score_gemma":0.00031523756,"teacher_disagreement_score":0.4503561,"about_ca_system_score_codex":0.000037975497,"about_ca_system_score_gemma":0.0000486256,"threshold_uncertainty_score":0.39391148},"labels":[],"label_agreement":null},{"id":"W2114420534","doi":"10.1128/iai.72.5.2659-2670.2004","title":"Prevention of Pneumococcal Disease in Mice Immunized with Conserved Surface-Accessible Proteins","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier universitaire de Québec","funders":"","keywords":"Biology; Immunoscreening; Epitope; Antigen; Streptococcus pneumoniae; Virology; Microbiology; Fusion protein; Gene; Peptide sequence; Recombinant DNA; Genetics; Antibiotics","score_opus":0.02171698229797228,"score_gpt":0.2909363972315034,"score_spread":0.2692194149335311,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114420534","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980482,0.000078967925,0.00029494186,0.00030322498,0.000053908163,0.00061534194,0.0000033961094,0.000053861626,0.00054818374],"genre_scores_gemma":[0.99961597,0.00011640616,0.00006792851,0.000045089266,0.000010124301,0.000034009696,0.000012510495,0.000010222658,0.00008773291],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999305,0.0001241049,0.00023574056,0.000118839234,0.000092534,0.00012376311],"domain_scores_gemma":[0.9994961,0.000022593546,0.000099249504,0.00018456217,0.00009954836,0.00009795071],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001859479,0.00010883364,0.00021277658,0.00013191816,0.00012931334,0.000014485731,0.00002872096,0.000065505934,0.000035601755],"category_scores_gemma":[0.00006372921,0.00008721387,0.0000553028,0.0003549371,0.00011577254,0.0001768239,0.000027046042,0.0002620169,0.000004192318],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004590253,0.0009935901,0.52869934,0.00019583468,0.000041260464,0.0000087979415,0.00015555965,0.0005094913,0.46850175,0.000086469954,7.1612607e-7,0.0003481527],"study_design_scores_gemma":[0.0039908644,0.00065902184,0.96779066,0.00038929336,0.000058465706,0.00003830699,0.00005270754,0.000054639597,0.026427932,0.00019235635,0.0002456711,0.00010007392],"about_ca_topic_score_codex":0.0026186842,"about_ca_topic_score_gemma":0.0007300129,"teacher_disagreement_score":0.44207382,"about_ca_system_score_codex":0.000062547755,"about_ca_system_score_gemma":0.00024254476,"threshold_uncertainty_score":0.39586845},"labels":[],"label_agreement":null},{"id":"W2114795431","doi":"10.1086/383153","title":"Respiratory Fluoroquinolones: Differences in the Details","year":2004,"lang":"en","type":"letter","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Respiratory system; Intensive care medicine; Internal medicine","score_opus":0.09072196193857021,"score_gpt":0.37013925420415983,"score_spread":0.27941729226558965,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114795431","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.52271104,0.003046681,0.000025750045,0.46181074,0.0037373283,0.0024161993,0.0001780413,0.00070927496,0.00536494],"genre_scores_gemma":[0.29117972,0.00033936196,6.4007935e-7,0.7014666,0.006357996,0.00030040188,0.00007771765,0.000055372046,0.00022215427],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.995876,0.00092544116,0.0012239709,0.0007849315,0.0005695635,0.00062010146],"domain_scores_gemma":[0.99649405,0.0017175291,0.00035391373,0.0010752851,0.00014445477,0.00021475762],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.00043438253,0.00052502804,0.0012079165,0.0003712066,0.00024959762,0.000109721885,0.00039026735,0.0014197495,0.00020093024],"category_scores_gemma":[0.0014970603,0.00032845326,0.0009850824,0.0005199351,0.00087408896,0.00009456785,0.00007986862,0.004083279,0.00044589044],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010830949,0.00089477265,0.6955356,0.00026680293,0.00018219845,0.0019751177,0.000037961498,0.0000013706839,0.000005587941,0.00003104087,0.29984066,0.0012180408],"study_design_scores_gemma":[0.0012112516,0.000957467,0.5554803,0.00036406622,0.0005603576,0.000051215673,0.000024101442,0.000001027823,8.7590456e-7,0.00087806594,0.44017193,0.00029935117],"about_ca_topic_score_codex":0.00003452868,"about_ca_topic_score_gemma":0.000063997926,"teacher_disagreement_score":0.23965591,"about_ca_system_score_codex":0.00018773277,"about_ca_system_score_gemma":0.0010256423,"threshold_uncertainty_score":0.99991673},"labels":[],"label_agreement":null},{"id":"W2114961161","doi":"10.1086/430783","title":"Antimicrobial Resistance in<i>Haemophilus influenzae:</i>How Can We Prevent the Inevitable? Commentary on Antimicrobial Resistance in<i>H. influenzae</i>Based on Data from the TARGETed Surveillance Program","year":2005,"lang":"en","type":"review","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta Hospital; Alberta Hospital Edmonton","funders":"Bayer HealthCare","keywords":"Haemophilus influenzae; Streptococcus pneumoniae; Medicine; Chronic bronchitis; Moraxella catarrhalis; Amp resistance; Microbiology; Respiratory tract infections; Antibiotic resistance; Intensive care medicine; Antimicrobial; Epidemiology; Empiric therapy; Drug resistance; Immunology; Antibiotics; Biology; Internal medicine; Respiratory system","score_opus":0.07081315227120162,"score_gpt":0.3857606907411555,"score_spread":0.3149475384699539,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114961161","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0084956745,0.9186962,0.000004900349,0.04790234,0.0023327328,0.0102806445,0.0113038905,0.0005793664,0.0004042413],"genre_scores_gemma":[0.022745281,0.91545457,0.000027740614,0.05357479,0.0032665406,0.0008812133,0.0036955914,0.00023772127,0.00011658038],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.98996466,0.00341201,0.0027039407,0.0020984805,0.00070660777,0.0011142993],"domain_scores_gemma":[0.9868722,0.0066911746,0.001368385,0.0044125817,0.00018988141,0.00046575625],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.0014794933,0.001335511,0.0035223037,0.0003793489,0.0006024604,0.00029128205,0.0017320028,0.0008470829,0.000045802695],"category_scores_gemma":[0.0031010846,0.0008366071,0.0011775974,0.0018289969,0.0011276446,0.00021429689,0.0005391781,0.0035228184,0.00006940877],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016057377,0.024634145,0.21826111,0.011468109,0.0016676072,0.00095609465,0.00011623347,0.00042011085,0.0000069579783,0.000039582294,0.53844744,0.20237689],"study_design_scores_gemma":[0.003375178,0.0004038974,0.03674098,0.023456605,0.0010785814,0.0000068610966,0.0000067762967,0.000026303882,9.0162695e-7,0.000051941253,0.93401444,0.00083755085],"about_ca_topic_score_codex":0.00023601073,"about_ca_topic_score_gemma":0.022278426,"teacher_disagreement_score":0.395567,"about_ca_system_score_codex":0.0008004852,"about_ca_system_score_gemma":0.001759932,"threshold_uncertainty_score":0.9999396},"labels":[],"label_agreement":null},{"id":"W2115040805","doi":"10.1017/s0950268809991464","title":"Measuring the incidence of adult community-acquired pneumonia in a Native American community","year":2010,"lang":"en","type":"article","venue":"Epidemiology and Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"U.S. Public Health Service; Sanofi","keywords":"Community-acquired pneumonia; Medicine; Pneumonia; Incidence (geometry); Chest radiograph; Epidemiology; Population; Radiography; Rochester Epidemiology Project; Pediatrics; Internal medicine; Surgery; Environmental health; Population based study","score_opus":0.060450798001803974,"score_gpt":0.34426528384543376,"score_spread":0.2838144858436298,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115040805","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99588937,0.000017668059,0.00014228033,0.0019654788,0.00018725016,0.0001967354,0.0000020122286,0.000035627385,0.0015635936],"genre_scores_gemma":[0.9980994,0.00012945435,0.0000380781,0.0016213025,0.00004709815,0.00003915083,0.000003893942,0.000006599096,0.0000150389005],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9964601,0.002848046,0.0003725626,0.00009393492,0.000049702263,0.00017564502],"domain_scores_gemma":[0.99671745,0.0024969692,0.00023865468,0.0003438055,0.0001416202,0.000061497274],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0030543837,0.000108623826,0.0003942012,0.00014697068,0.0005646315,0.0000024931735,0.00007417845,0.00012887073,0.000009133604],"category_scores_gemma":[0.0069793733,0.00007451811,0.00006304409,0.00031749008,0.0010839175,0.00008672396,0.000070819966,0.001732794,0.0000036839529],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003610883,0.00015227865,0.9232735,0.000033695214,0.000027504864,7.2723657e-7,0.0013883793,0.00001870858,0.070927665,0.00074955146,0.000019212383,0.0033726622],"study_design_scores_gemma":[0.00032424106,0.000500299,0.99493206,0.000059314832,0.00002887524,0.00012730995,0.0004576282,0.00029616887,0.0014193724,0.0013598087,0.00043014644,0.00006480757],"about_ca_topic_score_codex":0.01515521,"about_ca_topic_score_gemma":0.015508155,"teacher_disagreement_score":0.07165852,"about_ca_system_score_codex":0.00003134141,"about_ca_system_score_gemma":0.000043169242,"threshold_uncertainty_score":0.991403},"labels":[],"label_agreement":null},{"id":"W2115744674","doi":"10.1086/374784","title":"Randomized, Double‐Blind, Controlled Trial of Pneumococcal Vaccination in Renal Transplant Recipients","year":2003,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":129,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University of Toronto","funders":"","keywords":"Immunogenicity; Medicine; Immunosuppression; Vaccination; Pneumococcal conjugate vaccine; Serotype; Immunology; Antibody titer; Transplantation; Streptococcus pneumoniae; Titer; Antibody; Internal medicine; Biology; Microbiology; Antibiotics","score_opus":0.018428206577734908,"score_gpt":0.2975348931756323,"score_spread":0.2791066865978974,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115744674","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99438715,0.00032128394,0.0001986446,0.00026519972,0.0007124979,0.0018099817,0.000003954614,0.000012835577,0.0022884265],"genre_scores_gemma":[0.9990296,0.00058147823,0.0000019071031,0.00007561299,0.00018783943,0.000054316053,0.0000015621457,0.000012459733,0.000055239816],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9975222,0.0008296035,0.001029833,0.00008204465,0.00036946172,0.00016687077],"domain_scores_gemma":[0.99802613,0.0007240299,0.0006641131,0.00015514127,0.000290524,0.00014008443],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016411658,0.00015076215,0.0009592047,0.0004219716,0.00008629222,0.000011777944,0.00007937536,0.00008019438,0.000112028276],"category_scores_gemma":[0.00077704585,0.00008203125,0.0005600708,0.0003180587,0.0000855325,0.00011503198,0.0000054690927,0.0003108373,0.0000035285627],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.97809875,0.0017941614,0.015203436,0.000022330283,0.0004060942,0.000034718287,0.00022116456,0.0005369588,0.0032537745,0.000247133,0.0000255219,0.00015596914],"study_design_scores_gemma":[0.9848057,0.0013373803,0.010407426,0.0001559848,0.0014232266,0.0004602885,0.000031380467,0.00003145849,0.00075565424,0.00040966188,0.00010237711,0.00007943535],"about_ca_topic_score_codex":0.000012840119,"about_ca_topic_score_gemma":0.000019380952,"teacher_disagreement_score":0.006706989,"about_ca_system_score_codex":0.00009167309,"about_ca_system_score_gemma":0.00031047032,"threshold_uncertainty_score":0.33451372},"labels":[],"label_agreement":null},{"id":"W2115747736","doi":"10.1378/chest.122.3.1102","title":"Fluoroquinolones for Respiratory Infection","year":2002,"lang":"en","type":"letter","venue":"CHEST Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôpital Maisonneuve-Rosemont","funders":"","keywords":"Medicine; Community-acquired pneumonia; Pneumonia; Levofloxacin; Respiratory tract infections; Intensive care medicine; MEDLINE; Internal medicine; Family medicine; Respiratory system; Antibiotics","score_opus":0.08045655330935803,"score_gpt":0.3112274445854783,"score_spread":0.23077089127612027,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115747736","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.01700805,0.0020217027,0.0015474536,0.962732,0.008520181,0.0012295572,0.00005102345,0.00033004128,0.0065599955],"genre_scores_gemma":[0.0015007961,0.00070645794,0.00024091578,0.92808723,0.05859145,0.00013926641,0.00006017566,0.0001825559,0.010491134],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983902,0.00007295594,0.00048558114,0.00027328762,0.00031883377,0.0004591605],"domain_scores_gemma":[0.99874216,0.00009736916,0.00034371967,0.00030953428,0.00034087186,0.00016634172],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0002323179,0.0003167298,0.0005022197,0.0004936609,0.00043042266,0.000092411756,0.00009821516,0.001117211,0.00036231478],"category_scores_gemma":[0.00021063525,0.00025941498,0.0005637283,0.00015772537,0.00010787464,0.00011383035,0.000018960698,0.0032250956,0.00019656096],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012535668,0.0000614153,0.004337621,0.0005299693,0.00019293687,0.00054918014,0.000037801932,0.0000014691933,0.0019307919,0.0000021865217,0.98875177,0.0035923268],"study_design_scores_gemma":[0.0009768363,0.0006975303,0.0077447905,0.00029145056,0.00041286318,0.004012451,0.000003444765,0.0000069324096,0.0003096402,0.000081033104,0.98520464,0.0002583967],"about_ca_topic_score_codex":0.0000020896475,"about_ca_topic_score_gemma":0.0000013225244,"teacher_disagreement_score":0.05007127,"about_ca_system_score_codex":0.0002744722,"about_ca_system_score_gemma":0.0002474072,"threshold_uncertainty_score":0.9999858},"labels":[],"label_agreement":null},{"id":"W2116117562","doi":"10.1086/379076","title":"Pneumonia in Older Persons","year":2003,"lang":"en","type":"review","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":99,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Pneumonia; Intensive care medicine; Population; Observational study; Pneumococcal vaccine; Pneumococcal pneumonia; Randomized controlled trial; Clinical trial; Pediatrics; Internal medicine; Streptococcus pneumoniae; Environmental health; Antibiotics","score_opus":0.09338161488079946,"score_gpt":0.4544549222958315,"score_spread":0.3610733074150321,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116117562","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00049149746,0.9890872,0.0000062666545,0.00006840732,0.001603554,0.0014733145,0.00010576378,0.0002804797,0.0068835113],"genre_scores_gemma":[0.00043560326,0.995692,0.000001380786,0.0011597646,0.0006547153,0.00039400702,0.000090635716,0.00011292114,0.001458975],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99618447,0.00068886566,0.0015372969,0.000830786,0.00023901334,0.0005195814],"domain_scores_gemma":[0.9971882,0.0008821641,0.00038549115,0.0007576272,0.00007963284,0.0007068908],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003186554,0.00059836864,0.0031343848,0.0005112271,0.00013997304,0.000047477348,0.00013885746,0.0008561804,0.00047455146],"category_scores_gemma":[0.0010276946,0.00046053942,0.002338762,0.00084708724,0.0003199683,0.0000703565,0.00006549299,0.0014566013,0.00084291864],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000004507416,0.0052121556,0.15796126,0.013899274,0.0006843546,0.00074417633,0.000013849728,8.9254996e-7,2.5977857e-7,0.000118268894,0.006100955,0.81526005],"study_design_scores_gemma":[0.0009859268,0.00035240053,0.025933139,0.0075237225,0.0031044201,0.00016801302,0.0000067324363,0.0000012946443,1.1993358e-8,0.000039534472,0.96144354,0.000441288],"about_ca_topic_score_codex":0.0000069281396,"about_ca_topic_score_gemma":0.000020549489,"teacher_disagreement_score":0.95534253,"about_ca_system_score_codex":0.00025740967,"about_ca_system_score_gemma":0.0013125327,"threshold_uncertainty_score":0.99993503},"labels":[],"label_agreement":null},{"id":"W2116149498","doi":"10.1128/aac.48.10.3954-3958.2004","title":"Mutant Prevention Concentrations for Single-Step Fluoroquinolone-Resistant Mutants of Wild-Type, Efflux-Positive, or ParC or GyrA Mutation-Containing <i>Streptococcus pneumoniae</i> Isolates","year":2004,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Health Sciences Centre","funders":"","keywords":"Gatifloxacin; Moxifloxacin; Levofloxacin; Gemifloxacin; Efflux; Microbiology; Ciprofloxacin; Mutant; Streptococcus pneumoniae; Biology; Antibacterial agent; Quinolone; Sparfloxacin; Minimum inhibitory concentration; DNA gyrase; Ofloxacin; Antibiotics; Escherichia coli; Genetics; Gene","score_opus":0.027253069262020514,"score_gpt":0.2952939183410836,"score_spread":0.26804084907906306,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116149498","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99432653,0.000029269662,0.001483518,0.0020676476,0.00021994395,0.0015276393,0.00012921964,0.000071429204,0.00014479274],"genre_scores_gemma":[0.99528015,0.00038593987,0.0008676049,0.0029225862,0.0001176361,0.00004389663,0.00009671905,0.000047720852,0.00023775414],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99852556,0.000034860903,0.0005625141,0.0003857585,0.00013405197,0.00035728168],"domain_scores_gemma":[0.99906087,0.000083133345,0.00027800017,0.0002046558,0.00024249987,0.00013086942],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000094992676,0.0002765038,0.00047298806,0.000107450236,0.00030490465,0.000053075957,0.00008063952,0.0001657063,0.000089758614],"category_scores_gemma":[0.000053057724,0.00020651816,0.00015994287,0.000295128,0.00018128686,0.00016115603,0.000018160239,0.00012488563,0.000004049866],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016435,0.0009231441,0.0054414687,0.00017847019,0.0003644706,0.000045780507,0.00077882176,0.000028943725,0.98604083,0.00007918901,0.00027743683,0.004197949],"study_design_scores_gemma":[0.02152071,0.0104298135,0.023532815,0.0018375638,0.00065952906,0.00059986714,0.0007913508,0.00030068288,0.9233096,0.00017713789,0.016084172,0.00075676246],"about_ca_topic_score_codex":0.00004229705,"about_ca_topic_score_gemma":0.00009318051,"teacher_disagreement_score":0.06273123,"about_ca_system_score_codex":0.00009108012,"about_ca_system_score_gemma":0.00029889835,"threshold_uncertainty_score":0.84215665},"labels":[],"label_agreement":null},{"id":"W2116256003","doi":"10.1093/jac/dku207","title":"Clinical cure rates in subjects treated with azithromycin for community-acquired respiratory tract infections caused by azithromycin-susceptible or azithromycin-resistant Streptococcus pneumoniae: analysis of Phase 3 clinical trial data","year":2014,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont; Pfizer (Canada); Mount Sinai Hospital; University of Manitoba","funders":"Pfizer","keywords":"Azithromycin; Medicine; Streptococcus pneumoniae; Internal medicine; Pneumonia; Bronchitis; Otitis; Respiratory tract infections; Gastroenterology; Community-acquired pneumonia; Chronic bronchitis; Antibacterial agent; Surgery; Respiratory system; Antibiotics; Microbiology; Biology","score_opus":0.1098162839015725,"score_gpt":0.4364307822001816,"score_spread":0.3266144982986091,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116256003","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99484354,0.000055163164,0.00091060234,0.001466554,0.0004214137,0.0017192084,0.0004830764,0.000054453365,0.000045962075],"genre_scores_gemma":[0.9961657,0.0005002995,0.00033659968,0.0018963286,0.00063916616,0.000022109718,0.00025416876,0.00010972478,0.0000759063],"study_design_codex":"bench_or_experimental","study_design_gemma":"randomized_trial","domain_scores_codex":[0.99276453,0.0017736526,0.0037720108,0.0006374923,0.00047050716,0.0005817795],"domain_scores_gemma":[0.9922999,0.0021994903,0.0025637057,0.0015394386,0.0009586381,0.0004388192],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00515217,0.0005856349,0.0031922418,0.0011402378,0.0003614258,0.00008739562,0.00069423753,0.00061403186,0.00015165973],"category_scores_gemma":[0.001090049,0.00041086102,0.0010667775,0.0022087423,0.0007404695,0.00045888717,0.000068726775,0.001392221,0.00000262664],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.047584932,0.028190054,0.25971663,0.00017450411,0.005604544,0.00006266422,0.00024800454,0.00008829282,0.6418638,0.0000035242783,0.013936803,0.0025261987],"study_design_scores_gemma":[0.49377313,0.13958953,0.23444016,0.0015652567,0.011964879,0.00013180632,0.0006778024,0.0014999515,0.050603114,0.000013110945,0.06429478,0.0014464812],"about_ca_topic_score_codex":0.00012387913,"about_ca_topic_score_gemma":0.0011790995,"teacher_disagreement_score":0.59126073,"about_ca_system_score_codex":0.00016624498,"about_ca_system_score_gemma":0.0012117468,"threshold_uncertainty_score":0.9998343},"labels":[],"label_agreement":null},{"id":"W2116542524","doi":"10.1093/jac/dkg465","title":"Worldwide incidence, molecular epidemiology and mutations implicated in fluoroquinolone-resistant Streptococcus pneumoniae: data from the global PROTEKT surveillance programme","year":2003,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":126,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Levofloxacin; DNA gyrase; Topoisomerase IV; Microbiology; Moxifloxacin; Quinupristin; Streptococcus pneumoniae; Biology; Virology; Genetics; Antibiotics; Gene; Staphylococcus aureus; Bacteria; Vancomycin; Escherichia coli","score_opus":0.036029876901980985,"score_gpt":0.3276481002988571,"score_spread":0.2916182233968761,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116542524","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.973453,0.00060227676,0.0006402302,0.024326472,0.00012224201,0.00067691033,0.00008902275,0.000019683726,0.0000701975],"genre_scores_gemma":[0.99285555,0.00038700155,0.0014049318,0.00519845,0.00008698701,0.000010377385,0.000027674447,0.000020272071,0.000008729913],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9979695,0.00040341378,0.00080800435,0.00030656537,0.00014032182,0.00037218182],"domain_scores_gemma":[0.99832475,0.00028327806,0.00050181104,0.000518417,0.00022024827,0.00015150735],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010476736,0.00020047309,0.0005663481,0.00008791139,0.00010974352,0.000034811914,0.0003018774,0.0001414799,0.000023280487],"category_scores_gemma":[0.0009566589,0.00013448331,0.000112294445,0.00049314444,0.00026670317,0.00012368071,0.00004364733,0.00043960122,0.0000036767804],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016930581,0.0002550229,0.61212385,0.000016168147,0.00017546238,0.00012307377,0.00006936949,0.000028294578,0.3835299,0.00009848101,0.0011621786,0.0022489016],"study_design_scores_gemma":[0.0050732633,0.0005150505,0.9429561,0.0003046712,0.00010494186,0.0012164889,0.000118214855,0.0000950161,0.012254681,0.00150498,0.03554855,0.00030807004],"about_ca_topic_score_codex":0.00013845132,"about_ca_topic_score_gemma":0.0003358378,"teacher_disagreement_score":0.37127522,"about_ca_system_score_codex":0.000118061434,"about_ca_system_score_gemma":0.00038303513,"threshold_uncertainty_score":0.548407},"labels":[],"label_agreement":null},{"id":"W2116760748","doi":"10.1183/09031936.00070611","title":"Widespread use of serological tests for tuberculosis: data from 22 high-burden countries: Table 1–","year":2012,"lang":"en","type":"letter","venue":"European Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"McGill University Health Centre; Canadian Institutes of Health Research; Council of Scientific and Industrial Research, India; European and Developing Countries Clinical Trials Partnership; Lady Tata Memorial Trust; McGill University","keywords":"Medicine; Ammonium; Asthma; Ammonia; Exhaled breath condensate; Internal medicine; Biochemistry; Chemistry; Organic chemistry","score_opus":0.13474202854236714,"score_gpt":0.3230126210883621,"score_spread":0.18827059254599496,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116760748","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.46099225,0.017935835,0.0029441125,0.45898283,0.017058799,0.006147521,0.027157312,0.0010643821,0.0077169584],"genre_scores_gemma":[0.008633637,0.00060054765,0.001347051,0.92348945,0.059820328,0.000040932166,0.0019230962,0.00058547436,0.0035594937],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99473155,0.0011557667,0.0014751726,0.0008136562,0.0009013563,0.0009224969],"domain_scores_gemma":[0.9943034,0.0012138173,0.0011485209,0.0021488934,0.0007127364,0.00047262575],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001663014,0.0006850844,0.0012529377,0.00043110832,0.00044242069,0.00025701674,0.0010828545,0.0007682874,0.0013417169],"category_scores_gemma":[0.0015146658,0.0005234015,0.00038327483,0.00023920725,0.00036414535,0.0007165594,0.0004627886,0.0036964056,0.00042389263],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016905459,0.00013493316,0.0094112065,0.00021263963,0.0008260041,0.0015635849,0.000051676125,0.00002189487,0.0076316427,0.0000040628347,0.97937185,0.0006014479],"study_design_scores_gemma":[0.001813473,0.0008173841,0.013952005,0.0007974914,0.001521301,0.0005992178,0.00001649239,0.000016294967,0.00017623737,0.000020541678,0.97977924,0.0004903214],"about_ca_topic_score_codex":0.000037499,"about_ca_topic_score_gemma":0.000005162276,"teacher_disagreement_score":0.46450663,"about_ca_system_score_codex":0.00017847512,"about_ca_system_score_gemma":0.00060056895,"threshold_uncertainty_score":0.99972177},"labels":[],"label_agreement":null},{"id":"W2116911541","doi":"10.1086/315761","title":"Molecular Epidemiology of<i>Streptococcus pneumoniae</i>Causing Invasive Disease in 5 Countries","year":2000,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":107,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Serotype; Streptococcus pneumoniae; Penicillin; Epidemiology; Molecular epidemiology; Bacteremia; Case fatality rate; Pneumococcal infections; Biology; Microbiology; Typing; Multilocus sequence typing; Pneumococcal disease; Antibiotics; Virology; Medicine; Genotype; Internal medicine","score_opus":0.01355882030078252,"score_gpt":0.2883371305256995,"score_spread":0.27477831022491694,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116911541","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948664,0.0029501324,0.000065263135,0.0012886627,0.00014113302,0.00027172454,0.000020387246,0.000021575266,0.00037473635],"genre_scores_gemma":[0.9966714,0.0016750157,0.0000018918947,0.0014732392,0.00012648913,0.000008496948,0.00000196727,0.000017648206,0.000023859142],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982214,0.00046729873,0.00073892897,0.000109477594,0.000210706,0.00025221496],"domain_scores_gemma":[0.99800736,0.0008084003,0.00041059632,0.00026999874,0.00022215505,0.00028148585],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045497512,0.00016925548,0.0005424712,0.00024327311,0.00010741595,0.0000056971153,0.00009635098,0.0000616731,0.00022273787],"category_scores_gemma":[0.0010753174,0.00010804125,0.0002888806,0.000311533,0.0003352494,0.00012652103,0.000021199916,0.00030525035,0.000014520002],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002428642,0.00037862203,0.9856436,0.00010378976,0.00014578148,0.00036460522,0.0001499987,0.00892886,0.0031659345,0.00010942893,0.00007473181,0.0006917678],"study_design_scores_gemma":[0.0016741655,0.0007031971,0.991694,0.000543951,0.0008354576,0.000513918,0.000080568585,0.000075230564,0.00063401356,0.0022506856,0.00084965985,0.00014519703],"about_ca_topic_score_codex":0.000033054792,"about_ca_topic_score_gemma":0.000015954885,"teacher_disagreement_score":0.008853628,"about_ca_system_score_codex":0.00010094989,"about_ca_system_score_gemma":0.0005406011,"threshold_uncertainty_score":0.44057944},"labels":[],"label_agreement":null},{"id":"W2117153084","doi":"10.1177/000992280404300203","title":"Optimizing Antibacterial Therapy for Community-Acquired Respiratory Tract Infections in Children in an Era of Bacterial Resistance","year":2004,"lang":"en","type":"review","venue":"Clinical Pediatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital","funders":"","keywords":"Medicine; Streptococcus pneumoniae; Tolerability; Moraxella catarrhalis; Antibiotic resistance; Intensive care medicine; Haemophilus influenzae; Community-acquired pneumonia; Antibiotics; Empiric therapy; Respiratory tract infections; Pneumonia; Drug resistance; Microbiology; Internal medicine; Adverse effect; Respiratory system","score_opus":0.12353852824138793,"score_gpt":0.43272320467314807,"score_spread":0.3091846764317601,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117153084","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.40163952,0.59209013,0.00002920648,0.000043839773,0.0019174182,0.0037293604,0.00040251308,0.000088174354,0.00005984988],"genre_scores_gemma":[0.003837592,0.99199605,0.00030583603,0.00016729771,0.0028201707,0.00021520059,0.00053570716,0.00011201872,0.000010101414],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9943942,0.0015517459,0.0028882083,0.0005236223,0.00021115132,0.00043111254],"domain_scores_gemma":[0.9958533,0.0017981167,0.0010237283,0.00091508776,0.00017007312,0.00023968023],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0024151918,0.0004876633,0.0028506455,0.0006581647,0.00017661249,0.000039882147,0.0003537688,0.0012999782,0.000028480797],"category_scores_gemma":[0.0015162381,0.0004310611,0.000996192,0.0010810107,0.000254888,0.00019575558,0.00006950917,0.0022349413,0.0000052913447],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002099773,0.051370822,0.34073332,0.029495532,0.00059275597,0.000080834725,0.00073381665,0.000060782295,0.00017001653,0.0001331978,0.00045227353,0.5740769],"study_design_scores_gemma":[0.023138272,0.0098608,0.16416457,0.013281096,0.0019717847,0.000059165184,0.000042166583,0.0000017491723,0.0000035075784,0.00016020486,0.78579336,0.0015233264],"about_ca_topic_score_codex":0.000037189373,"about_ca_topic_score_gemma":0.00017736983,"teacher_disagreement_score":0.7853411,"about_ca_system_score_codex":0.0002719542,"about_ca_system_score_gemma":0.0022788455,"threshold_uncertainty_score":0.99999654},"labels":[],"label_agreement":null},{"id":"W2117167381","doi":"10.1093/cid/civ164","title":"Antibody Concentrations Against the Infecting Serotype in Vaccinated and Unvaccinated Children With Invasive Pneumococcal Disease in the United Kingdom, 2006–2013","year":2015,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre intégré universitaire de santé et de services sociaux de la Mauricie-et-du-Centre-du-Québec","funders":"","keywords":"Serotype; Medicine; Pneumococcal conjugate vaccine; Vaccination; Immunoglobulin G; Antibody; Virology; Pneumococcal vaccine; Confidence interval; Conjugate vaccine; Immunology; Streptococcus pneumoniae; Immunization; Microbiology; Biology; Internal medicine; Antibiotics","score_opus":0.055171806453276316,"score_gpt":0.3652612061127232,"score_spread":0.31008939965944693,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117167381","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99501044,0.0001810664,0.000023832217,0.002568157,0.00016254262,0.0016429293,0.00003517219,0.00014991564,0.00022594507],"genre_scores_gemma":[0.9959991,0.00021753363,8.5753476e-7,0.0031206333,0.00019235266,0.00014089429,0.00028871506,0.000031091604,0.000008817525],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9973418,0.00088562164,0.0006586963,0.00044578515,0.0002557997,0.00041227698],"domain_scores_gemma":[0.99734306,0.0011959558,0.00020752831,0.00046969467,0.00027577032,0.00050800946],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006159269,0.00029255124,0.0004387398,0.00028780327,0.00029194323,0.0001065676,0.00015855445,0.00014538878,0.0000139261465],"category_scores_gemma":[0.0028211388,0.00016314426,0.00012506373,0.0015882284,0.00037410686,0.00019927087,0.000078669196,0.0008284944,0.000019851435],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011670117,0.0012869205,0.99628025,0.000023564002,0.00010842257,0.00012292965,0.00019683984,0.0013159032,0.00010849525,0.00014875818,0.00012824683,0.00016297433],"study_design_scores_gemma":[0.004835453,0.0006772162,0.99197054,0.0001883159,0.00029472122,0.00003767763,0.00023965506,0.00078372087,0.000005275583,0.00016854888,0.0005788926,0.00021996662],"about_ca_topic_score_codex":0.00065272255,"about_ca_topic_score_gemma":0.0015085702,"teacher_disagreement_score":0.0047187516,"about_ca_system_score_codex":0.00009938156,"about_ca_system_score_gemma":0.0006527426,"threshold_uncertainty_score":0.66528296},"labels":[],"label_agreement":null},{"id":"W2117686449","doi":"10.1086/430829","title":"A Review of Streptococcus pneumoniae Infection Treatment Failures Associated with Fluoroquinolone Resistance","year":2005,"lang":"en","type":"review","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":186,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; University of Toronto","funders":"","keywords":"Medicine; Levofloxacin; Streptococcus pneumoniae; Ciprofloxacin; Respiratory tract infections; Pneumococcal infections; Intensive care medicine; Antibacterial agent; Internal medicine; Antibiotics; Microbiology; Respiratory system","score_opus":0.08691844660041878,"score_gpt":0.4325452582571029,"score_spread":0.3456268116566841,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117686449","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00032095442,0.99358326,0.000007167426,0.00017154422,0.00035751873,0.003441252,0.00041049763,0.00045503917,0.0012527865],"genre_scores_gemma":[0.0004187751,0.9957845,0.0000021171597,0.0005624005,0.00066376675,0.0011562087,0.0005233529,0.00012289918,0.0007659758],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99496186,0.0008965951,0.0023439024,0.0009155566,0.00039293445,0.0004891762],"domain_scores_gemma":[0.99479425,0.0011937761,0.0018877359,0.0010732549,0.0004953653,0.00055560784],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003569453,0.00086941535,0.0049718684,0.00035462878,0.0001954776,0.00003046008,0.00013900184,0.000682948,0.00021900584],"category_scores_gemma":[0.0020783,0.0005719184,0.0025783174,0.0010543804,0.0005337708,0.00011484478,0.000060159764,0.00074059755,0.000105684194],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022219756,0.006627201,0.037772708,0.10484572,0.004360451,0.00012346824,0.0000067353867,0.0000018346319,4.727142e-7,0.000038073165,0.0036115083,0.8425896],"study_design_scores_gemma":[0.001089421,0.0022676513,0.010283564,0.21400079,0.013344331,0.000024779838,9.288809e-7,4.6547328e-7,2.392258e-7,0.000007305843,0.7585719,0.0004086236],"about_ca_topic_score_codex":0.000020310707,"about_ca_topic_score_gemma":0.0003724086,"teacher_disagreement_score":0.84218097,"about_ca_system_score_codex":0.0007050824,"about_ca_system_score_gemma":0.0017452155,"threshold_uncertainty_score":0.99967325},"labels":[],"label_agreement":null},{"id":"W2118992221","doi":"10.1016/s0732-8893(01)00224-3","title":"Activity of BMS284756 against 2,681 recent clinical isolates of Haemophilus influenzae and Moraxella catarrhalis: report from The SENTRY Antimicrobial Surveillance Program (2000) in Europe, Canada and the United States","year":2001,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Trovafloxacin; Moraxella catarrhalis; Gatifloxacin; Haemophilus influenzae; Microbiology; Moxifloxacin; Moraxella (Branhamella) catarrhalis; Etest; Levofloxacin; Broth microdilution; Ciprofloxacin; Antibacterial agent; Gemifloxacin; Antimicrobial; Quinolone; Population; Biology; Minimum inhibitory concentration; Medicine; Antibiotics","score_opus":0.011556633244147687,"score_gpt":0.2702710177616594,"score_spread":0.2587143845175117,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118992221","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99455816,0.0018054278,0.0000036670883,0.0022649586,0.00020970442,0.0007405925,0.0003612474,0.000021519612,0.0000347064],"genre_scores_gemma":[0.9791305,0.0183187,0.0000022852266,0.002160521,0.0000588781,0.000022864522,0.00028755737,0.000011550354,0.0000071321847],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983643,0.000532885,0.0005228962,0.00031644208,0.00004252903,0.0002209206],"domain_scores_gemma":[0.9965679,0.002492165,0.00027172756,0.00029134113,0.0002258951,0.00015094955],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042404782,0.00018665244,0.0004755235,0.00006433629,0.00013999213,0.000013670521,0.0000598305,0.000110108704,0.000007842085],"category_scores_gemma":[0.003203212,0.000113318245,0.000044719127,0.00037617012,0.001194497,0.0000341653,0.00008977655,0.0003109372,3.504495e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005260226,0.0004101515,0.9935849,0.00006386578,0.00015494536,0.0002684656,0.00011663223,0.000056579618,0.0020082027,0.0000065308313,0.0009915385,0.0018121719],"study_design_scores_gemma":[0.0030069698,0.00016070862,0.97646433,0.00013855041,0.00016447036,0.00036579836,0.000038587088,0.000118530486,0.00018066003,0.000027291288,0.019196128,0.00013797794],"about_ca_topic_score_codex":0.113007575,"about_ca_topic_score_gemma":0.0941562,"teacher_disagreement_score":0.018851377,"about_ca_system_score_codex":0.000026439595,"about_ca_system_score_gemma":0.00052211003,"threshold_uncertainty_score":0.9223731},"labels":[],"label_agreement":null},{"id":"W2119100503","doi":"10.1093/jac/dkm119","title":"Gemifloxacin once daily for 5 days versus 7 days for the treatment of community-acquired pneumonia: a randomized, multicentre, double-blind study","year":2007,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Gemifloxacin; Clinical endpoint; Adverse effect; Confidence interval; Internal medicine; Community-acquired pneumonia; Randomized controlled trial; Pneumonia; Streptococcus pneumoniae; Intention-to-treat analysis; Surgery; Antibiotics","score_opus":0.06841433344760678,"score_gpt":0.3668738467592338,"score_spread":0.298459513311627,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119100503","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9859385,0.00019925208,0.0059145642,0.0026991076,0.0009728636,0.004152993,0.000023894321,0.000016904114,0.00008193717],"genre_scores_gemma":[0.99678195,0.00081720325,0.0007967419,0.0007383778,0.0006278024,0.000040108687,0.000007353873,0.00005007883,0.00014040338],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9981608,0.00013883376,0.0010359735,0.00012894499,0.00020155586,0.00033390473],"domain_scores_gemma":[0.99602395,0.0021145726,0.0008071581,0.0003864379,0.0005405541,0.00012734637],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018058381,0.00027333404,0.001103607,0.00021604962,0.00041293286,0.000034847126,0.00023173438,0.00012740724,0.0000143899215],"category_scores_gemma":[0.00010348621,0.00016232127,0.0008673411,0.00021690852,0.00022010431,0.00010102739,0.000012519457,0.00021544115,0.0000010263368],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.59947085,0.0063813995,0.0006291409,0.00006389032,0.002470976,0.000010270872,0.008267215,0.00012434508,0.37663412,0.0000110394385,0.0006367589,0.0052999877],"study_design_scores_gemma":[0.84131914,0.008188784,0.0009514536,0.0001020542,0.0016077977,0.00010604198,0.0029758138,0.00010075729,0.11952576,0.000007941179,0.02493544,0.00017903668],"about_ca_topic_score_codex":0.00006404699,"about_ca_topic_score_gemma":0.00009774749,"teacher_disagreement_score":0.25710833,"about_ca_system_score_codex":0.00018693044,"about_ca_system_score_gemma":0.00017989485,"threshold_uncertainty_score":0.6619269},"labels":[],"label_agreement":null},{"id":"W2119325064","doi":"10.1093/jac/dkm523","title":"Characterization of extended-spectrum  -lactamase-producing isolates of Haemophilus parainfluenzae","year":2008,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen Elizabeth II Health Sciences Centre; Dalhousie University","funders":"","keywords":"Haemophilus parainfluenzae; Cefotaxime; Microbiology; Haemophilus influenzae; Plasmid; Amp resistance; Biology; Haemophilus; Virology; Ampicillin; Beta-lactamase; Penicillin; Gene; Antibiotics; Bacteria; Escherichia coli; Genetics","score_opus":0.01641012057820804,"score_gpt":0.2571207293471155,"score_spread":0.24071060876890746,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119325064","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99563885,0.000046916688,0.00032821274,0.003478992,0.00022874562,0.00014214024,0.000009234357,0.000013307947,0.00011362294],"genre_scores_gemma":[0.9971758,0.00083225855,0.00027433026,0.0012904714,0.00030859333,3.6829363e-7,0.000003551578,0.000027419388,0.00008722296],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987498,0.000035940855,0.0007521685,0.00012300524,0.00017413177,0.00016494963],"domain_scores_gemma":[0.9985395,0.000025428004,0.00086019386,0.00019951002,0.00029303168,0.000082351005],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019928163,0.00014586245,0.0005645448,0.0002885222,0.000071178714,0.0000053324993,0.00009531019,0.000106539796,0.0000740437],"category_scores_gemma":[0.000040789986,0.00011725932,0.00028134324,0.00027518536,0.00015532052,0.0001560784,0.000009419249,0.00022894461,0.0000024636931],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000429298,0.00044780842,0.013426096,0.000086230866,0.00016479283,0.000033198958,0.0006627466,0.000016387183,0.9838562,0.000008480653,0.00029630124,0.0005724457],"study_design_scores_gemma":[0.0019894328,0.00064181787,0.13135967,0.00024646078,0.00005687814,0.0019304457,0.000013027429,0.000012842848,0.8599636,0.000014178326,0.0036775784,0.00009409288],"about_ca_topic_score_codex":0.000007686032,"about_ca_topic_score_gemma":6.4503286e-7,"teacher_disagreement_score":0.123892635,"about_ca_system_score_codex":0.000039498864,"about_ca_system_score_gemma":0.00022017016,"threshold_uncertainty_score":0.47816962},"labels":[],"label_agreement":null},{"id":"W2119448650","doi":"10.1001/archinte.167.18.1938","title":"Effect of Pneumococcal Vaccination in Hospitalized Adults With Community-Acquired Pneumonia","year":2007,"lang":"en","type":"article","venue":"Archives of Internal Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":143,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Odds ratio; Propensity score matching; Intensive care unit; Confidence interval; Pneumococcal polysaccharide vaccine; Vaccination; Internal medicine; Population; Pneumococcal vaccine; Pneumococcal pneumonia; Pediatrics; Streptococcus pneumoniae; Pneumococcal disease; Immunology","score_opus":0.006532559414125505,"score_gpt":0.2906177907752282,"score_spread":0.2840852313611027,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119448650","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9875156,0.000080417674,0.00072188943,0.0003351271,0.00013092809,0.00049567147,0.0000032740254,0.000026907328,0.010690178],"genre_scores_gemma":[0.99958724,0.00003695377,0.00006993745,0.000109388326,0.00007643102,0.00001314612,0.000013640685,0.00001957975,0.0000736658],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984778,0.0002505257,0.00061965646,0.0001481797,0.00027985277,0.00022396244],"domain_scores_gemma":[0.99811095,0.0011058503,0.00026360538,0.00031155677,0.00007131589,0.00013670864],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007432001,0.00018692414,0.0006265687,0.0005830003,0.000040717543,0.0000015270336,0.00016523145,0.00005707491,0.00003736954],"category_scores_gemma":[0.00038506277,0.000117068324,0.00009339167,0.00028631577,0.00032812287,0.000056709672,0.000048941816,0.00035867002,0.0000017607458],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0054981555,0.0003211691,0.44223395,0.00077693484,0.00009786198,0.00008591111,0.003512008,0.00000465183,0.52272743,0.000053518073,0.0000034557527,0.024684995],"study_design_scores_gemma":[0.00883221,0.017402627,0.8983834,0.0042884047,0.00009531371,0.00017184911,0.00046155436,0.00012210092,0.07000222,0.0000558134,0.000091932765,0.000092597],"about_ca_topic_score_codex":0.0006401602,"about_ca_topic_score_gemma":0.0002188749,"teacher_disagreement_score":0.45614943,"about_ca_system_score_codex":0.000030682462,"about_ca_system_score_gemma":0.000030273657,"threshold_uncertainty_score":0.47739077},"labels":[],"label_agreement":null},{"id":"W2119954264","doi":"10.1128/jcm.01439-12","title":"Standardized Methods and Quality Control Limits for Agar and Broth Microdilution Susceptibility Testing of Mycoplasma pneumoniae, Mycoplasma hominis, and Ureaplasma urealyticum","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"Pfizer","keywords":"Ureaplasma urealyticum; Mycoplasma hominis; Broth microdilution; Microbiology; Mycoplasmataceae; Ureaplasma; Mycoplasma; Mycoplasma pneumoniae; Biology; Agar; Mollicutes; Medicine; Antibiotics; Bacteria; Minimum inhibitory concentration; Internal medicine; Pneumonia","score_opus":0.1151699973721247,"score_gpt":0.4649987640286372,"score_spread":0.3498287666565125,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119954264","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99333656,0.0009898595,0.0031742426,0.0010783946,0.0006949775,0.0005017397,0.00015097047,0.000013537108,0.000059748632],"genre_scores_gemma":[0.97448456,0.00034636285,0.02419339,0.0005236767,0.00039278303,0.0000050213184,0.000004305024,0.00001845794,0.000031464933],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99591076,0.001198707,0.002153019,0.0002936808,0.000071246766,0.00037256422],"domain_scores_gemma":[0.9881709,0.009122499,0.0014728159,0.00019725224,0.0006266694,0.00040982713],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.008402335,0.00023187071,0.0016765068,0.00014533784,0.00012828094,0.000014946993,0.0000655579,0.0004814805,0.00000772725],"category_scores_gemma":[0.012132865,0.00016689226,0.00026867588,0.0001107528,0.0007608373,0.00012453747,0.000048464233,0.0005724369,6.3753663e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012817049,0.00024459796,0.45305938,0.00017828446,0.00022407513,0.0000016030149,0.000074720585,5.212552e-7,0.5385596,0.000054855984,0.00012265865,0.0061979783],"study_design_scores_gemma":[0.035324294,0.0126239415,0.84491926,0.00058002246,0.0024239062,0.014124376,0.00029321335,0.00012021646,0.04509366,0.00051966304,0.04338781,0.0005896137],"about_ca_topic_score_codex":0.000007990626,"about_ca_topic_score_gemma":0.000021220545,"teacher_disagreement_score":0.49346596,"about_ca_system_score_codex":0.000038290676,"about_ca_system_score_gemma":0.00024577396,"threshold_uncertainty_score":0.99618834},"labels":[],"label_agreement":null},{"id":"W2120233207","doi":"10.1086/322021","title":"Microbiological and Inflammatory Factors Associated with the Development of Pneumococcal Pneumonia","year":2001,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":116,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Streptococcus pneumoniae; Pneumonia; Pneumococcal pneumonia; Immunology; Tumor necrosis factor alpha; Inflammation; Macrophage inflammatory protein; Lung; Biology; Pathogenesis; Microbiology; Immune system; Sepsis; Bacterial pneumonia; Medicine; Chemokine; Antibiotics; Internal medicine","score_opus":0.01702212899199541,"score_gpt":0.24705446141662002,"score_spread":0.23003233242462462,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120233207","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99885714,0.00023190632,0.00004572915,0.0003658931,0.00006884314,0.0001671319,0.000004087454,0.000022453582,0.0002368381],"genre_scores_gemma":[0.9996773,0.00007559186,0.0000016530572,0.00014048742,0.000059621914,0.0000029189898,0.000001603577,0.000010406878,0.000030442032],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990619,0.00016745561,0.00036375958,0.0000670339,0.00018175585,0.00015808287],"domain_scores_gemma":[0.99876404,0.00037301338,0.0003897621,0.0001185508,0.00022577155,0.00012885038],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000310653,0.00014019833,0.00028259397,0.00009239892,0.0002780118,0.00001320227,0.000091069116,0.00005951588,0.000025172083],"category_scores_gemma":[0.00020750678,0.000055511682,0.00009750033,0.00018916502,0.00031063674,0.000059889182,0.000033182125,0.0002687315,0.0000014266508],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009723829,0.00027893815,0.8741586,0.000014747171,0.00035277774,0.000016960177,0.00052135455,0.000031953397,0.1241989,0.000009998206,0.000034675984,0.00028383147],"study_design_scores_gemma":[0.0008221713,0.00059952354,0.9945606,0.000114349124,0.00038793276,0.0004213397,0.00059448456,0.0000025447282,0.0012596585,0.000022462107,0.0011389225,0.00007598924],"about_ca_topic_score_codex":0.0000021547662,"about_ca_topic_score_gemma":0.00004224683,"teacher_disagreement_score":0.12293924,"about_ca_system_score_codex":0.00009332944,"about_ca_system_score_gemma":0.00025785467,"threshold_uncertainty_score":0.22637007},"labels":[],"label_agreement":null},{"id":"W2120513692","doi":"10.1111/j.1447-0594.2005.00279.x","title":"Community‐acquired pneumonia in older adults","year":2005,"lang":"en","type":"article","venue":"Geriatrics and gerontology international/Geriatrics & gerontology international","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Etiology; Intensive care medicine; Nursing homes; Presentation (obstetrics); Long-term care; Gerontology; Nursing; Internal medicine; Surgery","score_opus":0.02243879019044666,"score_gpt":0.3085819630346883,"score_spread":0.2861431728442417,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120513692","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94481826,0.0011248369,0.0008971797,0.033750303,0.004894898,0.0006527766,0.000100367666,0.0001939445,0.01356744],"genre_scores_gemma":[0.9900801,0.0012141463,0.0014784064,0.0033681956,0.0013302545,0.00017377346,0.00030511495,0.000058223453,0.0019917963],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9963002,0.00030711302,0.0012874112,0.00079399534,0.0005677121,0.0007435395],"domain_scores_gemma":[0.9976368,0.00035818247,0.00049439067,0.0005714084,0.0006235986,0.00031560205],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007757714,0.00053156726,0.00079671794,0.0014097333,0.00031766528,0.00010222376,0.00071517733,0.0007338687,0.0009603967],"category_scores_gemma":[0.000519044,0.0005405756,0.00026035897,0.000438171,0.0003279826,0.00048771797,0.00035512654,0.0009456296,0.00014999411],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024132826,0.005863722,0.8453303,0.00019528283,0.0016770732,0.0007908554,0.009325684,0.0002638336,0.009772676,0.016258413,0.013012121,0.09509675],"study_design_scores_gemma":[0.010213503,0.00046537403,0.8143275,0.00009190974,0.00019611295,0.0027785301,0.0009974221,0.003438936,0.00015058312,0.0005944797,0.16596083,0.00078484317],"about_ca_topic_score_codex":0.0006139723,"about_ca_topic_score_gemma":0.0026409235,"teacher_disagreement_score":0.1529487,"about_ca_system_score_codex":0.00063877593,"about_ca_system_score_gemma":0.00023269177,"threshold_uncertainty_score":0.99995285},"labels":[],"label_agreement":null},{"id":"W2120717094","doi":"10.1128/aac.00237-11","title":"Susceptibility of <i>Streptococcus pneumoniae</i> to Fluoroquinolones in Canada","year":2011,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta; Public Health Ontario; University of Toronto; Public Health Agency of Canada; Toronto Public Health; Mount Sinai Hospital","funders":"Bayer HealthCare; Pfizer","keywords":"Levofloxacin; Moxifloxacin; Streptococcus pneumoniae; Ciprofloxacin; Medicine; Pneumococcal infections; Respiratory tract infections; Microbiology; Antibacterial agent; Internal medicine; Antibiotics; Biology; Respiratory system","score_opus":0.022178135230934124,"score_gpt":0.23943218298621358,"score_spread":0.21725404775527946,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120717094","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971327,0.000004643602,0.0000048535844,0.001769679,0.00010004589,0.0003115397,0.000014716814,0.000011224368,0.0006505935],"genre_scores_gemma":[0.9908842,0.000099567296,0.00004398538,0.008854138,0.00002205693,0.0000061466562,0.000002307636,0.000011774914,0.00007586364],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999291,0.000015532158,0.00023304275,0.0001992021,0.00007427162,0.00018695247],"domain_scores_gemma":[0.9996236,0.0000073691563,0.000046636123,0.00017918089,0.00004007427,0.000103157894],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000047666468,0.00011308901,0.000248168,0.000061895145,0.00003150469,0.0000031687207,0.00005469247,0.000046971858,0.00017121587],"category_scores_gemma":[0.000005610058,0.00009511286,0.000042216456,0.00015235657,0.000047238467,0.000028527613,0.000020007423,0.00008102012,0.0000035667865],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000045423152,0.00016024003,0.82717425,0.000039891635,0.000023210432,0.00001590094,0.0004222954,6.201246e-7,0.16651694,0.000005313451,0.0023039992,0.0032919333],"study_design_scores_gemma":[0.00076977396,0.00014381445,0.9167158,0.000056738576,0.000010846695,0.0000135406135,0.00007365107,0.0000031052307,0.071972616,0.000007010472,0.010136457,0.0000966512],"about_ca_topic_score_codex":0.27961344,"about_ca_topic_score_gemma":0.49081773,"teacher_disagreement_score":0.21120428,"about_ca_system_score_codex":0.000064517975,"about_ca_system_score_gemma":0.00024131537,"threshold_uncertainty_score":0.72518367},"labels":[],"label_agreement":null},{"id":"W2120831321","doi":"10.1128/aac.49.2.846-848.2005","title":"Stability of Fluoroquinolone Resistance in <i>Streptococcus pneumoniae</i> Clinical Isolates and Laboratory-Derived Mutants","year":2005,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Manitoba","funders":"Canadian Institutes of Health Research; AstraZeneca Canada; University of Manitoba; AstraZeneca; Pfizer; Bristol-Myers Squibb; Abbott Laboratories","keywords":"Streptococcus pneumoniae; Microbiology; Biology; Efflux; Streptococcaceae; Mutant; Genotype; Drug resistance; Antibacterial agent; Antibiotics; Phenotype; Antibiotic resistance; Streptococcus; Bacteria; Gene; Genetics","score_opus":0.020501601323042157,"score_gpt":0.2996880888877574,"score_spread":0.2791864875647152,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120831321","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939195,0.00012537057,0.00000617475,0.00527184,0.00005582003,0.00033799242,0.00003707148,0.00002827058,0.00021798465],"genre_scores_gemma":[0.9917964,0.0024808508,0.0001515851,0.0054181903,0.000081062964,0.0000055481128,0.000003681889,0.00001811187,0.000044596],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988489,0.0000613821,0.00048626744,0.00032538708,0.00006474142,0.00021329425],"domain_scores_gemma":[0.99943644,0.00004177939,0.00012451614,0.00021537216,0.00007396744,0.00010792039],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020152218,0.00016145312,0.00042335244,0.000060030554,0.00006453631,0.000014468057,0.00005113019,0.00015216078,0.00006487128],"category_scores_gemma":[0.000024988754,0.00013822853,0.00006461516,0.0001698448,0.00029170458,0.00008927516,0.000025719988,0.00019317275,0.0000033562953],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001308398,0.00045041952,0.590997,0.00008183313,0.00004560785,0.0000057733637,0.00033355606,2.0457645e-7,0.40439245,0.000007885627,0.00064031925,0.002914106],"study_design_scores_gemma":[0.0038573456,0.00022656703,0.867825,0.00019621696,0.000033013643,0.000010045381,0.000048500882,0.00002486194,0.08593911,0.000019141995,0.04163297,0.00018727167],"about_ca_topic_score_codex":0.000009464156,"about_ca_topic_score_gemma":0.00009658865,"teacher_disagreement_score":0.31845334,"about_ca_system_score_codex":0.000021984282,"about_ca_system_score_gemma":0.00006405935,"threshold_uncertainty_score":0.5636796},"labels":[],"label_agreement":null},{"id":"W2121048070","doi":"10.1086/596308","title":"Severe Community‐Acquired Pneumonia (CAP) and the Infectious Diseases Society of America/American Thoracic Society CAP Guidelines Prediction Rule: Validated or Not","year":2009,"lang":"en","type":"letter","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Community-acquired pneumonia; Pneumonia; Intensive care medicine; Internal medicine","score_opus":0.07921942838086074,"score_gpt":0.39898582119534887,"score_spread":0.31976639281448815,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121048070","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.57340944,0.0033134918,0.0009815743,0.40015906,0.0036687253,0.006334892,0.007584885,0.0037481848,0.00079978426],"genre_scores_gemma":[0.22354037,0.0143227745,0.00008360026,0.75010186,0.007672872,0.00048731707,0.0022501664,0.00028149804,0.0012595096],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99165285,0.0027135133,0.0027016872,0.0010897588,0.00096489844,0.00087731535],"domain_scores_gemma":[0.9895984,0.0045938008,0.0019944871,0.0018643691,0.0013054169,0.0006435156],"candidate_categories":["metaepi_narrow","sts","research_integrity"],"consensus_categories":["sts"],"category_scores_codex":[0.0009006758,0.001158133,0.003079868,0.00020660592,0.0014403157,0.00019308948,0.0004778859,0.0012370044,0.00012987368],"category_scores_gemma":[0.0031531954,0.00075759116,0.0031597747,0.0012876848,0.005931178,0.00025927482,0.00038483617,0.0037287239,0.000031989723],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00060653745,0.0021449511,0.18560618,0.0013585959,0.0031365922,0.00007676341,0.0002439427,0.00009674268,0.0001700434,0.000002785831,0.7806241,0.025932752],"study_design_scores_gemma":[0.01185442,0.0057280185,0.401887,0.0016408382,0.01553769,0.0006378966,0.0007423389,0.0021738007,0.000023950575,0.0006192637,0.5572727,0.001882126],"about_ca_topic_score_codex":0.0007739239,"about_ca_topic_score_gemma":0.000047367244,"teacher_disagreement_score":0.34994283,"about_ca_system_score_codex":0.00026919844,"about_ca_system_score_gemma":0.0010972965,"threshold_uncertainty_score":0.9998597},"labels":[],"label_agreement":null},{"id":"W2121550854","doi":"10.1093/jac/dkv060","title":"Multiple mutations and increased RNA expression in tetracycline-resistant <i>Streptococcus pneumoniae</i> as determined by genome-wide DNA and mRNA sequencing","year":2015,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval","funders":"Canadian Institutes of Health Research; McGill University","keywords":"Biology; Tetracycline; Gene; Genetics; Mutant; Coding region; Molecular biology; 23S ribosomal RNA; Microbiology; RNA","score_opus":0.014110824839193643,"score_gpt":0.2592507045343843,"score_spread":0.24513987969519066,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121550854","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967797,0.00021208642,0.00008333677,0.0023442835,0.000108003456,0.0002984432,0.000016407796,0.000017351824,0.00014040095],"genre_scores_gemma":[0.9960414,0.00035133492,0.00037285176,0.0029829398,0.00014486072,0.0000035941657,0.0000066163416,0.00003306178,0.000063295454],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986542,0.000077429264,0.0006302344,0.00020157808,0.0002014826,0.00023508855],"domain_scores_gemma":[0.99876964,0.00014792038,0.00036603963,0.00014021216,0.00022535703,0.00035083506],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034105912,0.00020876099,0.00045581296,0.00026756318,0.00010014037,0.000054482458,0.00007623433,0.00013779766,0.0000134442835],"category_scores_gemma":[0.00030777205,0.00016801406,0.000095542324,0.00019288997,0.00012717403,0.00023298501,0.00002109821,0.0003486964,0.0000024590965],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034599536,0.0001737614,0.059142597,0.00003437018,0.00003867373,0.00016230236,0.00063454633,0.000013276779,0.9380864,1.7740861e-7,0.0007589646,0.00060894847],"study_design_scores_gemma":[0.011196142,0.00079999754,0.035349786,0.0004389395,0.00007416413,0.0010132365,0.00037654207,0.000079515055,0.9419045,0.00004763425,0.008448545,0.00027103728],"about_ca_topic_score_codex":0.000043219447,"about_ca_topic_score_gemma":0.00002292864,"teacher_disagreement_score":0.023792813,"about_ca_system_score_codex":0.00015952993,"about_ca_system_score_gemma":0.00032486187,"threshold_uncertainty_score":0.68514144},"labels":[],"label_agreement":null},{"id":"W2121567540","doi":"10.1093/infdis/jir657","title":"Sex-Based Differences in Susceptibility to Respiratory and Systemic Pneumococcal Disease in Mice","year":2011,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"AstraZeneca","keywords":"Pneumococcal disease; Respiratory system; Immunology; Medicine; Disease; Streptococcus pneumoniae; Respiratory disease; Systemic disease; Pneumococcal infections; Biology; Immunopathology; Internal medicine; Microbiology; Lung; Antibiotics","score_opus":0.027271736475752262,"score_gpt":0.26897532764966875,"score_spread":0.2417035911739165,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121567540","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99844426,0.00058016164,0.000041391282,0.0002030795,0.00014646366,0.00041642584,0.0000097251195,0.000022811393,0.00013570464],"genre_scores_gemma":[0.99915755,0.000044364817,0.000002079958,0.0006631195,0.00009267429,0.000017498453,3.0073812e-7,0.000012444793,0.000009972773],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99851054,0.00041471282,0.0005130541,0.00014304023,0.00020869827,0.00020993603],"domain_scores_gemma":[0.99882984,0.00025089993,0.00017304308,0.00020992801,0.00011544946,0.00042085303],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005359247,0.00015692916,0.00038048843,0.0004196698,0.00008010567,0.000014202988,0.00010791192,0.000050500785,0.000033485325],"category_scores_gemma":[0.0004729203,0.0000975521,0.00010314344,0.00034191154,0.00014772131,0.00010000735,0.000031020056,0.00029843725,0.0000061060487],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047062754,0.00069599657,0.9860186,0.00013806514,0.000023983186,0.00013578382,0.0005569139,0.00007725038,0.0115810055,0.000009103348,0.000014776466,0.0002778683],"study_design_scores_gemma":[0.001356093,0.0008510042,0.99626756,0.00041314447,0.00015641138,0.000087509856,0.00028988768,0.000038388658,0.0002563884,0.00015102004,0.000026203294,0.00010642013],"about_ca_topic_score_codex":0.00010718464,"about_ca_topic_score_gemma":0.00027325397,"teacher_disagreement_score":0.011324617,"about_ca_system_score_codex":0.00015382259,"about_ca_system_score_gemma":0.00036640352,"threshold_uncertainty_score":0.39780593},"labels":[],"label_agreement":null},{"id":"W2122011804","doi":"10.1093/oxfordjournals.jac.a020892","title":"Gemifloxacin: survival of the fittest","year":2000,"lang":"en","type":"review","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Gemifloxacin; Streptococcus pneumoniae; Penicillin; Antibiotic resistance; Medicine; Antimicrobial; Antibiotics; Respiratory tract infections; Incidence (geometry); Pneumococcal infections; Drug resistance; Antibacterial agent; Microbiology; Biology; Respiratory system; Internal medicine","score_opus":0.03349187465494536,"score_gpt":0.32642812378375585,"score_spread":0.2929362491288105,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122011804","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0024269102,0.9910374,0.000010144256,0.002087886,0.0017970984,0.0006043621,0.000046571167,0.00001603896,0.0019735864],"genre_scores_gemma":[0.00009291555,0.99708074,0.000042082742,0.00093034975,0.0009653683,9.360158e-7,0.0000027470894,0.000061738276,0.00082312484],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99807453,0.00013479892,0.0011493948,0.00014316612,0.00029396155,0.0002041676],"domain_scores_gemma":[0.9979507,0.00009411044,0.0012797798,0.00038571746,0.00019020218,0.00009952433],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028633955,0.00031966117,0.0020465124,0.00023346591,0.00007559845,0.000017345907,0.00033995736,0.00034239667,0.00030203164],"category_scores_gemma":[0.000035383775,0.00017075999,0.0019641581,0.00045012494,0.0001635797,0.000048474532,0.000020819778,0.00087873416,0.000016503705],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015721681,0.0010727096,0.00033802362,0.011302704,0.0020694088,0.000101003,0.00015490173,0.0000060112143,0.01158694,0.000010952907,0.044839658,0.92836046],"study_design_scores_gemma":[0.0008694409,0.0001785755,0.000053574346,0.011865642,0.000905893,0.0023292003,0.0000032385221,1.4453241e-7,0.00075400627,0.0000025113177,0.9828936,0.00014417086],"about_ca_topic_score_codex":0.0000022673835,"about_ca_topic_score_gemma":0.0000010231925,"teacher_disagreement_score":0.93805397,"about_ca_system_score_codex":0.000091435766,"about_ca_system_score_gemma":0.0009485078,"threshold_uncertainty_score":0.696339},"labels":[],"label_agreement":null},{"id":"W2122118888","doi":"10.1086/591128","title":"Large Community Outbreak of<i>Streptococcus pneumoniae</i>Serotype 5 Invasive Infection in an Impoverished, Urban Population","year":2008,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Vancouver Coastal Health; St. Paul's Hospital; University of British Columbia; Providence Health Care","funders":"Providence Health Care","keywords":"Streptococcus pneumoniae; Outbreak; Medicine; Pneumococcal disease; Serotype; Population; Pneumococcal infections; Disease; Environmental health; Virology; Internal medicine; Microbiology; Antibiotics; Biology","score_opus":0.05540832762875629,"score_gpt":0.3679518546812926,"score_spread":0.3125435270525363,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122118888","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99727666,0.00006136234,0.000038126083,0.000060618833,0.0005624438,0.0007869614,0.000080790334,0.0002790509,0.0008539798],"genre_scores_gemma":[0.9982052,0.00030361535,0.0000016687856,0.00076243654,0.0003304137,0.00009858254,0.00021551808,0.000039554172,0.000042998796],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9970216,0.00092364516,0.0010814177,0.00036561769,0.00025207686,0.0003556266],"domain_scores_gemma":[0.9976133,0.00056542194,0.00037624637,0.0007340432,0.00027305205,0.00043792647],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00044641746,0.00027284183,0.00075719756,0.0003076123,0.00042127908,0.000018472667,0.00010592745,0.00032341684,0.00009280785],"category_scores_gemma":[0.0017465184,0.00025449568,0.00042412078,0.00061719236,0.00028127272,0.00038988254,0.0000999819,0.0008961469,0.000045451376],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000057430087,0.0054460866,0.99251986,0.00011342162,0.00007562106,0.000046939535,0.00022272764,0.000075376156,0.0007318881,0.00004917574,0.0002732777,0.00038821416],"study_design_scores_gemma":[0.0026650273,0.0021675734,0.99351203,0.00012504455,0.00017752903,0.00003323441,0.00006433208,0.00007643916,0.00009359123,0.00026993162,0.00057716365,0.0002380808],"about_ca_topic_score_codex":0.0008718302,"about_ca_topic_score_gemma":0.0033264307,"teacher_disagreement_score":0.0032785132,"about_ca_system_score_codex":0.00014779808,"about_ca_system_score_gemma":0.00029445157,"threshold_uncertainty_score":0.9999907},"labels":[],"label_agreement":null},{"id":"W2122234707","doi":"10.1086/313608","title":"Which Pneumococcal Serogroups Cause the Most Invasive Disease: Implications for Conjugate Vaccine Formulation and Use, Part I","year":2000,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":872,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Pan American Health Organization","keywords":"Medicine; Pneumococcal disease; Pneumococcal conjugate vaccine; Pneumococcal infections; Conjugate vaccine; Streptococcus pneumoniae; Conjugate; Virology; Immunology; Intensive care medicine; Immunogenicity; Microbiology; Antibiotics; Antibody; Biology","score_opus":0.054415663105259325,"score_gpt":0.3635913983845034,"score_spread":0.3091757352792441,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122234707","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9876464,0.00020749247,0.00011410546,0.009080512,0.000249285,0.0017718644,0.00041424,0.0002571706,0.0002589074],"genre_scores_gemma":[0.9927033,0.0013400413,0.000003220802,0.00387095,0.0006966893,0.0006678102,0.00028835222,0.000038844475,0.00039075565],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983075,0.00014172426,0.0006481597,0.0004675885,0.00011332585,0.0003216568],"domain_scores_gemma":[0.9963613,0.0019183873,0.0001403509,0.0005596502,0.0003606169,0.0006596681],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019265126,0.00023291283,0.00038205055,0.00006477861,0.0006743747,0.00011625695,0.00007826696,0.00013913398,0.00015300754],"category_scores_gemma":[0.0020331608,0.00016147553,0.000244514,0.00037288698,0.00015273233,0.0002767465,0.000039578645,0.00024838757,0.00004498607],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013213014,0.0007297766,0.9904169,0.00006750022,0.00020575852,0.0000033812862,0.000014598022,0.00008200339,0.00017512638,0.0009513978,0.0025903233,0.0046311384],"study_design_scores_gemma":[0.0019589593,0.00050942774,0.94603616,0.00006700549,0.000992636,0.000021780113,0.000008530528,0.0002487538,0.0000071059712,0.0015654344,0.04839898,0.00018523438],"about_ca_topic_score_codex":0.00001218046,"about_ca_topic_score_gemma":0.00029255176,"teacher_disagreement_score":0.045808658,"about_ca_system_score_codex":0.000045147808,"about_ca_system_score_gemma":0.00028538838,"threshold_uncertainty_score":0.6584781},"labels":[],"label_agreement":null},{"id":"W2122436569","doi":"10.1186/1471-2334-13-357","title":"Nasopharyngeal carriage of individual Streptococcus pneumoniae serotypes during pediatric radiologically confirmed community acquired pneumonia following PCV7 introduction in Switzerland","year":2013,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Streptococcus pneumoniae; Serotype; Medicine; Pneumonia; Community-acquired pneumonia; Pneumococcal conjugate vaccine; Vaccination; Carriage; Medical microbiology; Internal medicine; Immunology; Pediatrics; Microbiology; Biology; Antibiotics; Pathology","score_opus":0.014228837225474524,"score_gpt":0.25470644280316956,"score_spread":0.24047760557769504,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122436569","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968004,0.00028163096,0.000011946487,0.00011691267,0.0005912031,0.0015749462,0.00005597098,0.00030173108,0.00026521567],"genre_scores_gemma":[0.99847,0.00005966848,0.0000084459825,0.000096042095,0.0007422658,0.00043210317,0.00009787478,0.000041295196,0.000052287596],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9973401,0.0006010765,0.00074148603,0.00041467536,0.00038883524,0.0005138156],"domain_scores_gemma":[0.9983317,0.00031688908,0.00028838162,0.0005646761,0.00017715845,0.0003211752],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003091719,0.00037040428,0.00075144204,0.0005523486,0.00041857554,0.00006889494,0.00020661225,0.00023554442,0.00020021178],"category_scores_gemma":[0.00066054816,0.0003203282,0.00037126808,0.0006870453,0.00015964157,0.00034109864,0.0001400968,0.00048470785,0.000044821867],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000056487286,0.00091169117,0.9388719,0.00038251927,0.00014092255,0.00003531871,0.00030736355,0.00034278978,0.058680676,0.000013689139,0.00007735407,0.00017926215],"study_design_scores_gemma":[0.003491242,0.00069141964,0.99363345,0.000060622897,0.000439824,0.00006115996,0.0002947026,0.000041637973,0.00082492165,0.00012413618,0.000039393413,0.00029748998],"about_ca_topic_score_codex":0.0002915234,"about_ca_topic_score_gemma":0.00022816824,"teacher_disagreement_score":0.057855755,"about_ca_system_score_codex":0.0001741189,"about_ca_system_score_gemma":0.00027288008,"threshold_uncertainty_score":0.9999249},"labels":[],"label_agreement":null},{"id":"W2122839188","doi":"10.1136/ebn.11.3.78","title":"Review: antibiotics are only slightly more effective than placebo for clinically diagnosed acute rhinosinusitis in adultsCommentary","year":2008,"lang":"en","type":"letter","venue":"Evidence-Based Nursing","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Medicine; Placebo; Antibiotics; Internal medicine; Randomized controlled trial; Meta-analysis; Clinical trial; MEDLINE; Sinusitis; Pediatrics; Surgery; Alternative medicine; Pathology","score_opus":0.03682098055307373,"score_gpt":0.3587067839555119,"score_spread":0.3218858034024382,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122839188","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.019060232,0.022119569,0.0005916422,0.94680166,0.0023710213,0.008349677,0.00037869468,0.00023528958,0.0000921898],"genre_scores_gemma":[0.00937787,0.022813769,0.0007907805,0.96101475,0.0045730867,0.00019748212,0.0008608781,0.00020299849,0.00016837085],"study_design_codex":"not_applicable","study_design_gemma":"systematic_review","domain_scores_codex":[0.9950528,0.0008113902,0.0013477687,0.0011774951,0.0006877346,0.0009227841],"domain_scores_gemma":[0.9929612,0.0045202035,0.0008728415,0.0009897888,0.00040307335,0.00025285728],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0007475058,0.0008429072,0.0019159035,0.000628754,0.00035575934,0.00005340531,0.0003667804,0.0012131301,0.000026849413],"category_scores_gemma":[0.0015271249,0.0007506458,0.0009815703,0.0006648896,0.00048092759,0.00028515526,0.000036852998,0.0030523916,0.000038894177],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005922793,0.00049163436,0.040412538,0.0051087323,0.0002515066,0.004622897,0.00017059213,0.000010541396,0.00016951979,6.0788784e-7,0.9409453,0.0072238273],"study_design_scores_gemma":[0.008637965,0.0045367726,0.086435,0.6193187,0.003996512,0.0011322176,0.000082582534,0.00026440714,0.0010286152,0.000018156665,0.2728852,0.0016638603],"about_ca_topic_score_codex":0.00006198171,"about_ca_topic_score_gemma":0.000022728338,"teacher_disagreement_score":0.6680601,"about_ca_system_score_codex":0.001085977,"about_ca_system_score_gemma":0.0010186807,"threshold_uncertainty_score":0.99949443},"labels":[],"label_agreement":null},{"id":"W2122918103","doi":"10.1086/313609","title":"The Contribution of Specific Pneumococcal Serogroups to Different Disease Manifestations: Implications for Conjugate Vaccine Formulation and Use, Part II","year":2000,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":336,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Streptococcus pneumoniae; Meningitis; Pneumococcal conjugate vaccine; Conjugate vaccine; Pneumonia; Pneumococcal infections; Otitis; Immunology; Bacteremia; Pneumolysin; Disease; Conjugate; Cerebrospinal fluid; Pneumococcal pneumonia; Pneumococcal disease; Virology; Pediatrics; Microbiology; Antibody; Immunization; Antibiotics; Internal medicine; Biology; Surgery","score_opus":0.041291974991424236,"score_gpt":0.35734389542995026,"score_spread":0.31605192043852604,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122918103","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9916487,0.0002336855,0.0006985781,0.0047485647,0.0002281679,0.001875147,0.00040658077,0.000117240445,0.00004336421],"genre_scores_gemma":[0.99672353,0.0012610998,0.000004812405,0.00067122775,0.00031506797,0.0005514946,0.00026177714,0.000020346994,0.00019063735],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99848944,0.00010103342,0.00073687144,0.00032165536,0.00010537256,0.00024563837],"domain_scores_gemma":[0.9972793,0.0013208997,0.00014786873,0.00037871997,0.0003362406,0.0005369806],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016891229,0.00017004048,0.00032999745,0.000066842076,0.0007617175,0.000056557285,0.00005531087,0.00007879217,0.000048002963],"category_scores_gemma":[0.00090059545,0.00011775581,0.0002521437,0.00017993979,0.000117114076,0.0001415026,0.000033335997,0.00011907004,0.000011660094],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034650794,0.0010585729,0.97723186,0.000031356678,0.00010467306,0.0000015852756,0.000012726417,0.000074364885,0.00054710783,0.007095387,0.001021721,0.012474113],"study_design_scores_gemma":[0.0017962562,0.0009280444,0.9369282,0.00006225728,0.00035283554,0.0000066855014,0.000006525384,0.0001764963,0.000020912985,0.0029164369,0.056684207,0.00012111149],"about_ca_topic_score_codex":0.000002698644,"about_ca_topic_score_gemma":0.000041974585,"teacher_disagreement_score":0.055662487,"about_ca_system_score_codex":0.000050772764,"about_ca_system_score_gemma":0.00007610608,"threshold_uncertainty_score":0.58585924},"labels":[],"label_agreement":null},{"id":"W2123302553","doi":"10.1086/606047","title":"Pneumococcal Conjugate Vaccine, Polysaccharide Vaccine, or Both for Adults? We’re Not There Yet","year":2009,"lang":"en","type":"letter","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Conjugate; Virology; Conjugate vaccine; Pneumococcal infections; Streptococcus pneumoniae; Pneumococcal polysaccharide vaccine; Microbiology; Immunology; Immunogenicity; Pneumococcal disease; Antigen; Antibiotics; Biology","score_opus":0.049066384691510985,"score_gpt":0.36590236118344893,"score_spread":0.31683597649193795,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123302553","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.14685023,0.0021705432,0.00029310843,0.82126224,0.011080784,0.008985696,0.0038732265,0.003163199,0.0023209855],"genre_scores_gemma":[0.09400144,0.002848126,0.000014865595,0.87031317,0.022640403,0.000978844,0.00097285013,0.00039837777,0.007831936],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9938133,0.0004072881,0.002256667,0.001697225,0.00056946947,0.0012560455],"domain_scores_gemma":[0.9929089,0.0031714994,0.0009287373,0.0015163682,0.0005393838,0.00093511905],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.00035766838,0.0012132794,0.0026528784,0.00045338276,0.0005085499,0.00018083351,0.0004653231,0.0023681046,0.0013257887],"category_scores_gemma":[0.0028129944,0.00087873166,0.002411507,0.0004925502,0.00018056366,0.00020940407,0.00013180719,0.003471239,0.0004426593],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011907932,0.0017975299,0.059097726,0.001270712,0.0010636011,0.0013681103,0.000022341304,0.000004711905,0.00012535049,0.000027035363,0.9259878,0.008044317],"study_design_scores_gemma":[0.008831529,0.0057132402,0.119320475,0.0013046346,0.0031703033,0.00015982514,0.000030833573,0.00009782911,0.000030410367,0.00041532784,0.859793,0.0011325838],"about_ca_topic_score_codex":0.000039368177,"about_ca_topic_score_gemma":0.00015313439,"teacher_disagreement_score":0.066194765,"about_ca_system_score_codex":0.00021716706,"about_ca_system_score_gemma":0.0011915461,"threshold_uncertainty_score":0.9995871},"labels":[],"label_agreement":null},{"id":"W2123305370","doi":"10.1503/cmaj.070221","title":"Pneumococcal vaccination and risk of myocardial infarction","year":2008,"lang":"en","type":"article","venue":"Canadian Medical Association Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":113,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Medicine; Myocardial infarction; Vaccination; Odds ratio; Confidence interval; Pneumococcal vaccine; Internal medicine; Infarction; Pediatrics; Immunology; Streptococcus pneumoniae","score_opus":0.006920307607437242,"score_gpt":0.23130149634061017,"score_spread":0.22438118873317292,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123305370","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9894113,0.000067557594,0.00006637813,0.0071776574,0.0004922047,0.0000849865,0.000010665422,0.000012053575,0.0026772218],"genre_scores_gemma":[0.9963036,0.0013093029,0.000019624063,0.0012853817,0.0009101497,0.0000029188222,0.0000035196867,0.000007628594,0.0001578677],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99863285,0.0001334941,0.00030601904,0.000086059044,0.0006441928,0.00019741504],"domain_scores_gemma":[0.9983472,0.000090087255,0.00019584906,0.000055792152,0.0003731937,0.00093788246],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007220222,0.00007007252,0.00018621169,0.00024634565,0.00032646212,0.000010403818,0.000034898403,0.00027785954,0.00066266704],"category_scores_gemma":[0.0017038633,0.00006140883,0.000090135836,0.00018973301,0.000036001467,0.00009217522,0.000005920431,0.00067518116,0.00002322182],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000006295712,0.000024062787,0.9825855,0.0000052739065,0.00015531108,0.000082039725,0.00018766464,0.000003349069,0.00039608203,0.000032773696,0.004005919,0.012515739],"study_design_scores_gemma":[0.0008663008,0.00011063151,0.9121781,0.000017499851,0.00007164269,0.002241252,0.000059212456,0.00011390391,0.000031999145,0.000040466144,0.08421661,0.000052408708],"about_ca_topic_score_codex":0.0009659667,"about_ca_topic_score_gemma":0.002576834,"teacher_disagreement_score":0.080210686,"about_ca_system_score_codex":0.00039528127,"about_ca_system_score_gemma":0.001634659,"threshold_uncertainty_score":0.72557396},"labels":[],"label_agreement":null},{"id":"W2123517861","doi":"10.1086/498120","title":"The Halo Effect of Adherence to Guidelines Extends to Patients with Severe Community-Acquired Pneumonia Requiring Admission to an Intensive Care Unit","year":2005,"lang":"en","type":"letter","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta Hospital","funders":"","keywords":"Medicine; Intensive care unit; Community-acquired pneumonia; Pneumonia; Intensive care medicine; Emergency medicine; Internal medicine","score_opus":0.07835304228736006,"score_gpt":0.4185143542843011,"score_spread":0.34016131199694105,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123517861","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.951125,0.0001561428,0.0000304822,0.044120315,0.001087545,0.0025695653,0.00035167733,0.00027855302,0.00028067015],"genre_scores_gemma":[0.62544924,0.00005188676,0.000019271507,0.3707513,0.0023109864,0.00039628986,0.00044343516,0.00014625276,0.00043135142],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.994935,0.00158236,0.0014185943,0.0007427576,0.0006813576,0.000639975],"domain_scores_gemma":[0.98932475,0.0026154907,0.00044791013,0.0018416956,0.0044965125,0.0012736133],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005432305,0.00070698623,0.0014215292,0.00036276912,0.00095298595,0.00010129775,0.00056229276,0.0006237175,0.00005380632],"category_scores_gemma":[0.01300602,0.00043091484,0.0005924159,0.000733919,0.00030726593,0.00013361027,0.00044008915,0.0019764458,0.00012241356],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008757852,0.00046867807,0.78850293,0.00059590914,0.00044184318,0.000108713815,0.00044690154,0.0002528599,0.00015668977,8.3009786e-7,0.15696791,0.051180936],"study_design_scores_gemma":[0.0028743078,0.03875567,0.57768995,0.0038517604,0.0015164838,0.000028121185,0.0004491192,0.000008065901,0.00005934291,0.00000893866,0.3739226,0.0008356284],"about_ca_topic_score_codex":0.00021850083,"about_ca_topic_score_gemma":0.00047380643,"teacher_disagreement_score":0.32663098,"about_ca_system_score_codex":0.00020735538,"about_ca_system_score_gemma":0.00044914483,"threshold_uncertainty_score":0.9998143},"labels":[],"label_agreement":null},{"id":"W2123549582","doi":"10.1590/s1020-49892000000800006","title":"Impacto de Streptococcus pneumoniae en las neumonías del niño latinoamericano","year":2000,"lang":"es","type":"article","venue":"Revista Panamericana de Salud Pública","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Streptococcus pneumoniae; Medicine; Political science; Microbiology; Biology; Antibiotics","score_opus":0.00915765340794193,"score_gpt":0.29084596806395696,"score_spread":0.281688314656015,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123549582","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.958209,0.002404624,0.00026874244,0.009603596,0.00018570846,0.0015624705,0.00048683945,0.0006447549,0.026634315],"genre_scores_gemma":[0.9806357,0.00624253,0.00023504555,0.0066980547,0.0014831829,0.00024231501,0.00008748913,0.0002819023,0.0040937965],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9927131,0.0012842738,0.0014092023,0.0013123031,0.0008449386,0.0024362167],"domain_scores_gemma":[0.9943746,0.0007133058,0.0006400353,0.0019060625,0.00023454809,0.0021314707],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0008069468,0.0011473488,0.0018637178,0.0006236186,0.0006316899,0.00043114438,0.00078664336,0.0005328245,0.0060217315],"category_scores_gemma":[0.00063714106,0.0010876693,0.0009016916,0.0026566156,0.0008924725,0.00026449494,0.0001415718,0.0016416538,0.0018895064],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015614403,0.0010391346,0.7133718,0.00068541215,0.00117038,0.0008261318,0.0013160937,0.00042517707,0.065610155,0.00087550085,0.0105167385,0.2040073],"study_design_scores_gemma":[0.0007903141,0.0011094772,0.3814624,0.00057482504,0.00094826263,0.00033990192,0.00049807323,0.0012927011,0.00018681551,0.000029373705,0.6118151,0.000952765],"about_ca_topic_score_codex":0.0030206603,"about_ca_topic_score_gemma":0.000051644394,"teacher_disagreement_score":0.60129833,"about_ca_system_score_codex":0.0015818989,"about_ca_system_score_gemma":0.0026426164,"threshold_uncertainty_score":0.99915737},"labels":[],"label_agreement":null},{"id":"W2123735282","doi":"10.1128/jcm.40.8.2832-2836.2002","title":"Nasopharyngeal Carriage of Potential Bacterial Pathogens Related to Day Care Attendance, with Special Reference to the Molecular Epidemiology of <i>Haemophilus influenzae</i>","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health","funders":"","keywords":"Moraxella catarrhalis; Haemophilus influenzae; Carriage; Microbiology; Moraxella (Branhamella) catarrhalis; Streptococcus pneumoniae; Biology; Moraxella; Genotype; Pasteurellaceae; Serotype; Epidemiology; Virology; Medicine; Antibiotics; Bacteria; Genetics; Internal medicine; Gene","score_opus":0.04227222739694522,"score_gpt":0.34350285353262955,"score_spread":0.3012306261356843,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123735282","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99303275,0.00038025476,0.00010757004,0.0037847022,0.0017147574,0.00032865402,0.00015112059,0.0000065940467,0.0004936173],"genre_scores_gemma":[0.99486136,0.00009910925,0.0004891487,0.0032245216,0.0012510234,0.000003127844,0.000011044536,0.000018701261,0.000041962492],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9960317,0.0010056111,0.0022727118,0.00027441268,0.000094439536,0.0003211198],"domain_scores_gemma":[0.99677444,0.00074814056,0.0011340794,0.00037963325,0.0006736349,0.00029007634],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011779808,0.00019827926,0.0014515497,0.00017077007,0.000059339163,0.000002231464,0.00029718268,0.0004092419,0.00025663583],"category_scores_gemma":[0.002075433,0.00011495347,0.0004354551,0.00028465386,0.00041083767,0.00003440208,0.000097458134,0.0007914012,0.000032347238],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002081513,0.00037221127,0.09504257,0.000055532728,0.0005804474,0.00038274503,0.00056935183,0.0005671165,0.8940942,0.00017700384,0.0033242388,0.0027530142],"study_design_scores_gemma":[0.014012311,0.035320617,0.5918591,0.0009138196,0.0016961915,0.0083007105,0.00041085313,0.000008268945,0.0134897,0.00013739923,0.33321032,0.0006407208],"about_ca_topic_score_codex":0.000007820815,"about_ca_topic_score_gemma":0.00003418647,"teacher_disagreement_score":0.88060457,"about_ca_system_score_codex":0.000036381956,"about_ca_system_score_gemma":0.00021786297,"threshold_uncertainty_score":0.46876663},"labels":[],"label_agreement":null},{"id":"W2124579197","doi":"10.1128/aac.48.9.3630-3635.2004","title":"Designing Fluoroquinolone Breakpoints for <i>Streptococcus pneumoniae</i> by Using Genetics instead of Pharmacokinetics-Pharmacodynamics","year":2004,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Manitoba","funders":"","keywords":"Gatifloxacin; Levofloxacin; Streptococcus pneumoniae; Moxifloxacin; Pharmacodynamics; Pharmacokinetics; Breakpoint; Gemifloxacin; Pharmacology; Microbiology; Quinolone; Medicine; Biology; Antibiotics; Genetics","score_opus":0.021407587386877133,"score_gpt":0.3055910236004846,"score_spread":0.2841834362136075,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124579197","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9922028,0.00007339113,0.005066605,0.0014923703,0.0001859389,0.0007559538,0.00011966744,0.000042940297,0.000060310787],"genre_scores_gemma":[0.98941493,0.0012932912,0.0016396081,0.0073509696,0.0001248251,0.000012768113,0.000035617828,0.00005873919,0.00006924107],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989203,0.000015932292,0.00035838384,0.0002878592,0.00011346848,0.00030404748],"domain_scores_gemma":[0.9994322,0.00001634161,0.00016095993,0.00015338424,0.000108975444,0.0001281231],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007376285,0.00022782847,0.0003496398,0.00008787986,0.00015019579,0.000021569454,0.000081077866,0.00012339237,0.00002082446],"category_scores_gemma":[0.000004489962,0.0002133189,0.0001344242,0.00014403026,0.00015044516,0.000059185422,0.000025825837,0.00012969022,0.0000016973629],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000078375626,0.00038792324,0.012015298,0.00015197847,0.00017341795,0.000005979616,0.00019242379,0.00018840097,0.97904104,0.000003163277,0.0018553686,0.0059066275],"study_design_scores_gemma":[0.0087556,0.00040932905,0.002621321,0.00019935405,0.00025629392,0.00011463937,0.000029656634,0.000887876,0.9600708,0.000029507111,0.026326591,0.00029902515],"about_ca_topic_score_codex":0.000020542666,"about_ca_topic_score_gemma":0.0000013015372,"teacher_disagreement_score":0.024471221,"about_ca_system_score_codex":0.000054027245,"about_ca_system_score_gemma":0.000087524575,"threshold_uncertainty_score":0.8698892},"labels":[],"label_agreement":null},{"id":"W2124714829","doi":"10.1099/mic.0.2007/005975-0","title":"The response regulator ComE in Streptococcus mutans functions both as a transcription activator of mutacin production and repressor of CSP biosynthesis","year":2007,"lang":"en","type":"article","venue":"Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Dental and Craniofacial Research; National Institutes of Health","keywords":"Biology; Bacteriocin; Repressor; Gene; Genetics; Transcription (linguistics); Mutant; Streptococcus mutans; Streptococcus gordonii; Activator (genetics); Trans-acting; Regulator gene; Gene expression; Bacteria; Streptococcaceae","score_opus":0.010162031429388582,"score_gpt":0.2609680669570197,"score_spread":0.2508060355276311,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124714829","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99703366,0.00014711074,0.000049033653,0.0018647282,0.00023772515,0.0005381569,0.000033624903,0.00002429578,0.00007167694],"genre_scores_gemma":[0.99936014,0.000039865678,0.000021569067,0.000055914286,0.000040741335,0.0000214703,0.000005917576,0.000011018336,0.00044334357],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99888515,0.00021424674,0.0004180084,0.00024364519,0.00004334088,0.0001955953],"domain_scores_gemma":[0.9990988,0.00028912886,0.00015523066,0.0003112573,0.00009834028,0.000047243117],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00084283535,0.00011049209,0.00027140198,0.00024816193,0.000104905375,0.0000031082914,0.000046790785,0.0001669005,0.000026464126],"category_scores_gemma":[0.0004963393,0.00007748166,0.00006885727,0.00035087828,0.0004071092,0.000042941374,0.000011237822,0.0001625063,0.000003139638],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019493602,0.00017630038,0.035716414,0.000035351004,0.000054041386,0.0000048313022,0.00045889395,0.0000035503633,0.9605829,0.00003514102,0.00008391975,0.00089929387],"study_design_scores_gemma":[0.0005448935,0.00052384275,0.28802767,0.00008114007,0.000060128896,0.00022617004,0.0006000836,0.0000015815094,0.6985813,0.000017126866,0.011269754,0.00006634713],"about_ca_topic_score_codex":0.000054187713,"about_ca_topic_score_gemma":0.00025626188,"teacher_disagreement_score":0.26200166,"about_ca_system_score_codex":0.00006176493,"about_ca_system_score_gemma":0.0000880355,"threshold_uncertainty_score":0.31596103},"labels":[],"label_agreement":null},{"id":"W2124785297","doi":"10.1136/heartjnl-2012-301743","title":"Pneumococcal vaccination and risk of acute coronary syndromes in patients with pneumonia: population-based cohort study","year":2012,"lang":"en","type":"article","venue":"Heart","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dalhousie University; Alliance for Canadian Health Outcomes Research in Diabetes; McMaster University; University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Pneumonia; Vaccination; Cohort; Pneumococcal vaccination; Cohort study; Pneumococcal infections; Pneumococcal pneumonia; Population; Acute coronary syndrome; Internal medicine; Intensive care medicine; Streptococcus pneumoniae; Pediatrics; Immunology; Myocardial infarction; Antibiotics; Environmental health","score_opus":0.008194284132491608,"score_gpt":0.2635757765658636,"score_spread":0.255381492433372,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124785297","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987567,0.000014582845,0.0000050470467,0.00007419039,0.000073414056,0.000988507,0.000013871878,0.000025627507,0.000048080696],"genre_scores_gemma":[0.9997925,0.0000047645667,0.000028390063,0.000047591097,0.000016019076,0.00004834256,0.000029365086,0.000013590253,0.000019428533],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99918765,0.00008877856,0.00021084744,0.0001415044,0.00021203877,0.00015916214],"domain_scores_gemma":[0.9995492,0.000051508967,0.000071735856,0.00016252068,0.000068133886,0.000096915464],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018993215,0.000102404854,0.00025623644,0.00016294503,0.000066315326,0.0000043550644,0.000017458407,0.000054464166,0.000030770865],"category_scores_gemma":[0.000024555422,0.000077524535,0.000028108187,0.0001856569,0.00001659433,0.00012027544,0.000011906915,0.00013794335,0.000005661086],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007519429,0.0011751415,0.99808246,0.000020788586,0.00010523869,0.0000033472816,0.00008133614,0.000014240978,0.00027839636,0.0000021064072,0.000005492395,0.00015626372],"study_design_scores_gemma":[0.0020280739,0.0010489287,0.9963661,0.00002855803,0.00029401088,0.000016996499,0.000027613823,0.0000472065,0.000027918375,0.0000019027831,0.00003342094,0.000079308185],"about_ca_topic_score_codex":0.00013295762,"about_ca_topic_score_gemma":0.00004500457,"teacher_disagreement_score":0.0019528797,"about_ca_system_score_codex":0.00005555565,"about_ca_system_score_gemma":0.000031908497,"threshold_uncertainty_score":0.31613588},"labels":[],"label_agreement":null},{"id":"W2125303305","doi":"10.1086/317495","title":"Predictors of Symptom Resolution in Patients with Community‐Acquired Pneumonia","year":2000,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Robarts Clinical Trials; University of Alberta","funders":"Medical Research Council; University of Alberta; London Health Sciences Centre; Medical Research Council Canada; McKnight Foundation","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Intensive care medicine; Internal medicine","score_opus":0.017340386361184006,"score_gpt":0.3042333840427254,"score_spread":0.28689299768154136,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125303305","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964975,0.000039058163,0.0000048423485,0.00007454461,0.00017250334,0.0004623974,0.000051080875,0.00015001134,0.002548071],"genre_scores_gemma":[0.99913293,0.0000662975,0.0000017146108,0.00044380658,0.00010483017,0.00003141543,0.00008006813,0.00002318655,0.00011576096],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982353,0.00043255696,0.0006580968,0.00021028948,0.00023284105,0.0002309146],"domain_scores_gemma":[0.9986182,0.0003630402,0.00013683972,0.00047033408,0.00014601041,0.0002655981],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021449203,0.0001646818,0.00047242356,0.00015504591,0.00014767548,0.0000100350335,0.00008315379,0.00015289414,0.00020166408],"category_scores_gemma":[0.00030264547,0.0001277384,0.00018272584,0.00041539813,0.0004222724,0.00011317959,0.000027806484,0.00033744567,0.000044323184],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022805894,0.0049670143,0.9912355,0.000066036315,0.00011415665,0.000006056527,0.000046756842,0.000129066,0.00003069462,0.000010693343,0.00012330837,0.0030426509],"study_design_scores_gemma":[0.0042101103,0.0030383249,0.9906565,0.00024338429,0.00023178142,0.0000020480672,0.000016036282,0.000039909875,0.0000071876266,0.000050680366,0.0013768668,0.00012715557],"about_ca_topic_score_codex":0.00006733858,"about_ca_topic_score_gemma":0.00007300047,"teacher_disagreement_score":0.0039820513,"about_ca_system_score_codex":0.00007508786,"about_ca_system_score_gemma":0.0001444958,"threshold_uncertainty_score":0.52090204},"labels":[],"label_agreement":null},{"id":"W2125532569","doi":"10.1183/09031936.03.00072803","title":"Deaths in risk classes I–III: a measure of quality of care in patients hospitalised with CAP?: Table 1","year":2003,"lang":"en","type":"article","venue":"European Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Pfizer Canada; Fondation pour la Recherche Médicale; Pfizer","keywords":"Medicine; Pneumonia; Intensive care medicine; Internal medicine; Lung; Respiratory failure; Cause of death; COPD; Pulmonary fibrosis; Disease; Heart failure; Community-acquired pneumonia","score_opus":0.018367776423475465,"score_gpt":0.2683921988889592,"score_spread":0.25002442246548373,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125532569","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98342437,0.0007032997,0.00002283036,0.000010903064,0.00010924803,0.0002795455,0.000018604926,0.000011560078,0.015419636],"genre_scores_gemma":[0.9996294,0.00002714449,0.000066429806,0.00016882615,0.000040120223,0.000002915186,0.0000015622492,0.000036005185,0.000027642825],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99658394,0.0015147994,0.00091846153,0.00021544323,0.0005009619,0.00026640226],"domain_scores_gemma":[0.99826306,0.000056960776,0.00061776844,0.00032140504,0.0005618768,0.00017894046],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014709648,0.0001899674,0.00052160886,0.0004092285,0.0000858155,0.000013440024,0.00011856701,0.00006664285,0.000043114804],"category_scores_gemma":[0.0006264711,0.00014313428,0.00011665448,0.00056289654,0.000122011705,0.00013731704,0.000019131776,0.00066685944,0.0000051034312],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003796843,0.00048524942,0.9922574,0.00009639668,0.000049104878,0.00011174663,0.0008311137,0.00016947566,0.004791945,0.000042806067,0.00005981611,0.0007252495],"study_design_scores_gemma":[0.007893913,0.0020720472,0.9815698,0.0004738571,0.0000520098,0.000019969113,0.0010075835,5.9027667e-7,0.0022954987,0.0000065401673,0.0044517173,0.00015642523],"about_ca_topic_score_codex":0.000031100357,"about_ca_topic_score_gemma":0.00015482944,"teacher_disagreement_score":0.016204981,"about_ca_system_score_codex":0.00014806734,"about_ca_system_score_gemma":0.00047205144,"threshold_uncertainty_score":0.5836847},"labels":[],"label_agreement":null},{"id":"W2125721210","doi":"10.1093/jac/dki085","title":"Ceftriaxone pharmacokinetics in interleukin-10-treated murine pneumococcal pneumonia","year":2005,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Ceftriaxone; Pneumococcal pneumonia; Pharmacokinetics; Medicine; Pneumonia; Streptococcus pneumoniae; Immunology; Pneumococcal infections; Antibiotics; Pharmacology; Internal medicine; Microbiology; Biology","score_opus":0.012147611417249866,"score_gpt":0.28774778299367637,"score_spread":0.2756001715764265,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125721210","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98226315,0.00007500044,0.000052548927,0.016173236,0.00029312653,0.00022825172,0.000005311888,0.000033260203,0.0008761236],"genre_scores_gemma":[0.9921951,0.00078364566,0.00047818743,0.0043966197,0.0011137666,0.0000016943346,0.0000035939413,0.000048787955,0.0009785619],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998307,0.00006160911,0.00088413135,0.00018439151,0.00022558315,0.0003372893],"domain_scores_gemma":[0.9989505,0.00004330851,0.0003651654,0.00018604596,0.00025226796,0.0002027036],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028250233,0.00025266394,0.00061707816,0.0005314704,0.00005176594,0.000032254196,0.00016557054,0.00015800433,0.0006639318],"category_scores_gemma":[0.000033588494,0.00020344798,0.0003148202,0.00042792555,0.00009557338,0.0001751674,0.00002146387,0.0006080839,0.000062896965],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007603786,0.0010179031,0.011762455,0.00003146649,0.00014036438,0.00021759007,0.00017160887,0.00012374701,0.9756096,0.000002018011,0.0042216256,0.0059412704],"study_design_scores_gemma":[0.01194655,0.0008719848,0.045363806,0.00032887774,0.0001153272,0.0030571152,0.000023086703,0.00015534318,0.5977029,0.0000048675547,0.34016135,0.00026876008],"about_ca_topic_score_codex":0.0000071235613,"about_ca_topic_score_gemma":0.00001153463,"teacher_disagreement_score":0.37790662,"about_ca_system_score_codex":0.00021904288,"about_ca_system_score_gemma":0.00016425025,"threshold_uncertainty_score":0.8296368},"labels":[],"label_agreement":null},{"id":"W2125786935","doi":"10.1053/rmed.2002.1316","title":"The effects of pneumolysin and hydrogen peroxide, alone and in combination, on human ciliated epithelium in vitro","year":2002,"lang":"en","type":"article","venue":"Respiratory Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":77,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Pneumolysin; Microbiology; Catalase; Streptococcus pneumoniae; Virulence; Medicine; In vitro; Epithelium; Biology; Pathology; Biochemistry; Internal medicine; Antibiotics; Gene; Oxidative stress","score_opus":0.02284693649666905,"score_gpt":0.2833031079502876,"score_spread":0.26045617145361855,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125786935","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923338,0.0038453739,0.0000010118862,0.0024623384,0.000079676676,0.0005509006,0.0000012949006,0.00002676058,0.00069882645],"genre_scores_gemma":[0.99802023,0.0003697488,0.0000013293369,0.00129637,0.00006613658,0.000042798438,0.0000023226198,0.000019674839,0.00018141532],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984677,0.00022822137,0.00049907016,0.00027189642,0.0002874344,0.00024568278],"domain_scores_gemma":[0.9988416,0.0005297455,0.0001232965,0.000296176,0.00006756269,0.00014162945],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00059209997,0.00018527397,0.00047033714,0.00042608276,0.00013920531,0.0000055670753,0.00006581812,0.00011790719,0.000013411014],"category_scores_gemma":[0.0007092354,0.00012121643,0.000032059826,0.0004835478,0.00045319818,0.000048360573,0.000028545546,0.00033229904,0.0000042134084],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008324982,0.00028070627,0.033075713,0.00019009341,0.000028650626,0.000113125345,0.0004567061,0.0000017540268,0.96166253,0.00015431645,0.00013385764,0.0038193248],"study_design_scores_gemma":[0.016017174,0.003977467,0.8128839,0.0013834428,0.00013333866,0.00007598712,0.00024144838,0.00029392642,0.15345259,0.00032070148,0.010933062,0.0002869729],"about_ca_topic_score_codex":0.000044817905,"about_ca_topic_score_gemma":0.000074293384,"teacher_disagreement_score":0.8082099,"about_ca_system_score_codex":0.000070413014,"about_ca_system_score_gemma":0.000021958316,"threshold_uncertainty_score":0.49430624},"labels":[],"label_agreement":null},{"id":"W2126295587","doi":"10.1093/heapol/czt104","title":"The community case management of pneumonia in Africa: a review of the evidence","year":2013,"lang":"en","type":"review","venue":"Health Policy and Planning","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":102,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research","keywords":"Medicine; Child mortality; Intensive care medicine; Pneumonia; Developing country; Community-acquired pneumonia; Environmental health; Economic growth; Population","score_opus":0.3076595472159645,"score_gpt":0.49686665922750556,"score_spread":0.18920711201154106,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126295587","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00013575883,0.99470174,6.7331155e-7,0.0026274533,0.00006781721,0.0015049772,0.000017531283,0.000006278092,0.0009377673],"genre_scores_gemma":[0.00035628825,0.9981958,0.000009113005,0.0011175802,0.000049432838,0.000119082135,0.0000019340862,0.000010509985,0.00014024759],"study_design_codex":"systematic_review","study_design_gemma":"not_applicable","domain_scores_codex":[0.9975103,0.0011969975,0.0008020222,0.00010304491,0.00013993689,0.00024765675],"domain_scores_gemma":[0.9976362,0.0010505224,0.0006251032,0.00055109995,0.000043837445,0.00009321113],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018227024,0.00016496441,0.0009961373,0.00011380146,0.000383223,0.0000057776674,0.00015347701,0.000085137755,0.0000026365296],"category_scores_gemma":[0.00038245003,0.00007901088,0.0001552548,0.0005811901,0.00012640188,0.00002457531,0.00013608423,0.0007804373,0.0000020460504],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000017574812,0.000036296515,0.0001002611,0.5686875,0.00006941494,0.0000515347,0.00066120026,2.529427e-7,2.1607129e-7,0.00033320975,0.00093233376,0.42912605],"study_design_scores_gemma":[0.000047368267,0.000057506,0.0002926185,0.39256912,0.00014022924,0.00074212364,0.00013207307,7.5689934e-7,3.6950482e-8,0.000010208975,0.605969,0.000038956594],"about_ca_topic_score_codex":0.0017465195,"about_ca_topic_score_gemma":0.000039625545,"teacher_disagreement_score":0.6050367,"about_ca_system_score_codex":0.00009306196,"about_ca_system_score_gemma":0.00051551574,"threshold_uncertainty_score":0.33906552},"labels":[],"label_agreement":null},{"id":"W2126411620","doi":"10.1186/1757-1626-2-9114","title":"Colobronchial fistula presenting with persistent pneumonia in a patient with Crohn's disease: a case report","year":2009,"lang":"en","type":"article","venue":"Cases Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; Western University","funders":"","keywords":"Medicine; Fistula; Pneumonia; Crohn's disease; Radiology; Surgery; Complication; Lung; Past medical history; Disease; Internal medicine","score_opus":0.016382792598933264,"score_gpt":0.27206401908635885,"score_spread":0.2556812264874256,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126411620","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969612,0.00018542453,0.00003041101,0.0015547841,0.00010214862,0.00035323898,0.000006513342,0.00003128913,0.0007750012],"genre_scores_gemma":[0.99895245,0.0000096126605,0.00008949508,0.0004525556,0.00022673987,0.000014938053,0.000004126384,0.000015266103,0.00023481168],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.99866724,0.00006388441,0.00035495037,0.00023157321,0.0003485198,0.00033385277],"domain_scores_gemma":[0.9988611,0.000036145204,0.00021815933,0.00022780265,0.00016022586,0.0004965775],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001270799,0.00017541394,0.00025449006,0.00017186417,0.00033137153,0.00007326197,0.00003801832,0.00004475877,0.00004087595],"category_scores_gemma":[0.00014063154,0.00011286028,0.00013855446,0.0002392388,0.00008444403,0.00012682601,0.000014009861,0.00045553257,0.0000025142763],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00057654426,0.00046653594,0.09230403,0.000020452437,0.000063924024,0.90441734,0.00031748303,0.0004211094,0.00036365763,0.0000034430045,0.0001783284,0.00086714287],"study_design_scores_gemma":[0.00123286,0.0017397715,0.21014959,0.00020400276,0.00021740692,0.7833373,0.00048416937,0.00011756887,0.000024722201,0.000004119881,0.0023566731,0.0001318465],"about_ca_topic_score_codex":0.00002576051,"about_ca_topic_score_gemma":0.00008497161,"teacher_disagreement_score":0.12108008,"about_ca_system_score_codex":0.00020161654,"about_ca_system_score_gemma":0.00045854674,"threshold_uncertainty_score":0.4602309},"labels":[],"label_agreement":null},{"id":"W2126540136","doi":"10.1128/jcm.38.4.1575-1580.2000","title":"A Novel Multiresistant <i>Streptococcus pneumoniae</i> Serogroup 19 Clone from Washington State Identified by Pulsed-Field Gel Electrophoresis and Restriction Fragment Length Patterns","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary","funders":"Wellcome Trust","keywords":"Pulsed-field gel electrophoresis; Restriction fragment length polymorphism; Streptococcus pneumoniae; Biology; clone (Java method); Microbiology; Restriction enzyme; Penicillin; Gel electrophoresis; Molecular epidemiology; Restriction fragment; Genotype; Erythromycin; Pneumococcal infections; Antibacterial agent; Genetics; Antibiotics; Gene","score_opus":0.018872821014462256,"score_gpt":0.3165081144399787,"score_spread":0.2976352934255165,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126540136","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940624,0.00067532074,0.00046158623,0.003590116,0.0006411016,0.00029873342,0.0002012926,0.000029220491,0.00004022015],"genre_scores_gemma":[0.9874209,0.008615688,0.00010254841,0.0030237476,0.00047243774,0.000008740948,0.0000460793,0.00002905106,0.00028078494],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9968822,0.00029862174,0.001868421,0.00041764142,0.00013388443,0.00039921788],"domain_scores_gemma":[0.9975307,0.0008794239,0.0007524623,0.00028046264,0.00016234217,0.00039459713],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007036264,0.00026247956,0.0009248155,0.00013893284,0.00014547864,0.000048118814,0.00016115724,0.00042339583,0.00024448556],"category_scores_gemma":[0.00038757338,0.00019908913,0.00037963118,0.00015159638,0.0001382389,0.00012055943,0.00004343914,0.0012039957,0.000020670504],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00088436826,0.0009847718,0.13070025,0.0000221435,0.00038540873,0.000092507515,0.000053934113,0.0000064478604,0.8495356,0.0000011013805,0.0043522306,0.012981255],"study_design_scores_gemma":[0.019872723,0.012360471,0.61095494,0.00065013074,0.0013313793,0.0016120272,0.00017360819,0.00009307115,0.062416855,0.00023073453,0.28945038,0.0008537047],"about_ca_topic_score_codex":0.00023845329,"about_ca_topic_score_gemma":0.000111783964,"teacher_disagreement_score":0.78711873,"about_ca_system_score_codex":0.00008937807,"about_ca_system_score_gemma":0.00016535433,"threshold_uncertainty_score":0.81186193},"labels":[],"label_agreement":null},{"id":"W2127059473","doi":"10.1128/aac.02557-13","title":"Antimicrobial Activity of Ceftaroline Tested against Drug-Resistant Subsets of Streptococcus pneumoniae from U.S. Medical Centers","year":2014,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Shionogi; Astellas Pharma; GlaxoSmithKline; AstraZeneca; Nabriva Therapeutics; Pfizer","keywords":"Ceftriaxone; Microbiology; Levofloxacin; Penicillin; Streptococcus pneumoniae; Trimethoprim; Erythromycin; Minimum inhibitory concentration; Antimicrobial; Medicine; Antibiotics; Multiple drug resistance; Cephalosporin; Biology","score_opus":0.008645040827962174,"score_gpt":0.2508126146835638,"score_spread":0.24216757385560164,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127059473","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9938233,0.000009471961,0.00007198405,0.0049923225,0.00022312993,0.0003591772,0.00018085954,0.000045321078,0.00029443603],"genre_scores_gemma":[0.9930357,0.0005776318,0.00005339613,0.0059916936,0.00016863282,0.0000035285677,0.000068281624,0.00003864496,0.00006252182],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984089,0.00009007758,0.00051137473,0.00038246543,0.00030040438,0.0003067723],"domain_scores_gemma":[0.9989283,0.000078359364,0.0002968895,0.00034598127,0.000120728866,0.00022975652],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018098635,0.00027700473,0.0006951358,0.00013524352,0.000096915064,0.000014188602,0.0001528168,0.00020517192,0.00017422483],"category_scores_gemma":[0.000044898396,0.0002282174,0.00021744047,0.00019601671,0.00033840744,0.00007125422,0.00005444663,0.00024254453,0.000005425657],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024587178,0.0009143117,0.15631117,0.0001349651,0.00020362977,0.000014369837,0.00018376127,0.0000036093768,0.830019,0.0000044781395,0.0039950376,0.007969801],"study_design_scores_gemma":[0.006702107,0.0002637029,0.49373224,0.0006326411,0.000136215,0.000017146871,0.00001858839,0.00035583347,0.47544613,0.000008300434,0.022367299,0.00031978317],"about_ca_topic_score_codex":0.00030066987,"about_ca_topic_score_gemma":0.00008710909,"teacher_disagreement_score":0.35457286,"about_ca_system_score_codex":0.000026013153,"about_ca_system_score_gemma":0.000116139294,"threshold_uncertainty_score":0.93064356},"labels":[],"label_agreement":null},{"id":"W2127196597","doi":"10.1378/chest.128.2.940","title":"The Controversy of Combination vs Monotherapy in the Treatment of Hospitalized Community-Acquired Pneumonia","year":2005,"lang":"en","type":"review","venue":"CHEST Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":67,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"","keywords":"Medicine; Pneumonia; Intensive care medicine; Regimen; Community-acquired pneumonia; Pneumococcal pneumonia; Population; Combination therapy; Internal medicine; Streptococcus pneumoniae; Antibiotics","score_opus":0.06124875952222451,"score_gpt":0.37244588427042863,"score_spread":0.3111971247482041,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127196597","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.014992952,0.98230547,0.000007311188,0.0009745293,0.00026476636,0.00096336834,0.000013401546,0.0000076690685,0.00047055635],"genre_scores_gemma":[0.009603886,0.9899445,0.000008097983,0.00008286172,0.0001754971,0.000039574483,0.0000119791675,0.000024542625,0.000109070395],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99768716,0.00092480634,0.0008653231,0.00007951288,0.00026190392,0.00018128986],"domain_scores_gemma":[0.9977403,0.0007368466,0.0008803256,0.0004565558,0.00012666873,0.00005929033],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007900772,0.0002490458,0.0012325703,0.00017441792,0.00031880243,0.00003219202,0.00027728968,0.0001763521,0.000015940375],"category_scores_gemma":[0.000076643206,0.000112429014,0.0006727266,0.0002675941,0.00021973987,0.00004528559,0.000008917807,0.00049633504,0.0000034144723],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011470686,0.0029349865,0.000925834,0.001586432,0.00081760134,0.00002815123,0.002659398,0.000002033998,0.00013570902,0.00013184256,0.00014263426,0.99052066],"study_design_scores_gemma":[0.0029756275,0.002121047,0.0046094563,0.0022347963,0.00074085913,0.00037357784,0.00026239004,0.0000041176163,0.000008899389,0.000046961184,0.9865293,0.00009299025],"about_ca_topic_score_codex":0.000026703941,"about_ca_topic_score_gemma":0.000019770136,"teacher_disagreement_score":0.9904277,"about_ca_system_score_codex":0.00030973236,"about_ca_system_score_gemma":0.00032419706,"threshold_uncertainty_score":0.45847222},"labels":[],"label_agreement":null},{"id":"W2127389071","doi":"10.1093/jac/47.4.435","title":"In vitro pharmacodynamic modelling simulating free serum concentrations of fluoroquinolones against multidrug-resistant Streptococcus pneumoniae","year":2001,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Janssen Canada; Bayer Canada; Medical Research Council Canada; Pfizer","keywords":"Streptococcus pneumoniae; Ciprofloxacin; Microbiology; Pharmacodynamics; Multiple drug resistance; Streptococcaceae; Antibacterial agent; Biology; Pharmacokinetics; Pharmacology; Antibiotics","score_opus":0.016151550795507928,"score_gpt":0.28312421163721363,"score_spread":0.2669726608417057,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127389071","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99362445,0.00008700163,0.0014694228,0.0040526413,0.00027718287,0.00030391585,0.00003359853,0.000019096751,0.00013271855],"genre_scores_gemma":[0.99625367,0.0008926543,0.00073472445,0.0017715102,0.00025465354,0.0000015855794,0.0000039619595,0.00003504309,0.00005221649],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982681,0.000061383114,0.0009689206,0.00016553987,0.00023042006,0.0003056343],"domain_scores_gemma":[0.99864036,0.00007659899,0.0005961418,0.00021665033,0.0003501391,0.000120111916],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021930684,0.00020723861,0.00056545524,0.00033188457,0.000093065886,0.000020020849,0.00016942162,0.00012278055,0.00004062953],"category_scores_gemma":[0.00003905776,0.00018079104,0.00029185036,0.00035440215,0.000102587306,0.00024561005,0.000018653645,0.0004311857,0.0000019157005],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047736903,0.0004860392,0.006673505,0.000045997098,0.00013113409,0.00014514131,0.00041358935,0.045781452,0.9445726,0.000004745542,0.00014460117,0.0011237725],"study_design_scores_gemma":[0.010205878,0.0003057045,0.0029244055,0.0005138234,0.000105333755,0.00023205232,0.00019757272,0.053627104,0.9274993,0.000029201883,0.0040878714,0.0002717828],"about_ca_topic_score_codex":0.000018900759,"about_ca_topic_score_gemma":0.0000101516,"teacher_disagreement_score":0.017073385,"about_ca_system_score_codex":0.00013518105,"about_ca_system_score_gemma":0.00021495149,"threshold_uncertainty_score":0.7372445},"labels":[],"label_agreement":null},{"id":"W2128366978","doi":"10.1128/jcm.42.8.3570-3574.2004","title":"Characterization and Prevalence of MefA, MefE, and the Associated <i>msr</i> (D) Gene in <i>Streptococcus pneumoniae</i> Clinical Isolates","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":123,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Streptococcus pneumoniae; Open reading frame; Efflux; Microbiology; Gene; Strain (injury); Biology; Genetics; Antibiotics; Peptide sequence","score_opus":0.027908853395842696,"score_gpt":0.3473816824142593,"score_spread":0.3194728290184166,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128366978","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99407905,0.00051020127,0.00006080135,0.0045823846,0.00043935498,0.00026946017,0.000023388553,0.0000059581903,0.000029410337],"genre_scores_gemma":[0.9920497,0.00578927,0.000047795173,0.0018571473,0.00019616201,0.0000027223468,0.0000045276934,0.000009192812,0.00004348403],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9968559,0.00061337295,0.0021244553,0.00018974315,0.000049386934,0.00016714112],"domain_scores_gemma":[0.9970699,0.0011781493,0.0012555261,0.00014476357,0.00023190577,0.0001197323],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0028265596,0.00012557404,0.00095894834,0.00008731332,0.00004455278,0.000007800593,0.00010189665,0.00035587902,0.000010225818],"category_scores_gemma":[0.0021980612,0.00007378202,0.0002435807,0.00014014024,0.0008700748,0.00007343119,0.00005983387,0.0007743884,0.000001939302],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003506182,0.000393589,0.57542133,0.00003681062,0.00013165324,0.000015033804,0.000062221894,0.000002767825,0.42209038,0.00003031504,0.0000149324815,0.001450381],"study_design_scores_gemma":[0.012518445,0.0019925048,0.9779537,0.0003119442,0.00031256254,0.0007141179,0.000019344065,0.000010939961,0.003218429,0.00021621774,0.0026358285,0.00009601085],"about_ca_topic_score_codex":0.00000422037,"about_ca_topic_score_gemma":0.0000124983335,"teacher_disagreement_score":0.41887194,"about_ca_system_score_codex":0.000018999632,"about_ca_system_score_gemma":0.00021379607,"threshold_uncertainty_score":0.33643752},"labels":[],"label_agreement":null},{"id":"W2128667807","doi":"10.1378/chest.10-1054","title":"Only Severely Limited, Premorbid Functional Status Is Associated With Short- and Long-term Mortality in Patients With Pneumonia Who Are Critically Ill","year":2010,"lang":"en","type":"article","venue":"CHEST Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; University of Alberta","funders":"Alberta Heritage Foundation for Medical Research; University of Alberta; Pfizer Canada; Canadian Institutes of Health Research; Abbott Canada; Capital Health","keywords":"Medicine; Critically ill; Intensive care medicine; Pneumonia; Critical illness; Term (time); Internal medicine","score_opus":0.019742851474995684,"score_gpt":0.26203242050819714,"score_spread":0.24228956903320145,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128667807","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983946,0.000028158567,0.00004953379,0.0007073779,0.00019417795,0.00023429371,0.000045330547,0.00003298319,0.00031353137],"genre_scores_gemma":[0.99771947,0.000025562504,0.000047306137,0.0018498318,0.0001519863,0.0000061681485,0.000026593465,0.0000322313,0.00014087722],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984177,0.000050744537,0.0003239306,0.00027010345,0.0005138507,0.00042370788],"domain_scores_gemma":[0.9981102,0.000061145176,0.00013408736,0.00019539903,0.0010013867,0.00049780635],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018297955,0.00022523831,0.00036170374,0.00016353469,0.0002231507,0.00009014232,0.000052521093,0.00018102936,0.00018488156],"category_scores_gemma":[0.00031843004,0.00015513638,0.00005773322,0.00022981514,0.00021879352,0.00024226683,0.000024636298,0.0012853638,0.000005140135],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022993897,0.00066902925,0.9968677,0.000046777102,0.00019324098,0.00029353565,0.00010671362,0.0000027965627,0.0010190564,0.0000041745343,0.00008811465,0.00047889605],"study_design_scores_gemma":[0.0028327142,0.0007474881,0.99445856,0.0003987905,0.00020601138,0.0006846158,0.00003338824,0.000018985227,0.00006548771,0.000011660149,0.00033221536,0.0002100834],"about_ca_topic_score_codex":0.0000057121283,"about_ca_topic_score_gemma":0.00053199823,"teacher_disagreement_score":0.002602775,"about_ca_system_score_codex":0.0001295898,"about_ca_system_score_gemma":0.0003944955,"threshold_uncertainty_score":0.6326278},"labels":[],"label_agreement":null},{"id":"W2128682961","doi":"10.1093/jac/dkf022","title":"Pharmacodynamic activity of fluoroquinolones against ciprofloxacin-resistant Streptococcus pneumoniae","year":2002,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba","funders":"GlaxoSmithKline","keywords":"Gatifloxacin; Levofloxacin; Moxifloxacin; Ciprofloxacin; Gemifloxacin; Efflux; Streptococcus pneumoniae; Microbiology; Minimum inhibitory concentration; Antibacterial agent; Pharmacology; Pharmacodynamics; Antibiotics; Chemistry; Biology; Pharmacokinetics; Biochemistry","score_opus":0.018666244553094916,"score_gpt":0.2704984034787075,"score_spread":0.2518321589256126,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128682961","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9925483,0.00014158316,0.000082269136,0.005842963,0.00041337372,0.0002589241,0.000019812946,0.000028575932,0.0006642176],"genre_scores_gemma":[0.9958254,0.0015440288,0.00009109058,0.0019203372,0.0003146159,0.0000015663499,0.0000010894142,0.00003784023,0.00026402785],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99857205,0.000064277134,0.0006400376,0.00016854178,0.0002794415,0.0002756392],"domain_scores_gemma":[0.9984723,0.00004138743,0.0006929852,0.00023301701,0.0004010299,0.00015931998],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018264657,0.00022764488,0.00064833026,0.0003224074,0.00009259793,0.000017712662,0.00015791741,0.0001416136,0.0002444381],"category_scores_gemma":[0.000032698477,0.00018049269,0.0004644428,0.0003101858,0.00015884686,0.00017505871,0.000017345295,0.00044931512,0.000014068711],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028859422,0.00096559996,0.004346486,0.00010610548,0.0003191904,0.00009593179,0.00024211318,0.000035944875,0.9774802,0.0000024331691,0.0033792148,0.012738208],"study_design_scores_gemma":[0.0045570997,0.0008972647,0.015624418,0.00031374404,0.00014973397,0.00022321186,0.000030210493,0.00017828654,0.95625365,0.0000041816784,0.021555346,0.00021284579],"about_ca_topic_score_codex":0.000004030304,"about_ca_topic_score_gemma":0.0000024881144,"teacher_disagreement_score":0.02122652,"about_ca_system_score_codex":0.00010345045,"about_ca_system_score_gemma":0.00010452384,"threshold_uncertainty_score":0.7360278},"labels":[],"label_agreement":null},{"id":"W2129003028","doi":"10.1093/jpids/pir003","title":"The Burden of Infant Meningococcal Disease in the United States","year":2012,"lang":"en","type":"article","venue":"Journal of the Pediatric Infectious Diseases Society","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Neisseria meningitidis; Meningitis; Streptococcus pneumoniae; Pediatrics; Meningococcal disease; Vaccination; Meningococcal vaccine; Disease; Immunization; Haemophilus influenzae; Sepsis; Immunology; Antibiotics; Immune system; Internal medicine; Microbiology","score_opus":0.009525372225917277,"score_gpt":0.268395729969574,"score_spread":0.25887035774365674,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129003028","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993815,0.0019061269,0.000029141425,0.0032322968,0.00061282236,0.00029984183,0.000021638167,0.000013855247,0.000069246395],"genre_scores_gemma":[0.99518293,0.0019605772,0.0000031921832,0.00074273575,0.0020435357,0.000014446948,0.0000027341464,0.000014008319,0.000035856425],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99830854,0.00029704015,0.00051043945,0.00007179739,0.0005002253,0.0003119461],"domain_scores_gemma":[0.9980605,0.00063145044,0.0005198865,0.00031234988,0.00024091052,0.00023485636],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007659143,0.00014425073,0.00023273459,0.000096029544,0.00041522694,0.000031860258,0.00025410615,0.000060715498,0.000012100714],"category_scores_gemma":[0.00051979546,0.000060630227,0.0007620277,0.0010009635,0.0001886196,0.000123375,0.00007054367,0.0005251814,0.000002452845],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000523651,0.0004339607,0.98661184,0.000065591434,0.00013134356,0.0000043950254,0.00260603,0.0022587173,0.00007818076,0.000057347337,0.0076420563,0.00005815714],"study_design_scores_gemma":[0.0023808752,0.00034949704,0.9567218,0.00007117103,0.0027265765,0.00069085247,0.0036906684,0.0009486366,0.000009046737,0.000531362,0.031682808,0.00019669923],"about_ca_topic_score_codex":0.0001116984,"about_ca_topic_score_gemma":0.0000023842686,"teacher_disagreement_score":0.029890047,"about_ca_system_score_codex":0.00013310637,"about_ca_system_score_gemma":0.00034485187,"threshold_uncertainty_score":0.3193632},"labels":[],"label_agreement":null},{"id":"W2129119999","doi":"10.1086/651681","title":"The Challenge of Reducing Invasive Pneumococcal Disease in Indigenous Indian Populations","year":2010,"lang":"en","type":"letter","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Children's Hospital; Alberta Health Services; University of Calgary","funders":"","keywords":"Pneumococcal disease; Medicine; Indigenous; Pneumococcal infections; Streptococcus pneumoniae; Disease; Intensive care medicine; Microbiology; Internal medicine; Antibiotics; Ecology; Biology","score_opus":0.05147409914369583,"score_gpt":0.3649301729674832,"score_spread":0.3134560738237874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129119999","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7213132,0.0010448159,0.000002816399,0.2708712,0.003430416,0.002004354,0.00035342135,0.00020801515,0.0007717605],"genre_scores_gemma":[0.9190935,0.0014445945,0.0000015807134,0.07278595,0.00543501,0.00037289163,0.00044243442,0.00011104279,0.0003130242],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9960768,0.00050862215,0.0016001468,0.00072678766,0.00044830397,0.0006392977],"domain_scores_gemma":[0.99506855,0.002134899,0.0007058874,0.0012466785,0.00027478332,0.00056921836],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.00038476233,0.00046378505,0.0010479622,0.0004637246,0.0004991799,0.000061367464,0.00030212943,0.001708716,0.000101139965],"category_scores_gemma":[0.004719283,0.0003375451,0.0009538135,0.0004699974,0.00093659025,0.000096241456,0.00013958044,0.0065014022,0.00008760821],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046554527,0.0017517188,0.96161306,0.00069435046,0.0002829732,0.0016838006,0.00019751732,0.00004464377,0.00004757744,0.00004802153,0.029905118,0.0036846797],"study_design_scores_gemma":[0.0011536161,0.000671078,0.85409963,0.0007016965,0.00080607936,0.000021571623,0.000018377683,0.000009493582,0.0000039430925,0.0028075173,0.13927844,0.00042858406],"about_ca_topic_score_codex":0.00018517417,"about_ca_topic_score_gemma":0.00076203025,"teacher_disagreement_score":0.19808525,"about_ca_system_score_codex":0.00015535622,"about_ca_system_score_gemma":0.0019473322,"threshold_uncertainty_score":0.9999077},"labels":[],"label_agreement":null},{"id":"W2129231435","doi":"10.1093/glycob/cwn021","title":"A unique glycosyltransferase involved in the initial assembly of Moraxella catarrhalis lipooligosaccharides","year":2008,"lang":"en","type":"article","venue":"Glycobiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"National Institute of Allergy and Infectious Diseases; National Institute on Deafness and Other Communication Disorders","keywords":"Glycosyltransferase; Moraxella catarrhalis; Heptose; Moraxella (Branhamella) catarrhalis; Glycolipid; Biochemistry; Glucosyltransferase; Mutant; Lipid A; Microbiology; Chemistry; Neisseria meningitidis; Neisseria; Bacteria; Biology; Haemophilus influenzae; Gene; Genetics","score_opus":0.049665065717928863,"score_gpt":0.30944113318937233,"score_spread":0.25977606747144344,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129231435","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995727,0.00012032682,0.00007548224,0.0017264421,0.00019249794,0.0003173683,0.00003874228,0.000031180254,0.001770957],"genre_scores_gemma":[0.9971553,0.00022171042,0.00002727701,0.0023047095,0.00015602696,0.000048328475,0.000051376897,0.000010049028,0.000025192461],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99892396,0.000214425,0.00033394326,0.00019104264,0.000091234775,0.0002453942],"domain_scores_gemma":[0.9993043,0.00020225685,0.000054704695,0.00029916177,0.00007825208,0.000061346705],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002252668,0.0001349973,0.00033149633,0.00018082514,0.00008774568,0.0000027080996,0.00014148405,0.00019401358,0.000050973114],"category_scores_gemma":[0.00012408174,0.000088220666,0.00010983648,0.00032737636,0.00030399,0.00004033499,0.0000183944,0.00030915445,0.000023922845],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048693022,0.000888678,0.20894684,0.00011285305,0.00012489584,0.0013347451,0.0039000493,0.000022760527,0.77892256,0.0026101032,0.0019967176,0.0006528987],"study_design_scores_gemma":[0.011426294,0.0070705866,0.46338814,0.0003100394,0.00040603807,0.01150673,0.0027269202,0.00018283374,0.39719754,0.0013621639,0.10338209,0.001040606],"about_ca_topic_score_codex":0.0007259101,"about_ca_topic_score_gemma":0.00058016734,"teacher_disagreement_score":0.38172498,"about_ca_system_score_codex":0.000026290976,"about_ca_system_score_gemma":0.00024201086,"threshold_uncertainty_score":0.35975343},"labels":[],"label_agreement":null},{"id":"W2130141864","doi":"10.1086/313954","title":"Practice Guidelines for the Management of Community-Acquired Pneumonia in Adults","year":2000,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2307,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Intensive care medicine; Family medicine; Internal medicine","score_opus":0.10959314249266641,"score_gpt":0.4604644603771814,"score_spread":0.350871317884515,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130141864","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9824409,0.0006543934,0.0001062835,0.0099876495,0.0004075105,0.0013075548,0.000045804874,0.00012490204,0.004925032],"genre_scores_gemma":[0.98639566,0.0026721684,0.000057023502,0.009933396,0.0002448574,0.00026089247,0.000018424063,0.000022745304,0.00039481433],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9983015,0.00028382207,0.00089414633,0.00016298147,0.00015886799,0.00019870169],"domain_scores_gemma":[0.9966351,0.0020064667,0.00016426585,0.0005669828,0.00048892264,0.0001382886],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007401169,0.00014157043,0.00036112,0.00006163306,0.00023350448,0.000014208588,0.00013784097,0.00009424117,0.00013392238],"category_scores_gemma":[0.0019360324,0.000095487405,0.00031533063,0.0002929919,0.0002538688,0.00009437653,0.000044910696,0.00023001104,0.00003546508],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016808439,0.0138594955,0.34480205,0.0015483268,0.0016866038,0.000082750914,0.0003521757,0.0009424472,0.00011594693,0.0007704484,0.0134157855,0.6207431],"study_design_scores_gemma":[0.0043053166,0.0012451195,0.8362856,0.0004909953,0.0008998531,0.000018969058,0.0007456979,0.00036322197,0.000008202682,0.00039375553,0.15510204,0.00014121155],"about_ca_topic_score_codex":0.00008560517,"about_ca_topic_score_gemma":0.000050177485,"teacher_disagreement_score":0.6206019,"about_ca_system_score_codex":0.00003300551,"about_ca_system_score_gemma":0.00007254612,"threshold_uncertainty_score":0.38938636},"labels":[],"label_agreement":null},{"id":"W2130307906","doi":"10.1164/rccm.201501-0140oc","title":"Ten-Year Mortality after Community-acquired Pneumonia. A Prospective Cohort","year":2015,"lang":"en","type":"article","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":127,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta; Dalhousie University; Alliance for Canadian Health Outcomes Research in Diabetes","funders":"Alberta Heritage Foundation for Medical Research; Canada Research Chairs; Pfizer Canada; Abbott Canada; Capital Health","keywords":"Medicine; Hazard ratio; Emergency department; Confidence interval; Pneumonia; Community-acquired pneumonia; Prospective cohort study; Population; Internal medicine; Proportional hazards model; Absolute risk reduction; Adverse effect; Cohort; Cohort study; Pediatrics","score_opus":0.03189682510749301,"score_gpt":0.34427545848075136,"score_spread":0.31237863337325833,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130307906","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99263823,0.001698513,0.00013891401,0.0021880136,0.00033932007,0.00023029087,0.000010720995,0.000035069006,0.0027209278],"genre_scores_gemma":[0.9937088,0.000033074502,0.000079502606,0.005404897,0.0007051526,0.000022303686,0.0000018631575,0.00002708816,0.000017341457],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9975352,0.0005948352,0.0006605481,0.00020263596,0.00068984606,0.0003168836],"domain_scores_gemma":[0.9965897,0.00028911102,0.00020195353,0.00037550664,0.0014889869,0.0010547478],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0011709455,0.00024624134,0.0009050052,0.00024598883,0.0001855069,0.00002011873,0.0001254458,0.00008725954,0.000056911016],"category_scores_gemma":[0.0018984117,0.00016964457,0.00014142787,0.0004221062,0.0027491373,0.00017200546,0.00005963258,0.00082179287,0.0000071818445],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005242901,0.00019186786,0.9887467,0.000111907524,0.00016088458,0.0006566542,0.0026839538,5.9089484e-7,0.0027697198,0.0002060635,0.00019028186,0.003757067],"study_design_scores_gemma":[0.0023449077,0.017752418,0.93870234,0.00038635172,0.00081843825,0.001045636,0.02912657,0.000001625705,0.00021475754,0.0002572368,0.009143005,0.00020670844],"about_ca_topic_score_codex":0.000064105065,"about_ca_topic_score_gemma":0.000016252272,"teacher_disagreement_score":0.050044376,"about_ca_system_score_codex":0.00016535309,"about_ca_system_score_gemma":0.00038269768,"threshold_uncertainty_score":0.99996483},"labels":[],"label_agreement":null},{"id":"W2130386629","doi":"10.1093/jac/dku033","title":"β-Lactam/macrolide dual therapy versus β-lactam monotherapy for the treatment of community-acquired pneumonia in adults: a systematic review and meta-analysis","year":2014,"lang":"en","type":"review","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":103,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Community-acquired pneumonia; Internal medicine; Combination therapy; Meta-analysis; Randomized controlled trial; Pneumonia; Cohort study; Observational study; Surgery","score_opus":0.09424073182829819,"score_gpt":0.3804514289723339,"score_spread":0.28621069714403574,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130386629","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0010627101,0.9910333,0.00007884664,0.002665732,0.00015485736,0.004867494,0.00011295134,0.00001429441,0.000009823343],"genre_scores_gemma":[0.0005009789,0.9960434,0.00009511765,0.0027622872,0.0001529606,0.00022675583,0.00002039275,0.00010729068,0.000090828355],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9950267,0.0011764239,0.0028662684,0.00026242997,0.00031489367,0.00035326416],"domain_scores_gemma":[0.99320894,0.0018410885,0.00343701,0.0009621673,0.00040432203,0.00014646664],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0016007916,0.000814526,0.012570726,0.0007506257,0.00019769676,0.000052387917,0.00038897793,0.00035849673,0.00005938065],"category_scores_gemma":[0.000097172044,0.00039987324,0.006877843,0.0009304777,0.00021832988,0.00008987429,0.000014726956,0.0004931098,0.0000017427911],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018355749,0.0028412347,0.000007841657,0.50857323,0.45950267,0.000023588671,0.001557466,0.000007647302,0.00059710623,0.0000055888063,0.00051442714,0.024533646],"study_design_scores_gemma":[0.009363455,0.0046412116,0.0000120793,0.03208036,0.6608599,0.0004999502,0.0000775436,0.000007156899,0.00011503387,0.0000029659786,0.29189548,0.0004448955],"about_ca_topic_score_codex":0.000056262626,"about_ca_topic_score_gemma":0.000048574904,"teacher_disagreement_score":0.47649285,"about_ca_system_score_codex":0.00024519206,"about_ca_system_score_gemma":0.000322573,"threshold_uncertainty_score":0.9998453},"labels":[],"label_agreement":null},{"id":"W2130805002","doi":"10.1136/ebm.10.4.115","title":"Review: antibiotics active against atypical pathogens do not improve community acquired pneumonia more than   lactam antibiotics","year":2005,"lang":"en","type":"article","venue":"Evidence-Based Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Community-acquired pneumonia; Medicine; Antibiotics; Cephalosporin; Pneumonia; Internal medicine; Pediatrics; Microbiology; Biology","score_opus":0.056364695127106755,"score_gpt":0.34172770968089633,"score_spread":0.2853630145537896,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130805002","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8544823,0.011240334,0.00037594282,0.1293545,0.0011267487,0.0020250047,0.0001223166,0.0004192793,0.0008535869],"genre_scores_gemma":[0.9215773,0.018321143,0.00038674363,0.057455856,0.0017110922,0.000004211092,0.00010408046,0.000080225596,0.00035935102],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99594486,0.0006485684,0.0010641944,0.0006149621,0.00094050163,0.0007869125],"domain_scores_gemma":[0.9953895,0.0010084072,0.0004692889,0.0016495443,0.00068252964,0.00080073765],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0015607466,0.00063093903,0.0013218859,0.0003375272,0.0005915323,0.000027874767,0.0004410692,0.00039716807,0.00017927543],"category_scores_gemma":[0.0041078394,0.00046324581,0.00037611098,0.0008635646,0.0010497929,0.0003447275,0.00013969169,0.0013706167,0.00016575474],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00073047896,0.0011155113,0.025867898,0.0029015297,0.00021590947,0.00022597676,0.0006904565,0.00004333998,0.9216954,0.00003449693,0.007585298,0.03889371],"study_design_scores_gemma":[0.009731354,0.0074752765,0.495527,0.09443131,0.0035778258,0.00042555126,0.0016709922,0.0026799461,0.21152905,0.000023492665,0.17111725,0.0018109507],"about_ca_topic_score_codex":0.00005575087,"about_ca_topic_score_gemma":0.000043349646,"teacher_disagreement_score":0.71016634,"about_ca_system_score_codex":0.00045446973,"about_ca_system_score_gemma":0.0006594564,"threshold_uncertainty_score":0.9997819},"labels":[{"model":"gemma","categories":[],"domain":null,"study_design":"not_applicable","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"low"},{"model":"gpt","categories":[],"domain":null,"study_design":"design_other","genre":"review","about_ca_system":false,"about_ca_topic":false,"confidence":"medium"}],"label_agreement":"split"},{"id":"W2131253721","doi":"","title":"Hospital admission for community-acquired pneumonia in a First Nations population.","year":2014,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; NOSM University","funders":"","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Epidemiology; Incidence (geometry); Population; Logistic regression; Intensive care medicine; Pediatrics; Environmental health; Internal medicine","score_opus":0.023230409843722356,"score_gpt":0.2613051969152133,"score_spread":0.23807478707149096,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131253721","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9877728,0.000017921337,0.0002891521,0.006655845,0.00034796167,0.0015433532,0.000010909899,0.00010998272,0.0032520434],"genre_scores_gemma":[0.996317,0.000006689228,0.00006743574,0.00040223985,0.00013306733,0.0025399653,0.00005239694,0.000018109471,0.00046304404],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99922955,0.00007584507,0.00022387698,0.000120756966,0.0001081447,0.0002418283],"domain_scores_gemma":[0.9991729,0.00029233244,0.000060108094,0.0002504658,0.0000639264,0.00016024764],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035171414,0.000095483796,0.00017542666,0.00025190623,0.00045307222,0.000018705028,0.000070635804,0.00008797178,0.000008848454],"category_scores_gemma":[0.001454741,0.00008429023,0.0000797029,0.00029471455,0.000028923927,0.0000923282,0.000025649098,0.00013284883,0.000006932627],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007552711,0.0014836616,0.9492519,0.00033551836,0.000056482742,0.0000036854767,0.00078017113,0.0001222137,0.0010356032,0.0021504262,0.001024207,0.043680616],"study_design_scores_gemma":[0.0012112375,0.00011786713,0.9505237,0.000036630183,0.00002618937,0.000007243286,0.000048775262,0.0003050219,0.00007320832,0.00029078708,0.047262713,0.000096652446],"about_ca_topic_score_codex":0.00011852506,"about_ca_topic_score_gemma":0.00071170815,"teacher_disagreement_score":0.046238508,"about_ca_system_score_codex":0.00010572723,"about_ca_system_score_gemma":0.000020411248,"threshold_uncertainty_score":0.3484711},"labels":[],"label_agreement":null},{"id":"W2131254021","doi":"10.1086/597040","title":"The Pneumococcal Pilus Predicts the Absence of<i>Staphylococcus aureus</i>Co‐Colonization in Pneumococcal Carriers","year":2009,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Pilus; Streptococcus pneumoniae; Colonization; Staphylococcus aureus; Microbiology; Medicine; Pneumococcal infections; Biology; Bacteria; Virulence; Genetics; Gene; Antibiotics","score_opus":0.019994268599511304,"score_gpt":0.3433492238995038,"score_spread":0.3233549552999925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131254021","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9919009,0.00047460257,0.0000737666,0.003007662,0.0008105464,0.0010976526,0.00003674723,0.00018067035,0.0024174126],"genre_scores_gemma":[0.9969871,0.00053207116,9.903987e-7,0.0016877685,0.0005677466,0.00009206938,0.000015025071,0.000022181252,0.00009504192],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9972349,0.0004549353,0.0010446799,0.00042659233,0.00037462334,0.0004643169],"domain_scores_gemma":[0.99693644,0.0014397479,0.00030624555,0.0007014064,0.0002312272,0.00038491943],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006581447,0.00026415478,0.0005199949,0.00012780377,0.00051153294,0.000058044578,0.00026546995,0.00023852267,0.000025660827],"category_scores_gemma":[0.0027117487,0.00015431536,0.00044058447,0.00072866963,0.0009308166,0.00011978008,0.00005083234,0.00070682913,0.00003336276],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009673295,0.0010768638,0.98702955,0.000030666582,0.00008804789,0.000046009,0.000101243626,0.0003399124,0.0056695086,0.0005664154,0.0008830636,0.004071971],"study_design_scores_gemma":[0.0013870734,0.0013292164,0.9856607,0.00009079183,0.0001448639,0.000012581914,0.00008414856,0.00033500005,0.00016048437,0.001219826,0.009408933,0.00016642228],"about_ca_topic_score_codex":0.000019374815,"about_ca_topic_score_gemma":0.0000908635,"teacher_disagreement_score":0.00852587,"about_ca_system_score_codex":0.000107056585,"about_ca_system_score_gemma":0.00046301197,"threshold_uncertainty_score":0.6292798},"labels":[],"label_agreement":null},{"id":"W2132150144","doi":"10.1177/1753425912471691","title":"Identification of a synthetic muramyl peptide derivative with enhanced Nod2 stimulatory capacity","year":2013,"lang":"en","type":"article","venue":"Innate Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Muramyl dipeptide; NOD2; Peptidoglycan; Lipopolysaccharide; Chemistry; Luciferase; Inflammation; In vitro; Immune system; Biology; Immunology; Biochemistry; Innate immune system; Transfection; Cell wall","score_opus":0.016609486013392787,"score_gpt":0.25539271088668053,"score_spread":0.23878322487328774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132150144","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99618226,0.000017754388,0.0011361819,0.00026596725,0.000076329445,0.0005024348,0.000007695428,0.00007083303,0.0017405639],"genre_scores_gemma":[0.99943906,0.0000090916865,0.00006634278,0.00014567909,0.000017458031,0.000078244506,0.000005969507,0.000016738506,0.0002213908],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990482,0.00012339195,0.0003307688,0.00014779197,0.0001829073,0.00016698023],"domain_scores_gemma":[0.9985855,0.000093247334,0.0002121303,0.00048702117,0.0005407863,0.00008128847],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018025434,0.0001329986,0.00024338825,0.0001276811,0.00014784369,0.000015634227,0.00009592508,0.00008120134,0.00015066235],"category_scores_gemma":[0.0002250354,0.000101151076,0.00005594641,0.0003471923,0.00030432263,0.00017917718,0.000030788076,0.00031350186,0.000111057416],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002950384,0.0002551494,0.0072425157,0.00008474543,0.000091199894,0.000001435592,0.000996315,0.000058892554,0.99031687,0.000054287506,0.000026457677,0.00084261503],"study_design_scores_gemma":[0.00062594184,0.00026235136,0.4746713,0.00015998953,0.000071301736,0.000026018395,0.00041482164,0.00023173327,0.52306247,0.00017544333,0.00017419991,0.0001244363],"about_ca_topic_score_codex":0.0003895669,"about_ca_topic_score_gemma":0.000019460796,"teacher_disagreement_score":0.46742877,"about_ca_system_score_codex":0.00007424481,"about_ca_system_score_gemma":0.000096860815,"threshold_uncertainty_score":0.4124821},"labels":[],"label_agreement":null},{"id":"W2132212568","doi":"10.1086/657313","title":"Integrated Analysis of FOCUS 1 and FOCUS 2: Randomized, Doubled‐Blinded, Multicenter Phase 3 Trials of the Efficacy and Safety of Ceftaroline Fosamil versus Ceftriaxone in Patients with Community‐Acquired Pneumonia","year":2010,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":186,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Mount Sinai Hospital","funders":"","keywords":"Medicine; Ceftriaxone; Community-acquired pneumonia; Internal medicine; Cephalosporin; Randomized controlled trial; Adverse effect; Pneumonia; Population; Clinical trial; Surgery; Antibiotics; Microbiology","score_opus":0.05041112294790132,"score_gpt":0.3786859564127167,"score_spread":0.32827483346481534,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132212568","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970339,0.00013439138,0.000051580617,0.00013429187,0.0003450599,0.0018008223,0.0004039315,0.000026995842,0.00006903067],"genre_scores_gemma":[0.9995975,0.00016819048,0.000013905211,0.00005357802,0.000045453504,0.0000374978,0.000060735347,0.000018739205,0.0000044007843],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99510086,0.001946494,0.0022048068,0.00027187617,0.00027943408,0.00019653369],"domain_scores_gemma":[0.9879853,0.009399387,0.00118993,0.0006564249,0.0005239259,0.00024501435],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.002224231,0.00025913227,0.0026790923,0.00047895501,0.00012194629,0.000012471594,0.00012832851,0.00022177746,0.000041370367],"category_scores_gemma":[0.011921181,0.00014630855,0.00067859434,0.001065516,0.0015226526,0.00008149471,0.00011655899,0.0005564992,3.568198e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.16372201,0.008404798,0.8154609,0.00008528202,0.0032163656,0.0000017723113,0.00010280927,0.000029880233,0.0013235819,0.00002778181,0.0000047002895,0.0076201083],"study_design_scores_gemma":[0.35941017,0.0019590615,0.62989026,0.00015631111,0.007867701,5.3468506e-7,0.00003920271,0.00026443577,0.00024247088,0.000030235153,0.000034684905,0.00010490909],"about_ca_topic_score_codex":0.0004551286,"about_ca_topic_score_gemma":0.0012692964,"teacher_disagreement_score":0.19568816,"about_ca_system_score_codex":0.000023235905,"about_ca_system_score_gemma":0.00016721035,"threshold_uncertainty_score":0.99640185},"labels":[],"label_agreement":null},{"id":"W2132550034","doi":"10.1183/09031936.00015212","title":"The lectin-like domain of thrombomodulin hampers host defence in pneumococcal pneumonia","year":2012,"lang":"en","type":"article","venue":"European Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Institute of Infection and Immunity","funders":"","keywords":"Streptococcus pneumoniae; Pneumonia; Immunology; Pneumococcal pneumonia; Microbiology; Lectin; Biology; Inflammation; Thrombomodulin; Medicine; Internal medicine; Platelet; Antibiotics","score_opus":0.025280909913686377,"score_gpt":0.28394593811955937,"score_spread":0.258665028205873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132550034","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9829449,0.0013113308,0.00008778356,0.0006319035,0.0017273673,0.0002510237,0.0000020158946,0.000042044063,0.013001641],"genre_scores_gemma":[0.9974252,0.00013905531,0.000072462404,0.001144424,0.0008344539,0.0000054888255,5.225023e-7,0.00006234379,0.0003160777],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9966337,0.0010829484,0.000860285,0.00022687372,0.00048137258,0.00071482785],"domain_scores_gemma":[0.9983196,0.00019771841,0.00037169832,0.00047449788,0.00016152754,0.00047490356],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0031634201,0.00026064005,0.00037071403,0.00028303644,0.0005977572,0.00006533946,0.00031678454,0.00008182927,0.00007299427],"category_scores_gemma":[0.0003219673,0.00017388382,0.00025973265,0.00050339324,0.0003773473,0.00025340883,0.000097459175,0.0012077166,0.00019360728],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008955916,0.00033152773,0.37185326,0.000024241177,0.00007422003,0.00024967061,0.0009764536,0.000021374986,0.62309134,0.00015755973,0.00075572653,0.002375106],"study_design_scores_gemma":[0.0010453025,0.00039788688,0.76546466,0.00013438438,0.000036557933,0.0011183403,0.0005692459,0.0000031093593,0.0011444872,0.000021550812,0.22989273,0.00017173034],"about_ca_topic_score_codex":0.0000034137893,"about_ca_topic_score_gemma":0.00001566489,"teacher_disagreement_score":0.6219468,"about_ca_system_score_codex":0.00016166476,"about_ca_system_score_gemma":0.0002448005,"threshold_uncertainty_score":0.70907766},"labels":[],"label_agreement":null},{"id":"W2132710686","doi":"10.1016/j.ijid.2013.09.013","title":"Community-acquired pneumonia and tuberculosis: differential diagnosis and the use of fluoroquinolones","year":2013,"lang":"en","type":"review","venue":"International Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Bayer HealthCare","keywords":"Moxifloxacin; Medicine; Levofloxacin; Community-acquired pneumonia; Tuberculosis; Intensive care medicine; Pneumonia; Mycobacterium tuberculosis; Antibiotics; Internal medicine; Pathology; Microbiology","score_opus":0.06321315792990118,"score_gpt":0.33567554819279466,"score_spread":0.2724623902628935,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132710686","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.13316625,0.86477625,0.00001820786,0.0004846294,0.0008587877,0.00051768875,0.00013595319,0.000021028462,0.0000212201],"genre_scores_gemma":[0.067508064,0.9317935,0.000004967085,0.00016547285,0.00036491468,0.00008957705,0.000018419285,0.000028870787,0.000026225132],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978725,0.0005906939,0.0008983936,0.000122048754,0.00038890398,0.00012750339],"domain_scores_gemma":[0.99681574,0.0011758542,0.0009809833,0.00021883108,0.000632231,0.00017638618],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013769203,0.00029476878,0.0013224098,0.0004761209,0.00015871355,0.00014794838,0.00020754141,0.00015355274,0.00006468672],"category_scores_gemma":[0.0007528226,0.0001653962,0.0006579038,0.00011743398,0.00058233226,0.00024377146,0.0001788935,0.00046972686,0.0000034540892],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015597795,0.0015001467,0.040678337,0.005052544,0.008105911,0.00009916351,0.00030619258,0.0000046706673,0.00006979474,0.00028534926,0.0010689184,0.94267297],"study_design_scores_gemma":[0.005842613,0.0012288941,0.051418494,0.027536292,0.015728762,0.007904948,0.00011293128,0.000024263629,0.000016448777,0.0003776708,0.88927996,0.000528706],"about_ca_topic_score_codex":0.00013685442,"about_ca_topic_score_gemma":0.000011544177,"teacher_disagreement_score":0.9421443,"about_ca_system_score_codex":0.00008509007,"about_ca_system_score_gemma":0.00017081716,"threshold_uncertainty_score":0.67446613},"labels":[],"label_agreement":null},{"id":"W2132747505","doi":"10.1093/jac/dkf810","title":"The PROTEKT surveillance study: antimicrobial susceptibility of <i>Haemophilus influenzae</i> and <i>Moraxella catarrhalis</i> from community-acquired respiratory tract infections","year":2002,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":152,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre","funders":"","keywords":"Moraxella catarrhalis; Haemophilus influenzae; Microbiology; Ampicillin; Moraxella (Branhamella) catarrhalis; Amp resistance; Moraxella; Ciprofloxacin; Antibiotics; Moxifloxacin; Levofloxacin; Biology; Bacteria","score_opus":0.027805691687759114,"score_gpt":0.27958475331837074,"score_spread":0.25177906163061164,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132747505","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946353,0.00029423568,0.00002909104,0.0035936227,0.00042508426,0.0007851641,0.00007003352,0.000034933935,0.00013254677],"genre_scores_gemma":[0.9953358,0.00077827607,0.00006731185,0.0033267036,0.00040778978,0.000004101646,0.0000034389986,0.000046244644,0.00003030559],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99725527,0.00070397544,0.0011786672,0.0002282081,0.0003128312,0.000321035],"domain_scores_gemma":[0.99726063,0.00042086383,0.00090325985,0.000673779,0.0005553843,0.00018607112],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012785203,0.00031848843,0.00082851027,0.00018308796,0.00074252806,0.000088024135,0.00030281683,0.00019277968,0.000051233703],"category_scores_gemma":[0.00020053156,0.00022812356,0.00033362323,0.0004400532,0.0006409735,0.00022910647,0.000058820835,0.0008739963,0.0000049883533],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004624763,0.004065038,0.28667563,0.000052265263,0.0003250156,0.000028081518,0.0014332272,0.000018286508,0.69918716,0.0000015834796,0.006451316,0.001299908],"study_design_scores_gemma":[0.023592263,0.010342576,0.6438246,0.00060417765,0.00049386336,0.0017441353,0.0012496304,0.000036316243,0.19619471,0.00008116856,0.12090396,0.00093262666],"about_ca_topic_score_codex":0.00037288852,"about_ca_topic_score_gemma":0.00037051932,"teacher_disagreement_score":0.50299245,"about_ca_system_score_codex":0.000091756134,"about_ca_system_score_gemma":0.00015947492,"threshold_uncertainty_score":0.9302609},"labels":[],"label_agreement":null},{"id":"W2132950564","doi":"10.1001/jama.283.6.749","title":"A Controlled Trial of a Critical Pathway for Treatment of Community-Acquired Pneumonia","year":2000,"lang":"en","type":"article","venue":"JAMA","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":739,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Community-acquired pneumonia; Pneumonia; Confidence interval; Randomization; Levofloxacin; Quality of life (healthcare); Randomized controlled trial; Clinical trial; Emergency department; Emergency medicine; Minimal clinically important difference; Intensive care medicine; Internal medicine","score_opus":0.038846122413900605,"score_gpt":0.33589808737852844,"score_spread":0.2970519649646278,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132950564","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99167377,0.00004885864,0.000027355327,0.0023755576,0.00012820396,0.0015478835,0.000054905166,0.000026429923,0.004117029],"genre_scores_gemma":[0.9983923,0.000020753238,0.0000552338,0.0002370566,0.00018116832,0.00036309773,0.0000095642545,0.000011674742,0.0007291958],"study_design_codex":"bench_or_experimental","study_design_gemma":"randomized_trial","domain_scores_codex":[0.99914545,0.00015688283,0.00037605246,0.00006896469,0.000112542024,0.00014012438],"domain_scores_gemma":[0.9988043,0.00063445664,0.00006016274,0.00028698353,0.00013194369,0.00008216393],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016546584,0.00010040628,0.00061722763,0.000065611086,0.000092579896,0.0000049142795,0.000043702057,0.000102946186,0.00019029525],"category_scores_gemma":[0.00031618332,0.000070163376,0.00031866782,0.0000826795,0.00014902069,0.000030326399,0.00000469016,0.000044553723,0.0000067574106],"study_design_candidate":"randomized_trial","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.3679547,0.02066715,0.00053979346,0.00038774175,0.00061285787,0.00002345931,0.0032945112,0.000009186411,0.46874768,0.0012022661,0.00026350556,0.13629715],"study_design_scores_gemma":[0.89447385,0.031618837,0.0048845485,0.000092107904,0.00060267706,0.000045431916,0.00031632584,0.00019904648,0.021331903,0.00037936683,0.045918662,0.00013725036],"about_ca_topic_score_codex":0.000046333345,"about_ca_topic_score_gemma":0.000008934882,"teacher_disagreement_score":0.5265191,"about_ca_system_score_codex":0.000036524332,"about_ca_system_score_gemma":0.00011207694,"threshold_uncertainty_score":0.28611794},"labels":[],"label_agreement":null},{"id":"W2133074350","doi":"10.1016/s0732-8893(01)00249-8","title":"In vitro activity of ABT-773 versus macrolides and quinolones against resistant respiratory tract pathogens","year":2001,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire de Sherbrooke","funders":"Abbott Laboratories","keywords":"Gatifloxacin; Gemifloxacin; Trovafloxacin; Moxifloxacin; Ciprofloxacin; Microbiology; Levofloxacin; Ketolide; Erythromycin; Clarithromycin; Antibacterial agent; Azithromycin; Agar dilution; Streptococcus pneumoniae; Moraxella catarrhalis; Ofloxacin; Roxithromycin; Pharmacology; Antibiotics; Medicine; Minimum inhibitory concentration; Biology","score_opus":0.013570489370049633,"score_gpt":0.2641567330057855,"score_spread":0.2505862436357359,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133074350","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965969,0.001833944,0.000005813166,0.0004119344,0.00026679918,0.00035139185,0.00015348148,0.000043021995,0.00033672844],"genre_scores_gemma":[0.99737144,0.0015198353,0.0000031241054,0.0009326328,0.000075139804,0.0000459205,0.000022063636,0.000015246131,0.00001461195],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988915,0.00016926252,0.0002698226,0.00034105926,0.000039693037,0.00028871335],"domain_scores_gemma":[0.99860597,0.00078928715,0.000107634754,0.00021479829,0.00005861984,0.00022367349],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001545961,0.00020121998,0.0003825584,0.00025194584,0.00013482706,0.000009072616,0.000035746332,0.00017718559,0.00002658067],"category_scores_gemma":[0.0010805284,0.00017796556,0.0000848682,0.00018983844,0.00042381664,0.00009215927,0.000042906217,0.00023615547,0.0000064599053],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013147603,0.00061272143,0.33290124,0.00009822332,0.000051465988,0.0004264758,0.000060307964,0.000003999862,0.66309375,0.00005493761,0.00006122739,0.0013208942],"study_design_scores_gemma":[0.004871235,0.0008904183,0.9693944,0.00012443274,0.00024256106,0.00018239504,0.000042712887,0.000008537533,0.016306248,0.00012306655,0.0075511467,0.00026283055],"about_ca_topic_score_codex":0.000043005613,"about_ca_topic_score_gemma":0.000076222925,"teacher_disagreement_score":0.64678746,"about_ca_system_score_codex":0.000050486447,"about_ca_system_score_gemma":0.00012858098,"threshold_uncertainty_score":0.7257225},"labels":[],"label_agreement":null},{"id":"W2133269971","doi":"10.1089/10766290152773400","title":"Antibiotic Resistance in <i>Streptococcus pneumoniae</i> in Six Latin American Countries: 1993-1999 Surveillance","year":2001,"lang":"en","type":"article","venue":"Microbial Drug Resistance","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health","funders":"Pan American Health Organization","keywords":"Streptococcus pneumoniae; Microbiology; Penicillin; Antibiotics; Erythromycin; Cephalosporin; Trimethoprim; Antibiotic resistance; Sulfamethoxazole; Vancomycin; Pneumonia; Meningitis; Medicine; Virology; Biology; Staphylococcus aureus; Bacteria; Internal medicine; Pediatrics","score_opus":0.006873778136783208,"score_gpt":0.24410934022761943,"score_spread":0.2372355620908362,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133269971","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.983324,0.0012115458,0.000017893082,0.006334989,0.0002605383,0.0008250422,0.00007467957,0.00014357746,0.0078077484],"genre_scores_gemma":[0.9870852,0.0009407922,0.00013474675,0.001554985,0.00015663356,0.000037076963,0.000026253054,0.00006133748,0.010002939],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9969783,0.00021917705,0.00083580374,0.00078466535,0.00032608196,0.00085597986],"domain_scores_gemma":[0.9984781,0.00022765886,0.0002828602,0.0007013582,0.00011983196,0.00019018874],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00046236164,0.000401531,0.0008367186,0.00039086954,0.00016754042,0.000056968693,0.00025947747,0.0001304135,0.000050053768],"category_scores_gemma":[0.00018754488,0.0004055835,0.00014902714,0.0019407441,0.00049674994,0.00013716453,0.000055588538,0.00062331697,0.00012317949],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043093244,0.00032520614,0.85745645,0.00023388948,0.000022436974,0.00081872573,0.00050108746,0.000039546278,0.13391988,0.00013608632,0.005913229,0.00020250544],"study_design_scores_gemma":[0.0019715761,0.000043705182,0.59183645,0.0007680034,0.000013514116,0.000016205944,0.00014181246,0.000007987849,0.0021922076,0.000031782856,0.40254524,0.00043148577],"about_ca_topic_score_codex":0.00054535357,"about_ca_topic_score_gemma":0.121089295,"teacher_disagreement_score":0.39663202,"about_ca_system_score_codex":0.0005417642,"about_ca_system_score_gemma":0.00029542352,"threshold_uncertainty_score":0.9998396},"labels":[],"label_agreement":null},{"id":"W2133278485","doi":"10.1086/345833","title":"A Pharmacoeconomic Evaluation of 7‐Valent Pneumococcal Conjugate Vaccine in Canada","year":2003,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hospital for Sick Children; SickKids Foundation; University of Toronto; University of Calgary; Alberta Children's Hospital; Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Pneumococcal infections; Conjugate; Streptococcus pneumoniae; Intensive care medicine; Microbiology; Antibiotics","score_opus":0.05186614429945547,"score_gpt":0.38315942055222607,"score_spread":0.3312932762527706,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133278485","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99488515,0.00031874294,0.0000046776095,0.00022898734,0.00086156325,0.0005984099,0.000027005113,0.0000309304,0.0030445626],"genre_scores_gemma":[0.99869925,0.00017364165,6.766193e-7,0.0008945749,0.00010159065,0.000081034945,0.000010679532,0.000015471069,0.000023078643],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9979872,0.00045241532,0.00083270075,0.00027755855,0.00023417958,0.00021594549],"domain_scores_gemma":[0.9986914,0.00035194153,0.00019090837,0.00024521246,0.00021729693,0.0003032531],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00067512324,0.00014248404,0.00048222515,0.00011087684,0.000045119305,0.000005643916,0.000044472577,0.00006624523,0.0006496913],"category_scores_gemma":[0.001233,0.00012770398,0.00018574214,0.00019419973,0.000056912057,0.000057819136,0.000015527037,0.00023326333,0.000027356724],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002625838,0.00075859955,0.9942124,0.00004773372,0.00009891424,0.000016188593,0.0000054607203,0.00065306114,0.0009163858,0.000058058195,0.00053444866,0.0026724937],"study_design_scores_gemma":[0.0055105384,0.00025269113,0.9884486,0.0000544883,0.0005188921,0.000015047062,0.000027494847,0.00085948897,0.00051460526,0.00023279147,0.0034364278,0.00012892896],"about_ca_topic_score_codex":0.027353168,"about_ca_topic_score_gemma":0.21350226,"teacher_disagreement_score":0.18614909,"about_ca_system_score_codex":0.0005554507,"about_ca_system_score_gemma":0.00401673,"threshold_uncertainty_score":0.9791238},"labels":[],"label_agreement":null},{"id":"W2133329506","doi":"10.1093/jac/dkq225","title":"A province-level risk factor analysis of fluoroquinolone consumption patterns in Canada (2000-06)","year":2010,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; University of Guelph","funders":"Public Health Agency of Canada","keywords":"Levofloxacin; Ciprofloxacin; Medicine; Respiratory tract infections; Socioeconomic status; Defined daily dose; Medical prescription; Demography; Internal medicine; Environmental health; Antibiotics; Population; Pharmacology; Biology; Respiratory system; Microbiology","score_opus":0.01597044137850071,"score_gpt":0.2555050939236397,"score_spread":0.23953465254513898,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133329506","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982082,0.000016935797,0.00020056253,0.00090314966,0.00027800823,0.00013551535,0.00023765357,0.0000049296937,0.000015013522],"genre_scores_gemma":[0.99851346,0.00036281772,0.0002617867,0.0006838777,0.000108950444,5.4677366e-7,0.0000062570766,0.000014978667,0.000047313435],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99878824,0.000042765892,0.00063317176,0.0001216554,0.00022315733,0.00019104169],"domain_scores_gemma":[0.9988276,0.00004912375,0.00063046283,0.00017333966,0.00020620189,0.00011331461],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016461093,0.00013762884,0.0005949061,0.0005339623,0.000036548015,0.000010246324,0.000106565436,0.000108738495,0.00038324078],"category_scores_gemma":[0.000042249067,0.00010914207,0.0002472501,0.00032163702,0.00005342004,0.00008051557,0.000008529249,0.0005694231,0.0000021896428],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009137673,0.00013934862,0.5311659,0.000023545335,0.0004700637,0.00003484996,0.00010954088,0.000026846577,0.46560028,5.899674e-7,0.00022160207,0.0021160631],"study_design_scores_gemma":[0.0018852536,0.00013302657,0.8894444,0.000069738584,0.00036504943,0.00015487678,0.00002047081,0.00008641805,0.10618502,0.0000010045281,0.0015559657,0.00009876202],"about_ca_topic_score_codex":0.08099866,"about_ca_topic_score_gemma":0.51681757,"teacher_disagreement_score":0.43581888,"about_ca_system_score_codex":0.00025493017,"about_ca_system_score_gemma":0.0019276642,"threshold_uncertainty_score":0.92512107},"labels":[],"label_agreement":null},{"id":"W2133979383","doi":"10.1086/511159","title":"Infectious Diseases Society of America/American Thoracic Society Consensus Guidelines on the Management of Community-Acquired Pneumonia in Adults","year":2007,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6244,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; McMaster University Medical Centre","funders":"Sanofi; Pfizer; AstraZeneca; Eli Lilly and Company; Centers for Medicare and Medicaid Services; GlaxoSmithKline; American Thoracic Society","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Intensive care medicine; Consensus conference; Family medicine; Internal medicine","score_opus":0.07863379322655102,"score_gpt":0.4257861761166469,"score_spread":0.34715238289009587,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133979383","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99463373,0.0002766231,0.00024613476,0.0020125473,0.0003405301,0.00091325893,0.00013677019,0.00022467022,0.0012157209],"genre_scores_gemma":[0.99119,0.0015385926,0.00006697909,0.0067780963,0.00021120415,0.000075338794,0.000035420097,0.000047709993,0.00005663995],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9963673,0.00056724413,0.0017406181,0.00037817,0.0004664283,0.0004802359],"domain_scores_gemma":[0.9947133,0.0025765763,0.00083848654,0.0009981687,0.0005061261,0.0003673489],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010287984,0.00037981223,0.0010427756,0.00013226115,0.00035381297,0.000016820095,0.00023770017,0.00016069978,0.000042780357],"category_scores_gemma":[0.00075536815,0.00027403067,0.0013567588,0.0012418813,0.0023414798,0.00004883949,0.00019348889,0.00061992713,0.000017165154],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034053787,0.006311753,0.93035215,0.0008533981,0.0010484436,0.000029214005,0.0002744551,0.0002235109,0.00037870175,0.00013454325,0.004312449,0.055740852],"study_design_scores_gemma":[0.0023791417,0.0022456439,0.9852077,0.00091148034,0.0007365392,0.000013698824,0.0033537478,0.00032164686,0.00009120594,0.00032241634,0.00412077,0.00029604204],"about_ca_topic_score_codex":0.00034503837,"about_ca_topic_score_gemma":0.00008676238,"teacher_disagreement_score":0.05544481,"about_ca_system_score_codex":0.00014260832,"about_ca_system_score_gemma":0.00018175451,"threshold_uncertainty_score":0.9999712},"labels":[],"label_agreement":null},{"id":"W2134887175","doi":"10.1093/jac/dks113","title":"Assessment of the activity of ceftaroline against clinical isolates of penicillin-intermediate and penicillin-resistant Streptococcus pneumoniae with elevated MICs of ceftaroline using an in vitro pharmacodynamic model","year":2012,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Health Sciences Centre","funders":"University of Manitoba","keywords":"Streptococcus pneumoniae; Penicillin; Microbiology; Cephalosporin; Medicine; Pharmacodynamics; Antibiotics; In vitro; Antibacterial agent; Chemistry; Pharmacology; Pharmacokinetics; Biology","score_opus":0.02858272702961247,"score_gpt":0.34441880703921673,"score_spread":0.3158360800096043,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134887175","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99824506,0.00005654708,0.00068140007,0.00033286578,0.00015358829,0.00040845622,0.00010657077,0.000004817132,0.000010698117],"genre_scores_gemma":[0.9976017,0.0007543358,0.0011998521,0.0002810095,0.000115834555,8.056214e-7,0.00000441531,0.000037941438,0.0000041285302],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99743944,0.00020658204,0.0015791815,0.00017659581,0.00030953906,0.0002886397],"domain_scores_gemma":[0.99659795,0.00012652358,0.0021973755,0.00030017056,0.00062002713,0.00015795142],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009779816,0.00025916184,0.0012111965,0.0002750106,0.00004136642,0.00000546515,0.00020304715,0.00017198206,0.000007476971],"category_scores_gemma":[0.00004377828,0.00016767031,0.00034971302,0.00031332366,0.00042109317,0.0002212554,0.000042844367,0.0006236913,3.6402096e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00213147,0.0025649187,0.118573904,0.00019754698,0.00032106123,0.0000038397657,0.00024319087,0.0049594343,0.87056494,0.000001239215,0.000004077127,0.0004343632],"study_design_scores_gemma":[0.0069686947,0.0010108917,0.112838134,0.00053135783,0.00033957482,0.000060935396,0.00006009718,0.06885315,0.8091619,0.0000043009127,0.000015752563,0.00015519322],"about_ca_topic_score_codex":0.000037656828,"about_ca_topic_score_gemma":0.00002747666,"teacher_disagreement_score":0.06389371,"about_ca_system_score_codex":0.00009430152,"about_ca_system_score_gemma":0.0005857405,"threshold_uncertainty_score":0.68373966},"labels":[],"label_agreement":null},{"id":"W2134943351","doi":"10.1542/peds.2005-1983","title":"Effect of Pneumococcal Conjugate Vaccine on Nasopharyngeal Bacterial Colonization During Acute Otitis Media","year":2006,"lang":"en","type":"article","venue":"PEDIATRICS","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":103,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Center for Research Resources; National Institute on Deafness and Other Communication Disorders; Agency for Healthcare Research and Quality; University of Calgary","keywords":"Moraxella catarrhalis; Medicine; Streptococcus pneumoniae; Haemophilus influenzae; Pneumococcal conjugate vaccine; Vaccination; Moraxella (Branhamella) catarrhalis; Incidence (geometry); Otitis; Pneumococcal infections; Colonization; Immunology; Microbiology; Antibiotics; Internal medicine; Surgery; Biology","score_opus":0.003961820634085179,"score_gpt":0.24105493077335247,"score_spread":0.2370931101392673,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134943351","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99696296,0.00005167501,0.000016188198,0.00021826476,0.0015223657,0.00038777536,0.00007014843,0.00010114662,0.00066945597],"genre_scores_gemma":[0.99700284,0.00014207633,0.000010276845,0.000047052938,0.002400449,0.0000226095,0.00015011957,0.000029476423,0.00019507685],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99885786,0.00008510683,0.00034531136,0.00021671601,0.00025955602,0.00023546205],"domain_scores_gemma":[0.99924785,0.00020010263,0.00014712689,0.00018680496,0.000107077205,0.000111053356],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015609126,0.00017800288,0.0003664386,0.00023746354,0.000102351434,0.000013805626,0.00005960788,0.00015271801,0.00010035293],"category_scores_gemma":[0.00014516864,0.00014803297,0.00011581935,0.00038732766,0.000029196466,0.00006950784,0.000029211733,0.00019475441,0.000055435074],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010964341,0.0003380582,0.36104116,0.00049221306,0.00006981551,0.00035318505,0.000055870976,0.00023006232,0.6347708,0.000104191466,0.00109044,0.0003577377],"study_design_scores_gemma":[0.007577656,0.0030853017,0.853144,0.00004394409,0.0010094712,0.00021094075,0.0000027350109,0.000115238196,0.132835,0.000022383661,0.0016858156,0.00026751027],"about_ca_topic_score_codex":0.000018799583,"about_ca_topic_score_gemma":0.0000098343735,"teacher_disagreement_score":0.50193584,"about_ca_system_score_codex":0.000075234086,"about_ca_system_score_gemma":0.00006870138,"threshold_uncertainty_score":0.60366094},"labels":[],"label_agreement":null},{"id":"W2135256593","doi":"10.1016/j.jpeds.2008.04.006","title":"Bacterial meningitis score is valid in other populations of children","year":2008,"lang":"en","type":"letter","venue":"The Journal of Pediatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Bacterial meningitis; Meningitis; Medicine; Pediatrics; Internal medicine","score_opus":0.04504245248621479,"score_gpt":0.2901615308390833,"score_spread":0.2451190783528685,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135256593","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8892208,0.0005464802,0.000036763904,0.108253114,0.0012201107,0.0002445044,0.00012877717,0.00000849201,0.00034099008],"genre_scores_gemma":[0.5053278,0.009452983,0.00054450997,0.36764106,0.11330298,0.000009546932,0.00017194793,0.00036234938,0.0031867782],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.99832624,0.00014528321,0.0007603056,0.00008411522,0.00049052207,0.00019350398],"domain_scores_gemma":[0.99848014,0.000118024764,0.0008875317,0.00024907134,0.00021033428,0.00005492267],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029383955,0.00017775828,0.0005090371,0.0005788456,0.0000722194,0.000008449329,0.00019281232,0.00039105138,0.00017695608],"category_scores_gemma":[0.000114364106,0.0001139672,0.00026477608,0.00038486155,0.00007822959,0.00006214159,0.00002857802,0.001576653,0.000008145251],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004263517,0.00008273549,0.18131074,0.00009963738,0.00005310602,0.00016177764,0.00054265687,0.00003100858,0.00068763416,0.0000010990035,0.816888,0.00009897318],"study_design_scores_gemma":[0.00632036,0.002068446,0.5192552,0.000664158,0.0055644987,0.014447448,0.0000646079,0.0000054612647,0.0006376399,0.00028621836,0.4498747,0.0008112435],"about_ca_topic_score_codex":0.00007635208,"about_ca_topic_score_gemma":0.0000065941645,"teacher_disagreement_score":0.38389295,"about_ca_system_score_codex":0.000081440616,"about_ca_system_score_gemma":0.00033845566,"threshold_uncertainty_score":0.68498605},"labels":[],"label_agreement":null},{"id":"W2135308530","doi":"10.1016/j.rmed.2013.04.003","title":"Mortality differences among hospitalized patients with community-acquired pneumonia in three world regions: Results from the Community-Acquired Pneumonia Organization (CAPO) International Cohort Study","year":2013,"lang":"en","type":"article","venue":"Respiratory Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":90,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Alberta; Università degli Studi di Milano; University of Louisville","keywords":"Medicine; Community-acquired pneumonia; Confounding; Pneumonia; Intensive care unit; Internal medicine; Cohort; Incidence (geometry); Cohort study; Logistic regression; Intensive care medicine","score_opus":0.03932651521189381,"score_gpt":0.28160968636802564,"score_spread":0.24228317115613182,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135308530","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99129623,0.000056462366,0.000036704743,0.0025629664,0.0006605652,0.0038730649,0.00008466037,0.00026016153,0.0011691916],"genre_scores_gemma":[0.9961362,0.000025790257,0.000011518742,0.0022982357,0.00033494565,0.00029387066,0.00067259854,0.000089950954,0.00013692242],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99362534,0.00239139,0.0015128462,0.00058536883,0.0013584937,0.0005265345],"domain_scores_gemma":[0.994441,0.0011954084,0.00073629525,0.002231713,0.0010424143,0.00035316756],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0019019608,0.00061725685,0.0010851648,0.000503291,0.0012133023,0.00011309383,0.0009876562,0.00021434396,0.0003591485],"category_scores_gemma":[0.001868659,0.00038243158,0.00009448776,0.0015671334,0.0011956738,0.0005331187,0.00032960295,0.0012467725,0.000051391853],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019181398,0.0021004574,0.9888294,0.000026470498,0.0005091959,0.000027445638,0.0044038664,0.000009816617,0.0032378125,0.00001831649,0.00043032825,0.00021508487],"study_design_scores_gemma":[0.009477998,0.0016277856,0.98307794,0.00078224746,0.00037510516,0.0000035383366,0.0034489012,0.000065807515,0.000039697738,0.00017173598,0.0005358295,0.00039338466],"about_ca_topic_score_codex":0.020954771,"about_ca_topic_score_gemma":0.03069805,"teacher_disagreement_score":0.009743279,"about_ca_system_score_codex":0.00037452672,"about_ca_system_score_gemma":0.00019920799,"threshold_uncertainty_score":0.99986273},"labels":[],"label_agreement":null},{"id":"W2135617662","doi":"10.1093/jac/48.suppl_2.33","title":"Activity of the ketolide antibacterial telithromycin against typical community-acquired respiratory pathogens","year":2001,"lang":"en","type":"review","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre","funders":"","keywords":"Ketolide; Telithromycin; Antibacterial agent; Medicine; Microbiology; Antibacterial activity; Antibiotics; Biology; Bacteria","score_opus":0.05534205803447925,"score_gpt":0.33805515906918104,"score_spread":0.2827131010347018,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135617662","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.63856673,0.35390502,0.000059306483,0.0012803968,0.0035498776,0.0016119203,0.00020746209,0.000054523924,0.000764731],"genre_scores_gemma":[0.0051347576,0.99106324,0.00007202562,0.0020164803,0.0014856345,0.0000025919214,0.000007548723,0.00011484029,0.00010289383],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9964523,0.0011483568,0.0014747793,0.00020164465,0.00037128598,0.00035167744],"domain_scores_gemma":[0.99614483,0.00021017178,0.002265879,0.00082594465,0.00037004962,0.00018310736],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00087329804,0.0005221485,0.0028860203,0.00037013163,0.0002894232,0.000039212708,0.0005833237,0.000671768,0.00007723775],"category_scores_gemma":[0.00016515821,0.0003159306,0.0021646845,0.0007297457,0.00043432493,0.000119021846,0.000096256146,0.0017022198,0.000007993897],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00066149194,0.0019444262,0.00042538944,0.006120853,0.0013852484,0.00013655909,0.00019661484,0.0000014527608,0.5325897,0.0000027210076,0.005792939,0.45074263],"study_design_scores_gemma":[0.0018240173,0.00047356114,0.0011130469,0.011527099,0.0009074171,0.0016810065,0.000012296243,2.3674774e-7,0.0086716665,0.000001992368,0.9735131,0.0002745301],"about_ca_topic_score_codex":0.000008015944,"about_ca_topic_score_gemma":0.0000057395887,"teacher_disagreement_score":0.9677202,"about_ca_system_score_codex":0.00025690204,"about_ca_system_score_gemma":0.0014612863,"threshold_uncertainty_score":0.99992925},"labels":[],"label_agreement":null},{"id":"W2135836121","doi":"10.1086/591403","title":"Spectrum of Microbial Etiology of Community‐Acquired Pneumonia in Hospitalized Patients: Implications for Selection of the Population for Enrollment in Clinical Trials","year":2008,"lang":"en","type":"review","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster Children's Hospital; McMaster University","funders":"","keywords":"Medicine; Etiology; Community-acquired pneumonia; Intensive care medicine; Pneumonia; Randomization; Clinical trial; Intensive care unit; Population; Internal medicine","score_opus":0.18017447510326098,"score_gpt":0.5007132604472573,"score_spread":0.32053878534399627,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135836121","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.891403,0.08638836,0.00013852415,0.00033569348,0.0024554129,0.01688181,0.0023025044,0.00006090143,0.00003375114],"genre_scores_gemma":[0.39122576,0.6064037,0.000012027834,0.00011852662,0.0002703482,0.0011038196,0.00080405566,0.000051018815,0.000010775059],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9888394,0.004304474,0.006130523,0.00034581072,0.00012058723,0.0002591933],"domain_scores_gemma":[0.9863235,0.0089964075,0.0035666637,0.00062390947,0.0003712703,0.00011824398],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0023564573,0.00032910757,0.00447028,0.00043501114,0.00013236016,0.0000045017905,0.00022386496,0.00075440994,0.000007800914],"category_scores_gemma":[0.015900703,0.00023435269,0.003231931,0.00070058764,0.0004748106,0.000053742384,0.00008310818,0.00051088864,5.9362276e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021378518,0.007661251,0.9232817,0.0043966854,0.00042345762,1.1174295e-7,0.000020033767,0.000012398323,0.000018626864,0.00013766496,0.0002141118,0.06362011],"study_design_scores_gemma":[0.0064182426,0.0029606742,0.96161085,0.0026308117,0.0018886622,0.0000045428524,0.000004924267,0.000006969864,0.0000037446914,0.0006030397,0.02368271,0.00018484076],"about_ca_topic_score_codex":0.000101047706,"about_ca_topic_score_gemma":0.0003187312,"teacher_disagreement_score":0.5200153,"about_ca_system_score_codex":0.00021304392,"about_ca_system_score_gemma":0.0007354599,"threshold_uncertainty_score":0.9923888},"labels":[],"label_agreement":null},{"id":"W2136196337","doi":"10.1128/aac.01388-08","title":"In Vitro Activity of Iclaprim against Respiratory and Bacteremic Isolates of <i>Streptococcus pneumoniae</i>","year":2009,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Trimethoprim; Streptococcus pneumoniae; Sulfamethoxazole; Microbiology; Dihydrofolate reductase; Pneumococcal infections; Biology; Antibacterial agent; Antibiotics; Immunology","score_opus":0.01252061040991811,"score_gpt":0.2678329943268922,"score_spread":0.25531238391697414,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136196337","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970397,0.00003322515,0.000005024664,0.0022378303,0.000043663513,0.00026273754,0.000015448635,0.0000138114665,0.00034859008],"genre_scores_gemma":[0.98970497,0.00067188166,0.000021111924,0.009504229,0.00003855242,0.0000018720517,0.000002293086,0.000012115206,0.000042972977],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99925625,0.000028076383,0.0002675755,0.00021305554,0.000065201086,0.00016985474],"domain_scores_gemma":[0.9995759,0.000018660832,0.0001327731,0.000162517,0.000039898936,0.000070210735],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008364464,0.00015085575,0.00038018005,0.00012654172,0.000039277682,0.000007901716,0.000044427863,0.000116363575,0.000014532382],"category_scores_gemma":[0.000006646991,0.00012882614,0.00007197703,0.000147826,0.0001235749,0.000095994415,0.000014634155,0.0001457632,7.5852046e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016135944,0.00034325523,0.07035687,0.00006644931,0.000030547133,0.000006446227,0.00019129681,5.722315e-7,0.914091,0.0000031837037,0.00042671975,0.014322326],"study_design_scores_gemma":[0.0018358307,0.00026514463,0.31873265,0.00009998782,0.00001831474,0.000011104919,0.000011317353,0.00001537572,0.6725197,0.000013277038,0.006373613,0.00010369181],"about_ca_topic_score_codex":0.000016604734,"about_ca_topic_score_gemma":0.000002883052,"teacher_disagreement_score":0.24837579,"about_ca_system_score_codex":0.00001646009,"about_ca_system_score_gemma":0.000042495023,"threshold_uncertainty_score":0.52533776},"labels":[],"label_agreement":null},{"id":"W2136661443","doi":"10.1017/s0950268810000555","title":"Use of serology and urine antigen detection to estimate the proportion of adult community-acquired pneumonia attributable to<i>Streptococcus pneumoniae</i>","year":2010,"lang":"en","type":"article","venue":"Epidemiology and Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"U.S. Public Health Service; Centers for Disease Control and Prevention; Sanofi","keywords":"Serology; Streptococcus pneumoniae; Pneumonia; Community-acquired pneumonia; Medicine; Urine; Antigen; Immunology; Virology; Microbiology; Antibody; Biology; Internal medicine","score_opus":0.0452614165565265,"score_gpt":0.3512728400348506,"score_spread":0.3060114234783241,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136661443","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99361473,0.000015303849,0.0020315691,0.0030297271,0.00039014986,0.00079733826,0.000011637218,0.000059809496,0.000049723523],"genre_scores_gemma":[0.99839884,0.00010274974,0.00016478998,0.0010976542,0.00007354342,0.000097250835,0.000012044494,0.000013504752,0.00003961317],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99827695,0.0005572618,0.00059854076,0.0002345002,0.00006967819,0.0002630857],"domain_scores_gemma":[0.99825525,0.00059973786,0.00029370937,0.00036989353,0.00031701062,0.00016441924],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012736056,0.00016991238,0.00055012887,0.00020641925,0.0003948167,0.0000058536125,0.000045135064,0.00027940026,0.000012153299],"category_scores_gemma":[0.0031718053,0.00012109236,0.000070744,0.00031104573,0.00034460673,0.00013947542,0.000088992325,0.0005058337,0.0000059259023],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006194288,0.000074923606,0.53101015,0.000053166863,0.000033832777,5.43796e-7,0.00009898417,0.00013148919,0.4646565,0.00015391855,0.000026343918,0.003698218],"study_design_scores_gemma":[0.00032029432,0.0016412071,0.9402125,0.00004479787,0.00009091725,0.00023814349,0.000015901971,0.0004547033,0.05264292,0.00028349596,0.0039587263,0.00009639522],"about_ca_topic_score_codex":0.0011212501,"about_ca_topic_score_gemma":0.0016308948,"teacher_disagreement_score":0.4120136,"about_ca_system_score_codex":0.000018260265,"about_ca_system_score_gemma":0.000033959244,"threshold_uncertainty_score":0.49380028},"labels":[],"label_agreement":null},{"id":"W2136776984","doi":"10.1093/jac/45.3.401","title":"Pneumococcal macrolide resistance—not a myth","year":2000,"lang":"en","type":"letter","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Microbiology; Medicine; Streptococcus pneumoniae; Antibiotics; Biology","score_opus":0.012570098060083837,"score_gpt":0.2607238892572444,"score_spread":0.24815379119716055,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136776984","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.044414863,0.00016173262,0.000032672688,0.9498083,0.0010827745,0.0003293726,0.000054547454,0.00005196589,0.004063764],"genre_scores_gemma":[0.00275554,0.0023934774,0.00034070638,0.96751136,0.012546853,0.0000026229443,0.000027025142,0.00016055856,0.014261837],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99737936,0.00010886834,0.0011042687,0.0003235569,0.00054059207,0.00054336083],"domain_scores_gemma":[0.998117,0.0000771713,0.00086065516,0.00044159478,0.0003271945,0.00017634957],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00024629475,0.0005016689,0.0013058168,0.00056585,0.0001411008,0.00008494152,0.0003142932,0.0010785947,0.0008361494],"category_scores_gemma":[0.000026321393,0.0003950118,0.0011057127,0.00028585264,0.0001999691,0.00012149918,0.000014906761,0.003589413,0.00009308675],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00058679085,0.0001371434,0.000056304903,0.00018223005,0.00041728045,0.0026549948,0.00008321044,0.0000018947883,0.22403502,5.1972785e-7,0.7710591,0.00078550924],"study_design_scores_gemma":[0.002982251,0.00034365137,0.00035438177,0.00085480686,0.0002881785,0.005709212,0.000004218524,5.8179586e-7,0.023598257,0.000021590136,0.9654926,0.00035026605],"about_ca_topic_score_codex":0.000003734593,"about_ca_topic_score_gemma":0.0000021174894,"teacher_disagreement_score":0.20043677,"about_ca_system_score_codex":0.0002284889,"about_ca_system_score_gemma":0.00071760156,"threshold_uncertainty_score":0.99985015},"labels":[],"label_agreement":null},{"id":"W2136927419","doi":"10.7196/samj.515","title":"Management of Community-acquired Pneumonia in Adults","year":2007,"lang":"en","type":"article","venue":"South African Medical Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Guideline; Medicine; Intensive care medicine; Pneumonia; Antibiotic resistance; Community-acquired pneumonia; Antibiotics; Internal medicine; Pathology","score_opus":0.016905851695407873,"score_gpt":0.2926161686341365,"score_spread":0.2757103169387286,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136927419","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98234355,0.000071168666,0.00077649456,0.0015727662,0.00026597164,0.0001395513,0.0000027418141,0.000024694915,0.0148030305],"genre_scores_gemma":[0.99881434,0.000051963823,0.00014806863,0.0006903409,0.00017397989,0.0000029412436,0.0000018978861,0.000014023467,0.00010245401],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99793243,0.00016562018,0.0006398683,0.00008584788,0.00080155703,0.00037468068],"domain_scores_gemma":[0.9987583,0.000097576485,0.00017030259,0.00023409526,0.00008839809,0.00065133546],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0020754458,0.00012101341,0.00031395856,0.00033658813,0.00015112758,0.0000074284326,0.0002068966,0.00012924646,0.0002881334],"category_scores_gemma":[0.00019991401,0.00009223316,0.00013009309,0.000505101,0.0002477683,0.000037159432,0.00007032841,0.00096208556,0.00002180098],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022814518,0.004815097,0.57530266,0.0013713925,0.00089565205,0.017241815,0.045555037,0.000018912517,0.007501402,0.0013159728,0.0006683928,0.34303224],"study_design_scores_gemma":[0.0048768097,0.0007774609,0.9553999,0.0016979565,0.00010061619,0.0015839284,0.029673362,0.000028786631,0.00017165366,0.00023720895,0.0052855657,0.0001667605],"about_ca_topic_score_codex":0.00001891997,"about_ca_topic_score_gemma":0.000025484294,"teacher_disagreement_score":0.38009724,"about_ca_system_score_codex":0.00009609304,"about_ca_system_score_gemma":0.00014607869,"threshold_uncertainty_score":0.41798365},"labels":[],"label_agreement":null},{"id":"W2137296116","doi":"10.1002/j.2055-2335.2005.tb00334.x","title":"Paediatric Severe Community‐Acquired Pneumonia in India","year":2005,"lang":"en","type":"article","venue":"Journal of Pharmacy Practice and Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Hospital for Sick Children","keywords":"Medicine; Antipyretic; Intervention (counseling); Antibiotics; Pneumonia; Cohort; Dosing; Community-acquired pneumonia; Population; Internal medicine; Analgesic; Anesthesia; Nursing","score_opus":0.09645980096750545,"score_gpt":0.46724178102068453,"score_spread":0.3707819800531791,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137296116","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9678086,0.0023498186,0.000002493964,0.021961775,0.00012735833,0.00019214294,0.0000018847524,0.000007874219,0.007548054],"genre_scores_gemma":[0.9924194,0.00477344,0.00013630842,0.001560839,0.0007827602,0.0000041358758,8.650849e-7,0.000014190979,0.0003080674],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9971315,0.0013484773,0.0004538409,0.000087652916,0.00065904285,0.00031944414],"domain_scores_gemma":[0.9972347,0.0015224664,0.00019946585,0.00015326063,0.00058674806,0.00030334087],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.005331135,0.00009542391,0.00024126335,0.0009146233,0.00038141274,0.00008041409,0.0001426141,0.00006693574,0.00009361472],"category_scores_gemma":[0.0018780372,0.000071155584,0.00006604806,0.0008774088,0.0001564209,0.00085706974,0.0000952343,0.0024324658,0.000039776467],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0034171415,0.0065123443,0.37396055,0.00052783726,0.00047799607,0.0036486192,0.009815631,0.00010143753,0.41167575,0.00015767773,0.011937872,0.17776717],"study_design_scores_gemma":[0.007337468,0.0009262291,0.12856339,0.00012101904,0.00016489632,0.009470076,0.0036938775,0.00016798989,0.0019036928,0.00004988005,0.8474689,0.00013258908],"about_ca_topic_score_codex":0.00008134333,"about_ca_topic_score_gemma":0.000012960281,"teacher_disagreement_score":0.835531,"about_ca_system_score_codex":0.00014228381,"about_ca_system_score_gemma":0.0006183591,"threshold_uncertainty_score":0.999869},"labels":[],"label_agreement":null},{"id":"W2137514241","doi":"10.1017/s1481803500015293","title":"Prevalence of pneumonia in children under 12 years of age who undergo abdominal radiography in the emergency department","year":2007,"lang":"en","type":"article","venue":"Canadian Journal of Emergency Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire de Sherbrooke; Université de Sherbrooke","funders":"","keywords":"Medicine; Chest radiograph; Emergency department; Pneumonia; Abdominal pain; Context (archaeology); Radiography; Pediatrics; Community-acquired pneumonia; Surgery; Internal medicine","score_opus":0.03682581858135999,"score_gpt":0.3164630481159435,"score_spread":0.27963722953458353,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137514241","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99156606,0.0039838427,0.00008177231,0.0011438811,0.0012641994,0.00034221372,0.000012537483,0.0000020231814,0.0016034702],"genre_scores_gemma":[0.99649525,0.002914338,0.000016756023,0.0001299309,0.00031140322,0.00000318046,0.0000030334706,0.000015150509,0.00011096775],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99738336,0.00012430092,0.0015102503,0.00014859084,0.00044400842,0.00038949572],"domain_scores_gemma":[0.9985657,0.000064228145,0.0005068397,0.00028115304,0.00015792152,0.00042416935],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016001909,0.00016460488,0.0005208799,0.0013898811,0.00004427606,0.0000010375927,0.00028031124,0.00010154612,0.0007821578],"category_scores_gemma":[0.000202521,0.00011971774,0.00022522503,0.0011445022,0.00021870868,0.00007505929,0.000007360525,0.00043299663,0.0000012395753],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046603356,0.00012018747,0.9901558,0.000118687894,0.000121581696,0.00024292602,0.0013116118,0.00002990992,0.0052137664,0.00015507241,0.0013945352,0.0010893024],"study_design_scores_gemma":[0.0011612521,0.0009967583,0.99456686,0.00049400236,0.00020046724,0.00017119765,0.0005544637,0.0000031491081,0.00006393431,0.00031134565,0.0013814191,0.00009513792],"about_ca_topic_score_codex":0.0037791035,"about_ca_topic_score_gemma":0.033409897,"teacher_disagreement_score":0.029630793,"about_ca_system_score_codex":0.000115351075,"about_ca_system_score_gemma":0.0004968577,"threshold_uncertainty_score":0.98422784},"labels":[],"label_agreement":null},{"id":"W2137803439","doi":"10.1128/aac.02330-13","title":"Telavancin for Hospital-Acquired Pneumonia: Clinical Response and 28-Day Survival","year":2014,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Astellas Pharma; Infectious Diseases Society of America","keywords":"Pneumonia; Medicine; Internal medicine; Intensive care medicine","score_opus":0.020806012483340033,"score_gpt":0.31699172799956277,"score_spread":0.29618571551622275,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137803439","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9750941,0.000016782125,0.00051795953,0.023036912,0.000599593,0.00047611416,0.000018350369,0.00006115182,0.00017903752],"genre_scores_gemma":[0.9834191,0.000740725,0.00018486383,0.014414427,0.00043032694,0.0000134078,0.00000997717,0.00004102775,0.0007461025],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988205,0.00012521034,0.00032943478,0.0003717662,0.00008590562,0.0002671897],"domain_scores_gemma":[0.9992205,0.00022056565,0.000090757094,0.00021511149,0.00006826363,0.00018481394],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00070158293,0.00019369574,0.00041491885,0.00006169959,0.00021839372,0.000041939704,0.000054166183,0.00017850827,0.00003014717],"category_scores_gemma":[0.00012832691,0.00015558058,0.00014107165,0.00007561656,0.00020600394,0.000060463233,0.000020672012,0.00010229868,0.000008671001],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025484222,0.0012703136,0.4576393,0.0001876885,0.00042005914,0.000022876562,0.0007185346,9.814335e-7,0.40735146,0.00014096027,0.06373287,0.06596653],"study_design_scores_gemma":[0.003967259,0.0013164865,0.51563054,0.00004923371,0.000057840276,0.000028241566,0.000021765094,0.00007427391,0.002751254,0.00003286942,0.47588643,0.00018383673],"about_ca_topic_score_codex":0.000008235361,"about_ca_topic_score_gemma":0.000004432591,"teacher_disagreement_score":0.41215354,"about_ca_system_score_codex":0.000013806621,"about_ca_system_score_gemma":0.000043783395,"threshold_uncertainty_score":0.63443923},"labels":[],"label_agreement":null},{"id":"W2138064894","doi":"10.1136/thoraxjnl-2011-200835","title":"Cigarette smoke and platelet-activating factor receptor dependent adhesion of <i>Streptococcus pneumoniae</i> to lower airway cells","year":2012,"lang":"en","type":"article","venue":"Thorax","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University Medical Centre","funders":"Vetenskapsrådet; National Health and Medical Research Council; Royal Hobart Hospital Research Foundation","keywords":"Platelet-activating factor receptor; Medicine; Platelet-activating factor; Flow cytometry; Streptococcus pneumoniae; Adhesion; Immunology; Immunostaining; Respiratory epithelium; Receptor; Lung; Andrology; Internal medicine; Biology; Microbiology; Chemistry; Immunohistochemistry; Antagonist","score_opus":0.03160813239959167,"score_gpt":0.2954946560488187,"score_spread":0.26388652364922704,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138064894","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996511,0.000112904076,0.00006800166,0.00043999695,0.0006372413,0.0005286289,0.000038961658,0.00007494225,0.0015883273],"genre_scores_gemma":[0.9985113,0.000032516775,0.000097714925,0.00052046496,0.0002695393,0.00003350189,0.000004717372,0.000033662152,0.00049658056],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987478,0.00005551936,0.00031538025,0.00023695378,0.00027185335,0.00037246474],"domain_scores_gemma":[0.9990177,0.00009150884,0.0001238542,0.00030083949,0.00008022566,0.0003858735],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018389407,0.0001986211,0.00033568364,0.00012449977,0.00010848436,0.000013069959,0.00006472747,0.00014887443,0.00031046916],"category_scores_gemma":[0.00007434194,0.00016030343,0.000084258245,0.0001895261,0.000050377996,0.00014155373,0.000077389115,0.0002595612,0.000069337024],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004834235,0.00016756819,0.04697544,0.000067227076,0.00004201968,0.0000056798935,0.0004897213,0.000002812499,0.933983,0.000007179658,0.00039943794,0.017811572],"study_design_scores_gemma":[0.0004698839,0.00053194637,0.054908097,0.00016096809,0.000026759195,0.000018025608,0.00014922651,0.0000052016007,0.89477354,0.0000021984822,0.048753496,0.00020068085],"about_ca_topic_score_codex":0.000019560306,"about_ca_topic_score_gemma":0.0000027398132,"teacher_disagreement_score":0.04835406,"about_ca_system_score_codex":0.00006464068,"about_ca_system_score_gemma":0.00004500847,"threshold_uncertainty_score":0.65369844},"labels":[],"label_agreement":null},{"id":"W2138316904","doi":"10.1128/aac.48.9.3343-3348.2004","title":"Novel Murine Model of Pneumococcal Pneumonia: Use of Temperature as a Measure of Disease Severity To Compare the Efficacies of Moxifloxacin and Levofloxacin","year":2004,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; McMaster University; University of Toronto; Hamilton Health Sciences; Occupational Cancer Research Centre","funders":"Bayer","keywords":"Levofloxacin; Moxifloxacin; Medicine; Pneumococcal pneumonia; Pneumonia; Streptococcus pneumoniae; Drug; Internal medicine; Disease; Efficacy; Antibiotics; Pharmacology; Biology; Microbiology","score_opus":0.03014470455735367,"score_gpt":0.2680718816000257,"score_spread":0.23792717704267202,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138316904","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953962,0.000025107218,0.00012996767,0.0036372617,0.00003147015,0.0004923862,0.0002570326,0.000010627578,0.000019925687],"genre_scores_gemma":[0.99784875,0.0002205596,0.00021442126,0.0016019355,0.00002149965,0.0000042256283,0.000007905755,0.000019098057,0.000061618215],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99904656,0.000021946038,0.00038084207,0.0002129392,0.00018735789,0.00015037869],"domain_scores_gemma":[0.9992005,0.000025910642,0.00015988851,0.0002767168,0.00020088955,0.00013608071],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008495967,0.0001894631,0.0005121451,0.00009322522,0.00007048198,0.000007414488,0.00008192285,0.00007019887,0.000008313347],"category_scores_gemma":[0.000030418088,0.00012752002,0.00013236351,0.00020516521,0.00030032112,0.000062881954,0.000045561403,0.0001372458,2.894401e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005289368,0.00080824055,0.03267242,0.0003404174,0.00013832287,0.0000019173033,0.0010463654,0.0016103596,0.9625229,0.000068008,0.000103847655,0.0001582294],"study_design_scores_gemma":[0.0036233899,0.00033075226,0.6123392,0.0005786953,0.00017913514,0.000030391626,0.000099659635,0.0002798005,0.38177606,0.000034019533,0.00054865907,0.0001802176],"about_ca_topic_score_codex":0.00016234422,"about_ca_topic_score_gemma":0.000030127678,"teacher_disagreement_score":0.5807469,"about_ca_system_score_codex":0.000013474363,"about_ca_system_score_gemma":0.00011749009,"threshold_uncertainty_score":0.52001154},"labels":[],"label_agreement":null},{"id":"W2138328847","doi":"10.1016/s1098-3015(10)73104-1","title":"VA2 COST EFFECTIVENESS ANALYSIS OF THE NEW 10-VALENT PNEUMOCOCCAL NON-TYPEABLE HAEMOPHILUS INFLUENZAE PROTEIN-D CONJUGATE VACCINE (PHID-CV) IN CANADA","year":2009,"lang":"en","type":"article","venue":"Value in Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Conjugate vaccine; Haemophilus influenzae; Pneumococcal conjugate vaccine; Medicine; Conjugate; Virology; Haemophilus; Pneumococcal disease; Microbiology; Streptococcus pneumoniae; Biology; Immunization; Immunology; Genetics; Antigen; Bacteria; Mathematics","score_opus":0.024455562045806914,"score_gpt":0.29797455336864515,"score_spread":0.27351899132283825,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138328847","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9911729,0.00024669652,0.000027701011,0.0058457917,0.00016273477,0.0021941909,0.000021208974,0.000017070613,0.00031172365],"genre_scores_gemma":[0.9980396,0.000043758562,0.00001963645,0.0016466979,0.000059854414,0.000048023543,0.00000804932,0.000015350068,0.00011900701],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9974315,0.00059604464,0.00078789954,0.00034087096,0.00035684684,0.00048679236],"domain_scores_gemma":[0.99859345,0.00022498083,0.00026439174,0.0005315545,0.00009391643,0.0002917355],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009745193,0.00021539751,0.00085807283,0.0004741418,0.00010189234,0.00000775929,0.00016332477,0.000110892004,0.00005010437],"category_scores_gemma":[0.00025908276,0.0001584039,0.00015321156,0.0026363651,0.000027102124,0.00005677589,0.000036197416,0.00050840125,0.000005405203],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043622643,0.00055600127,0.7693389,0.0006895476,0.0003014163,0.00008856608,0.0003663649,0.18934597,0.034777883,0.0001898251,0.000336985,0.0035722968],"study_design_scores_gemma":[0.0022876568,0.0004398453,0.9851816,0.0007177702,0.00013818336,0.000014310009,0.000035557136,0.005919219,0.0026955067,0.00011074556,0.0023177636,0.00014178322],"about_ca_topic_score_codex":0.83036786,"about_ca_topic_score_gemma":0.568315,"teacher_disagreement_score":0.26205286,"about_ca_system_score_codex":0.001954109,"about_ca_system_score_gemma":0.0060733873,"threshold_uncertainty_score":0.99956125},"labels":[],"label_agreement":null},{"id":"W2138398758","doi":"10.1086/315811","title":"Modulation of Cytokines and Chemokines, Limited Pulmonary Vascular Bed Permeability, and Prevention of Septicemia and Death with Ceftriaxone and Interleukin‐10 in Pneumococcal Pneumonia","year":2000,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval","funders":"","keywords":"Bronchoalveolar lavage; Pneumococcal pneumonia; Immunology; Pneumonia; Ceftriaxone; Medicine; Cytokine; Chemokine; Streptococcus pneumoniae; Inflammation; Antibiotics; Lung; Internal medicine; Microbiology; Biology","score_opus":0.009363782102383571,"score_gpt":0.24728984883110608,"score_spread":0.23792606672872252,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138398758","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983053,0.0011144709,0.0000139541935,0.00014104362,0.000016479053,0.00029890743,0.0000069416033,0.0000094934585,0.0000933722],"genre_scores_gemma":[0.99818426,0.0017007197,0.000010298567,0.00002145187,0.000045355056,0.0000044421195,0.000002542188,0.000012072625,0.000018864432],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990334,0.00014800338,0.00042056537,0.00012238504,0.0001712663,0.000104392],"domain_scores_gemma":[0.99920714,0.00014972777,0.00024736597,0.00012651947,0.0001536085,0.00011565752],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028239095,0.00014220008,0.00039633884,0.00020494763,0.00006597775,0.000012816406,0.000030454436,0.00006529487,0.000023675455],"category_scores_gemma":[0.000100461504,0.000089427835,0.00005922747,0.00018837808,0.00022779,0.00017978315,0.000026904287,0.00015582843,1.1054891e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007119887,0.00038862944,0.8486666,0.00032380954,0.00014975303,0.000013909942,0.0002576669,0.0001246955,0.14202017,0.000006217722,0.0000010870331,0.0073354444],"study_design_scores_gemma":[0.0022590035,0.0014950789,0.9920811,0.00045591913,0.0006654509,0.0011933208,0.00013795662,0.00056480675,0.000714443,0.0003170554,0.000031132015,0.00008471505],"about_ca_topic_score_codex":0.00004490565,"about_ca_topic_score_gemma":0.000033820157,"teacher_disagreement_score":0.14341448,"about_ca_system_score_codex":0.000037893387,"about_ca_system_score_gemma":0.00006311648,"threshold_uncertainty_score":0.36467615},"labels":[],"label_agreement":null},{"id":"W2138403554","doi":"","title":"Treatment and outcomes of community-acquired pneumonia at Canadian hospitals.","year":2000,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Robarts Clinical Trials","funders":"","keywords":"Medicine; Interquartile range; Pneumonia; Community-acquired pneumonia; Intensive care unit; Confidence interval; Emergency medicine; Pediatrics; Internal medicine","score_opus":0.020443500183784193,"score_gpt":0.24246526569667687,"score_spread":0.22202176551289268,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138403554","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9800563,0.00009907553,5.302907e-8,0.0035046306,0.000061142506,0.00049218215,0.000031663712,0.000030820163,0.015724175],"genre_scores_gemma":[0.99235356,0.000106810665,0.0000026601892,0.0006722121,0.000018262976,0.00032160082,0.0000106207835,0.0000115662215,0.006502719],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99940926,0.000052399973,0.00014818636,0.00007636592,0.00006297175,0.0002508369],"domain_scores_gemma":[0.9992879,0.000041639407,0.000026691623,0.00026470458,0.000021691187,0.0003573431],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000070616086,0.00010594547,0.00024727779,0.00009990441,0.0002005851,0.000007127143,0.0000389289,0.000060691713,0.0001247211],"category_scores_gemma":[0.000023392426,0.00007872123,0.00006516856,0.000092028175,0.00010406374,0.000033823748,0.000010877531,0.000055811444,0.000018984663],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014724431,0.00013676805,0.84130055,0.000016175485,0.00014067341,0.000021343252,0.000535368,0.0000011400663,0.00049613643,0.000016246559,0.00012804486,0.15719284],"study_design_scores_gemma":[0.00076467916,0.00014127718,0.94646484,0.0000030322988,0.000077258206,0.00007233628,0.00005182573,0.0000013030406,0.00033132397,0.000012087568,0.052014396,0.00006566748],"about_ca_topic_score_codex":0.030556886,"about_ca_topic_score_gemma":0.035554063,"teacher_disagreement_score":0.15712717,"about_ca_system_score_codex":0.00022784692,"about_ca_system_score_gemma":0.00005014658,"threshold_uncertainty_score":0.9820446},"labels":[],"label_agreement":null},{"id":"W2138428209","doi":"10.1183/09031936.00046212","title":"Outcomes in females hospitalised with community-acquired pneumonia are worse than in males","year":2012,"lang":"en","type":"article","venue":"European Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Alberta; University of Louisville; U.S. Department of Veterans Affairs","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Hazard ratio; Epidemiology; Multivariate analysis; Proportional hazards model; Internal medicine; Mortality rate; Demography; Confidence interval","score_opus":0.05596992410967232,"score_gpt":0.29894978251407894,"score_spread":0.2429798584044066,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138428209","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9922515,0.00048643295,0.000009891903,0.00054380053,0.00030323502,0.00026902682,0.0000062203862,0.00007490424,0.0060549993],"genre_scores_gemma":[0.9973467,0.000029066965,0.00005213887,0.0018630368,0.0003399932,0.000010005411,0.0000027829044,0.00008779304,0.00026847256],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9961741,0.0018804421,0.00069387833,0.00018733127,0.00038405065,0.0006802246],"domain_scores_gemma":[0.9984128,0.00011716705,0.00034189236,0.0005317767,0.0001020137,0.00049437344],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0020271032,0.00034271186,0.00056280306,0.0006945592,0.00038446017,0.00007602321,0.00027534462,0.00008631181,0.00006669263],"category_scores_gemma":[0.00019461197,0.0002472024,0.000158469,0.0005026754,0.0002192238,0.00045799272,0.000094867384,0.0013420044,0.00015382191],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010997263,0.0008813238,0.98528194,0.000045941008,0.000058280893,0.001361005,0.001458792,0.00003075252,0.010236796,0.000017975826,0.000034167697,0.00048307446],"study_design_scores_gemma":[0.0026702755,0.0005370691,0.98320216,0.000605119,0.000039886025,0.0006909924,0.00216372,0.0000016495178,0.0002221033,0.000004898354,0.009568222,0.00029391708],"about_ca_topic_score_codex":0.000015091945,"about_ca_topic_score_gemma":0.00022073642,"teacher_disagreement_score":0.010014693,"about_ca_system_score_codex":0.00019303977,"about_ca_system_score_gemma":0.00012026069,"threshold_uncertainty_score":0.99999803},"labels":[],"label_agreement":null},{"id":"W2138573008","doi":"10.1086/376642","title":"Emergence of Levofloxacin-Resistant Pneumococci in Immunocompromised Adults after Therapy for Community-Acquired Pneumonia","year":2003,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":99,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; University of Toronto","funders":"","keywords":"Levofloxacin; Medicine; Streptococcus pneumoniae; Pneumonia; Quinolone; Community-acquired pneumonia; Pneumococcal pneumonia; Bacteremia; Sputum; Internal medicine; Immunology; Antibiotics; Microbiology; Pathology; Tuberculosis; Biology","score_opus":0.04259078265781822,"score_gpt":0.3616768289448374,"score_spread":0.31908604628701914,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138573008","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99546903,0.0010008855,0.000065732085,0.00015609195,0.00058965955,0.0016472857,0.0000959123,0.00012239821,0.0008530283],"genre_scores_gemma":[0.99747884,0.0006454616,0.000016882299,0.0009050236,0.00009308021,0.00071636646,0.000025317557,0.000046017823,0.00007300071],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99711967,0.0007402995,0.0012051701,0.00036117525,0.00018531625,0.0003883637],"domain_scores_gemma":[0.9974286,0.00097056484,0.00027414208,0.00073596125,0.00029018836,0.0003005242],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00060257287,0.0002890672,0.00082070444,0.00020760024,0.00020910583,0.000016989638,0.00014223986,0.00021230619,0.0002868794],"category_scores_gemma":[0.0014037627,0.0002451913,0.00064750726,0.0004420561,0.00037490006,0.00010209948,0.0000366681,0.00037285543,0.00001814813],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001646598,0.0073696557,0.9370737,0.00034109587,0.0002238134,0.00002531285,0.00019994771,0.000016483846,0.04801674,0.0001585035,0.0001959949,0.0047321683],"study_design_scores_gemma":[0.008412089,0.0032743884,0.9805535,0.00030131778,0.000116921256,0.000006355345,0.00023046599,0.000047778456,0.0012473533,0.00076953066,0.004756405,0.00028390044],"about_ca_topic_score_codex":0.00006321372,"about_ca_topic_score_gemma":0.00014129971,"teacher_disagreement_score":0.046769388,"about_ca_system_score_codex":0.000040104773,"about_ca_system_score_gemma":0.00029904893,"threshold_uncertainty_score":0.9998612},"labels":[],"label_agreement":null},{"id":"W2138755493","doi":"10.1017/s0950268810000774","title":"Alcohol consumption as a risk factor for pneumonia: a systematic review and meta-analysis","year":2010,"lang":"en","type":"review","venue":"Epidemiology and Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":167,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Ontario; University of Toronto; Centre for Addiction and Mental Health","funders":"National Institute on Alcohol Abuse and Alcoholism; National Institutes of Health","keywords":"Meta-analysis; Relative risk; Medicine; Risk factor; Alcohol; Incidence (geometry); Pneumonia; Alcohol consumption; Internal medicine; Confidence interval; Biology","score_opus":0.2213689279291421,"score_gpt":0.45454796378328344,"score_spread":0.23317903585414135,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138755493","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00007172173,0.99313974,0.0007157989,0.00041607325,0.00016543535,0.005102717,0.0002525419,0.00008818975,0.00004779048],"genre_scores_gemma":[0.00009966026,0.9948807,0.000048336824,0.0016563688,0.0000838793,0.0026678322,0.00010104264,0.000032110165,0.00043010723],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99545,0.0019598822,0.001536904,0.00067751,0.000070487724,0.00030521568],"domain_scores_gemma":[0.9944693,0.0031364886,0.0015213522,0.0005104649,0.00013355601,0.00022883851],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0028389369,0.0005350423,0.010574159,0.00052516937,0.00034024217,0.000013050762,0.000046173758,0.0010595697,0.00024196194],"category_scores_gemma":[0.006711073,0.0003186354,0.0030317046,0.0003464922,0.00020242883,0.00008560616,0.00003543164,0.0010276231,0.000070950875],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000033434778,0.000053649634,0.0014128711,0.8625206,0.12746096,0.0000021950702,0.000012064905,2.3461585e-7,0.0000018478482,0.00020677809,0.00007076821,0.008254741],"study_design_scores_gemma":[0.00013163587,0.00022187801,0.0007180853,0.005962107,0.8079098,0.0006899393,5.7408215e-7,0.000008549074,8.5566136e-8,0.00007802455,0.1840529,0.00022646245],"about_ca_topic_score_codex":0.000040569605,"about_ca_topic_score_gemma":0.00006218286,"teacher_disagreement_score":0.85655844,"about_ca_system_score_codex":0.000051975134,"about_ca_system_score_gemma":0.00008342795,"threshold_uncertainty_score":0.99992657},"labels":[],"label_agreement":null},{"id":"W2138817967","doi":"10.1183/09031936.00090311","title":"Moxifloxacin<i>versus</i>amoxicillin/clavulanic acid in outpatient acute exacerbations of COPD: MAESTRAL results","year":2011,"lang":"en","type":"article","venue":"European Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Bayer Canada; Bayer HealthCare","keywords":"Moxifloxacin; Medicine; Amoxicillin; Clavulanic acid; Internal medicine; Exacerbation; COPD; Chronic bronchitis; Amoxicillin/clavulanic acid; Gastroenterology; Antibiotics; Microbiology","score_opus":0.07484813834176199,"score_gpt":0.29089163019605513,"score_spread":0.21604349185429314,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138817967","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9479427,0.00020466102,0.00014454531,0.00013656383,0.0009000173,0.00027817689,0.000047386227,0.00006184467,0.050284125],"genre_scores_gemma":[0.9980262,0.00008958627,0.0003365883,0.00070318993,0.00034656393,0.0000049263986,0.0000071068957,0.00006110482,0.0004247144],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9969896,0.0005693921,0.0012148512,0.00032949584,0.0004463484,0.00045031816],"domain_scores_gemma":[0.99825144,0.000049152004,0.00049593224,0.00051950506,0.00027961636,0.0004043557],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011021161,0.00027692743,0.00042604882,0.0005503669,0.000200036,0.000027755215,0.0002533852,0.000112800786,0.00022855554],"category_scores_gemma":[0.00026242837,0.00023340448,0.00026506485,0.0004725287,0.00018431454,0.00022879263,0.000075031705,0.0009905668,0.0002096094],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008562249,0.004716982,0.28852984,0.0002020314,0.0013868639,0.0099958135,0.013608081,0.0003414212,0.64160734,0.0008706867,0.016131986,0.0140467],"study_design_scores_gemma":[0.01862576,0.006457462,0.85698175,0.0005240042,0.0004560323,0.0008097535,0.0008512301,0.000036124733,0.024338609,0.000047260077,0.09027464,0.00059735856],"about_ca_topic_score_codex":0.0000059816266,"about_ca_topic_score_gemma":0.000022161508,"teacher_disagreement_score":0.61726874,"about_ca_system_score_codex":0.00016260296,"about_ca_system_score_gemma":0.0003024606,"threshold_uncertainty_score":0.9517959},"labels":[],"label_agreement":null},{"id":"W2138840060","doi":"10.1093/jac/dkt332","title":"Evolution and molecular characterization of macrolide-resistant Streptococcus pneumoniae in Canada between 1998 and 2008","year":2013,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Shared Health; Health Sciences Centre; University of Manitoba","funders":"","keywords":"Microbiology; Streptococcus pneumoniae; Serotype; Pilus; Broth microdilution; Virulence; Pulsed-field gel electrophoresis; Biology; Multilocus sequence typing; Multiple drug resistance; Drug resistance; Antibiotics; Minimum inhibitory concentration; Genotype; Gene; Genetics","score_opus":0.004564533711271944,"score_gpt":0.20944940659696645,"score_spread":0.2048848728856945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138840060","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99638265,0.000055812154,0.00009987876,0.0031501502,0.000059303577,0.00022039305,0.000014656977,0.0000027519793,0.000014421817],"genre_scores_gemma":[0.99888843,0.00020294503,0.000041522726,0.00077387464,0.000066988265,0.000001220692,0.0000033260364,0.000012643355,0.000009027231],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991866,0.000031668707,0.00043543946,0.00009063481,0.0001249923,0.00013068247],"domain_scores_gemma":[0.9993783,0.000017532277,0.0002974992,0.00007413824,0.00013733849,0.00009518212],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000872238,0.00010347736,0.0003306014,0.00015523273,0.000028959712,0.000012837372,0.000036791145,0.00006115396,0.000014101075],"category_scores_gemma":[0.000013236251,0.000085652115,0.000044129414,0.00013463714,0.000050959774,0.00011164807,0.0000087789385,0.000159235,4.4432525e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027713191,0.000030742787,0.2280325,0.000040145755,0.00003745423,0.000015274256,0.000047686284,0.0000021099397,0.77065307,0.0000015049047,0.00011057538,0.0010012076],"study_design_scores_gemma":[0.0014028441,0.00017885133,0.8268502,0.00016880747,0.00003132535,0.000113548194,0.00002870696,0.000028403936,0.17020057,0.000013220194,0.00090705196,0.00007651465],"about_ca_topic_score_codex":0.025014697,"about_ca_topic_score_gemma":0.0065905564,"teacher_disagreement_score":0.60045254,"about_ca_system_score_codex":0.00014332928,"about_ca_system_score_gemma":0.0004200942,"threshold_uncertainty_score":0.9814778},"labels":[],"label_agreement":null},{"id":"W2138979898","doi":"10.1177/0956462412472450","title":"Immunization against pneumococcal disease in HIV-infected patients: conjugate versus polysaccharide vaccine before or after reconstitution of the immune system (CTN-147)","year":2013,"lang":"en","type":"article","venue":"International Journal of STD & AIDS","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"HIV Legal Network","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Immunization; Pneumococcal conjugate vaccine; Immune system; Immunology; Pneumococcal polysaccharide vaccine; Serotype; Conjugate vaccine; Vaccination; Virology; Streptococcus pneumoniae; Pneumococcal disease; Antibiotics; Biology; Microbiology","score_opus":0.006969237022593491,"score_gpt":0.24341707433922025,"score_spread":0.23644783731662675,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138979898","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958138,0.000095878335,0.00017688247,0.0010595315,0.002252317,0.00037009013,0.000041324587,0.000016360613,0.00017380384],"genre_scores_gemma":[0.9994278,0.000045798613,0.0000383958,0.00012558866,0.00022911128,0.00002155657,0.000020838825,0.000015169141,0.00007575009],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982418,0.000105537976,0.0009179173,0.00011820712,0.0004682419,0.00014829413],"domain_scores_gemma":[0.9977346,0.00006823664,0.0005772863,0.00019705363,0.001299098,0.00012374039],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001824207,0.00015213112,0.00029857754,0.00039640517,0.000055333632,0.000034552588,0.00023935444,0.000077137214,0.00016057398],"category_scores_gemma":[0.00042086764,0.00009313393,0.0002158783,0.0002993961,0.00007696446,0.00043509286,0.00007447564,0.00031460557,0.000023472803],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025516625,0.0005597057,0.9562138,0.00006829683,0.00038011433,0.00007166853,0.00018679652,0.00039771228,0.035972316,0.00039070335,0.000026225722,0.0031810517],"study_design_scores_gemma":[0.0057322504,0.00054097024,0.9893094,0.0012056555,0.00013543385,0.000064640466,0.00012722019,0.0004049925,0.0019189622,0.000023377084,0.00044079035,0.000096354095],"about_ca_topic_score_codex":0.000059844526,"about_ca_topic_score_gemma":0.000025184814,"teacher_disagreement_score":0.034053355,"about_ca_system_score_codex":0.00042110184,"about_ca_system_score_gemma":0.00031934748,"threshold_uncertainty_score":0.37978914},"labels":[],"label_agreement":null},{"id":"W2139456334","doi":"10.1016/j.tim.2011.06.001","title":"Risk of Red Queen dynamics in pneumococcal vaccine strategy","year":2011,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Biology; Streptococcus pneumoniae; Pneumococcal conjugate vaccine; Pathogen; Evasion (ethics); Serotype; Host (biology); Evolutionary dynamics; Vaccination; Pneumococcal infections; Selection (genetic algorithm); Virology; Microbiology; Ecology; Genetics; Population; Immune system; Antibiotics","score_opus":0.022212978294489108,"score_gpt":0.2823202600761777,"score_spread":0.2601072817816886,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139456334","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98943186,0.0000367186,0.0000102203385,0.00021083519,0.0001226863,0.00008937057,0.000046804995,0.00002349329,0.01002804],"genre_scores_gemma":[0.99927014,0.00006124322,0.00007462666,0.000054301094,0.000022583386,0.000010173305,0.00007187534,0.000012142417,0.00042290014],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989705,0.00013866059,0.00040995708,0.00021546918,0.000018851177,0.00024655362],"domain_scores_gemma":[0.999542,0.000035577712,0.00011139855,0.00023602552,0.00003053957,0.000044482927],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017092939,0.00012764758,0.00038769288,0.0005676579,0.000016265973,9.707117e-7,0.00008440428,0.00023083357,0.0004047522],"category_scores_gemma":[0.00003034692,0.00010490913,0.000077139644,0.00042981908,0.000079194186,0.000024132942,0.00003270725,0.00035689079,0.000014518098],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012164911,0.00034281012,0.727241,0.000014810658,0.00003690324,0.000048113787,0.00013616729,0.000011135105,0.26772484,0.0002658419,0.00007449734,0.003982284],"study_design_scores_gemma":[0.0019037455,0.00066920096,0.9917701,0.00003542911,0.00004358803,0.00013117683,0.00012249628,0.00008677372,0.0042367396,0.00017494328,0.00071469246,0.000111097324],"about_ca_topic_score_codex":0.00066333974,"about_ca_topic_score_gemma":0.004165233,"teacher_disagreement_score":0.26452917,"about_ca_system_score_codex":0.00011768914,"about_ca_system_score_gemma":0.00004270333,"threshold_uncertainty_score":0.4431753},"labels":[],"label_agreement":null},{"id":"W2139547389","doi":"10.1093/cid/ciu366","title":"Outbreak of Invasive Streptococcus pneumoniae Serotype 12F Among a Marginalized Inner-City Population in Winnipeg, Canada, 2009-2011","year":2014,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Calgary Laboratory Services; University of Toronto; University of Manitoba; University of Calgary; Winnipeg Regional Health Authority","funders":"","keywords":"Serotype; Multiple Loci VNTR Analysis; Medicine; Outbreak; Streptococcus pneumoniae; Multilocus sequence typing; Pulsed-field gel electrophoresis; Population; Variable number tandem repeat; Microbiology; Virology; Environmental health; Antibiotics; Biology; Genotype","score_opus":0.02317224312417895,"score_gpt":0.3080211473223313,"score_spread":0.2848489041981524,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139547389","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99662554,0.0000750571,0.00002507194,0.00036838214,0.0005696719,0.0007751998,0.00008610154,0.000111459645,0.0013634944],"genre_scores_gemma":[0.9982276,0.000050094393,0.0000022542142,0.0010144281,0.0002921035,0.00009329008,0.00008159559,0.00003132953,0.00020728882],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99731416,0.00042386827,0.0011049692,0.0004702405,0.0003258767,0.0003609027],"domain_scores_gemma":[0.9975303,0.00076795294,0.00043202768,0.0005270188,0.00026359828,0.0004791293],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003635115,0.00027163842,0.000853092,0.00022727395,0.000114509705,0.000017599405,0.00011416696,0.00024173643,0.0002764626],"category_scores_gemma":[0.0024820014,0.00023946873,0.00029529195,0.0003835634,0.00025488337,0.00013722357,0.00007271935,0.00044317127,0.000025054967],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000050641265,0.000902449,0.9954136,0.0001328513,0.00009629061,0.000033594722,0.000018640434,0.000100823694,0.0002606469,0.00005543199,0.0010634115,0.0018716267],"study_design_scores_gemma":[0.0024182764,0.0006459454,0.9937326,0.00020642501,0.00024046299,0.000004824942,0.000026562735,0.0001550434,0.00005204208,0.0004012435,0.0018806484,0.00023597514],"about_ca_topic_score_codex":0.123108916,"about_ca_topic_score_gemma":0.5027718,"teacher_disagreement_score":0.37966287,"about_ca_system_score_codex":0.00020867067,"about_ca_system_score_gemma":0.00081318227,"threshold_uncertainty_score":0.9765252},"labels":[],"label_agreement":null},{"id":"W2140022362","doi":"10.1093/jac/dkf146","title":"Genotypic characterization of macrolide-resistant strains of Streptococcus pneumoniae isolated in Quebec, Canada, and in vitro activity of ABT-773 and telithromycin","year":2002,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hôpital Maisonneuve-Rosemont","funders":"","keywords":"Telithromycin; Streptococcus pneumoniae; Ketolide; Microbiology; Genotype; Biology; Streptococcaceae; Antibacterial agent; Antibiotics; Virology; Gene; Genetics","score_opus":0.007604654747362634,"score_gpt":0.2195909708303114,"score_spread":0.21198631608294877,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140022362","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99833226,0.000053274773,0.000023134102,0.0012680046,0.000047906116,0.00021044501,0.000049010665,0.000002119397,0.000013872686],"genre_scores_gemma":[0.9991754,0.00055260543,0.000028182993,0.0001631257,0.000027088363,5.6218755e-7,0.0000018861416,0.000013833714,0.00003729855],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998887,0.00005794598,0.00065918075,0.00011192434,0.00013981639,0.00014413797],"domain_scores_gemma":[0.99905974,0.000029986766,0.0006081556,0.00010318038,0.00013226023,0.00006667726],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014208718,0.00013073304,0.0005903176,0.00028517997,0.000018362742,0.000006042898,0.000050098875,0.00010296335,0.000030485147],"category_scores_gemma":[0.000019741938,0.00011296906,0.000062537365,0.00025237253,0.00010928614,0.00011041964,0.000009363629,0.00022121095,4.3929067e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052448263,0.00034835457,0.040011276,0.00017522908,0.00006649389,0.00002762815,0.0004945443,0.000008010201,0.9550421,6.509414e-7,0.00002027274,0.003280941],"study_design_scores_gemma":[0.001880543,0.00016652126,0.48212293,0.00020329635,0.000019894276,0.000034455825,0.000022554004,0.00008201189,0.5153145,0.0000011412923,0.000094624455,0.00005753285],"about_ca_topic_score_codex":0.033175875,"about_ca_topic_score_gemma":0.12752888,"teacher_disagreement_score":0.44211164,"about_ca_system_score_codex":0.00009511166,"about_ca_system_score_gemma":0.0002470962,"threshold_uncertainty_score":0.9732623},"labels":[],"label_agreement":null},{"id":"W2140411972","doi":"10.1503/cmaj.080358","title":"Respiratory fluoroquinolones for the treatment of community-acquired pneumonia: a meta-analysis of randomized controlled trials","year":2008,"lang":"en","type":"review","venue":"Canadian Medical Association Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":102,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Levofloxacin; Internal medicine; Pneumonia; Moxifloxacin; Population; Randomized controlled trial; Community-acquired pneumonia; Adverse effect; Meta-analysis; Antibiotics; Intensive care medicine","score_opus":0.17762819466279042,"score_gpt":0.3996730399730647,"score_spread":0.22204484531027427,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140411972","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000086450855,0.9905805,0.00006361431,0.0037321572,0.0005392361,0.00430902,0.00053974986,0.0000108306795,0.00013842239],"genre_scores_gemma":[0.00014514374,0.99607384,0.0000110781875,0.0013144284,0.00067039893,0.0013129055,0.00006259072,0.000035141493,0.00037445212],"study_design_codex":"meta_analysis","study_design_gemma":"not_applicable","domain_scores_codex":[0.9805615,0.0120406905,0.005397998,0.00016343016,0.0014189089,0.0004175033],"domain_scores_gemma":[0.9553834,0.035672173,0.006245707,0.00049068703,0.0013454433,0.00086258596],"candidate_categories":["metaresearch","metaepi_broad","insufficient_payload"],"consensus_categories":["metaepi_broad"],"category_scores_codex":[0.020137196,0.00047842454,0.030905535,0.0016989761,0.00064551836,0.000032840228,0.00033805633,0.0010602438,0.0010939747],"category_scores_gemma":[0.031526446,0.00021330807,0.032420944,0.0009891815,0.00031897472,0.000036688256,0.000010138422,0.00079741864,0.0000052439186],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013599875,0.0003313415,0.000019038549,0.0004226944,0.8859279,0.00004348528,0.0004292478,0.0000043828695,0.0000018583802,0.000040959174,0.0027600145,0.10865908],"study_design_scores_gemma":[0.03749109,0.00024061395,0.0000120467375,0.00015182457,0.44180328,0.00007625636,0.000054908738,0.00001281059,4.4103052e-7,0.0000046936575,0.5200707,0.000081366394],"about_ca_topic_score_codex":0.0013406661,"about_ca_topic_score_gemma":0.005651423,"teacher_disagreement_score":0.5173107,"about_ca_system_score_codex":0.0011282611,"about_ca_system_score_gemma":0.008882841,"threshold_uncertainty_score":0.99981916},"labels":[],"label_agreement":null},{"id":"W2140921029","doi":"10.1586/14787210.3.2.263","title":"Epidemiology of community- and nursing home-acquired pneumonia in older adults","year":2005,"lang":"en","type":"review","venue":"Expert Review of Anti-infective Therapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Comorbidity; Pneumonia; Epidemiology; Immunosuppression; Asthma; Pneumococcal pneumonia; Disease; Vaccination; Intensive care medicine; Pediatrics; Internal medicine; Immunology; Streptococcus pneumoniae","score_opus":0.0683824768754011,"score_gpt":0.4346097030068631,"score_spread":0.36622722613146197,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140921029","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0050634993,0.99125683,0.000019403027,0.0003478282,0.00024278683,0.0027009263,0.000024520865,0.000039040766,0.00030513734],"genre_scores_gemma":[0.0018055948,0.99610686,0.00007093927,0.0014684324,0.00019186224,0.0002068964,0.000060442017,0.00007905786,0.00000992062],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99407816,0.003038937,0.0019022286,0.00039641323,0.00017945284,0.00040482223],"domain_scores_gemma":[0.99630576,0.0012327719,0.0012086154,0.0008714472,0.00023189977,0.00014952832],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0016288392,0.0006600928,0.0065345755,0.0005489985,0.00010812069,0.0000020359014,0.00022524656,0.0004631736,0.00009393994],"category_scores_gemma":[0.0003948957,0.00046270233,0.0009738728,0.00073110405,0.0006769596,0.00009459144,0.000056086967,0.00081537274,0.000008344957],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020677855,0.001118154,0.0020532687,0.04800458,0.00029266538,0.0000055847954,0.0008326829,5.327215e-8,0.000086668246,0.000044420194,0.00012722726,0.94741404],"study_design_scores_gemma":[0.0014844101,0.0009124497,0.03025737,0.4423817,0.00034242633,0.0003664113,0.00008431844,8.8596113e-7,0.000022220573,0.000022752598,0.52368665,0.00043838358],"about_ca_topic_score_codex":0.00012046569,"about_ca_topic_score_gemma":0.000006669642,"teacher_disagreement_score":0.94697565,"about_ca_system_score_codex":0.00019871663,"about_ca_system_score_gemma":0.00030128343,"threshold_uncertainty_score":0.99978244},"labels":[],"label_agreement":null},{"id":"W2140990234","doi":"10.1136/ebm1077","title":"The 23-valent polysaccharide vaccine prevents pneumococcal pneumonia and reduces associated mortality in nursing home residents in Japan","year":2010,"lang":"en","type":"letter","venue":"Evidence-Based Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Pneumococcal pneumonia; Pneumonia; Medicine; Placebo; Pneumococcal polysaccharide vaccine; Nursing homes; Pneumococcal vaccine; Intensive care medicine; Internal medicine; Streptococcus pneumoniae; Nursing; Pneumococcal disease; Microbiology; Alternative medicine; Biology","score_opus":0.038251875562922144,"score_gpt":0.34343851439299644,"score_spread":0.3051866388300743,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140990234","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5850524,0.002524889,0.0000014144738,0.4097151,0.0013118965,0.0012181917,0.0000145115455,0.0000755804,0.00008607185],"genre_scores_gemma":[0.8900938,0.0026862142,0.000007772193,0.10217463,0.0034250093,0.00030272568,0.00013308572,0.00012561306,0.0010511186],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99334264,0.0008932798,0.0017912588,0.0011867478,0.0015752652,0.0012108071],"domain_scores_gemma":[0.995442,0.002012021,0.00079809816,0.0011259483,0.00023685208,0.00038512383],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0029178264,0.00084590894,0.00168453,0.0011271546,0.00036781517,0.00007647441,0.0005367862,0.0019060478,0.00008129918],"category_scores_gemma":[0.0037837133,0.00057397236,0.0002340021,0.0011591834,0.00071298453,0.00028215602,0.000093610724,0.008116487,0.000020898813],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003241065,0.0005032065,0.74328566,0.0006915532,0.00022727335,0.0018854853,0.00056515273,0.000008677424,0.2000325,0.0000061733267,0.047722224,0.0047479845],"study_design_scores_gemma":[0.0034616753,0.00085539947,0.9576901,0.0291546,0.0005965425,0.0001272988,0.0000911524,0.000096516495,0.0006956661,0.0002488505,0.006467679,0.00051448535],"about_ca_topic_score_codex":0.0014298974,"about_ca_topic_score_gemma":0.00096211187,"teacher_disagreement_score":0.30754045,"about_ca_system_score_codex":0.00095023523,"about_ca_system_score_gemma":0.0009374352,"threshold_uncertainty_score":0.99967116},"labels":[{"model":"gemma","categories":[],"domain":null,"study_design":"observational","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"low"},{"model":"gpt","categories":[],"domain":null,"study_design":"randomized_trial","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"high"}],"label_agreement":"split"},{"id":"W2141135082","doi":"10.1128/aac.45.2.433-438.2001","title":"Mutant Prevention Concentrations of Fluoroquinolones for Clinical Isolates of <i>Streptococcus pneumoniae</i>","year":2001,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":314,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Royal University Hospital","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Bayer","keywords":"Gatifloxacin; Moxifloxacin; Streptococcus pneumoniae; Levofloxacin; Trovafloxacin; Microbiology; Sparfloxacin; Mutant; Minimum inhibitory concentration; Medicine; Antibiotics; Pharmacology; Ciprofloxacin; Biology; Ofloxacin","score_opus":0.04553598527869962,"score_gpt":0.35835780988177,"score_spread":0.3128218246030704,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141135082","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99604684,0.000031618845,0.00046171292,0.0025593722,0.00013213172,0.00058542116,0.000029947474,0.000018993846,0.00013395889],"genre_scores_gemma":[0.99426365,0.0037096397,0.000106774605,0.0015698357,0.000092568436,0.000011861077,0.00001834375,0.000013721041,0.00021361855],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99917775,0.000022070528,0.00044598166,0.00016754825,0.0000515642,0.00013507163],"domain_scores_gemma":[0.9994729,0.000039024108,0.00018506902,0.00013381867,0.00011303106,0.000056138215],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009549843,0.00010223478,0.000314418,0.00004327421,0.00006531068,0.000006426597,0.000040782044,0.00010321478,0.000054250817],"category_scores_gemma":[0.000014836435,0.00008392032,0.00018396793,0.00009454659,0.00015649383,0.00004808954,0.000009253585,0.00006286223,0.0000012099232],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013243007,0.0007030856,0.41672298,0.000087719454,0.00016488161,0.0000016048623,0.0001288332,0.00000129705,0.57077116,0.00006301622,0.0021489116,0.009074108],"study_design_scores_gemma":[0.009290735,0.0026844924,0.45967528,0.00043398127,0.0003545845,0.000106998574,0.00012052977,0.00020673692,0.32056704,0.00018934355,0.20607299,0.00029730418],"about_ca_topic_score_codex":0.0000070611013,"about_ca_topic_score_gemma":0.0000044487547,"teacher_disagreement_score":0.2502041,"about_ca_system_score_codex":0.0000062678673,"about_ca_system_score_gemma":0.000054150823,"threshold_uncertainty_score":0.34221712},"labels":[],"label_agreement":null},{"id":"W2141317210","doi":"10.1177/0009922813488651","title":"Canadian Pediatricians’ Prescribing Practices for Community-Acquired Pneumonia","year":2013,"lang":"en","type":"article","venue":"Clinical Pediatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Family medicine; Pediatrics; Medical emergency; Intensive care medicine; Internal medicine","score_opus":0.12658861476336036,"score_gpt":0.39990245101776356,"score_spread":0.2733138362544032,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141317210","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97566885,0.00028386308,0.0001996126,0.012905704,0.0019601472,0.0016910472,0.000059237842,0.00019189072,0.0070396233],"genre_scores_gemma":[0.985063,0.0005033925,0.0007668751,0.0073325806,0.003931457,0.00021422087,0.00006514205,0.000060523467,0.0020627824],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99768096,0.0003298269,0.00085843477,0.0003138741,0.00022424255,0.0005926396],"domain_scores_gemma":[0.9944876,0.0028141318,0.0005191463,0.0006324944,0.0005248938,0.0010217717],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.001293154,0.00021784322,0.0004619565,0.0003037001,0.0007000266,0.00010227683,0.00025558067,0.0004287557,0.00013532983],"category_scores_gemma":[0.009483705,0.00019272338,0.00034076758,0.0004921513,0.00011118383,0.00029874282,0.00006691271,0.0008414331,0.0004805334],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003270333,0.0006473072,0.93148315,0.00025834225,0.00006805083,0.000020026275,0.00017814421,0.000007690142,0.00050761545,0.000088724315,0.057171784,0.009536482],"study_design_scores_gemma":[0.0023669393,0.0017351618,0.58426124,0.00002617485,0.0009880486,0.000057607227,0.0006820172,0.00056022336,0.000015079589,0.0006607375,0.40813574,0.00051101303],"about_ca_topic_score_codex":0.033832766,"about_ca_topic_score_gemma":0.014378328,"teacher_disagreement_score":0.35096398,"about_ca_system_score_codex":0.00016387139,"about_ca_system_score_gemma":0.001141748,"threshold_uncertainty_score":0.9988598},"labels":[],"label_agreement":null},{"id":"W2141838105","doi":"10.1093/cid/ciu900","title":"Reply to Freyne et al","year":2014,"lang":"fr","type":"letter","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sunnybrook Hospital; University of Toronto; Institute for Clinical Evaluative Sciences; Sunnybrook Health Science Centre","funders":"","keywords":"Medicine","score_opus":0.05314190865490485,"score_gpt":0.4019684675446707,"score_spread":0.3488265588897658,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141838105","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.025990272,0.0011602377,0.0011595067,0.9281586,0.023853416,0.0016792548,0.00047010364,0.00090985646,0.016618755],"genre_scores_gemma":[0.035606794,0.0009753161,0.000010367832,0.9338795,0.020931905,0.00032157387,0.0003876631,0.00022379468,0.007663118],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9918883,0.0019386191,0.002256717,0.0018219185,0.00073718495,0.0013572597],"domain_scores_gemma":[0.9899819,0.0046585817,0.0006057839,0.0019752183,0.00051830657,0.0022602365],"candidate_categories":["metaresearch","metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0011960457,0.0010104974,0.002200855,0.00046194164,0.0004716379,0.00019451782,0.0004127003,0.0012466126,0.002742538],"category_scores_gemma":[0.009714209,0.00091137935,0.0020546603,0.0006643367,0.00093839044,0.00015626827,0.00032478082,0.004149849,0.017110482],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027382563,0.001425181,0.29791105,0.0002700783,0.0005973945,0.0006963768,0.000018516492,0.00005835008,0.000041853295,0.00017599265,0.69422495,0.0045528654],"study_design_scores_gemma":[0.001735885,0.0031084255,0.19087318,0.0010815425,0.0016082589,0.00011375899,0.000007427709,0.00004130412,0.000003914052,0.00030422647,0.8003153,0.0008067651],"about_ca_topic_score_codex":0.00015569972,"about_ca_topic_score_gemma":0.000046791985,"teacher_disagreement_score":0.10703789,"about_ca_system_score_codex":0.0003653956,"about_ca_system_score_gemma":0.0010682085,"threshold_uncertainty_score":0.9993337},"labels":[],"label_agreement":null},{"id":"W2141992911","doi":"10.1128/jcm.42.10.4686-4696.2004","title":"Accuracy of Phenotypic and Genotypic Testing for Identification of <i>Streptococcus pneumoniae</i> and Description of <i>Streptococcus pseudopneumoniae</i> sp. nov","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":253,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen Elizabeth II Health Sciences Centre","funders":"","keywords":"Streptococcus pneumoniae; Streptococcus oralis; Microbiology; Streptococcus mitis; Biology; Pneumolysin; Streptococcaceae; Streptococcus; Viridans streptococci; Genotype; Polymerase chain reaction; Bacteria; Genetics; Gene; Antibiotics","score_opus":0.059630440756577203,"score_gpt":0.3536214053946956,"score_spread":0.2939909646381184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141992911","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963351,0.00063987274,0.0012258224,0.00066647347,0.00042699787,0.0006030518,0.00006155144,0.000009064778,0.000032081574],"genre_scores_gemma":[0.9979839,0.00034152507,0.0012631104,0.00016143055,0.00019865436,0.000009376983,0.000006817358,0.000018689707,0.000016548898],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99641854,0.00013424487,0.0028875906,0.00026252665,0.00008399104,0.00021308154],"domain_scores_gemma":[0.9942967,0.0011652791,0.0031897568,0.00025208294,0.0009502227,0.0001459017],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012825927,0.0001852417,0.001110047,0.00021464008,0.000062497995,0.000008178663,0.00012936979,0.00031373976,0.000005034982],"category_scores_gemma":[0.0029787507,0.00014663137,0.00030303895,0.0002238563,0.0006076966,0.00013974626,0.00005529279,0.00039128124,0.0000010123207],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020475822,0.00037560583,0.2604391,0.000285246,0.00013256144,0.0000028715992,0.00007106318,0.000036726822,0.7317577,0.00008021755,0.000021058986,0.006593104],"study_design_scores_gemma":[0.010159045,0.007225402,0.7500555,0.0009739813,0.001102125,0.0011795193,0.00020927668,0.000040695155,0.22460479,0.0020783558,0.002089433,0.0002818645],"about_ca_topic_score_codex":0.000010639672,"about_ca_topic_score_gemma":0.000009223965,"teacher_disagreement_score":0.50715286,"about_ca_system_score_codex":0.000028989336,"about_ca_system_score_gemma":0.0003642285,"threshold_uncertainty_score":0.5979454},"labels":[],"label_agreement":null},{"id":"W2142021039","doi":"10.1086/379723","title":"Increased Long-Term Mortality after an Episode of Community-Acquired Pneumonia--Time to Move beyond Descriptive Studies","year":2003,"lang":"en","type":"letter","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Pneumonia; Term (time); Community-acquired pneumonia; Intensive care medicine; Descriptive research; Pediatrics; Gerontology; Demography; Internal medicine; Statistics","score_opus":0.0851851512649851,"score_gpt":0.3982544859911127,"score_spread":0.3130693347261276,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142021039","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97710466,0.00071927736,0.000019554485,0.01705737,0.0011770794,0.0017028428,0.0011560582,0.00037134072,0.0006917846],"genre_scores_gemma":[0.5118109,0.000200182,0.0000066193325,0.48363698,0.0020077608,0.00061575085,0.0006717116,0.00017295555,0.0008771183],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9924048,0.003372417,0.0019678266,0.0008403295,0.00065180426,0.0007628332],"domain_scores_gemma":[0.99328655,0.0018631833,0.00072804786,0.002161359,0.0010125616,0.0009482755],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.000818782,0.0009213755,0.0028191824,0.00048090005,0.0004276651,0.00006834086,0.00037033984,0.0012444076,0.0006429212],"category_scores_gemma":[0.0032690817,0.0008001251,0.0013455261,0.00056796946,0.0015751758,0.0002387066,0.00030474548,0.0025019855,0.00040636645],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016370858,0.0045553413,0.843393,0.0011687593,0.0033971707,0.0010387,0.00024031186,0.0000049693554,0.00036329965,0.0000017202394,0.14434353,0.0013294595],"study_design_scores_gemma":[0.0018150535,0.003267623,0.9702459,0.00060750917,0.0044696187,0.000053760785,0.00008080786,0.0000030729968,0.00005847576,0.00032593246,0.01825915,0.0008130992],"about_ca_topic_score_codex":0.00020165958,"about_ca_topic_score_gemma":0.00017661549,"teacher_disagreement_score":0.46657962,"about_ca_system_score_codex":0.00036562193,"about_ca_system_score_gemma":0.0005021593,"threshold_uncertainty_score":0.9997993},"labels":[],"label_agreement":null},{"id":"W2142230428","doi":"10.1086/380488","title":"Update of Practice Guidelines for the Management of Community-Acquired Pneumonia in Immunocompetent Adults","year":2003,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1015,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Community-acquired pneumonia; Pneumonia; Empiric therapy; Intensive care medicine; MEDLINE; Family medicine; Alternative medicine; Pathology; Internal medicine","score_opus":0.0909535052186221,"score_gpt":0.4406345911000759,"score_spread":0.3496810858814538,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142230428","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9910025,0.0013598931,0.0005125594,0.0032599315,0.00067911495,0.0015454127,0.000052663087,0.00006273494,0.001525183],"genre_scores_gemma":[0.99452156,0.001986826,0.00015837653,0.0030069437,0.000057589372,0.0001899911,0.000014032308,0.000020049925,0.000044639724],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99779516,0.00047674307,0.0012093942,0.00015310236,0.00017540395,0.00019020728],"domain_scores_gemma":[0.9960803,0.001878171,0.0004107758,0.0006428848,0.00088135584,0.00010655622],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011622512,0.00015010637,0.0004755545,0.000089160276,0.00015865527,0.000008741207,0.00013972822,0.00008477963,0.000028579803],"category_scores_gemma":[0.0038823371,0.000102767786,0.0003819891,0.0003127163,0.00029587618,0.000077853285,0.00006560408,0.00021264036,0.000007275085],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019235557,0.032490898,0.8309808,0.003978554,0.005621068,0.000078677185,0.0006249048,0.0014922774,0.0025739768,0.016004479,0.0054809977,0.09874982],"study_design_scores_gemma":[0.0072832773,0.0018639525,0.88999885,0.0007077411,0.0016643915,0.00002634399,0.0022605867,0.0001525542,0.00021323755,0.00090161536,0.094723,0.00020446333],"about_ca_topic_score_codex":0.000056767243,"about_ca_topic_score_gemma":0.000027598784,"teacher_disagreement_score":0.09854535,"about_ca_system_score_codex":0.0000337397,"about_ca_system_score_gemma":0.00011279794,"threshold_uncertainty_score":0.46478006},"labels":[],"label_agreement":null},{"id":"W2142294159","doi":"10.1136/postgradmedj-2014-132802","title":"Short-term mortality of adult inpatients with community-acquired pneumonia: external validation of a modified CURB-65 score","year":2015,"lang":"en","type":"article","venue":"Postgraduate Medical Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"AGE-WELL","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Intensive care medicine; Term (time); Emergency medicine; Internal medicine","score_opus":0.0931725764972016,"score_gpt":0.341104664762474,"score_spread":0.24793208826527235,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142294159","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99614006,0.000041076062,0.0018612046,0.00076130714,0.00035380543,0.00026248794,0.000022083215,0.000029220802,0.000528761],"genre_scores_gemma":[0.9993057,0.0000678304,0.000104072154,0.00025682928,0.00017640373,0.000009232004,0.000033799195,0.000025473517,0.000020627067],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99627966,0.0004871812,0.0009414259,0.00015260838,0.0018339247,0.00030521813],"domain_scores_gemma":[0.9969124,0.00008950182,0.00044425225,0.00039185575,0.0012461522,0.0009158349],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010136388,0.00022036622,0.0006069225,0.00024069846,0.00016604993,0.000021236216,0.00027636066,0.00017121235,0.0000338748],"category_scores_gemma":[0.00066929526,0.00015003979,0.00017253202,0.00031940656,0.00047663998,0.00018811057,0.00008520154,0.0009273526,0.0000050178605],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054267887,0.0016293628,0.9586991,0.0002211782,0.0003368821,0.00028323062,0.0014901536,0.00005300781,0.030626353,0.00005516734,0.00006400017,0.0059988527],"study_design_scores_gemma":[0.0065391357,0.0039552776,0.95471,0.002839489,0.00064356346,0.0043803146,0.0005306639,0.00075384096,0.024729116,0.00058732,0.00003799702,0.00029324883],"about_ca_topic_score_codex":0.00014916352,"about_ca_topic_score_gemma":0.00003310322,"teacher_disagreement_score":0.005996457,"about_ca_system_score_codex":0.000103414546,"about_ca_system_score_gemma":0.000643972,"threshold_uncertainty_score":0.6118445},"labels":[],"label_agreement":null},{"id":"W2143225304","doi":"10.3201/eid1805.110235","title":"Epidemic of Invasive Pneumococcal Disease, Western Canada, 2005–2009","year":2012,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia; BC Centre for Disease Control; Saskatchewan Disease Control Laboratory; University of Alberta; Dalhousie University; Provincial Laboratory of Public Health","funders":"Imperial College London; University of Alberta; Wellcome Trust","keywords":"Serotype; Multilocus sequence typing; Outbreak; Pneumococcal disease; Typing; Pneumococcal infections; Disease surveillance; Medicine; Virology; Disease; Molecular epidemiology; Genotype; Biology; Streptococcus pneumoniae; Microbiology; Internal medicine; Genetics; Gene","score_opus":0.01212911124715534,"score_gpt":0.2678431188474944,"score_spread":0.2557140076003391,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143225304","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993999,0.0018823346,0.00005925355,0.0009500043,0.0009256217,0.00035893198,0.00014929668,0.00016437435,0.0015111854],"genre_scores_gemma":[0.9972894,0.00014601761,0.0000021664343,0.001280887,0.00060816016,0.000064047235,0.000042922376,0.000037979993,0.00052839733],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983474,0.00010318616,0.00040463047,0.00023113306,0.00032902227,0.00058462605],"domain_scores_gemma":[0.99813944,0.00018857642,0.00017427134,0.0003732673,0.00012027434,0.0010041733],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010907491,0.00024231015,0.0004067728,0.00019267555,0.00018491698,0.000008962519,0.00007857076,0.00006133458,0.0002754021],"category_scores_gemma":[0.0005211061,0.00021713278,0.00021116562,0.00027285045,0.00010965166,0.00018910687,0.000051277744,0.00019202172,0.000042741554],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023119876,0.00046020895,0.98953986,0.00021083288,0.00013901273,0.00003098401,0.000050783296,0.00015107218,0.0037488611,0.00006448655,0.005254968,0.0003258054],"study_design_scores_gemma":[0.00058537564,0.00007127589,0.964654,0.00015877021,0.0004438083,0.00004729304,0.000044745502,0.000016768447,0.00036992395,0.0000381886,0.033346858,0.0002229399],"about_ca_topic_score_codex":0.018423235,"about_ca_topic_score_gemma":0.0408464,"teacher_disagreement_score":0.02809189,"about_ca_system_score_codex":0.00023837756,"about_ca_system_score_gemma":0.001199899,"threshold_uncertainty_score":0.98811316},"labels":[],"label_agreement":null},{"id":"W2144729853","doi":"10.6000/1929-6029.2015.04.03.2","title":"Supplementing Missing Self-Reported Race Data with a Probability Distribution in Logistic Regression Models","year":2015,"lang":"en","type":"article","venue":"International Journal of Statistics in Medical Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"National Center for Research Resources; Centers for Disease Control and Prevention; National Institutes of Health","keywords":"Categorical variable; Statistics; Missing data; Logistic regression; Econometrics; Mathematics; Race (biology); Estimator","score_opus":0.3094708227240504,"score_gpt":0.5223042274735936,"score_spread":0.2128334047495432,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144729853","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5165006,0.00023209512,0.4561555,0.02423549,0.0007815222,0.0006813294,0.00042339967,0.000026065034,0.0009640069],"genre_scores_gemma":[0.9869123,0.00016048992,0.012343172,0.00007771462,0.00021898861,0.0000058029473,0.00024852532,0.000010247794,0.00002276364],"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9946801,0.0003819233,0.0008272884,0.00021573351,0.0036162704,0.0002786561],"domain_scores_gemma":[0.99613327,0.0009519555,0.00024140756,0.00024707333,0.0020264168,0.0003998904],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.00859707,0.000089158406,0.00024957902,0.00035753104,0.00004538366,0.000050526785,0.00045390587,0.000098494296,0.00008259751],"category_scores_gemma":[0.019928228,0.00006056446,0.000018701561,0.00037022933,0.00023837856,0.00022697974,0.00023701211,0.0012682712,0.0000022655915],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0035671252,0.0069073346,0.7049226,0.0004329872,0.00081920344,0.050847966,0.0022122816,0.0022457163,0.0008733038,0.011425986,0.024951838,0.19079365],"study_design_scores_gemma":[0.022754986,0.002840886,0.089499064,0.009445587,0.00020197291,0.009282784,0.0019155623,0.7289158,0.0002257307,0.092295304,0.04212131,0.00050099706],"about_ca_topic_score_codex":0.00015870204,"about_ca_topic_score_gemma":0.00023375309,"teacher_disagreement_score":0.7266701,"about_ca_system_score_codex":0.00079905184,"about_ca_system_score_gemma":0.0028839856,"threshold_uncertainty_score":0.9883273},"labels":[],"label_agreement":null},{"id":"W2145047145","doi":"10.1183/09031936.00036812","title":"Protecting the tuberculosis drug pipeline: stating the case for the rational use of fluoroquinolones","year":2012,"lang":"en","type":"review","venue":"European Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Medicine; Tuberculosis; Pneumonia; Drug; Drug resistant tuberculosis; Intensive care medicine; Lower respiratory tract infection; Respiratory tract infections; Internal medicine; Pharmacology; Mycobacterium tuberculosis; Respiratory system; Pathology","score_opus":0.1736680191682035,"score_gpt":0.3635147432760027,"score_spread":0.18984672410779918,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145047145","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0009913563,0.99323356,0.0007886876,0.0009087103,0.0009984241,0.002731587,0.00008781644,0.00004337842,0.00021650281],"genre_scores_gemma":[0.002667465,0.9814319,0.0002463609,0.0026960766,0.011194805,0.0003967219,0.00001488732,0.0003743227,0.0009774519],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9931698,0.0041630003,0.0014967959,0.0002743359,0.00042999643,0.00046608705],"domain_scores_gemma":[0.9927863,0.0041839117,0.00156732,0.0007608475,0.0005268331,0.00017478885],"candidate_categories":["sts","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.007405568,0.0004593147,0.00082717644,0.0001907911,0.0033885802,0.00025035552,0.00045139983,0.000103676066,0.00006888062],"category_scores_gemma":[0.0022332924,0.00018030462,0.0010795591,0.00039823705,0.00034087544,0.00020726146,0.00015523355,0.0028158969,0.00004074174],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023095987,0.00009149351,0.000069585105,0.0023125608,0.0006930303,0.00040201333,0.00073483784,0.000046373105,0.000086185675,0.000057308644,0.005722615,0.9897609],"study_design_scores_gemma":[0.00032569066,0.000116129755,0.00008722726,0.0024689906,0.002887402,0.017980656,0.00045769068,0.000027605392,0.000011372266,0.000002776022,0.97543687,0.00019758953],"about_ca_topic_score_codex":0.000009233273,"about_ca_topic_score_gemma":0.00001489629,"teacher_disagreement_score":0.9895633,"about_ca_system_score_codex":0.00011136752,"about_ca_system_score_gemma":0.00057828863,"threshold_uncertainty_score":0.99948466},"labels":[],"label_agreement":null},{"id":"W2145452204","doi":"10.2807/ese.17.17.20158-en","title":"Immunisation registers in Canada: progress made, current situation, and challenges for the future","year":2012,"lang":"en","type":"article","venue":"Eurosurveillance","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Immunization; Interoperability; Medicine; Population; Data sharing; Advisory committee; Vaccination; Identification (biology); Environmental health; Routine immunization; Family medicine; Political science; Computer science; Virology; Immunology; Public administration; Alternative medicine","score_opus":0.04220273158510403,"score_gpt":0.27893537662655504,"score_spread":0.23673264504145103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145452204","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8708702,0.09247231,0.000065087435,0.034042373,0.0016641148,0.00068899174,0.000013946002,0.000025067999,0.000157919],"genre_scores_gemma":[0.9936336,0.0056449785,0.000013504079,0.0002482586,0.00034678215,0.00006938683,0.0000060507027,0.000008352183,0.0000290321],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99949616,0.000045955316,0.00011742393,0.00009120862,0.00009460999,0.0001546499],"domain_scores_gemma":[0.9996179,0.000087629014,0.000053946947,0.00015213547,0.000040417537,0.000048016092],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022817605,0.00006817692,0.00009641227,0.000024634814,0.00008812002,0.0000065996132,0.00003443145,0.000020508354,0.000001914614],"category_scores_gemma":[0.000044042612,0.000045376262,0.000017057186,0.00006916646,0.000035132347,0.000043648488,0.000011300483,0.00009323591,8.7691234e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025571075,0.00004085917,0.9064378,0.00014252156,0.000011916763,8.561484e-7,0.0006939168,0.0000055471783,0.00026776196,0.0002981818,0.00049346173,0.09158162],"study_design_scores_gemma":[0.00027723124,0.000017822495,0.7440192,0.000017736887,0.0000050775616,0.000012775051,0.00020569815,0.00006687203,0.000012290932,0.00000478587,0.25532013,0.000040343082],"about_ca_topic_score_codex":0.0024960109,"about_ca_topic_score_gemma":0.10965896,"teacher_disagreement_score":0.2548267,"about_ca_system_score_codex":0.00008823345,"about_ca_system_score_gemma":0.00013179211,"threshold_uncertainty_score":0.9065874},"labels":[],"label_agreement":null},{"id":"W2145526049","doi":"10.1128/aac.01260-07","title":"Increasing Genetic Relatedness of Ciprofloxacin-Resistant <i>Streptococcus pneumoniae</i> Isolated in Canada from 1997 to 2005","year":2008,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Shared Health; Health Sciences Centre","funders":"","keywords":"Pulsed-field gel electrophoresis; Streptococcus pneumoniae; Ciprofloxacin; Microbiology; Biology; Gel electrophoresis; Homogeneity (statistics); Genotype; Streptococcaceae; Genetics; Gene; Antibiotics","score_opus":0.010434598458515342,"score_gpt":0.2237372747076133,"score_spread":0.21330267624909793,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145526049","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966332,0.000037054815,0.00001440589,0.0025793745,0.00013074029,0.00039090577,0.00008435501,0.000019564548,0.00011040834],"genre_scores_gemma":[0.98887527,0.0005659423,0.00008438116,0.010260537,0.0000519732,0.000006716149,0.000021276983,0.000029082757,0.00010480524],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99881905,0.000042592055,0.00040358788,0.0002957718,0.00013892082,0.00030005895],"domain_scores_gemma":[0.9994195,0.000027067292,0.00009560263,0.00021487335,0.00006102249,0.00018194],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000048121998,0.00019112945,0.00039186914,0.00010390092,0.00010433234,0.000007575215,0.00007368615,0.0000958455,0.00010718621],"category_scores_gemma":[0.000011728314,0.00016970701,0.000055839773,0.00026213712,0.000059334227,0.000036644684,0.000025029007,0.0001636776,0.00000509796],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017446134,0.00012095279,0.46486923,0.000020741558,0.00006365417,0.00015003685,0.00029340875,0.00002186677,0.52846557,3.1907624e-7,0.005116944,0.00070280285],"study_design_scores_gemma":[0.0023654029,0.0001373261,0.93868816,0.0002602571,0.000034162404,0.00008462495,0.00006421189,0.00010843693,0.029422173,0.000002967934,0.028587185,0.0002451103],"about_ca_topic_score_codex":0.3789205,"about_ca_topic_score_gemma":0.16388395,"teacher_disagreement_score":0.4990434,"about_ca_system_score_codex":0.00015434217,"about_ca_system_score_gemma":0.00049963023,"threshold_uncertainty_score":0.85137296},"labels":[],"label_agreement":null},{"id":"W2145653012","doi":"10.1586/14760584.2.5.619","title":"Heptavalent pneumococcal conjugate vaccine: current and future impact","year":2003,"lang":"en","type":"review","venue":"Expert Review of Vaccines","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Streptococcus pneumoniae; Immunogenicity; Pneumococcal disease; Pneumococcal conjugate vaccine; Conjugate vaccine; Immunology; Pneumococcal infections; Pneumococcal vaccine; Licensure; Disease; Vaccination; Immunization; Intensive care medicine; Pediatrics; Antibiotics; Microbiology; Antigen; Internal medicine; Biology","score_opus":0.031137879643910814,"score_gpt":0.41464177263457225,"score_spread":0.38350389299066145,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145653012","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000013431705,0.9949383,0.0000038979806,0.0006003122,0.0014542912,0.0024107303,0.0000517488,0.00006402441,0.00046322832],"genre_scores_gemma":[0.0000010230993,0.9968383,0.000031214542,0.00058819936,0.0019414375,0.00028507973,0.00011354395,0.00009485329,0.000106376094],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9967443,0.00031335812,0.0015778469,0.00063398655,0.00031274924,0.00041778144],"domain_scores_gemma":[0.9975692,0.00009735803,0.0007711824,0.00088320684,0.00026555528,0.0004134964],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003728151,0.0009100182,0.0048057176,0.000297576,0.00010049014,0.000019455429,0.00019335454,0.0003189484,0.00085248624],"category_scores_gemma":[0.00012649388,0.000521424,0.0017818918,0.0005948618,0.00003365038,0.00008918846,0.00008718301,0.00068110623,0.00007077099],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000041528033,0.00017618832,0.00006421261,0.21017659,0.00029855315,0.000016240112,0.000014119248,7.0679476e-9,0.000013168731,0.000024939962,0.01240207,0.77680975],"study_design_scores_gemma":[0.00037884238,0.0002747645,0.00014699736,0.16164924,0.0016088054,0.0011786027,0.0000053265803,2.6809832e-7,0.0000021083126,0.0000018197366,0.8343728,0.00038042304],"about_ca_topic_score_codex":0.0000049587447,"about_ca_topic_score_gemma":9.2248e-7,"teacher_disagreement_score":0.82197076,"about_ca_system_score_codex":0.00013209038,"about_ca_system_score_gemma":0.00054132997,"threshold_uncertainty_score":0.99972373},"labels":[],"label_agreement":null},{"id":"W2146014142","doi":"10.1086/529440","title":"At the Threshold: Defining Clinically Meaningful Resistance Thresholds for Antibiotic Choice in Community‐Acquired Pneumonia","year":2008,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; Toronto Public Health; Health Sciences Centre; Mount Sinai Hospital; Institute for Clinical Evaluative Sciences; Sunnybrook Health Science Centre","funders":"National Institute of Allergy and Infectious Diseases; Sanofi Pasteur","keywords":"Medicine; Community-acquired pneumonia; Pneumonia; Intensive care medicine; Bacteremia; Epidemiology; Confidence interval; Mortality rate; Antibiotic resistance; Internal medicine; Antibiotics","score_opus":0.06651602124114252,"score_gpt":0.37790500116021475,"score_spread":0.3113889799190722,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146014142","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9881735,0.0010797338,0.00004583175,0.001714623,0.0008167444,0.0010943462,0.000069369926,0.00032473757,0.0066811303],"genre_scores_gemma":[0.9912318,0.00066462357,0.000015983689,0.0062212413,0.00044552356,0.00012452573,0.000052639087,0.000070314774,0.0011733327],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9963325,0.00062012114,0.0015388082,0.0005626937,0.000334373,0.0006114482],"domain_scores_gemma":[0.99118507,0.0065504475,0.0003977361,0.0011723896,0.00025460948,0.00043975547],"candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.0013242858,0.00035805535,0.0009151046,0.00015732388,0.0015859649,0.000043377975,0.0003234397,0.00034750268,0.00005743372],"category_scores_gemma":[0.006535105,0.00026175656,0.0007692682,0.0005692745,0.0012913441,0.00014286632,0.00022999843,0.000891438,0.00012995768],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022840116,0.0019464699,0.993019,0.0001322263,0.00014593049,0.0000696015,0.00012736955,0.00007493488,0.0003755269,0.00023163196,0.0031324255,0.00051649584],"study_design_scores_gemma":[0.0040427633,0.0013350513,0.9777444,0.00036809765,0.00032827765,0.000067870846,0.00006416828,0.00011024511,0.000028429627,0.0006645611,0.014927161,0.0003189835],"about_ca_topic_score_codex":0.00004865021,"about_ca_topic_score_gemma":0.0019330278,"teacher_disagreement_score":0.015274595,"about_ca_system_score_codex":0.00019326438,"about_ca_system_score_gemma":0.00040311925,"threshold_uncertainty_score":0.9999835},"labels":[],"label_agreement":null},{"id":"W2146143720","doi":"10.1128/jcm.05084-11","title":"International Circumpolar Surveillance Interlaboratory Quality Control Program for Serotyping Haemophilus influenzae and Serogrouping Neisseria meningitidis, 2005 to 2009","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ste. Anne's Hospital; Provincial Laboratory of Public Health; Public Health Agency of Canada","funders":"","keywords":"Neisseria meningitidis; Serotype; Haemophilus influenzae; Concordance; Microbiology; Circumpolar star; Population; Virology; Biology; Medicine; Environmental health; Bacteria; Internal medicine; Genetics; Antibiotics","score_opus":0.08083766168868091,"score_gpt":0.4220358772070328,"score_spread":0.3411982155183519,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146143720","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9928437,0.00037506764,0.0017331475,0.0024042772,0.0018649742,0.00056734344,0.00007093614,0.000032363176,0.00010819894],"genre_scores_gemma":[0.9921944,0.000094564406,0.0027572839,0.0040818923,0.00081031217,0.000018636734,0.0000069519856,0.000018578932,0.000017362376],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99758035,0.00029552108,0.0015542638,0.00023694054,0.000045165598,0.00028774946],"domain_scores_gemma":[0.9976422,0.00049456576,0.0007474302,0.00015734737,0.0006500413,0.000308382],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023193134,0.00015834767,0.0007987621,0.00016144519,0.00007262969,0.000020371428,0.00016039982,0.00025439836,0.000045806657],"category_scores_gemma":[0.0018849635,0.0001257314,0.00026584696,0.00009601746,0.00016775289,0.000116260526,0.000044519864,0.0004691956,0.000007183999],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024945834,0.0006685419,0.676638,0.0000724223,0.00080829323,0.000025717492,0.00022190732,0.000003966839,0.29780737,0.00010130969,0.0014775554,0.0196803],"study_design_scores_gemma":[0.0066185803,0.0036598146,0.65629613,0.00022509076,0.00012418912,0.00094008975,0.00012473365,0.000025698071,0.0008725398,0.00009614772,0.33078218,0.00023479311],"about_ca_topic_score_codex":0.0000071601075,"about_ca_topic_score_gemma":0.000022496199,"teacher_disagreement_score":0.3293046,"about_ca_system_score_codex":0.0000457594,"about_ca_system_score_gemma":0.0001940817,"threshold_uncertainty_score":0.5127178},"labels":[],"label_agreement":null},{"id":"W2146221111","doi":"10.1016/j.ijid.2015.05.003","title":"Redefining risk categories for pneumococcal disease in adults: critical analysis of the evidence","year":2015,"lang":"en","type":"review","venue":"International Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"","keywords":"Medicine; Comorbidity; Population; Odds ratio; COPD; Pneumococcal pneumonia; Incidence (geometry); Disease; Pneumonia; Diabetes mellitus; Pneumococcal disease; Pediatrics; Internal medicine; Intensive care medicine; Environmental health; Streptococcus pneumoniae","score_opus":0.04792472850816446,"score_gpt":0.404990625299457,"score_spread":0.3570658967912925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146221111","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.008500368,0.9876384,0.00018959615,0.00033497324,0.0018805071,0.00051688054,0.0008562864,0.000017535076,0.00006542719],"genre_scores_gemma":[0.186148,0.81305015,0.000008378726,0.000068867615,0.0005721657,0.000077185105,0.00003217263,0.000027193904,0.00001585791],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9972082,0.00030404443,0.0013280533,0.0002316733,0.0007454335,0.00018263758],"domain_scores_gemma":[0.9946213,0.0015992789,0.0012644097,0.00028093395,0.0019186044,0.0003154731],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.00046704954,0.0002721802,0.0014963392,0.0013007764,0.000073025134,0.000048546382,0.00039311766,0.00013456466,0.000034145192],"category_scores_gemma":[0.011960286,0.00016760183,0.0022411596,0.0008957895,0.00023746288,0.00019504676,0.000090134556,0.00049786473,0.0000023100556],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00079861394,0.002104639,0.79339767,0.008964371,0.012320852,0.0003615656,0.00027018046,0.0011361684,0.000004191769,0.00088449375,0.00045472808,0.17930253],"study_design_scores_gemma":[0.003682055,0.0015215514,0.26624888,0.12899376,0.13347061,0.00068262813,0.00019960661,0.0006131299,0.0000022749225,0.0025398189,0.461129,0.00091668044],"about_ca_topic_score_codex":0.00004610586,"about_ca_topic_score_gemma":0.000046490342,"teacher_disagreement_score":0.5271488,"about_ca_system_score_codex":0.0005230065,"about_ca_system_score_gemma":0.0021393658,"threshold_uncertainty_score":0.9963624},"labels":[],"label_agreement":null},{"id":"W2146630611","doi":"10.1016/j.ahj.2015.04.028","title":"Intermediate and long-term risk of new-onset heart failure after hospitalization for pneumonia in elderly adults","year":2015,"lang":"en","type":"article","venue":"American Heart Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":74,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Ottawa Hospital","funders":"National Center for Advancing Translational Sciences; National Institute of General Medical Sciences; National Heart, Lung, and Blood Institute; National Institute on Aging","keywords":"Medicine; Pneumonia; Hazard ratio; Proportional hazards model; Heart failure; Internal medicine; Censoring (clinical trials); Confidence interval; Pediatrics; Pathology","score_opus":0.012298081547976923,"score_gpt":0.2933816296961025,"score_spread":0.2810835481481256,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146630611","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963288,0.00016664564,0.00041921725,0.0025794506,0.0001856156,0.0002824929,0.000017719944,0.000014797939,0.0000052795735],"genre_scores_gemma":[0.99850494,0.0001027449,0.00053490896,0.00055255584,0.00022373551,0.000018117356,0.0000046850005,0.000020516103,0.00003779071],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99898994,0.0000861576,0.00035605958,0.00015931453,0.0001757848,0.00023275733],"domain_scores_gemma":[0.99906397,0.000058350015,0.00017743224,0.00013503528,0.00016871773,0.00039651958],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024157696,0.00012892092,0.0003687423,0.0002347398,0.00005109348,0.000025683046,0.00003822048,0.000053378346,0.000014778469],"category_scores_gemma":[0.00022009076,0.0001052233,0.00010865675,0.00022571684,0.00017538822,0.0001368847,0.000018580626,0.00027590545,0.000005746105],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028736072,0.00008475333,0.99187887,0.000025729547,0.000034844517,0.000013352736,0.0007945917,0.000006989307,0.0011570503,4.65832e-7,0.001946028,0.0037699547],"study_design_scores_gemma":[0.0017296684,0.0031625284,0.9902981,0.00023986593,0.00006985498,0.000896546,0.0004389743,0.000057480716,0.00018965853,0.000038698134,0.002770252,0.000108354165],"about_ca_topic_score_codex":0.00011971067,"about_ca_topic_score_gemma":0.00026824104,"teacher_disagreement_score":0.0036616006,"about_ca_system_score_codex":0.000057160956,"about_ca_system_score_gemma":0.00024717595,"threshold_uncertainty_score":0.42908815},"labels":[],"label_agreement":null},{"id":"W2146638369","doi":"10.1007/bf03404335","title":"Uptake of Pneumococcal Conjugate Vaccine: Methodological Issues in Measurement and Impact of Publicly Funded Programs","year":2009,"lang":"en","type":"article","venue":"Canadian Journal of Public Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke; Centre hospitalier universitaire de Québec; Institut National de Santé Publique du Québec; Université Laval","funders":"","keywords":"Vaccination; Immunization; Pneumococcal conjugate vaccine; Herd immunity; Immunization program; Medicine; Booster (rocketry); Booster dose; Population; Environmental health; Public health; Conjugate vaccine; Family medicine; Demography; Immunology; Streptococcus pneumoniae","score_opus":0.25372448727691466,"score_gpt":0.41369680132046605,"score_spread":0.1599723140435514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146638369","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96051013,0.0014776647,0.00013187884,0.037220895,0.00009643868,0.0003170116,0.000007771676,0.00000599835,0.00023220216],"genre_scores_gemma":[0.9987312,0.00016697358,0.00044636428,0.0005444809,0.00008815921,0.0000018637647,0.0000022213562,0.000007765443,0.000010964076],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99754655,0.00045301145,0.0010166949,0.00013520104,0.00031040757,0.00053815776],"domain_scores_gemma":[0.9965426,0.000053961885,0.0004930926,0.00016513804,0.00072015915,0.0020250939],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0051213196,0.00013815987,0.0007681588,0.00079944934,0.000059561076,0.000032501048,0.000111699206,0.0001166013,0.000067781606],"category_scores_gemma":[0.0016864514,0.00009730824,0.00017357283,0.0005609214,0.00009018467,0.00016648756,0.0000055666724,0.00040429895,4.6678718e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047613397,0.00034788242,0.8446657,0.00012451292,0.00015383438,0.00011112753,0.00083477714,0.0000072174,0.0055359458,0.000753853,0.0006362724,0.14678128],"study_design_scores_gemma":[0.0013146156,0.004975636,0.9817948,0.00016868027,0.00001809891,0.0006473905,0.0003294736,0.000015004,0.000051714662,0.00022868933,0.010385429,0.00007047124],"about_ca_topic_score_codex":0.009234355,"about_ca_topic_score_gemma":0.028420351,"teacher_disagreement_score":0.14671081,"about_ca_system_score_codex":0.00061615615,"about_ca_system_score_gemma":0.0072847507,"threshold_uncertainty_score":0.99834305},"labels":[],"label_agreement":null},{"id":"W2146831409","doi":"10.1016/s0149-2918(02)85139-6","title":"A comparison of gemifloxacin and clarithromycin in acute exacerbations of chronic bronchitis and long-term clinical outcomes","year":2002,"lang":"en","type":"article","venue":"Clinical Therapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":154,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Abbott Laboratories","keywords":"Medicine; Gemifloxacin; Chronic bronchitis; Clarithromycin; Exacerbation; Bronchitis; Regimen; Internal medicine; Respiratory tract infections; Randomized controlled trial; Sputum; Lower respiratory tract infection; Antibacterial agent; Antibiotics; Tuberculosis; Respiratory system","score_opus":0.18454128478575624,"score_gpt":0.4779295199573555,"score_spread":0.2933882351715993,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146831409","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956257,0.0019379208,0.00025518116,0.0014648625,0.00020339231,0.00030825156,0.000014188291,0.00002028234,0.0001702343],"genre_scores_gemma":[0.9929243,0.0059468187,0.00017807297,0.00069658,0.00008203969,0.0000061543233,0.000003715833,0.000016068385,0.0001462917],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978306,0.0002035557,0.001386589,0.00025873914,0.00014400798,0.00017646949],"domain_scores_gemma":[0.99823177,0.0009778042,0.00026678768,0.00031897888,0.00006929125,0.00013539917],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004391598,0.00014388085,0.00093941,0.00009723657,0.000043031734,0.000007170097,0.00006853126,0.00032809007,0.000070145856],"category_scores_gemma":[0.00010974082,0.00011539309,0.00018872165,0.00016901254,0.00073659734,0.000044721957,0.000056594425,0.00057468354,0.000004047274],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027865706,0.0013369495,0.958622,0.00006465743,0.00032841126,0.000006461002,0.00012624732,0.000003200363,0.0011235676,0.000106678504,0.000024538225,0.038229465],"study_design_scores_gemma":[0.0031420419,0.0017640091,0.9920677,0.00013571815,0.00043298633,0.00002092562,0.00003557427,0.0014324147,0.00012378267,0.00006696443,0.0006728943,0.000104985425],"about_ca_topic_score_codex":0.0000049655173,"about_ca_topic_score_gemma":0.00007158763,"teacher_disagreement_score":0.03812448,"about_ca_system_score_codex":0.000023023023,"about_ca_system_score_gemma":0.000055546323,"threshold_uncertainty_score":0.4705594},"labels":[],"label_agreement":null},{"id":"W2146853731","doi":"10.1128/jcm.40.1.68-74.2002","title":"Emergence of Penicillin-Nonsusceptible <i>Streptococcus pneumoniae</i> Invasive Clones in Canada","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Pulsed-field gel electrophoresis; Penicillin; clone (Java method); Serotype; Microbiology; Biology; Streptococcus pneumoniae; Virology; Antibiotic resistance; Antibiotics; Genotype; Gene; Genetics","score_opus":0.058241331337992884,"score_gpt":0.32889322822209455,"score_spread":0.2706518968841017,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146853731","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99452615,0.00053551025,0.000006390082,0.0027888669,0.0012528253,0.00014992619,0.000019427202,0.000003414341,0.00071746536],"genre_scores_gemma":[0.9967033,0.0015684332,0.00005938834,0.0012932386,0.00023552352,0.000002131064,0.0000016086661,0.000009982616,0.0001263468],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99717236,0.0002439195,0.0020778188,0.00016909186,0.00008225834,0.00025454504],"domain_scores_gemma":[0.99754286,0.00079361483,0.0009483982,0.0002023913,0.0003248104,0.00018791619],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00051110715,0.00013580536,0.000954962,0.0001460486,0.000028749944,0.0000020103244,0.00017685663,0.00018794434,0.0009292985],"category_scores_gemma":[0.0011048268,0.00010003739,0.0003102213,0.0002518643,0.00019283808,0.000046210524,0.000039972212,0.0007399461,0.000020736816],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000508104,0.00031565913,0.64410317,0.000033645432,0.00008910076,0.00017994129,0.000034162764,0.00003439029,0.34518307,0.0000059770446,0.008685091,0.0012849771],"study_design_scores_gemma":[0.012672587,0.0090292785,0.74520504,0.0011497667,0.00058172405,0.0054343576,0.0014876868,0.00009468665,0.046730105,0.00015268849,0.17673106,0.0007309998],"about_ca_topic_score_codex":0.011796383,"about_ca_topic_score_gemma":0.24607976,"teacher_disagreement_score":0.29845297,"about_ca_system_score_codex":0.000061166524,"about_ca_system_score_gemma":0.0013436133,"threshold_uncertainty_score":0.99998397},"labels":[],"label_agreement":null},{"id":"W2147602300","doi":"10.1086/313965","title":"Guidelines for Community-Acquired Pneumonia: A Tale of 2 Countries","year":2000,"lang":"en","type":"letter","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Intensive care medicine; Internal medicine","score_opus":0.11654694882297766,"score_gpt":0.42488078534673535,"score_spread":0.3083338365237577,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147602300","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.18781476,0.003654221,0.00025763363,0.78381145,0.0054794853,0.0050071445,0.0065687597,0.0014531349,0.005953417],"genre_scores_gemma":[0.025807122,0.0022126476,0.000020411499,0.95540273,0.010258756,0.00055946445,0.0016028438,0.00018739888,0.003948638],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9962147,0.0005421811,0.0019128702,0.00046897153,0.00037808213,0.0004832061],"domain_scores_gemma":[0.9937365,0.0028948023,0.0006324215,0.0011259916,0.0013384708,0.00027183772],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00046132202,0.00051554217,0.0017991678,0.00028446998,0.00045305616,0.00004713666,0.00026583343,0.001301538,0.00046956632],"category_scores_gemma":[0.0030590468,0.00043223024,0.0016086589,0.00021453077,0.0011040806,0.00008854981,0.00008646014,0.0015330495,0.00012241202],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000082390754,0.0010619974,0.049633186,0.0016369208,0.00076187233,0.000094047195,0.000022252336,0.000009614653,0.000053206135,0.000009993266,0.9443523,0.002282168],"study_design_scores_gemma":[0.0021524522,0.0021698682,0.019028142,0.0005921906,0.0021429516,0.000053788975,0.000018152512,0.000023775141,0.000017039003,0.00063497794,0.97276556,0.000401086],"about_ca_topic_score_codex":0.00006115167,"about_ca_topic_score_gemma":0.000025581772,"teacher_disagreement_score":0.17159127,"about_ca_system_score_codex":0.000083789484,"about_ca_system_score_gemma":0.00076940545,"threshold_uncertainty_score":0.999995},"labels":[],"label_agreement":null},{"id":"W2147690018","doi":"10.1099/jmm.0.46268-0","title":"Pneumococcal surface protein A (PspA) family distribution among clinical isolates from adults over 50 years of age collected in seven countries","year":2006,"lang":"en","type":"article","venue":"Journal of Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":91,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"Sanofi Pasteur; Centers for Disease Control and Prevention; Queensland Health; Karolinska Institutet; Sanofi","keywords":"Microbiology; Streptococcus pneumoniae; Surface protein; Pneumococcal disease; Biology; Distribution (mathematics); Medicine; Immunology; Virology; Antibiotics; Mathematics","score_opus":0.009069076866472044,"score_gpt":0.279674478432375,"score_spread":0.2706054015659029,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147690018","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99741465,0.00034752875,0.00013063253,0.0012707838,0.00038246592,0.00027894048,0.00013916029,0.000012515716,0.000023333107],"genre_scores_gemma":[0.999106,0.00014244243,0.00005973549,0.00022444407,0.00031911256,0.0000027307747,0.00008454692,0.000011522341,0.000049480666],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9976656,0.00036814713,0.0013100997,0.00018198967,0.0002146816,0.0002594946],"domain_scores_gemma":[0.9985401,0.00044242124,0.0005304317,0.00012841685,0.0001826731,0.00017592858],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00087530323,0.0001379721,0.0007657651,0.0001083003,0.000032335458,0.000007818355,0.00016514807,0.00065058004,0.00015330416],"category_scores_gemma":[0.00079804746,0.00010765345,0.00021513402,0.00024222926,0.00057876663,0.00005223086,0.00004962264,0.00092836923,0.000008493249],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009339566,0.00082838273,0.34966892,0.00004410331,0.00014346246,0.00065035565,0.00011733649,0.0000118969265,0.64370865,0.00001968018,0.0035736018,0.00029966957],"study_design_scores_gemma":[0.0053057307,0.0010439941,0.966114,0.0008124086,0.000074724216,0.00025618458,0.0000730937,0.00007081352,0.002043374,0.00006622238,0.024028916,0.00011052983],"about_ca_topic_score_codex":0.0007417334,"about_ca_topic_score_gemma":0.0005419381,"teacher_disagreement_score":0.6416653,"about_ca_system_score_codex":0.0001142224,"about_ca_system_score_gemma":0.0005380211,"threshold_uncertainty_score":0.5017869},"labels":[],"label_agreement":null},{"id":"W2147917069","doi":"10.1093/jac/dkl152","title":"Comparative in vitro activity of PGE 9262932 and fluoroquinolones against Canadian clinical Streptococcus pneumoniae isolates, including molecularly characterized ciprofloxacin-resistant isolates","year":2006,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba","funders":"","keywords":"Ciprofloxacin; Streptococcus pneumoniae; Microbiology; In vitro; Biology; Antibiotics","score_opus":0.02734524474236946,"score_gpt":0.3096142188117788,"score_spread":0.2822689740694094,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147917069","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99595624,0.00014962745,0.000049859354,0.00306337,0.0002060733,0.00038757274,0.00004296949,0.000012861956,0.00013140793],"genre_scores_gemma":[0.998143,0.00040513137,0.00023739957,0.0009463694,0.00020646404,0.0000023251973,0.0000068157847,0.000028761939,0.00002373693],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980535,0.00016309356,0.0010412214,0.00024217927,0.00013734173,0.0003626493],"domain_scores_gemma":[0.9984993,0.00009647221,0.0007360118,0.00018225607,0.00025887854,0.00022709538],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000444627,0.00026616073,0.0011092586,0.000527865,0.000119036566,0.000042033527,0.000121530706,0.00024017693,0.0000127279845],"category_scores_gemma":[0.00003360976,0.00022575233,0.0002903437,0.00031206862,0.0002179076,0.00021805489,0.000023793928,0.0006343142,0.0000017367125],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001122549,0.00047443368,0.03854287,0.00004987767,0.00018047585,0.00010049589,0.0002555187,0.0000055203022,0.9580132,0.0000027704627,0.00013846438,0.0011138557],"study_design_scores_gemma":[0.005295954,0.00069622986,0.27859944,0.0003484637,0.000075057666,0.000100811674,0.00005136913,0.000174713,0.7120011,0.000011960459,0.002402714,0.0002422322],"about_ca_topic_score_codex":0.0021352652,"about_ca_topic_score_gemma":0.001896046,"teacher_disagreement_score":0.2460121,"about_ca_system_score_codex":0.00017035456,"about_ca_system_score_gemma":0.0005419973,"threshold_uncertainty_score":0.9205913},"labels":[],"label_agreement":null},{"id":"W2147990519","doi":"10.1128/aac.44.11.3049-3054.2000","title":"Fluoroquinolone Resistance in Clinical Isolates of <i>Streptococcus pneumoniae</i> : Contributions of Type II Topoisomerase Mutations and Efflux to Levels of Resistance","year":2000,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":121,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen Elizabeth II Health Sciences Centre; University Health Network; University of Toronto; Dalhousie University; Hamilton Health Sciences; McMaster University","funders":"Medical Research Council; Medical Research Council Canada","keywords":"Efflux; Ciprofloxacin; Biology; Microbiology; Streptococcus pneumoniae; Topoisomerase IV; Amino acid substitution; Quinolone; Amino acid; Cross-resistance; Streptococcaceae; Mutation; DNA gyrase; Genetics; Gene; Antibiotics; Escherichia coli","score_opus":0.01683226412214952,"score_gpt":0.3138974713780354,"score_spread":0.2970652072558859,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147990519","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994621,0.000111519556,0.000011547641,0.0042834138,0.00004331201,0.00037933604,0.0001917467,0.000010095065,0.00034807317],"genre_scores_gemma":[0.99659485,0.0010677689,0.00015788646,0.0013246336,0.000025008641,0.0000051692477,0.0000080574655,0.000011297518,0.000805335],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989238,0.00004300903,0.0005993032,0.00020907623,0.00007185198,0.00015300646],"domain_scores_gemma":[0.9993804,0.00006593531,0.00013600285,0.00018627736,0.00014804285,0.00008336055],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013787033,0.00011767502,0.0004430925,0.0000922974,0.00007489334,0.00000428481,0.00005210773,0.00010305104,0.00013767209],"category_scores_gemma":[0.000044779496,0.00010565698,0.00007203992,0.0003164456,0.00024130392,0.000045471388,0.000016004506,0.00010923848,0.0000015732187],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00067228224,0.0011954545,0.20322326,0.00029215147,0.0001803527,0.000007710637,0.0013850174,0.000011651053,0.7845802,0.00014105986,0.00315941,0.0051515005],"study_design_scores_gemma":[0.0040851836,0.0006470488,0.86587524,0.00069180137,0.00007698528,0.000007553283,0.00005134312,0.0000097367365,0.0996516,0.00009593252,0.028631747,0.00017580691],"about_ca_topic_score_codex":0.000022774397,"about_ca_topic_score_gemma":0.000078547826,"teacher_disagreement_score":0.68492854,"about_ca_system_score_codex":0.000013296035,"about_ca_system_score_gemma":0.00006901917,"threshold_uncertainty_score":0.43085665},"labels":[],"label_agreement":null},{"id":"W2148356388","doi":"10.1086/653112","title":"Improving the Immunogenicity of Pneumococcal Conjugate Vaccine in HIV‐Infected Adults with a Toll‐Like Receptor 9 Agonist Adjuvant: A Randomized, Controlled Trial","year":2010,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"","keywords":"Medicine; Immunogenicity; Adjuvant; Pneumococcal conjugate vaccine; Agonist; Toll-like receptor; Virology; Streptococcus pneumoniae; Immunology; Conjugate; Receptor; Antibody; Internal medicine; Microbiology; Immune system; Antibiotics; Biology; Innate immune system","score_opus":0.008902687124246841,"score_gpt":0.28970913650549485,"score_spread":0.280806449381248,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148356388","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9885719,0.0002125671,0.000069716494,0.00063285517,0.0018805848,0.007872538,0.00006109595,0.00021668602,0.00048206717],"genre_scores_gemma":[0.9969752,0.00017735461,0.000008074389,0.0005920317,0.0007478366,0.001291502,0.000044092947,0.00005000292,0.000113894115],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9953197,0.0010691566,0.0021875796,0.0005904283,0.00036254077,0.00047055687],"domain_scores_gemma":[0.992865,0.004526296,0.00095048884,0.0007939313,0.0004626871,0.00040156353],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016533514,0.00043921944,0.0030443221,0.00022108221,0.00027697452,0.000057465408,0.00020250714,0.00035459886,0.00030208204],"category_scores_gemma":[0.008183646,0.00023645803,0.0014452921,0.0004944172,0.0009327008,0.00012705625,0.00009542545,0.0013303877,0.000042185715],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.8070758,0.0039479015,0.17836252,0.0001020243,0.0007856431,0.000041612024,0.000072925504,0.000012991308,0.008257818,0.00010522086,0.0000915224,0.0011440263],"study_design_scores_gemma":[0.91093713,0.0027001158,0.08278786,0.00020453578,0.0016547112,0.000044870376,0.00004658696,0.0006593574,0.00014056916,0.000047720714,0.0004895928,0.00028696895],"about_ca_topic_score_codex":0.00017824308,"about_ca_topic_score_gemma":0.0007389805,"teacher_disagreement_score":0.10386132,"about_ca_system_score_codex":0.000053652995,"about_ca_system_score_gemma":0.0007680495,"threshold_uncertainty_score":0.9797179},"labels":[],"label_agreement":null},{"id":"W2148933559","doi":"10.1128/jcm.43.1.74-83.2005","title":"Molecular Epidemiology of Pneumococcal Colonization in Response to Pneumococcal Conjugate Vaccination in Children with Recurrent Acute Otitis Media","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Fondation pour la Recherche Médicale","keywords":"Pneumococcal conjugate vaccine; Vaccination; Serotype; Streptococcus pneumoniae; Pneumococcal infections; Population; Biology; Virology; Otitis; Conjugate vaccine; Immunology; Medicine; Microbiology; Genetics","score_opus":0.027987927982250662,"score_gpt":0.3742701087044429,"score_spread":0.34628218072219225,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148933559","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9888131,0.00014687558,0.0003280402,0.009896738,0.00033092924,0.0004376556,0.000020344369,0.0000073842675,0.000018925773],"genre_scores_gemma":[0.9974641,0.00020681074,0.0006621078,0.0014108897,0.00020538112,0.000008286957,0.000018483113,0.000015992668,0.000007901399],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9953254,0.0016643049,0.0023681999,0.00026723996,0.00006802379,0.0003068649],"domain_scores_gemma":[0.99689686,0.0014856904,0.00087976863,0.00018264962,0.00033841137,0.00021659485],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0034381177,0.00017007289,0.0012110115,0.00061063847,0.00002010499,0.000002194505,0.00015051187,0.0004013469,0.000043553937],"category_scores_gemma":[0.0044776876,0.00012619751,0.00020157965,0.00043941953,0.00014919053,0.00007596377,0.000046422243,0.0008456283,0.000014754529],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0035633706,0.0005693016,0.73893416,0.000006761196,0.00012800383,0.00005925109,0.0000745686,0.00062222173,0.25298017,0.000037673417,0.00003734632,0.0029871499],"study_design_scores_gemma":[0.0048987754,0.004901061,0.9845338,0.00016472029,0.00010986273,0.0017657548,0.000011970083,0.000043655065,0.0018193446,0.000046335084,0.0015905076,0.000114255185],"about_ca_topic_score_codex":0.000006101192,"about_ca_topic_score_gemma":0.00014811741,"teacher_disagreement_score":0.25116083,"about_ca_system_score_codex":0.00014400347,"about_ca_system_score_gemma":0.00039922917,"threshold_uncertainty_score":0.53605336},"labels":[],"label_agreement":null},{"id":"W2149063136","doi":"10.1086/379329","title":"Azithromycin in the Treatment of Legionella Pneumonia Requiring Hospitalization","year":2003,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; University of Alberta","funders":"Centers for Disease Control and Prevention","keywords":"Azithromycin; Medicine; Legionnaires' disease; Pneumonia; Legionella pneumophila; Legionella; Internal medicine; Open label; Clinical trial; Surgery; Antibiotics; Microbiology; Bacteria","score_opus":0.05003586364787718,"score_gpt":0.3795854462271788,"score_spread":0.32954958257930167,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149063136","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937027,0.0006051597,0.00006970368,0.00028708339,0.00037842325,0.00047744505,0.000005224506,0.000058535974,0.004415711],"genre_scores_gemma":[0.99768925,0.0015508782,0.0000024286687,0.0004556735,0.00013947257,0.000062323415,0.000008730687,0.000014159855,0.00007707471],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986906,0.00024480044,0.0005276742,0.00022446208,0.00014249957,0.00016995],"domain_scores_gemma":[0.99896044,0.00038935937,0.00012721925,0.00033923832,0.00006939923,0.00011433291],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018491158,0.00013470538,0.00034973465,0.00009941486,0.000091975075,0.00001453899,0.00004411481,0.00009719799,0.00002850736],"category_scores_gemma":[0.00048175352,0.00008560065,0.00028235218,0.0003597302,0.00019758116,0.00005659542,0.000005044371,0.000095832555,0.00002571343],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008489323,0.003789303,0.992551,0.000027928083,0.000058015714,0.00003539085,0.0001712835,0.000060656166,0.00028258064,0.00090396166,0.00009477627,0.0020165627],"study_design_scores_gemma":[0.001880755,0.0025195607,0.9761565,0.00006342661,0.00022900157,0.000021863527,0.00012472409,0.000026143547,0.00012360133,0.0006924302,0.018061325,0.00010070077],"about_ca_topic_score_codex":0.00001590214,"about_ca_topic_score_gemma":0.000035544235,"teacher_disagreement_score":0.017966548,"about_ca_system_score_codex":0.000064703585,"about_ca_system_score_gemma":0.00012309014,"threshold_uncertainty_score":0.34906933},"labels":[],"label_agreement":null},{"id":"W2149128790","doi":"10.1074/jbc.m110.191148","title":"Structure-guided Antigen Engineering Yields Pneumolysin Mutants Suitable for Vaccination against Pneumococcal Disease","year":2011,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"","keywords":"Pneumolysin; Streptococcus pneumoniae; Vaccination; Pneumococcal disease; Mutant; Antigen; Microbiology; Pneumococcal infections; Virology; Biology; Immunology; Genetics; Gene; Antibiotics","score_opus":0.04822560528330795,"score_gpt":0.27888946350663685,"score_spread":0.2306638582233289,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149128790","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983678,0.000127823,0.0005263931,0.00016741848,0.00018490637,0.00014398353,0.000027682452,0.0000304869,0.00042352744],"genre_scores_gemma":[0.99893504,0.00007306721,0.00031678803,0.00014936515,0.00042850044,0.000005501948,0.000014012494,0.000012272973,0.00006545203],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999015,0.000014344546,0.00044413522,0.0001537813,0.00013567325,0.00023708165],"domain_scores_gemma":[0.99902725,0.00006621837,0.00022376134,0.0001351665,0.000228577,0.00031904195],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017757667,0.00015560434,0.00032181735,0.000053032185,0.000068704605,0.000012912452,0.00011743833,0.0002262084,0.00023775548],"category_scores_gemma":[0.00067161897,0.00010427747,0.00024548662,0.00012007957,0.000025621022,0.00007310536,0.000025331185,0.0003248665,0.0000016565266],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012624236,0.00015576283,0.038466293,0.000089819034,0.000073837604,0.00010335706,0.000024348084,0.000041328603,0.9603304,0.0000071305585,0.00006693971,0.0005145126],"study_design_scores_gemma":[0.0011942754,0.0003288233,0.405564,0.00010490455,0.00010873323,0.00043026436,0.000039759605,0.00033244185,0.58938795,0.00018603314,0.002121793,0.00020102486],"about_ca_topic_score_codex":4.711337e-7,"about_ca_topic_score_gemma":9.6161386e-8,"teacher_disagreement_score":0.37094247,"about_ca_system_score_codex":0.000072488656,"about_ca_system_score_gemma":0.0001068476,"threshold_uncertainty_score":0.4252312},"labels":[],"label_agreement":null},{"id":"W2149581172","doi":"10.1093/jac/48.3.407","title":"In vitro activity of a novel ketolide ABT-773 against invasive strains of Streptococcus pneumoniae","year":2001,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"Abbott Canada","keywords":"Ketolide; Microbiology; Streptococcus pneumoniae; Erythromycin; Cefuroxime; Penicillin; Telithromycin; Antibiotics; Antibacterial agent; Clarithromycin; Biology","score_opus":0.019704129417519003,"score_gpt":0.28824245209325494,"score_spread":0.26853832267573596,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149581172","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948407,0.000018989407,0.00022941151,0.0038039023,0.0001980913,0.00028124845,0.00003252439,0.000007679426,0.0005874752],"genre_scores_gemma":[0.99723077,0.0006380119,0.00026803205,0.0015284109,0.0002097595,0.0000013399507,0.0000015645066,0.000028879193,0.0000932531],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985737,0.000047676294,0.0007173738,0.00015348263,0.0002524428,0.00025529842],"domain_scores_gemma":[0.9983713,0.00007847841,0.00088453817,0.00021710568,0.00032146228,0.00012710824],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026977787,0.00020293822,0.0007994723,0.0004851166,0.00003566879,0.0000094838615,0.00015331183,0.00016627027,0.000039948853],"category_scores_gemma":[0.00008316893,0.00016930548,0.00039597915,0.00046500363,0.00017209632,0.00021113078,0.000017462175,0.0004558313,0.0000011531126],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006516769,0.001905812,0.012169291,0.00010196194,0.0001955555,0.00013014677,0.0004068821,0.00012066726,0.98172975,0.0000033088845,0.00044189816,0.0021430352],"study_design_scores_gemma":[0.0063313926,0.0005324523,0.02985484,0.0003973157,0.00005089057,0.00047040585,0.00008254147,0.000029939472,0.9594852,0.0000061972582,0.0026218947,0.00013697612],"about_ca_topic_score_codex":0.000026612322,"about_ca_topic_score_gemma":0.00003139585,"teacher_disagreement_score":0.02224461,"about_ca_system_score_codex":0.00011305213,"about_ca_system_score_gemma":0.000535968,"threshold_uncertainty_score":0.6904077},"labels":[],"label_agreement":null},{"id":"W2149689345","doi":"10.1186/gb-2011-12-11-r115","title":"Whole genome sequencing of penicillin-resistant Streptococcus pneumoniae reveals mutations in penicillin-binding proteins and in a putative iron permease","year":2011,"lang":"en","type":"article","venue":"Genome biology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval","funders":"University of Toronto; Canada Research Chairs; McGill University; Canadian Institutes of Health Research; Université Laval","keywords":"Penicillin binding proteins; Streptococcus pneumoniae; Penicillin; Gene; Microbiology; Biology; Whole genome sequencing; Genome; Permease; Mutation; Genetics; Antibiotics; Escherichia coli","score_opus":0.04561069981671511,"score_gpt":0.2863580867299844,"score_spread":0.2407473869132693,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149689345","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997105,0.00035189049,0.000049842412,0.00019459422,0.000047612295,0.0012702332,0.00022325113,0.000026971742,0.0007305752],"genre_scores_gemma":[0.9991391,0.00005202448,0.00022662712,0.00011098932,0.000036808637,0.00021307782,0.0000867423,0.000021938384,0.00011271975],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9982036,0.00020612271,0.00065294217,0.00043375665,0.00008790095,0.00041568797],"domain_scores_gemma":[0.999179,0.00008563564,0.00022438812,0.00024863493,0.00012007336,0.00014223631],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040801588,0.00021278461,0.0005328333,0.00059530616,0.00009030883,0.0000059360386,0.00009693348,0.00019463469,0.00007670838],"category_scores_gemma":[0.0001929783,0.00018686944,0.00007924331,0.00041020135,0.00028755513,0.00007072348,0.00006588075,0.00032128152,0.000023196813],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007068525,0.00013051233,0.10209737,0.00009754285,0.000028066122,0.0000982698,0.0046819975,0.00005005601,0.8925073,0.00011869286,2.0900673e-7,0.00011931161],"study_design_scores_gemma":[0.0020932185,0.0014344448,0.98573405,0.00014084572,0.00008654463,0.00006187005,0.003664378,0.00007378446,0.0050977995,0.0008529688,0.0004210291,0.00033905878],"about_ca_topic_score_codex":0.0003323248,"about_ca_topic_score_gemma":0.00055305904,"teacher_disagreement_score":0.8874095,"about_ca_system_score_codex":0.00032036993,"about_ca_system_score_gemma":0.00029338067,"threshold_uncertainty_score":0.7620315},"labels":[],"label_agreement":null},{"id":"W2149815513","doi":"10.1503/cmaj.080285","title":"The treatment of acute bacterial sinusitis: No change is good medicine","year":2008,"lang":"en","type":"letter","venue":"Canadian Medical Association Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario","funders":"","keywords":"Nagging; Sinusitis; Medicine; Intensive care medicine; Dilemma; Alternative medicine; Surgery; Pathology","score_opus":0.018552807269574804,"score_gpt":0.2592082457166865,"score_spread":0.24065543844711168,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149815513","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0041559013,0.0005331855,9.705597e-7,0.98361355,0.0061851256,0.00036630416,0.00031549647,0.000017747072,0.004811697],"genre_scores_gemma":[0.0006001978,0.01963474,0.0000052451383,0.8804802,0.08804753,0.000053760705,0.0002148349,0.000057599817,0.010905947],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9962082,0.00024503158,0.0007834371,0.00021720795,0.0018604102,0.0006857321],"domain_scores_gemma":[0.9967878,0.00029890623,0.0006450361,0.00025993414,0.0008231839,0.0011851239],"candidate_categories":["research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00043894327,0.00030579753,0.00074580294,0.00030770808,0.00065518287,0.000036069323,0.00020928969,0.0016728597,0.0051892716],"category_scores_gemma":[0.00034295657,0.0001845495,0.00038723098,0.00023318327,0.00021538012,0.00005689427,0.000007814459,0.0020449928,0.0002532944],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000102589,0.00003783537,0.0033402713,0.000014045116,0.001309407,0.004763613,0.0005189892,4.167534e-9,0.000026048305,0.0000021855203,0.9832377,0.0067396536],"study_design_scores_gemma":[0.0018072742,0.0011523427,0.005084462,0.00025255678,0.0006275681,0.0036414424,0.000026072921,0.0000040560544,0.00000640313,0.00000930736,0.98723745,0.00015105323],"about_ca_topic_score_codex":0.0029792816,"about_ca_topic_score_gemma":0.0045630815,"teacher_disagreement_score":0.103133425,"about_ca_system_score_codex":0.002497294,"about_ca_system_score_gemma":0.0043640956,"threshold_uncertainty_score":0.9996232},"labels":[],"label_agreement":null},{"id":"W2149850040","doi":"10.1503/cmaj.081744","title":"The controversy over the efficacy of pneumococcal vaccine","year":2009,"lang":"en","type":"letter","venue":"Canadian Medical Association Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Pneumococcal vaccine; Medicine; Systematic review; Vaccine efficacy; Meta-analysis; Intensive care medicine; MEDLINE; Streptococcus pneumoniae; Pediatrics; Virology; Microbiology; Political science; Vaccination; Internal medicine; Biology; Law; Antibiotics","score_opus":0.005954218184583562,"score_gpt":0.24610813987572625,"score_spread":0.2401539216911427,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149850040","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0065873475,0.00034462954,0.0000054325214,0.9874172,0.0018974276,0.00030334224,0.000032325923,0.000014395728,0.003397902],"genre_scores_gemma":[0.011119998,0.0004695881,0.000001397376,0.9650249,0.020333575,0.000008078741,0.000024702958,0.000031371375,0.0029864004],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99610364,0.00039717095,0.00075427117,0.00016746459,0.0019106016,0.00066686445],"domain_scores_gemma":[0.99603754,0.0016574766,0.00064022787,0.00030048413,0.0005526828,0.00081155665],"candidate_categories":["research_integrity","insufficient_payload"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0016360538,0.00022769382,0.00049772323,0.00018504109,0.0007685667,0.0001014483,0.00039411572,0.001376686,0.0013121623],"category_scores_gemma":[0.0046656984,0.00011836933,0.00046466375,0.00027516187,0.00009479995,0.000043173895,0.000014943447,0.0065387893,0.00008205425],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009286088,0.000018214774,0.0047221263,0.000007967375,0.0003639524,0.00073131145,0.00003830567,7.6346004e-7,0.00002460268,0.000027374079,0.98719424,0.0068618697],"study_design_scores_gemma":[0.0014469725,0.00013011885,0.11247546,0.00011938024,0.00022772142,0.00086115283,0.0000259452,0.000016453572,0.0000020552593,0.00005203317,0.88453805,0.00010461797],"about_ca_topic_score_codex":0.00063914165,"about_ca_topic_score_gemma":0.005715246,"teacher_disagreement_score":0.10775334,"about_ca_system_score_codex":0.0011435174,"about_ca_system_score_gemma":0.00539614,"threshold_uncertainty_score":0.9999197},"labels":[],"label_agreement":null},{"id":"W2149863800","doi":"10.1086/598197","title":"Fluoroquinolones for Treatment of Community‐Acquired Pneumonia and Tuberculosis: Putting the Risk of Resistance into Perspective","year":2009,"lang":"en","type":"letter","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Mount Sinai Hospital","funders":"","keywords":"Medicine; Pneumonia; Tuberculosis; Community-acquired pneumonia; Perspective (graphical); Intensive care medicine; Internal medicine; Pathology","score_opus":0.041413989646191154,"score_gpt":0.3686161245936685,"score_spread":0.32720213494747735,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149863800","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.80128425,0.008109031,0.000033196666,0.18660726,0.00052297924,0.0022238938,0.0006233651,0.00016863189,0.00042737048],"genre_scores_gemma":[0.9360938,0.0060252543,0.000029670096,0.054734793,0.0022375747,0.00036425883,0.00012849631,0.00007898697,0.0003071858],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99701935,0.0010607734,0.0010291191,0.00037356946,0.0002230482,0.00029416574],"domain_scores_gemma":[0.99316514,0.0043637413,0.0008672135,0.00088467624,0.00058174744,0.00013745864],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00035154528,0.0004031503,0.0013970042,0.00017770984,0.00055609783,0.000024365443,0.00015244693,0.0005986868,0.0000074673453],"category_scores_gemma":[0.0022155002,0.00026252048,0.0010366054,0.00022296656,0.0011708664,0.000053223048,0.000053652635,0.00060874183,0.0000022538893],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00062784733,0.010887925,0.75854194,0.0040456513,0.010672811,0.00011775277,0.0047332323,0.000025506679,0.001416736,0.00027454755,0.16731016,0.04134589],"study_design_scores_gemma":[0.0041181073,0.009768512,0.8408609,0.0008857625,0.0098654665,0.000024925415,0.000944531,0.000016015343,0.0001302091,0.009706232,0.12328126,0.00039808278],"about_ca_topic_score_codex":0.00030768805,"about_ca_topic_score_gemma":0.00026449404,"teacher_disagreement_score":0.13480951,"about_ca_system_score_codex":0.00019659486,"about_ca_system_score_gemma":0.00024878175,"threshold_uncertainty_score":0.9999827},"labels":[],"label_agreement":null},{"id":"W2149879965","doi":"10.1128/jcm.01807-09","title":"Characterization of<i>Streptococcus milleri</i>Group Isolates from Expectorated Sputum of Adult Patients with Cystic Fibrosis","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Fondation pour la Recherche Médicale; Calgary Laboratory Services","keywords":"Microbiology; Streptococcus anginosus; Biology; Streptococcus milleri; Sputum; Bacteroidaceae; 16S ribosomal RNA; Streptococcus; Bacteria; Genetics; Medicine; Pathology","score_opus":0.012788208972061519,"score_gpt":0.2895087149915375,"score_spread":0.276720506019476,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149879965","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985924,0.000034517303,0.00030175844,0.00031463866,0.00044620887,0.00017989811,0.00010016823,0.000007838816,0.000022573928],"genre_scores_gemma":[0.99876374,0.00005844335,0.00031429483,0.0005319813,0.0002160709,9.0082636e-7,0.00009621711,0.000009042874,0.000009329906],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99795365,0.00018197185,0.00152677,0.00014348321,0.00005757742,0.00013653906],"domain_scores_gemma":[0.99715364,0.00026511148,0.0015327561,0.0001616634,0.00077513617,0.00011167076],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014816145,0.00013116407,0.0008601787,0.00012323071,0.00002501149,0.0000035478588,0.00009148701,0.00024064507,0.00007493008],"category_scores_gemma":[0.00039136285,0.000083346946,0.00024409658,0.00017358923,0.0001595473,0.0000697293,0.000013038921,0.0003085235,0.0000047655194],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00091762317,0.0006709405,0.3336003,0.0000109922885,0.00013564051,0.0000037486407,0.000032792817,0.0000015506253,0.66357315,0.0000022643144,0.000056246092,0.0009947376],"study_design_scores_gemma":[0.0041915863,0.009175929,0.9546998,0.00035973013,0.00023398454,0.00002729262,0.000017742315,0.0000060773655,0.029530454,0.000016645086,0.0016494842,0.00009126149],"about_ca_topic_score_codex":0.0000042741935,"about_ca_topic_score_gemma":0.000002099399,"teacher_disagreement_score":0.6340427,"about_ca_system_score_codex":0.00001626877,"about_ca_system_score_gemma":0.00010671803,"threshold_uncertainty_score":0.33987898},"labels":[],"label_agreement":null},{"id":"W2150652659","doi":"10.1016/j.ijantimicag.2006.08.005","title":"Molecular characterisation of Canadian paediatric multidrug-resistant Streptococcus pneumoniae from 1998–2004","year":2006,"lang":"en","type":"article","venue":"International Journal of Antimicrobial Agents","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Canada; University of Manitoba; Manitoba Health; Health Sciences Centre","funders":"","keywords":"Streptococcus pneumoniae; Microbiology; Penicillin; Pulsed-field gel electrophoresis; Biology; Erythromycin; Multiple drug resistance; Serotype; Trimethoprim; Polymerase chain reaction; Genotype; Molecular epidemiology; Pneumococcal infections; Cefpodoxime; Drug resistance; Antibacterial agent; Antibiotics; Gene; Genetics","score_opus":0.009764840228860792,"score_gpt":0.24518031770828838,"score_spread":0.2354154774794276,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150652659","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99544394,0.000036571564,0.000099421864,0.0023890913,0.0012268395,0.00014536979,0.00028103648,0.000008551624,0.00036916893],"genre_scores_gemma":[0.99817365,0.000060639515,0.000111859146,0.0008158525,0.00066193787,0.0000013645436,0.00010811037,0.000017270777,0.000049308117],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99856997,0.000042007498,0.00068405794,0.00013092809,0.00040329495,0.00016973802],"domain_scores_gemma":[0.99856144,0.00002537327,0.000541444,0.00011137862,0.00060329796,0.00015704849],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000109806584,0.00013770249,0.0002637893,0.0010524471,0.00004601859,0.00003317637,0.00019755118,0.0000969089,0.00008715395],"category_scores_gemma":[0.00005710901,0.00012273478,0.0002599544,0.00024765535,0.000048337002,0.00014390347,0.000023177316,0.00020072845,0.000027539218],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007311509,0.00027221223,0.09337929,0.000009976371,0.00024450835,0.0005916302,0.00007115805,0.00037619623,0.9020426,0.000016950247,0.0022651125,0.00065721263],"study_design_scores_gemma":[0.002601106,0.00017328812,0.8264533,0.00028471457,0.0002230182,0.00017904662,0.000034054094,0.00013089848,0.1360798,0.00005462452,0.033596516,0.00018961105],"about_ca_topic_score_codex":0.015035719,"about_ca_topic_score_gemma":0.0028702938,"teacher_disagreement_score":0.76596284,"about_ca_system_score_codex":0.0002375313,"about_ca_system_score_gemma":0.00038800554,"threshold_uncertainty_score":0.99152327},"labels":[],"label_agreement":null},{"id":"W2150662349","doi":"10.1021/ja110733q","title":"Three <i>Streptococcus pneumoniae</i> Sialidases: Three Different Products","year":2011,"lang":"en","type":"article","venue":"Journal of the American Chemical Society","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":116,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"BioCryst","keywords":"Sialidase; Chemistry; Glycoconjugate; Streptococcus pneumoniae; Microbiology; Sialic acid; Pathogen; Enzyme; Anomer; Glycan; Human pathogen; Biochemistry; Virology; Antibiotics; Glycoprotein; Neuraminidase; Biology","score_opus":0.028361107632916386,"score_gpt":0.26090028590728204,"score_spread":0.23253917827436565,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150662349","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99433345,0.00006543787,0.00018685833,0.0045023733,0.00030182916,0.0002276446,0.000004520082,0.000029635223,0.00034826275],"genre_scores_gemma":[0.9966866,0.000041994095,0.00034067756,0.002178844,0.00068599987,0.000009048921,4.823771e-7,0.000024975468,0.000031396252],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986175,0.000028524577,0.00045773276,0.00018272357,0.00042307345,0.0002904664],"domain_scores_gemma":[0.9983853,0.00005676256,0.0006878854,0.00042676693,0.00023052286,0.00021272435],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015722882,0.00020020937,0.0005162993,0.000021460059,0.00011653724,0.000015015657,0.00032331276,0.00006644098,0.00003517943],"category_scores_gemma":[0.00015621299,0.00010573656,0.00084042235,0.00037730703,0.0005986808,0.0000646642,0.00011901541,0.00071382173,0.000007115138],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000407429,0.00039293733,0.19749685,0.000025526419,0.0002318114,0.0000099299505,0.00021882828,4.2439967e-7,0.7948045,0.000011150481,0.0052184546,0.0015488587],"study_design_scores_gemma":[0.0014586238,0.00094466837,0.29191747,0.0002153375,0.0007355588,0.00089116854,0.00045285717,0.000032648662,0.6931268,0.0009206415,0.008974275,0.00032994934],"about_ca_topic_score_codex":0.000021329697,"about_ca_topic_score_gemma":0.0000032525313,"teacher_disagreement_score":0.101677686,"about_ca_system_score_codex":0.00015942998,"about_ca_system_score_gemma":0.00016404131,"threshold_uncertainty_score":0.43118116},"labels":[],"label_agreement":null},{"id":"W2151280630","doi":"10.1093/cid/cir449","title":"Outpatient Antibiotic Use in the United States: Time to “Get Smarter”","year":2011,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Penicillin; Antibiotics; Streptococcus pneumoniae; Cephalosporin; Pneumococcal infections; Intensive care medicine; Outpatient clinic; Pediatrics; Internal medicine; Microbiology","score_opus":0.08426079004100535,"score_gpt":0.35070047517776287,"score_spread":0.26643968513675753,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151280630","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967171,0.000015085187,0.000040581646,0.00049092126,0.00029330494,0.00064265594,0.0000411138,0.0001562423,0.0016029762],"genre_scores_gemma":[0.9833163,0.000037914266,0.000004180448,0.01614523,0.00013825978,0.000029085078,0.000064276785,0.000020883555,0.00024386463],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983592,0.00037009196,0.00052930607,0.00029647004,0.00016767568,0.00027724518],"domain_scores_gemma":[0.9983479,0.00062064384,0.00008324077,0.0004754012,0.00011661069,0.00035619878],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002753287,0.00016553547,0.00032463597,0.00024889942,0.000103926446,0.000038183633,0.00011100581,0.000111711444,0.00033353514],"category_scores_gemma":[0.0012346128,0.00010638513,0.00021472144,0.00062142505,0.00018610971,0.00008501484,0.0000488025,0.00031261446,0.0014064078],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005263506,0.0032318747,0.9900533,0.000022658287,0.0000622284,0.00010576673,0.0003370759,0.000031294065,0.000018530585,0.000029554143,0.005226243,0.0008288234],"study_design_scores_gemma":[0.0009665659,0.0022074757,0.9706173,0.00008963878,0.00018462699,0.000011898937,0.00008358181,0.00015488909,0.000007038415,0.000098607845,0.025435548,0.00014281854],"about_ca_topic_score_codex":0.00016493944,"about_ca_topic_score_gemma":0.000070879156,"teacher_disagreement_score":0.020209305,"about_ca_system_score_codex":0.000046089073,"about_ca_system_score_gemma":0.00007839449,"threshold_uncertainty_score":0.9993711},"labels":[],"label_agreement":null},{"id":"W2152052309","doi":"10.1586/14760584.2.4.477","title":"Pharmacoeconomics of elderly vaccination against invasive pneumococcal infections: costeffectiveness analyses and implications for The Netherlands","year":2003,"lang":"en","type":"article","venue":"Expert Review of Vaccines","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Vaccination; Medicine; Pharmacoeconomics; Pneumococcal vaccination; Cost effectiveness; Vaccine efficacy; Cost-effectiveness analysis; Pneumococcal infections; Intensive care medicine; Environmental health; Immunology; Streptococcus pneumoniae; Biology; Risk analysis (engineering)","score_opus":0.0455193169373181,"score_gpt":0.4185324671585956,"score_spread":0.3730131502212775,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152052309","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6524141,0.31914285,0.009789139,0.010116585,0.0006204464,0.006095183,0.00006747367,0.00007261147,0.0016816267],"genre_scores_gemma":[0.76091844,0.23677078,0.00014136234,0.0012378905,0.000120341836,0.0007465386,0.000019337933,0.000019995556,0.000025330439],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991503,0.00010230706,0.0004306731,0.00016578964,0.000047107616,0.000103839586],"domain_scores_gemma":[0.99824387,0.0008266343,0.00025812365,0.00025453066,0.0003637114,0.000053159754],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031219973,0.00013441306,0.00043143667,0.00010222497,0.00013813056,0.000007020364,0.00006121244,0.00004892507,0.000036514084],"category_scores_gemma":[0.00066741835,0.00008496104,0.00019052593,0.00026305724,0.000027518345,0.000089107336,0.000013024684,0.00007260477,8.604836e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005589119,0.0007412304,0.10105651,0.00897758,0.0009152584,5.34769e-7,0.00029099613,0.00007740633,0.7302013,0.0014268723,0.0029923383,0.15326409],"study_design_scores_gemma":[0.00538288,0.00207103,0.5071936,0.0057367384,0.0017237792,0.00023063994,0.0003752626,0.0001629763,0.18218458,0.00044363554,0.29397276,0.00052208727],"about_ca_topic_score_codex":0.0000101904325,"about_ca_topic_score_gemma":0.000017336706,"teacher_disagreement_score":0.5480167,"about_ca_system_score_codex":0.000030916195,"about_ca_system_score_gemma":0.000114969735,"threshold_uncertainty_score":0.34646106},"labels":[],"label_agreement":null},{"id":"W2152203254","doi":"10.1093/jac/45.1.119","title":"Macrolide resistance in Belgian Streptococcus pneumoniae","year":2000,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Erythromycin; Streptococcus pneumoniae; Microbiology; Clindamycin; Biology; Streptococcaceae; Antibacterial agent; Antibiotics","score_opus":0.006609098397642889,"score_gpt":0.25784756550767224,"score_spread":0.25123846711002934,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152203254","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9816882,0.00009670886,0.000013877529,0.012302796,0.00014401985,0.00017075094,0.000004707254,0.000017309181,0.005561656],"genre_scores_gemma":[0.98963267,0.00091663736,0.00030378992,0.0061725196,0.00035224436,0.0000014354094,0.0000011170569,0.000031519052,0.00258805],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99882054,0.000041772688,0.0005678024,0.00013759361,0.00017800264,0.00025425808],"domain_scores_gemma":[0.99936503,0.000024158735,0.00019244672,0.00018129448,0.00010704488,0.00013004297],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020767454,0.00015362962,0.00040976197,0.00022610673,0.000060702878,0.000025045563,0.00011872634,0.00011645845,0.0007655166],"category_scores_gemma":[0.000014929398,0.00012551683,0.00022744677,0.00032384708,0.00007636675,0.00012675844,0.0000045647353,0.00042560545,0.000036579666],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00057199056,0.00058290496,0.043507356,0.000050657713,0.000100349236,0.00049321755,0.00052580924,0.000043908538,0.9323844,0.0000152533885,0.012097094,0.009627085],"study_design_scores_gemma":[0.008186272,0.00052483875,0.17842138,0.0007447697,0.000060772472,0.0010486685,0.00004787266,0.0000078042995,0.10354378,0.000121562865,0.706978,0.00031426136],"about_ca_topic_score_codex":0.000007277163,"about_ca_topic_score_gemma":0.00005288517,"teacher_disagreement_score":0.8288406,"about_ca_system_score_codex":0.00010874789,"about_ca_system_score_gemma":0.00018358788,"threshold_uncertainty_score":0.838187},"labels":[],"label_agreement":null},{"id":"W2153684444","doi":"10.1128/aac.47.6.1777-1783.2003","title":"Macrolide Resistance by Ribosomal Mutation in Clinical Isolates of <i>Streptococcus pneumoniae</i> from the PROTEKT 1999-2000 Study","year":2003,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":99,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"European Commission","keywords":"23S ribosomal RNA; Biology; Ribosomal RNA; Telithromycin; Genetics; Allele; Microbiology; Genotype; Streptococcus pneumoniae; Gene; Bacteria; RNA","score_opus":0.01373639024007665,"score_gpt":0.29419849308855184,"score_spread":0.28046210284847517,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153684444","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99608064,0.000077404984,0.000016258595,0.0022651595,0.00010004757,0.0010720792,0.000043885266,0.00001904952,0.00032548123],"genre_scores_gemma":[0.99416846,0.00032504988,0.000031491883,0.005050122,0.00005899396,0.00002780546,0.000012882956,0.000020761101,0.00030444958],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99872726,0.00016433526,0.0005135283,0.00029948572,0.00010492786,0.00019045382],"domain_scores_gemma":[0.99941874,0.00008321099,0.00016054485,0.00023407757,0.000042940326,0.000060511637],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024188076,0.00016143442,0.00032947262,0.00003335902,0.00010684012,0.000023501343,0.00007734117,0.000103893035,0.00007017822],"category_scores_gemma":[0.00003225902,0.00011130567,0.00009289795,0.0001810499,0.00013441844,0.000054563916,0.000011820029,0.0002233525,0.000005213248],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015235749,0.0012613718,0.9135435,0.000017063376,0.00011414769,0.000017987222,0.0008826673,0.0000012507718,0.07564591,0.0000057548255,0.007043204,0.0013147593],"study_design_scores_gemma":[0.0067490637,0.000569753,0.8540821,0.0001439043,0.00007543831,0.00001385975,0.00035115072,0.000012670923,0.021889355,0.00006489839,0.11583516,0.00021264426],"about_ca_topic_score_codex":0.00018473624,"about_ca_topic_score_gemma":0.00019166381,"teacher_disagreement_score":0.108791955,"about_ca_system_score_codex":0.000021778633,"about_ca_system_score_gemma":0.00007820562,"threshold_uncertainty_score":0.45389137},"labels":[],"label_agreement":null},{"id":"W2154052377","doi":"10.1002/ppul.22608","title":"A 4 year prospective study to determine risk factors for severe community acquired pneumonia in children in southern China","year":2012,"lang":"en","type":"article","venue":"Pediatric Pulmonology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":70,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Izaak Walton Killam Health Centre; Dalhousie University","funders":"","keywords":"Medicine; Case fatality rate; Pediatrics; Pneumonia; Prospective cohort study; Internal medicine; Epidemiology","score_opus":0.01785771078488819,"score_gpt":0.28028726565705736,"score_spread":0.2624295548721692,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154052377","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968164,0.00005531728,0.000018029205,0.00012811049,0.00018494242,0.0025208984,0.00008697317,0.00007101286,0.000118348406],"genre_scores_gemma":[0.99909717,0.000015626729,0.00003792516,0.00007441395,0.00033198652,0.00029958552,0.000015707408,0.000033837914,0.00009373634],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99839056,0.00034353763,0.00036123832,0.00024735116,0.00010268419,0.0005546138],"domain_scores_gemma":[0.9990848,0.00018701034,0.000118529715,0.00038833864,0.00003828878,0.0001830577],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048810098,0.00022061206,0.00046094932,0.0005942889,0.00015545698,0.000007962682,0.0001615342,0.00015965069,0.000021376016],"category_scores_gemma":[0.00050288765,0.00018737615,0.00008578965,0.0006203145,0.000034470653,0.0000863499,0.00011913068,0.0005068244,0.00006439552],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000117559146,0.002455665,0.98458666,0.000012699317,0.000041018608,0.000003949448,0.012227039,0.000015662628,0.0002288256,0.000002659884,0.0000145659815,0.00029368664],"study_design_scores_gemma":[0.0022006866,0.0012727225,0.99287766,0.0000039946235,0.00014550936,0.000038580638,0.0031492037,0.000011601496,0.00001569506,0.000070344344,0.000027412505,0.00018658632],"about_ca_topic_score_codex":0.0022310307,"about_ca_topic_score_gemma":0.0012319003,"teacher_disagreement_score":0.009077835,"about_ca_system_score_codex":0.00019417692,"about_ca_system_score_gemma":0.00007101069,"threshold_uncertainty_score":0.76409775},"labels":[],"label_agreement":null},{"id":"W2154386371","doi":"10.1093/cid/civ473","title":"Neurological Complications of PCR-Proven<i>M. pneumoniae</i>Infections in Children: Prodromal Illness Duration May Reflect Pathogenetic Mechanism","year":2015,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Mycoplasma pneumoniae; Medicine; Prodrome; Immunology; Respiratory tract infections; Respiratory tract; Respiratory system; Internal medicine; Pneumonia","score_opus":0.05282150992222093,"score_gpt":0.3606096591856806,"score_spread":0.30778814926345965,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154386371","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945203,0.00011966625,0.0004919584,0.0012431554,0.0005704277,0.0013057798,0.00008160162,0.00031872542,0.0013483971],"genre_scores_gemma":[0.99800354,0.00011206443,0.000020235844,0.0010612732,0.0002892833,0.00033435106,0.00008960652,0.00003894905,0.00005071261],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9969635,0.000522178,0.0012011278,0.00063327525,0.0003148088,0.0003650904],"domain_scores_gemma":[0.9977626,0.00032693933,0.0003486281,0.0006326828,0.00036005946,0.0005690407],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00045941235,0.00028568902,0.00066666515,0.00029890006,0.00020021947,0.000030217914,0.0001379564,0.0002997822,0.000036586298],"category_scores_gemma":[0.0018600427,0.00024700927,0.00038441687,0.0007790427,0.0003842109,0.00013242406,0.00009784754,0.00053491956,0.000085048545],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003902259,0.004005613,0.9888564,0.00003367592,0.00008444454,0.00002163475,0.000032204178,0.00016563483,0.003167148,0.0015047165,0.00015254859,0.0019369533],"study_design_scores_gemma":[0.0025556358,0.0033558924,0.9880499,0.00005615548,0.00032520635,0.00036514693,0.000023402736,0.00042311553,0.00014890019,0.003596806,0.0008199716,0.00027985152],"about_ca_topic_score_codex":0.000030960888,"about_ca_topic_score_gemma":0.000049903436,"teacher_disagreement_score":0.0034832356,"about_ca_system_score_codex":0.00008365593,"about_ca_system_score_gemma":0.00046587436,"threshold_uncertainty_score":0.9999982},"labels":[],"label_agreement":null},{"id":"W2154692528","doi":"10.1136/bmjopen-2012-001030","title":"The International Community-Acquired Pneumonia (CAP) Collaboration Cohort (ICCC) study: rationale, design and description of study cohorts and patients","year":2012,"lang":"en","type":"article","venue":"BMJ Open","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dalhousie University; University of Alberta","funders":"","keywords":"Medicine; Community-acquired pneumonia; Prospective cohort study; Cohort; Cohort study; Pneumonia; Physical therapy; Pediatrics; Internal medicine","score_opus":0.109760083704963,"score_gpt":0.3840234212660856,"score_spread":0.2742633375611226,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154692528","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98382676,0.000026639595,0.00009106227,0.00034085845,0.00033312646,0.014684722,0.00000924241,0.000014117694,0.0006734761],"genre_scores_gemma":[0.9980742,0.0000143722045,0.00008476235,0.00015759269,0.00005683647,0.0012720256,0.000030143214,0.00001201105,0.0002980887],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983622,0.00066653977,0.00036764465,0.00012515318,0.0003578684,0.000120633245],"domain_scores_gemma":[0.9988443,0.00020852563,0.00019348008,0.0002952337,0.00036843066,0.00009001661],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023192072,0.000111221416,0.00022618525,0.00007311557,0.00056418986,0.00015185987,0.0001479874,0.000041489933,0.000015597729],"category_scores_gemma":[0.0003113152,0.00007984334,0.00001577595,0.00016374791,0.00009125787,0.0004707391,0.00024351916,0.00010518245,0.0000035556216],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024791158,0.0017881121,0.9902274,0.000011122867,0.0002029317,0.0000011375469,0.0030307313,0.0000070490582,0.0033307886,0.000043904703,0.0005096278,0.00059929927],"study_design_scores_gemma":[0.0021420866,0.0011381058,0.98918605,0.000030911095,0.0001431953,0.000012369358,0.0058534243,0.00012632285,0.00012371644,0.000027581405,0.0011314214,0.00008482672],"about_ca_topic_score_codex":0.00016085393,"about_ca_topic_score_gemma":0.00026381054,"teacher_disagreement_score":0.014247412,"about_ca_system_score_codex":0.0000611988,"about_ca_system_score_gemma":0.00010041427,"threshold_uncertainty_score":0.43393493},"labels":[],"label_agreement":null},{"id":"W2155212103","doi":"10.1183/09031936.00109007","title":"Antibacterial class is not obviously important in outpatient pneumonia: a meta-analysis","year":2008,"lang":"en","type":"review","venue":"European Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; Toronto Western Hospital","funders":"Princess Margaret Hospital Foundation","keywords":"Medicine; Chronic cough; Bronchiectasis; Pediatrics; Chronic bronchitis; COPD; Outpatient clinic; Population; Bronchitis; Asthma; Internal medicine; Environmental health; Lung","score_opus":0.15966804351222255,"score_gpt":0.3610782759078407,"score_spread":0.20141023239561814,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155212103","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0021273093,0.99247086,0.000012955632,0.00017725462,0.0009696506,0.0010020622,0.0002062808,0.000100007244,0.0029335914],"genre_scores_gemma":[0.00048328858,0.9933444,0.000030162015,0.0036033022,0.0014633193,0.000038514252,0.0000381957,0.00026813126,0.00073068537],"study_design_codex":"meta_analysis","study_design_gemma":"not_applicable","domain_scores_codex":[0.9894707,0.0031019202,0.004227727,0.001098896,0.0011695898,0.000931122],"domain_scores_gemma":[0.99470866,0.00015869515,0.0025527598,0.0013557883,0.00034089384,0.00088323106],"candidate_categories":["metaepi_narrow","metaepi_broad","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002008555,0.0012513878,0.0073835645,0.003087214,0.00049331074,0.0002199432,0.0006283632,0.0004945986,0.0010413054],"category_scores_gemma":[0.00025397798,0.00085254066,0.010196848,0.0021980521,0.00022530658,0.0002023284,0.00021559744,0.0036745702,0.00063473335],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027427802,0.0036946365,0.006877136,0.0066346414,0.59332484,0.113680355,0.0016899605,0.00003311718,0.0006307513,0.00003110899,0.01923707,0.2538921],"study_design_scores_gemma":[0.0007173893,0.0005755362,0.0012862392,0.0005794793,0.17898165,0.0042039445,0.000011812557,0.0000014890231,0.0000033385722,6.311887e-7,0.8130684,0.000570119],"about_ca_topic_score_codex":0.000006563146,"about_ca_topic_score_gemma":0.000019019553,"teacher_disagreement_score":0.7938313,"about_ca_system_score_codex":0.0005337262,"about_ca_system_score_gemma":0.0014841235,"threshold_uncertainty_score":0.99987185},"labels":[],"label_agreement":null},{"id":"W2155299303","doi":"10.1590/s1413-86702002000200004","title":"Antimicrobial therapy for community-acquired pneumonia in adults","year":2002,"lang":"en","type":"article","venue":"The Brazilian Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Antimicrobial; Community-acquired pneumonia; Medicine; Etiology; Pneumonia; Intensive care medicine; Family medicine; Antibiotic resistance; Antimicrobial stewardship; Antibiotics; Internal medicine; Microbiology; Biology","score_opus":0.018249473053429697,"score_gpt":0.27157856146245035,"score_spread":0.25332908840902063,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155299303","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99517083,0.00074592326,0.00004295896,0.002549801,0.00041489667,0.000465171,0.00002506311,0.00003910672,0.0005462651],"genre_scores_gemma":[0.99682254,0.00064959534,0.0000068191325,0.002022967,0.0003651173,0.000017628714,0.0000028408188,0.000026972792,0.00008554493],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987749,0.0002701081,0.00046717082,0.00008804863,0.00015515022,0.00024463268],"domain_scores_gemma":[0.9987678,0.00028578527,0.00026291917,0.00028719666,0.00022609452,0.00017018322],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002820373,0.0001665504,0.0003622681,0.00025491233,0.00037911895,0.0000356277,0.00018301535,0.00006777667,0.00011087922],"category_scores_gemma":[0.00026450292,0.000106230436,0.00034851837,0.000306083,0.00018869808,0.00015116135,0.000019137433,0.0003443772,0.00001589146],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019546242,0.0080232,0.85605514,0.00038289724,0.00061635376,0.00022581528,0.0046558063,0.0003782376,0.061655045,0.00008296739,0.012302673,0.053667232],"study_design_scores_gemma":[0.019256517,0.0051430706,0.95183855,0.001103334,0.00032700782,0.0027133224,0.00066998525,0.00027104586,0.0017241469,0.0006801327,0.015881464,0.00039142906],"about_ca_topic_score_codex":0.000018187031,"about_ca_topic_score_gemma":0.000038145656,"teacher_disagreement_score":0.0957834,"about_ca_system_score_codex":0.000081671446,"about_ca_system_score_gemma":0.00008092523,"threshold_uncertainty_score":0.43319514},"labels":[],"label_agreement":null},{"id":"W2155679630","doi":"10.1139/v02-141","title":"Serological and conformational properties of <i>E. coli</i> K92 capsular polysaccharide and its <i>N</i>-propionylated derivative both illustrate that induced antibody does not recognize extended epitopes of polysialic acid: Implications for a comprehensive conjugate vaccine against groups B and C <i>N. meningitidis</i>","year":2002,"lang":"en","type":"article","venue":"Canadian Journal of Chemistry","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Epitope; Polysialic acid; Chemistry; Conjugate; Conjugate vaccine; Antibody; Conformational epitope; Antiserum; Polysaccharide; Neisseria meningitidis; Immune system; Microbiology; Antigen; Biochemistry; Bacteria; Biology; Immunology","score_opus":0.050984287372494004,"score_gpt":0.2594014783756433,"score_spread":0.20841719100314932,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155679630","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946971,0.0014757473,0.000018730405,0.0030990166,0.00003942814,0.00032457933,0.00028459475,0.0000081485805,0.00005266963],"genre_scores_gemma":[0.9985751,0.0006005863,0.00004244183,0.0006663237,0.000056761353,0.000012459646,0.000016359294,0.000012634242,0.000017369908],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989581,0.000030391036,0.00053821557,0.00015447027,0.00010654692,0.00021229096],"domain_scores_gemma":[0.9983592,0.000059388436,0.00047730884,0.00009647954,0.0005825247,0.00042510734],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000110422676,0.00017777956,0.00049300503,0.00010662667,0.00017673994,0.000027302834,0.00006816321,0.0001504295,0.000015591153],"category_scores_gemma":[0.00013580719,0.00012682332,0.00006922689,0.00011677416,0.00020754492,0.00017860872,0.000015736323,0.00021605818,1.17722315e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000092052454,0.00003084088,0.0032875838,0.0003007286,0.00018519118,0.000010971494,0.00048355287,0.0000020298128,0.99521464,0.000026565778,0.00004509699,0.00032073766],"study_design_scores_gemma":[0.0023917337,0.00026677368,0.022144105,0.00034447561,0.00017076134,0.00072346284,0.00089364854,0.00015798616,0.9724677,0.000066842076,0.0002119482,0.00016054536],"about_ca_topic_score_codex":0.00007721568,"about_ca_topic_score_gemma":0.00005568626,"teacher_disagreement_score":0.022746932,"about_ca_system_score_codex":0.000033940007,"about_ca_system_score_gemma":0.00031419375,"threshold_uncertainty_score":0.5171705},"labels":[],"label_agreement":null},{"id":"W2156056353","doi":"10.5847/wjem.j.1920-8642.2011.04.005","title":"Can we predict which patients with community-acquired pneumonia are likely to have positive blood cultures?","year":2011,"lang":"en","type":"article","venue":"World Journal of Emergency Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St Joseph's Health Centre; University of Calgary","funders":"","keywords":"Medicine; Logistic regression; Univariate analysis; Internal medicine; Pneumonia; Blood culture; Creatinine; Odds ratio; Community-acquired pneumonia; Multivariate analysis; Gastroenterology","score_opus":0.03894151370843158,"score_gpt":0.29635783617176387,"score_spread":0.2574163224633323,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156056353","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97794616,0.00048869074,0.000053255004,0.009896305,0.0018367443,0.0005807302,0.000040637202,0.00004034319,0.009117106],"genre_scores_gemma":[0.9959814,0.00031506887,0.0001118266,0.001007638,0.00075471355,0.0000132172345,0.000019527974,0.00004826447,0.0017483331],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.997314,0.00027612006,0.0010274275,0.0002019151,0.0007735955,0.0004069642],"domain_scores_gemma":[0.9960616,0.00005772629,0.00076403015,0.00045526034,0.0018617647,0.0007995862],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004781574,0.00034836272,0.00076915446,0.000681468,0.0003605251,0.000004413563,0.00029551008,0.00009177504,0.0009085702],"category_scores_gemma":[0.00034279228,0.00021286769,0.00015021848,0.0010854631,0.0001270023,0.00013915624,0.000059213642,0.00088480726,0.000010995193],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007926461,0.0019615325,0.96380544,0.00013526234,0.00097504526,0.00017846144,0.011903425,0.000008507948,0.013021088,0.000027692384,0.0067394166,0.0004514868],"study_design_scores_gemma":[0.004251276,0.008421368,0.9703028,0.0027154589,0.0013916274,0.00018672009,0.002354826,0.000001931844,0.0010109362,0.00009011919,0.00901148,0.0002614155],"about_ca_topic_score_codex":0.00023645964,"about_ca_topic_score_gemma":0.002356604,"teacher_disagreement_score":0.018035222,"about_ca_system_score_codex":0.00009131848,"about_ca_system_score_gemma":0.00014962388,"threshold_uncertainty_score":0.99482065},"labels":[],"label_agreement":null},{"id":"W2156774389","doi":"10.1185/030079904125003610","title":"Comparison of hospitalization rates in patients with community-acquired pneumonia treated with telithromycin for 5 or 7 days or clarithromycin for 10 days","year":2004,"lang":"en","type":"article","venue":"Current Medical Research and Opinion","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Zoo","funders":"","keywords":"Telithromycin; Medicine; Clarithromycin; Clinical endpoint; Internal medicine; Population; Community-acquired pneumonia; Pneumonia; Respiratory tract infections; Antibacterial agent; Randomized controlled trial; Antibiotics; Helicobacter pylori; Respiratory system","score_opus":0.14107474568794162,"score_gpt":0.4651035068709187,"score_spread":0.3240287611829771,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156774389","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99355745,0.00023708331,0.0027276257,0.00082813913,0.000099932484,0.0024145322,0.00007956488,0.000030190165,0.000025480605],"genre_scores_gemma":[0.99807036,0.0002968824,0.0001719286,0.00003191299,0.00008026759,0.00034228578,0.0009435273,0.0000280996,0.000034743683],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978814,0.00019180054,0.0004407205,0.00027177154,0.0007756595,0.00043864665],"domain_scores_gemma":[0.99791986,0.00065221085,0.000104848776,0.0002550131,0.00069310673,0.0003749689],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006975544,0.00018203689,0.00052176655,0.0003030764,0.00034452777,0.000026460284,0.00013177117,0.00017594898,0.000044594068],"category_scores_gemma":[0.0010913848,0.00010028467,0.0000368691,0.00064905774,0.00055190193,0.00012115223,0.000052890817,0.00044822288,0.0000014432179],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.014382109,0.009081226,0.9398488,0.0030916804,0.00013240655,0.0000046740556,0.0011157554,0.000030121728,0.00080938154,0.0004865848,0.00079509465,0.030222194],"study_design_scores_gemma":[0.03643993,0.05926079,0.878692,0.007273033,0.00006769292,0.000010822746,0.0013185507,0.0009875551,0.0027675394,0.0002617987,0.01257947,0.00034082436],"about_ca_topic_score_codex":0.00009883257,"about_ca_topic_score_gemma":0.0003293512,"teacher_disagreement_score":0.06115678,"about_ca_system_score_codex":0.00012903911,"about_ca_system_score_gemma":0.0007228225,"threshold_uncertainty_score":0.408949},"labels":[],"label_agreement":null},{"id":"W2157016503","doi":"10.1093/cid/ciu497","title":"Previous Antibiotic Exposure and Antimicrobial Resistance in Invasive Pneumococcal Disease: Results From Prospective Surveillance","year":2014,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":70,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Sunnybrook Health Science Centre; The Scarborough Hospital; Toronto East General Hospital; University of Toronto; University Health Network; William Osler Health System; Health Sciences Centre; HalTech; Mount Sinai Hospital","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Antibiotics; Antibiotic resistance; Odds ratio; Internal medicine; Confidence interval; Antimicrobial; Azithromycin; Broth microdilution; Prospective cohort study; Microbiology; Minimum inhibitory concentration; Biology","score_opus":0.01706244703854677,"score_gpt":0.30196214318369774,"score_spread":0.284899696145151,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157016503","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99479604,0.00068393047,0.000025555932,0.001096762,0.00052795996,0.00086981227,0.000380158,0.00023397375,0.0013857919],"genre_scores_gemma":[0.9971062,0.0008224507,0.000010300548,0.0010652394,0.0006690496,0.00003047279,0.00010648435,0.000037889553,0.00015191738],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9970908,0.00052164996,0.00090101204,0.0009129161,0.00019949417,0.00037413798],"domain_scores_gemma":[0.99646664,0.0018196076,0.00032668383,0.00059204124,0.00016746679,0.0006275399],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00038085887,0.0003053277,0.0007730005,0.00013421969,0.00018039327,0.00006492581,0.000098610435,0.00020256659,0.000015310588],"category_scores_gemma":[0.008739104,0.0002664543,0.00024372435,0.0003432417,0.00054377964,0.00013056316,0.00009291218,0.0004707758,0.000046256228],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00051531894,0.0011876103,0.99578536,0.00015547869,0.00008788179,0.00012549167,0.00005086297,0.000012586024,0.00089365186,0.00009037176,0.0005015733,0.0005938289],"study_design_scores_gemma":[0.0055494243,0.00050321233,0.99072486,0.00056391966,0.00016596534,0.000005410238,0.000010037461,0.00002925528,0.000063101725,0.0008892047,0.0011942983,0.0003013117],"about_ca_topic_score_codex":0.000039589377,"about_ca_topic_score_gemma":0.0010305503,"teacher_disagreement_score":0.008358245,"about_ca_system_score_codex":0.000088803645,"about_ca_system_score_gemma":0.0002901593,"threshold_uncertainty_score":0.9999788},"labels":[],"label_agreement":null},{"id":"W2157132415","doi":"10.5339/qfarf.2012.bmp44","title":"Pediatric pneumococcal immunization programs and associated changes in antibiotic utilization: A systematic review","year":2012,"lang":"en","type":"review","venue":"Qatar Foundation Annual Research Forum Volume 2012 Issue 1","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia, Okanagan Campus; University of British Columbia","funders":"","keywords":"Medicine; Epidemiology; Vaccination; Randomized controlled trial; Population; Antimicrobial stewardship; Immunization; Intensive care medicine; Clinical trial; Pediatrics; MEDLINE; Incidence (geometry); Systematic review; Antimicrobial; Antibiotics; Antibiotic resistance; Internal medicine; Environmental health; Immunology","score_opus":0.15366756924729327,"score_gpt":0.43911402487886714,"score_spread":0.2854464556315739,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157132415","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000041995936,0.98914975,0.000017042987,0.00096250867,0.00032157596,0.009017972,0.000056321234,0.00013066031,0.00030216726],"genre_scores_gemma":[0.0003961224,0.9897726,0.000011368816,0.00011958461,0.0003875614,0.00073497044,0.0028823533,0.000117129806,0.0055782828],"study_design_codex":"systematic_review","study_design_gemma":"not_applicable","domain_scores_codex":[0.99373615,0.0020806072,0.0013236974,0.00063557195,0.0011337061,0.0010902513],"domain_scores_gemma":[0.99673945,0.0003165761,0.00064432505,0.00077680824,0.0010828101,0.00044006057],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0042629223,0.0005417871,0.0025136555,0.0015303603,0.0004291802,0.00017345071,0.0003099876,0.00065204257,0.0004436864],"category_scores_gemma":[0.0026231213,0.0004386363,0.0002457638,0.0035340618,0.00022582186,0.00066820375,0.00027457855,0.0012893355,0.0015888949],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000005252886,0.00066379545,0.002269014,0.8349038,0.00018347069,0.00002122079,0.00019395455,5.3769025e-8,0.0000015042949,0.00006609318,0.0015428845,0.16014896],"study_design_scores_gemma":[0.00029909195,0.00039223666,0.000611585,0.20612912,0.0019736888,0.00012529826,0.00017546143,0.000028021037,1.55955e-7,0.0000047996614,0.7899074,0.0003531425],"about_ca_topic_score_codex":0.00006133837,"about_ca_topic_score_gemma":0.00024927466,"teacher_disagreement_score":0.7883645,"about_ca_system_score_codex":0.0006738364,"about_ca_system_score_gemma":0.0007888744,"threshold_uncertainty_score":0.9998065},"labels":[],"label_agreement":null},{"id":"W2157250912","doi":"10.1016/j.rmed.2011.11.017","title":"Guideline adherence and macrolides reduced mortality in outpatients with pneumonia","year":2011,"lang":"en","type":"article","venue":"Respiratory Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; University of Alberta","funders":"Alberta Heritage Foundation for Medical Research; Canadian Institutes of Health Research; Pfizer Canada; Abbott Canada; Capital Health","keywords":"Medicine; Guideline; Pneumonia; Antibiotics; Pneumonia severity index; Internal medicine; Population; Intensive care medicine; Community-acquired pneumonia; Pathology","score_opus":0.09789612387710037,"score_gpt":0.3407700282237073,"score_spread":0.2428739043466069,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157250912","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9890422,0.00043962162,0.000044417633,0.000404971,0.00017974798,0.0005206964,0.000004896035,0.000094531555,0.0092688715],"genre_scores_gemma":[0.9961133,0.000055311542,0.00014050216,0.0032671217,0.00018865729,0.000058935413,0.00000615277,0.00003288997,0.00013712309],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9979832,0.00010319958,0.0007007112,0.00046150328,0.0003862625,0.00036510068],"domain_scores_gemma":[0.99873537,0.00003961249,0.00017312134,0.0004942712,0.00019605947,0.00036158029],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005483639,0.00027442377,0.00055104034,0.00031973264,0.00009042368,0.000005431532,0.00009869694,0.0001350432,0.0002721898],"category_scores_gemma":[0.00023462159,0.00018291862,0.000038294602,0.0004687759,0.00046627157,0.00011994178,0.000043914646,0.00035483923,0.000021914866],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024666125,0.00023856225,0.89569575,0.00010667788,0.000067948604,0.000425697,0.0009702373,0.0000012915721,0.09756198,0.00011029898,0.00036251804,0.0042123725],"study_design_scores_gemma":[0.0038809744,0.0032748368,0.9759361,0.0005479329,0.00014802263,0.00013903684,0.00032759778,0.000029021823,0.0031188016,0.00009876569,0.012265507,0.00023340432],"about_ca_topic_score_codex":0.00035996022,"about_ca_topic_score_gemma":0.00028450528,"teacher_disagreement_score":0.09444318,"about_ca_system_score_codex":0.00007299402,"about_ca_system_score_gemma":0.00018276519,"threshold_uncertainty_score":0.7459205},"labels":[],"label_agreement":null},{"id":"W2157583453","doi":"10.1371/journal.pmed.1001517","title":"Serotype-Specific Changes in Invasive Pneumococcal Disease after Pneumococcal Conjugate Vaccine Introduction: A Pooled Analysis of Multiple Surveillance Sites","year":2013,"lang":"en","type":"article","venue":"PLoS Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":480,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Health Canada; Terveyden ja hyvinvoinnin laitos; Public Health Agency of Canada; GlaxoSmithKline; Sanofi Pasteur; Kaiser Permanente; Bill and Melinda Gates Foundation; Pfizer; Public Health Agency; Sanofi","keywords":"Pneumococcal conjugate vaccine; Medicine; Serotype; Poisson regression; Confidence interval; Rate ratio; Pneumococcal disease; Pediatrics; Vaccination; Streptococcus pneumoniae; Internal medicine; Immunology; Population; Biology; Antibiotics; Environmental health; Microbiology","score_opus":0.017910127714548935,"score_gpt":0.24732479142648978,"score_spread":0.22941466371194083,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157583453","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96279514,0.000832563,0.00001611303,0.034744833,0.00023968505,0.0011382104,0.0000380629,0.00008886756,0.000106499305],"genre_scores_gemma":[0.9965328,0.0005379301,0.000018502853,0.0008098362,0.0011534899,0.00045343934,0.00020708,0.00003669801,0.00025020374],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9976165,0.00017747945,0.0007181121,0.0006036544,0.00045009516,0.0004341278],"domain_scores_gemma":[0.99774677,0.0003883814,0.00022506696,0.0006922434,0.00047776802,0.00046974857],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00026371752,0.0003428757,0.0011944617,0.001154854,0.00006596946,0.000012454252,0.000132053,0.0001308104,0.0033621066],"category_scores_gemma":[0.0009282289,0.00025338182,0.00017857768,0.002059782,0.00023063552,0.00013279104,0.00006662381,0.00036837728,0.000108318076],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027597672,0.0003608417,0.5612271,0.00014741757,0.00063933694,0.000069657544,0.00025965794,0.000050519488,0.43652076,0.000008341012,0.00027729498,0.00016313871],"study_design_scores_gemma":[0.0024796918,0.00051655126,0.9883104,0.00022173129,0.001301821,0.000014765857,0.00021232992,0.0011571044,0.003737523,0.000026133699,0.0017904044,0.0002315257],"about_ca_topic_score_codex":0.000106646345,"about_ca_topic_score_gemma":0.0013433518,"teacher_disagreement_score":0.43278322,"about_ca_system_score_codex":0.000110566485,"about_ca_system_score_gemma":0.00008441463,"threshold_uncertainty_score":0.99999183},"labels":[],"label_agreement":null},{"id":"W2157733577","doi":"10.1186/1745-6215-15-257","title":"Corticosteroid treatment for community-acquired pneumonia - the STEP trial: study protocol for a randomized controlled trial","year":2014,"lang":"en","type":"article","venue":"Trials","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Medicine; Clinical endpoint; Placebo; Randomized controlled trial; Prednisone; Pneumonia; Corticosteroid; Community-acquired pneumonia; Clinical trial; Internal medicine; Multicenter trial; Intensive care medicine; Multicenter study; Alternative medicine","score_opus":0.18388891248082664,"score_gpt":0.45991940293234934,"score_spread":0.2760304904515227,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157733577","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.11143969,0.0000055374517,0.001641045,0.0014707928,0.0011005786,0.8838154,0.000022283588,0.00014206802,0.00036259426],"genre_scores_gemma":[0.10764299,0.0000013696886,0.00006206149,0.00046308714,0.0016622887,0.8888501,0.000013170721,0.000051085604,0.0012538624],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.98557717,0.0107560875,0.0026610286,0.00030104103,0.00031375067,0.0003909553],"domain_scores_gemma":[0.96926147,0.028077958,0.0012894548,0.0009357393,0.00027453,0.00016086931],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.022225723,0.00041079303,0.005257121,0.0001470646,0.0008673818,0.00012243645,0.00020451847,0.00016012513,0.00005237777],"category_scores_gemma":[0.019068183,0.00018508783,0.002185142,0.00012834734,0.0001592159,0.000054033193,0.00003126281,0.00014869933,0.00001176791],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.985472,0.0059513,0.000012271848,0.00005195549,0.0019411937,7.9298286e-7,0.0005803142,0.000002782755,0.0036336458,0.00010285907,0.00040795008,0.001842923],"study_design_scores_gemma":[0.9083469,0.043800283,0.000016468837,0.00004454525,0.003958355,0.000004449832,0.0003175849,0.00032311035,0.0002846069,0.00021349499,0.042520784,0.00016945208],"about_ca_topic_score_codex":0.00006317507,"about_ca_topic_score_gemma":0.000064783264,"teacher_disagreement_score":0.07712515,"about_ca_system_score_codex":0.00011681548,"about_ca_system_score_gemma":0.00028781843,"threshold_uncertainty_score":0.98919463},"labels":[],"label_agreement":null},{"id":"W2158075347","doi":"10.1086/313959","title":"Canadian Guidelines for the Initial Management of Community-Acquired Pneumonia: An Evidence-Based Update by the Canadian Infectious Diseases Society and the Canadian Thoracic Society","year":2000,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":666,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia; University of Alberta; University of Toronto; McMaster University","funders":"","keywords":"Medicine; Community-acquired pneumonia; Pneumonia; Intensive care medicine; Family medicine; Internal medicine","score_opus":0.12776699840975386,"score_gpt":0.4296279170816703,"score_spread":0.30186091867191644,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158075347","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.87749493,0.0047657695,0.000082687126,0.10826852,0.0009212219,0.004617022,0.0024590343,0.00023169472,0.0011591384],"genre_scores_gemma":[0.937749,0.002282921,0.00000827505,0.058492146,0.000475885,0.0005710022,0.00019644352,0.00005499829,0.00016928601],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9965188,0.0009873947,0.0009341364,0.0004030775,0.0003584869,0.0007981151],"domain_scores_gemma":[0.99371725,0.0023403333,0.00022040632,0.0011667744,0.0006805133,0.0018747424],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0018101066,0.00041161015,0.00063460576,0.0001012115,0.005984356,0.00030209773,0.00050195,0.00030689675,0.00022568113],"category_scores_gemma":[0.0008814267,0.00023378628,0.000984654,0.0005559277,0.002500778,0.00022523252,0.000054250206,0.00068371836,0.000018410099],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040856117,0.0013278555,0.6781868,0.0007816552,0.0041724946,0.000051375093,0.0010481562,0.0015876608,0.00001697968,0.0010402537,0.17635448,0.13502376],"study_design_scores_gemma":[0.007465656,0.0013614432,0.6811916,0.00060905627,0.0070171235,0.00007083836,0.0017294397,0.008105817,0.000010247265,0.0019264388,0.28961825,0.0008940258],"about_ca_topic_score_codex":0.92125714,"about_ca_topic_score_gemma":0.99222374,"teacher_disagreement_score":0.13412973,"about_ca_system_score_codex":0.00072358793,"about_ca_system_score_gemma":0.004657476,"threshold_uncertainty_score":0.9953097},"labels":[],"label_agreement":null},{"id":"W2158994176","doi":"10.1007/s00431-010-1214-7","title":"Invasive pneumococcal disease after implementation of a reduced three-dose pneumococcal conjugate vaccine program: a pediatric tertiary care center experience","year":2010,"lang":"en","type":"article","venue":"European Journal of Pediatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Pneumococcal conjugate vaccine; Medicine; Serotype; Pneumococcal disease; Vaccination; Conjugate vaccine; Virology; Pneumococcal infections; Streptococcus pneumoniae; Pediatrics; Vaccination schedule; Immunization; Immunology; Microbiology; Antibiotics; Antigen; Biology","score_opus":0.010253872309013368,"score_gpt":0.2933828553046336,"score_spread":0.2831289829956202,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158994176","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971329,0.00032509505,0.000051795214,0.0005356824,0.0010828461,0.0006704179,0.000050642768,0.000043144417,0.00010746431],"genre_scores_gemma":[0.99654126,0.00026054683,0.00037941098,0.00023679523,0.002467276,0.000025619762,0.00001801301,0.000059460395,0.000011588856],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.997518,0.00020142642,0.0011313187,0.00027939622,0.0005003563,0.00036947255],"domain_scores_gemma":[0.9971584,0.000070504226,0.0007711107,0.0003532513,0.0009566508,0.00069006486],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003724853,0.00028084594,0.00039177414,0.0004953019,0.00010698616,0.00004633259,0.00024261614,0.000056548997,0.00016408901],"category_scores_gemma":[0.00032455198,0.00022136756,0.00035724192,0.00046418005,0.00007656558,0.0002861918,0.00011543331,0.00074729684,0.000027666216],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028551603,0.0004813656,0.8992716,0.00030403017,0.000024493796,0.0014135509,0.0016997117,0.0000029796065,0.091345504,0.000002185533,0.00015183906,0.005017215],"study_design_scores_gemma":[0.003258457,0.0011153464,0.9908946,0.000040114002,0.0005830983,0.0003741081,0.00073175837,0.0000037861203,0.0012692785,0.000004961242,0.0015104327,0.000214066],"about_ca_topic_score_codex":0.0000032654393,"about_ca_topic_score_gemma":0.000021282447,"teacher_disagreement_score":0.09162298,"about_ca_system_score_codex":0.000053066145,"about_ca_system_score_gemma":0.00057150563,"threshold_uncertainty_score":0.90271074},"labels":[],"label_agreement":null},{"id":"W2159332779","doi":"10.1378/chest.117.4.1090","title":"Oral Absorption of Clarithromycin in Acute Illness and During Convalescence in Patients With Community-Acquired Pneumonia","year":2000,"lang":"en","type":"article","venue":"CHEST Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre","funders":"","keywords":"Clarithromycin; Medicine; Cmax; Convalescence; Pharmacokinetics; Gastroenterology; Internal medicine; Pneumonia; Area under the curve; Antibacterial agent; Absorption (acoustics); Antibiotics; Microbiology","score_opus":0.010614345950863848,"score_gpt":0.24674707583559002,"score_spread":0.23613272988472617,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159332779","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995683,0.000023403874,0.0000052378714,0.00013302075,0.00003540304,0.00012982274,0.0000030274143,0.000007671165,0.00009413563],"genre_scores_gemma":[0.9997221,0.0000939951,0.00004522106,0.000069373564,0.000016933467,0.0000030357373,0.0000037511816,0.000010033286,0.00003552341],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992505,0.00011471413,0.00026549553,0.00007528217,0.00013637792,0.0001576855],"domain_scores_gemma":[0.9996358,0.00001814909,0.00008182683,0.00011731295,0.000057666533,0.000089251575],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000197162,0.00009432668,0.00023482369,0.00016299852,0.00014035203,0.000014258902,0.000052636253,0.000071524526,0.00005493618],"category_scores_gemma":[0.000010017012,0.000073426294,0.000023600818,0.0002065793,0.00013233579,0.00015928388,0.000013263673,0.0004967883,0.0000025930988],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002622098,0.00037987935,0.9582855,0.00008701674,0.000022970728,0.000046695,0.00085984793,0.000041520114,0.03804372,0.0000015849023,9.968146e-7,0.0019680622],"study_design_scores_gemma":[0.0042286073,0.00036048226,0.9927234,0.0005145242,0.000031187355,0.00029329586,0.00021950474,0.000017329236,0.0014543987,0.000015469963,0.00005686925,0.00008491457],"about_ca_topic_score_codex":0.00004789561,"about_ca_topic_score_gemma":0.0001077158,"teacher_disagreement_score":0.03658932,"about_ca_system_score_codex":0.000078325684,"about_ca_system_score_gemma":0.000051671486,"threshold_uncertainty_score":0.29942372},"labels":[],"label_agreement":null},{"id":"W2159604014","doi":"10.1128/aac.47.6.1867-1874.2003","title":"Antimicrobial Resistance in Respiratory Tract <i>Streptococcus pneumoniae</i> Isolates: Results of the Canadian Respiratory Organism Susceptibility Study, 1997 to 2002","year":2003,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":162,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Mount Sinai Hospital; University of Manitoba; Health Sciences Centre","funders":"","keywords":"Gatifloxacin; Microbiology; Moxifloxacin; Trovafloxacin; Streptococcus pneumoniae; Penicillin; Levofloxacin; Ciprofloxacin; Quinupristin; Dalfopristin; Antibacterial agent; Linezolid; Trimethoprim; Antibiotics; Biology; Medicine; Vancomycin; Staphylococcus aureus; Bacteria","score_opus":0.018561845889969675,"score_gpt":0.2677002680755139,"score_spread":0.24913842218554422,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159604014","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9912215,0.000028319637,0.0000020243688,0.004278377,0.0003060108,0.0018199666,0.0001588823,0.000034681103,0.0021502585],"genre_scores_gemma":[0.97241336,0.00003210692,0.000031851414,0.026819404,0.00007876285,0.000018473742,0.000003542206,0.000054861823,0.00054762646],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9973065,0.00029267036,0.00085259695,0.00072089606,0.00023189108,0.0005954137],"domain_scores_gemma":[0.99836624,0.000046131354,0.00022541701,0.00084088073,0.00016978117,0.00035154956],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00072863925,0.0003768869,0.00057580695,0.00028083444,0.0004249604,0.00005886289,0.00025190285,0.0002598653,0.00010361593],"category_scores_gemma":[0.00014232183,0.0002958505,0.00016928215,0.000862836,0.0002502049,0.0001029966,0.00004142211,0.0004852824,0.000022466556],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016812315,0.0013889028,0.6833078,0.00008051467,0.00007174657,0.000051450206,0.0018225504,0.0000053504896,0.2716806,0.000024166378,0.0412249,0.00017388749],"study_design_scores_gemma":[0.0050402167,0.00038466678,0.68074113,0.00021193697,0.00004730007,0.0000121613275,0.0001490165,6.4669183e-7,0.024114158,0.000014422082,0.28895307,0.00033128884],"about_ca_topic_score_codex":0.0034268242,"about_ca_topic_score_gemma":0.15873562,"teacher_disagreement_score":0.24772815,"about_ca_system_score_codex":0.0002656875,"about_ca_system_score_gemma":0.0007840658,"threshold_uncertainty_score":0.99994934},"labels":[],"label_agreement":null},{"id":"W2159606687","doi":"10.1093/cid/ciq076","title":"Oxygen Saturations Less than 92% Are Associated with Major Adverse Events in Outpatients with Pneumonia: A Population-Based Cohort Study","year":2010,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":143,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Heritage Foundation for Medical Research","keywords":"Medicine; Confidence interval; Odds ratio; Hypoxemia; Oxygen saturation; Internal medicine; Pneumonia; Oxygen therapy; Population; Cohort; Prospective cohort study; Surgery; Anesthesia; Oxygen","score_opus":0.021813717104468104,"score_gpt":0.3241081754938126,"score_spread":0.3022944583893445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159606687","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99645305,0.0000045219035,0.00002082897,0.00025684954,0.00046759818,0.0022736883,0.00008830079,0.000271216,0.00016397124],"genre_scores_gemma":[0.99849457,0.000001819186,0.0000037829413,0.00053135306,0.00014466696,0.00045571517,0.00022170944,0.000051981966,0.00009439073],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99758327,0.00030642163,0.0007022793,0.00058721076,0.0004751435,0.00034565796],"domain_scores_gemma":[0.997787,0.00047249914,0.00040915702,0.00054651254,0.00034199664,0.0004428237],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028897767,0.0003130348,0.00067797466,0.00025981723,0.00033891134,0.000018154096,0.000101805155,0.0002193737,0.00004724165],"category_scores_gemma":[0.0013092868,0.00022403448,0.00020137044,0.0006798845,0.00015700479,0.00016252657,0.000031535154,0.00076344336,0.000027260518],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016515236,0.009299926,0.9896189,0.000022208118,0.0003560556,0.00009011873,0.000033028726,0.00028828383,0.000026960552,0.0000050965605,0.000016128484,0.00007812579],"study_design_scores_gemma":[0.0071545998,0.0019995454,0.98912257,0.00020387408,0.00086898304,0.000005853402,0.00014152839,0.00016360568,0.000001750901,0.000024659208,0.000025212872,0.00028784116],"about_ca_topic_score_codex":0.000385587,"about_ca_topic_score_gemma":0.03014609,"teacher_disagreement_score":0.029760504,"about_ca_system_score_codex":0.00015598563,"about_ca_system_score_gemma":0.00041153256,"threshold_uncertainty_score":0.9875512},"labels":[],"label_agreement":null},{"id":"W2159627759","doi":"10.1093/jac/45.5.655","title":"Antibiotic resistance in respiratory tract isolates of Haemophilus influenzae and Moraxella catarrhalis collected from across Canada in 1997-1998","year":2000,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Health Sciences Centre","funders":"University of Alberta; London Health Sciences Centre; Calgary Laboratory Services; Hamilton Health Sciences","keywords":"Moraxella catarrhalis; Microbiology; Haemophilus influenzae; Ampicillin; Cefotaxime; Moraxella (Branhamella) catarrhalis; Cefixime; Amp resistance; Moraxella; Streptococcus pneumoniae; Ciprofloxacin; Levofloxacin; Medicine; Trimethoprim; Antibiotics; Biology; Cephalosporin; Bacteria","score_opus":0.010269334001776102,"score_gpt":0.25831935835467285,"score_spread":0.24805002435289675,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159627759","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969445,0.00084133976,0.0000010100179,0.0017192306,0.00010235038,0.00017148034,0.000106901025,0.000005797545,0.000107377906],"genre_scores_gemma":[0.99539566,0.000770454,0.000094509865,0.0035395552,0.000107527994,3.5746072e-7,0.000004201536,0.000025497533,0.000062243926],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99845195,0.000075862474,0.00084478577,0.0001836501,0.00017429843,0.000269439],"domain_scores_gemma":[0.99918854,0.000092055816,0.00032810407,0.00017679665,0.000096344644,0.00011814856],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023574787,0.00018793599,0.0006625387,0.00014889629,0.00006203342,0.000020982574,0.000114826886,0.00015620301,0.000050731807],"category_scores_gemma":[0.000038933835,0.00016524915,0.00009223316,0.00052644365,0.00013512085,0.0001257202,0.000007949199,0.00042586584,9.008734e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014713048,0.0005554895,0.30617613,0.00011299646,0.00011042057,0.0004990539,0.0015476857,0.000111035406,0.6835401,7.308974e-7,0.004733393,0.0011416866],"study_design_scores_gemma":[0.008969058,0.00033311293,0.8075557,0.0010829116,0.000039315164,0.00018946499,0.00011369018,0.000018594008,0.13075499,0.00002243686,0.050661575,0.0002591513],"about_ca_topic_score_codex":0.04059737,"about_ca_topic_score_gemma":0.29212055,"teacher_disagreement_score":0.5527851,"about_ca_system_score_codex":0.00020307867,"about_ca_system_score_gemma":0.00067567494,"threshold_uncertainty_score":0.96579134},"labels":[],"label_agreement":null},{"id":"W2160797498","doi":"10.1017/s0950268810000919","title":"Increased risk of invasive pneumococcal disease in haematological and solid-organ malignancies","year":2010,"lang":"en","type":"article","venue":"Epidemiology and Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":99,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; University of Calgary; University of Alberta","funders":"","keywords":"Medicine; Population; Internal medicine; Epidemiology; Multiple myeloma; Cancer registry; Pneumococcal conjugate vaccine; Surgery; Streptococcus pneumoniae","score_opus":0.024203856279582516,"score_gpt":0.3131543020877933,"score_spread":0.28895044580821083,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160797498","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982361,0.00011263827,0.00009006467,0.00093313254,0.00017688102,0.00021052668,0.000006977024,0.000034572546,0.00019906036],"genre_scores_gemma":[0.99857634,0.00079367467,0.000047965237,0.0004564478,0.000070306865,0.000029542405,0.000007781488,0.0000056377003,0.000012296333],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988389,0.00037623642,0.00035089254,0.00022408858,0.000031939275,0.00017793568],"domain_scores_gemma":[0.9985398,0.0009456732,0.00014743235,0.00013137588,0.000045789922,0.00018994401],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00082019897,0.00011367139,0.00044169335,0.0001555064,0.0001090753,0.0000021375129,0.000016974676,0.00024138541,0.000041929045],"category_scores_gemma":[0.0071499096,0.00008384049,0.000058056383,0.00011355992,0.00047146768,0.00006974979,0.000032425185,0.00045580373,0.0000051602537],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006700514,0.00010321173,0.92124647,0.00006972178,0.000021902291,0.000015127465,0.000042470223,0.0000066960015,0.0767559,0.0013535807,0.000024210527,0.0002937291],"study_design_scores_gemma":[0.0006016344,0.00025753284,0.9928257,0.000049017293,0.000086801796,0.00019453376,0.000010831857,0.00019757215,0.0015504435,0.00371193,0.00043685996,0.00007716064],"about_ca_topic_score_codex":0.0003918068,"about_ca_topic_score_gemma":0.0004809068,"teacher_disagreement_score":0.07520546,"about_ca_system_score_codex":0.000009442475,"about_ca_system_score_gemma":0.000062169216,"threshold_uncertainty_score":0.85596263},"labels":[],"label_agreement":null},{"id":"W2160853655","doi":"10.1128/aac.45.7.2147-2150.2001","title":"Macrolide-Resistant <i>Streptococcus pneumoniae</i> in Canada during 1998–1999: Prevalence of <i>mef</i> (A) and <i>erm</i> (B) and Susceptibilities to Ketolides","year":2001,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":83,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Health Sciences Centre","funders":"Bayer Canada; SmithKline Beecham Pharma; Bristol-Myers Squibb; Abbott Laboratories","keywords":"Telithromycin; Streptococcus pneumoniae; Ketolide; Microbiology; Erythromycin; Biology; Antibiotics","score_opus":0.0069730440326956555,"score_gpt":0.2278106748755361,"score_spread":0.22083763084284044,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160853655","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964676,0.00012208258,0.0000015125084,0.0025826814,0.000065233246,0.00045491033,0.000053747717,0.000015220912,0.00023703244],"genre_scores_gemma":[0.9885783,0.0042467746,0.000020402847,0.006742495,0.00005193867,0.000011895906,0.0000022355707,0.000022686083,0.00032325098],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99880594,0.000027411077,0.00034530924,0.0003558954,0.00013079062,0.00033466952],"domain_scores_gemma":[0.9994656,0.000032766504,0.00007922074,0.00018893855,0.000042228963,0.00019125226],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008044166,0.00021339481,0.00037200697,0.000097640084,0.0001051604,0.000022599537,0.00005824972,0.00006281828,0.000022765398],"category_scores_gemma":[0.000012458658,0.00018645833,0.000038492133,0.00017143638,0.00014352001,0.00007551291,0.000048054124,0.000119661614,7.045288e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011958263,0.000059638325,0.6590153,0.0004968043,0.000026014022,0.000050052113,0.00048645315,0.0000033008196,0.3386045,0.0000027343688,0.00046735757,0.0006682656],"study_design_scores_gemma":[0.0020087936,0.00018207007,0.94589037,0.00043187558,0.00003799347,0.00019433194,0.0002627655,0.000009856799,0.0343082,0.0000102058775,0.01642514,0.00023842981],"about_ca_topic_score_codex":0.11833536,"about_ca_topic_score_gemma":0.22211167,"teacher_disagreement_score":0.3042963,"about_ca_system_score_codex":0.00010699149,"about_ca_system_score_gemma":0.00023035948,"threshold_uncertainty_score":0.8875357},"labels":[],"label_agreement":null},{"id":"W2160985858","doi":"10.1099/mic.0.042184-0","title":"Transcriptional regulation, occurrence and putative role of the Pht family of Streptococcus pneumoniae","year":2010,"lang":"en","type":"article","venue":"Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Medicago (Canada)","funders":"","keywords":"Streptococcus pneumoniae; Biology; Bacteria; Mutant; Microbiology; Gene; Streptococcaceae; Genetics","score_opus":0.006002071842780319,"score_gpt":0.2312509897721183,"score_spread":0.225248917929338,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160985858","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984755,0.00009077653,0.00002382274,0.00040269364,0.00019062131,0.00019586961,0.00022560291,0.000008068174,0.00038705123],"genre_scores_gemma":[0.99973,0.0000056004033,0.000027958924,0.00012461332,0.000022916785,0.000008185719,0.000020991929,0.0000029347086,0.00005683249],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995434,0.00004128472,0.0001847753,0.000116955634,0.000028004379,0.00008557643],"domain_scores_gemma":[0.9995915,0.000042998465,0.00009194711,0.00013244739,0.00011525292,0.00002583846],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006932318,0.000066415414,0.00015592133,0.000047840527,0.00004866589,0.0000012989696,0.000051511724,0.00009519281,0.00004086835],"category_scores_gemma":[0.00003162398,0.000042976197,0.000058191297,0.00009714521,0.00045874514,0.00001955654,0.00001700253,0.00016964172,0.000002597024],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000007998173,0.000051980413,0.10705686,0.000014134535,0.000022203732,1.8119698e-7,0.00024163445,0.0000028469651,0.89120865,0.0006360976,0.00004968948,0.00070772],"study_design_scores_gemma":[0.00042656407,0.00013376276,0.78059745,0.000017308925,0.000040453666,0.000067766625,0.000110627414,0.000011378785,0.20123729,0.00033312925,0.01697656,0.00004771146],"about_ca_topic_score_codex":0.000009448166,"about_ca_topic_score_gemma":0.000016343683,"teacher_disagreement_score":0.6899713,"about_ca_system_score_codex":0.000005084701,"about_ca_system_score_gemma":0.00008012686,"threshold_uncertainty_score":0.17525184},"labels":[],"label_agreement":null},{"id":"W2161648360","doi":"10.1086/315760","title":"Prospective Study of Prognostic Factors in Community‐Acquired Bacteremic Pneumococcal Disease in 5 Countries","year":2000,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":183,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Medicine; Pneumonia; Case fatality rate; Meningitis; Prospective cohort study; Odds ratio; Multivariate analysis; Bacteremia; Streptococcus pneumoniae; Internal medicine; Logistic regression; Disease; Pediatrics; Epidemiology","score_opus":0.012199055051847487,"score_gpt":0.2746900450919779,"score_spread":0.26249099004013043,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161648360","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985189,0.00022187979,0.0000012037485,0.0000946689,0.00009652564,0.0008737769,0.000016837896,0.000023353281,0.00015287609],"genre_scores_gemma":[0.9996716,0.00014695963,1.6695955e-7,0.00006677273,0.0000553562,0.00001923493,0.0000020666287,0.000018041583,0.000019841425],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99804103,0.00070081756,0.0006560461,0.00008525193,0.0003088992,0.00020792308],"domain_scores_gemma":[0.9985186,0.00055559987,0.0002647821,0.00027858833,0.00018789544,0.00019457187],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003611501,0.00018340039,0.00047828123,0.00037813757,0.00016040713,0.000017218634,0.00015568396,0.000043875512,0.00014917247],"category_scores_gemma":[0.00043131356,0.000113812355,0.00013105058,0.0005017726,0.0002042745,0.00018756464,0.000028243261,0.00046332082,0.0000050618287],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00082332187,0.006229837,0.9860507,0.000086927306,0.00011609583,0.00008883975,0.0046062027,0.0009006945,0.0009410411,0.0000040207738,0.0000065179056,0.00014578956],"study_design_scores_gemma":[0.003382709,0.002492439,0.9903837,0.00036218416,0.00043909613,0.000067767716,0.002460255,0.000018621971,0.000061158236,0.00020736868,0.000022832359,0.000101902035],"about_ca_topic_score_codex":0.00027048297,"about_ca_topic_score_gemma":0.00045706372,"teacher_disagreement_score":0.004332954,"about_ca_system_score_codex":0.00020787935,"about_ca_system_score_gemma":0.00031005783,"threshold_uncertainty_score":0.46411332},"labels":[],"label_agreement":null},{"id":"W2161758173","doi":"10.1086/591409","title":"Is Activity against “Atypical” Pathogens Necessary in the Treatment Protocols for Community‐Acquired Pneumonia? Issues with Combination Therapy","year":2008,"lang":"en","type":"review","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Pfizer","keywords":"Mycoplasma pneumoniae; Medicine; Community-acquired pneumonia; Legionella; Legionella pneumophila; Pneumonia; Intensive care medicine; Atypical pneumonia; Antibiotics; Empiric therapy; Erythromycin; Clinical trial; Immunology; Internal medicine; Microbiology; Pathology; Biology; Bacteria","score_opus":0.209718278404238,"score_gpt":0.4836559283000157,"score_spread":0.2739376498957777,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161758173","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.07309693,0.8222821,0.000039859107,0.0012573383,0.00042130784,0.100897156,0.00080992753,0.000525569,0.0006698433],"genre_scores_gemma":[0.0049275,0.939852,0.0000028931274,0.0016283254,0.00044089265,0.05259903,0.00031432256,0.00009418278,0.00014083592],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99531007,0.0023189264,0.0010476074,0.0005757995,0.00032465765,0.00042295508],"domain_scores_gemma":[0.9945846,0.0031095082,0.00061207404,0.0012113521,0.00021446524,0.00026797925],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00042815675,0.00070599833,0.002532199,0.00024892838,0.000730633,0.00008331766,0.00029250083,0.0005664572,0.000024123032],"category_scores_gemma":[0.00035500745,0.00037762313,0.0016061645,0.0005553525,0.00053122226,0.0001198154,0.00003755964,0.00078918796,0.000042632706],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027719952,0.02850712,0.046667945,0.003371559,0.0009356627,0.000105818675,0.00023935255,0.0000018554573,0.0000034012155,0.000018315872,0.0012515924,0.91862017],"study_design_scores_gemma":[0.0044679353,0.010262235,0.058100652,0.003760691,0.0009679253,0.00006132054,0.000033235086,0.0000108575705,0.0000017225481,0.000075941,0.9218369,0.00042059],"about_ca_topic_score_codex":0.000031338845,"about_ca_topic_score_gemma":0.00006826504,"teacher_disagreement_score":0.9205853,"about_ca_system_score_codex":0.00030626138,"about_ca_system_score_gemma":0.0008573861,"threshold_uncertainty_score":0.99986756},"labels":[],"label_agreement":null},{"id":"W2161938356","doi":"10.1086/591537","title":"A Randomized, Double‐Blind, Placebo‐Controlled Trial to Evaluate the Prime‐Boost Strategy for Pneumococcal Vaccination in Adult Liver Transplant Recipients","year":2008,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University; University of Toronto; Kingston Health Sciences Centre; Toronto General Hospital; University of Alberta","funders":"Canadian Institutes of Health Research; Association of Medical Microbiology and Infectious Disease Canada; University of Alabama at Birmingham","keywords":"Medicine; Vaccination; Placebo; Placebo-controlled study; Double blind; Pneumococcal vaccination; Randomized controlled trial; Internal medicine; Immunology; Streptococcus pneumoniae; Alternative medicine; Antibiotics; Pathology; Microbiology","score_opus":0.0976132738705861,"score_gpt":0.40462757535052307,"score_spread":0.30701430147993697,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161938356","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97734964,0.00010873594,0.00051552604,0.0010178973,0.0013513693,0.018393971,0.00003812785,0.00015071536,0.0010740425],"genre_scores_gemma":[0.98965013,0.0005022094,0.0000032191804,0.0012535912,0.0009984935,0.0071522486,0.000047026526,0.000038418984,0.0003546328],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.996105,0.0009724335,0.0015181695,0.0005743267,0.0003891158,0.00044090944],"domain_scores_gemma":[0.99481297,0.003613734,0.00023290273,0.0004091936,0.0004651886,0.00046604115],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001620926,0.00033461727,0.001448039,0.00027382048,0.00039375003,0.000044318236,0.00014814615,0.0002692524,0.0001228942],"category_scores_gemma":[0.0035936933,0.00020501962,0.0011993707,0.00038174397,0.00021062234,0.000128602,0.000030213523,0.0004600316,0.000096813535],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.96581745,0.0031199097,0.028171893,0.000033076325,0.0004267289,0.00004529577,0.00014956045,0.00028116364,0.0000695637,0.0001637316,0.00025568745,0.0014659179],"study_design_scores_gemma":[0.9319082,0.0026059672,0.061442085,0.00009619546,0.0013032116,0.000033036013,0.000015730802,0.0019098452,0.000028121909,0.00015173393,0.0002692888,0.00023659946],"about_ca_topic_score_codex":0.00004210077,"about_ca_topic_score_gemma":0.00019853603,"teacher_disagreement_score":0.033909287,"about_ca_system_score_codex":0.00013168994,"about_ca_system_score_gemma":0.0005699705,"threshold_uncertainty_score":0.83604574},"labels":[],"label_agreement":null},{"id":"W2162377507","doi":"10.1086/321849","title":"Antimicrobial Drug Use and Resistance among Respiratory Pathogens in the Community","year":2001,"lang":"en","type":"review","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital; University Health Network","funders":"","keywords":"Medicine; Intensive care medicine; Antibiotic resistance; Drug resistance; Antimicrobial; Respiratory tract infections; Organism; Resistance (ecology); Antibiotics; Antimicrobial drug; Respiratory system; Microbiology; Biology; Internal medicine; Ecology","score_opus":0.13570564080949488,"score_gpt":0.41231502937024983,"score_spread":0.27660938856075495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162377507","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.120226905,0.87602615,0.0000023365085,0.00008996848,0.0005181567,0.0016382908,0.00024574003,0.00018045859,0.0010719704],"genre_scores_gemma":[0.0068168556,0.98928183,0.0000015018817,0.002771065,0.0005834297,0.00017622451,0.00008382627,0.00006753988,0.00021775225],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9929846,0.004503737,0.0013948827,0.0005042242,0.00021840377,0.00039414316],"domain_scores_gemma":[0.99338394,0.004449537,0.0004855701,0.001195608,0.000120526325,0.00036481908],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.001451172,0.00049893244,0.001989101,0.00028434762,0.0005602697,0.00015514977,0.00026173893,0.0005288527,0.00002195617],"category_scores_gemma":[0.003354494,0.00032579564,0.0009871041,0.00079713046,0.0010521429,0.00016458814,0.00015634217,0.0027650385,0.00003802134],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022987553,0.003498006,0.86434436,0.0097480705,0.0003441227,0.00086796837,0.00011028483,4.21746e-7,7.702156e-7,0.00006823282,0.013767981,0.10722682],"study_design_scores_gemma":[0.000609708,0.00012077923,0.23150264,0.006144923,0.0017253299,0.00005232938,0.000029011762,1.8068754e-7,2.337213e-8,0.000046244193,0.7594892,0.00027962573],"about_ca_topic_score_codex":0.000074147916,"about_ca_topic_score_gemma":0.0014954683,"teacher_disagreement_score":0.7457212,"about_ca_system_score_codex":0.00011730828,"about_ca_system_score_gemma":0.0004778661,"threshold_uncertainty_score":0.9999194},"labels":[],"label_agreement":null},{"id":"W2162431276","doi":"10.1186/1471-2164-12-512","title":"Whole genome analysis of linezolid resistance in Streptococcus pneumoniae reveals resistance and compensatory mutations","year":2011,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":81,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval","funders":"Institute of Infection and Immunity; Canadian Institutes of Health Research; McGill University","keywords":"Biology; 23S ribosomal RNA; Genetics; Mutant; Mutation; Streptococcus pneumoniae; Linezolid; Gene; Genome; RNA; Bacteria","score_opus":0.035627552270653846,"score_gpt":0.27303090602754837,"score_spread":0.23740335375689453,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162431276","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99393237,0.00065439485,0.000244783,0.00009157772,0.000044039476,0.00039135444,0.00015962549,0.00002924834,0.004452585],"genre_scores_gemma":[0.99670637,0.00006655885,0.001697094,0.00011675956,0.000031282096,0.00003929318,0.00004163373,0.000020664998,0.0012803612],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99871266,0.00007503283,0.0005563368,0.00031273076,0.00012382898,0.00021941264],"domain_scores_gemma":[0.99898267,0.00008703052,0.00021934664,0.00045649704,0.00012244565,0.00013203619],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024172122,0.00015285058,0.0005111627,0.0005494126,0.00008358919,0.000009061663,0.000094335985,0.0001030027,0.000048692666],"category_scores_gemma":[0.000074963806,0.00015330155,0.00013975428,0.0008085708,0.00017019962,0.000057138885,0.000036998124,0.00016329142,0.000010838904],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008297883,0.0002244872,0.6754493,0.00018891241,0.00034263657,0.000028608307,0.0025846264,0.00019403434,0.32000232,0.000834891,0.000034266224,0.000032925604],"study_design_scores_gemma":[0.0005936472,0.00004833265,0.9912647,0.000047734506,0.0006035459,0.0000019168147,0.0003628495,0.00007439935,0.0006616732,0.0003696625,0.005820168,0.00015135812],"about_ca_topic_score_codex":0.000023510316,"about_ca_topic_score_gemma":0.006688946,"teacher_disagreement_score":0.31934065,"about_ca_system_score_codex":0.00011824446,"about_ca_system_score_gemma":0.00017117184,"threshold_uncertainty_score":0.62514555},"labels":[],"label_agreement":null},{"id":"W2162469807","doi":"10.1016/j.idc.2012.11.005","title":"Does Empiric Therapy for Atypical Pathogens Improve Outcomes for Patients with CAP?","year":2013,"lang":"en","type":"review","venue":"Infectious Disease Clinics of North America","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Medicine; Empiric therapy; Intensive care medicine; Community-acquired pneumonia; Empiric treatment; Pneumonia; Terminology; Atypical pneumonia; Pathology; Internal medicine; Antibiotics; Alternative medicine","score_opus":0.028494956989804268,"score_gpt":0.35538777752898987,"score_spread":0.3268928205391856,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162469807","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.14298145,0.7879291,0.0017226945,0.0003313925,0.004783647,0.042933628,0.018608706,0.0006356869,0.00007368257],"genre_scores_gemma":[0.0033256032,0.98860013,0.00019792219,0.0010323023,0.0004780632,0.004409333,0.0014886841,0.00022435811,0.00024362798],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9971366,0.00010102767,0.0012143183,0.000736251,0.00030598434,0.00050580926],"domain_scores_gemma":[0.9952019,0.001247095,0.0012265858,0.0008479928,0.0008616255,0.0006148085],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00009056536,0.0007011646,0.0026882093,0.0002952659,0.00020459727,0.00002803594,0.00018737624,0.0002658141,0.000034844277],"category_scores_gemma":[0.00075980584,0.00034819436,0.002051475,0.0003542959,0.00030576624,0.00008231597,0.000045843582,0.00036385405,0.000029606177],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020407661,0.0017826699,0.371613,0.005272242,0.00093929295,0.0000027275094,0.0000097014245,0.0000011954135,7.280753e-8,0.0000013048287,0.00021756261,0.61995614],"study_design_scores_gemma":[0.0028174752,0.0040165163,0.08738507,0.0008447771,0.003620062,0.0000015940011,0.0000031387503,0.0000074897175,6.5826136e-8,0.000033205404,0.90076995,0.0005006473],"about_ca_topic_score_codex":0.000009655491,"about_ca_topic_score_gemma":0.000017670396,"teacher_disagreement_score":0.9005524,"about_ca_system_score_codex":0.00010551812,"about_ca_system_score_gemma":0.0011872707,"threshold_uncertainty_score":0.999897},"labels":[],"label_agreement":null},{"id":"W2162496090","doi":"10.1586/14787210.2013.814831","title":"<i>Streptococcus pneumoniae</i>infection: a Canadian perspective","year":2013,"lang":"en","type":"review","venue":"Expert Review of Anti-infective Therapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; Calgary Laboratory Services; Public Health Ontario; University of Calgary; Alberta Children's Hospital; Toronto Public Health; Mount Sinai Hospital","funders":"","keywords":"Streptococcus pneumoniae; Serotype; Meningitis; Carriage; Medicine; Pneumonia; Pneumococcal infections; Outbreak; Incidence (geometry); Otitis; Bacteremia; Antibiotic resistance; Immunology; Vaccination; Conjugate vaccine; Virology; Antibiotics; Microbiology; Pediatrics; Biology; Internal medicine","score_opus":0.05141665248247395,"score_gpt":0.39906798753907036,"score_spread":0.3476513350565964,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162496090","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000034002453,0.97602934,0.000014648152,0.00072596234,0.0009587774,0.007656634,0.00008616321,0.00018254574,0.014311928],"genre_scores_gemma":[0.000044055494,0.9932504,0.000021992419,0.0030939397,0.00097001414,0.0020857386,0.00009693686,0.00020487934,0.00023199013],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99539685,0.0006900514,0.001481455,0.0010911734,0.00051623094,0.00082426256],"domain_scores_gemma":[0.99536467,0.00021900439,0.0009928453,0.0013640185,0.0012796449,0.0007798282],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["metaepi_narrow","insufficient_payload"],"category_scores_codex":[0.00049211323,0.0012759872,0.005583781,0.0009617559,0.00031952982,0.000048917267,0.0003193264,0.00069072726,0.0023205574],"category_scores_gemma":[0.00025769774,0.00089290336,0.0030931542,0.0016186903,0.00039855042,0.000227731,0.00006373527,0.0012064973,0.0008245343],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000040298128,0.0007020378,0.000555619,0.047664743,0.002760511,0.00010154216,0.0002755975,8.5336154e-8,0.00022198835,0.00045867971,0.015225154,0.93203],"study_design_scores_gemma":[0.00046919312,0.0006886479,0.00030439306,0.09288635,0.00073939696,0.0005351064,0.000024775252,2.6457795e-7,0.000047082747,0.00002598737,0.9035535,0.000725312],"about_ca_topic_score_codex":0.02565433,"about_ca_topic_score_gemma":0.0010510104,"teacher_disagreement_score":0.9313047,"about_ca_system_score_codex":0.001489438,"about_ca_system_score_gemma":0.0036255096,"threshold_uncertainty_score":0.9999992},"labels":[],"label_agreement":null},{"id":"W2162566321","doi":"10.1016/j.ijantimicag.2004.08.006","title":"Community-acquired pneumonia: new management strategies for evolving pathogens and antimicrobial susceptibilities","year":2004,"lang":"en","type":"review","venue":"International Journal of Antimicrobial Agents","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont; Mount Sinai Hospital; University of Toronto","funders":"","keywords":"Streptococcus pneumoniae; Community-acquired pneumonia; Antimicrobial; Pneumonia; Intensive care medicine; Medicine; Cephalosporin; Antibiotic resistance; Ceftriaxone; Bacterial pneumonia; Microbiology; Antibiotics; Internal medicine; Biology","score_opus":0.05908175635591971,"score_gpt":0.35984624265983506,"score_spread":0.30076448630391533,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162566321","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.02802749,0.9354541,0.006449013,0.0034776647,0.017239358,0.005586991,0.0016208946,0.00021262364,0.001931884],"genre_scores_gemma":[0.0064072986,0.989337,0.0013789237,0.00061900495,0.0012217158,0.000009103579,0.00015708899,0.000092007715,0.00077783794],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99758315,0.00016075697,0.001291977,0.00026208314,0.00037864986,0.0003233892],"domain_scores_gemma":[0.9978176,0.00011187175,0.0009867408,0.0002562108,0.000606965,0.00022061644],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00040739664,0.00047717552,0.0014084514,0.0007679948,0.00025183253,0.0003056859,0.00053540623,0.0002867743,0.000055343833],"category_scores_gemma":[0.00007336159,0.00039420268,0.001012777,0.00015499003,0.00017640286,0.00034390698,0.00022668566,0.0006072384,0.000012965822],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008242815,0.0042726747,0.0004604705,0.09268899,0.023349015,0.0038492314,0.004156996,0.00020578034,0.019941892,0.0015933195,0.06526567,0.78339165],"study_design_scores_gemma":[0.0035195283,0.0005647342,0.00030638662,0.04740485,0.0033087826,0.007164141,0.0004332576,0.0000028966797,0.00006832052,0.0002922178,0.9363933,0.0005415456],"about_ca_topic_score_codex":0.000045520697,"about_ca_topic_score_gemma":0.00001566455,"teacher_disagreement_score":0.87112767,"about_ca_system_score_codex":0.0004678055,"about_ca_system_score_gemma":0.0011584214,"threshold_uncertainty_score":0.999851},"labels":[],"label_agreement":null},{"id":"W2162620521","doi":"10.5546/aap.2014.352","title":"Diecinueve años de vigilancia de enfermedad invasiva neumocócica en un hospital pediátrico de Mendoza, Argentina","year":2014,"lang":"es","type":"article","venue":"Archivos Argentinos de Pediatria","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Humber River Regional Hospital","funders":"","keywords":"Medicine; Meningitis; Ceftriaxone; Case fatality rate; Penicillin; Pneumonia; Streptococcus pneumoniae; Serotype; Pediatrics; Effusion; Antibiotics; Surgery; Internal medicine; Epidemiology; Immunology; Microbiology","score_opus":0.005733259081298683,"score_gpt":0.2516628677483116,"score_spread":0.2459296086670129,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162620521","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9817562,0.00086637604,0.0042951405,0.002876088,0.0020265847,0.0014266218,0.00023280016,0.00041642858,0.006103732],"genre_scores_gemma":[0.9800136,0.0036535917,0.0012061464,0.0020795618,0.011460721,0.00027689093,0.000117995696,0.00024546057,0.0009460369],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99148405,0.0016900168,0.0014035625,0.0012427813,0.00082543254,0.0033541878],"domain_scores_gemma":[0.99398893,0.0016924974,0.00072552345,0.0012472348,0.00020620404,0.0021395958],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0022644035,0.0010523272,0.0012422834,0.0007657206,0.0008750902,0.00026432113,0.0009256066,0.00068761,0.0007373346],"category_scores_gemma":[0.0039033317,0.0010623831,0.00092241727,0.0007884321,0.00031373408,0.00024755034,0.0005094632,0.001953727,0.0011283758],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001680925,0.001396288,0.8955887,0.00063755043,0.00054013456,0.00047175403,0.0033988487,0.00006457434,0.08474065,0.0027655775,0.0063633528,0.003864452],"study_design_scores_gemma":[0.0050578807,0.0016066685,0.87310845,0.00025903236,0.0026718553,0.0006620952,0.0002927182,0.0017705542,0.009228695,0.0035591028,0.10038267,0.0014002731],"about_ca_topic_score_codex":0.0001921175,"about_ca_topic_score_gemma":0.000037911177,"teacher_disagreement_score":0.094019316,"about_ca_system_score_codex":0.0006760082,"about_ca_system_score_gemma":0.0022601003,"threshold_uncertainty_score":0.99964935},"labels":[],"label_agreement":null},{"id":"W2162905114","doi":"10.2105/ajph.90.2.223","title":"Mortality from invasive pneumococcal pneumonia in the era of antibiotic resistance, 1995-1997","year":2000,"lang":"en","type":"article","venue":"American Journal of Public Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":596,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumococcal pneumonia; Pneumonia; Cefotaxime; Streptococcus pneumoniae; Penicillin; Pneumococcal infections; Mortality rate; Internal medicine; Univariate analysis; Pediatrics; Antibiotics; Multivariate analysis; Intensive care medicine; Microbiology; Biology","score_opus":0.03725507445745265,"score_gpt":0.3274911193329959,"score_spread":0.2902360448755433,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162905114","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95991665,0.00024923848,0.000029982864,0.03830043,0.00010548656,0.00020346566,0.000039369228,0.000009739238,0.001145638],"genre_scores_gemma":[0.99306506,0.0008892825,0.00013362059,0.0056348313,0.0002208765,0.0000020587906,0.000007629113,0.000014595939,0.00003204629],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9969994,0.00085767626,0.0010265898,0.00017568358,0.00052922615,0.000411446],"domain_scores_gemma":[0.9979174,0.00034749723,0.0007942742,0.00038026,0.00016705591,0.0003934779],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018043744,0.00015249863,0.00075337844,0.00020700008,0.00010548894,0.000025211133,0.00026091424,0.00004714495,0.00013547446],"category_scores_gemma":[0.00026720765,0.00009939139,0.00019322912,0.0010460078,0.00045317967,0.00016694797,0.000012379988,0.0008467386,0.0000101923915],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013000742,0.001683161,0.8564944,0.00013441313,0.00032357717,0.0003641387,0.0059585655,0.000020969432,0.009942359,0.00022680669,0.0011559171,0.123565674],"study_design_scores_gemma":[0.0007209414,0.0012752814,0.9723177,0.00024995257,0.000034855875,0.00019368995,0.0019352519,0.000004798591,0.00004848336,0.00008072021,0.023054434,0.00008392109],"about_ca_topic_score_codex":0.0011646462,"about_ca_topic_score_gemma":0.0009329654,"teacher_disagreement_score":0.12348175,"about_ca_system_score_codex":0.0001891337,"about_ca_system_score_gemma":0.002193162,"threshold_uncertainty_score":0.40530634},"labels":[],"label_agreement":null},{"id":"W2162918165","doi":"10.1128/iai.74.2.1171-1180.2006","title":"Mn <sup>2+</sup> -Dependent Regulation of Multiple Genes in <i>Streptococcus pneumoniae</i> through PsaR and the Resultant Impact on Virulence","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":133,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Virulence; Biology; Microbiology; Streptococcus pneumoniae; Mutant; Response regulator; Wild type; Gene; Genetics; Antibiotics","score_opus":0.013998609249130248,"score_gpt":0.2740989652498409,"score_spread":0.26010035600071063,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162918165","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970104,0.00022097875,0.000044838347,0.00034659953,0.00006963402,0.000491037,0.000022916483,0.000039492985,0.0017540856],"genre_scores_gemma":[0.99918425,0.0005076877,0.000005160973,0.00010723085,0.000047517326,0.000032340453,0.000013867396,0.000010157664,0.000091767106],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99892825,0.00024323084,0.00036154478,0.00016855131,0.00014961045,0.00014883275],"domain_scores_gemma":[0.99923974,0.0002302074,0.00013615566,0.0002753447,0.00008075686,0.00003779126],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040531225,0.00015209822,0.000262308,0.00011455031,0.00022836507,0.000022781664,0.000034097633,0.00010711554,0.000018430592],"category_scores_gemma":[0.00013445196,0.00009516701,0.00008440677,0.0002593876,0.00026841293,0.00014569816,0.000035112385,0.00029963034,0.000003887992],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044916593,0.00053268456,0.81806874,0.00007323159,0.000058405723,0.000004202794,0.0008592392,0.0057418696,0.16788933,0.00066307175,0.00006578677,0.0055942987],"study_design_scores_gemma":[0.003953234,0.0004232789,0.97419655,0.000108951,0.000045556135,0.00008065735,0.00014707689,0.0031118903,0.015389694,0.000704021,0.0017254114,0.00011369127],"about_ca_topic_score_codex":0.0045178887,"about_ca_topic_score_gemma":0.00024090658,"teacher_disagreement_score":0.15612783,"about_ca_system_score_codex":0.000064179265,"about_ca_system_score_gemma":0.000040722585,"threshold_uncertainty_score":0.68297267},"labels":[],"label_agreement":null},{"id":"W2163311612","doi":"10.1183/09031936.00213211","title":"Effects of cigarette smoke condensate on pneumococcal biofilm formation and pneumolysin","year":2012,"lang":"en","type":"article","venue":"European Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Pneumolysin; Biofilm; Microbiology; Streptococcus pneumoniae; Extracellular; Virulence; Chemistry; Toxin; Bacteria; Streptococcaceae; Biology; Antibiotics; Biochemistry; Gene","score_opus":0.026121623805239753,"score_gpt":0.2726798880578284,"score_spread":0.24655826425258864,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163311612","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99160624,0.00065127295,0.00007309037,0.0002134324,0.0005148979,0.00022913242,0.0000033380118,0.000049177437,0.006659414],"genre_scores_gemma":[0.9968671,0.000062260464,0.0000141986275,0.0022064392,0.00070156885,0.000003002669,0.0000012738275,0.000042433945,0.00010171076],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99810183,0.0005383265,0.0005062442,0.0001493609,0.00034268864,0.00036154187],"domain_scores_gemma":[0.99876744,0.00011696557,0.00031278786,0.00021279827,0.00012182771,0.0004681793],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009681848,0.00020904039,0.00030775534,0.0003465838,0.00025044585,0.00003886726,0.000083464976,0.00007433972,0.00003949009],"category_scores_gemma":[0.00020722853,0.00016036426,0.0001502317,0.00017323959,0.0001386459,0.00029996916,0.000044134023,0.0006289149,0.00007656252],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009549602,0.0002837327,0.039910708,0.00017415134,0.00010514343,0.00027534153,0.00041392626,0.000004421658,0.94823503,0.0001528651,0.00055386825,0.009795293],"study_design_scores_gemma":[0.0020625745,0.0012132889,0.8315016,0.00033734122,0.00019920105,0.0015080732,0.000063563246,0.000009686525,0.1057974,0.0000092775745,0.057091933,0.00020606696],"about_ca_topic_score_codex":3.8044993e-7,"about_ca_topic_score_gemma":1.478356e-7,"teacher_disagreement_score":0.8424376,"about_ca_system_score_codex":0.000062414816,"about_ca_system_score_gemma":0.00004994931,"threshold_uncertainty_score":0.65394646},"labels":[],"label_agreement":null},{"id":"W2163423447","doi":"10.1128/aac.44.12.3395-3401.2000","title":"Two New Mechanisms of Macrolide Resistance in Clinical Strains of <i>Streptococcus pneumoniae</i> from Eastern Europe and North America","year":2000,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":255,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Pfizer","keywords":"23S ribosomal RNA; Biology; Lincosamides; Microbiology; Ketolide; Ribosomal RNA; Streptococcus pneumoniae; Telithromycin; Genetics; Gene; Erythromycin; Antibiotics; Ribosome","score_opus":0.018789644069260758,"score_gpt":0.2863808391584133,"score_spread":0.2675911950891525,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163423447","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971162,0.00003448218,0.00006734916,0.0015870555,0.000045045334,0.00023245701,0.000067132714,0.000013732389,0.0008365573],"genre_scores_gemma":[0.9899667,0.0027527844,0.00032965472,0.005967771,0.00007391667,0.0000016205864,0.000014833486,0.000021873697,0.0008708278],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989393,0.000045369496,0.00048368258,0.00027313762,0.00009283479,0.00016567239],"domain_scores_gemma":[0.99948925,0.000023561624,0.0001420004,0.0001923465,0.000032690656,0.000120143566],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000055691547,0.00014874386,0.00043116522,0.000041456573,0.000031807027,0.0000099429235,0.0000662486,0.00006486613,0.00022552256],"category_scores_gemma":[0.000006173096,0.0001266316,0.00007805825,0.00017100698,0.00016504477,0.000043232587,0.00001649863,0.0001440538,0.000005875767],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003427624,0.00064376515,0.74335605,0.00007100244,0.00016536115,0.000052223237,0.0008484596,0.0000063125717,0.18689896,0.0000218656,0.0019030683,0.065690175],"study_design_scores_gemma":[0.0057114935,0.0003630576,0.93434143,0.00024853935,0.000068277164,0.000008529611,0.000039541286,0.00003189453,0.0069332044,0.00012537834,0.05193118,0.00019750102],"about_ca_topic_score_codex":0.00026155173,"about_ca_topic_score_gemma":0.00032579966,"teacher_disagreement_score":0.19098537,"about_ca_system_score_codex":0.000005595523,"about_ca_system_score_gemma":0.00006100748,"threshold_uncertainty_score":0.51638865},"labels":[],"label_agreement":null},{"id":"W2163444349","doi":"10.1128/aac.47.2.804-808.2003","title":"Molecular Epidemiology of Penicillin-Resistant and Ciprofloxacin-Resistant <i>Streptococcus pneumoniae</i> in Canada","year":2003,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Health Sciences Centre","funders":"","keywords":"Ciprofloxacin; Penicillin; Streptococcus pneumoniae; Microbiology; Serotype; Streptococcaceae; Biology; Antibiotic resistance; Pneumococcal infections; Antibacterial agent; Antibiotics; Virology","score_opus":0.015935966869222138,"score_gpt":0.26077179496408703,"score_spread":0.2448358280948649,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163444349","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99542683,0.0001979483,0.000015181454,0.0033910547,0.00008289873,0.00033994523,0.00002101493,0.000009100231,0.000516035],"genre_scores_gemma":[0.98450947,0.0008550539,0.000048857484,0.014476511,0.000013791998,0.000008435699,0.0000054012116,0.000020493548,0.000061984814],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998736,0.000099791294,0.00045298034,0.00031090924,0.00008810449,0.00031220674],"domain_scores_gemma":[0.9994121,0.000062796025,0.00013019776,0.00019988861,0.000057623427,0.0001373988],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018837725,0.00019340307,0.00052280974,0.00007928153,0.000063322244,0.0000040583222,0.00004702441,0.000093955605,0.00004817738],"category_scores_gemma":[0.00005639164,0.00016019198,0.00006522005,0.0001527561,0.00012241556,0.000026347823,0.000015224437,0.00015869802,7.556423e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006594821,0.00009558883,0.5630043,0.000081062244,0.000063021536,0.00006618066,0.000060957052,0.000009128878,0.43503833,0.00021834859,0.0008526883,0.0004443979],"study_design_scores_gemma":[0.0039741932,0.0003295183,0.85274535,0.00022085705,0.00007665199,0.000058153262,0.00015823785,0.000041464064,0.0804235,0.0001238113,0.0614921,0.00035617326],"about_ca_topic_score_codex":0.061220508,"about_ca_topic_score_gemma":0.07141756,"teacher_disagreement_score":0.35461482,"about_ca_system_score_codex":0.00008589412,"about_ca_system_score_gemma":0.0003987619,"threshold_uncertainty_score":0.94552666},"labels":[],"label_agreement":null},{"id":"W2163723567","doi":"10.1371/journal.pone.0035061","title":"Streptococcus pneumoniae Carriage in the Gaza Strip","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Ontario","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Carriage; Serotype; Streptococcus pneumoniae; Medicine; Penicillin; Microbiology; Antibiotics; Pediatrics; Virology; Biology","score_opus":0.0833581479668811,"score_gpt":0.2774243430971082,"score_spread":0.19406619513022708,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163723567","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9845788,0.00015571505,0.000002863724,0.0019199448,0.00007011815,0.0005182058,0.00000849898,0.000052252493,0.012693642],"genre_scores_gemma":[0.9978671,0.00002726527,0.000013580532,0.0011188614,0.00044352698,0.0001167998,0.0000062196846,0.0000131207435,0.00039353143],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99907804,0.00007750465,0.00016699954,0.00010925319,0.0002693794,0.00029883982],"domain_scores_gemma":[0.9994165,0.00007789079,0.000037202568,0.00032389376,0.000032554894,0.000111991874],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023842456,0.000098423916,0.00018454724,0.00008723501,0.00007511509,0.0000122619385,0.00008051974,0.00007328591,0.00015464507],"category_scores_gemma":[0.00011193318,0.00006365773,0.00005460602,0.00023607511,0.000041432235,0.00008383832,0.000019409477,0.00030509604,0.00022417253],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000057192797,0.0027104735,0.735387,0.000056959776,0.00008162289,0.000019978483,0.000822527,6.12507e-7,0.26016065,0.0001638607,0.00027699507,0.0003135682],"study_design_scores_gemma":[0.0008954021,0.00025679905,0.97513336,0.00016129597,0.00026120257,0.000019377196,0.00054415193,0.000028240564,0.0135079585,0.000040624418,0.009005386,0.000146189],"about_ca_topic_score_codex":0.000015529435,"about_ca_topic_score_gemma":0.00002126256,"teacher_disagreement_score":0.2466527,"about_ca_system_score_codex":0.000046805464,"about_ca_system_score_gemma":0.000040810635,"threshold_uncertainty_score":0.28813592},"labels":[],"label_agreement":null},{"id":"W2163857344","doi":"10.1186/1471-2318-10-44","title":"Predictors of pneumococcal vaccination among older adults with pneumonia: findings from the Community Acquired Pneumonia Impact Study","year":2010,"lang":"en","type":"article","venue":"BMC Geriatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Western University; McMaster University; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Community-acquired pneumonia; Pneumonia; Vaccination; Pneumococcal polysaccharide vaccine; Pneumococcal pneumonia; Pneumococcal vaccine; Incidence (geometry); Streptococcus pneumoniae; Pediatrics; Internal medicine; Gerontology; Pneumococcal disease; Immunology","score_opus":0.011061004585438584,"score_gpt":0.2650166135910421,"score_spread":0.25395560900560354,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163857344","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968021,0.00002198931,0.000069582326,0.00013682827,0.000648915,0.0019100738,0.00009007055,0.00015593578,0.00016451452],"genre_scores_gemma":[0.9992722,0.000010652793,0.000053594173,0.00004773205,0.0003389289,0.00010811319,0.00006138918,0.000058887646,0.000048452395],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.997675,0.00038530197,0.0006067952,0.0003538468,0.00058481237,0.00039425102],"domain_scores_gemma":[0.99715334,0.00071451935,0.00035504144,0.0011380828,0.00038701278,0.00025197514],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00072208804,0.00037416938,0.0005497462,0.00022771755,0.0005688663,0.000065031134,0.00040680487,0.00027925134,0.00013229203],"category_scores_gemma":[0.00046934173,0.00022494697,0.0002397146,0.00091643987,0.00015533048,0.000237214,0.0001466708,0.0010435291,0.00001560532],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020978962,0.001420462,0.93888575,0.000052630992,0.00018151729,0.000010154048,0.004469424,0.000028180579,0.054482725,0.0000037694458,0.00007050218,0.00018508075],"study_design_scores_gemma":[0.003487273,0.0014578665,0.9904411,0.000063367625,0.00054604816,0.000037654696,0.0025487323,0.00016956587,0.00093972904,0.000009906233,0.00006745913,0.00023129772],"about_ca_topic_score_codex":0.0014928576,"about_ca_topic_score_gemma":0.00358301,"teacher_disagreement_score":0.053542994,"about_ca_system_score_codex":0.00009472395,"about_ca_system_score_gemma":0.00031032015,"threshold_uncertainty_score":0.91730714},"labels":[],"label_agreement":null},{"id":"W2163864665","doi":"10.1086/432017","title":"Pneumococcal Serotypes in the Elderly","year":2005,"lang":"en","type":"letter","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Alberta Children's Hospital; University of Calgary","funders":"","keywords":"Medicine; Serotype; Streptococcus pneumoniae; Virology; Pneumococcal infections; Microbiology; Antibiotics","score_opus":0.045354882359514195,"score_gpt":0.3722166473246713,"score_spread":0.3268617649651571,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163864665","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.20295028,0.00066902227,0.0000091835345,0.77947456,0.0019250482,0.0015032486,0.00010007819,0.00042261122,0.012945953],"genre_scores_gemma":[0.1941051,0.00040997655,0.0000010419307,0.7863749,0.017315501,0.00027811356,0.00019723139,0.000071778544,0.0012463315],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9967572,0.0006723371,0.0009792564,0.00063300395,0.0004263411,0.00053183886],"domain_scores_gemma":[0.99700886,0.0015734273,0.00023483,0.0008688138,0.000117988144,0.00019609819],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0003670841,0.00042866453,0.00090066786,0.00025630544,0.00018144348,0.00008857865,0.00027938597,0.0012138482,0.00038651258],"category_scores_gemma":[0.0009322612,0.0002750942,0.0009246325,0.00040430174,0.0004312882,0.00008338671,0.000058866004,0.0041891593,0.0007517665],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011758545,0.0010394836,0.30292407,0.00015899204,0.00016181919,0.0013131778,0.000020862062,0.0000051457955,0.0000080094715,0.000014417138,0.6860237,0.008318567],"study_design_scores_gemma":[0.00081169914,0.0009975493,0.3146614,0.00013250632,0.00045651305,0.00009486655,0.000009232027,0.0000056664235,4.2095567e-7,0.00019501195,0.68241096,0.00022415088],"about_ca_topic_score_codex":0.000019836762,"about_ca_topic_score_gemma":0.00007177919,"teacher_disagreement_score":0.015390453,"about_ca_system_score_codex":0.00010753207,"about_ca_system_score_gemma":0.00044502245,"threshold_uncertainty_score":0.99997014},"labels":[],"label_agreement":null},{"id":"W2164258738","doi":"10.1111/dom.12431","title":"Dipeptidyl peptidase‐4 inhibitors and the risk of community‐acquired pneumonia in patients with type 2 diabetes","year":2015,"lang":"en","type":"article","venue":"Diabetes Obesity and Metabolism","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Jewish General Hospital","funders":"Canadian Institutes of Health Research; Société Francophone du Diabète","keywords":"Medicine; Community-acquired pneumonia; Pneumonia; Odds ratio; Internal medicine; Diabetes mellitus; Dipeptidyl peptidase-4; Incidence (geometry); Cohort study; Cohort; Logistic regression; Type 2 diabetes; Confidence interval; Intensive care medicine; Endocrinology","score_opus":0.00890503614945085,"score_gpt":0.2122461691177736,"score_spread":0.20334113296832276,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164258738","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978767,0.0011174141,4.838722e-7,0.00018652562,0.00013446673,0.0004159559,0.000024125458,0.000025710211,0.00021862982],"genre_scores_gemma":[0.99933666,0.00013556873,0.000021844156,0.000374585,0.000051499777,0.000016772205,0.000017027856,0.000015591417,0.000030430252],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986926,0.00045348646,0.00025081463,0.00013664836,0.00021708508,0.00024940804],"domain_scores_gemma":[0.9989563,0.00020770585,0.00014073508,0.00031196643,0.0001992726,0.00018398602],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007603312,0.00018084614,0.00053114793,0.00015057466,0.0001927015,0.000022070366,0.00007804461,0.000097867836,0.0000033975125],"category_scores_gemma":[0.00034956308,0.000105445935,0.000051613966,0.0003299162,0.00059789367,0.00013531589,0.00009945009,0.0003235824,0.000003121467],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000077843426,0.00034640922,0.99564373,0.00006062123,0.000107900574,4.0238666e-7,0.001423657,0.0000042315173,0.0010937091,0.00008236844,0.000046488152,0.0011126278],"study_design_scores_gemma":[0.005834361,0.0003031613,0.9902242,0.0000920865,0.00032994332,4.1362716e-7,0.00026035123,0.000029461542,0.001071522,0.00027134578,0.0014592272,0.00012392792],"about_ca_topic_score_codex":0.000120127756,"about_ca_topic_score_gemma":0.00004639822,"teacher_disagreement_score":0.005756518,"about_ca_system_score_codex":0.000013322497,"about_ca_system_score_gemma":0.000047633464,"threshold_uncertainty_score":0.42999604},"labels":[],"label_agreement":null},{"id":"W2164281017","doi":"10.1016/j.ijantimicag.2009.02.002","title":"Association between fluoroquinolone usage and a dramatic rise in ciprofloxacin-resistant Streptococcus pneumoniae in Canada, 1997–2006","year":2009,"lang":"en","type":"article","venue":"International Journal of Antimicrobial Agents","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":74,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Sciences Centre; University of Manitoba","funders":"Ontario Ministry of Health and Long-Term Care; Bristol-Myers Squibb Canada; Bristol-Myers Squibb","keywords":"Ciprofloxacin; Streptococcus pneumoniae; Medicine; Medical prescription; Population; Internal medicine; Microbiology; Environmental health; Pharmacology; Antibiotics; Biology","score_opus":0.01142522792016576,"score_gpt":0.26685896926535163,"score_spread":0.25543374134518587,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164281017","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.990231,0.00003686568,0.000010427247,0.008936274,0.0003926975,0.00018372976,0.00007248599,0.0000050932813,0.00013147063],"genre_scores_gemma":[0.9983369,0.00008927092,0.00003150297,0.0012190617,0.00020178544,0.0000012898569,0.00001127361,0.000008180304,0.00010072604],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983558,0.000077280485,0.00074782537,0.00013712702,0.0004614185,0.00022054753],"domain_scores_gemma":[0.99904287,0.000063103325,0.00044672636,0.000072980125,0.00026164117,0.000112661866],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002981918,0.00013391992,0.0003524092,0.0004436054,0.000033210454,0.00004001006,0.00014740205,0.000083904975,0.000029449811],"category_scores_gemma":[0.00017994473,0.00012176603,0.00007825702,0.00018845004,0.000018353545,0.0001693705,0.000026475194,0.00037958307,0.0000042257925],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000079597616,0.00020609375,0.88022375,0.00001526178,0.00016355513,0.00077857473,0.00017134777,0.000096129,0.113217466,0.0000028359307,0.0022754697,0.0027699226],"study_design_scores_gemma":[0.002294661,0.0001519559,0.9917221,0.00047067468,0.00006422335,0.000061808896,0.000041790085,0.00006807628,0.0027822843,0.000033328462,0.0022012144,0.00010786079],"about_ca_topic_score_codex":0.02132705,"about_ca_topic_score_gemma":0.07382379,"teacher_disagreement_score":0.11149838,"about_ca_system_score_codex":0.0014258304,"about_ca_system_score_gemma":0.00059928076,"threshold_uncertainty_score":0.98519003},"labels":[],"label_agreement":null},{"id":"W2164397628","doi":"10.1016/s0732-8893(02)00450-9","title":"Implications of TeqCES: efficacy and safety of gatifloxacin in community-acquired pneumonia","year":2002,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Gatifloxacin; Pneumonia; Medicine; Intensive care medicine; Community-acquired pneumonia; Coronavirus disease 2019 (COVID-19); Internal medicine; Microbiology; Biology; Antibiotics","score_opus":0.013810651969500964,"score_gpt":0.25597452605723164,"score_spread":0.24216387408773069,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164397628","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966736,0.0011036485,0.000021874757,0.000625781,0.00004807052,0.00042537967,0.00013583529,0.000025870211,0.0009399827],"genre_scores_gemma":[0.9981694,0.0013104512,0.000005959477,0.00039533142,0.000013377676,0.000034636378,0.00004400471,0.000008892524,0.000017946943],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99911875,0.00020210019,0.00035238825,0.00015326931,0.000020754387,0.00015275642],"domain_scores_gemma":[0.99824846,0.0011770384,0.000109422144,0.00025935916,0.00006503068,0.00014070196],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001276732,0.00012573239,0.00032678878,0.00018146007,0.00014301222,0.00000336143,0.000043956403,0.00009194812,0.00007825732],"category_scores_gemma":[0.0010000688,0.00011100263,0.00004845162,0.000206865,0.0005223177,0.00003872733,0.000049027618,0.00018314076,0.0000045352995],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055636327,0.0012186229,0.8362507,0.00024381037,0.00006003048,0.000007007067,0.00046771546,0.000013937012,0.15797792,0.00041222078,0.00009321351,0.003199151],"study_design_scores_gemma":[0.0020188154,0.0004463038,0.99494636,0.00020176914,0.00014874343,0.000083953535,0.000042500913,0.000016474183,0.0006296391,0.00025232154,0.001109268,0.000103878316],"about_ca_topic_score_codex":0.000054624645,"about_ca_topic_score_gemma":0.00007425314,"teacher_disagreement_score":0.1586956,"about_ca_system_score_codex":0.000020243058,"about_ca_system_score_gemma":0.00003427852,"threshold_uncertainty_score":0.45265558},"labels":[],"label_agreement":null},{"id":"W2164435406","doi":"10.1128/jcm.01781-07","title":"In Vitro Bactericidal Activity of <i>Streptococcus pneumoniae</i> and Bactericidal Susceptibility of <i>Staphylococcus aureus</i> Strains Isolated from Cocolonized versus Noncocolonized Children","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Streptococcus pneumoniae; Staphylococcus aureus; Microbiology; In vitro; Biology; Micrococcaceae; Streptococcaceae; Bacteria; Antibacterial agent; Antibiotics","score_opus":0.02527648302218895,"score_gpt":0.3492525389291944,"score_spread":0.32397605590700546,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164435406","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970817,0.00008179809,0.000111706395,0.0006729152,0.00095051044,0.00076716486,0.00025914784,0.000013376183,0.000061696446],"genre_scores_gemma":[0.9988425,0.00009078323,0.0003056568,0.00034157274,0.0003609729,0.000003899241,0.000023365914,0.000022812208,0.000008457378],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9955023,0.00060249877,0.0029058899,0.00040721736,0.00012856763,0.00045353797],"domain_scores_gemma":[0.99475884,0.0018801719,0.002216011,0.0003832836,0.00044662695,0.00031507047],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0021505272,0.0003142516,0.002205059,0.00029428818,0.000046682282,0.000007757548,0.00023520448,0.0007313201,0.0001016947],"category_scores_gemma":[0.0009743646,0.00024885833,0.00062258926,0.00038587663,0.0008752703,0.00014396223,0.000118345306,0.0013342433,0.000002852815],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0112035,0.0013351316,0.2972404,0.000027291846,0.00036349072,0.00005696853,0.00007077587,0.0000015132758,0.68786776,8.604371e-7,0.000044887554,0.0017874008],"study_design_scores_gemma":[0.017461983,0.0050623813,0.7852355,0.00008362658,0.00027854863,0.00011464674,0.000038745322,0.0000063978305,0.19065432,0.000014723391,0.0008697305,0.00017938117],"about_ca_topic_score_codex":0.00012109007,"about_ca_topic_score_gemma":0.0002778061,"teacher_disagreement_score":0.49721345,"about_ca_system_score_codex":0.00009444566,"about_ca_system_score_gemma":0.00051006954,"threshold_uncertainty_score":0.99999636},"labels":[],"label_agreement":null},{"id":"W2164530414","doi":"10.1128/aac.45.1.252-262.2001","title":"Kinetic Study of the Inflammatory Response in <i>Streptococcus pneumoniae</i> Experimental Pneumonia Treated with the Ketolide HMR 3004","year":2001,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval","funders":"","keywords":"Streptococcus pneumoniae; Pneumonia; Pneumococcal pneumonia; Ketolide; Antibiotics; Sepsis; Microbiology; Inflammation; Immunology; Pneumococcal infections; Bacterial pneumonia; Biology; Medicine; Internal medicine","score_opus":0.009950367387311825,"score_gpt":0.2532292101578995,"score_spread":0.24327884277058767,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164530414","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943116,0.000016690674,6.8703434e-7,0.0042567644,0.000048175818,0.0011668733,0.000003654704,0.000028769637,0.00016680059],"genre_scores_gemma":[0.9955462,0.000093135604,0.0000014054539,0.0038413873,0.000044232173,0.00004728065,0.0000012622779,0.00003190605,0.00039318757],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988401,0.00016585729,0.0002933441,0.00027150544,0.00018169018,0.00024749024],"domain_scores_gemma":[0.99932086,0.000049356124,0.00012886286,0.00039291836,0.000042522064,0.00006547914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014119854,0.00022724338,0.00029560836,0.000087957764,0.00018680307,0.000026134545,0.00014464445,0.000075320706,0.000034768487],"category_scores_gemma":[0.00000760911,0.00011715799,0.00007861006,0.00037745762,0.00021629652,0.000051437968,0.00004176785,0.00021122654,0.0000031299962],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007946908,0.00091480854,0.5658433,0.000006723885,0.0000672176,0.000054848788,0.0014329153,0.00001969302,0.4303299,8.459983e-7,0.0003250276,0.00021007027],"study_design_scores_gemma":[0.0051291236,0.0012031675,0.9398224,0.000116976924,0.000046800968,0.0001554813,0.0009976211,0.000014955251,0.040689785,6.683427e-7,0.011674747,0.00014827473],"about_ca_topic_score_codex":0.000109987166,"about_ca_topic_score_gemma":0.00010426313,"teacher_disagreement_score":0.38964012,"about_ca_system_score_codex":0.000046494224,"about_ca_system_score_gemma":0.00006202248,"threshold_uncertainty_score":0.47775644},"labels":[],"label_agreement":null},{"id":"W2165582330","doi":"10.1128/aac.49.3.1257-1261.2005","title":"Molecular Epidemiology and Prevalence of Macrolide Efflux Genes <i>mef</i> (A) and <i>mef</i> (E) in <i>Streptococcus pneumoniae</i> Obtained in Canada from 1997 to 2002","year":2005,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Canada; University of Manitoba; Manitoba Health; Health Sciences Centre","funders":"","keywords":"Streptococcus pneumoniae; Genotyping; Microbiology; Biology; Molecular epidemiology; Serotype; Penicillin; Restriction fragment length polymorphism; Genotype; Antibacterial agent; Pulsed-field gel electrophoresis; Gene; Genetics; Virology; Antibiotics","score_opus":0.0103184182712728,"score_gpt":0.25749751825878825,"score_spread":0.24717909998751544,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165582330","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9889743,0.00046564444,0.000017554483,0.0097925905,0.00005647219,0.0004899052,0.000105390485,0.000010802363,0.000087366556],"genre_scores_gemma":[0.96247876,0.004095281,0.00016843168,0.033070914,0.000058736296,0.000017754188,0.000008494068,0.000022643295,0.000078968995],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985549,0.000086518405,0.00048155928,0.00043239575,0.00008668212,0.00035794533],"domain_scores_gemma":[0.99937755,0.00009749012,0.000105009654,0.00019974809,0.000030613544,0.00018959376],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016149788,0.00022951409,0.0005501441,0.00010508185,0.000046013953,0.000008132554,0.00007462951,0.000112278205,0.00004985652],"category_scores_gemma":[0.000029804753,0.00020617033,0.000040512346,0.00017164626,0.00011127368,0.000055868753,0.000049230475,0.00016307498,0.000001696241],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005332301,0.000089796784,0.7525617,0.00010503431,0.00003377512,0.000030104084,0.0001789293,0.000057945334,0.23705833,0.000004070308,0.002077476,0.0077495514],"study_design_scores_gemma":[0.003464657,0.00015926917,0.8915519,0.00030556408,0.000047313257,0.00006188248,0.000043439635,0.00022944497,0.058942914,0.000020933534,0.044870548,0.00030211033],"about_ca_topic_score_codex":0.070719376,"about_ca_topic_score_gemma":0.107736625,"teacher_disagreement_score":0.17811541,"about_ca_system_score_codex":0.00008080152,"about_ca_system_score_gemma":0.00016620604,"threshold_uncertainty_score":0.9354688},"labels":[],"label_agreement":null},{"id":"W2166319786","doi":"10.1093/infdis/jis307","title":"Nontypeable Pneumococcal Isolates Among Navajo and White Mountain Apache Communities: Are These Really a Cause of Invasive Disease?","year":2012,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"St. George's, University of London; U.S. Public Health Service; National Institute on Minority Health and Health Disparities; Centers for Disease Control and Prevention; National Institutes of Health; Canadian Institutes of Health Research; Royal Society; Imperial College London; Wellcome Trust; National Institute of General Medical Sciences; Thrasher Research Fund; GlaxoSmithKline; Johns Hopkins University; Bill and Melinda Gates Foundation; Pfizer; Sanofi; Foundation for the National Institutes of Health","keywords":"Navajo; Disease; Pneumococcal disease; White (mutation); Medicine; Biology; Streptococcus pneumoniae; Geography; Microbiology; Pathology; Antibiotics","score_opus":0.016930158272426325,"score_gpt":0.2605226400879623,"score_spread":0.24359248181553594,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166319786","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99659544,0.0018621492,0.000029457646,0.0003959593,0.00014976697,0.0002709382,0.000037911588,0.000030973802,0.0006274299],"genre_scores_gemma":[0.9980357,0.0012026867,0.0000020634254,0.00032363134,0.0002950322,0.000009849379,0.0000037712914,0.00002758385,0.00009964925],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99861693,0.00037109482,0.00043840025,0.00006214681,0.00023248397,0.00027893568],"domain_scores_gemma":[0.99774045,0.00053153996,0.0005503476,0.0003286338,0.00035241683,0.0004966325],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042146415,0.0001983314,0.0004436651,0.00021238599,0.00023291644,0.000027911097,0.00013128704,0.00006615083,0.00007286312],"category_scores_gemma":[0.00045088428,0.00011974745,0.00018994315,0.00020941153,0.00042595173,0.0003700409,0.00007683284,0.00039327846,0.0000049393107],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002825691,0.0006957589,0.9922776,0.00019285003,0.00040597352,0.000022931032,0.0029471498,0.0001343801,0.0027375016,0.000025682528,0.00021911143,0.000058492147],"study_design_scores_gemma":[0.0010953494,0.0005520123,0.99052787,0.0005624453,0.0014428515,0.00048616194,0.004560899,0.00004416362,0.00014291568,0.00018296509,0.00027069353,0.00013169367],"about_ca_topic_score_codex":0.00014754126,"about_ca_topic_score_gemma":0.00023367154,"teacher_disagreement_score":0.002594586,"about_ca_system_score_codex":0.000094374635,"about_ca_system_score_gemma":0.00022319453,"threshold_uncertainty_score":0.48831594},"labels":[],"label_agreement":null},{"id":"W2166409384","doi":"10.1128/aac.48.6.2298-2301.2004","title":"Genetic Basis of Erythromycin Resistance in Oral Bacteria","year":2004,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Medical Research Council","keywords":"Erythromycin; Tetracycline; Microbiology; Bacteria; Biology; Genetics; Linkage (software); Transposable element; Antibiotics; Gene; Genome","score_opus":0.012286681464634032,"score_gpt":0.2596557916315827,"score_spread":0.24736911016694868,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166409384","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948148,0.000020277426,0.00003482236,0.00448592,0.00006843516,0.00015161055,0.000007342818,0.000013218907,0.00040357516],"genre_scores_gemma":[0.9926987,0.00063449854,0.0009792986,0.0054502464,0.00003827283,0.0000024778114,0.0000029369992,0.00001424684,0.00017926394],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994487,0.000011796404,0.0001921848,0.00015230123,0.000056305642,0.00013871146],"domain_scores_gemma":[0.9997528,0.000004565448,0.000048120364,0.00012230531,0.000024481287,0.000047729238],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000038328508,0.000096387535,0.00021652109,0.0000749037,0.000035187808,0.000008094981,0.000034256584,0.00006553022,0.000105716186],"category_scores_gemma":[0.0000036637416,0.00008166997,0.000051111776,0.00014411038,0.000078266974,0.000033034048,0.000008784682,0.0000669506,0.0000048412867],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001686119,0.0005413557,0.29141164,0.00014897341,0.0000718142,0.000046784033,0.0006404605,0.0000069082257,0.7020975,0.00006825582,0.002458862,0.002338878],"study_design_scores_gemma":[0.0031227947,0.00009684749,0.9292427,0.0001705281,0.000018032462,0.000028701297,0.000014352185,0.0000011466138,0.040961668,0.000080736725,0.02616649,0.00009604881],"about_ca_topic_score_codex":0.00007162598,"about_ca_topic_score_gemma":0.00012928784,"teacher_disagreement_score":0.6611358,"about_ca_system_score_codex":0.000026088497,"about_ca_system_score_gemma":0.000046491026,"threshold_uncertainty_score":0.33304048},"labels":[],"label_agreement":null},{"id":"W2166982346","doi":"10.1093/jac/dki315","title":"Are fluoroquinolone-susceptible isolates of Streptococcus pneumoniae really susceptible? A comparison of resistance mechanisms in Canadian isolates from 1997 and 2003","year":2005,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba","funders":"","keywords":"Levofloxacin; Ciprofloxacin; Streptococcus pneumoniae; Microbiology; Agar dilution; Ofloxacin; Efflux; Quinolone; Biology; Antibacterial agent; Streptococcaceae; Sparfloxacin; Minimum inhibitory concentration; Antibiotics","score_opus":0.012614613920190098,"score_gpt":0.2735566735994597,"score_spread":0.2609420596792696,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166982346","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9938359,0.0006072101,0.00006944178,0.0048017707,0.00014335537,0.0002861981,0.00010145468,0.000010585178,0.00014407543],"genre_scores_gemma":[0.99658966,0.0007475223,0.0015100192,0.0008727177,0.00013434322,0.0000015134016,0.0000062394242,0.00003469506,0.000103308],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981757,0.00006462149,0.0010207081,0.00021033904,0.00016186206,0.00036678597],"domain_scores_gemma":[0.9979331,0.00005190835,0.0010900116,0.00022886963,0.00043645324,0.00025967436],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025665545,0.00023573369,0.00093831355,0.00054040423,0.0000716431,0.00002164045,0.00016181979,0.00023554477,0.00011816036],"category_scores_gemma":[0.00006465165,0.00020906245,0.00015523416,0.00047437142,0.00014553426,0.00016759102,0.000014633909,0.00043010002,0.000002657906],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029040786,0.00034813155,0.13842891,0.000079696074,0.000143791,0.000019693083,0.0009855124,0.00005565588,0.8554383,0.000015542957,0.0035651738,0.0006291902],"study_design_scores_gemma":[0.005879966,0.0016478219,0.09537544,0.0018466274,0.00015639354,0.000093046445,0.00093184464,0.00023601868,0.87382483,0.000107105065,0.019523023,0.00037786548],"about_ca_topic_score_codex":0.0047224243,"about_ca_topic_score_gemma":0.1035385,"teacher_disagreement_score":0.098816074,"about_ca_system_score_codex":0.00017040022,"about_ca_system_score_gemma":0.00050260266,"threshold_uncertainty_score":0.91281956},"labels":[],"label_agreement":null},{"id":"W2167211278","doi":"10.1128/iai.00294-09","title":"Use of <i>Moraxella catarrhalis</i> Lipooligosaccharide Mutants To Identify Specific Oligosaccharide Epitopes Recognized by Human Serum Antibodies","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"National Cancer Institute; National Institutes of Health; National Institute of Allergy and Infectious Diseases; National Institute on Deafness and Other Communication Disorders; U.S. Department of Veterans Affairs","keywords":"Immunogen; Moraxella catarrhalis; Epitope; Moraxella (Branhamella) catarrhalis; Antibody; Biology; Immunology; Microbiology; Antigen; Immune system; Virology; Monoclonal antibody; Haemophilus influenzae; Antibiotics","score_opus":0.054045513905797885,"score_gpt":0.3402586833365535,"score_spread":0.28621316943075564,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167211278","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972558,0.00019617584,0.00010502384,0.0008408166,0.0003914309,0.000415062,0.000108494154,0.00013108282,0.0005561247],"genre_scores_gemma":[0.9964119,0.0016109776,0.000055958622,0.0014058015,0.00010670561,0.0000088505985,0.000052438692,0.000017847045,0.00032948892],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99859864,0.00014532093,0.00049767725,0.00028293027,0.00019101478,0.00028444506],"domain_scores_gemma":[0.9988839,0.000068842644,0.00016141463,0.00042845513,0.00022938351,0.0002279907],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002858462,0.00024031512,0.00046083017,0.0003240915,0.00046275381,0.00009196281,0.000072946015,0.00015356853,0.00014106471],"category_scores_gemma":[0.00015943077,0.00021981297,0.00013327776,0.00045070078,0.00011634098,0.0003534226,0.000055784756,0.0003738899,0.00004603806],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059009963,0.00034025716,0.0611419,0.000041305364,0.00006038906,0.000008360441,0.00029402954,0.0000031923469,0.92440236,0.000039778643,0.0048176176,0.008791811],"study_design_scores_gemma":[0.0007749691,0.0006079952,0.6545324,0.00017122434,0.00008964929,0.00014647281,0.00006836761,0.0000052463492,0.28761956,0.0001276178,0.055612657,0.00024387395],"about_ca_topic_score_codex":0.0015638769,"about_ca_topic_score_gemma":0.00011742372,"teacher_disagreement_score":0.6367828,"about_ca_system_score_codex":0.000051377192,"about_ca_system_score_gemma":0.000038607515,"threshold_uncertainty_score":0.8963713},"labels":[],"label_agreement":null},{"id":"W2167615168","doi":"10.1378/chest.126.4.1015","title":"Plasma D-dimer for Outcome Assessment in Patients With CAP","year":2004,"lang":"en","type":"letter","venue":"CHEST Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Incidence (geometry); Pneumonia severity index; Epidemiology; Intensive care medicine; Etiology; Scopus; MEDLINE; Emergency medicine; Internal medicine","score_opus":0.026538060725446195,"score_gpt":0.30613019335976016,"score_spread":0.279592132634314,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167615168","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3490627,0.000045057925,0.0005896602,0.6441074,0.0025588928,0.0015712829,0.00007223377,0.000054777804,0.0019379898],"genre_scores_gemma":[0.12305185,0.000023805247,0.0026556086,0.8584846,0.010123321,0.00019681445,0.0003858153,0.00027024528,0.0048079425],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984951,0.000030974214,0.00046227747,0.00021236809,0.00040840814,0.00039089267],"domain_scores_gemma":[0.9991561,0.00005250539,0.00027048204,0.00019800174,0.00019077666,0.00013212151],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00014496119,0.00026737913,0.00049836637,0.0003278704,0.00013444561,0.000048254482,0.000098368655,0.00046601202,0.00009893892],"category_scores_gemma":[0.00003647463,0.00017720721,0.00018947538,0.0001106344,0.000056201443,0.000072971714,0.000013856186,0.0032342125,0.000020060887],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007083774,0.00037406865,0.8122915,0.00057789497,0.00028404183,0.00074228656,0.000070847396,0.000049473343,0.00005484514,0.000003861504,0.18507513,0.0004051826],"study_design_scores_gemma":[0.0057072733,0.0007437779,0.38191906,0.0003923502,0.00021473345,0.00027290944,0.000008592805,0.000002848603,0.000011388107,0.000025924335,0.6105005,0.00020061749],"about_ca_topic_score_codex":0.000004974199,"about_ca_topic_score_gemma":0.0000067436754,"teacher_disagreement_score":0.43037248,"about_ca_system_score_codex":0.00064811605,"about_ca_system_score_gemma":0.0007190222,"threshold_uncertainty_score":0.99906534},"labels":[],"label_agreement":null},{"id":"W2167693262","doi":"10.1093/cid/ciu247","title":"Rates and Risk Factors for Recurrent Pneumonia in Patients Hospitalized With Community-Acquired Pneumonia: Population-Based Prospective Cohort Study With 5 Years of Follow-up","year":2014,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Pneumonia; Interquartile range; Hazard ratio; Pneumonia severity index; Community-acquired pneumonia; Proportional hazards model; Internal medicine; Confidence interval; Prospective cohort study; Cohort study; Population; Cohort; Surgery","score_opus":0.01806079967103445,"score_gpt":0.3227292964799762,"score_spread":0.30466849680894176,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167693262","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960024,0.000010442871,0.00005520476,0.000016634816,0.0002193647,0.003453239,0.00011351383,0.00010443742,0.00002475817],"genre_scores_gemma":[0.99928737,0.000016288926,0.000008119943,0.000057749992,0.000038642895,0.00039311347,0.00014570101,0.000044870983,0.0000081539265],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99774045,0.0006635571,0.00066816754,0.00040837628,0.00027384766,0.00024560685],"domain_scores_gemma":[0.9972052,0.0013210413,0.0004283789,0.0004481312,0.0003393527,0.0002579023],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004554736,0.00027285414,0.00089043105,0.00019129859,0.0002576162,0.000029637744,0.0000775448,0.000114603914,0.0000049659448],"category_scores_gemma":[0.0016384856,0.00019892561,0.0001691988,0.00034634984,0.00027511964,0.00010143698,0.000035167443,0.0003167558,0.0000011279066],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010727994,0.006362749,0.99106485,0.00009607574,0.00039742485,0.000001783171,0.00016297666,0.000076176824,0.000005580691,0.000005814971,0.0000044290728,0.00074936985],"study_design_scores_gemma":[0.014121027,0.025200522,0.9588679,0.00018771915,0.0010217553,4.4338393e-7,0.00011419017,0.00014589967,0.000006419359,0.00008027396,0.000017055663,0.00023676985],"about_ca_topic_score_codex":0.0005769895,"about_ca_topic_score_gemma":0.0008971279,"teacher_disagreement_score":0.032196894,"about_ca_system_score_codex":0.00009582238,"about_ca_system_score_gemma":0.00012175819,"threshold_uncertainty_score":0.81119514},"labels":[],"label_agreement":null},{"id":"W2168217638","doi":"10.1139/cjm-2013-0614","title":"Serotype distribution of invasive <i>Streptococcus pneumoniae</i> in Canada after the introduction of the 13-valent pneumococcal conjugate vaccine, 2010–2012","year":2013,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":121,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"University of Manitoba; Shared Health; Mount Sinai Hospital; Health Sciences Centre; Provincial Laboratory of Public Health; Ste. Anne's Hospital; Public Health Agency of Canada","funders":"Pfizer Canada; University of Manitoba; Pfizer","keywords":"Serotype; Pneumococcal conjugate vaccine; Streptococcus pneumoniae; Pneumococcal disease; Medicine; Population; Incidence (geometry); Pneumococcal infections; Conjugate vaccine; Pediatrics; Virology; Microbiology; Biology; Antibiotics; Environmental health; Mathematics","score_opus":0.005112969719037043,"score_gpt":0.18428760662409058,"score_spread":0.17917463690505353,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168217638","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9821423,0.00035346704,0.0000028569482,0.01571988,0.0011889075,0.0004325633,0.00013013453,0.0000011394059,0.000028704257],"genre_scores_gemma":[0.9990849,0.00003611246,0.0000012677275,0.00055756426,0.00019982514,0.000014888313,0.000015291536,0.000008797603,0.00008135902],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99872106,0.0001859648,0.000625621,0.00011786429,0.00006162369,0.00028784887],"domain_scores_gemma":[0.9986072,0.00007201621,0.00042680552,0.00026360998,0.00043167625,0.00019868287],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019907774,0.00013130289,0.00035292187,0.00010909636,0.00006795397,0.000005266144,0.00018799098,0.000108270935,0.00026591637],"category_scores_gemma":[0.00016125999,0.000075444994,0.00012376005,0.00024314981,0.0001913502,0.00007303146,0.000020834259,0.00046496198,0.00000638384],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028211662,0.000019970037,0.500051,0.000030145717,0.00006354306,0.00001911496,0.000086438,0.00008293155,0.4837413,0.0000086971,0.015694663,0.00017397293],"study_design_scores_gemma":[0.00061977323,0.00020730816,0.942137,0.00009599937,0.000080369864,0.001033636,0.00021805416,0.0000021715148,0.028962772,0.000024912742,0.026536908,0.000081079845],"about_ca_topic_score_codex":0.46984622,"about_ca_topic_score_gemma":0.96867996,"teacher_disagreement_score":0.49883375,"about_ca_system_score_codex":0.00051700283,"about_ca_system_score_gemma":0.004882259,"threshold_uncertainty_score":0.8660917},"labels":[],"label_agreement":null},{"id":"W2168386503","doi":"10.1128/aac.00609-06","title":"Molecular Characterization of Increasing Fluoroquinolone Resistance in <i>Streptococcus pneumoniae</i> Isolates in Canada, 1997 to 2005","year":2006,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Sciences Centre; University of Manitoba","funders":"Bayer Canada; Canadian Institutes of Health Research; AstraZeneca Canada; GlaxoSmithKline; University of Manitoba; AstraZeneca; Pfizer; Bristol-Myers Squibb; Sanofi; Abbott Laboratories","keywords":"Ciprofloxacin; Streptococcus pneumoniae; Gatifloxacin; Moxifloxacin; Levofloxacin; Microbiology; Quinolone; Serotype; Pulsed-field gel electrophoresis; Biology; Gemifloxacin; Ofloxacin; Antibacterial agent; Genotype; Antibiotics; Genetics; Gene","score_opus":0.004588832019003025,"score_gpt":0.21229447206441798,"score_spread":0.20770564004541495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168386503","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948791,0.000016461569,0.000019805857,0.0045490293,0.000042856933,0.0003141553,0.0000326517,0.000008854357,0.00013708626],"genre_scores_gemma":[0.99442756,0.00013039506,0.000051521893,0.0052293884,0.000028855071,0.0000076945935,0.00003367219,0.000016492142,0.00007439576],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99919426,0.000027867643,0.0002954036,0.00019224113,0.00007338508,0.00021680891],"domain_scores_gemma":[0.9997234,0.000008660216,0.00007292114,0.00011594256,0.000026743768,0.00005233834],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006080931,0.00012032155,0.00024633756,0.000118925476,0.000029479495,0.0000094123925,0.000041501735,0.00005552909,0.000016676266],"category_scores_gemma":[0.00000451109,0.00011721264,0.000027517359,0.00023078125,0.000025439736,0.000044085715,0.000012120693,0.000084436426,9.777009e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049828926,0.00008538922,0.33089897,0.00003310016,0.000007178776,0.000022517375,0.00005212407,0.000007798634,0.6682561,0.0000048004304,0.000332591,0.00024962876],"study_design_scores_gemma":[0.0010440588,0.000029811537,0.8625494,0.00025850857,0.000006334387,0.000008703096,0.000008882735,0.000036180667,0.12367377,0.0000056899385,0.012261449,0.00011717582],"about_ca_topic_score_codex":0.11126071,"about_ca_topic_score_gemma":0.3153671,"teacher_disagreement_score":0.5445823,"about_ca_system_score_codex":0.00012273139,"about_ca_system_score_gemma":0.00016591349,"threshold_uncertainty_score":0.8946575},"labels":[],"label_agreement":null},{"id":"W2168672062","doi":"10.1086/523583","title":"A Randomized, Double-Blind Trial of Pneumococcal Vaccination in Adult Allogeneic Stem Cell Transplant Donors and Recipients","year":2007,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University of Alberta; Queen's University","funders":"Centers for Disease Control and Prevention; University of Alabama at Birmingham","keywords":"Medicine; Transplantation; Vaccination; Immunogenicity; Hematopoietic stem cell transplantation; Pneumococcal conjugate vaccine; Internal medicine; Odds ratio; Pneumococcal polysaccharide vaccine; Pneumococcal vaccine; Randomized controlled trial; Confidence interval; Population; Immunology; Streptococcus pneumoniae; Antigen; Pneumococcal disease","score_opus":0.047464701381267085,"score_gpt":0.36763884855592366,"score_spread":0.3201741471746566,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168672062","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950624,0.00013050495,0.00016841131,0.00014400826,0.00083614525,0.0021210078,0.000017775503,0.0000707133,0.0014490312],"genre_scores_gemma":[0.99788135,0.0013323668,0.0000021057074,0.0002633331,0.0002825324,0.000118133634,0.000021161779,0.000020644142,0.00007834253],"study_design_codex":"observational","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9974487,0.00030219916,0.0013608625,0.00038408488,0.00022675426,0.00027742767],"domain_scores_gemma":[0.9976304,0.001293292,0.00029963622,0.00023497894,0.00017146739,0.00037022095],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001222002,0.00020592692,0.0009372775,0.00033820307,0.00007359613,0.000015600377,0.000060250106,0.0002703101,0.000032852808],"category_scores_gemma":[0.0002476873,0.00016114219,0.00045027843,0.00033102857,0.00020260455,0.000088522866,0.000024741028,0.00032782607,0.000009708302],"study_design_candidate":"randomized_trial","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.45487604,0.0031438342,0.5369509,0.00012013439,0.00011457882,0.00004271083,0.00008776794,0.000013928415,0.00037297126,0.00009004051,0.000012287974,0.0041748104],"study_design_scores_gemma":[0.7050153,0.0011484463,0.29256293,0.00009616905,0.00050328445,0.000011665425,0.000027426962,0.000040261773,0.00029302717,0.00007972313,0.00008450759,0.00013724218],"about_ca_topic_score_codex":0.00005089791,"about_ca_topic_score_gemma":0.0002462897,"teacher_disagreement_score":0.25013927,"about_ca_system_score_codex":0.000059113503,"about_ca_system_score_gemma":0.00014113059,"threshold_uncertainty_score":0.6571188},"labels":[],"label_agreement":null},{"id":"W2168803368","doi":"10.1111/j.1469-0691.2011.03684.x","title":"Development of a real-time PCR assay for the specific detection and identification of Streptococcus pseudopneumoniae using the recA gene","year":2011,"lang":"en","type":"article","venue":"Clinical Microbiology and Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval; Centre hospitalier universitaire de Québec","funders":"","keywords":"Streptococcus mitis; Streptococcus oralis; Biology; TaqMan; 16S ribosomal RNA; Streptococcus pneumoniae; Genetics; Gene; Phylogenetic tree; Identification (biology); Ribosomal RNA; Housekeeping gene; rpoB; Computational biology; Real-time polymerase chain reaction; Streptococcus; Microbiology; Bacteria; Gene expression","score_opus":0.08884356099181534,"score_gpt":0.33917800970222384,"score_spread":0.2503344487104085,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168803368","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.992051,0.00008072576,0.006767844,0.000069721464,0.00037008288,0.0005900443,0.000007529788,0.000015944064,0.000047112964],"genre_scores_gemma":[0.9988931,0.0005498945,0.00035674166,0.000033844477,0.00008481354,0.000035215053,0.000006154782,0.0000074744057,0.00003277842],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988809,0.00015416455,0.00065354264,0.00019323826,0.000020204512,0.000097953896],"domain_scores_gemma":[0.99895954,0.00035799426,0.00034050044,0.00017521286,0.00013704399,0.000029677742],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012585561,0.00008733496,0.00021839552,0.000060292285,0.00025546228,0.000004382935,0.00003228124,0.00019276328,0.000013188703],"category_scores_gemma":[0.0001642302,0.00005090799,0.00008475778,0.00010439269,0.00040937556,0.00003758771,0.000027689342,0.00013887473,0.0000022433248],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009859591,0.0001076393,0.03240766,0.000027724323,0.000094701,9.5747644e-8,0.00019186805,0.0000011668155,0.94588566,0.000025745989,0.000009927694,0.021149212],"study_design_scores_gemma":[0.000772608,0.0005648701,0.59718347,0.000041209874,0.00024748954,0.0001189108,0.00007370867,0.00026456147,0.39476755,0.00009659836,0.005779143,0.00008988736],"about_ca_topic_score_codex":0.000015650781,"about_ca_topic_score_gemma":0.000018813538,"teacher_disagreement_score":0.5647758,"about_ca_system_score_codex":0.000017800308,"about_ca_system_score_gemma":0.00005094047,"threshold_uncertainty_score":0.20759676},"labels":[],"label_agreement":null},{"id":"W2169054869","doi":"10.1093/cid/cis414","title":"Macrolide-Based Regimens and Mortality in Hospitalized Patients With Community-Acquired Pneumonia: A Systematic Review and Meta-analysis","year":2012,"lang":"en","type":"review","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":138,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; University of Alberta","funders":"Canadian Institutes of Health Research; Pfizer Canada; Infectious Diseases Society of America","keywords":"Medicine; Internal medicine; Community-acquired pneumonia; Pneumonia; Confidence interval; Guideline; Relative risk; Randomized controlled trial; Antibiotics; Macrolide Antibiotics; Intensive care medicine; Erythromycin; Pathology","score_opus":0.1295967233759579,"score_gpt":0.4206984227457641,"score_spread":0.2911016993698062,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169054869","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.007316238,0.9864092,0.000007239145,0.000056682733,0.00006020927,0.0055217547,0.00043275696,0.0001314032,0.00006453156],"genre_scores_gemma":[0.033331703,0.96248347,0.0000025000177,0.0018516717,0.000033594268,0.0017396569,0.00043764373,0.000075691765,0.00004406927],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9920879,0.0041551143,0.002362187,0.00062370056,0.00035744783,0.0004136419],"domain_scores_gemma":[0.99443644,0.001790258,0.0013291865,0.0014731126,0.00024147973,0.0007295079],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0014272495,0.00078945473,0.013220418,0.0004636475,0.00025188708,0.00006576619,0.00015262069,0.00040873804,0.00007479165],"category_scores_gemma":[0.0010714396,0.0004641608,0.0029805286,0.0012292096,0.0005558812,0.00012293574,0.00013473257,0.00082853093,0.000015020473],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000054377665,0.0020940215,0.2892843,0.6147382,0.09351426,0.000023407676,0.0000074637737,2.907523e-7,5.2218154e-9,0.000004629723,0.000008777556,0.00031916847],"study_design_scores_gemma":[0.00096013566,0.0004911279,0.10532926,0.02645997,0.8633795,0.000011378313,0.0000026780651,0.0000012636858,3.867548e-9,0.0000089797095,0.002929763,0.00042593872],"about_ca_topic_score_codex":0.000078672536,"about_ca_topic_score_gemma":0.00013852702,"teacher_disagreement_score":0.7698652,"about_ca_system_score_codex":0.00011500332,"about_ca_system_score_gemma":0.00026195846,"threshold_uncertainty_score":0.999781},"labels":[],"label_agreement":null},{"id":"W2169725634","doi":"10.1586/14787210.5.2.185","title":"Faropenem: review of a new oral penem","year":2007,"lang":"en","type":"review","venue":"Expert Review of Anti-infective Therapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Health Sciences Centre; University of British Columbia","funders":"","keywords":"Cefpodoxime; Medicine; Amoxicillin; Chronic bronchitis; Pharmacology; Azithromycin; Pneumonia; Population; Clarithromycin; Antibiotics; Antibacterial agent; Microbiology; Internal medicine; Biology","score_opus":0.10933529571836421,"score_gpt":0.46182777031669286,"score_spread":0.35249247459832866,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169725634","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000048900656,0.98842466,0.00010827957,0.00036519975,0.00054114487,0.0053334753,0.00003238452,0.00008085783,0.005109082],"genre_scores_gemma":[9.833119e-7,0.9897619,0.00019008393,0.008718981,0.00054439105,0.00017405776,0.000111179645,0.00014846097,0.0003499836],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9947404,0.0006882162,0.002583099,0.0007468066,0.00072463346,0.000516802],"domain_scores_gemma":[0.99524873,0.00027944052,0.0019362011,0.0014364782,0.0007392627,0.00035987905],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0015685554,0.0010317437,0.0088725025,0.00046424425,0.00008699528,0.000009522058,0.0004536972,0.00042699013,0.0019505691],"category_scores_gemma":[0.00042273,0.00065757683,0.0035890872,0.0017078602,0.00028323563,0.00012961241,0.00009932833,0.0007639001,0.00016451863],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000071368863,0.00032940682,0.000019923587,0.32519376,0.00072171463,0.000021128391,0.00002785183,4.1486197e-9,0.000087177774,0.000045105804,0.012434853,0.66111195],"study_design_scores_gemma":[0.000405465,0.0005121421,0.000038501395,0.43573496,0.00081321126,0.0002636303,0.0000022667548,2.1512196e-8,0.00008079388,0.0000031016673,0.5618311,0.00031479498],"about_ca_topic_score_codex":0.00010913843,"about_ca_topic_score_gemma":0.0000027254744,"teacher_disagreement_score":0.6607971,"about_ca_system_score_codex":0.00020794387,"about_ca_system_score_gemma":0.0018773599,"threshold_uncertainty_score":0.99958754},"labels":[],"label_agreement":null},{"id":"W2170148352","doi":"10.1128/aac.01153-06","title":"High-Level Telithromycin Resistance in a Clinical Isolate of <i>Streptococcus pneumoniae</i>","year":2007,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"Medical Research Council","keywords":"Telithromycin; Streptococcus pneumoniae; Microbiology; Mutant; Ketolide; Ribosomal protein; Transformation (genetics); Biology; Streptococcaceae; Antibacterial agent; Streptococcus; Mutation; Virology; Bacteria; Antibiotics; Gene; Genetics; Ribosome","score_opus":0.027530273107609485,"score_gpt":0.32281440440959236,"score_spread":0.2952841313019829,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170148352","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948761,0.00003491448,0.00017356736,0.0037943185,0.00014924537,0.00030061862,0.00003164862,0.000023303972,0.00061631954],"genre_scores_gemma":[0.98835194,0.0009055755,0.00025695874,0.009541567,0.00008954739,0.000002712965,0.000007233949,0.000022361402,0.0008220745],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987281,0.000028355978,0.0006045597,0.00027767665,0.00010151712,0.0002597769],"domain_scores_gemma":[0.9994497,0.000046323512,0.00014373753,0.00020042434,0.00005039484,0.00010946704],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035087232,0.00015332153,0.00040485736,0.00008604505,0.00005204128,0.000009411505,0.0000633752,0.0001614671,0.000051872288],"category_scores_gemma":[0.0000148166055,0.00012856313,0.00010775395,0.00020901667,0.00016826713,0.000047913785,0.000017643366,0.00021323384,0.0000060408643],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025296622,0.0008007376,0.5672742,0.00008871682,0.00008475684,0.00004179248,0.00020112495,2.8092728e-7,0.40756187,0.000050119274,0.017628528,0.0060149226],"study_design_scores_gemma":[0.0036980037,0.00020526827,0.86972946,0.00018128143,0.000025213767,0.000013835493,0.000021790234,0.0000021111218,0.024486821,0.000037204787,0.10144337,0.00015564664],"about_ca_topic_score_codex":0.000059438662,"about_ca_topic_score_gemma":0.00013139486,"teacher_disagreement_score":0.38307503,"about_ca_system_score_codex":0.000021970387,"about_ca_system_score_gemma":0.000043649572,"threshold_uncertainty_score":0.5242652},"labels":[],"label_agreement":null},{"id":"W2170414771","doi":"10.1093/jac/dki249","title":"Mechanisms of resistance to telithromycin in Streptococcus pneumoniae","year":2005,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Manitoba","funders":"","keywords":"Telithromycin; Ketolide; Streptococcus pneumoniae; Microbiology; Biology; 23S ribosomal RNA; Antibacterial agent; Efflux; Antibiotics; Genetics; Gene","score_opus":0.008678107665138808,"score_gpt":0.2726435999667099,"score_spread":0.26396549230157107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170414771","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97771394,0.000036230456,0.0010632823,0.02021424,0.00014918529,0.00024523403,0.000005941243,0.0000101455025,0.0005618124],"genre_scores_gemma":[0.99185103,0.0001169061,0.0026996902,0.0047836285,0.00018559567,0.0000014384444,4.392609e-7,0.000023072824,0.00033820266],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987899,0.000032218617,0.00066234596,0.00012308559,0.00019747007,0.00019495926],"domain_scores_gemma":[0.99917006,0.00002705424,0.00030233187,0.00017507804,0.00019936099,0.00012613405],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028058552,0.00013343558,0.0004667905,0.0003562418,0.000028950288,0.000009840085,0.00011892757,0.00009569006,0.00010013687],"category_scores_gemma":[0.00003557158,0.00010865899,0.000187973,0.00036039448,0.000040939947,0.000098824574,0.000010792108,0.0002586104,0.000010802289],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022747893,0.0003985587,0.0039747804,0.000037698115,0.00005035707,0.00003283272,0.00034771007,0.00009189683,0.98911464,0.000049743754,0.0036900255,0.0019842891],"study_design_scores_gemma":[0.0031832587,0.00056508253,0.036038313,0.00055081345,0.000030185513,0.00016641247,0.0000740519,0.0000055266346,0.9025042,0.00008370234,0.056657765,0.0001406833],"about_ca_topic_score_codex":0.0000035194819,"about_ca_topic_score_gemma":0.000051480627,"teacher_disagreement_score":0.08661042,"about_ca_system_score_codex":0.000117769385,"about_ca_system_score_gemma":0.0001796285,"threshold_uncertainty_score":0.4430985},"labels":[],"label_agreement":null},{"id":"W2171684012","doi":"10.1086/586750","title":"Treatment of Community‐Acquired Pneumonia Down Under versus the United States: Is It Really That Different?","year":2008,"lang":"en","type":"letter","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Community-acquired pneumonia; Pneumonia; Intensive care medicine; MEDLINE; Family medicine; Internal medicine","score_opus":0.15274317810717733,"score_gpt":0.3945395577640868,"score_spread":0.24179637965690945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171684012","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6704836,0.000381146,0.00002153579,0.3229196,0.0021956603,0.0012712346,0.00089888077,0.00033729142,0.001491022],"genre_scores_gemma":[0.46392092,0.012805577,5.016051e-7,0.51557714,0.0023468882,0.00022804366,0.0030157508,0.00013876054,0.0019664434],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9954998,0.0016020394,0.0012225704,0.00048762944,0.0005965309,0.00059141486],"domain_scores_gemma":[0.9910835,0.0056594596,0.0007125498,0.001844902,0.0003162356,0.0003833507],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00012655354,0.00077634264,0.0016350034,0.00037695983,0.00078069215,0.00005926123,0.00035407697,0.0010858857,0.00035716916],"category_scores_gemma":[0.0003446001,0.00046442117,0.0016136237,0.00047804377,0.0016276552,0.00006270758,0.00013540451,0.0017209444,0.000120270764],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036323292,0.0061074784,0.13835743,0.0003338509,0.0042408025,0.00043122112,0.0006908775,0.00004464875,0.00002320598,0.000011657417,0.8481767,0.0012188458],"study_design_scores_gemma":[0.006938803,0.007714708,0.20482898,0.00023569622,0.0039883694,0.00007530052,0.00036144085,0.000038956718,0.000019178311,0.000166357,0.77512705,0.0005051667],"about_ca_topic_score_codex":0.0006969696,"about_ca_topic_score_gemma":0.00014042857,"teacher_disagreement_score":0.2065627,"about_ca_system_score_codex":0.00039032477,"about_ca_system_score_gemma":0.00044829177,"threshold_uncertainty_score":0.9997808},"labels":[],"label_agreement":null},{"id":"W2172033363","doi":"10.1016/j.ijid.2012.05.999","title":"A five-year surveillance study (2007-2011) of invasive pneumococcal disease cases among childern of Ontario in Canada","year":2012,"lang":"en","type":"article","venue":"International Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary; Mount Sinai Hospital; Public Health Ontario; University of Toronto","funders":"","keywords":"Broth microdilution; Serotype; Penicillin; Medicine; Streptococcus pneumoniae; Antibiotic resistance; Pneumococcal disease; Antibiotics; Pneumococcal conjugate vaccine; Microbiology; Antimicrobial; Virology; Biology; Minimum inhibitory concentration","score_opus":0.008314673375310612,"score_gpt":0.2517148157166946,"score_spread":0.24340014234138396,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2172033363","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979333,0.0002524576,0.000004367953,0.00008868996,0.0011099415,0.00025442874,0.00010233515,0.000006437254,0.00024804313],"genre_scores_gemma":[0.99946904,0.000041194085,0.000001961436,0.00008389122,0.000315461,0.000009013011,0.000007904982,0.000013816858,0.000057743404],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99823225,0.0001062724,0.0007110436,0.00011394234,0.0006431163,0.00019338945],"domain_scores_gemma":[0.9978721,0.0002732834,0.00059409055,0.00014889996,0.0007390943,0.00037253316],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001612542,0.00015282838,0.00042305997,0.00035708796,0.000031058364,0.000009493153,0.00015413895,0.000030719188,0.00033806462],"category_scores_gemma":[0.0006097682,0.0001280842,0.00019475592,0.00011467888,0.00008501118,0.00023939839,0.00005048313,0.00023024755,0.0000029539276],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031035655,0.0024348777,0.9947636,0.00003723586,0.00045542434,0.000567064,0.0004884222,0.00039300992,0.000251285,0.0000100609595,0.0001758683,0.00011279007],"study_design_scores_gemma":[0.0021169146,0.0004454421,0.9960244,0.00019960661,0.00014757879,0.00023110722,0.00043277384,0.00000385156,0.00009530719,0.000019593486,0.0001793992,0.000104002094],"about_ca_topic_score_codex":0.6273468,"about_ca_topic_score_gemma":0.8972998,"teacher_disagreement_score":0.269953,"about_ca_system_score_codex":0.0012407133,"about_ca_system_score_gemma":0.005041002,"threshold_uncertainty_score":0.89425206},"labels":[],"label_agreement":null},{"id":"W2172208051","doi":"10.1093/jac/dkr176","title":"Impact of guideline-consistent therapy on outcome of patients with healthcare-associated and community-acquired pneumonia","year":2011,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Guideline; Pneumonia; Medicine; Intensive care medicine; Community-acquired pneumonia; Health care; Internal medicine; Political science; Pathology","score_opus":0.04627564556225759,"score_gpt":0.31376599094381413,"score_spread":0.2674903453815565,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2172208051","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987629,0.00002769195,0.000015581942,0.0007346518,0.00009230533,0.00024328513,0.000036318503,0.0000091764805,0.000078062],"genre_scores_gemma":[0.99782383,0.00023017815,0.00023280122,0.0016368395,0.00002765493,5.092333e-7,0.000005864704,0.0000303905,0.000011925245],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983623,0.00019383561,0.00095732283,0.000085896165,0.00022488114,0.00017578565],"domain_scores_gemma":[0.9976484,0.00006407903,0.0010926912,0.00023651781,0.00082499965,0.0001333157],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004617613,0.00019343804,0.00073586364,0.00024323829,0.00009650353,0.000005969245,0.00010985228,0.0001181695,0.000044725395],"category_scores_gemma":[0.00004848742,0.00011989803,0.00030531533,0.00019311756,0.00017135407,0.00007414819,0.000011181024,0.00035720135,4.4393133e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002656873,0.0028937166,0.8099783,0.00003924652,0.00064750446,0.0000056567405,0.001336773,0.0000047960034,0.18126884,0.000002038104,0.00026920956,0.0008970474],"study_design_scores_gemma":[0.008180292,0.011593505,0.958447,0.00025395604,0.000059774255,0.000057278536,0.000050639253,0.0000025814968,0.021070823,0.000009326161,0.00016348214,0.000111391484],"about_ca_topic_score_codex":0.00027471647,"about_ca_topic_score_gemma":0.000015924179,"teacher_disagreement_score":0.16019802,"about_ca_system_score_codex":0.000090868016,"about_ca_system_score_gemma":0.00018245936,"threshold_uncertainty_score":0.48893},"labels":[],"label_agreement":null},{"id":"W2180378587","doi":"10.1371/journal.pmed.1001903","title":"The PneuCarriage Project: A Multi-Centre Comparative Study to Identify the Best Serotyping Methods for Examining Pneumococcal Carriage in Vaccine Evaluation Studies","year":2015,"lang":"en","type":"article","venue":"PLoS Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":125,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Marie Bashir Institute, University of Sydney; Statens Serum Institut; Foundation for the National Institutes of Health; Faculty of Tropical Medicine, Mahidol University; St. George's, University of London; Medical Research Council; Canadian Institutes of Health Research; Directorate for Biological Sciences; National Institutes of Health; Nankai University; Public Health England; University of Oxford; University of Bern; Emory University; Wellcome Trust; University College London; Johns Hopkins Bloomberg School of Public Health; Fondation Mérieux; City University of Hong Kong; Inselspital, Universitätsspital Bern; Institute of Infection and Immunity; Harvard School of Dental Medicine; Università degli Studi di Firenze; Mahidol University; Johns Hopkins University; Bill and Melinda Gates Foundation","keywords":"Serotype; Carriage; Medicine; Streptococcus pneumoniae; Virology; Microbiology; Biology; Pathology; Antibiotics","score_opus":0.5222199535785846,"score_gpt":0.5720554428072757,"score_spread":0.04983548922869108,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2180378587","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9774395,0.0019640103,0.00063011015,0.0077053234,0.0010230261,0.010947447,0.000004394248,0.00006610907,0.00022006716],"genre_scores_gemma":[0.9959518,0.00004535544,0.0005085743,0.0004623473,0.0006801734,0.0020256524,0.000010498372,0.000034487966,0.00028113858],"study_design_codex":"qualitative","study_design_gemma":"qualitative","domain_scores_codex":[0.99624646,0.0014535749,0.00076607306,0.0004793067,0.0006146958,0.00043992198],"domain_scores_gemma":[0.99581325,0.002081981,0.00021458075,0.00055132236,0.0011346892,0.0002041935],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0068291863,0.0003099786,0.00079129095,0.0002828182,0.00048951124,0.000032836106,0.0002262997,0.0000639453,0.0000065609015],"category_scores_gemma":[0.0082873115,0.00015386798,0.00006460151,0.0008589075,0.00012796947,0.00010118378,0.00013311359,0.0004244972,0.00001447014],"study_design_candidate":"qualitative","study_design_consensus":"qualitative","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001344028,0.0046833,0.16607061,0.00036275107,0.002870637,0.00008719931,0.5628364,0.00047532163,0.23781301,0.00007136307,0.0026729314,0.020712417],"study_design_scores_gemma":[0.020343475,0.0058395863,0.1233308,0.0013582149,0.0026164926,0.000062894425,0.8230002,0.015567198,0.0015636245,0.000118172255,0.00579428,0.00040505882],"about_ca_topic_score_codex":0.000110835856,"about_ca_topic_score_gemma":0.001221822,"teacher_disagreement_score":0.26016378,"about_ca_system_score_codex":0.00037700208,"about_ca_system_score_gemma":0.0002952904,"threshold_uncertainty_score":0.9921285},"labels":[],"label_agreement":null},{"id":"W2180835310","doi":"10.1186/s12887-015-0510-9","title":"A randomized controlled trial of hospital versus home based therapy with oral amoxicillin for severe pneumonia in children aged 3 – 59 months: The IndiaCLEN Severe Pneumonia Oral Therapy (ISPOT) Study","year":2015,"lang":"en","type":"article","venue":"BMC Pediatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Randomized controlled trial; Pneumonia; Amoxicillin; Pediatrics; Intention-to-treat analysis; Clinical trial; Emergency medicine; Internal medicine; Antibiotics","score_opus":0.030943861728890402,"score_gpt":0.2908148615847636,"score_spread":0.2598709998558732,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2180835310","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.970366,0.000542336,0.00008287927,0.0003885954,0.0009866192,0.027338548,0.0001039559,0.00012079924,0.00007024404],"genre_scores_gemma":[0.99515927,0.00028259086,0.00017871383,0.00021080112,0.00076522096,0.0031596154,0.00006065231,0.00009770574,0.00008543692],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9951717,0.0013539016,0.0012249133,0.00060454186,0.0010186735,0.00062623527],"domain_scores_gemma":[0.9956185,0.0020740693,0.0007771599,0.0007552913,0.00048115384,0.00029382634],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0033749475,0.0006203584,0.0025762855,0.000501938,0.0002070683,0.00007398487,0.0003937335,0.00031894224,0.000017274742],"category_scores_gemma":[0.0011101934,0.00034188764,0.00080349395,0.0010305806,0.00023899594,0.00017588798,0.00004490105,0.0005785967,0.0000064126652],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.67314845,0.003294148,0.32105428,0.000015519428,0.000535264,0.000012301223,0.0010290291,0.0004916981,0.000054627188,0.000003984891,0.00011638318,0.0002442973],"study_design_scores_gemma":[0.85075665,0.014629203,0.1322597,0.00001625361,0.0008105167,0.000008831475,0.00063235254,0.000341919,0.00001684605,0.000029718572,0.000072377086,0.00042566855],"about_ca_topic_score_codex":0.00024172373,"about_ca_topic_score_gemma":0.00027485538,"teacher_disagreement_score":0.1887946,"about_ca_system_score_codex":0.0001808612,"about_ca_system_score_gemma":0.0015884503,"threshold_uncertainty_score":0.9999033},"labels":[],"label_agreement":null},{"id":"W2182795308","doi":"10.1007/s40801-015-0024-7","title":"Prevnar 7 Childhood Immunization Program and Serotype Replacement: Changes in Pneumococcal Incidence and Resulting Impact on Health Care Costs in Alberta (2003–2008)","year":2015,"lang":"en","type":"article","venue":"Drugs - Real World Outcomes","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Children's Hospital; University of Calgary; University of Alberta; Institute of Health Economics","funders":"Pfizer Canada; Pfizer","keywords":"Pneumococcal conjugate vaccine; Vaccination; Serotype; Medicine; Immunization; Context (archaeology); Incidence (geometry); Environmental health; Pediatrics; Streptococcus pneumoniae; Immunology; Biology; Antibiotics; Immune system","score_opus":0.014291728036771673,"score_gpt":0.33948475761243396,"score_spread":0.3251930295756623,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2182795308","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9881599,0.00036120613,2.0230127e-7,0.007540782,0.00010829807,0.0015510882,0.000011060982,0.000064755885,0.0022026866],"genre_scores_gemma":[0.99828434,0.0003256377,0.000051916413,0.00072065654,0.000045633198,0.00009775856,0.00008049706,0.000025615038,0.00036795242],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99852836,0.00017096542,0.00036482577,0.000346606,0.00021750046,0.00037172265],"domain_scores_gemma":[0.9990728,0.0001362714,0.00014760674,0.00027912392,0.00009736441,0.00026685608],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041158948,0.00022733817,0.00045329332,0.0004496432,0.000107125794,0.000037352773,0.000058693495,0.00007737992,0.0000039677507],"category_scores_gemma":[0.00037403146,0.00017282802,0.000027826132,0.00080818497,0.000058437487,0.000111900554,0.00007003516,0.00033271278,0.000004322096],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015329118,0.0002075954,0.97241586,0.00007812229,0.000021228605,0.000011847663,0.00834167,0.000020811241,0.00005214301,0.00006467554,0.00007214547,0.018560616],"study_design_scores_gemma":[0.0026234507,0.0010511078,0.9921198,0.00052363466,0.00001607715,0.000019968327,0.0013861483,0.00011997268,0.00003537353,0.000009899187,0.0019344769,0.00016007667],"about_ca_topic_score_codex":0.0112341475,"about_ca_topic_score_gemma":0.055236418,"teacher_disagreement_score":0.04400227,"about_ca_system_score_codex":0.0005359131,"about_ca_system_score_gemma":0.0002854253,"threshold_uncertainty_score":0.9953501},"labels":[],"label_agreement":null},{"id":"W2184095859","doi":"10.1093/pch/20.8.441","title":"Uncomplicated pneumonia in healthy Canadian children and youth: Practice points for management","year":2015,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumonia; Streptococcus pneumoniae; Empyema; Chest radiograph; Gynecology; Internal medicine; Surgery; Lung; Antibiotics; Microbiology","score_opus":0.028665922493508647,"score_gpt":0.3109582227741556,"score_spread":0.28229230028064695,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2184095859","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.44808653,0.009152925,0.0004329964,0.51497185,0.001351083,0.00940812,0.0009137745,0.0003244249,0.015358288],"genre_scores_gemma":[0.9492102,0.0025913194,0.0011991468,0.04605485,0.00046607055,0.00007740941,0.0003149089,0.00004938553,0.00003666558],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998129,0.00011438385,0.0004529759,0.00041263603,0.00023169184,0.00065929483],"domain_scores_gemma":[0.9979007,0.000080504826,0.00016908046,0.00029786417,0.00013774575,0.0014140749],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010456752,0.00018648211,0.00034681655,0.00062234525,0.0002797267,0.000025614625,0.00008477581,0.00011350459,0.000002250574],"category_scores_gemma":[0.0002563755,0.00017710173,0.00005130458,0.0006795374,0.00003345962,0.00009775464,0.00003718879,0.00037455055,0.00002672713],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00086464576,0.0012971738,0.9300919,0.00078835175,0.0002786553,0.000077396704,0.006946772,0.00010998258,0.0000041868325,0.008286775,0.02077875,0.030475385],"study_design_scores_gemma":[0.006098062,0.0015491233,0.8969288,0.00008605358,0.00015093439,0.00029372788,0.0008171243,0.00009247472,6.5602563e-7,0.00028092074,0.09340891,0.0002932019],"about_ca_topic_score_codex":0.04792084,"about_ca_topic_score_gemma":0.02945902,"teacher_disagreement_score":0.5011237,"about_ca_system_score_codex":0.0009126379,"about_ca_system_score_gemma":0.0013006733,"threshold_uncertainty_score":0.98825085},"labels":[],"label_agreement":null},{"id":"W2187549512","doi":"","title":"Community-acquired pneumonia: pneumococcal vaccine.","year":2015,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; MEDLINE; Cochrane Library; Randomized controlled trial; Pneumonia; Community-acquired pneumonia; Systematic review; Pneumococcal polysaccharide vaccine; Pneumococcal vaccine; Family medicine; Watchful waiting; Intensive care medicine; Streptococcus pneumoniae; Pediatrics; Internal medicine; Pneumococcal disease","score_opus":0.08018147337728608,"score_gpt":0.2763964581973306,"score_spread":0.1962149848200445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2187549512","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.956166,0.00008829299,0.00003782009,0.006673179,0.0006720545,0.0008436928,0.0000062309505,0.0003508703,0.035161816],"genre_scores_gemma":[0.99405855,0.000009797099,0.000016128115,0.0017052259,0.00032146682,0.0010202568,0.000015818856,0.000032989956,0.0028197633],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99864185,0.00020123577,0.00027536915,0.00017199904,0.0002495814,0.00045995996],"domain_scores_gemma":[0.9984743,0.000058132035,0.00006511932,0.00055486726,0.00016246496,0.0006851196],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006056465,0.00017530638,0.00031685334,0.00016156703,0.00020929771,0.00003258247,0.00014935006,0.00013417278,0.000021440424],"category_scores_gemma":[0.0003822605,0.0001450574,0.00012224673,0.00034292557,0.00006268159,0.00012479683,0.00009669164,0.00039254202,0.00017312936],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005710728,0.0036071714,0.7393711,0.00026958756,0.00066246814,0.00048251703,0.002198102,0.00006269563,0.059709214,0.0007204457,0.032567076,0.1597785],"study_design_scores_gemma":[0.001664645,0.00014473847,0.8274313,0.0000096535205,0.00008600498,0.00033341383,0.00023811826,0.000019183544,0.00079786597,0.00018159163,0.16893902,0.00015443674],"about_ca_topic_score_codex":0.000057765155,"about_ca_topic_score_gemma":0.000034203586,"teacher_disagreement_score":0.15962407,"about_ca_system_score_codex":0.00015019924,"about_ca_system_score_gemma":0.00009686581,"threshold_uncertainty_score":0.5915269},"labels":[],"label_agreement":null},{"id":"W2188346949","doi":"10.1017/s1481803500009052","title":"Utility of follow-up recommendations for patients discharged with community-acquired pneumonia","year":2004,"lang":"en","type":"article","venue":"Canadian Journal of Emergency Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen Elizabeth II Health Sciences Centre; Dalhousie University","funders":"","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Intensive care medicine; Coronavirus disease 2019 (COVID-19); MEDLINE; Medical emergency; Emergency medicine; Internal medicine","score_opus":0.10522420636996911,"score_gpt":0.34760937136157505,"score_spread":0.24238516499160595,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2188346949","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98114294,0.0001390792,0.0008176561,0.011793314,0.0042430344,0.00045940108,0.00009951417,0.000007928158,0.0012971625],"genre_scores_gemma":[0.99892163,0.000073397685,0.0001265913,0.00025447173,0.0002499266,0.000008839474,0.000069036476,0.000022023802,0.00027409228],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984989,0.000089703186,0.00083242555,0.00009455146,0.00021103748,0.0002733947],"domain_scores_gemma":[0.9973369,0.000058301994,0.00044507766,0.00028867015,0.0011004799,0.00077051873],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045357452,0.0001569535,0.00047111989,0.00037440934,0.000359879,0.0000020503373,0.00015744791,0.00007312721,0.0008073575],"category_scores_gemma":[0.00067561644,0.000108967644,0.00015983995,0.0004194967,0.00018376338,0.0001205767,0.000006107354,0.0002975859,0.0000019382278],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006061712,0.001036237,0.9355353,0.00064015924,0.000994269,0.000033586664,0.010262976,0.000023351404,0.021783687,0.0007174515,0.025356507,0.003010317],"study_design_scores_gemma":[0.020025846,0.013441231,0.7244962,0.0024034374,0.0012934832,0.00009480058,0.0042016865,0.000015368187,0.0011019475,0.001574215,0.23095876,0.00039303573],"about_ca_topic_score_codex":0.0037554288,"about_ca_topic_score_gemma":0.026731037,"teacher_disagreement_score":0.21103911,"about_ca_system_score_codex":0.00009819743,"about_ca_system_score_gemma":0.0011701722,"threshold_uncertainty_score":0.9910286},"labels":[],"label_agreement":null},{"id":"W2193427311","doi":"10.1093/cid/civ811","title":"Reply to Musher","year":2015,"lang":"en","type":"letter","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre intégré universitaire de santé et de services sociaux de la Capitale-Nationale; Centres Intégré Universitaires de Santé et de Services Sociaux","funders":"","keywords":"Medicine","score_opus":0.07747384826531334,"score_gpt":0.3993692974152219,"score_spread":0.3218954491499086,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2193427311","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.012837468,0.00026203808,0.00004703074,0.94807285,0.00627564,0.0013493029,0.00023735498,0.001163567,0.029754752],"genre_scores_gemma":[0.0040434483,0.0000635458,0.0000047306407,0.96304065,0.020342426,0.00018754856,0.0002525849,0.00012509915,0.01193999],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99682015,0.00030456795,0.00095414167,0.0008721919,0.00051890226,0.0005300146],"domain_scores_gemma":[0.9964567,0.0005574811,0.00023001981,0.001185479,0.0005294653,0.0010408892],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00030394064,0.00045257274,0.0011463047,0.00030990105,0.0001384207,0.00006992032,0.00017065827,0.0010098327,0.00059882045],"category_scores_gemma":[0.003469279,0.00036829116,0.0009323586,0.00040576095,0.00026016947,0.00006321853,0.00013942916,0.0023836317,0.004051806],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014327513,0.00043517054,0.12857051,0.000126516,0.00027011623,0.0010479776,0.0000076664055,0.0000024675478,0.0000039946312,0.0000027633187,0.8677521,0.0017663946],"study_design_scores_gemma":[0.0009729045,0.0014008747,0.058643166,0.00019169947,0.0009687995,0.00006984064,0.0000036331749,0.0000022920249,9.389039e-7,0.00027670187,0.93706965,0.00039950587],"about_ca_topic_score_codex":0.00003126064,"about_ca_topic_score_gemma":0.000007905427,"teacher_disagreement_score":0.06992734,"about_ca_system_score_codex":0.00021120837,"about_ca_system_score_gemma":0.0009213946,"threshold_uncertainty_score":0.9999179},"labels":[],"label_agreement":null},{"id":"W2200181660","doi":"10.1080/21645515.2015.1039210","title":"Passive protection of mice against<i>Streptococcus pneumoniae</i>challenge by naturally occurring and vaccine-induced human anti-PhtD antibodies","year":2015,"lang":"en","type":"article","venue":"Human Vaccines & Immunotherapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"Sanofi","keywords":"Streptococcus pneumoniae; Antibody; Streptococcaceae; Antigen; Biology; Microbiology; Serotype; Immunogenicity; Recombinant DNA; Immunology; Virology; Biochemistry; Antibiotics","score_opus":0.04513554946500588,"score_gpt":0.3134401985435529,"score_spread":0.268304649078547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2200181660","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99445194,0.0024059983,0.000031855943,0.0008178206,0.0003101557,0.0011358034,0.000017891824,0.00022058933,0.00060792005],"genre_scores_gemma":[0.99856985,0.00029569157,0.000021002088,0.000542227,0.00020670325,0.00007323377,0.000029686897,0.000087304375,0.00017428],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9977949,0.0001270168,0.0007767544,0.0004994276,0.00034136936,0.00046048127],"domain_scores_gemma":[0.9982036,0.00004138825,0.00047538034,0.00056302955,0.0005295491,0.00018708373],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00023114632,0.00048025348,0.0007523549,0.00031638955,0.0004433679,0.000059338297,0.00020108125,0.00031104498,0.000018878778],"category_scores_gemma":[0.000041037103,0.0004168153,0.00018260267,0.00030438582,0.00007089996,0.0002529693,0.000103127364,0.00061728066,0.000010058286],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052693893,0.00039597615,0.03967209,0.00020784764,0.00037388277,0.00001636,0.0011517528,0.0000056865124,0.9537071,0.00010028852,0.0001878315,0.0041284766],"study_design_scores_gemma":[0.024688553,0.00812936,0.47010782,0.0018397558,0.0015090202,0.00045695,0.0035774256,0.00036059177,0.4278329,0.0010819876,0.057654377,0.0027612709],"about_ca_topic_score_codex":0.000092000984,"about_ca_topic_score_gemma":0.000058392572,"teacher_disagreement_score":0.5258742,"about_ca_system_score_codex":0.00011419881,"about_ca_system_score_gemma":0.000100310535,"threshold_uncertainty_score":0.99982834},"labels":[],"label_agreement":null},{"id":"W2200259553","doi":"10.1016/j.vaccine.2015.11.021","title":"Association of serotype with respiratory presentations of pneumococcal infection, Ontario, Canada, 2003–2011","year":2015,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; University Health Network; Provincial Laboratory of Public Health; Hospital for Sick Children; Public Health Ontario; Mount Sinai Hospital","funders":"Canadian Institutes of Health Research","keywords":"Serotype; Medicine; Streptococcus pneumoniae; Pneumococcal infections; Respiratory tract infections; Virology; Immunology; Respiratory system; Microbiology; Biology; Internal medicine; Antibiotics","score_opus":0.020316456437451596,"score_gpt":0.2566053952667469,"score_spread":0.23628893882929533,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2200259553","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933154,0.000032841337,0.00006300499,0.00063347706,0.00026811557,0.00032848015,0.000012284932,0.000025108395,0.005321308],"genre_scores_gemma":[0.9938536,0.0000038746584,0.000036437566,0.0002058699,0.00008944706,0.000022702381,0.000017015307,0.000014286506,0.005756711],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99900806,0.000053089632,0.00032889022,0.00013219226,0.00033028633,0.00014746151],"domain_scores_gemma":[0.99806535,0.00003561922,0.00026004424,0.00022397487,0.001257496,0.00015753559],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019067469,0.000103785205,0.0002715016,0.00013227151,0.00004515871,0.0000031780846,0.00003842918,0.00008241236,0.00028171498],"category_scores_gemma":[0.00020400138,0.00008264928,0.000032794404,0.0004138317,0.000009221768,0.00008237817,0.000015442476,0.00017043544,0.000009039956],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000086459666,0.00014482679,0.9478624,0.000033494667,0.00014411876,0.000005208854,0.00021617426,0.00013681245,0.007406469,0.00002898204,0.04389498,0.000040057977],"study_design_scores_gemma":[0.0016485768,0.00055947975,0.8956761,0.000024607785,0.00016884416,0.00001420238,0.00005797102,0.000010303596,0.0049348054,0.000008326853,0.09682378,0.000073042276],"about_ca_topic_score_codex":0.7117646,"about_ca_topic_score_gemma":0.95527595,"teacher_disagreement_score":0.24351141,"about_ca_system_score_codex":0.0003899155,"about_ca_system_score_gemma":0.003334822,"threshold_uncertainty_score":0.5915831},"labels":[],"label_agreement":null},{"id":"W2200570456","doi":"10.1016/s0140-6736(15)00066-5","title":"Corticosteroid therapy for pneumonia – Author's reply","year":2015,"lang":"en","type":"letter","venue":"The Lancet","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Community-acquired pneumonia; Randomized controlled trial; Pneumonia; Informed consent; Population; Internal medicine; Placebo; Procalcitonin; Intensive care medicine; Pediatrics; Physical therapy; Sepsis; Alternative medicine; Pathology","score_opus":0.0955805478120478,"score_gpt":0.34326150112733733,"score_spread":0.24768095331528953,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2200570456","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0048383954,0.0005197401,0.000042655167,0.9878023,0.0013775678,0.0011919715,0.00016503435,0.00020862454,0.0038537064],"genre_scores_gemma":[0.0016387115,0.00014338539,0.000043239757,0.95663774,0.025416682,0.00030720484,0.00019625481,0.00008377008,0.015532994],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.998506,0.00010485641,0.00029411394,0.00031822818,0.00031299194,0.00046380173],"domain_scores_gemma":[0.998118,0.00017165254,0.00018882747,0.0012483553,0.00019537019,0.00007783478],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042160653,0.00026971643,0.0007705169,0.00007468803,0.0001560747,0.000053454554,0.00030597212,0.00039186463,0.000049345013],"category_scores_gemma":[0.00015176016,0.00015106877,0.00022531197,0.00011543118,0.000116270574,0.000030471261,0.000034746943,0.0013238428,0.00015474553],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010854425,0.00002544875,0.0005132055,0.00009200605,0.0001630044,0.000073430754,0.000109201,6.0088007e-7,0.0029801843,0.000008752005,0.99445033,0.0014752899],"study_design_scores_gemma":[0.0017785255,0.0005253878,0.0020524464,0.00009047986,0.00015454066,0.0002383669,0.000010277233,0.000014053547,0.00010525997,0.0004785531,0.99436665,0.00018547486],"about_ca_topic_score_codex":0.000011869271,"about_ca_topic_score_gemma":0.0000026121734,"teacher_disagreement_score":0.031164547,"about_ca_system_score_codex":0.0000808527,"about_ca_system_score_gemma":0.00022892172,"threshold_uncertainty_score":0.6160406},"labels":[],"label_agreement":null},{"id":"W2200805166","doi":"10.1371/journal.pone.0137592","title":"Biomarkers of Host Response Predict Primary End-Point Radiological Pneumonia in Tanzanian Children with Clinical Pneumonia: A Prospective Cohort Study","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Toronto General Hospital; University Health Network","funders":"Canadian Institutes of Health Research; Bill and Melinda Gates Foundation; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Procalcitonin; Medicine; Pneumonia; Biomarker; Prospective cohort study; Receiver operating characteristic; Internal medicine; Logistic regression; Clinical endpoint; Sepsis; Biology; Clinical trial","score_opus":0.04507380752484256,"score_gpt":0.28753636369661756,"score_spread":0.242462556171775,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2200805166","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9932181,0.000071139104,0.000006522929,0.00085756666,0.000059801685,0.00434235,0.000048354454,0.00015768399,0.0012384547],"genre_scores_gemma":[0.99882776,0.000035721478,0.00023832357,0.00025192992,0.00014036699,0.00034273398,0.000019584604,0.000046568664,0.00009701432],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9960578,0.0009125392,0.0009429299,0.0007348128,0.0009193594,0.00043257265],"domain_scores_gemma":[0.99789053,0.000353518,0.00027371364,0.0006921587,0.00031907376,0.00047101773],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0027718036,0.00033154152,0.0012797243,0.00034394886,0.000076658995,0.000015994996,0.0001926705,0.00025593187,0.000031408737],"category_scores_gemma":[0.0011988045,0.00023684817,0.00013604148,0.00070463144,0.0005272756,0.00012141811,0.00011964887,0.0007644108,0.00002858024],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006205782,0.021301923,0.9287242,0.000030150495,0.0021086452,0.0002875962,0.0005009666,0.000002102299,0.040730465,0.0000036869603,0.000033688102,0.000070756054],"study_design_scores_gemma":[0.0070518055,0.018376663,0.97199917,0.00025262905,0.0007945887,0.00019081116,0.00036841945,0.000026243328,0.0006642734,0.000011053015,0.000014767836,0.0002496021],"about_ca_topic_score_codex":0.000077732584,"about_ca_topic_score_gemma":0.00007450535,"teacher_disagreement_score":0.043274906,"about_ca_system_score_codex":0.00037159584,"about_ca_system_score_gemma":0.00072194944,"threshold_uncertainty_score":0.9658388},"labels":[],"label_agreement":null},{"id":"W2203384995","doi":"10.1155/2016/3605834","title":"A Retrospective Study of the Clinical Burden of Hospitalized All-Cause and Pneumococcal Pneumonia in Canada","year":2016,"lang":"en","type":"article","venue":"Canadian Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Pfizer (Canada); Nova Scotia Health Authority; Izaak Walton Killam Health Centre; Dalhousie University","funders":"Université de Montréal; Dalhousie University; CHEO Research Institute; Pfizer; McMaster University; McGill University; Dartmouth College; McGill University Health Centre","keywords":"Medicine; Pneumonia; Pneumococcal pneumonia; Case fatality rate; Incidence (geometry); Streptococcus pneumoniae; Pediatrics; Logistic regression; Pneumococcal disease; Population; Demography; Internal medicine; Epidemiology; Environmental health; Antibiotics","score_opus":0.035437772752117826,"score_gpt":0.3066225673931608,"score_spread":0.27118479464104295,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2203384995","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969612,0.00010283844,6.0978914e-7,0.0016871901,0.00044230008,0.00048220876,0.000029966252,0.0000036215113,0.00029010244],"genre_scores_gemma":[0.9992066,0.000039435447,0.0000016264622,0.00052112655,0.00015429966,0.000006190912,9.5687106e-8,0.000019766492,0.000050861057],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99776995,0.00036915197,0.00089606846,0.00023620803,0.0003695676,0.0003590703],"domain_scores_gemma":[0.99819595,0.00007962037,0.0003514079,0.00039057128,0.00024160971,0.0007408704],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00063994055,0.00016673096,0.0005328126,0.0002830682,0.0001210195,0.000010535925,0.00019876858,0.000110880734,0.00006677539],"category_scores_gemma":[0.00051008095,0.00009607461,0.00011595736,0.00028929012,0.00022135815,0.000076730146,0.000042072916,0.0005339642,0.000001266673],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038624923,0.000082621365,0.9826655,0.0000095726755,0.00021292172,0.00035058157,0.00024629277,0.0000042223255,0.015362019,0.000023362516,0.00018261303,0.00082168414],"study_design_scores_gemma":[0.0031276636,0.00086196134,0.9891772,0.00017987617,0.0001351701,0.00019747426,0.0008035544,0.0000030139424,0.000084481144,0.000039230403,0.0052776453,0.00011271689],"about_ca_topic_score_codex":0.672324,"about_ca_topic_score_gemma":0.98348725,"teacher_disagreement_score":0.31116322,"about_ca_system_score_codex":0.0011838736,"about_ca_system_score_gemma":0.0084834,"threshold_uncertainty_score":0.9971376},"labels":[],"label_agreement":null},{"id":"W2206277444","doi":"10.1159/000358239","title":"Single Immunoglobulin Interleukin-1 Receptor-Related Molecule Impairs Host Defense during Pneumonia and Sepsis Caused by &lt;b&gt;&lt;i&gt;Streptococcus Pneumoniae&lt;/i&gt;&lt;/b&gt;","year":2014,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Streptococcus pneumoniae; Sepsis; Immunology; Microbiology; Pneumonia; Receptor; Antibody; Pneumococcal pneumonia; Interleukin; Biology; Medicine; Cytokine; Antibiotics; Internal medicine; Biochemistry","score_opus":0.00900468016201434,"score_gpt":0.23685992705514203,"score_spread":0.2278552468931277,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2206277444","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.990363,0.0027987652,0.00006958653,0.0020042746,0.0012815548,0.00074370496,0.000092925016,0.00023082987,0.002415374],"genre_scores_gemma":[0.996715,0.0012138058,0.00008627389,0.0004414064,0.0002822686,0.000034452365,0.000048501544,0.00018788104,0.0009904255],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99339753,0.00117686,0.0025265864,0.0006579657,0.0010131522,0.0012279074],"domain_scores_gemma":[0.99434125,0.00044560415,0.001897073,0.001259644,0.0011064599,0.00094996666],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0019210981,0.001002438,0.0017157086,0.0010280045,0.0011098194,0.00027943528,0.00072076434,0.0007691473,0.0002965597],"category_scores_gemma":[0.0011933604,0.0008830756,0.00083613576,0.0011683763,0.00065798307,0.0006974244,0.00042603747,0.0024067378,0.00013746465],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003743263,0.0011664354,0.0065451744,0.00017196017,0.0009775871,0.00025010807,0.0012931012,0.000058655205,0.98581874,0.000043454915,0.0020162286,0.0012842532],"study_design_scores_gemma":[0.01920253,0.00913298,0.35900122,0.0037012084,0.0019632278,0.0044676354,0.000621475,0.0005318517,0.42336592,0.00017724748,0.17510375,0.0027309484],"about_ca_topic_score_codex":0.00003280957,"about_ca_topic_score_gemma":0.000082347186,"teacher_disagreement_score":0.5624528,"about_ca_system_score_codex":0.00096518325,"about_ca_system_score_gemma":0.000398622,"threshold_uncertainty_score":0.99989474},"labels":[],"label_agreement":null},{"id":"W2213255854","doi":"10.1155/2014/757963","title":"Real‐Time Polymerase Chain Reaction for Microbiological Diagnosis of Parapneumonic Effusions in Canadian Children","year":2014,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Ottawa; McMaster University","funders":"Physicians' Services Incorporated Foundation","keywords":"Polymerase chain reaction; Medicine; Biology; Genetics; Gene","score_opus":0.004464306477098898,"score_gpt":0.23214789276506154,"score_spread":0.22768358628796265,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2213255854","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954394,0.00065607514,0.000009439134,0.002881416,0.00031750047,0.0003062492,0.00023943774,0.000008460741,0.00014200812],"genre_scores_gemma":[0.99762017,0.0007263814,0.0000068258914,0.0012943815,0.00023002549,0.000021248696,0.00006776664,0.000014312755,0.000018918892],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985895,0.00016089961,0.00051817263,0.00019167917,0.000045350604,0.00049438135],"domain_scores_gemma":[0.99721134,0.00028322294,0.00018946464,0.00012358328,0.0001396811,0.002052739],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037908598,0.00016221346,0.0005429057,0.0007012804,0.00015573025,0.000008117054,0.0000918414,0.0003379999,0.00018551075],"category_scores_gemma":[0.0012454134,0.00012669856,0.00020413185,0.00019887378,0.000377915,0.00003458016,0.000010297023,0.0002991679,0.0000042538945],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037402307,0.000139517,0.92665654,0.00003819866,0.00011379753,0.00006841566,0.00004546406,0.000004209564,0.06681456,0.00017933184,0.000907201,0.0049953936],"study_design_scores_gemma":[0.0034195327,0.002005631,0.95944065,0.00037246078,0.0002774623,0.0044542183,0.000024743342,0.00003376721,0.00056967605,0.00013642435,0.029034983,0.0002304275],"about_ca_topic_score_codex":0.1984913,"about_ca_topic_score_gemma":0.42726552,"teacher_disagreement_score":0.22877422,"about_ca_system_score_codex":0.00024562504,"about_ca_system_score_gemma":0.002674253,"threshold_uncertainty_score":0.806846},"labels":[],"label_agreement":null},{"id":"W2213643504","doi":"10.1155/2013/385652","title":"Respiratory Infection and Otitis Media Visits in Relation to Pneumococcal Conjugate Vaccine Use in Saskatchewan","year":2013,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Institut National de Santé Publique du Québec; Centre hospitalier universitaire de Québec; GlaxoSmithKline (Canada); Saskatchewan Health; Université Laval; University of Saskatchewan","funders":"Institut National de Santé Publique du Québec; GlaxoSmithKline","keywords":"Medicine; Pneumococcal conjugate vaccine; Acute otitis media; Vaccination; Respiratory tract infections; Pediatrics; Otitis; Streptococcus pneumoniae; Demography; Internal medicine; Respiratory system; Antibiotics; Surgery; Virology","score_opus":0.00781643570306922,"score_gpt":0.2317980742515513,"score_spread":0.22398163854848208,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2213643504","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967529,0.00051709317,0.000027447857,0.0018604969,0.00045469071,0.00031757026,0.000017214397,0.000010093406,0.0000424894],"genre_scores_gemma":[0.996121,0.00017279306,0.0000063499315,0.0034707512,0.00018119803,0.000014358282,0.0000068552754,0.000013555666,0.000013142631],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99872065,0.00016105881,0.00052905595,0.00019665144,0.00006664319,0.00032597154],"domain_scores_gemma":[0.9978634,0.00020863824,0.00011059571,0.000090102374,0.00015845025,0.0015687972],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024620505,0.00015164886,0.00040807077,0.00091475353,0.000078138546,0.0000335538,0.00003807646,0.000267279,0.00022996104],"category_scores_gemma":[0.001406292,0.00012749992,0.000059429713,0.00030131207,0.00012358492,0.00019125488,0.000018775696,0.0004774693,0.000012218786],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025321171,0.000060228904,0.97713447,0.000030483488,0.000027070333,0.00033192805,0.0002694656,0.000009557923,0.015114216,0.000027741791,0.00038015263,0.0065893508],"study_design_scores_gemma":[0.0020926693,0.0006297755,0.98803467,0.00030033948,0.000042533396,0.0017640204,0.00009457844,0.000009924035,0.00003524103,0.00010321936,0.006771926,0.00012108561],"about_ca_topic_score_codex":0.015603539,"about_ca_topic_score_gemma":0.23812124,"teacher_disagreement_score":0.2225177,"about_ca_system_score_codex":0.00024641634,"about_ca_system_score_gemma":0.0011601163,"threshold_uncertainty_score":0.99095166},"labels":[],"label_agreement":null},{"id":"W2214795005","doi":"10.1016/j.diagmicrobio.2015.11.014","title":"Variability of β-lactam susceptibility testing for Streptococcus pneumoniae using 4 commercial test methods and broth microdilution","year":2015,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Health Services; Provincial Laboratory of Public Health; University of Alberta","funders":"","keywords":"Broth microdilution; Streptococcus pneumoniae; Microbiology; Lactam; Streptococcaceae; Biology; Minimum inhibitory concentration; Chemistry; Antibiotics; Stereochemistry","score_opus":0.04404569747340987,"score_gpt":0.3517016433696579,"score_spread":0.30765594589624806,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2214795005","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9938174,0.00023589355,0.0038903106,0.00016102413,0.00023837088,0.0011947964,0.00030480357,0.00006489983,0.00009252915],"genre_scores_gemma":[0.9983757,0.00001585903,0.0010510222,0.00029567486,0.00011301595,0.00007257555,0.00005554547,0.000015641535,0.0000049699606],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985508,0.000343785,0.00039003883,0.00041615087,0.000032429907,0.00026683416],"domain_scores_gemma":[0.9947323,0.004112513,0.00016922782,0.0002556772,0.00036604275,0.00036422868],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0008880263,0.00020694362,0.00042713276,0.00010724166,0.00021862294,0.000013666912,0.000038127542,0.00017851513,0.00001058447],"category_scores_gemma":[0.019373387,0.00018274544,0.00008613943,0.00016835409,0.00058101094,0.000072429684,0.000070856695,0.00018350172,0.0000010783955],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048081794,0.00044963125,0.67314976,0.00020225221,0.000033366618,0.0000028395723,0.00005840289,0.000011583925,0.32440677,0.000040790805,0.00005150399,0.0015450013],"study_design_scores_gemma":[0.0027001959,0.0015667875,0.98771477,0.0001268802,0.0006383618,0.00016831481,0.000046404068,0.0005696263,0.0039983247,0.0011855575,0.0010107524,0.0002740507],"about_ca_topic_score_codex":0.00006789709,"about_ca_topic_score_gemma":0.000030768213,"teacher_disagreement_score":0.32040843,"about_ca_system_score_codex":0.00009180818,"about_ca_system_score_gemma":0.00034646652,"threshold_uncertainty_score":0.98888683},"labels":[],"label_agreement":null},{"id":"W2220164129","doi":"10.1093/cid/civ803","title":"Invasive Pneumococcal Disease Among Immunocompromised Persons: Implications for Vaccination Programs","year":2015,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":135,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; HalTech; St. Michael's Hospital; Hospital for Sick Children; The Scarborough Hospital; Southlake Regional Health Center; St Joseph's Health Centre; Toronto East General Hospital; University Health Network; York Central Hospital; University of Toronto","funders":"Canadian Institutes of Health Research; Centers for Disease Control and Prevention; Bayer HealthCare; Gilead Sciences; ViiV Healthcare; GlaxoSmithKline; Pfizer; Bristol-Myers Squibb; Abbott Laboratories","keywords":"Medicine; Pneumococcal disease; Vaccination; Immunology; Disease; Pneumococcal infections; Virology; Streptococcus pneumoniae; Internal medicine; Antibiotics; Microbiology","score_opus":0.10405469759263833,"score_gpt":0.3980776521378243,"score_spread":0.294022954545186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2220164129","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9899816,0.00028864504,0.00089684455,0.0025606602,0.0007034666,0.0034862456,0.0001318239,0.00066477933,0.0012859261],"genre_scores_gemma":[0.9951334,0.00006196263,0.000019918016,0.0009032036,0.00073764595,0.0024046656,0.00036548966,0.000050480918,0.00032324088],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9980858,0.00016075696,0.00067472516,0.0005377359,0.00017056892,0.0003703948],"domain_scores_gemma":[0.99654585,0.00056673994,0.00023697707,0.000554729,0.00065103575,0.0014446564],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029100233,0.00025491032,0.00047508342,0.00015099157,0.00032237693,0.000087189146,0.00012572248,0.00017339086,0.000033221182],"category_scores_gemma":[0.003531615,0.00022048809,0.0006601834,0.0003434621,0.00025035857,0.00023087762,0.000060390514,0.00026145077,0.000065290726],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012574457,0.002856044,0.98490286,0.00011057094,0.00018280836,0.000008560454,0.000038602437,0.000018292567,0.0002477902,0.00050826924,0.0018757099,0.0091247605],"study_design_scores_gemma":[0.0046242876,0.0013127725,0.98152214,0.00008243893,0.00077175495,0.0000089520145,0.00007932828,0.000187778,0.000011408201,0.0038817525,0.007258115,0.00025929208],"about_ca_topic_score_codex":0.000009847731,"about_ca_topic_score_gemma":0.000024110303,"teacher_disagreement_score":0.008865468,"about_ca_system_score_codex":0.00018078886,"about_ca_system_score_gemma":0.0009509487,"threshold_uncertainty_score":0.8991243},"labels":[],"label_agreement":null},{"id":"W2229015638","doi":"10.1093/gerona/glv085","title":"Salivary Functional Antibody Secretion Is Reduced in Older Adults: A Potential Mechanism of Increased Susceptibility to Bacterial Infection in the Elderly","year":2015,"lang":"en","type":"article","venue":"The Journals of Gerontology Series A","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Economic and Social Research Council; University of Birmingham","keywords":"Saliva; Antibody; Immunology; Medicine; Vaccination; Diphtheria; Immunity; Antigen; Immune system; Internal medicine","score_opus":0.03693286487387345,"score_gpt":0.32087515703940933,"score_spread":0.2839422921655359,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2229015638","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99168104,0.00006449314,0.0004822664,0.0064991605,0.0005398635,0.0005566599,0.000013102388,0.0000120883815,0.00015131],"genre_scores_gemma":[0.99920714,0.000062782055,0.00003708828,0.0004192123,0.00020696905,0.000024338524,0.0000150521255,0.000009014377,0.00001841646],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9981133,0.00061805366,0.0006052031,0.0001710079,0.00028398528,0.00020848133],"domain_scores_gemma":[0.9989911,0.00007550261,0.00026811427,0.00029724845,0.00028240378,0.00008565658],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014481723,0.00013669327,0.00038886614,0.00024163844,0.00007371244,0.000010512358,0.00010778346,0.00017696092,0.00023228837],"category_scores_gemma":[0.00029845897,0.00008431167,0.00011281197,0.0003294595,0.00015266612,0.00017969387,0.00003676781,0.0003335611,0.0000040959612],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007182987,0.0009120902,0.084602974,0.0000912673,0.000114755,0.000029737697,0.0077539226,0.000047078203,0.89764905,0.0002640656,0.0006394968,0.0007125951],"study_design_scores_gemma":[0.0031112107,0.00269188,0.9799708,0.00022878635,0.00009467493,0.00086459,0.002736553,0.000039367867,0.009000089,0.0010236318,0.00013873138,0.00009967354],"about_ca_topic_score_codex":0.0019491132,"about_ca_topic_score_gemma":0.0021335648,"teacher_disagreement_score":0.89536786,"about_ca_system_score_codex":0.0000836949,"about_ca_system_score_gemma":0.00024272437,"threshold_uncertainty_score":0.34381303},"labels":[],"label_agreement":null},{"id":"W2230712298","doi":"10.1016/j.clim.2015.12.007","title":"IRAK-4 deficiency as a cause for familial fatal invasive infection by Streptococcus pneumoniae","year":2015,"lang":"en","type":"letter","venue":"Clinical Immunology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; BC Centre for Disease Control; BC Children's Hospital; University of British Columbia","funders":"","keywords":"Streptococcus pneumoniae; Meningitis; Primary immunodeficiency; Immunodeficiency; Medicine; Immunology; Pediatrics; Biology; Microbiology; Immune system","score_opus":0.07923668277737593,"score_gpt":0.3857930463628115,"score_spread":0.30655636358543553,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2230712298","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.65230936,0.0013992469,0.00028409556,0.32090265,0.014615928,0.0050241197,0.0009503707,0.00066834036,0.0038459066],"genre_scores_gemma":[0.04058577,0.0026555317,0.00003738292,0.916419,0.0147226835,0.0022573797,0.0054613487,0.0003976926,0.017463204],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9959123,0.00043366232,0.0014412439,0.0010596133,0.0003117948,0.00084134616],"domain_scores_gemma":[0.99611187,0.0014332845,0.0006090602,0.000984792,0.0006506469,0.00021035896],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0005090325,0.0005849873,0.0014028815,0.00031227298,0.00024726687,0.00004027417,0.00029192475,0.0038638886,0.00012175597],"category_scores_gemma":[0.0043441905,0.0005058226,0.0008289158,0.00027443536,0.0009955795,0.00010888893,0.00019328152,0.0042721955,0.00094537577],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011588623,0.000571802,0.015603329,0.00015548657,0.00082882243,0.0004047437,0.00005307292,7.2830676e-7,0.008383498,0.000021264417,0.9713431,0.0025182683],"study_design_scores_gemma":[0.003427464,0.0067637623,0.0057694647,0.00012886192,0.0010270908,0.000327057,0.000026614936,0.0000049081777,0.00027350092,0.00038068788,0.98136306,0.00050755293],"about_ca_topic_score_codex":0.0001367574,"about_ca_topic_score_gemma":0.00006247368,"teacher_disagreement_score":0.6117236,"about_ca_system_score_codex":0.00029189067,"about_ca_system_score_gemma":0.0016607674,"threshold_uncertainty_score":0.9998325},"labels":[],"label_agreement":null},{"id":"W2234138237","doi":"10.1155/2014/510373","title":"How Many Individuals with Asthma Need to Be Vaccinated to Prevent One Case of Invasive Pneumococcal Disease?","year":2014,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University; Vancouver Infectious Diseases Centre; Montreal Children's Hospital; Institut National de Santé Publique du Québec; McGill University Health Centre; Ste. Anne's Hospital","funders":"","keywords":"Pneumococcal disease; Asthma; Disease; Medicine; Immunology; Pneumococcal infections; Vaccination; Streptococcus pneumoniae; Intensive care medicine; Biology; Microbiology; Internal medicine","score_opus":0.007174143263216756,"score_gpt":0.2295356161982208,"score_spread":0.22236147293500405,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2234138237","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9768668,0.00026322197,0.00034769674,0.02164788,0.000229629,0.00041183102,0.00017288481,0.000011038441,0.000049060913],"genre_scores_gemma":[0.9936597,0.00003349662,0.000027024507,0.005955856,0.00022439843,0.000015621112,0.000014659171,0.000019683961,0.000049571496],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987331,0.00016814044,0.00038059163,0.00021891744,0.00010999137,0.00038924522],"domain_scores_gemma":[0.99447346,0.00016290223,0.00018333,0.00017601444,0.0003536312,0.0046506883],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022031271,0.00019400955,0.00056728447,0.0005864165,0.000143291,0.000027782155,0.00010149286,0.00015084907,0.00016095463],"category_scores_gemma":[0.0016296444,0.00014196294,0.00013044667,0.00030384737,0.0002064706,0.000053104268,0.000032543798,0.00029318998,0.0000033925828],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005272738,0.0015552668,0.8743464,0.0007148781,0.0017060671,0.013162996,0.0011438765,0.000078633224,0.080913156,0.0010684981,0.00659533,0.018187644],"study_design_scores_gemma":[0.008112539,0.018126847,0.72496927,0.0021377183,0.0017638692,0.07846393,0.0009756359,0.000013676211,0.0021367874,0.00026559774,0.16220522,0.000828926],"about_ca_topic_score_codex":0.00074666593,"about_ca_topic_score_gemma":0.011053035,"teacher_disagreement_score":0.15560989,"about_ca_system_score_codex":0.00012609382,"about_ca_system_score_gemma":0.0020822997,"threshold_uncertainty_score":0.6167853},"labels":[],"label_agreement":null},{"id":"W2236263845","doi":"10.1155/2014/370964","title":"Susceptibility of Clinical <i>Moraxella catarrhalis</i> Isolates in British Columbia to Six Empirically Prescribed Antibiotic Agents","year":2014,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Royal Inland Hospital; Kelowna General Hospital; Thompson Rivers University","funders":"Thompson Rivers University; Society for Applied Microbiology","keywords":"Cefuroxime; Moraxella catarrhalis; Microbiology; Amoxicillin; Levofloxacin; Antibiotics; Ciprofloxacin; Clarithromycin; Moraxella (Branhamella) catarrhalis; Medicine; Chronic bronchitis; Clavulanic acid; Biology; Internal medicine; Streptococcus pneumoniae","score_opus":0.012828529318320974,"score_gpt":0.2898704300825675,"score_spread":0.27704190076424656,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2236263845","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975261,0.00036632398,0.000036689315,0.0008422411,0.00078246533,0.00021297963,0.00012190648,0.000006933763,0.00010436402],"genre_scores_gemma":[0.9961871,0.00014990431,0.000012629746,0.003335867,0.00024917186,0.000001373539,0.000016685733,0.000012291374,0.000034966528],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99805194,0.0003156027,0.0009615071,0.00024055551,0.00007902208,0.00035136167],"domain_scores_gemma":[0.9969572,0.00024265166,0.00021627353,0.00016267927,0.00028612235,0.002135102],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006705872,0.00011229704,0.0007678088,0.00017723364,0.000085193016,0.000034057342,0.000119759134,0.00028517074,0.0005892345],"category_scores_gemma":[0.0035029573,0.000119923745,0.0002566064,0.00022701824,0.00052591955,0.000038814036,0.000028562325,0.00042509343,0.0000051373254],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028552975,0.00028173815,0.98239213,0.0000769226,0.00008788433,0.00029621393,0.000037271824,0.0000050957924,0.0016719004,0.0000020947925,0.009541122,0.0055790786],"study_design_scores_gemma":[0.001972776,0.0020966863,0.9730253,0.00036514376,0.00012120976,0.0026933115,0.000034786517,0.000018077906,0.000010502341,0.000039396287,0.019506551,0.00011623864],"about_ca_topic_score_codex":0.06627402,"about_ca_topic_score_gemma":0.67368776,"teacher_disagreement_score":0.60741377,"about_ca_system_score_codex":0.00009373681,"about_ca_system_score_gemma":0.0019869383,"threshold_uncertainty_score":0.93994373},"labels":[],"label_agreement":null},{"id":"W2239153743","doi":"10.1136/bmjqs-2015-005126","title":"Response to: ‘Recast the debate about preventable readmissions’ by Sutherland et al","year":2016,"lang":"en","type":"letter","venue":"BMJ Quality & Safety","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Medicine; Nursing","score_opus":0.04610161971112253,"score_gpt":0.3948010950139061,"score_spread":0.34869947530278356,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2239153743","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004549664,0.00016768758,0.00037187463,0.985337,0.0007839895,0.0018076925,0.0013973325,0.00015924971,0.0054254634],"genre_scores_gemma":[0.000935052,0.00018412487,0.000026814969,0.8871412,0.0013139809,0.00022701324,0.00031094372,0.00009358386,0.10976726],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9932636,0.0032884097,0.0012425749,0.00069861236,0.00079286256,0.0007139579],"domain_scores_gemma":[0.9953979,0.0022332536,0.0003732996,0.001469003,0.00018446798,0.00034203785],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.005804399,0.00049295387,0.00079117966,0.00012235483,0.00047985668,0.000061182705,0.0003516897,0.0006625881,0.0009326701],"category_scores_gemma":[0.0015523195,0.00026526809,0.00040677382,0.0002573131,0.0001816684,0.00008478659,0.0001621186,0.0017412989,0.00077517045],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016668072,0.0000685862,0.0004842057,0.00007734249,0.0001789718,0.00014139208,0.00028433715,5.851119e-7,0.015833313,0.0000143207,0.9790421,0.0022080285],"study_design_scores_gemma":[0.0011744993,0.00028198093,0.004259652,0.000792095,0.00012363626,0.00022251565,0.000062020285,8.022773e-7,0.00019447168,0.000054290325,0.99241245,0.00042158554],"about_ca_topic_score_codex":0.0002272088,"about_ca_topic_score_gemma":0.000038366903,"teacher_disagreement_score":0.10434179,"about_ca_system_score_codex":0.00028294785,"about_ca_system_score_gemma":0.001138976,"threshold_uncertainty_score":0.9999806},"labels":[],"label_agreement":null},{"id":"W2261407646","doi":"10.82308/30324","title":"Acute otitis media in Quebec's children : antibiotic prescribing patterns and outcomes","year":2003,"lang":"en","type":"article","venue":"eScholarship@McGill (McGill)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"GlaxoSmithKline; Pfizer; Bristol-Myers Squibb Canada; Bristol-Myers Squibb; Pfizer Canada; Abbott Laboratories","keywords":"Medicine; Amoxicillin; Acute otitis media; Antibiotics; Otitis; Cohort; Pediatrics; Intensive care medicine; Cohort study; Internal medicine; Surgery","score_opus":0.013449009020528117,"score_gpt":0.24020527841785919,"score_spread":0.22675626939733107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2261407646","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99107826,0.00008529411,5.001546e-7,0.00016272986,0.00044642657,0.0005725133,0.000321,0.00017309927,0.007160169],"genre_scores_gemma":[0.9976729,0.00020542038,0.00010678567,0.0011185781,0.00002513622,0.000019240731,0.000033128446,0.000075617805,0.0007431552],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9975011,0.00026137836,0.0005526958,0.0006630568,0.00038398206,0.0006377862],"domain_scores_gemma":[0.99867725,0.00017589431,0.00013182308,0.0005102239,0.00008582493,0.00041898823],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00041167237,0.0004130155,0.0006315033,0.00042308992,0.00045032136,0.00005900588,0.00014438634,0.000296488,0.0001344795],"category_scores_gemma":[0.0006635784,0.0003679964,0.00017966605,0.00041123832,0.00010584732,0.00052663544,0.00009916733,0.0008450887,0.00008703053],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021236761,0.0003497748,0.928719,0.00007514721,0.00030645894,0.00038047487,0.000019376084,0.0000053352173,0.037795905,0.010551749,0.0000030966348,0.021772455],"study_design_scores_gemma":[0.00266112,0.00014915597,0.96744126,0.0002847691,0.00025980052,0.000510748,0.00007562554,0.000003940572,0.022166386,0.0005611755,0.005403921,0.0004820707],"about_ca_topic_score_codex":0.0022718676,"about_ca_topic_score_gemma":0.014219172,"teacher_disagreement_score":0.038722295,"about_ca_system_score_codex":0.0002956562,"about_ca_system_score_gemma":0.000047644167,"threshold_uncertainty_score":0.9998772},"labels":[],"label_agreement":null},{"id":"W2265404951","doi":"10.13130/b-alcala-franco_phd2015-12-09","title":"NOVEL APPROACHES FOR PREVENTION/ERADICATION OF PSEUDOMONAS AERUGINOSA LUNG INFECTIONS IN MURINE MODELS","year":2015,"lang":"en","type":"dissertation","venue":"Archivio Istituzionale della Ricerca (Universita Degli Studi Di Milano)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; Ministero della Salute; Cystic Fibrosis Canada","keywords":"Pseudomonas aeruginosa; Microbiology; Lung; Medicine; Biology; Bacteria; Internal medicine; Genetics","score_opus":0.059605431332658436,"score_gpt":0.2944705832181308,"score_spread":0.23486515188547236,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2265404951","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.847781,0.001863154,0.021833856,0.0005548951,0.0009974963,0.0045853336,0.0009186232,0.00017943242,0.121286236],"genre_scores_gemma":[0.97560924,0.0005190236,0.0019195047,0.000042254742,0.00023256139,0.00029671533,0.005799541,0.00008546291,0.015495694],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"observational","domain_scores_codex":[0.997615,0.000075443175,0.00062576024,0.0007131257,0.00055241486,0.0004182954],"domain_scores_gemma":[0.99804986,0.00024241892,0.00046859385,0.0004861784,0.00051610725,0.00023683121],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00026448836,0.00046481186,0.00083136954,0.0012696498,0.00034625654,0.000017274158,0.00025439684,0.0003234936,0.000033192948],"category_scores_gemma":[0.000097826,0.0005045357,0.0004498442,0.00082041946,0.00015105621,0.00026797078,0.00008084555,0.0005011545,0.000011844048],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009666576,0.05688779,0.16071863,0.025274431,0.018008893,0.00044089483,0.05145907,0.13565668,0.0807368,0.37614766,0.038807254,0.04619533],"study_design_scores_gemma":[0.047158368,0.0052269497,0.67427045,0.0074396823,0.0146707725,0.001018997,0.02883658,0.13718946,0.0010230473,0.028436607,0.048887093,0.005841959],"about_ca_topic_score_codex":0.0001961463,"about_ca_topic_score_gemma":0.0020100372,"teacher_disagreement_score":0.51355183,"about_ca_system_score_codex":0.0004918036,"about_ca_system_score_gemma":0.00093892135,"threshold_uncertainty_score":0.9997406},"labels":[],"label_agreement":null},{"id":"W2268368058","doi":"10.1016/s1473-3099(16)00017-7","title":"Efficacy and safety of oral solithromycin versus oral moxifloxacin for treatment of community-acquired bacterial pneumonia: a global, double-blind, multicentre, randomised, active-controlled, non-inferiority trial (SOLITAIRE-ORAL)","year":2016,"lang":"en","type":"article","venue":"The Lancet Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":101,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Moxifloxacin; Placebo; Internal medicine; Adverse effect; Randomized controlled trial; Community-acquired pneumonia; Pneumonia; Clinical trial; Sputum; Physical therapy; Tuberculosis; Alternative medicine","score_opus":0.06213762095525918,"score_gpt":0.35608771696415825,"score_spread":0.2939500960088991,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2268368058","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9894698,0.00012902298,0.00016196175,0.0007513959,0.000935175,0.007196544,0.0009316993,0.00013536935,0.0002889824],"genre_scores_gemma":[0.99804574,0.0004443063,0.000022887642,0.00006992821,0.0005357073,0.00075845706,0.00006182457,0.000032171054,0.000028959486],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.99756694,0.00063401886,0.0007596236,0.00028292858,0.00024371002,0.00051278353],"domain_scores_gemma":[0.9966296,0.0016027557,0.00047095894,0.0007587071,0.00026526803,0.0002726913],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039960796,0.0004315346,0.00206217,0.00010268194,0.0004675961,0.000033156648,0.00016952136,0.0001691087,0.000050944967],"category_scores_gemma":[0.00055688474,0.00023727643,0.00058849325,0.0002299245,0.0005817464,0.00017524367,0.00007824839,0.00009335869,0.0000051266693],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.9490318,0.004084352,0.016685754,0.000154351,0.0018904496,0.0000044361673,0.00035101155,0.00001376664,0.017182667,0.00012985506,0.00006931758,0.010402275],"study_design_scores_gemma":[0.91269845,0.007919267,0.072788656,0.00012111454,0.0028479411,0.000013467659,0.00012790531,0.000031198797,0.0017275765,0.00012939273,0.0013506126,0.00024440928],"about_ca_topic_score_codex":0.0006856761,"about_ca_topic_score_gemma":0.0006237984,"teacher_disagreement_score":0.0561029,"about_ca_system_score_codex":0.00035385543,"about_ca_system_score_gemma":0.00033808764,"threshold_uncertainty_score":0.9675852},"labels":[],"label_agreement":null},{"id":"W2274903254","doi":"10.1155/2004/970828","title":"Inpatient Care of Community‐Acquired Pneumonia: The Effect of Antimicrobial Guidelines on Clinical Outcomes and Drug Costs in Canadian Teaching Hospitals","year":2004,"lang":"en","type":"article","venue":"Canadian Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University Health Network; University of Toronto","funders":"Canadian Institutes of Health Research; University of Toronto; Canadian Thoracic Society","keywords":"Medicine; Guideline; Community-acquired pneumonia; Cohort; Pneumonia; Odds ratio; Retrospective cohort study; Antibiotics; Internal medicine; Cohort study; Pneumonia severity index; Intensive care medicine; Emergency medicine","score_opus":0.02855829098200935,"score_gpt":0.34509854560454156,"score_spread":0.3165402546225322,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2274903254","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937333,0.00031885793,9.187416e-7,0.0041871443,0.0005229068,0.00048449243,0.000067820874,0.0000073496435,0.00067723665],"genre_scores_gemma":[0.9933931,0.000027639859,0.000010698381,0.006389678,0.00013051953,0.000006827926,0.000004239165,0.000027219112,0.000010069005],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9971466,0.000939911,0.0010466957,0.0001479162,0.00023730224,0.00048156647],"domain_scores_gemma":[0.99761474,0.00031510481,0.00030321485,0.00042377945,0.0002760128,0.0010671413],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023967184,0.00023801906,0.0006494064,0.0008174929,0.00063132826,0.00003372955,0.00024807005,0.00018777658,0.000009323845],"category_scores_gemma":[0.0015865453,0.00016084308,0.00023520141,0.00021599275,0.00033480476,0.00008245004,0.000029617295,0.0012843866,0.000003435259],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037273887,0.000036473662,0.98778045,0.000056404522,0.00008817405,0.00015866917,0.0012758309,0.00017429232,0.0015600973,0.000059017388,0.0006557676,0.008117549],"study_design_scores_gemma":[0.0033042755,0.0020593896,0.97858196,0.00073918496,0.00010876267,0.00016034975,0.00089093106,0.0000013224756,0.0009825935,0.00001299789,0.012976837,0.00018141569],"about_ca_topic_score_codex":0.5133736,"about_ca_topic_score_gemma":0.9065384,"teacher_disagreement_score":0.39316478,"about_ca_system_score_codex":0.001046997,"about_ca_system_score_gemma":0.0029995744,"threshold_uncertainty_score":0.65589905},"labels":[],"label_agreement":null},{"id":"W2275471133","doi":"10.1186/s12879-016-1370-0","title":"Population structure, epidemiology and antibiotic resistance patterns of Streptococcus pneumoniae serotype 5: prior to PCV-13 vaccine introduction in Eastern Gambia","year":2016,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Medical Research Council; Imperial College London","keywords":"Multilocus sequence typing; Serotype; Streptococcus pneumoniae; Biology; Population; Antibiotic resistance; Vaccination; Virology; Pneumococcal conjugate vaccine; Molecular epidemiology; Genotyping; Microbiology; Genotype; Medicine; Antibiotics; Genetics","score_opus":0.014734003268692227,"score_gpt":0.28801982456741443,"score_spread":0.2732858212987222,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2275471133","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971487,0.00013708505,0.0004726145,0.00085828156,0.00035436187,0.0008072448,0.00010144355,0.0000902264,0.000030051548],"genre_scores_gemma":[0.99907833,0.000047588666,0.000019166406,0.00019555796,0.0003924281,0.000026985332,0.000024583356,0.00002600913,0.00018934126],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983727,0.00022164444,0.0005334291,0.00045762298,0.0001197281,0.00029491173],"domain_scores_gemma":[0.9988777,0.00020659745,0.00021263763,0.00037132253,0.00011904913,0.00021271377],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014953958,0.00020714501,0.0005190976,0.0003579419,0.000078370336,0.000008381117,0.00004849188,0.00011965145,0.00007647358],"category_scores_gemma":[0.0010157258,0.00015034356,0.0000829839,0.0002759514,0.000039366932,0.0001322241,0.000044291886,0.00010448593,0.000011630211],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014547186,0.00015875151,0.9794365,0.0003117412,0.000031465617,0.0000051429847,0.000031451862,0.00007030453,0.016300537,0.000130568,0.00007149151,0.003306543],"study_design_scores_gemma":[0.0016279853,0.0003923681,0.9960524,0.00033806544,0.00010523627,0.000021925067,0.000016836704,0.00001867609,0.00051870523,0.0004054289,0.0003379446,0.0001644623],"about_ca_topic_score_codex":0.00020605684,"about_ca_topic_score_gemma":0.005580769,"teacher_disagreement_score":0.016615836,"about_ca_system_score_codex":0.00012720139,"about_ca_system_score_gemma":0.000063254956,"threshold_uncertainty_score":0.61308324},"labels":[],"label_agreement":null},{"id":"W2278843343","doi":"10.1016/j.vaccine.2016.02.024","title":"The effectiveness of pneumococcal polysaccharide vaccine 23 (PPV23) in the general population of 50 years of age and older: A systematic review and meta-analysis","year":2016,"lang":"en","type":"review","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":134,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"McGill University; GlaxoSmithKline; Pfizer","keywords":"Medicine; Meta-analysis; Pneumococcal vaccine; Pneumococcal polysaccharide vaccine; Population; Immunology; Streptococcus pneumoniae; Pneumococcal disease; Internal medicine; Microbiology; Biology; Environmental health","score_opus":0.03536085557255264,"score_gpt":0.34380580330423505,"score_spread":0.3084449477316824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2278843343","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004748434,0.9915417,0.000011326706,0.00014210843,0.000025645511,0.0034567332,0.000055384844,0.0000069468006,0.000011727111],"genre_scores_gemma":[0.021836562,0.9776383,0.000005412675,0.000042549465,0.000022939477,0.00033505898,0.000024639192,0.000024170487,0.00007036813],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9959684,0.0017735105,0.0015361715,0.00029252746,0.0002654652,0.00016390956],"domain_scores_gemma":[0.99628496,0.0016911931,0.0010910006,0.0007725134,0.000105867424,0.000054469212],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0029013152,0.0003123781,0.006280403,0.00043927477,0.00004408279,0.00000900049,0.00018643869,0.00015325457,0.000018417171],"category_scores_gemma":[0.00049482204,0.00012792194,0.0011858928,0.0010039394,0.000023590173,0.00004214324,0.00006621485,0.00021333505,0.0000012608674],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000240301,0.000121605444,0.0013458346,0.95536464,0.039927606,0.000017519962,0.000037647063,6.556922e-7,0.00033232322,0.00025503561,0.000008901883,0.0025641723],"study_design_scores_gemma":[0.0007657721,0.00025300746,0.06376854,0.08240109,0.8500593,0.00017835035,0.000009344374,0.0000028527265,0.000009432054,0.00004423498,0.0022869166,0.00022117622],"about_ca_topic_score_codex":0.00012142813,"about_ca_topic_score_gemma":0.0000696245,"teacher_disagreement_score":0.8729636,"about_ca_system_score_codex":0.000033360997,"about_ca_system_score_gemma":0.000050889597,"threshold_uncertainty_score":0.52165055},"labels":[],"label_agreement":null},{"id":"W2281637063","doi":"","title":"Serial testing using IGRAs in a cohort of Indian nursing students","year":2011,"lang":"en","type":"article","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Medicine; Cohort; Random effects model; Analysis of variance; Test (biology); Repeated measures design; Demography; Correlation; Statistics; Internal medicine; Mathematics","score_opus":0.08435485963008595,"score_gpt":0.3535301048870537,"score_spread":0.2691752452569678,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2281637063","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98376644,0.00000429514,0.000030965937,0.0000108717195,0.00015743064,0.00019745444,4.6960858e-7,0.000025193705,0.015806876],"genre_scores_gemma":[0.9990959,6.2406775e-7,0.0007314016,0.00006920306,0.00005486363,0.000002939771,4.900435e-7,0.000007860176,0.00003671905],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99943864,0.000020517646,0.00019162022,0.000096395255,0.00012513767,0.00012767523],"domain_scores_gemma":[0.9997365,0.000016060736,0.0000461099,0.0000992499,0.00004310523,0.000058958984],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012407094,0.00005892062,0.00014912912,0.0001548945,0.000033395965,0.0000037781597,0.000038809772,0.00005216194,0.00006692977],"category_scores_gemma":[0.00007635458,0.000049104197,0.000027839245,0.00026192341,0.00004787141,0.00004432341,0.000009922487,0.000089352165,0.0000047072404],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001287967,0.00030386215,0.9215426,0.000015595122,0.0000149918815,0.00003229164,0.0008494389,0.0000050717995,0.07655449,0.000011205193,0.000003205733,0.00065435434],"study_design_scores_gemma":[0.0006035639,0.00013715838,0.9918313,0.00031402992,0.000037457212,0.00006381769,0.00027320939,0.00006448712,0.006577136,0.00003624919,0.000009744505,0.00005182998],"about_ca_topic_score_codex":0.00070116256,"about_ca_topic_score_gemma":0.000066853194,"teacher_disagreement_score":0.0702887,"about_ca_system_score_codex":0.00005583446,"about_ca_system_score_gemma":0.000081183025,"threshold_uncertainty_score":0.2002411},"labels":[],"label_agreement":null},{"id":"W2283402379","doi":"","title":"Novel mechanisms of resistance to protein synthesis inhibitors in Streptococcus pneumoniae","year":2008,"lang":"en","type":"dissertation","venue":"University of the Witwatersrand, Johannesburg Institutional Repository on DSpace (University of the Witwatersrand, Johannesburg)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Streptococcus pneumoniae; Microbiology; Medicine; Biology; Chemistry; Antibiotics","score_opus":0.00787228087922007,"score_gpt":0.18731210604100862,"score_spread":0.17943982516178855,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2283402379","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98957026,0.00008553121,0.00038424227,0.0023905013,0.0015384097,0.002717106,0.0002470485,0.0000674628,0.0029994163],"genre_scores_gemma":[0.96864325,0.000081506034,0.00019123881,0.000053940188,0.00007895476,0.0000050874946,0.000041953346,0.000056505673,0.030847594],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9958108,0.00035507543,0.0007157748,0.0009778985,0.0015291979,0.00061122],"domain_scores_gemma":[0.9960507,0.0001393136,0.001334682,0.0013755796,0.0007752627,0.00032446443],"candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.00042458638,0.000756845,0.0015045308,0.0010770783,0.0015030486,0.0000170044,0.0015044269,0.00078359013,0.00004317745],"category_scores_gemma":[0.00016151872,0.0006447893,0.0013301698,0.0013747289,0.0012582921,0.00032573304,0.00034304333,0.00090261875,0.000015582538],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.010035368,0.0018538422,0.007272202,0.0020354937,0.001160397,0.00044557106,0.012144275,0.007937255,0.9548456,0.0006855085,0.001369238,0.00021526845],"study_design_scores_gemma":[0.014520283,0.0013888783,0.106752284,0.031350374,0.002820955,0.00034313483,0.0350222,0.00019986353,0.78260624,0.0004069758,0.022065943,0.0025228544],"about_ca_topic_score_codex":0.0020958455,"about_ca_topic_score_gemma":0.0028974293,"teacher_disagreement_score":0.17223932,"about_ca_system_score_codex":0.00078604143,"about_ca_system_score_gemma":0.0011992624,"threshold_uncertainty_score":0.99979687},"labels":[],"label_agreement":null},{"id":"W2288573439","doi":"10.1128/iai.01275-15","title":"Streptococcus pneumoniae Colonization Disrupts the Microbial Community within the Upper Respiratory Tract of Aging Mice","year":2016,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Population Health Research Institute; McMaster University; McMaster University Medical Centre","funders":"Canadian Institutes of Health Research; Ontario Ministry of Research, Innovation and Science; Canada Research Chairs; Government of Canada","keywords":"Streptococcus pneumoniae; Biology; Colonization; Respiratory tract; Microbiology; Respiratory tract infections; Streptococcaceae; Respiratory system; Antibiotics","score_opus":0.025105440615591536,"score_gpt":0.2916336477213023,"score_spread":0.26652820710571073,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2288573439","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99645114,0.00007410679,0.00019317349,0.0017445774,0.00032753218,0.00042625418,0.000010880822,0.000062597384,0.0007097264],"genre_scores_gemma":[0.99880147,0.00007998991,0.0000016958506,0.0008578366,0.000081079714,0.000026940128,0.000003481427,0.000014201159,0.0001333023],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984259,0.0008855453,0.00032089592,0.0001038516,0.00012091428,0.00014290615],"domain_scores_gemma":[0.99865043,0.0004243404,0.00021135798,0.00047340183,0.0001830861,0.000057389516],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009331847,0.00013901705,0.00018032688,0.00009175928,0.0011167007,0.000029415407,0.00010093559,0.00010441,0.000045732857],"category_scores_gemma":[0.00034312945,0.00006570484,0.0000962834,0.00027648816,0.0004591781,0.00015542956,0.00007914035,0.0006059827,0.000011836632],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017515733,0.00026136555,0.4884025,0.000034310346,0.00004824338,6.2472725e-7,0.0010641566,0.0000069939206,0.5074103,0.0001428227,0.00010384955,0.0025073567],"study_design_scores_gemma":[0.00083304546,0.0003327354,0.957582,0.00013935102,0.00009117703,0.000059114464,0.00037335776,0.000014084932,0.029041186,0.00009056284,0.011348381,0.000094980125],"about_ca_topic_score_codex":0.00058606244,"about_ca_topic_score_gemma":0.00033607133,"teacher_disagreement_score":0.4783691,"about_ca_system_score_codex":0.00006292276,"about_ca_system_score_gemma":0.00010091545,"threshold_uncertainty_score":0.85888714},"labels":[],"label_agreement":null},{"id":"W2288620069","doi":"10.1128/iai.01504-15","title":"Cigarette Smoke Attenuates the Nasal Host Response to Streptococcus pneumoniae and Predisposes to Invasive Pneumococcal Disease in Mice","year":2016,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Joseph’s Healthcare Hamilton; McMaster University Medical Centre; McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Streptococcus pneumoniae; Immunology; Pneumococcal infections; Medicine; Context (archaeology); Respiratory tract; Disease; Biology; Microbiology; Respiratory system; Internal medicine; Antibiotics","score_opus":0.018117833410953892,"score_gpt":0.28128963024031467,"score_spread":0.26317179682936076,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2288620069","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9821944,0.00006292225,0.000024720566,0.016399033,0.00020279932,0.000906955,0.00003732345,0.000074156866,0.00009767192],"genre_scores_gemma":[0.99719244,0.00013898332,0.000001203364,0.0021664128,0.00007675646,0.00018670733,0.0000026476916,0.0000175803,0.00021724765],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987084,0.00036718627,0.00025022624,0.00027775342,0.00013766438,0.0002587689],"domain_scores_gemma":[0.9985205,0.0006012488,0.000051185747,0.00032248214,0.00011312676,0.0003914819],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044618477,0.00019096409,0.00021212803,0.0002730328,0.00033398587,0.000051281808,0.00006548006,0.00008400749,0.000032062024],"category_scores_gemma":[0.0015298229,0.00011386552,0.000057223282,0.0003602092,0.00016925286,0.0001560703,0.0001459716,0.00026891107,0.000027930659],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046333918,0.000099143406,0.57212067,0.00001774686,0.000023635801,0.000013247066,0.0004456315,0.0000027838155,0.42486194,0.000009646497,0.000071596274,0.0018706362],"study_design_scores_gemma":[0.0009366175,0.0006744169,0.98057497,0.00026153162,0.00004988528,0.000028341907,0.0001263905,0.0000052956875,0.0076106973,0.000027610397,0.009542753,0.00016146705],"about_ca_topic_score_codex":0.00037531124,"about_ca_topic_score_gemma":0.0005907599,"teacher_disagreement_score":0.41725123,"about_ca_system_score_codex":0.00009619155,"about_ca_system_score_gemma":0.00013564137,"threshold_uncertainty_score":0.46433014},"labels":[],"label_agreement":null},{"id":"W2290269224","doi":"10.1155/2011/179170","title":"<i>Streptococcus pneumoniae</i> meningitis in Alberta pre‐ and postintroduction of the 7‐valent pneumococcal conjugate vaccine","year":2011,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dalhousie University; University of Calgary; University of Alberta; McMaster University","funders":"Pfizer Canada; Pfizer","keywords":"Streptococcus pneumoniae; Medicine; Meningitis; Pneumococcal conjugate vaccine; Pediatrics; Pneumococcal infections; Vaccination; Epidemiology; Conjugate vaccine; Incidence (geometry); Cohort; Mortality rate; Internal medicine; Immunology; Immunization; Antibiotics; Microbiology; Biology; Antibody","score_opus":0.005372557555850974,"score_gpt":0.211364206236229,"score_spread":0.20599164868037803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2290269224","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99543875,0.00083495415,0.00000426942,0.0026211194,0.000602545,0.00022574601,0.000026723903,0.0000040253376,0.00024188597],"genre_scores_gemma":[0.99897796,0.00029617047,0.0000016769245,0.0005222295,0.00014530982,0.0000056796075,0.0000028255868,0.000009905228,0.00003822134],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99895084,0.0001130728,0.00046856343,0.00015741997,0.000058799113,0.00025129618],"domain_scores_gemma":[0.9987126,0.00008429732,0.00020744125,0.00012505853,0.00013075084,0.000739871],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016068696,0.00013223541,0.0003748146,0.00021515583,0.00009645908,0.0000063081907,0.000076561366,0.00015472583,0.000152491],"category_scores_gemma":[0.00057946326,0.0000866988,0.00011011867,0.0001506375,0.00039237866,0.00004624414,0.00002725489,0.00035286613,0.0000010789],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004282792,0.00010160787,0.9500521,0.00006066654,0.000089569534,0.000105220395,0.0002976652,0.0000016023263,0.047037557,0.00011590136,0.00022434794,0.0018709254],"study_design_scores_gemma":[0.0017595892,0.0009581642,0.98176354,0.00029156503,0.00020412062,0.007901443,0.00005824381,0.0000041770722,0.0010610644,0.00012833533,0.005770928,0.00009880615],"about_ca_topic_score_codex":0.006903549,"about_ca_topic_score_gemma":0.025832176,"teacher_disagreement_score":0.04597649,"about_ca_system_score_codex":0.000070682654,"about_ca_system_score_gemma":0.0008546622,"threshold_uncertainty_score":0.99970955},"labels":[],"label_agreement":null},{"id":"W2291131376","doi":"10.1017/s0950268816000455","title":"Bayesian latent class estimation of the incidence of chest radiograph-confirmed pneumonia in rural Thailand","year":2016,"lang":"en","type":"article","venue":"Epidemiology and Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Centers for Disease Control and Prevention; National Institutes of Health","keywords":"Pneumonia; Medicine; Incidence (geometry); Confidence interval; Chest radiograph; Radiography; Credible interval; Radiology; Internal medicine","score_opus":0.020690092886599655,"score_gpt":0.29456902815707375,"score_spread":0.2738789352704741,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2291131376","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99357367,0.00009015946,0.0021379925,0.0034673165,0.00024026586,0.00021928361,0.0000025265042,0.000015816795,0.00025299206],"genre_scores_gemma":[0.9992478,0.00040526135,0.000034961442,0.00021192268,0.000031167656,0.000018171406,0.0000015349627,0.000004599896,0.00004460465],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99893165,0.00032014842,0.00043092793,0.00012577616,0.000049599443,0.00014192742],"domain_scores_gemma":[0.99903435,0.0004736046,0.00024081892,0.00016316092,0.00004251543,0.000045526336],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007762617,0.0000887714,0.0003266979,0.00016263807,0.000057593472,8.1998013e-7,0.000029822999,0.00016846371,0.00001884275],"category_scores_gemma":[0.0010322602,0.000046335186,0.00009389531,0.00023004418,0.00034628029,0.00008395215,0.000019042896,0.00013972081,0.0000019514114],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003273165,0.00004531349,0.93147516,0.000045658646,0.000022019645,5.008914e-7,0.000049939244,0.000111594854,0.060097557,0.0004953467,0.000032518266,0.0075916736],"study_design_scores_gemma":[0.00062712113,0.00024848361,0.9931192,0.00025041067,0.000041061132,0.00007934751,0.000006165644,0.0011145908,0.0029277974,0.0012808933,0.0002555819,0.00004938003],"about_ca_topic_score_codex":0.00029937396,"about_ca_topic_score_gemma":0.00015402684,"teacher_disagreement_score":0.061644018,"about_ca_system_score_codex":0.000031058404,"about_ca_system_score_gemma":0.000037966103,"threshold_uncertainty_score":0.1889494},"labels":[],"label_agreement":null},{"id":"W2292217379","doi":"10.17269/s41997-018-0050-9","title":"Cost-effectiveness of alternative strategies for use of 13-valent pneumococcal conjugate vaccine (PCV13) in Canadian adults","year":2018,"lang":"en","type":"article","venue":"Canadian Journal of Public Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer","keywords":"Pneumococcal conjugate vaccine; Conjugate; Pneumococcal disease; Medicine; Streptococcus pneumoniae; Virology; Mathematics; Biology; Microbiology","score_opus":0.12033852014977367,"score_gpt":0.36885383831099205,"score_spread":0.24851531816121838,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2292217379","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9928536,0.00014505444,0.00049649266,0.0043304022,0.0006168898,0.0010507845,0.0002922292,0.0000034816508,0.00021108809],"genre_scores_gemma":[0.9988956,0.000048136877,0.00007472692,0.00069366716,0.00021829702,0.000020569778,0.0000134265365,0.000021156928,0.000014448215],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9977141,0.0003504226,0.0008403252,0.00016274306,0.00017310223,0.0007593075],"domain_scores_gemma":[0.9947946,0.00025589066,0.0005090097,0.0001954377,0.0014549823,0.0027900976],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0020550839,0.0001564376,0.00065509655,0.0013926644,0.00012310677,0.000032875145,0.0001483637,0.00011121169,0.000053609947],"category_scores_gemma":[0.0008219509,0.00013602269,0.00013628157,0.0004654969,0.00019308027,0.00034534256,0.0000061640926,0.00030606176,0.0000017273937],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004085837,0.00027471766,0.96744174,0.0015152948,0.00040302787,0.00022244209,0.005365484,0.00020864466,0.0024386216,0.0050418004,0.0013824574,0.015297207],"study_design_scores_gemma":[0.004853332,0.005030974,0.9220575,0.0014593444,0.00003859314,0.00032294905,0.0017453968,0.0005322969,0.00060039014,0.0002231787,0.06295589,0.00018013164],"about_ca_topic_score_codex":0.7358228,"about_ca_topic_score_gemma":0.9780146,"teacher_disagreement_score":0.2421918,"about_ca_system_score_codex":0.0014273952,"about_ca_system_score_gemma":0.035463613,"threshold_uncertainty_score":0.97000444},"labels":[],"label_agreement":null},{"id":"W2296952336","doi":"10.18553/jmcp.2002.8.5.406","title":"Clinical Pharmacist Interventions Associated with Appropriateness and Lengthof Inpatient Antimicrobial Therapy for Pneumonia","year":2002,"lang":"en","type":"article","venue":"Journal of Managed Care Pharmacy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumonia; Psychological intervention; Pharmaceutical care; Clinical pharmacy; Pharmacist; Antimicrobial stewardship; Emergency medicine; Antibiotics; Intensive care medicine; Pharmacy; Internal medicine; Antibiotic resistance; Family medicine; Nursing","score_opus":0.12287502161693276,"score_gpt":0.3959279199479969,"score_spread":0.27305289833106416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2296952336","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950423,0.0010101086,0.00058025157,0.001762521,0.0007022137,0.0005894254,0.000025557985,0.00003209395,0.00025549394],"genre_scores_gemma":[0.9957505,0.0025322314,0.00014596138,0.0010221867,0.00034273247,0.000016167594,0.000008246463,0.000031106214,0.00015088328],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.99850684,0.00018942142,0.0007035167,0.00017592893,0.0002186098,0.00020570886],"domain_scores_gemma":[0.9984596,0.00014447948,0.000530908,0.00011488509,0.0005514827,0.00019863973],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000499677,0.00017043493,0.00045880093,0.00021313224,0.00019910606,0.00004317851,0.0001042584,0.00005437388,0.00005069503],"category_scores_gemma":[0.000101245794,0.00011952758,0.00043676532,0.00018415245,0.00011122447,0.00017211863,0.000025288657,0.0004973764,0.0000030922918],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0035473856,0.0070360093,0.4946971,0.0013963913,0.005374017,0.0008293783,0.0028977178,0.00012284196,0.070897676,0.000026209176,0.013203269,0.39997202],"study_design_scores_gemma":[0.18448001,0.017056612,0.3218928,0.0048503797,0.008087188,0.0038890254,0.0021699925,0.0036350584,0.01845489,0.000057095534,0.4336799,0.0017470457],"about_ca_topic_score_codex":0.0000020839877,"about_ca_topic_score_gemma":0.000003710696,"teacher_disagreement_score":0.42047665,"about_ca_system_score_codex":0.00007729815,"about_ca_system_score_gemma":0.00005150786,"threshold_uncertainty_score":0.48741934},"labels":[],"label_agreement":null},{"id":"W2297866781","doi":"10.1155/2007/451417","title":"Admission is not Always Necessary for Patients with Community‐Acquired Pneumonia in Risk Classes IV and V Diagnosed in the Emergency Room","year":2007,"lang":"en","type":"article","venue":"Canadian Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta","funders":"Pfizer Canada; Pfizer; Alberta Heritage Foundation for Medical Research; Fondation pour la Recherche Médicale; Abbott Canada; Capital Health","keywords":"Medicine; Chest radiograph; Pneumonia; Emergency department; Observational study; Community-acquired pneumonia; Ambulatory; White blood cell; Emergency medicine; Chest pain; Altered Mental Status; Prospective cohort study; Pediatrics; Internal medicine; Lung","score_opus":0.025813045162710675,"score_gpt":0.2856606637976373,"score_spread":0.25984761863492667,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2297866781","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972467,0.00030413634,0.000032076678,0.0010213569,0.00022339475,0.0006336219,0.00006146002,0.00001015694,0.0004671397],"genre_scores_gemma":[0.9934956,0.00010667168,0.000022918992,0.006119694,0.00016100412,0.000027602819,0.00000820796,0.000030927968,0.000027393402],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9980495,0.00036579996,0.00055059156,0.0001860205,0.00028079466,0.000567273],"domain_scores_gemma":[0.9981869,0.0003056035,0.00020880376,0.00032309833,0.00019245879,0.00078316714],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015452098,0.00021705094,0.00028811517,0.0007516271,0.00086677034,0.000049219558,0.00020632679,0.00018004094,0.00006585365],"category_scores_gemma":[0.00040766282,0.0001476817,0.00007973787,0.0004995058,0.00007188613,0.0001937924,0.000016799231,0.00095388625,0.0000035364963],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016780474,0.00020381554,0.9887791,0.000037607017,0.000027902874,0.00024887247,0.0014437308,0.0000072626235,0.0007223909,0.00001244832,0.0014749632,0.006874081],"study_design_scores_gemma":[0.0030625402,0.0009996874,0.9252173,0.0001832684,0.000052488664,0.000061003917,0.0013589497,0.00001598472,0.00006500137,0.00008889181,0.06871952,0.00017540676],"about_ca_topic_score_codex":0.004636189,"about_ca_topic_score_gemma":0.2290915,"teacher_disagreement_score":0.22445531,"about_ca_system_score_codex":0.00031235046,"about_ca_system_score_gemma":0.00080779626,"threshold_uncertainty_score":0.7849756},"labels":[],"label_agreement":null},{"id":"W2299795114","doi":"10.3899/jrheum.151289","title":"Pneumococcal Vaccination Strategies in the Real World of Chronically Ill Patients","year":2016,"lang":"en","type":"letter","venue":"The Journal of Rheumatology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Vaccination; Pneumonia; Immunization; Comorbidity; Pneumococcal vaccine; Intensive care medicine; Population; Pediatrics; Public health; Pneumococcal pneumonia; Immunology; Internal medicine; Immune system; Environmental health; Streptococcus pneumoniae","score_opus":0.015069920120469952,"score_gpt":0.28608842671689616,"score_spread":0.27101850659642623,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2299795114","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.550416,0.000097206845,0.00003423055,0.44582212,0.0006419733,0.0002753791,0.00000777759,0.000006672212,0.0026986685],"genre_scores_gemma":[0.93415046,0.0014772648,0.000007923571,0.063781545,0.00031619376,0.000007729603,0.00000955963,0.000030129824,0.00021918851],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9975538,0.00069931685,0.0009855556,0.00009930975,0.00039157798,0.00027043722],"domain_scores_gemma":[0.99698436,0.0009426086,0.0011249967,0.00032559683,0.00059088756,0.00003154167],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00077428966,0.00019005685,0.00069499714,0.0004207267,0.00006446366,0.000010486008,0.000413386,0.0003631245,0.00011241004],"category_scores_gemma":[0.000225706,0.000079882964,0.00020358984,0.0002100511,0.00017776461,0.00009523278,0.00003648442,0.0017944511,0.0000138036285],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005638149,0.00052971806,0.4425288,0.00079951854,0.0007313601,0.0002661936,0.0019676825,0.000025669537,0.0016380033,0.0010882874,0.54486585,0.004995082],"study_design_scores_gemma":[0.0046667187,0.0023872156,0.50028753,0.0015424339,0.0005669949,0.0050740577,0.00042955315,0.0000077695895,0.000044058106,0.0021891485,0.4825234,0.0002811283],"about_ca_topic_score_codex":0.000078186,"about_ca_topic_score_gemma":0.0002270333,"teacher_disagreement_score":0.38373446,"about_ca_system_score_codex":0.000116181,"about_ca_system_score_gemma":0.0005110606,"threshold_uncertainty_score":0.7796097},"labels":[],"label_agreement":null},{"id":"W2303915185","doi":"10.1177/2010105815623292","title":"Prognostic value of Pneumonia Severity Index, CURB-65, CRB-65, and procalcitonin in community-acquired pneumonia in Singapore","year":2015,"lang":"en","type":"article","venue":"Proceedings of Singapore Healthcare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital","funders":"National University Health System; Health Promotion Board - Singapore","keywords":"Procalcitonin; Pneumonia severity index; Medicine; Community-acquired pneumonia; Pneumonia; Internal medicine; Receiver operating characteristic; Intensive care unit; Mortality rate; Risk stratification; Severity of illness; Retrospective cohort study; Observational study; Emergency department; Sepsis","score_opus":0.040254494212495044,"score_gpt":0.3185419519706381,"score_spread":0.27828745775814306,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2303915185","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9927436,0.00074424705,0.0000028904053,0.0039870967,0.0001454187,0.0014809937,0.000024017108,0.00011155171,0.00076016376],"genre_scores_gemma":[0.99887776,0.00008941494,0.0003026458,0.0004295894,0.00007846225,0.00010530008,0.000019626383,0.0000670974,0.00003007398],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99662226,0.00013149033,0.001354501,0.00051402,0.0006772978,0.0007003994],"domain_scores_gemma":[0.9972624,0.00016291863,0.0006600732,0.00027365139,0.0010972689,0.00054364256],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001652538,0.0004379387,0.0011929807,0.00086707063,0.0001973967,0.00003786235,0.0002536861,0.00049237296,0.0000026509767],"category_scores_gemma":[0.0013755875,0.00042049112,0.00011029985,0.0014767821,0.00054278155,0.00040634285,0.00021988616,0.001311839,0.0000017582577],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000257679,0.000885898,0.94570166,0.0041857404,0.000029071314,0.00003104514,0.009102945,0.000009372934,0.037493404,0.00047689627,0.000042728017,0.0017835714],"study_design_scores_gemma":[0.0026877176,0.0019300123,0.9739548,0.003812177,0.0000687567,0.0003721145,0.009848281,0.0009075416,0.0036541626,0.00198684,0.0003735177,0.0004040693],"about_ca_topic_score_codex":0.002227148,"about_ca_topic_score_gemma":0.00041628678,"teacher_disagreement_score":0.03383924,"about_ca_system_score_codex":0.00040798768,"about_ca_system_score_gemma":0.0008179809,"threshold_uncertainty_score":0.9998247},"labels":[],"label_agreement":null},{"id":"W2305571771","doi":"","title":"Changes in the Epidemiology of Invasive Pneumococcal Disease (ipd) Following Implementation of a 7-Valent Pneumococcal Conjugate Vaccine (pcv7) Program in Quebec, Canada","year":2008,"lang":"en","type":"article","venue":"46th Annual Meeting","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Pneumococcal disease; Pneumococcal conjugate vaccine; Epidemiology; Medicine; Pneumococcal vaccine; Streptococcus pneumoniae; Virology; Microbiology; Biology; Antibiotics; Internal medicine","score_opus":0.025817265931865785,"score_gpt":0.322920493730259,"score_spread":0.2971032277983932,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2305571771","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99337083,0.00023638716,0.00000233737,0.004869938,0.00014786892,0.0012166713,0.00004172725,0.000019890038,0.00009432893],"genre_scores_gemma":[0.99877,0.000074542724,0.00003604433,0.0006960905,0.00009589158,0.00025301467,0.000040487066,0.000015432755,0.000018475072],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99768496,0.000527229,0.00080871076,0.00027912442,0.00024909416,0.00045091318],"domain_scores_gemma":[0.9984531,0.0007323996,0.00031839972,0.00022780844,0.00011033385,0.00015799518],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008102426,0.00018943106,0.0005796032,0.00021170537,0.00009730202,0.000002148631,0.00012817382,0.00007434945,0.000012548006],"category_scores_gemma":[0.0011082971,0.00013995559,0.00012283325,0.00043880948,0.000075233074,0.000080565755,0.00005148882,0.00027888952,7.4847736e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000079617224,0.00021688019,0.98183143,0.00019503653,0.000038347316,0.0002608479,0.0026685754,0.00008114376,0.013085919,0.000029194432,0.000079770325,0.0014332449],"study_design_scores_gemma":[0.0014938819,0.00036458654,0.9879298,0.00031996606,0.00006569595,0.0000238775,0.0069845296,0.000042365074,0.0020174524,0.00001923658,0.0006149322,0.0001236776],"about_ca_topic_score_codex":0.379333,"about_ca_topic_score_gemma":0.93999225,"teacher_disagreement_score":0.5606592,"about_ca_system_score_codex":0.0001630545,"about_ca_system_score_gemma":0.0009607905,"threshold_uncertainty_score":0.6248001},"labels":[],"label_agreement":null},{"id":"W2307157787","doi":"","title":"Telithromycin in the treatment of acute bacterial sinusitis, acute exacerbations of chronic bronchitis, and community-acquired pneumonia.","year":2006,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Telithromycin; Medicine; Ketolide; Chronic bronchitis; Bronchitis; Pneumonia; Antibiotics; Streptococcus pneumoniae; Respiratory tract infections; Tolerability; Bacterial pneumonia; Antibacterial agent; Community-acquired pneumonia; Intensive care medicine; Adverse effect; Pharmacology; Internal medicine; Microbiology; Respiratory system","score_opus":0.017372813225935528,"score_gpt":0.24953135877986254,"score_spread":0.232158545553927,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2307157787","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99618775,0.00027394854,0.000008096174,0.0008268282,0.00012720795,0.001030828,0.00015427654,0.000021494401,0.0013695573],"genre_scores_gemma":[0.99847823,0.00044305084,0.000016656893,0.0000512592,0.0001455007,0.00056853984,0.00009132121,0.000012932571,0.00019249806],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988965,0.0002580673,0.0003529743,0.00011854721,0.0001375282,0.0002364274],"domain_scores_gemma":[0.99929935,0.00013739162,0.00011568248,0.00035286133,0.000042602074,0.000052117746],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018794184,0.0001380596,0.00034298212,0.00013196575,0.00014911097,0.000013521555,0.00007966477,0.000080228776,0.000017005756],"category_scores_gemma":[0.000011309367,0.00009608266,0.00008723577,0.00025373316,0.0002372176,0.00006445402,0.00001947332,0.000108435226,0.0000011196523],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041679182,0.012368836,0.22063616,0.0003388428,0.0017523336,0.00020582441,0.006138728,0.00003290037,0.63612974,0.00081068923,0.00064986805,0.12051928],"study_design_scores_gemma":[0.0024777853,0.00086628925,0.984045,0.0000263186,0.00043789257,0.00017204818,0.00010833461,0.000010573545,0.0061576664,0.0000715984,0.0055426816,0.000083797306],"about_ca_topic_score_codex":0.0009456462,"about_ca_topic_score_gemma":0.0008727655,"teacher_disagreement_score":0.76340884,"about_ca_system_score_codex":0.00015714321,"about_ca_system_score_gemma":0.00007434889,"threshold_uncertainty_score":0.39181373},"labels":[],"label_agreement":null},{"id":"W2310826711","doi":"10.1371/journal.pone.0152204","title":"Assessing the Quality of Care for Pneumonia in Integrated Community Case Management: A Cross-Sectional Mixed Methods Study","year":2016,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Global Affairs Canada; Government of the United Kingdom","keywords":"Medicine; Psychological intervention; Pneumonia; Observational study; Community-acquired pneumonia; Cross-sectional study; Family medicine; Community health; Community health workers; Focus group; Health care; Public health; Environmental health; Nursing; Population; Health services; Pathology; Internal medicine","score_opus":0.2097434509793812,"score_gpt":0.4791232730664366,"score_spread":0.26937982208705535,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2310826711","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99694425,0.000029579835,0.0011271808,0.00017410997,0.00007333484,0.0011536505,0.000040973442,0.000042369455,0.000414559],"genre_scores_gemma":[0.9978771,0.000004143097,0.0016335241,0.00006247743,0.000030193682,0.00024782834,0.000007142319,0.000014482038,0.00012309698],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9977331,0.0012979015,0.00045209646,0.00015209397,0.00020766853,0.00015712614],"domain_scores_gemma":[0.99799436,0.0010308723,0.00014085615,0.000440407,0.0003453363,0.00004814058],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0021781381,0.00011206123,0.0003420155,0.00013497136,0.00036342387,0.000031596515,0.000103414444,0.000066902336,0.000018901497],"category_scores_gemma":[0.0006502586,0.00006230245,0.00008861143,0.00028064352,0.00013393612,0.00010577693,0.000073747186,0.00028396348,0.000002082607],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000086775704,0.0052250703,0.81728184,0.0004872929,0.00044600997,0.000036167963,0.0014538445,0.0000014755464,0.17067179,0.0000714628,0.0000018659042,0.0042363745],"study_design_scores_gemma":[0.0022598228,0.00053044944,0.9761647,0.00022804899,0.00019298174,0.000029566603,0.012819377,0.000025329793,0.007507392,0.00009831843,0.000060479604,0.00008354485],"about_ca_topic_score_codex":0.0003974379,"about_ca_topic_score_gemma":0.00093742396,"teacher_disagreement_score":0.1631644,"about_ca_system_score_codex":0.0001459964,"about_ca_system_score_gemma":0.000056187248,"threshold_uncertainty_score":0.27951992},"labels":[],"label_agreement":null},{"id":"W2312918737","doi":"","title":"Adult pneumococcal immunization.","year":2015,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Immunization; Streptococcus pneumoniae; Advisory committee; Pneumococcal disease; Medicine; Family medicine; Pneumococcal infections; Pediatrics; Vaccination; Immunology; Political science; Antibody; Biology; Antibiotics; Microbiology","score_opus":0.04314306870350643,"score_gpt":0.2505540178701373,"score_spread":0.2074109491666309,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2312918737","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9370867,0.00005192316,0.00013404338,0.0053381086,0.00053067645,0.00052904844,0.0000024059173,0.00021190602,0.056115214],"genre_scores_gemma":[0.9958964,0.000008505262,0.00001889572,0.0011890766,0.00019693522,0.00034974297,0.000009604975,0.0000124029475,0.0023184633],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994767,0.000020880301,0.00011188584,0.0000938451,0.00012272765,0.00017398741],"domain_scores_gemma":[0.9992893,0.000011170272,0.000024606325,0.0001768049,0.00023541854,0.0002627],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009714285,0.00005983817,0.000097809396,0.0000669882,0.00004739648,0.000013010681,0.000040528266,0.00005289866,0.000015102242],"category_scores_gemma":[0.0003945165,0.000047725658,0.000034466575,0.0002390625,0.000036472276,0.00005829725,0.000020435904,0.00009802108,0.00012594137],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058086578,0.00063041155,0.87634885,0.000050332772,0.0001592632,0.00009455683,0.00041923087,0.000050158327,0.0051917937,0.0028883265,0.015184494,0.09892447],"study_design_scores_gemma":[0.0008151046,0.000029758277,0.9094986,0.0000040451296,0.000033154876,0.000114764014,0.000056940524,0.000015463624,0.00073451817,0.00008041953,0.08854949,0.00006777666],"about_ca_topic_score_codex":0.000009131272,"about_ca_topic_score_gemma":0.0000021180226,"teacher_disagreement_score":0.098856695,"about_ca_system_score_codex":0.000056839308,"about_ca_system_score_gemma":0.000057855985,"threshold_uncertainty_score":0.19461958},"labels":[],"label_agreement":null},{"id":"W2313338238","doi":"10.5414/cpp42342","title":"A comparative clarithromycin bioavailability study: determination of clarithromycin and 14-(R)-hydroxyclarithromycin under fasting and fed conditions","year":2004,"lang":"en","type":"article","venue":"International Journal of Clinical Pharmacology and Therapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Research Canada","funders":"","keywords":"Bioequivalence; Clarithromycin; Bioavailability; Cmax; Crossover study; Confidence interval; Pharmacology; Chromatography; Analyte; Medicine; Chemistry; Internal medicine","score_opus":0.11430816614270914,"score_gpt":0.48902211348266283,"score_spread":0.37471394733995367,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2313338238","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9886352,0.00030734832,0.002030424,0.0075913826,0.0010397802,0.00030032813,0.000019450988,0.000010941732,0.00006513522],"genre_scores_gemma":[0.99586785,0.000520405,0.0005803942,0.002633548,0.00036836285,0.0000044119724,0.000003474681,0.000009149419,0.000012389808],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9980071,0.00031508354,0.0010775359,0.00020999613,0.0002624133,0.00012784901],"domain_scores_gemma":[0.997695,0.00078163657,0.0006135627,0.00007337227,0.00067850016,0.00015787261],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009318016,0.0001551185,0.0006309505,0.00019078393,0.00012758993,0.00002353248,0.0000933701,0.00021262527,0.00004091912],"category_scores_gemma":[0.00007623992,0.00012593133,0.0001099294,0.00009239579,0.00081718893,0.00018352753,0.0000642801,0.00077582,0.0000010649346],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023363237,0.008272387,0.76636463,0.00008684706,0.005092972,0.00017704788,0.0026302694,0.00028289147,0.20249781,0.0018270246,0.00004981999,0.010381963],"study_design_scores_gemma":[0.012279544,0.0034823706,0.9708892,0.000116207826,0.00096686557,0.0008767891,0.0012373033,0.0004167854,0.0023422597,0.006668866,0.00058060675,0.00014320061],"about_ca_topic_score_codex":0.00001578299,"about_ca_topic_score_gemma":0.000029560171,"teacher_disagreement_score":0.20452456,"about_ca_system_score_codex":0.000048854254,"about_ca_system_score_gemma":0.0002224083,"threshold_uncertainty_score":0.513533},"labels":[],"label_agreement":null},{"id":"W2313556416","doi":"","title":"Empyema Associated with Community-Acquired Pneumonia: a Pediatric Investigators Collaborative Network on Infections in Canada (PICNIC) Study","year":2005,"lang":"en","type":"article","venue":"43rd Annual Meeting","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Picnic; Pneumonia; Medicine; Community-acquired pneumonia; Empyema; Intensive care medicine; Geography; Surgery; Internal medicine; Forestry","score_opus":0.013627804675581511,"score_gpt":0.25042130315371836,"score_spread":0.23679349847813685,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2313556416","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946646,0.00004718878,9.221039e-7,0.0009916618,0.0002205907,0.000847238,0.00004259259,0.0001287981,0.0030564065],"genre_scores_gemma":[0.99787,0.000010292194,0.000018534925,0.001402961,0.00041743767,0.00012749447,0.000020279249,0.000042286832,0.000090714464],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99736106,0.0008981055,0.00050802936,0.00028060164,0.000414823,0.0005373835],"domain_scores_gemma":[0.9981402,0.0006719698,0.0002444994,0.00032853134,0.00032979867,0.00028496957],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006856896,0.00029604766,0.0005064261,0.00024485833,0.000790246,0.00003052237,0.000117900854,0.00010789151,0.000012262812],"category_scores_gemma":[0.00074675743,0.0002503452,0.000045503446,0.0023360462,0.00007050431,0.0001498433,0.00006420287,0.000823796,0.000010747583],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041083633,0.0010000694,0.98533654,0.000017352104,0.000114191826,0.000083109815,0.0041397563,0.008258946,0.00011340368,0.000007741971,0.00074460957,0.00014317811],"study_design_scores_gemma":[0.0027746963,0.0026082997,0.9755186,0.00035523582,0.00021155878,0.000028043267,0.016122509,0.00015435442,0.000054186057,0.000007721938,0.0017960764,0.00036875936],"about_ca_topic_score_codex":0.18278389,"about_ca_topic_score_gemma":0.9357969,"teacher_disagreement_score":0.753013,"about_ca_system_score_codex":0.0011356701,"about_ca_system_score_gemma":0.0022173228,"threshold_uncertainty_score":0.9999949},"labels":[],"label_agreement":null},{"id":"W2314790892","doi":"","title":"Activities of Cethromycin (CETH), Ceftaroline (CPT), and Ceftobiprole (BPR) Against Multi-Drug Resistant (MDR) Streptococcus pneumoniae (SP) Isolates from Canadian Bacterial Surveillance Network (CBSN)","year":2008,"lang":"en","type":"article","venue":"46th Annual Meeting","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Streptococcus pneumoniae; Microbiology; Drug resistance; Multi drug resistant; Drug; Medicine; Antibiotics; Biology; Pharmacology","score_opus":0.011577123726884023,"score_gpt":0.23462506383929332,"score_spread":0.2230479401124093,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2314790892","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956958,0.000665778,0.000012750683,0.0005912402,0.00056356424,0.00055710913,0.00090758683,0.00012366165,0.00088247925],"genre_scores_gemma":[0.99757,0.00031211955,0.0003939323,0.00035967468,0.00094285887,0.00003317378,0.00013978276,0.0000645072,0.00018395421],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99743325,0.00026001365,0.0006927805,0.0005615814,0.00023980884,0.000812577],"domain_scores_gemma":[0.9981042,0.00034788906,0.0003121651,0.00042279542,0.00021956296,0.00059334567],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00042934768,0.00040011993,0.00080955046,0.00020758204,0.00065325334,0.000034353445,0.0001473078,0.00023474383,0.00006037628],"category_scores_gemma":[0.00032973618,0.00036659752,0.00014723765,0.0003211146,0.00032573796,0.00021411746,0.000085808926,0.0005001616,0.000009825197],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027798986,0.00017232391,0.6984271,0.00012668948,0.00021372341,0.00018268164,0.0043521128,0.00042747208,0.29326028,0.000006091065,0.0011238542,0.0014297038],"study_design_scores_gemma":[0.0042992514,0.00065705203,0.9460378,0.0008770583,0.00013394323,0.000071339,0.00392214,0.0014293374,0.014029242,0.000023598644,0.027570583,0.0009485967],"about_ca_topic_score_codex":0.03545507,"about_ca_topic_score_gemma":0.116996735,"teacher_disagreement_score":0.279231,"about_ca_system_score_codex":0.00013849039,"about_ca_system_score_gemma":0.000526962,"threshold_uncertainty_score":0.9998786},"labels":[],"label_agreement":null},{"id":"W2315468532","doi":"10.1155/2002/501543","title":"Macrolide Resistance in <i>Streptococcus pneumoniae</i>: Fallacy or Fact?","year":2002,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dalhousie University; Queen Elizabeth II Health Sciences Centre; University of Calgary","funders":"","keywords":"Streptococcus pneumoniae; Medicine; Pneumonia; Meningitis; Incidence (geometry); Bacteremia; Otitis; Population; Pediatrics; Case fatality rate; Pneumococcal infections; Internal medicine; Surgery; Environmental health; Microbiology; Biology","score_opus":0.009561685008418287,"score_gpt":0.2404136959689941,"score_spread":0.2308520109605758,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2315468532","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9887859,0.004089184,0.000014967339,0.0048843743,0.00049277523,0.00017706756,0.000053904183,0.000014020749,0.0014877756],"genre_scores_gemma":[0.99463505,0.0010190641,0.00000459121,0.0037466472,0.00023156768,0.0000071174263,0.0000037045493,0.000014292192,0.0003379833],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987563,0.00009429227,0.00047894174,0.00017706993,0.00007811839,0.00041529114],"domain_scores_gemma":[0.99788564,0.00012505856,0.00014041988,0.00012641521,0.000115506366,0.001606941],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001293397,0.00016017219,0.00044136148,0.00039357063,0.00012439169,0.000020084448,0.00009263327,0.00021740972,0.001583827],"category_scores_gemma":[0.000782697,0.000113563416,0.00013001637,0.0002384445,0.0003684489,0.00005937955,0.000012837658,0.0004785847,0.000020012196],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005997256,0.0002228073,0.96964914,0.00011869261,0.00013484864,0.0064580846,0.00034481654,0.0000023460498,0.006422047,0.00013872953,0.009825566,0.0066229664],"study_design_scores_gemma":[0.006208525,0.0014643818,0.330608,0.0008460454,0.00023701823,0.015481834,0.00024743495,0.00001311224,0.00008771889,0.00028183532,0.64413315,0.00039091212],"about_ca_topic_score_codex":0.0007550692,"about_ca_topic_score_gemma":0.051660582,"teacher_disagreement_score":0.6390411,"about_ca_system_score_codex":0.00018174104,"about_ca_system_score_gemma":0.0010793095,"threshold_uncertainty_score":0.99932885},"labels":[],"label_agreement":null},{"id":"W2316003558","doi":"","title":"Population Incidence of Community-Acquired Pneumonia Requiring Hospitalization in a Region of Canada","year":2008,"lang":"en","type":"article","venue":"46th Annual Meeting","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Incidence (geometry); Pneumonia; Community-acquired pneumonia; Medicine; Population; Demography; Geography; Environmental health; Internal medicine","score_opus":0.020327889640989222,"score_gpt":0.2594829540127023,"score_spread":0.2391550643717131,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2316003558","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99864215,0.000044595035,0.00006953603,0.00020185595,0.00008905829,0.0001557057,0.000004121538,0.000019073053,0.0007738916],"genre_scores_gemma":[0.99972415,0.000015634114,0.000059024373,0.00010957457,0.000029080511,0.0000054870848,0.00001282304,0.000010447898,0.00003378939],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99897677,0.00014985063,0.0004244117,0.00008029518,0.00021662314,0.00015203426],"domain_scores_gemma":[0.9992486,0.000086981,0.00023900124,0.00018779167,0.00018104854,0.000056543227],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026090036,0.00008222598,0.00024330257,0.0001413724,0.00016434432,0.0000015313759,0.00005990668,0.00005951594,0.0000017790427],"category_scores_gemma":[0.0006572476,0.00008176013,0.000032798238,0.00038754192,0.000058328766,0.00013044715,0.000033182834,0.00012881478,1.9312432e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026991389,0.000074525175,0.96277064,0.00015557186,0.000008594097,0.000035817422,0.0033719353,0.00085301866,0.03223291,0.00004727022,0.00005083496,0.00037190004],"study_design_scores_gemma":[0.00038401768,0.00018070788,0.9933081,0.0005109629,0.000012805106,0.00010742489,0.0015418082,0.00027249462,0.0034897458,0.00003107767,0.00008251026,0.00007830388],"about_ca_topic_score_codex":0.2402347,"about_ca_topic_score_gemma":0.10350634,"teacher_disagreement_score":0.13672836,"about_ca_system_score_codex":0.0001299674,"about_ca_system_score_gemma":0.00022236207,"threshold_uncertainty_score":0.91285235},"labels":[],"label_agreement":null},{"id":"W2316645103","doi":"10.1097/qco.0b013e328343b6f8","title":"How important is age in defining the prognosis of patients with community-acquired pneumonia?","year":2011,"lang":"en","type":"review","venue":"Current Opinion in Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; CARE Canada","funders":"","keywords":"Medicine; Confounding; Observational study; Pneumonia; Community-acquired pneumonia; Intensive care medicine; Disease; Pneumonia severity index; Diabetes mellitus; Health care; Population; Severity of illness; Pediatrics; Emergency medicine; Gerontology; Internal medicine; Environmental health","score_opus":0.07310044410318466,"score_gpt":0.3473544507280229,"score_spread":0.27425400662483823,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2316645103","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.008579833,0.98664206,0.0000028439222,0.000028070612,0.0016216041,0.0024970435,0.00041889228,0.00008564769,0.0001240077],"genre_scores_gemma":[0.030283052,0.96767336,0.0000012643476,0.000028398357,0.000101330545,0.0011059612,0.00072680064,0.00007307979,0.0000067576925],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.99736834,0.00061889424,0.00094655575,0.00036714875,0.00031453872,0.000384553],"domain_scores_gemma":[0.9978448,0.00029771074,0.0008146304,0.0007212775,0.00015158573,0.00017000463],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00022286538,0.0005390075,0.0015744889,0.0006978787,0.00020489571,0.000052225918,0.00025601906,0.00020581107,0.000025078321],"category_scores_gemma":[0.00021246115,0.00032717382,0.00048016815,0.0011032859,0.0003118086,0.00012962433,0.0001424651,0.00088493543,0.000006952578],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018438786,0.0028511884,0.82942164,0.024880085,0.0001545596,0.0000036874949,0.00033864076,2.337278e-7,8.700659e-8,0.00009332896,0.0001473517,0.14209072],"study_design_scores_gemma":[0.0015595686,0.00080416945,0.21162558,0.05127661,0.0009229119,0.000017871993,0.00008478147,0.0000015581195,3.1930946e-7,0.00006231067,0.73316693,0.00047737238],"about_ca_topic_score_codex":0.00006684074,"about_ca_topic_score_gemma":0.000059903665,"teacher_disagreement_score":0.7330196,"about_ca_system_score_codex":0.00021664299,"about_ca_system_score_gemma":0.0004894709,"threshold_uncertainty_score":0.99991804},"labels":[],"label_agreement":null},{"id":"W2316748975","doi":"10.1093/cid/ciw204","title":"Finding the Pathogen in Community-acquired Pneumonia","year":2016,"lang":"en","type":"letter","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Pathogen; Pathogenic organism; Intensive care medicine; Microbiology; Immunology; Virology; Internal medicine; Biology","score_opus":0.07137234089209249,"score_gpt":0.3811562738083212,"score_spread":0.3097839329162287,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2316748975","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.27101573,0.0005962198,0.000028900668,0.7131577,0.0039121546,0.001688955,0.00059165934,0.0006519157,0.008356726],"genre_scores_gemma":[0.2564354,0.0005362766,6.197414e-7,0.73145854,0.009056143,0.00029339216,0.00024858952,0.00011969348,0.0018513168],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.99521816,0.002121828,0.0011399045,0.00049764774,0.000363117,0.0006593697],"domain_scores_gemma":[0.9936298,0.004171325,0.00038978885,0.0014120562,0.00014275023,0.00025428558],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0008279312,0.0004791732,0.0010686524,0.00029663724,0.0006037195,0.000077093035,0.00038621348,0.0011641204,0.00027722178],"category_scores_gemma":[0.0021527659,0.0002799507,0.00093085493,0.0003872402,0.0008176934,0.000089930625,0.0002339462,0.0037449098,0.0005415026],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018067632,0.0006208181,0.58831,0.00026590188,0.00029100408,0.0009622901,0.000050966086,0.0000013349022,0.0002813554,0.000012883526,0.40283516,0.006350218],"study_design_scores_gemma":[0.0011634576,0.0004904574,0.33258522,0.0005733437,0.00044118814,0.000059582846,0.00001786247,0.000003848653,0.0000020413845,0.0006230402,0.66374403,0.00029595286],"about_ca_topic_score_codex":0.000048052236,"about_ca_topic_score_gemma":0.00006816334,"teacher_disagreement_score":0.26090887,"about_ca_system_score_codex":0.00022945444,"about_ca_system_score_gemma":0.00046076017,"threshold_uncertainty_score":0.99996525},"labels":[],"label_agreement":null},{"id":"W2316751401","doi":"10.1056/nejm200003093421002","title":"Cigarette Smoking and Invasive Pneumococcal Disease","year":2000,"lang":"en","type":"article","venue":"New England Journal of Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":802,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Mount Sinai Hospital","funders":"","keywords":"Medicine; Odds ratio; Confidence interval; Risk factor; Population; Case-control study; Behavioral Risk Factor Surveillance System; Pneumococcal infections; Passive smoking; Pediatrics; Internal medicine; Environmental health; Demography; Streptococcus pneumoniae","score_opus":0.016128389335984032,"score_gpt":0.2682602396337625,"score_spread":0.25213185029777846,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2316751401","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96682876,0.0016115136,0.000031489653,0.028491415,0.00031555528,0.000090463946,0.0000012908928,0.000013964085,0.002615546],"genre_scores_gemma":[0.990922,0.0012349049,0.000014306936,0.002875273,0.004064154,7.8398654e-7,0.0000018586547,0.000012576151,0.000874143],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.99898535,0.00005551662,0.00036591964,0.000105793326,0.00033119824,0.00015621277],"domain_scores_gemma":[0.9987548,0.00015725513,0.000119333374,0.000118479584,0.00009936382,0.000750796],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00033979243,0.00012179574,0.00034609114,0.00016281514,0.00007583513,0.000008180255,0.000051657727,0.00005013571,0.0009755589],"category_scores_gemma":[0.00035746285,0.000074714335,0.00006490093,0.00013043144,0.00013625488,0.000086895794,0.000008296538,0.00039804497,0.000004015322],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016027845,0.00018717526,0.29720682,0.00014940211,0.0005397357,0.0047892,0.0019005688,0.00005896425,0.05194023,0.0001327926,0.0074840724,0.6340082],"study_design_scores_gemma":[0.04006063,0.0020501765,0.6350392,0.0012746146,0.0010624101,0.007419634,0.00011101037,0.000021730464,0.00024518283,0.0007128286,0.3118581,0.00014451542],"about_ca_topic_score_codex":0.000011603796,"about_ca_topic_score_gemma":0.000005994031,"teacher_disagreement_score":0.63386375,"about_ca_system_score_codex":0.000028799988,"about_ca_system_score_gemma":0.0002299695,"threshold_uncertainty_score":0.9999377},"labels":[],"label_agreement":null},{"id":"W2317181755","doi":"10.1139/cjpp-2013-0227","title":"Immune response in nasopharynx, lung, and blood elicited by experimental nasal pneumococcal vaccines containing live or heat-killed lactobacilli as mucosal adjuvants","year":2014,"lang":"en","type":"article","venue":"Canadian Journal of Physiology and Pharmacology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Immune system; Immunology; Adjuvant; Lactobacillus casei; Antibody; Antigen; Immunoglobulin A; Biology; Respiratory tract; Immunoglobulin G; Respiratory system; Bacteria","score_opus":0.009981608655835014,"score_gpt":0.29504498882278746,"score_spread":0.28506338016695243,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2317181755","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99516696,0.0025413297,0.0000012165318,0.0013502245,0.0006515079,0.00021436381,0.000016700567,0.000008184894,0.000049487575],"genre_scores_gemma":[0.9966227,0.00018939335,0.0000074837412,0.0027765364,0.00029450256,0.000013255646,0.000007456507,0.000017952683,0.00007076267],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99830663,0.0005698797,0.0004380625,0.00021836528,0.00005727067,0.00040976706],"domain_scores_gemma":[0.9986418,0.00037422054,0.00013876765,0.000076537515,0.00010028779,0.0006683863],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003828298,0.0002086731,0.0006141108,0.00036389593,0.00019873101,0.000009676321,0.000087034336,0.00022151768,0.0009637243],"category_scores_gemma":[0.00015137903,0.00016299567,0.00006964469,0.00013271807,0.00026484477,0.00009869394,0.000022991933,0.0005553992,0.000005733268],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005163798,0.00013078246,0.02005595,0.000030646308,0.00023024785,0.00052682275,0.0007432211,0.000007342952,0.97252804,0.000013006202,0.0004835085,0.00008665711],"study_design_scores_gemma":[0.035354547,0.020774715,0.55543095,0.0002178124,0.0006756041,0.009952826,0.0013089585,0.0007371792,0.36388972,0.00008683586,0.0109347375,0.0006361364],"about_ca_topic_score_codex":0.0006127233,"about_ca_topic_score_gemma":0.00038296386,"teacher_disagreement_score":0.6086383,"about_ca_system_score_codex":0.00007416116,"about_ca_system_score_gemma":0.00065583235,"threshold_uncertainty_score":0.9999495},"labels":[],"label_agreement":null},{"id":"W2318206378","doi":"10.1155/2001/984958","title":"Reduced Susceptibility to Penicillin among Pneumococci Causing Invasive Infection in Children ‐ Canada, 1991‐1998","year":2001,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Centre for Disease Control; Provincial Laboratory of Public Health; Canadian Paediatric Society","funders":"","keywords":"Penicillin; Serotype; Streptococcus pneumoniae; Pneumococcal conjugate vaccine; Antibiotics; Microbiology; Medicine; Conjugate vaccine; Pneumococcal infections; Cephalosporin; Antibiotic resistance; Virology; Biology","score_opus":0.006217095691754325,"score_gpt":0.23237751144846744,"score_spread":0.2261604157567131,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2318206378","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967759,0.00031086453,0.000014917124,0.0017304086,0.0006372959,0.00033846227,0.00004549661,0.00001107923,0.00013552312],"genre_scores_gemma":[0.9964352,0.0002951237,0.0000022685706,0.0028499996,0.00033905532,0.0000073590236,0.000028580629,0.000015625152,0.000026772712],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99846023,0.00015264771,0.00055237144,0.00025128684,0.00010803441,0.00047541523],"domain_scores_gemma":[0.9971846,0.00010725694,0.00015852068,0.00014795522,0.000169245,0.0022324207],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025198984,0.00019255155,0.00047873225,0.0005241121,0.00019030443,0.000020412353,0.00006519724,0.0002267642,0.00020094191],"category_scores_gemma":[0.0012700397,0.00016234582,0.0001200837,0.0003944936,0.00027074196,0.0000735873,0.000022387205,0.00053445966,0.0000041808744],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002730375,0.00007489157,0.98964626,0.00002112014,0.000102466234,0.0007798382,0.000072409784,0.000038901406,0.0066874726,0.0000058647183,0.0009025417,0.0016409566],"study_design_scores_gemma":[0.0011990039,0.0005092724,0.9814153,0.00023339294,0.00012531962,0.00891433,0.000038970098,0.000004377643,0.00007907277,0.000025279835,0.0072936825,0.0001620387],"about_ca_topic_score_codex":0.7583076,"about_ca_topic_score_gemma":0.98766524,"teacher_disagreement_score":0.2293577,"about_ca_system_score_codex":0.0008567092,"about_ca_system_score_gemma":0.006442697,"threshold_uncertainty_score":0.99918985},"labels":[],"label_agreement":null},{"id":"W2319227120","doi":"10.1155/2000/181063","title":"Keeping Up-to-Date","year":2000,"lang":"en","type":"editorial","venue":"Canadian Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Publication; Statement (logic); Pneumonia; Public relations; Internet privacy; Law; Computer science","score_opus":0.01900118744736936,"score_gpt":0.2900820305145178,"score_spread":0.27108084306714847,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2319227120","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004977697,0.0009140982,0.000017605646,0.0012655235,0.9639199,0.0005224707,0.0003004373,0.0000947919,0.027987488],"genre_scores_gemma":[0.0012892468,0.00021072278,0.000020449186,0.016759574,0.9734195,0.00003596035,0.000061017116,0.00020464357,0.007998921],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9961172,0.00020643746,0.0008660799,0.0005789724,0.0009954154,0.0012359269],"domain_scores_gemma":[0.9930534,0.00014133935,0.00025403046,0.0007191421,0.00067451753,0.00515762],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.00074678776,0.0005693147,0.00090671104,0.0022265138,0.0010050705,0.00030601324,0.0004520554,0.0014618061,0.0024889128],"category_scores_gemma":[0.0009923804,0.00054926163,0.00047951264,0.00059538917,0.00011696054,0.00014383232,0.00003098254,0.0042603402,0.0020889777],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004359798,0.000014510868,0.00028375274,0.000054771328,0.00018293559,0.0025488962,0.00013576171,0.000017471093,0.00034318396,0.0000053219924,0.98980546,0.0065643224],"study_design_scores_gemma":[0.0009839223,0.00047875705,0.0003909676,0.0006560995,0.00024586872,0.00053279917,0.00004576286,0.0000017654168,0.000034474328,0.000018469917,0.99606264,0.00054845546],"about_ca_topic_score_codex":0.0024174117,"about_ca_topic_score_gemma":0.023972386,"teacher_disagreement_score":0.021554975,"about_ca_system_score_codex":0.0014917835,"about_ca_system_score_gemma":0.018882591,"threshold_uncertainty_score":0.9998345},"labels":[],"label_agreement":null},{"id":"W2319607232","doi":"10.1093/ofid/ofv133.1441","title":"Economic Analysis of Pneumococcal Vaccination for Elderly Adults in Quebec: Forecasting Invasive Pneumococcal Disease (IPD) Rates of and Serotype Distribution","year":2015,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Pneumococcal disease; Medicine; Serotype; Pneumococcal vaccination; Vaccination; Disease; Pneumococcal infections; Pediatrics; Streptococcus pneumoniae; Virology; Environmental health; Internal medicine; Microbiology; Antibiotics; Biology","score_opus":0.02920071935090028,"score_gpt":0.3144285042948425,"score_spread":0.2852277849439422,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2319607232","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966396,0.00011728427,0.0001791224,0.00033193795,0.00009866641,0.0016006754,0.00074639695,0.000026318827,0.00025999214],"genre_scores_gemma":[0.9987182,0.000029986048,0.0000063579287,0.000042639724,0.000032872238,0.00031046916,0.0007890772,0.000019247642,0.00005113778],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99864304,0.00008350938,0.00054739864,0.00034965278,0.00012043014,0.0002559953],"domain_scores_gemma":[0.9985074,0.00025583027,0.00034029054,0.00024439592,0.00030408596,0.00034802148],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018872735,0.00019752463,0.00061676017,0.00039336726,0.00010315052,0.00005698578,0.000107888685,0.000088450055,0.000029086043],"category_scores_gemma":[0.00075326813,0.00018326411,0.00021848663,0.0005175155,0.000077943674,0.0004631667,0.00011305892,0.000084528365,0.000002191707],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000720133,0.00055326003,0.9907421,0.00020778924,0.00037661724,0.0000060259395,0.00013327865,0.0019168274,0.00061145367,0.0005093664,0.000072418785,0.004150737],"study_design_scores_gemma":[0.0034667838,0.0010269668,0.98065186,0.0001890259,0.001434837,0.0000051490347,0.00047593025,0.0112536205,0.0004593959,0.0007012814,0.00014510883,0.00019003131],"about_ca_topic_score_codex":0.0036534856,"about_ca_topic_score_gemma":0.02766708,"teacher_disagreement_score":0.024013594,"about_ca_system_score_codex":0.00026745276,"about_ca_system_score_gemma":0.0006079203,"threshold_uncertainty_score":0.99007547},"labels":[],"label_agreement":null},{"id":"W2320124159","doi":"10.1155/2003/392417","title":"Community‐Acquired Pneumonia in Children: A Multidisciplinary Consensus Review","year":2003,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen Elizabeth II Health Sciences Centre; Université Laval; Centre hospitalier universitaire de Québec; Hospital for Sick Children; Dalhousie University; University of Toronto; SickKids Foundation; Alberta Children's Hospital; Children's Hospital of Eastern Ontario; University of Calgary","funders":"","keywords":"Community-acquired pneumonia; Etiology; Medicine; Intensive care medicine; Pneumonia; Referral; Multidisciplinary approach; MEDLINE; Emergency department; Pediatrics; Family medicine; Pathology; Internal medicine; Psychiatry; Political science","score_opus":0.009229981234123472,"score_gpt":0.2627105497571412,"score_spread":0.2534805685230177,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2320124159","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97160476,0.024109561,0.000005199171,0.0032793481,0.00031707386,0.00024334209,0.000036659767,0.000009152937,0.00039486974],"genre_scores_gemma":[0.9914338,0.003533268,0.000006353792,0.004903202,0.00006830048,0.0000054643815,0.00001157287,0.000012313239,0.000025737523],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985023,0.0005094157,0.00049516634,0.00011402437,0.00005917339,0.00031988704],"domain_scores_gemma":[0.99806833,0.0001261616,0.00014791175,0.00015316518,0.00013074047,0.0013736986],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046574866,0.0001493742,0.00051808846,0.00032087526,0.00021370234,0.0000079668125,0.00007763515,0.00017732831,0.00028625425],"category_scores_gemma":[0.0015890497,0.00011569344,0.00014792054,0.00022226562,0.000514226,0.000023907205,0.000014578795,0.00055222854,0.0000074989603],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012853485,0.00022463145,0.991951,0.00022936039,0.00012994948,0.00069947966,0.0000763702,0.0000013115437,0.003023747,0.00010855586,0.0016465713,0.0018961659],"study_design_scores_gemma":[0.004001577,0.0013600766,0.8717556,0.0031981317,0.00038847578,0.0847545,0.00015311487,0.0000024518872,0.00003322829,0.0002283491,0.03386773,0.0002567529],"about_ca_topic_score_codex":0.0013072607,"about_ca_topic_score_gemma":0.005607095,"teacher_disagreement_score":0.120195396,"about_ca_system_score_codex":0.00013726026,"about_ca_system_score_gemma":0.0023604776,"threshold_uncertainty_score":0.47178414},"labels":[],"label_agreement":null},{"id":"W2320772040","doi":"10.1097/00001432-200004000-00009","title":"Trends and significance of antimicrobial resistance in respiratory pathogens","year":2000,"lang":"en","type":"article","venue":"Current Opinion in Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Medicine; Antimicrobial; Respiratory system; Antibiotic resistance; Drug resistance; Intensive care medicine; Microbiology; Antibiotics; Internal medicine; Biology","score_opus":0.02598099893681293,"score_gpt":0.31609775530788037,"score_spread":0.29011675637106743,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2320772040","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99223787,0.0042986395,0.0000056047465,0.00013919028,0.0007909892,0.00025884697,0.00010686261,0.00005969273,0.0021023105],"genre_scores_gemma":[0.9979127,0.0016715284,0.0000026676878,0.0000735074,0.00017673797,0.000064133244,0.000019398945,0.000014882011,0.000064435655],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988655,0.000099679775,0.0003959319,0.00029635098,0.00013090063,0.00021162805],"domain_scores_gemma":[0.9994842,0.00006209897,0.0000791209,0.00021002718,0.00004292641,0.00012164693],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008814588,0.00015165302,0.0003023609,0.0004936329,0.00005490204,0.000010640419,0.00004283892,0.00006761241,0.00018937685],"category_scores_gemma":[0.00006411681,0.00014758186,0.000086306194,0.0007029564,0.00017057182,0.000090634225,0.000014657808,0.00018566963,0.000009278796],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009067424,0.0009434842,0.9666675,0.0006478527,0.000011231872,0.000006546398,0.00012897191,0.00005144427,0.0027536936,0.00017706821,0.0013611775,0.027160406],"study_design_scores_gemma":[0.0017764745,0.00011803086,0.9406937,0.00083380303,0.000022300781,0.000005590388,0.000010132907,0.000009746705,0.0001000334,0.000095515265,0.0561802,0.00015446528],"about_ca_topic_score_codex":0.000012496579,"about_ca_topic_score_gemma":0.000054422835,"teacher_disagreement_score":0.054819025,"about_ca_system_score_codex":0.00007970343,"about_ca_system_score_gemma":0.00012723613,"threshold_uncertainty_score":0.60182136},"labels":[],"label_agreement":null},{"id":"W2322064713","doi":"10.1155/2005/905970","title":"Private Costs of Patients Hospitalized with Community‐Acquired Pneumonia","year":2005,"lang":"en","type":"article","venue":"Canadian Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta","funders":"Alberta Heritage Foundation for Medical Research; Bayer HealthCare","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Intensive care medicine; MEDLINE; Emergency medicine; Medical emergency; Internal medicine","score_opus":0.01584937634885954,"score_gpt":0.2527453923865766,"score_spread":0.23689601603771707,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2322064713","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949645,0.00008274323,0.000026724843,0.00066394627,0.00017520094,0.0003117089,0.00004180336,0.000028068755,0.0037053225],"genre_scores_gemma":[0.99452513,0.0000129156615,0.00009512252,0.0049825343,0.00021264583,0.000009389865,0.000010087126,0.00004297602,0.00010921534],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99827576,0.00024789182,0.00050139014,0.00013892424,0.00035577297,0.00048029024],"domain_scores_gemma":[0.99747765,0.000030794323,0.00026930653,0.00044388548,0.00049411453,0.0012842525],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038655757,0.00021809271,0.00038184645,0.00057216577,0.00061289663,0.00004430364,0.00021715852,0.00014518175,0.00020659773],"category_scores_gemma":[0.0001055867,0.00017345445,0.00013421933,0.00035962265,0.00022801592,0.00021287643,0.000020899754,0.000647584,0.0000466515],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012992616,0.00032454118,0.9780701,0.000044080727,0.00021255286,0.00017039815,0.0003802161,0.00005407825,0.009726231,0.00019548032,0.0014168966,0.009275544],"study_design_scores_gemma":[0.0031187513,0.0013904186,0.76960623,0.0002521505,0.00010400383,0.00020642823,0.000068194466,0.000007964557,0.0009565263,0.000015953994,0.22405829,0.00021508888],"about_ca_topic_score_codex":0.0010904702,"about_ca_topic_score_gemma":0.010497773,"teacher_disagreement_score":0.22264138,"about_ca_system_score_codex":0.0008198923,"about_ca_system_score_gemma":0.0014158476,"threshold_uncertainty_score":0.7073267},"labels":[],"label_agreement":null},{"id":"W2322874922","doi":"","title":"Impact of 7-Valent Pneumococcal Conjugate (PCV7) on Serotype Distribution and Susceptibility Profiles of Invasive S. pneumoniae (I Sp ) Isolates in Quebec","year":2008,"lang":"en","type":"article","venue":"46th Annual Meeting","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Serotype; Pneumococcal conjugate vaccine; Streptococcus pneumoniae; Microbiology; Conjugate; Pneumococcal disease; Biology; Virology; Medicine; Antibiotics; Mathematics","score_opus":0.016473270215869185,"score_gpt":0.28425885783314275,"score_spread":0.26778558761727356,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2322874922","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986211,0.000068757734,0.0000034792306,0.00017441886,0.000057948728,0.0005331907,0.00022271022,0.000031202264,0.00028717384],"genre_scores_gemma":[0.9997153,0.00008019405,0.000011300455,0.000025333515,0.000051675543,0.000015466792,0.000045108398,0.00001391665,0.000041680287],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985815,0.00014040871,0.0005301554,0.0002892897,0.00017567398,0.00028293944],"domain_scores_gemma":[0.9989265,0.00022490644,0.00023508447,0.00021343183,0.00025418756,0.00014588794],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030188833,0.00019342056,0.0004694826,0.0001281139,0.00009958112,0.0000051445027,0.00005497411,0.00013510477,0.000013985611],"category_scores_gemma":[0.0007480446,0.00015092963,0.00013976754,0.0002653681,0.00028529644,0.00012347019,0.000047750586,0.00026956113,0.0000049638084],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017457233,0.0002905034,0.7237269,0.00016457192,0.000033156255,0.000017458913,0.0009821083,0.00009787221,0.2741788,0.000015243678,0.000028126438,0.00029067183],"study_design_scores_gemma":[0.00086912554,0.0017494985,0.9553065,0.00045217152,0.000032005493,0.000051403138,0.0004510232,0.000076589575,0.04083224,0.00001621054,0.000037632148,0.0001256533],"about_ca_topic_score_codex":0.0045354273,"about_ca_topic_score_gemma":0.0019406821,"teacher_disagreement_score":0.23334657,"about_ca_system_score_codex":0.00015492746,"about_ca_system_score_gemma":0.00030415872,"threshold_uncertainty_score":0.68562394},"labels":[],"label_agreement":null},{"id":"W2323048672","doi":"10.1093/cid/ciw050","title":"Whole-Genome Sequencing Reveals the Origin and Rapid Evolution of an Emerging Outbreak Strain of<i>Streptococcus pneumoniae</i>12F","year":2016,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Calgary Laboratory Services; University of Manitoba; Winnipeg Regional Health Authority; University of Calgary; University of Toronto; University Health Network","funders":"","keywords":"Outbreak; Streptococcus pneumoniae; Biology; Drug resistance; Serotype; Genome; Strain (injury); Virulence; clone (Java method); Pneumolysin; Whole genome sequencing; Virology; Microbiology; Genetics; Gene; Antibiotics","score_opus":0.04597587254686632,"score_gpt":0.35505454417010696,"score_spread":0.30907867162324065,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2323048672","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99668866,0.00047977813,0.000283266,0.0008509679,0.00029803542,0.0005487185,0.00034529023,0.00011706784,0.00038822892],"genre_scores_gemma":[0.99896866,0.00021389511,0.0000047485705,0.0002591012,0.00037111336,0.000044905682,0.000012402658,0.000025000809,0.00010016057],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.997832,0.0003743885,0.00091407786,0.0003800154,0.00022722666,0.0002722655],"domain_scores_gemma":[0.99774873,0.0007307611,0.0004050135,0.0005490336,0.00022752045,0.00033892796],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006485276,0.0002013358,0.0005712302,0.00013908575,0.00017126101,0.000014107478,0.000107733555,0.00014581006,0.00006936445],"category_scores_gemma":[0.0011530237,0.00011474956,0.0003058327,0.0002775847,0.0007181406,0.00018230923,0.0000638477,0.00020735047,0.000013100445],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023139652,0.0003846922,0.7236348,0.00010685364,0.00014424555,0.000011472044,0.00005640279,0.000015274858,0.25936508,0.00032877622,0.00003587007,0.015893409],"study_design_scores_gemma":[0.0016281548,0.0014538729,0.9904967,0.0002934834,0.00045635484,0.000029165656,0.00018801197,0.000039247683,0.000267977,0.0015137496,0.0034529415,0.00018035735],"about_ca_topic_score_codex":0.00002498924,"about_ca_topic_score_gemma":0.00002475597,"teacher_disagreement_score":0.26686192,"about_ca_system_score_codex":0.000118983604,"about_ca_system_score_gemma":0.00034616765,"threshold_uncertainty_score":0.46793512},"labels":[],"label_agreement":null},{"id":"W2323148328","doi":"10.1055/s-0032-1315636","title":"The Role of Atypical Pathogens in Community-Acquired Pneumonia","year":2012,"lang":"en","type":"review","venue":"Seminars in Respiratory and Critical Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen Elizabeth II Health Sciences Centre; Alberta Hospital Edmonton; University of Alberta; Dalhousie University","funders":"","keywords":"Mycoplasma pneumoniae; Pneumonia; Atypical pneumonia; Medicine; Legionella; Legionella pneumophila; Chlamydophila pneumoniae; Bacterial pneumonia; Community-acquired pneumonia; Viral pneumonia; Procalcitonin; Legionnaires' disease; Mycoplasma; Mycoplasma pneumonia; Mycoplasmataceae; Virology; Chlamydia; Immunology; Microbiology; Mollicutes; Coronavirus disease 2019 (COVID-19); Sepsis; Biology; Infectious disease (medical specialty); Internal medicine; Bacteria; Disease; Chlamydiaceae","score_opus":0.05120758341349357,"score_gpt":0.37469246130566114,"score_spread":0.32348487789216757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2323148328","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0066471254,0.99001324,9.1878996e-7,0.00020566792,0.0003402206,0.0007060476,0.000033873734,0.000026545864,0.002026356],"genre_scores_gemma":[0.079846986,0.91910434,0.0000067679275,0.00038474216,0.0003632698,0.00018741682,0.00002692506,0.00005666693,0.000022914051],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9958637,0.0014893657,0.0012855293,0.00033706354,0.0004158214,0.0006085717],"domain_scores_gemma":[0.995848,0.0026721077,0.00015498039,0.00078326097,0.00016729427,0.00037437637],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0016198803,0.00047613282,0.0020740135,0.00043203853,0.0002942563,0.000011084596,0.00027134642,0.0006687506,0.000039773182],"category_scores_gemma":[0.0018038771,0.00029176974,0.00024716984,0.00068746344,0.0019141511,0.000058184425,0.00018484503,0.0017717155,0.0000078158755],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005985021,0.00025213129,0.008497887,0.016153706,0.00003772523,0.00017058734,0.0013364077,4.5316305e-8,0.0004441938,0.0014977247,0.000022329137,0.9715274],"study_design_scores_gemma":[0.00054921955,0.001153501,0.0031703333,0.026518604,0.000863658,0.0001928074,0.006085864,7.940049e-7,0.0000111356585,0.00018106085,0.9610132,0.00025979624],"about_ca_topic_score_codex":0.000029973797,"about_ca_topic_score_gemma":0.00013209548,"teacher_disagreement_score":0.97126764,"about_ca_system_score_codex":0.00019246478,"about_ca_system_score_gemma":0.00029806088,"threshold_uncertainty_score":0.99995345},"labels":[],"label_agreement":null},{"id":"W2323149762","doi":"","title":"Activity of Nemonoxacin, an Investigational C8-methoxy Non-fluorinated Quinolone Against Gram-Positive Cocci Obtained From Canadian Hospitals: CANWARD 2007","year":2008,"lang":"en","type":"article","venue":"46th Annual Meeting","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Gram-Positive Cocci; Quinolone; Gram; Medicine; Antibiotics; Microbiology; Biology; Bacteria; Staphylococcus aureus","score_opus":0.015334803269926957,"score_gpt":0.2645919912206355,"score_spread":0.24925718795070853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2323149762","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99326175,0.000076967255,0.00007888481,0.0009779657,0.00038124504,0.00043766486,0.0006126387,0.00009640987,0.0040764865],"genre_scores_gemma":[0.9970653,0.000026986445,0.00092297455,0.0011191653,0.0004349767,0.000023883704,0.00025035316,0.000037786132,0.0001185415],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9980722,0.00021179322,0.000407299,0.00043210044,0.00033678772,0.00053981546],"domain_scores_gemma":[0.99777144,0.00019758206,0.00023300867,0.00031895563,0.00061319105,0.00086583116],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003336138,0.0002765304,0.0005003024,0.0003231922,0.00048457427,0.000014364302,0.00012962478,0.00025015065,0.000034538127],"category_scores_gemma":[0.0007226783,0.00027150562,0.00012027478,0.0004965437,0.00032836013,0.0002991945,0.000036550387,0.0004608823,0.000025131802],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015509193,0.00037060172,0.66959274,0.000066294626,0.0003406382,0.00047097376,0.006380594,0.00039612767,0.31442013,0.000050481434,0.0017132862,0.006043023],"study_design_scores_gemma":[0.0014097055,0.0007282744,0.9380255,0.00026614757,0.00010000303,0.000051884253,0.0011955745,0.00088146626,0.054870915,0.00004290371,0.0020498782,0.0003777749],"about_ca_topic_score_codex":0.12937254,"about_ca_topic_score_gemma":0.015034723,"teacher_disagreement_score":0.26843274,"about_ca_system_score_codex":0.00028456713,"about_ca_system_score_gemma":0.0013187029,"threshold_uncertainty_score":0.9999737},"labels":[],"label_agreement":null},{"id":"W2325110277","doi":"10.1139/cjm-2013-0361","title":"<i>Lactobacillus rhamnosus</i> CRL1505 beneficially modulates the immuno-coagulative response after pneumococcal infection in immunocompromised malnourished mice","year":2013,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Lactobacillus rhamnosus; Immunology; Immune system; Streptococcus pneumoniae; Microbiology; Inflammation; Medicine; Lung; Coagulation; Biology; Lactobacillus; Internal medicine; Antibiotics; Bacteria","score_opus":0.007869446130251718,"score_gpt":0.2195466210295016,"score_spread":0.21167717489924986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2325110277","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9924207,0.00072519487,0.000014397702,0.0053798566,0.0007220658,0.0005564165,0.000022901164,0.000009642983,0.00014886033],"genre_scores_gemma":[0.99816614,0.000045828674,0.000028608993,0.0013258153,0.00016565289,0.000030390536,0.000007221037,0.000024710516,0.00020560657],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99807817,0.00049386994,0.00069043104,0.00018774494,0.000053571715,0.00049623643],"domain_scores_gemma":[0.9985314,0.00021288064,0.00028367352,0.00025289474,0.00041574877,0.0003034008],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00058953627,0.00022663131,0.00046635684,0.0005910775,0.00019211283,0.000049782095,0.00017554656,0.00029116828,0.00048125844],"category_scores_gemma":[0.00023263173,0.00015695013,0.00023595431,0.00033003528,0.00031858205,0.00015605081,0.000021540734,0.00077513995,0.00009542185],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00056886754,0.000050900886,0.08630676,0.000009920459,0.00012404677,0.00018841894,0.00068138685,0.00013160422,0.91121817,0.000005363674,0.0002694669,0.00044506806],"study_design_scores_gemma":[0.0018280359,0.00068528234,0.9647691,0.00013337507,0.00007037877,0.0038141746,0.00013211952,0.000018958386,0.008272605,0.00008443329,0.02000469,0.00018683885],"about_ca_topic_score_codex":0.00854876,"about_ca_topic_score_gemma":0.02044535,"teacher_disagreement_score":0.9029456,"about_ca_system_score_codex":0.00047470178,"about_ca_system_score_gemma":0.0015302871,"threshold_uncertainty_score":0.9980534},"labels":[],"label_agreement":null},{"id":"W2325834977","doi":"10.1038/mtm.2014.5","title":"Type 1 interferon gene transfer enhances host defense against pulmonary Streptococcus pneumoniae infection via activating innate leukocytes","year":2014,"lang":"en","type":"article","venue":"Molecular Therapy — Methods & Clinical Development","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; McMaster University Medical Centre","funders":"","keywords":"Pneumococcal pneumonia; Streptococcus pneumoniae; Immunology; Biology; Innate immune system; Interferon; Immune system; Pneumonia; Pneumococcal infections; Interferon gamma; Inflammation; Microbiology; Medicine; Antibiotics","score_opus":0.05999596307404485,"score_gpt":0.4004160799770817,"score_spread":0.3404201169030368,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2325834977","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.76196325,0.00022948356,0.2352088,0.0003053882,0.0007593861,0.0006236896,9.087165e-7,0.00017681804,0.0007322643],"genre_scores_gemma":[0.9642114,0.0008889879,0.030811368,0.0034557963,0.00022666482,0.00016881617,0.000034075016,0.000088613975,0.000114301765],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99549747,0.0016176867,0.0012496065,0.00076963136,0.00035959433,0.00050603884],"domain_scores_gemma":[0.99808884,0.00059308356,0.0001931097,0.00051438535,0.00028361814,0.00032694353],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0026741307,0.000457155,0.0007750055,0.00023072926,0.00028617444,0.00004983205,0.00016723787,0.00038657233,0.00007142173],"category_scores_gemma":[0.0005489586,0.00037256943,0.0003584218,0.00050826656,0.00016456001,0.000106035695,0.000071411254,0.0008105717,0.00007750052],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016059495,0.00033168876,0.012733505,0.00002587006,0.00025603856,0.000025169897,0.00014095464,0.000018410346,0.58635366,0.000010307387,0.0000027636265,0.399941],"study_design_scores_gemma":[0.001317569,0.0012391545,0.13641939,0.00016174212,0.000057860558,0.000025471176,0.000017815966,0.00039036176,0.79643005,0.00012724729,0.063337445,0.00047589064],"about_ca_topic_score_codex":0.000011351015,"about_ca_topic_score_gemma":0.000006674251,"teacher_disagreement_score":0.3994651,"about_ca_system_score_codex":0.00015959174,"about_ca_system_score_gemma":0.00029964448,"threshold_uncertainty_score":0.9998726},"labels":[],"label_agreement":null},{"id":"W2326029347","doi":"10.1016/j.meegid.2016.04.007","title":"Population structure and drug resistance patterns of emerging non-PCV-13 Streptococcus pneumoniae serotypes 22F, 15A, and 8 isolated from adults in Ontario, Canada","year":2016,"lang":"en","type":"article","venue":"Infection Genetics and Evolution","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hospital for Sick Children; Mount Sinai Hospital; University of Toronto; Public Health Ontario","funders":"University of Toronto; Public Health Agency of Canada; F. Hoffmann-La Roche; GlaxoSmithKline; Pfizer","keywords":"Serotype; Streptococcus pneumoniae; Biology; Population; Antibiotic resistance; Virology; Conjugate vaccine; Pneumococcal conjugate vaccine; Genome; Genetics; Microbiology; Antibiotics; Gene; Medicine","score_opus":0.003724934189340885,"score_gpt":0.2009433122687843,"score_spread":0.19721837807944342,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2326029347","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986835,0.0001783,0.0003597443,0.00023103476,0.00020721176,0.00026213287,0.0000485491,0.000012919468,0.000016585482],"genre_scores_gemma":[0.99960166,0.00017965856,0.000014799502,0.000026273581,0.000043800876,0.0000084719595,0.000021645554,0.000009997362,0.00009366397],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992257,0.000033192155,0.00025812714,0.00023704016,0.000113128524,0.00013284567],"domain_scores_gemma":[0.9995797,0.000027819966,0.000116698044,0.00011539273,0.00007898705,0.000081347025],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004593001,0.00012509325,0.00018237639,0.00011529887,0.00009293989,0.000010338913,0.000013958521,0.00009588167,0.000023490718],"category_scores_gemma":[0.000016732693,0.00010043501,0.000016770695,0.00009093468,0.000027854261,0.000074205745,0.000021072821,0.000118209435,1.6029112e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003929485,0.000016313588,0.9631392,0.000048649592,0.000020230573,0.0000019855443,0.00022630853,0.00004432112,0.03394078,0.0000067546944,0.000020010795,0.0024961848],"study_design_scores_gemma":[0.0009853618,0.000078744415,0.99663156,0.0003354326,0.00004058774,0.0000066435446,0.000052292085,0.00049335434,0.00077681174,0.0001855136,0.00029988232,0.00011381512],"about_ca_topic_score_codex":0.81368977,"about_ca_topic_score_gemma":0.99259543,"teacher_disagreement_score":0.17890564,"about_ca_system_score_codex":0.00022542592,"about_ca_system_score_gemma":0.000113698334,"threshold_uncertainty_score":0.40956208},"labels":[],"label_agreement":null},{"id":"W2326137081","doi":"10.1155/2003/781794","title":"Epidemiological and Economic Burden of Pneumococcal Disease in Canadian Children","year":2003,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Santé Montérégie; University of Manitoba; Health Canada; Université Laval; Université de Sherbrooke","funders":"","keywords":"Medicine; Epidemiology; Otitis; Pneumococcal infections; Vaccination; Streptococcus pneumoniae; Cohort; Incidence (geometry); Pediatrics; Pneumonia; Meningitis; Bacteremia; Disease burden; Pneumococcal conjugate vaccine; Environmental health; Immunology; Population; Internal medicine; Surgery","score_opus":0.006282328055856387,"score_gpt":0.23994604388394156,"score_spread":0.23366371582808518,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2326137081","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937308,0.0032974149,0.000003973391,0.002237943,0.00025724407,0.00014680246,0.000102627964,0.00000343242,0.00021978791],"genre_scores_gemma":[0.9981947,0.00069286465,0.0000036251704,0.000944168,0.0001338276,0.0000030761041,0.000009698558,0.000008353981,0.0000097172315],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987685,0.00018154472,0.00045328075,0.00016479447,0.00003224432,0.00039964344],"domain_scores_gemma":[0.99572575,0.00013253337,0.00011540148,0.00009037464,0.00005308306,0.0038828806],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033656138,0.0001357517,0.00048745758,0.00046055406,0.00008473874,0.0000074355635,0.000057671157,0.00020126392,0.00037870556],"category_scores_gemma":[0.0014843096,0.000103767605,0.00011149769,0.00008077836,0.00056264806,0.000035511006,0.000008210944,0.00031983524,0.0000033854444],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014848055,0.000027533411,0.9971206,0.000022869715,0.00006345547,0.0003293717,0.000029245646,0.000021213702,0.0004861372,0.0007715534,0.00016487716,0.0009482486],"study_design_scores_gemma":[0.0012620748,0.00039169713,0.97407466,0.0001232384,0.00010957122,0.004009985,0.00002530754,0.0000151248705,0.0000073803244,0.00034819636,0.019522162,0.0001106007],"about_ca_topic_score_codex":0.18035364,"about_ca_topic_score_gemma":0.33915088,"teacher_disagreement_score":0.15879723,"about_ca_system_score_codex":0.00023077709,"about_ca_system_score_gemma":0.005374242,"threshold_uncertainty_score":0.9533675},"labels":[],"label_agreement":null},{"id":"W2327562521","doi":"10.1016/j.amjms.2016.02.032","title":"Community-Acquired Pneumonia in Patients With Diabetes Mellitus: Predictors of Complications and Length of Hospital Stay","year":2016,"lang":"en","type":"article","venue":"The American Journal of the Medical Sciences","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Medicine; Pneumonia; Internal medicine; Odds ratio; Diabetes mellitus; Retrospective cohort study; Hazard ratio; Community-acquired pneumonia; Pneumonia severity index; Proportional hazards model; Emergency department; Cohort; Logistic regression; Complication; Surgery; Confidence interval","score_opus":0.010788180138126928,"score_gpt":0.25283790868398676,"score_spread":0.24204972854585982,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2327562521","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9841449,0.000051830415,0.000018974575,0.015512728,0.00008905558,0.00010866317,0.000006433313,0.0000027344238,0.00006463861],"genre_scores_gemma":[0.9996706,0.000057459267,0.000030425757,0.00021285197,0.000020580599,0.000001681575,8.529728e-8,0.000003223423,0.0000030383928],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984422,0.00034887556,0.00034732898,0.00005920149,0.00066582847,0.0001365689],"domain_scores_gemma":[0.9984905,0.000512477,0.0005642325,0.00019726757,0.00011378798,0.000121740624],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0011082392,0.000068588975,0.0002819946,0.000083019164,0.0001594135,0.0000045256215,0.00044650125,0.00001626786,0.000008092669],"category_scores_gemma":[0.0004978273,0.000022678123,0.00005378123,0.0004834525,0.0055300565,0.00007381477,0.00007929639,0.00017186173,2.4522672e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022512393,0.00029040882,0.98828185,0.000006187102,0.000044991022,3.4288757e-7,0.0005110532,0.000002262136,0.0018281416,0.00002869121,0.000010734136,0.00897284],"study_design_scores_gemma":[0.00058231375,0.0036636014,0.9939528,0.00039140682,0.00004279772,0.000006520638,0.00063648174,0.000008854812,0.0004135296,0.00013796694,0.00012981387,0.000033873202],"about_ca_topic_score_codex":0.000039741797,"about_ca_topic_score_gemma":0.000012799037,"teacher_disagreement_score":0.015525712,"about_ca_system_score_codex":0.000021963251,"about_ca_system_score_gemma":0.00017590357,"threshold_uncertainty_score":0.99717635},"labels":[],"label_agreement":null},{"id":"W232902513","doi":"","title":"Population-based incidence rate of invasive pneumococcal infection in children: Vancouver, 1994-1998.","year":2000,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Children's Hospital","funders":"","keywords":"Incidence (geometry); Pneumococcal infections; Medicine; Population; Streptococcus pneumoniae; Pneumococcal disease; Pediatrics; Biology; Environmental health; Microbiology; Antibiotics; Mathematics","score_opus":0.010283825169885283,"score_gpt":0.2287138338618883,"score_spread":0.21843000869200302,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W232902513","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976249,0.000021875,0.000011928457,0.000086110194,0.00020001891,0.000964928,0.000007417528,0.00006455377,0.0010182756],"genre_scores_gemma":[0.9984846,0.000047282785,0.000008548878,0.0005459968,0.00009958662,0.00055547693,0.000026183048,0.00001496521,0.00021737031],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99894196,0.000088911336,0.00035382513,0.00021732121,0.00014034839,0.00025762143],"domain_scores_gemma":[0.99945277,0.00009245045,0.000098543846,0.00021454024,0.000019554422,0.00012213532],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023677257,0.00012885513,0.00026017957,0.0002650664,0.000060760696,0.000007837611,0.00004832545,0.000112638125,0.00008166236],"category_scores_gemma":[0.00012966903,0.00011727995,0.000097271964,0.0005154014,0.00005131077,0.00013319978,0.000009602529,0.0002009149,0.000012737361],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051079318,0.00019929891,0.98324835,0.000030094523,0.000021346988,0.00000662878,0.000020794485,0.0012325788,0.0009631362,0.000006294954,0.00006839725,0.014152019],"study_design_scores_gemma":[0.0011790929,0.00006658836,0.9957735,0.000044467513,0.000039153732,0.000015923697,0.000002417623,0.00009106602,0.0019671645,0.00007170542,0.0006398087,0.000109093824],"about_ca_topic_score_codex":0.0018689638,"about_ca_topic_score_gemma":0.002968732,"teacher_disagreement_score":0.014042925,"about_ca_system_score_codex":0.00014281843,"about_ca_system_score_gemma":0.00009922922,"threshold_uncertainty_score":0.47825378},"labels":[],"label_agreement":null},{"id":"W2329301770","doi":"10.1155/2003/924325","title":"Epidemiology, Antibiotic Susceptibility and Serotype Distribution of <i>Streptococcus pneumoniae</i> Associated with Invasive Pneumococcal Disease in British Columbia ‐ A Call to Strengthen Public Health Pneumococcal Immunization Programs","year":2003,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Vancouver Hospital and Health Sciences Centre; Canadian Medical Association; Royal Columbian Hospital; University of British Columbia; BC Centre for Disease Control; Canadian Blood Services","funders":"British Columbia Centre for Disease Control","keywords":"Pneumococcal disease; Serotype; Epidemiology; Public health; Immunization; Medicine; Antibiotics; Disease; Streptococcus pneumoniae; Virology; Intensive care medicine; Immunology; Microbiology; Biology; Internal medicine; Antibody; Nursing","score_opus":0.016845666148253703,"score_gpt":0.24903149759586948,"score_spread":0.2321858314476158,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2329301770","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959106,0.00095727894,0.0000477975,0.0018507326,0.0001477536,0.0007753744,0.00028622322,0.00001527681,0.000008953768],"genre_scores_gemma":[0.9986696,0.0002865288,0.0000046168666,0.0007482309,0.000036722744,0.000015115204,0.000212535,0.000017048407,0.000009573783],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9973437,0.0008292684,0.000814997,0.0003253328,0.00009221565,0.0005944489],"domain_scores_gemma":[0.99579203,0.00033262098,0.00039005288,0.00016226276,0.0004061935,0.0029168497],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009290332,0.00017443192,0.000806525,0.00017851606,0.00020387054,0.000035549507,0.00008412554,0.00024114564,0.000040876646],"category_scores_gemma":[0.007512737,0.00018140662,0.00010843036,0.00046829763,0.0008372904,0.00008168208,0.000023742245,0.0004697655,6.177698e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018421462,0.00046731276,0.9946258,0.00013445002,0.00011118863,0.00020717338,0.00007756635,0.000010118435,0.001094024,0.000027045418,0.00006134634,0.0031655491],"study_design_scores_gemma":[0.0017449647,0.0023371635,0.99279106,0.0008488354,0.000098272474,0.0010095256,0.00011584938,0.000009812065,0.0000046545756,0.00005475674,0.000827807,0.0001572994],"about_ca_topic_score_codex":0.016215,"about_ca_topic_score_gemma":0.5014706,"teacher_disagreement_score":0.48525563,"about_ca_system_score_codex":0.0004150602,"about_ca_system_score_gemma":0.005248849,"threshold_uncertainty_score":0.9903361},"labels":[],"label_agreement":null},{"id":"W2331459211","doi":"10.1097/00006454-200210000-00012","title":"Population-based epidemiology of invasive pneumococcal infection in children in nine urban centers in Canada, 1994 through 1998","year":2002,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Impact; University of British Columbia; Dalhousie University","funders":"","keywords":"Epidemiology; Medicine; Bacteremia; Incidence (geometry); Population; Pediatrics; Pneumonia; Meningitis; Vaccination; Pneumococcal infections; Demography; Streptococcus pneumoniae; Immunology; Environmental health; Internal medicine; Biology","score_opus":0.015475316967913528,"score_gpt":0.2497382991263918,"score_spread":0.2342629821584783,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2331459211","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99742925,0.0005072797,0.000026213529,0.0009142494,0.00040010698,0.0005381439,0.000021657872,0.00001881198,0.00014430177],"genre_scores_gemma":[0.9974832,0.000886523,0.0000051618067,0.0010184536,0.00051778374,0.00003716892,0.00001699741,0.000022126686,0.000012598061],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9974393,0.00060999807,0.0009917953,0.00023448793,0.00024742167,0.00047696198],"domain_scores_gemma":[0.9984578,0.0005886661,0.00043218432,0.00023686579,0.00004564042,0.00023884987],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005096899,0.00022877884,0.0005278396,0.0007154332,0.00013922935,0.000006573707,0.00009920276,0.00010569946,0.00012460175],"category_scores_gemma":[0.00092742074,0.00017477362,0.00017850101,0.001086579,0.00005455812,0.00013948418,0.000026050691,0.0009225324,0.000007331328],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005967215,0.00048698112,0.97442335,0.00004725106,0.000028943865,0.00007088342,0.000092609975,0.024430342,0.000021177324,0.000011612733,0.0002550028,0.00007216099],"study_design_scores_gemma":[0.0025150233,0.00015230967,0.9949839,0.000072499824,0.00013604447,0.0002887509,0.000013784081,0.0014388716,0.0000025682189,0.00022037879,0.000022459903,0.00015341658],"about_ca_topic_score_codex":0.508034,"about_ca_topic_score_gemma":0.5221547,"teacher_disagreement_score":0.022991471,"about_ca_system_score_codex":0.0014008877,"about_ca_system_score_gemma":0.0010650135,"threshold_uncertainty_score":0.71270615},"labels":[],"label_agreement":null},{"id":"W2333927792","doi":"10.1097/00006565-200108000-00003","title":"Do published guidelines predict pneumonia in children presenting to an urban ED?","year":2001,"lang":"en","type":"article","venue":"Pediatric Emergency Care","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Tachypnea; Pneumonia; Crackles; Emergency department; Confidence interval; Respiratory distress; Observational study; Pediatrics; Chest radiograph; Predictive value of tests; Emergency medicine; Radiography; Intensive care medicine; Physical examination; Internal medicine; Surgery","score_opus":0.02077038592120419,"score_gpt":0.32191353170411474,"score_spread":0.30114314578291057,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2333927792","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9904034,0.002400291,0.00002811959,0.0009991233,0.0012087623,0.000793776,0.000033672874,0.00022898545,0.0039038707],"genre_scores_gemma":[0.992715,0.0015408759,0.00009319468,0.00027158548,0.00459118,0.00011907112,0.0001021455,0.000051963176,0.0005150073],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9975387,0.00007384252,0.0007812377,0.00059928827,0.0004521594,0.00055478053],"domain_scores_gemma":[0.99822134,0.0000139421845,0.00011509676,0.0006173668,0.00056986185,0.00046238807],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024085601,0.00026771348,0.00033309724,0.00065526547,0.00016820207,0.000038021444,0.00024817575,0.00017151546,0.0007075437],"category_scores_gemma":[0.00061994704,0.00023945449,0.00016297058,0.0015929167,0.000013748699,0.00033248845,0.00010445348,0.0003293331,0.00009030976],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000090380945,0.00013600632,0.97757506,0.000044328604,0.00002113935,0.000029588915,0.0006259518,0.00012545273,0.00045276096,0.0000067292654,0.020135233,0.00083873357],"study_design_scores_gemma":[0.00055047596,0.00018605644,0.98502177,0.000012776089,0.00015310013,0.000062963765,0.00031984216,0.00006626103,0.00001776895,0.000018418776,0.013319603,0.00027098213],"about_ca_topic_score_codex":0.00027357205,"about_ca_topic_score_gemma":0.00010288216,"teacher_disagreement_score":0.0074467147,"about_ca_system_score_codex":0.000094320465,"about_ca_system_score_gemma":0.00018104361,"threshold_uncertainty_score":0.976467},"labels":[],"label_agreement":null},{"id":"W2334497549","doi":"10.1155/2001/657353","title":"Macrolides: A Canadian Infectious Disease Society Position Paper","year":2001,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Queen's University; Kingston General Hospital","funders":"","keywords":"Azithromycin; Clarithromycin; Erythromycin; Medicine; Intensive care medicine; Streptococcus pneumoniae; Antimicrobial; Infectious disease (medical specialty); Respiratory tract infections; Antibiotics; Disease; Immunology; Internal medicine; Biology; Microbiology; Helicobacter pylori; Respiratory system","score_opus":0.004646645139755704,"score_gpt":0.2295709436600806,"score_spread":0.2249242985203249,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2334497549","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9810315,0.0037655942,0.00008159451,0.012483014,0.0009735123,0.00021814521,0.00013402676,0.000029093499,0.0012835204],"genre_scores_gemma":[0.9745033,0.0015427449,0.0000041761477,0.023154724,0.0006293433,0.000008194859,0.000037235306,0.00002194325,0.000098369295],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986251,0.00009172744,0.00040779874,0.00020796608,0.00009845815,0.00056897715],"domain_scores_gemma":[0.99338716,0.00006827172,0.00012626323,0.00014895225,0.00027688238,0.00599246],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00017605853,0.0002044688,0.00038964459,0.00040484656,0.00042043492,0.00004087639,0.00008378375,0.00027896432,0.0014635478],"category_scores_gemma":[0.00046002385,0.00016629555,0.00033515625,0.00025732565,0.00047094168,0.00011500876,0.000012082083,0.00048780182,0.000025786412],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000056592362,0.0001567129,0.9643108,0.00008428553,0.00039954568,0.0047057183,0.00015692694,0.000010438103,0.003120997,0.00030396707,0.015563346,0.011130646],"study_design_scores_gemma":[0.0030137217,0.0009387937,0.36843032,0.00033855066,0.00065325183,0.041194975,0.00011601962,0.000027620523,0.00001028763,0.0006731386,0.5842704,0.00033289363],"about_ca_topic_score_codex":0.050257392,"about_ca_topic_score_gemma":0.2552507,"teacher_disagreement_score":0.5958805,"about_ca_system_score_codex":0.0004678803,"about_ca_system_score_gemma":0.007217529,"threshold_uncertainty_score":0.99944925},"labels":[],"label_agreement":null},{"id":"W2334625577","doi":"","title":"Risk Factors for Macrolide-Resistance in Pneumococcal Bacteremia (PB) in Toronto, Canada","year":2008,"lang":"en","type":"article","venue":"46th Annual Meeting","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Bacteremia; Pneumococcal disease; Medicine; Environmental health; Streptococcus pneumoniae; Microbiology; Antibiotics; Biology","score_opus":0.010944493603709523,"score_gpt":0.2580516437296002,"score_spread":0.24710715012589068,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2334625577","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99310935,0.00022928642,0.000015986916,0.00025162456,0.00029090975,0.00041425653,0.00013010061,0.000035146,0.005523367],"genre_scores_gemma":[0.9988545,0.000057042664,0.00016285302,0.00024030784,0.00016453699,0.000051320963,0.000015571528,0.000024070217,0.00042975682],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985844,0.00007012602,0.00040555614,0.0002826527,0.00018287814,0.00047439095],"domain_scores_gemma":[0.9992266,0.00023173909,0.0001080256,0.00017171439,0.00008374102,0.00017812043],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002051336,0.0001785002,0.00033047338,0.000071325616,0.00017779772,0.0000066119674,0.000079624144,0.00010926944,0.000036024456],"category_scores_gemma":[0.0007287256,0.00015863046,0.00007225177,0.00016731009,0.000041008465,0.00012275737,0.000021900627,0.00028101285,0.0000020124728],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007774816,0.00007194022,0.98989487,0.000065981054,0.00001534245,0.00011699795,0.0014119375,0.000043901957,0.007349969,0.000020873935,0.00069800986,0.00023244022],"study_design_scores_gemma":[0.0011718804,0.000085907224,0.9659718,0.00017190356,0.00001664301,0.000020727224,0.0018687773,0.000036779827,0.0011887666,0.00001423774,0.02925372,0.00019885141],"about_ca_topic_score_codex":0.44794917,"about_ca_topic_score_gemma":0.95864004,"teacher_disagreement_score":0.5106909,"about_ca_system_score_codex":0.0008954201,"about_ca_system_score_gemma":0.0005486381,"threshold_uncertainty_score":0.6468763},"labels":[],"label_agreement":null},{"id":"W2335427543","doi":"10.1155/2006/375645","title":"Discharge Delay in Patients with Community‐Acquired Pneumonia Managed on a Critical Pathway","year":2006,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Ottawa; Dalhousie University","funders":"","keywords":"Community-acquired pneumonia; Pneumonia; Critical pathways; Medicine; Intensive care medicine; Internal medicine; Engineering; Process management","score_opus":0.0045630186197313,"score_gpt":0.21823794308947844,"score_spread":0.21367492446974715,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2335427543","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99725044,0.0002504595,0.00003418377,0.0015846946,0.0002853508,0.00014885586,0.00007908975,0.000010326075,0.00035662754],"genre_scores_gemma":[0.9973097,0.000013244546,0.0000046752357,0.0024711788,0.00012648113,0.0000048878474,0.00003620957,0.000015028675,0.00001859785],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99883664,0.0002395308,0.0003554798,0.00012071725,0.000092767965,0.00035485107],"domain_scores_gemma":[0.99846965,0.00018968928,0.00008553896,0.00012982452,0.00014761547,0.0009776907],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017587376,0.0001538227,0.00036960223,0.0004063948,0.00023547531,0.00001826846,0.0000779657,0.00016899026,0.00012160537],"category_scores_gemma":[0.0003848676,0.00010539889,0.00008541466,0.00016460712,0.00051129004,0.000051499756,0.000012592657,0.0005330602,0.0000060261696],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000107769636,0.0006281329,0.9955731,0.000057603345,0.00005556717,0.00067006686,0.000048427664,0.000004552968,0.0007036849,0.00074137276,0.00038879362,0.0010209236],"study_design_scores_gemma":[0.003948281,0.002773311,0.9822533,0.00043986423,0.000101707104,0.0013031695,0.00005070764,0.000002865424,0.000015466117,0.00027116793,0.008689598,0.00015054464],"about_ca_topic_score_codex":0.0023648657,"about_ca_topic_score_gemma":0.01729113,"teacher_disagreement_score":0.014926265,"about_ca_system_score_codex":0.00015971033,"about_ca_system_score_gemma":0.0008281094,"threshold_uncertainty_score":0.9648857},"labels":[],"label_agreement":null},{"id":"W2336086398","doi":"","title":"Re-establishment of Susceptibility to Respiratory Fluoroquinolones (FQ) in Streptococcus pneumoniae in At-risk Populations in Toronto, Canada","year":2008,"lang":"en","type":"article","venue":"46th Annual Meeting","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Streptococcus pneumoniae; Medicine; Microbiology; Antibiotics; Biology","score_opus":0.030173685442832433,"score_gpt":0.3024500668403969,"score_spread":0.27227638139756444,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2336086398","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99578524,0.00028702107,0.0000013956992,0.00045442104,0.00021622777,0.0008021119,0.00009677632,0.000029814013,0.0023270117],"genre_scores_gemma":[0.9992744,0.000024019972,0.000075971235,0.00036019235,0.00007027087,0.000093247516,0.000011135644,0.000019757374,0.000071046525],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99752384,0.00025934057,0.0009203877,0.00044018833,0.00036317707,0.00049305765],"domain_scores_gemma":[0.9988969,0.00014090844,0.00018420466,0.00042010215,0.00013951767,0.00021838002],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00063287665,0.00020457926,0.00047549346,0.00027379268,0.00013326385,0.0000047213625,0.00011496176,0.00013181978,0.00007114073],"category_scores_gemma":[0.0010543467,0.00020398624,0.00006211575,0.00061930553,0.00006587019,0.00017016762,0.000105173815,0.0003305604,0.0000036027966],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000056510577,0.00022656964,0.9862245,0.00005147824,0.00000651684,0.00012949132,0.0024592371,0.0011824452,0.008384143,0.000009788384,0.00039234397,0.0008769812],"study_design_scores_gemma":[0.0009350772,0.00028645917,0.9900013,0.00025628755,0.000010101129,0.0000053495455,0.0043886406,0.000040093706,0.0012948782,0.000007223189,0.002593376,0.00018121749],"about_ca_topic_score_codex":0.7065734,"about_ca_topic_score_gemma":0.99419165,"teacher_disagreement_score":0.28761822,"about_ca_system_score_codex":0.0023168616,"about_ca_system_score_gemma":0.00070830464,"threshold_uncertainty_score":0.83183175},"labels":[],"label_agreement":null},{"id":"W2336585155","doi":"","title":"Epidemiology of Nosocomial Invasive Pneumococcal Disease in Toronto, Canada, 1995-2007","year":2008,"lang":"en","type":"article","venue":"46th Annual Meeting","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Epidemiology; Pneumococcal disease; Medicine; Disease; Intensive care medicine; Environmental health; Streptococcus pneumoniae; Microbiology; Biology; Antibiotics; Pathology","score_opus":0.021798962457921806,"score_gpt":0.2904493141913851,"score_spread":0.2686503517334633,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2336585155","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9922771,0.00061678444,0.000005582084,0.00090871204,0.00039866706,0.0002707024,0.00006538397,0.000025178502,0.0054319273],"genre_scores_gemma":[0.9979144,0.00006390945,0.000057541827,0.0013402313,0.00039692066,0.000025311518,0.000015318223,0.000014799393,0.00017156624],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984772,0.00019318353,0.0005281625,0.00024458047,0.00015822,0.0003986544],"domain_scores_gemma":[0.99858046,0.00059371366,0.00015022865,0.00019727608,0.00011355554,0.00036476657],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030171408,0.00014762982,0.0004577292,0.000060063347,0.00011727723,5.2650216e-7,0.00007939518,0.00009562536,0.00009341066],"category_scores_gemma":[0.0027075612,0.00013005458,0.00009379052,0.0001158112,0.00013644042,0.000076296164,0.000045662113,0.00022908786,0.000006202145],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000093782255,0.00010539022,0.99480927,0.00006991371,0.000021259344,0.0003220003,0.0003250488,0.00014780425,0.002875812,0.000068819776,0.0010127352,0.00014817428],"study_design_scores_gemma":[0.0007538213,0.0001523639,0.9929638,0.0001547678,0.00002869685,0.00006419208,0.00051198766,0.000061118444,0.00038911292,0.00001532348,0.00477419,0.00013060571],"about_ca_topic_score_codex":0.47418064,"about_ca_topic_score_gemma":0.58196956,"teacher_disagreement_score":0.1077889,"about_ca_system_score_codex":0.00041464233,"about_ca_system_score_gemma":0.0014061056,"threshold_uncertainty_score":0.5303472},"labels":[],"label_agreement":null},{"id":"W2336769561","doi":"10.1136/thoraxjnl-2015-207770.350","title":"P214 Arrhythmias in pneumonia: a review of incidence, outcomes and management","year":2015,"lang":"en","type":"review","venue":"Thorax","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Incidence (geometry); MEDLINE; Retrospective cohort study; Pediatrics; Systematic review; Intensive care medicine; Emergency medicine; Internal medicine","score_opus":0.06743706448736621,"score_gpt":0.4049327562476132,"score_spread":0.337495691760247,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2336769561","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000019905794,0.9882516,0.0000024393364,0.00030563414,0.00014979823,0.0016258387,0.000015094624,0.000030475747,0.009599213],"genre_scores_gemma":[0.0000052208197,0.9978452,0.00008003502,0.0004726721,0.00005611148,0.00020087665,0.000019062678,0.000031993517,0.0012888808],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981929,0.00016884638,0.0008205972,0.0003094898,0.00030214502,0.00020601419],"domain_scores_gemma":[0.998881,0.00006684437,0.0003143379,0.0005107464,0.00007954514,0.00014754474],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00075455057,0.00031853173,0.0025791437,0.00040668563,0.000022580673,0.000006407979,0.00010339412,0.0001837084,0.000033241653],"category_scores_gemma":[0.00010889951,0.00021294129,0.00029343268,0.00058543606,0.00008207469,0.000041698222,0.00013369918,0.0003661,0.00007243853],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000017130938,0.000052720672,0.00043670487,0.3094097,0.00013923222,0.00029456633,0.000013054916,2.5713716e-8,3.223199e-7,0.00011184284,0.00083844987,0.6887016],"study_design_scores_gemma":[0.00017891443,0.00006680652,0.00067069166,0.20100297,0.001254277,0.00033210247,0.0000054380957,2.631601e-7,6.7479895e-8,0.000023558494,0.79632366,0.00014124463],"about_ca_topic_score_codex":0.0000097492075,"about_ca_topic_score_gemma":0.000008508783,"teacher_disagreement_score":0.7954852,"about_ca_system_score_codex":0.00012515941,"about_ca_system_score_gemma":0.00023974202,"threshold_uncertainty_score":0.8683494},"labels":[],"label_agreement":null},{"id":"W2337376853","doi":"10.1093/cid/ciw175","title":"Influence of Childhood Pneumococcal Conjugate Vaccines on Invasive Pneumococcal Disease in Adults With Underlying Comorbidities in Calgary, Alberta (2000–2013)","year":2016,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary; Alberta Children's Hospital","funders":"Pfizer Canada; Alberta Children's Hospital Research Institute","keywords":"Medicine; Pneumococcal disease; Pneumococcal conjugate vaccine; Pneumococcal infections; Streptococcus pneumoniae; Pediatrics; Disease; Immunology; Internal medicine; Microbiology; Antibiotics; Biology","score_opus":0.021561456237037792,"score_gpt":0.3086452041062869,"score_spread":0.28708374786924906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2337376853","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99647444,0.00012124555,0.0000062766926,0.0014799199,0.00018368721,0.0011334514,0.00006576588,0.00010943952,0.0004257818],"genre_scores_gemma":[0.9978706,0.00067158433,0.0000011041047,0.0009198402,0.00014080381,0.00023174717,0.000021565307,0.000052864063,0.00008984627],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99688566,0.00034692138,0.0011786947,0.00072829466,0.0003192136,0.0005412287],"domain_scores_gemma":[0.9952959,0.0028137006,0.0003211122,0.00061644893,0.00020768477,0.0007451882],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00020198911,0.00042201093,0.00094224757,0.00043502462,0.0001057156,0.000019591002,0.00017354712,0.00020784304,0.00008515809],"category_scores_gemma":[0.002857941,0.00027187893,0.0002848182,0.00052352657,0.000726452,0.00028445158,0.00008835472,0.00047257412,0.00008104213],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008269991,0.0035959247,0.9920988,0.00024404109,0.000096867385,0.0002768561,0.00015736638,0.00069685397,0.0008087981,0.0001917745,0.000027344266,0.0009783445],"study_design_scores_gemma":[0.008227578,0.0025038854,0.98400754,0.0038480763,0.00015956537,0.0000186082,0.00006121087,0.000036236455,0.00008902729,0.000514895,0.00016630907,0.00036709046],"about_ca_topic_score_codex":0.0007503594,"about_ca_topic_score_gemma":0.005253514,"teacher_disagreement_score":0.008091313,"about_ca_system_score_codex":0.00018580341,"about_ca_system_score_gemma":0.0010368275,"threshold_uncertainty_score":0.99997336},"labels":[],"label_agreement":null},{"id":"W2337499666","doi":"10.1016/j.vaccine.2016.03.058","title":"Invasive Streptococcus pneumoniae in Canada, 2011–2014: Characterization of new candidate 15-valent pneumococcal conjugate vaccine serotypes 22F and 33F","year":2016,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Diagnostic Services Manitoba; Health Sciences Centre; University of Manitoba","funders":"Public Health Agency of Canada; Research Manitoba; GlaxoSmithKline","keywords":"Streptococcus pneumoniae; Pneumococcal conjugate vaccine; Conjugate vaccine; Microbiology; Serotype; Virology; Conjugate; Pneumococcal infections; Medicine; Biology; Antibiotics","score_opus":0.008439970557900136,"score_gpt":0.22571260212178204,"score_spread":0.2172726315638819,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2337499666","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99161667,0.00012363319,0.00003783436,0.006805613,0.0002637614,0.00091438985,0.000100739846,0.000034764438,0.00010257116],"genre_scores_gemma":[0.9973727,0.0009345996,0.00000534321,0.0004752738,0.0001671538,0.000050928127,0.0000395256,0.00003243872,0.0009220755],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982856,0.000085408654,0.0006642444,0.0003890402,0.00021667963,0.00035901854],"domain_scores_gemma":[0.99875575,0.0001261105,0.00027111892,0.00036850403,0.00014812966,0.0003303541],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016436804,0.0002740342,0.00070850964,0.00026221675,0.00005631504,0.000009772966,0.000095793774,0.00010683101,0.00059297704],"category_scores_gemma":[0.00010913071,0.0001807291,0.00006784,0.00018454305,0.000020475321,0.00016654184,0.00007356774,0.00017102652,0.000047559428],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024396613,0.000042946955,0.51474553,0.00006940198,0.000053112002,0.000034001514,0.00006196233,0.0000018415823,0.482504,0.000033384775,0.0004689029,0.0017409038],"study_design_scores_gemma":[0.010755505,0.00027072712,0.93043685,0.0003091228,0.00010248955,0.00005043199,0.000030515663,0.000027948356,0.054688454,0.00005101536,0.0030713847,0.00020557828],"about_ca_topic_score_codex":0.15393467,"about_ca_topic_score_gemma":0.53964424,"teacher_disagreement_score":0.42781556,"about_ca_system_score_codex":0.00025080657,"about_ca_system_score_gemma":0.0013412444,"threshold_uncertainty_score":0.85169935},"labels":[],"label_agreement":null},{"id":"W2338284284","doi":"","title":"Emergence of Serotype 19A Multi-Drug Resistant S. pneumoniae (MDR SPN) in Canada","year":2008,"lang":"en","type":"article","venue":"46th Annual Meeting","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Serotype; Virology; Medicine; Drug resistance; Microbiology; Biology","score_opus":0.018994545339459407,"score_gpt":0.24871984080475093,"score_spread":0.22972529546529152,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2338284284","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99561816,0.00026265217,0.0000071133495,0.0004762933,0.0003102447,0.00021099852,0.00003969449,0.000030080193,0.0030447424],"genre_scores_gemma":[0.99878013,0.000077495504,0.00022614244,0.00031711554,0.00007612954,0.000012920822,0.0000045406155,0.00001903056,0.000486476],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99857366,0.0000723744,0.00047185068,0.00023833422,0.00029684586,0.00034691452],"domain_scores_gemma":[0.99922645,0.000070285976,0.00013561865,0.0002301801,0.00016415144,0.00017333718],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020175094,0.00014824813,0.00031773013,0.000121440164,0.00014371054,0.0000020883967,0.000096216245,0.00005038097,0.00006371617],"category_scores_gemma":[0.00032768727,0.00013207589,0.000060130133,0.00041871233,0.00006326217,0.00007020001,0.000041601463,0.00026320718,0.00001092057],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000591967,0.00013783506,0.91327196,0.00013976597,0.000027910797,0.00047245764,0.002049267,0.00025677486,0.080866195,0.000014703803,0.002185043,0.00051885634],"study_design_scores_gemma":[0.001503036,0.00021559877,0.96082455,0.0005901291,0.00004606531,0.00016945238,0.007890674,0.0006230692,0.013878981,0.000006394296,0.013876523,0.0003755124],"about_ca_topic_score_codex":0.51504123,"about_ca_topic_score_gemma":0.7521517,"teacher_disagreement_score":0.23711051,"about_ca_system_score_codex":0.000117222015,"about_ca_system_score_gemma":0.0011738567,"threshold_uncertainty_score":0.53858984},"labels":[],"label_agreement":null},{"id":"W2338988165","doi":"","title":"Activity of Cethromycin and Comparators versus Defined Phenotypes of Streptococcus pneumoniae (SPN) Obtained from Hospitals Across Canada : Results from 2007 CANWARD Study","year":2008,"lang":"en","type":"article","venue":"46th Annual Meeting","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Streptococcus pneumoniae; Phenotype; Medicine; Microbiology; Biology; Statistics; Mathematics; Genetics; Gene; Antibiotics","score_opus":0.022615819397248663,"score_gpt":0.2873035507014681,"score_spread":0.26468773130421946,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2338988165","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953201,0.00016934781,0.0000035844648,0.00015985423,0.00049991556,0.00061114656,0.0026636922,0.000047880723,0.00052447885],"genre_scores_gemma":[0.99959576,0.000016264707,0.00006467199,0.00004203647,0.00016757016,0.000014557857,0.000046739846,0.000024931993,0.000027482043],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978135,0.0001781409,0.0006658104,0.000474188,0.00046885497,0.00039947667],"domain_scores_gemma":[0.9976475,0.00088031363,0.00046175267,0.00042511415,0.00032216497,0.00026313151],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00027459188,0.0002816873,0.0008099956,0.000052459836,0.0002845859,0.000008841274,0.00012305556,0.00012046076,0.000016174934],"category_scores_gemma":[0.00088926865,0.00025162287,0.00008160469,0.00028279566,0.00020854876,0.000111825284,0.000106336556,0.00030028325,0.000002047418],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00116125,0.00046245594,0.94843173,0.00003734549,0.00042720034,0.00011580479,0.008791964,0.0001368159,0.038865846,0.0000013188948,0.0005022379,0.0010660368],"study_design_scores_gemma":[0.0062741367,0.0010932246,0.9637964,0.00013430258,0.00016739138,0.000002652718,0.01019479,0.00006203495,0.017485615,0.000003233371,0.00054597465,0.0002402954],"about_ca_topic_score_codex":0.6521185,"about_ca_topic_score_gemma":0.38512713,"teacher_disagreement_score":0.26699138,"about_ca_system_score_codex":0.00012685612,"about_ca_system_score_gemma":0.00060137163,"threshold_uncertainty_score":0.9999936},"labels":[],"label_agreement":null},{"id":"W2339800135","doi":"10.1093/ofid/ofv133.989","title":"Evaluating the Impact of an Antimicrobial Stewardship Program on the Length of Stay of Immune-Competent Adult Patients Admitted to a Hospital Ward With a Diagnosis of Community-Acquired Pneumonia: A Pragmatic Clinical Trial","year":2015,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Antimicrobial stewardship; Pneumonia; Intensive care medicine; Antimicrobial; Pathogenic organism; Immune status; Community-acquired pneumonia; Community hospital; Pediatrics; Immune system; Antibiotics; Internal medicine; Immunology; Nursing; Microbiology; Antibiotic resistance","score_opus":0.07966400803300627,"score_gpt":0.42624662540313,"score_spread":0.34658261737012375,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2339800135","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9913959,0.000011205306,0.000002362298,0.00039818956,0.00017654552,0.0074666115,0.00031441677,0.000036727233,0.00019802227],"genre_scores_gemma":[0.998865,0.000007138411,0.00003403281,0.00016542614,0.000033915832,0.00079173775,0.00006130939,0.000038078208,0.0000033596536],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9958595,0.0018114863,0.0012252349,0.00021184515,0.0005850532,0.00030688386],"domain_scores_gemma":[0.9953164,0.000989832,0.001153672,0.0010213817,0.0012397565,0.00027898554],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013410859,0.00028152272,0.0009858673,0.0001436189,0.00023708623,0.000042526946,0.0005199665,0.0000946498,0.000019579677],"category_scores_gemma":[0.0038818726,0.00014269777,0.00051544694,0.0005706986,0.00046101652,0.00017193524,0.00030362784,0.00029850556,0.0000021875348],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.017306838,0.037470162,0.9324324,0.00016996861,0.001246789,0.000002020666,0.002112512,0.0004302034,0.0007368405,0.000033271477,0.0001751259,0.007883874],"study_design_scores_gemma":[0.03432013,0.17516874,0.7852241,0.0008160781,0.00091194245,0.0000059743516,0.0018306916,0.00020283388,0.0012545824,0.000056354344,0.000011888336,0.00019669501],"about_ca_topic_score_codex":0.0018534694,"about_ca_topic_score_gemma":0.00017836428,"teacher_disagreement_score":0.1472083,"about_ca_system_score_codex":0.00010396881,"about_ca_system_score_gemma":0.0008633827,"threshold_uncertainty_score":0.58190465},"labels":[],"label_agreement":null},{"id":"W2340028381","doi":"10.1056/id200011020000005","title":"Community-Acquired Pneumonia","year":2000,"lang":"en","type":"article","venue":"Journal watch","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Community-acquired pneumonia; Medicine; Pneumonia; Intensive care medicine; Respiratory tract infections; Population; Family medicine; Environmental health; Internal medicine; Respiratory system","score_opus":0.02208455948146532,"score_gpt":0.29317884488130924,"score_spread":0.2710942853998439,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2340028381","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.945011,0.000044334807,0.000017423943,0.03510215,0.0002291275,0.000072087096,0.0000016644562,0.000058048907,0.019464169],"genre_scores_gemma":[0.9717251,0.00049460883,0.00007293486,0.0031101117,0.00048444932,0.0000034611112,0.000002391832,0.00001935879,0.024087587],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991499,0.00014663338,0.00023786312,0.00006084058,0.00018875547,0.00021598967],"domain_scores_gemma":[0.999368,0.000030461708,0.00004660841,0.00023482986,0.00007503884,0.0002450681],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00029016624,0.000099095436,0.00019034055,0.000052581898,0.0006813933,0.000044068405,0.00009482624,0.00007843564,0.0025805887],"category_scores_gemma":[0.000030517533,0.00007216111,0.00014008915,0.00016501891,0.000053614418,0.00010107529,0.000012650357,0.00066753716,0.000622463],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024136422,0.0016978993,0.06315701,0.000078853634,0.00036208032,0.0010800933,0.0034122623,0.0001037807,0.7197755,0.00004661293,0.08572183,0.1243227],"study_design_scores_gemma":[0.0011010699,0.00051897083,0.08711892,0.00008697173,0.00008558242,0.0087441215,0.00018957362,0.000031086678,0.001465103,0.00040645825,0.9001236,0.0001285158],"about_ca_topic_score_codex":0.000019442856,"about_ca_topic_score_gemma":0.000007960136,"teacher_disagreement_score":0.8144018,"about_ca_system_score_codex":0.00009132109,"about_ca_system_score_gemma":0.00007339202,"threshold_uncertainty_score":0.9983312},"labels":[],"label_agreement":null},{"id":"W2340451103","doi":"","title":"Vaccine Escape of Streptococcus pneumoniae (SPN) is Coupled to Amoxicillin Resistance (AMOXR) in Canada","year":2008,"lang":"en","type":"article","venue":"46th Annual Meeting","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Streptococcus pneumoniae; Amoxicillin; Microbiology; Medicine; Pneumococcal infections; Virology; Biology; Antibiotics","score_opus":0.010177083060252817,"score_gpt":0.2378908698718388,"score_spread":0.227713786811586,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2340451103","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941649,0.0001958033,0.000015031817,0.002156893,0.00018233468,0.0005037365,0.000078360594,0.000039136128,0.002663834],"genre_scores_gemma":[0.997076,0.00004414103,0.00011835109,0.0017055518,0.00012457023,0.00004235193,0.0000061849983,0.000028300788,0.0008545659],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9980761,0.00005755222,0.00064194,0.0003553217,0.00040773474,0.00046134484],"domain_scores_gemma":[0.9987821,0.00013208103,0.00016752299,0.00035353005,0.00026667916,0.00029807704],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021538563,0.00021148937,0.00050338684,0.00020278667,0.00014398493,0.0000043309883,0.00012792529,0.000081421626,0.00008758421],"category_scores_gemma":[0.00038351121,0.00019404865,0.000076549724,0.00070870906,0.000030387995,0.00007232635,0.000049401002,0.00028733246,0.000017671702],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012847588,0.00015095412,0.9022104,0.00015518487,0.0000559631,0.00040048134,0.001857719,0.0004707151,0.087853424,0.000017188662,0.0061906264,0.00050885015],"study_design_scores_gemma":[0.0022769128,0.00038181778,0.9295984,0.0008277132,0.000053332205,0.00005014107,0.0022966054,0.00040782394,0.02130709,0.000012198287,0.04234085,0.00044711193],"about_ca_topic_score_codex":0.19481684,"about_ca_topic_score_gemma":0.71497697,"teacher_disagreement_score":0.5201601,"about_ca_system_score_codex":0.0003367192,"about_ca_system_score_gemma":0.0011783396,"threshold_uncertainty_score":0.81054497},"labels":[],"label_agreement":null},{"id":"W2340677892","doi":"10.1155/2016/5381871","title":"Genomic Analysis of a Serotype 5<i>Streptococcus pneumoniae</i>Outbreak in British Columbia, Canada, 2005–2009","year":2016,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta; St. Paul's Hospital; Public Health Agency of Canada; University of British Columbia; BC Centre for Disease Control; BC Cancer Agency; Providence Health Care; Simon Fraser University; Dalhousie University","funders":"British Columbia Centre for Disease Control; Canada's Michael Smith Genome Sciences Centre; Genome Canada; McGill University","keywords":"Outbreak; Multilocus sequence typing; Serotype; Whole genome sequencing; Biology; Streptococcus pneumoniae; Genome; Virology; Strain (injury); Genetics; Genotype; Gene; Bacteria","score_opus":0.0037026264844925707,"score_gpt":0.20532106561766275,"score_spread":0.20161843913317018,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2340677892","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99628866,0.0013858409,0.000013962174,0.0011989777,0.0003261167,0.00014317987,0.0005341597,0.0000047430303,0.00010436777],"genre_scores_gemma":[0.99789536,0.00040453902,0.0000011862479,0.0014408679,0.00009928237,0.000005059993,0.0000107116075,0.000010708386,0.00013228119],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99864435,0.00009760716,0.0005913515,0.00017967582,0.000090198926,0.00039680593],"domain_scores_gemma":[0.9978602,0.00012623981,0.00022430046,0.00012976179,0.00018687207,0.0014726599],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001784912,0.00010578221,0.00066084706,0.0004185247,0.00008074042,0.000018430406,0.00009608434,0.00018112018,0.00111657],"category_scores_gemma":[0.00044919638,0.000102220634,0.00019494408,0.00038733482,0.00035537363,0.000036685025,0.00001580084,0.00021735317,0.0000014847035],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000072750886,0.00006636616,0.9796916,0.000024287117,0.0005894137,0.00097377115,0.000014662427,0.000003864671,0.00984678,0.0000034767495,0.0023024704,0.006476029],"study_design_scores_gemma":[0.0014316441,0.00029806443,0.97023964,0.0002439595,0.000728169,0.0020240475,0.00003591445,0.0000032022638,0.000012289463,0.000019504358,0.02485053,0.00011304109],"about_ca_topic_score_codex":0.8480363,"about_ca_topic_score_gemma":0.99899304,"teacher_disagreement_score":0.15095675,"about_ca_system_score_codex":0.00041792684,"about_ca_system_score_gemma":0.007887286,"threshold_uncertainty_score":0.99979657},"labels":[],"label_agreement":null},{"id":"W2340939780","doi":"10.1155/2004/659187","title":"Symptom Resolution in Patients with <i>Mycoplasma pneumoniae</i> Pneumonia","year":2004,"lang":"en","type":"article","venue":"Canadian Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Bayer (Canada); University of Alberta","funders":"","keywords":"Medicine; Mycoplasma pneumoniae; Pneumonia; Internal medicine; Sputum; Chest pain; Tuberculosis; Pathology","score_opus":0.00860366040765538,"score_gpt":0.21821000162436768,"score_spread":0.2096063412167123,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2340939780","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99427205,0.00012377469,0.0000306301,0.0016697726,0.00039871913,0.00038890776,0.000022782455,0.000043504922,0.0030498793],"genre_scores_gemma":[0.9940523,0.0000119997885,0.000053247524,0.005471571,0.00024604247,0.000017109089,0.00000735923,0.00005387944,0.00008649605],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.997841,0.0000881176,0.00049971923,0.0003229601,0.0004546703,0.00079353503],"domain_scores_gemma":[0.99768394,0.00001966949,0.00015814372,0.00034941031,0.00029748306,0.001491369],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003083078,0.0002794053,0.00035106073,0.0010489046,0.0004766065,0.000088295936,0.00015527534,0.00022304065,0.00008556433],"category_scores_gemma":[0.00008742098,0.00023313765,0.00011531516,0.0006771623,0.00013946684,0.0002963209,0.000014529269,0.0009942267,0.00014543919],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000843005,0.0001694651,0.99412185,0.000018410145,0.00005237975,0.0009877299,0.00013533668,0.0008228486,0.0019981274,0.00020056062,0.00037239768,0.0010365975],"study_design_scores_gemma":[0.0065517975,0.0013327838,0.8913501,0.00036480356,0.00006431491,0.0013972012,0.00006171974,0.0000053753965,0.00009934962,0.00011450574,0.09830933,0.00034872926],"about_ca_topic_score_codex":0.0015380316,"about_ca_topic_score_gemma":0.05033524,"teacher_disagreement_score":0.10277176,"about_ca_system_score_codex":0.0020756566,"about_ca_system_score_gemma":0.003681312,"threshold_uncertainty_score":0.9669937},"labels":[],"label_agreement":null},{"id":"W2341723007","doi":"","title":"Impact of 7-Valent Pneumococcal Conjugate Vaccine (PCV7) on Invasive Pneumococcal Disease (IPD) in Children in Toronto and Peel Regions, Ontario, Canada","year":2008,"lang":"en","type":"article","venue":"46th Annual Meeting","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Pneumococcal disease; Pneumococcal conjugate vaccine; Medicine; Environmental health; Streptococcus pneumoniae; Biology; Microbiology; Antibiotics","score_opus":0.009313529248788279,"score_gpt":0.2572542351035827,"score_spread":0.2479407058547944,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2341723007","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99713033,0.00028258227,3.905589e-7,0.00053468125,0.00008923225,0.0006941428,0.000084001236,0.000023591501,0.0011610561],"genre_scores_gemma":[0.99915916,0.00016595307,0.000008397409,0.00032177646,0.000106232925,0.000038257156,0.000036700978,0.000025630547,0.00013787918],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99811333,0.00013081166,0.00056633074,0.00041316895,0.0003019658,0.00047438903],"domain_scores_gemma":[0.9987788,0.00015525325,0.00016298417,0.000289918,0.000106219435,0.0005068242],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019720463,0.00028748586,0.00053690793,0.0001603231,0.00013427687,0.000007128157,0.00009261343,0.00010103155,0.000060673312],"category_scores_gemma":[0.0004187261,0.00024063626,0.00011821339,0.00018525208,0.00006842473,0.00015080793,0.00006583556,0.00041604287,0.0000020849136],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003394669,0.00033158623,0.9925522,0.000040799252,0.000055554654,0.00035173274,0.0010187074,0.00018213662,0.0046581016,0.000019000605,0.00033590262,0.00011480937],"study_design_scores_gemma":[0.0023005563,0.00067288,0.9953216,0.00043072013,0.000042112744,0.00020488317,0.0003932246,0.000022981569,0.00020187932,0.000009358681,0.0001768772,0.00022294461],"about_ca_topic_score_codex":0.9064215,"about_ca_topic_score_gemma":0.9687556,"teacher_disagreement_score":0.06233413,"about_ca_system_score_codex":0.0016065239,"about_ca_system_score_gemma":0.0021904649,"threshold_uncertainty_score":0.98128617},"labels":[],"label_agreement":null},{"id":"W2343275902","doi":"10.1183/23120541.00001-2016","title":"Antibiotic preferences for childhood pneumonia vary by physician type and European region","year":2016,"lang":"en","type":"article","venue":"ERJ Open Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Infection and Immunity; European Commission; University of Southampton; Seventh Framework Programme; University of Cyprus; Universität Basel","keywords":"Medicine; Primary care; Medical prescription; Pneumonia; Family medicine; Antibiotics; Ambulatory; Intensive care medicine; Nursing; Surgery; Internal medicine","score_opus":0.12917392820386725,"score_gpt":0.4024379329530911,"score_spread":0.27326400474922385,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2343275902","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9114952,0.00021842387,0.000044833123,0.0080156885,0.00012992011,0.0017580242,0.000023126006,0.000047991107,0.07826677],"genre_scores_gemma":[0.99086696,0.00024115997,0.00003199032,0.00038741087,0.00018169994,0.000018865821,0.00000974135,0.00002807733,0.008234115],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987167,0.0002528744,0.00013559195,0.00033354748,0.00022476497,0.0003365232],"domain_scores_gemma":[0.9990521,0.00018561332,0.00003269581,0.0003066814,0.00025053788,0.00017235665],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006893647,0.00009829021,0.00017745794,0.00010447425,0.00032257542,0.00009723877,0.0002379843,0.000049293812,0.000027878164],"category_scores_gemma":[0.00026119503,0.000057947767,0.000028630382,0.0002938264,0.00018301888,0.0001642604,0.000217387,0.00018920467,0.00017455335],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023202995,0.0006742152,0.051074285,0.00012166159,0.00012695826,0.000048125712,0.00031694237,8.880448e-8,0.67139703,0.00070141326,0.104452886,0.17085437],"study_design_scores_gemma":[0.0032657157,0.0036306686,0.6342579,0.0007974948,0.000047869195,0.00008090437,0.00021086486,0.00000897617,0.014870686,0.0010106731,0.34153163,0.00028659246],"about_ca_topic_score_codex":0.000031838295,"about_ca_topic_score_gemma":0.000010393862,"teacher_disagreement_score":0.6565263,"about_ca_system_score_codex":0.00003115775,"about_ca_system_score_gemma":0.00015113245,"threshold_uncertainty_score":0.24810219},"labels":[],"label_agreement":null},{"id":"W2343657097","doi":"10.1016/j.cger.2016.02.012","title":"Bacterial Pneumonia in Older Adults","year":2016,"lang":"en","type":"review","venue":"Clinics in Geriatric Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Medicine; Pneumonia; Confusion; Intensive care medicine; Presentation (obstetrics); Population; MEDLINE; Pediatrics; Surgery; Internal medicine; Environmental health","score_opus":0.04102864608941185,"score_gpt":0.3882073472819308,"score_spread":0.3471787011925189,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2343657097","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0012443352,0.9865238,0.0000076325305,0.00067859225,0.0063772076,0.0023233742,0.000036292786,0.000086137945,0.0027226403],"genre_scores_gemma":[0.00016336018,0.9927283,0.000020426998,0.00033931652,0.005055777,0.00030128818,0.00013124873,0.00011765982,0.00114263],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9945179,0.00041321976,0.0029710748,0.0009712322,0.00044623966,0.0006803078],"domain_scores_gemma":[0.9963989,0.0012958369,0.00081430946,0.001009807,0.00011073506,0.00037039578],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0014882807,0.00072230404,0.0042885505,0.0017666721,0.0000504874,0.000009907722,0.00033532793,0.0012299857,0.0012794586],"category_scores_gemma":[0.0018742639,0.00043857505,0.00052375963,0.0016450329,0.00023348648,0.00006660882,0.0001245059,0.0014823191,0.0004712005],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000709174,0.00037134957,0.00093520863,0.01263174,0.00007635809,0.0006168914,0.00013510905,3.82462e-8,0.000006907159,0.000039845843,0.0010652373,0.9840504],"study_design_scores_gemma":[0.005597688,0.0004826515,0.0029704964,0.07824687,0.0005544893,0.00027179747,0.000023433502,0.0000017677039,8.827463e-8,0.00003828041,0.91141635,0.00039611306],"about_ca_topic_score_codex":0.000025591307,"about_ca_topic_score_gemma":0.000031140888,"teacher_disagreement_score":0.98365426,"about_ca_system_score_codex":0.00044295227,"about_ca_system_score_gemma":0.0011105998,"threshold_uncertainty_score":0.9998066},"labels":[],"label_agreement":null},{"id":"W2343712855","doi":"10.1093/infdis/jiw160","title":"Antigen-Independent Restriction of Pneumococcal Density by Mucosal Adjuvant Cholera Toxin Subunit B","year":2016,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pediatric Oncology Group","funders":"","keywords":"Pneumolysin; Cholera toxin; Streptococcus pneumoniae; Immunology; Biology; Adjuvant; Immune system; Microbiology; Innate immune system","score_opus":0.008179297575631619,"score_gpt":0.2479661954547627,"score_spread":0.23978689787913107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2343712855","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963734,0.0004899837,0.0007428724,0.0013878412,0.000482267,0.00018453643,0.000034290988,0.000038112717,0.00026668893],"genre_scores_gemma":[0.9974334,0.0018968541,0.0000014757334,0.00023963347,0.00031322936,0.00000257759,0.0000016768836,0.000018044451,0.000093056],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985329,0.00020264076,0.00052560156,0.00010417737,0.00042697892,0.0002076955],"domain_scores_gemma":[0.9983288,0.0002297093,0.000494383,0.0002583982,0.0004285591,0.0002601327],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032621453,0.00015802262,0.00036623658,0.0002105657,0.00017674456,0.000012418759,0.00011761467,0.00008370103,0.00011279912],"category_scores_gemma":[0.0003317592,0.00007941544,0.00026198194,0.00024118205,0.00017007317,0.00017503777,0.000036682555,0.00025242893,0.000021564221],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023367003,0.0006586355,0.46109608,0.00002152214,0.00017647809,0.000037846945,0.00007651158,0.000014949025,0.5342251,0.000020646561,0.00133523,0.0021033539],"study_design_scores_gemma":[0.002510399,0.0014341295,0.9594561,0.00020887764,0.0004383039,0.0011154405,0.000081965234,0.0000053240897,0.030490836,0.00018191496,0.0039525023,0.0001242112],"about_ca_topic_score_codex":0.00004072702,"about_ca_topic_score_gemma":0.000012622728,"teacher_disagreement_score":0.50373423,"about_ca_system_score_codex":0.00016030268,"about_ca_system_score_gemma":0.0002684564,"threshold_uncertainty_score":0.32384676},"labels":[],"label_agreement":null},{"id":"W2345331385","doi":"10.1016/j.chest.2016.04.020","title":"Current Smoking and Reduced Mortality in Bacteremic Pneumococcal Pneumonia","year":2016,"lang":"en","type":"article","venue":"CHEST Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Dalhousie University; Provincial Laboratory of Public Health; Alliance for Canadian Health Outcomes Research in Diabetes","funders":"","keywords":"Medicine; Pneumococcal pneumonia; Pneumonia; Case fatality rate; Bacteremia; Internal medicine; Serotype; Population; Prospective cohort study; Logistic regression; Epidemiology; Streptococcus pneumoniae; Immunology; Antibiotics; Environmental health; Microbiology","score_opus":0.04084259504814726,"score_gpt":0.3241182863857251,"score_spread":0.28327569133757785,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2345331385","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966328,0.0002779542,0.000053010983,0.0019212777,0.0005655525,0.000099570294,0.000002372391,0.000025130683,0.0004223362],"genre_scores_gemma":[0.9987284,0.00066130987,0.000011052579,0.00008414029,0.00043975282,0.0000058486758,5.604337e-7,0.0000139933745,0.00005493711],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989906,0.000060016657,0.00033103643,0.00017758786,0.00016789182,0.00027285548],"domain_scores_gemma":[0.9993634,0.00004878292,0.000102340375,0.00014932289,0.000056475143,0.00027963798],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033918492,0.00013004964,0.00022900329,0.0001701841,0.000108950975,0.000032165626,0.00005735137,0.00008220812,0.00009650536],"category_scores_gemma":[0.00013003215,0.00007953248,0.00007772751,0.00012366632,0.000093711875,0.0001455898,0.000030765033,0.00049472967,0.000014563076],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008043362,0.000059710597,0.5030809,0.000025369985,0.000016703741,0.000060504055,0.0000596711,1.3335163e-7,0.47871822,0.000010562337,0.000013564802,0.017946577],"study_design_scores_gemma":[0.0011467341,0.000087451146,0.98004246,0.00049334555,0.000051477113,0.001713677,0.000023485214,0.000004607743,0.0028033538,0.00019414558,0.013331529,0.000107747495],"about_ca_topic_score_codex":0.0000028222266,"about_ca_topic_score_gemma":0.000008231603,"teacher_disagreement_score":0.47696152,"about_ca_system_score_codex":0.0001663144,"about_ca_system_score_gemma":0.00015850856,"threshold_uncertainty_score":0.32432404},"labels":[],"label_agreement":null},{"id":"W2346044101","doi":"10.7326/l15-0583","title":"Corticosteroid Therapy for Patients Hospitalized With Community-Acquired Pneumonia","year":2016,"lang":"en","type":"letter","venue":"Annals of Internal Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumonia; Subgroup analysis; Gerontology; Library science; Humanities; Family medicine; Internal medicine; Philosophy","score_opus":0.052787475987108076,"score_gpt":0.33833554272746275,"score_spread":0.28554806674035466,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2346044101","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.35045388,0.00021947554,0.00019344626,0.6443217,0.0010284868,0.0015668052,0.00021008524,0.00007743771,0.0019287022],"genre_scores_gemma":[0.1707941,0.00065367087,0.000023493683,0.82159495,0.0034519883,0.0002043355,0.00035682955,0.00013684318,0.002783795],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9974688,0.00019880092,0.0008640594,0.00032056338,0.00064380956,0.00050395704],"domain_scores_gemma":[0.9964674,0.0004286478,0.0007810825,0.00079683226,0.0013484791,0.00017752923],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003214422,0.00049802504,0.0012844773,0.0003857574,0.00013078746,0.000010624833,0.00037009592,0.00045289684,0.00016504462],"category_scores_gemma":[0.00029748157,0.00026416685,0.00030841713,0.00013853642,0.00061309704,0.000084842206,0.00005237869,0.00091771816,0.000015522877],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024442328,0.0005693643,0.03933631,0.0009525554,0.0017609622,0.0001636283,0.00051637774,6.467105e-8,0.016176159,0.0000055949945,0.9263486,0.011726122],"study_design_scores_gemma":[0.008933269,0.028051062,0.037166707,0.007185719,0.00024363879,0.00009279896,0.00002724488,0.0000013355171,0.0020096994,0.00013091016,0.91582835,0.00032923877],"about_ca_topic_score_codex":0.00014396232,"about_ca_topic_score_gemma":0.0000030883596,"teacher_disagreement_score":0.17965978,"about_ca_system_score_codex":0.000041490373,"about_ca_system_score_gemma":0.00010632254,"threshold_uncertainty_score":0.99998105},"labels":[],"label_agreement":null},{"id":"W2358136176","doi":"","title":"Prevalence of positive HBsAg in adults:a rural community study in China","year":2008,"lang":"en","type":"article","venue":"Fudan xuebao. Yixue ban","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"HBsAg; Medicine; Demography; China; Cross-sectional study; Internal medicine; Hepatitis B virus; Immunology; Geography; Pathology; Virus","score_opus":0.015470174239270044,"score_gpt":0.27725249118031337,"score_spread":0.2617823169410433,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2358136176","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953636,0.00007763232,0.0000029742753,0.00022173332,0.00010626174,0.0008356911,0.000029123892,0.000038264985,0.003324735],"genre_scores_gemma":[0.9993516,0.00004610121,0.00001448809,0.000118574135,0.000049454306,0.000044778077,0.000008882115,0.000016770884,0.0003493477],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984926,0.0004413387,0.00042135036,0.00016117858,0.00022357584,0.0002599385],"domain_scores_gemma":[0.999158,0.000096625714,0.00009894183,0.00047160714,0.00007125689,0.00010356542],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003215472,0.00016893976,0.0003687781,0.00031212083,0.00014793579,0.0000040509344,0.00016437238,0.000089041765,0.000054955348],"category_scores_gemma":[0.00016547489,0.00014959267,0.00007742803,0.00053717947,0.00016965966,0.00012381488,0.000076805394,0.00074996875,0.000018346067],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017965073,0.0025076675,0.98002106,0.00017047384,0.000022487777,0.0001594025,0.013231815,0.000019269257,0.003313644,0.00001709337,0.00004720652,0.00031021537],"study_design_scores_gemma":[0.0028359755,0.0015114093,0.9917393,0.0005957638,0.000027954704,0.000104648585,0.0022822833,0.000038430007,0.0006768222,0.000014648529,0.00003956886,0.00013321987],"about_ca_topic_score_codex":0.0029931252,"about_ca_topic_score_gemma":0.0017752474,"teacher_disagreement_score":0.0117182005,"about_ca_system_score_codex":0.00012614278,"about_ca_system_score_gemma":0.0001324214,"threshold_uncertainty_score":0.61002123},"labels":[],"label_agreement":null},{"id":"W2360683098","doi":"","title":"The analysis of resistance for the proteus to commonly used antibiotics","year":2003,"lang":"en","type":"article","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"CAE (Canada)","funders":"","keywords":"Cefoxitin; Cefepime; Ceftazidime; Piperacillin; Imipenem; Microbiology; Cefuroxime; Nitrofurantoin; Medicine; Penicillin; Cefazolin; Ampicillin; Amikacin; Trimethoprim; Antibiotics; Antibiotic resistance; Biology; Bacteria","score_opus":0.028593901171038816,"score_gpt":0.3241386015885089,"score_spread":0.29554470041747005,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2360683098","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8954885,0.0003670547,0.03636028,0.035078607,0.00033749233,0.0038858952,0.000044096698,0.00008334258,0.028354745],"genre_scores_gemma":[0.9930188,0.00001422772,0.0002914984,0.00073749205,0.000015154009,0.000009376477,8.781032e-7,0.00000560262,0.0059069726],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9995153,0.000031890915,0.00015711566,0.000078108416,0.000106977815,0.00011059525],"domain_scores_gemma":[0.9990699,0.00036808505,0.000043153974,0.00036033336,0.00011653575,0.000041989537],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002864346,0.00005132131,0.00014786609,0.0000600919,0.00023126103,0.000011102798,0.00006576176,0.000027541142,0.000016264232],"category_scores_gemma":[0.00030463157,0.000022181172,0.00013514972,0.0006710271,0.00005988736,0.000009086365,0.0000065731465,0.000052093565,0.0000030831136],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00050080154,0.0009793432,0.48870093,0.00024585,0.011139075,0.000009432755,0.0017023354,0.0015987174,0.27959734,0.16825965,0.042322688,0.004943823],"study_design_scores_gemma":[0.00052755506,0.00017954624,0.1366444,0.000019922492,0.001892752,0.0000021221485,0.00056511373,0.00037289507,0.03276346,0.0001114175,0.8268365,0.00008428767],"about_ca_topic_score_codex":0.000009918897,"about_ca_topic_score_gemma":0.0010480903,"teacher_disagreement_score":0.78451383,"about_ca_system_score_codex":0.000013845265,"about_ca_system_score_gemma":0.00005072983,"threshold_uncertainty_score":0.17786963},"labels":[],"label_agreement":null},{"id":"W2365137596","doi":"","title":"Epidemiologic analysis of MP infection in children in Jiangsu Hai'an district from 2000 to 2009","year":2011,"lang":"en","type":"article","venue":"Journal of Nantong University","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Mycoplasma pneumoniae; Bronchitis; Quarter (Canadian coin); Medicine; Infection rate; Epidemiology; Lobar pneumonia; Pneumonia; Male to female; Mycoplasma pneumonia; Veterinary medicine; Demography; Pediatrics; Internal medicine; Surgery; Geography","score_opus":0.02960834180464633,"score_gpt":0.26339817334914367,"score_spread":0.23378983154449734,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2365137596","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987504,0.000030244206,0.0003829332,0.00016090965,0.00005669398,0.00007842405,0.00002167362,0.000005714878,0.0005130386],"genre_scores_gemma":[0.99957216,0.000130975,0.0001289677,0.00008444202,0.000029371493,6.236541e-8,0.000005399241,0.0000026714777,0.000045964935],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99918103,0.00017554275,0.00030935698,0.00010928805,0.00010426598,0.000120490244],"domain_scores_gemma":[0.99931765,0.00005262857,0.000266309,0.00012623287,0.0000978696,0.00013931104],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038341255,0.0000757407,0.00043914223,0.0013411962,0.000031946573,0.0000018617244,0.000085574306,0.000097966404,0.000115533236],"category_scores_gemma":[0.00013315646,0.000063136504,0.0001829187,0.001510125,0.000031638167,0.00017620294,0.000020497435,0.00024327272,0.000002991268],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001461033,0.0003585127,0.995712,0.0000018891593,0.0002812108,0.00009221436,0.00040662818,0.00047479023,0.001710393,0.000018310677,0.000047475787,0.00075050426],"study_design_scores_gemma":[0.0007128879,0.00040422918,0.9974891,0.000043129316,0.00057234115,0.00001928549,0.00011891799,0.00010006932,0.0001804647,0.000021753234,0.00027909558,0.000058709305],"about_ca_topic_score_codex":0.0058724135,"about_ca_topic_score_gemma":0.0021420585,"teacher_disagreement_score":0.003730355,"about_ca_system_score_codex":0.00026386292,"about_ca_system_score_gemma":0.00010808665,"threshold_uncertainty_score":0.88773715},"labels":[],"label_agreement":null},{"id":"W2365349812","doi":"","title":"Retrospective analysis on the measurement results of antibodies against Mycoplasma pneumoniae in infants and children","year":2014,"lang":"en","type":"article","venue":"Fujian yiyao zazhi","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Mycoplasma pneumoniae; Mycoplasma; Medicine; Antibody; Internal medicine; Bronchopneumonia; Quarter (Canadian coin); Gastroenterology; Pediatrics; Immunology; Biology; Microbiology; Pneumonia","score_opus":0.01442703211539508,"score_gpt":0.2445777188021554,"score_spread":0.2301506866867603,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2365349812","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9837223,0.00003908403,0.000007504859,0.0015171818,0.00007980734,0.000315863,0.000041434465,0.000030024043,0.0142467795],"genre_scores_gemma":[0.9991872,0.00008824194,0.000011336523,0.00052133744,0.000077010794,0.000011361213,0.000010426881,0.000012639249,0.00008048689],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985363,0.00012188585,0.00037612513,0.00032187364,0.00041991964,0.00022392435],"domain_scores_gemma":[0.99906456,0.00008388487,0.00016121249,0.0004620911,0.00014544773,0.000082778846],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00079876627,0.00017192795,0.00044527953,0.00042475516,0.00012500893,0.000016889655,0.00008530487,0.00008930412,0.000009583843],"category_scores_gemma":[0.00063315214,0.000111211266,0.00013248094,0.0007393365,0.00014679952,0.000042420994,0.000038469356,0.00026266839,0.0000150011],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011552998,0.00015577412,0.9776058,0.00001302506,0.0005054239,0.000004777636,0.00071615935,0.00008911875,0.01918515,0.00021822528,0.00025814772,0.001132834],"study_design_scores_gemma":[0.0011701471,0.00032242565,0.99454546,0.00014116373,0.00025401454,0.000008688943,0.0000794411,0.00033037318,0.002242736,0.00006657756,0.0007233764,0.00011559009],"about_ca_topic_score_codex":0.000083143714,"about_ca_topic_score_gemma":0.0005156245,"teacher_disagreement_score":0.016942414,"about_ca_system_score_codex":0.00009369463,"about_ca_system_score_gemma":0.000044215023,"threshold_uncertainty_score":0.45350638},"labels":[],"label_agreement":null},{"id":"W2367538370","doi":"","title":"Eff ectiveness of pneumococcal conjugate vaccine","year":2006,"lang":"en","type":"article","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Vaccination; Herd immunity; Pneumococcal disease; Serotype; Clinical trial; Pediatrics; Pneumococcal vaccine; Pneumococcal infections; Streptococcus pneumoniae; Immunology; Internal medicine; Antibiotics; Biology; Microbiology","score_opus":0.0052205000708008455,"score_gpt":0.24485343898083067,"score_spread":0.23963293891002982,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2367538370","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9472892,0.000031092433,0.00046639494,0.00063438463,0.00011379135,0.00016828628,0.0000029928178,0.00007144695,0.05122237],"genre_scores_gemma":[0.99789226,0.0000046203604,0.000031789554,0.00016887502,0.0001374305,0.000009754921,0.0000048282127,0.000009488442,0.0017409404],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994621,0.000020892987,0.00019051725,0.000114641305,0.000090763046,0.00012104777],"domain_scores_gemma":[0.99962914,0.000034293138,0.00004038573,0.00015203135,0.000093714676,0.00005045493],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006968759,0.00007755502,0.00020374257,0.00008203742,0.000038389277,0.0000029510477,0.000028123115,0.000055446453,0.00030304943],"category_scores_gemma":[0.00001556135,0.00005568085,0.00008014047,0.00015647909,0.000030002593,0.00003175526,0.000013624651,0.00007814907,0.000055780616],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003285564,0.00023249285,0.21261893,0.000043771226,0.000027145521,0.000016615339,0.000006325095,0.000034910943,0.7835505,0.0027649405,0.0002457184,0.00042581442],"study_design_scores_gemma":[0.001263825,0.00027046795,0.8319554,0.000030194267,0.00005785473,0.00009032551,0.000014601513,0.000065865344,0.14652601,0.0003351773,0.019313363,0.00007693131],"about_ca_topic_score_codex":0.00011872358,"about_ca_topic_score_gemma":0.000036744943,"teacher_disagreement_score":0.63702446,"about_ca_system_score_codex":0.000020795625,"about_ca_system_score_gemma":0.000045612087,"threshold_uncertainty_score":0.33181787},"labels":[],"label_agreement":null},{"id":"W2375395595","doi":"","title":"Epidemiologic Study on Mycoplasma Pneumoniae Infection in Children in Xi'an in 2006","year":2008,"lang":"en","type":"article","venue":"Xiandai jianyan yixue zazhi","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Mycoplasma pneumoniae; Medicine; Incidence (geometry); Etiology; Mycoplasma; Quarter (Canadian coin); Internal medicine; Respiratory tract infections; Pediatrics; Respiratory infection; Gastroenterology; Respiratory system; Pneumonia; Biology; Microbiology","score_opus":0.03542157802032491,"score_gpt":0.3116700075912413,"score_spread":0.2762484295709164,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2375395595","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951114,0.000047743706,0.000008702579,0.0006801393,0.00026479908,0.0013615366,0.00001156447,0.00012380439,0.002390299],"genre_scores_gemma":[0.9980799,0.00014063968,0.000012124767,0.0010744196,0.00018115847,0.00015029038,0.000028096827,0.00004047202,0.00029289638],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99705684,0.0006431915,0.0007888502,0.0006587129,0.0002623085,0.00059007114],"domain_scores_gemma":[0.9989399,0.00013960496,0.00013413934,0.00053063204,0.00004219695,0.0002135692],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009383503,0.0003439064,0.0007306024,0.0011794654,0.00014943013,0.000014851649,0.00012563165,0.00030565864,0.00007027405],"category_scores_gemma":[0.0004479271,0.00029868662,0.00011455851,0.0012340382,0.00010769643,0.00021134134,0.000044421413,0.0009863775,0.00019710952],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008179392,0.0027910701,0.9919248,0.0000106927455,0.000021697442,0.0003365449,0.0009249776,0.00095192704,0.0020838063,0.000028016588,0.00014706577,0.00069757015],"study_design_scores_gemma":[0.003995308,0.001859315,0.99199337,0.00012750977,0.000018317996,0.000597028,0.0001268139,0.00016461409,0.00012573467,0.00006804295,0.0006371782,0.00028677736],"about_ca_topic_score_codex":0.0020972062,"about_ca_topic_score_gemma":0.0052450513,"teacher_disagreement_score":0.0039135143,"about_ca_system_score_codex":0.00037338797,"about_ca_system_score_gemma":0.0001631519,"threshold_uncertainty_score":0.99994653},"labels":[],"label_agreement":null},{"id":"W2379099349","doi":"","title":"Study of Epidemic Regulation of Mycoplasmal Pneumonia in Beijing","year":2006,"lang":"en","type":"article","venue":"Testowy IndexCopernicus","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Incidence (geometry); Pneumonia; Beijing; Medicine; Pediatrics; Mycoplasma pneumonia; Quarter (Canadian coin); Mycoplasma pneumoniae; Mycoplasma; Demography; Internal medicine; Biology; Geography","score_opus":0.02111368808394117,"score_gpt":0.2842342627530628,"score_spread":0.26312057466912164,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2379099349","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959898,0.00010144404,0.000010314207,0.00010230731,0.0001005889,0.00051609694,0.000004018827,0.000042600128,0.0031328415],"genre_scores_gemma":[0.9995495,0.000004290975,0.00004066775,0.00003377875,0.00006768638,0.000023957558,0.000005649508,0.00001893617,0.0002555018],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985508,0.0000842284,0.00069000985,0.00021542069,0.0002620463,0.0001974962],"domain_scores_gemma":[0.9991624,0.00012403386,0.00023094368,0.0003212399,0.000114200775,0.00004722143],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002988875,0.00013742829,0.00043379818,0.00033231176,0.00003898257,0.0000032720889,0.00007663524,0.00011544988,0.0000615829],"category_scores_gemma":[0.00013431029,0.000118479424,0.00007213741,0.0004906365,0.00007043576,0.00007633899,0.00003415044,0.00022360342,0.00001573302],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029745366,0.0009369207,0.72579163,0.000037959697,0.00001861594,0.000018375922,0.00024201041,0.0019949824,0.27037022,0.000054972552,0.000033755416,0.0004708399],"study_design_scores_gemma":[0.002031206,0.00079133036,0.9913865,0.00014289506,0.000078798344,0.000064342225,0.00034887137,0.00039674962,0.0043843347,0.00006681195,0.00020410451,0.00010405563],"about_ca_topic_score_codex":0.00077884755,"about_ca_topic_score_gemma":0.00054199976,"teacher_disagreement_score":0.26598588,"about_ca_system_score_codex":0.00007799253,"about_ca_system_score_gemma":0.0001115556,"threshold_uncertainty_score":0.48314506},"labels":[],"label_agreement":null},{"id":"W2391445907","doi":"10.2217/ebo.11.37","title":"Etiology and pathophysiology","year":2011,"lang":"en","type":"other","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University Medical Centre; Capital District Health Authority","funders":"","keywords":"Etiology; Pathophysiology; Medicine; Pathology","score_opus":0.015516007406312177,"score_gpt":0.25858993746611686,"score_spread":0.24307393005980468,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2391445907","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00030435415,0.00024344373,0.000031326632,0.00017601845,0.0002332334,0.00011442061,0.0000041807634,0.00014330637,0.99874973],"genre_scores_gemma":[0.00064700755,0.0006722631,0.00009781725,0.0024342663,0.0002784968,0.000012812065,0.000008557542,0.00010639532,0.9957424],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9996884,0.000017399263,0.000055700086,0.00013647742,0.000016919343,0.00008509037],"domain_scores_gemma":[0.9997702,0.0000069964954,0.000028585066,0.00013262627,0.000007117919,0.000054453714],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000012893575,0.00008654768,0.00020827574,0.000110456436,0.000011959387,7.3877425e-7,0.000014854173,0.00030441885,0.010692017],"category_scores_gemma":[0.000007943722,0.0000575279,0.00003086731,0.000022525532,0.00009869449,0.0000023491775,0.00001714144,0.00011297568,0.00051858264],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000006013196,0.00004910569,0.0020428803,0.00007270787,0.00008939805,0.00003709498,0.00001482877,2.1746573e-9,0.008911874,0.0020968937,0.98348534,0.0031938534],"study_design_scores_gemma":[0.00019853826,0.00019128335,0.004540806,0.000026297466,0.000047062513,0.00007168403,0.0000038050232,2.2810369e-7,0.000014484739,0.0002058594,0.99463594,0.000063996646],"about_ca_topic_score_codex":0.000056945177,"about_ca_topic_score_gemma":0.00003190315,"teacher_disagreement_score":0.011150607,"about_ca_system_score_codex":0.0000032291189,"about_ca_system_score_gemma":0.000023494276,"threshold_uncertainty_score":0.9902123},"labels":[],"label_agreement":null},{"id":"W2404699019","doi":"10.1155/2000/742970","title":"Care Plan for Community‐Acquired Pneumonia","year":2000,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval; Sault Area Hospital; St. Boniface Hospital; Hôpital Charles-Le Moyne; Moncton Hospital; University of Alberta","funders":"","keywords":"Pneumonia; Community-acquired pneumonia; Medicine; Intensive care medicine; Antibiotics; Randomized controlled trial; Critical pathways; Emergency medicine; Internal medicine; Business; Biology","score_opus":0.009490852687331696,"score_gpt":0.2483007123213824,"score_spread":0.23880985963405071,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2404699019","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945742,0.0021169807,0.000025620686,0.0017005866,0.00044216771,0.0001834751,0.00017727097,0.000014275764,0.0007654271],"genre_scores_gemma":[0.99518806,0.00024154362,0.0000065199174,0.004076102,0.00032985088,0.000007449807,0.000044681874,0.000013654817,0.000092164],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991591,0.000113675866,0.0002986765,0.000090852256,0.00004513201,0.0002925629],"domain_scores_gemma":[0.9980168,0.00013616116,0.000074161595,0.00011652586,0.00017722492,0.0014791322],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012553942,0.000122052785,0.00034126654,0.00019561546,0.00038545168,0.000016066664,0.000087116125,0.00019702894,0.00078903366],"category_scores_gemma":[0.00029417034,0.00009428873,0.00016697109,0.000084472835,0.0003692651,0.00003472153,0.00000633092,0.00029408277,0.000008498462],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003941164,0.0005137943,0.7297573,0.0007279985,0.00091313565,0.0013300569,0.002814367,0.000020861984,0.028617658,0.00033374137,0.014728817,0.21984813],"study_design_scores_gemma":[0.0053940043,0.0041266363,0.14370376,0.0004290284,0.0005589671,0.019423697,0.00096493727,0.000008168279,0.00010501416,0.0002598907,0.82474643,0.00027947573],"about_ca_topic_score_codex":0.0012790463,"about_ca_topic_score_gemma":0.0077581643,"teacher_disagreement_score":0.8100176,"about_ca_system_score_codex":0.0001151942,"about_ca_system_score_gemma":0.0016353732,"threshold_uncertainty_score":0.86393654},"labels":[],"label_agreement":null},{"id":"W2407750931","doi":"","title":"[New microbiological data on the susceptibility of Pneumococci to levofloxacin].","year":2002,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Levofloxacin; Medicine; DNA gyrase; Streptococcus pneumoniae; Penicillin; Medical prescription; Microbiology; Antibiotic resistance; Topoisomerase IV; Isolation (microbiology); Antibiotics; Pharmacology; Biology; Genetics; Escherichia coli","score_opus":0.14066167554434147,"score_gpt":0.28087773639435704,"score_spread":0.14021606085001556,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2407750931","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96577746,0.000049154944,0.000035549507,0.020600373,0.00022541353,0.0012570663,0.00006257598,0.00008660601,0.0119057875],"genre_scores_gemma":[0.9948491,0.000010742081,0.00003477709,0.0027139555,0.00016261438,0.0001113965,0.000008570596,0.000007213199,0.002101635],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9991048,0.00006626201,0.00019920441,0.00027748785,0.0001101601,0.00024211353],"domain_scores_gemma":[0.9986068,0.00014073814,0.00004119738,0.0010049104,0.000035577516,0.00017079369],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033088276,0.00009618285,0.00018695516,0.000051729145,0.000061247585,0.000008148956,0.00025680408,0.000069464004,0.00043252305],"category_scores_gemma":[0.0006004605,0.000051847892,0.00006217148,0.0002214548,0.00006523949,0.000029354731,0.000124089,0.00017421307,0.00017060262],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015256794,0.0014154924,0.1555109,0.000072966264,0.0002161342,0.000028008142,0.00028731223,0.00001054715,0.23653708,0.00092131924,0.3998726,0.20497505],"study_design_scores_gemma":[0.00035664704,0.00017331984,0.8443068,0.000011841276,0.000043585853,0.000022698207,0.000023811308,0.00001613498,0.0051238746,0.000043474432,0.14979017,0.00008763899],"about_ca_topic_score_codex":0.000016713453,"about_ca_topic_score_gemma":0.00002935239,"teacher_disagreement_score":0.6887959,"about_ca_system_score_codex":0.000033076558,"about_ca_system_score_gemma":0.000015645934,"threshold_uncertainty_score":0.47358242},"labels":[],"label_agreement":null},{"id":"W2408768430","doi":"10.2119/molmed.2014.00263","title":"Modular Transcriptional Networks of the Host Pulmonary Response during Early and Late Pneumococcal Pneumonia","year":2015,"lang":"en","type":"article","venue":"Molecular Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Biology; In silico; Streptococcus pneumoniae; Pneumococcal pneumonia; Gene regulatory network; Computational biology; Signal transduction; Gene; Pneumonia; Systems biology; Transcriptional regulation; Microarray analysis techniques; Transcription factor; Gene expression; Antibiotics; Cell biology; Genetics; Medicine","score_opus":0.013780075762963861,"score_gpt":0.24165984439656116,"score_spread":0.2278797686335973,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2408768430","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99045223,0.0010942556,0.00036347596,0.006887662,0.00032237798,0.0003618968,0.000004338612,0.000043462587,0.0004703034],"genre_scores_gemma":[0.9986472,0.00003726401,0.000014560173,0.0006535989,0.00014579091,0.000019101131,0.000004058435,0.00002971844,0.00044868258],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99849254,0.0002174394,0.00033677093,0.0002575759,0.00044479605,0.00025088526],"domain_scores_gemma":[0.99902743,0.00004378194,0.000089359484,0.00038708138,0.00014781147,0.00030454004],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046366238,0.00018685845,0.00033899074,0.00013584661,0.000108548134,0.0000059038543,0.0001073549,0.00013332655,0.000016856078],"category_scores_gemma":[0.00020151997,0.00012107887,0.00010635254,0.00034585298,0.00042559567,0.00005118026,0.000052468713,0.00035712557,0.000003403549],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045378253,0.00007287168,0.0155907655,0.00003904642,0.00006195457,0.00030757042,0.00030094548,0.00030392734,0.9826887,0.0000779619,4.933149e-7,0.000101978905],"study_design_scores_gemma":[0.0017258573,0.00046554668,0.98940694,0.00024873076,0.0001651177,0.00061658793,0.00005845888,0.00095784175,0.004369548,0.00007109514,0.0018032787,0.00011099469],"about_ca_topic_score_codex":0.00003291612,"about_ca_topic_score_gemma":0.0000022215572,"teacher_disagreement_score":0.97831917,"about_ca_system_score_codex":0.000050566938,"about_ca_system_score_gemma":0.00010291807,"threshold_uncertainty_score":0.4937453},"labels":[{"model":"gemma","categories":[],"domain":null,"study_design":"observational","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"low"},{"model":"gpt","categories":[],"domain":null,"study_design":"bench_or_experimental","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"high"}],"label_agreement":"split"},{"id":"W2409154174","doi":"","title":"[Results of a survey of community-acquired-pneumonia and evaluation of old and new Japanese Respiratory Society guidelines].","year":2007,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Aging","funders":"","keywords":"Medicine; Pneumonia; Pneumonia severity index; Community-acquired pneumonia; Internal medicine; Intensive care medicine","score_opus":0.24809710965706921,"score_gpt":0.3742740217182585,"score_spread":0.1261769120611893,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2409154174","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99757445,0.0007039641,0.000011480079,0.00031941355,0.000077991455,0.0006544361,0.00004793936,0.000015171402,0.0005951435],"genre_scores_gemma":[0.9992942,0.000055579258,0.00003819899,0.00041679404,0.000040810297,0.000029110892,0.000013311769,0.000012422847,0.00009957412],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981474,0.00034036138,0.0007703409,0.0001261552,0.00042449878,0.00019121301],"domain_scores_gemma":[0.99764454,0.00039807797,0.00035076015,0.0003682774,0.0010579337,0.0001803831],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0082355235,0.00011870436,0.00037797735,0.00012400484,0.00006432664,0.000004049414,0.000064803746,0.00013289924,0.0000031327456],"category_scores_gemma":[0.0022520705,0.000101474565,0.00007077606,0.0003441261,0.00026156486,0.00006648152,0.00006139961,0.0001391994,2.0447594e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008000857,0.00069377065,0.5272908,0.0006060277,0.00042451307,0.0000020172527,0.006990874,0.000041886855,0.17836514,0.000019200243,0.0045904564,0.2801752],"study_design_scores_gemma":[0.0031679864,0.00016967331,0.9886383,0.00004426441,0.00017724093,0.000011502278,0.0004939341,0.000065388034,0.006245315,0.000020860043,0.00089070265,0.00007483817],"about_ca_topic_score_codex":0.0030966934,"about_ca_topic_score_gemma":0.0008484284,"teacher_disagreement_score":0.4613475,"about_ca_system_score_codex":0.000037946913,"about_ca_system_score_gemma":0.00015045675,"threshold_uncertainty_score":0.46812946},"labels":[],"label_agreement":null},{"id":"W2409321487","doi":"","title":"Successful implementation of a combined pneumococcal and influenza vaccination program in a Canadian emergency department.","year":2005,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University; Jewish General Hospital","funders":"","keywords":"Medicine; Vaccination; Emergency department; Confidence interval; Pneumococcal vaccine; Pneumococcal vaccination; Cohort; Influenza vaccine; Pediatrics; Family medicine; Internal medicine; Immunology; Streptococcus pneumoniae","score_opus":0.017480921577080383,"score_gpt":0.3157459901685759,"score_spread":0.29826506859149554,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2409321487","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99558103,0.00005718548,0.0000012010757,0.0015038673,0.000060827442,0.0017616821,0.0000098849005,0.000028138049,0.0009962108],"genre_scores_gemma":[0.9976238,0.000028666987,0.000016025806,0.0001682814,0.000038502174,0.0020702293,0.000019021909,0.000007656996,0.000027802296],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991995,0.000026796897,0.0002769237,0.00012303627,0.00009234235,0.0002813712],"domain_scores_gemma":[0.99956566,0.000007592778,0.000061733896,0.00008389588,0.00005667849,0.00022443941],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015607475,0.00007438204,0.00012757358,0.00028330562,0.00004132524,0.0000071483064,0.000026700764,0.000049004477,0.00008630838],"category_scores_gemma":[0.0000308609,0.0000698848,0.000027840704,0.0002747907,0.000011708349,0.000119567405,0.0000094570205,0.00006951189,0.0000021784047],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011127731,0.000109997985,0.80509233,0.00002768104,0.00001679409,0.000002500192,0.000098938435,0.0000022327372,0.00027728576,0.00006983791,0.00003959891,0.19425166],"study_design_scores_gemma":[0.0013936999,0.000107034815,0.98133546,0.0000036619047,0.000030730098,0.0000067454957,0.00008117192,0.000047694688,0.000597366,0.00002523127,0.016310854,0.000060327136],"about_ca_topic_score_codex":0.015874196,"about_ca_topic_score_gemma":0.3934299,"teacher_disagreement_score":0.37755573,"about_ca_system_score_codex":0.0001658992,"about_ca_system_score_gemma":0.00010190562,"threshold_uncertainty_score":0.9906792},"labels":[],"label_agreement":null},{"id":"W2409698911","doi":"10.1080/1120009x.2002.11782349","title":"Prevalence and Characterization of Macrolide Resistance in Clinical Isolates of <i>Streptococcus pneumoniae</i> and <i>Streptococcus pyogenes</i> from North America","year":2002,"lang":"en","type":"article","venue":"Journal of Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Sciences Centre; Manitoba Health","funders":"","keywords":"Streptococcus pyogenes; Telithromycin; Ketolide; Streptococcus pneumoniae; Erythromycin; Microbiology; Efflux; Biology; Drug resistance; Macrolide Antibiotics; Antibacterial agent; Antibiotics; Bacteria; Genetics; Staphylococcus aureus","score_opus":0.013928914784051253,"score_gpt":0.2695377202944711,"score_spread":0.25560880551041987,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2409698911","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971012,0.0012620349,0.000045361747,0.0011597208,0.00006941251,0.0002343651,0.000036091365,0.0000062307404,0.00008560484],"genre_scores_gemma":[0.98459697,0.014410615,0.00012297448,0.0006420437,0.00012427129,0.000004200325,0.000001849117,0.000016724303,0.00008034812],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984445,0.000077873025,0.0010069433,0.00016700728,0.00017381445,0.0001298606],"domain_scores_gemma":[0.99848396,0.00013733264,0.0009203365,0.00018043468,0.00016125893,0.00011667955],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016224047,0.00013848879,0.0005769284,0.00012361628,0.000024707313,0.000008669938,0.0000769298,0.00009833064,0.000056915742],"category_scores_gemma":[0.000054802254,0.000111656045,0.00011672717,0.00020803112,0.00021903995,0.00012661445,0.00001366511,0.00023936239,6.628058e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011573588,0.0002195422,0.6112315,0.000088444714,0.000054764474,0.000010760972,0.0003158444,8.566127e-7,0.38011768,5.700608e-7,0.000034239612,0.0078100334],"study_design_scores_gemma":[0.0023929405,0.00060963095,0.9633653,0.00041087143,0.00007279114,0.000027341059,0.00002061873,0.000053743595,0.027065426,0.00003497151,0.005847451,0.000098887176],"about_ca_topic_score_codex":0.0000040031496,"about_ca_topic_score_gemma":0.000012999143,"teacher_disagreement_score":0.35305226,"about_ca_system_score_codex":0.000017205228,"about_ca_system_score_gemma":0.00004299695,"threshold_uncertainty_score":0.45532015},"labels":[],"label_agreement":null},{"id":"W2409842392","doi":"","title":"Invasive pneumococcal infection in first nations children in northern Alberta.","year":2002,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Stollery Children's Hospital","funders":"","keywords":"Pneumococcal disease; Streptococcus pneumoniae; Geography; Medicine; Biology; Microbiology; Antibiotics","score_opus":0.01672048743899623,"score_gpt":0.2164490965630365,"score_spread":0.19972860912404028,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2409842392","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9775125,0.000034955865,0.000001992532,0.003141033,0.00014147468,0.001029958,0.000002925866,0.00004010117,0.018095072],"genre_scores_gemma":[0.99700403,0.00016173394,0.0000011997971,0.0002966093,0.00011444221,0.0015954027,0.000013761325,0.000015697115,0.0007971051],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991092,0.000038201273,0.00024174932,0.00020345401,0.0001144529,0.00029294632],"domain_scores_gemma":[0.999489,0.00015548189,0.000045661374,0.00016055405,0.000034383087,0.00011491739],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000092685164,0.00011139307,0.00016960946,0.000545774,0.000098557895,0.000013690727,0.000041205534,0.00010816562,0.000073038536],"category_scores_gemma":[0.0006074559,0.000103415514,0.00006500368,0.0007748023,0.00004010142,0.000119172066,0.000019732975,0.00024751655,0.00012892658],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000042800175,0.0003608732,0.99638003,0.000015726491,0.000017973041,0.000012434441,0.00020591571,0.00011781847,0.00007505829,0.00003187306,0.00005669733,0.0027212992],"study_design_scores_gemma":[0.0010653825,0.0000296864,0.9952954,0.000029713341,0.000016616365,0.00006855418,0.0000071851923,0.000039711296,0.00007967248,0.000019600238,0.0032455758,0.00010288827],"about_ca_topic_score_codex":0.0023114455,"about_ca_topic_score_gemma":0.51365614,"teacher_disagreement_score":0.5113447,"about_ca_system_score_codex":0.00022527519,"about_ca_system_score_gemma":0.000023333023,"threshold_uncertainty_score":0.4952184},"labels":[],"label_agreement":null},{"id":"W2411643114","doi":"10.1128/jcm.00419-16","title":"PCR-Based Serotyping of Streptococcus pneumoniae from Culture-Negative Specimens: Novel Primers for Detection of Serotypes within Serogroup 18","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Serotype; Streptococcus pneumoniae; Biology; Microbiology; Virology; Streptococcaceae; Polymerase chain reaction; Gene; Genetics; Antibiotics","score_opus":0.07908602359804348,"score_gpt":0.37943292152354896,"score_spread":0.3003468979255055,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2411643114","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9888227,0.00007810988,0.008725213,0.0006594321,0.0010248879,0.0004893799,0.00015517771,0.000012066012,0.000033033397],"genre_scores_gemma":[0.9955733,0.000037159105,0.0034893951,0.00034802503,0.00046519673,0.000008087416,0.000004853773,0.00001897779,0.000055004155],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99737036,0.00019577559,0.0019298232,0.00023063702,0.000077381614,0.00019600942],"domain_scores_gemma":[0.99520284,0.001471242,0.0022004896,0.00020908269,0.00078220526,0.00013411569],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00082805933,0.0001775,0.0010311203,0.00015521212,0.000047020232,0.000003426478,0.00013755372,0.00039602089,0.000055350276],"category_scores_gemma":[0.0016745493,0.00010269807,0.00060386024,0.00013732376,0.0004110222,0.0000792557,0.000026359825,0.00038454507,0.0000045747583],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012464789,0.00051586534,0.03214897,0.000048227488,0.00054552825,0.000002864018,0.0000795798,0.000021165437,0.9630141,0.00001618655,0.000074634394,0.002286399],"study_design_scores_gemma":[0.00948831,0.006985047,0.06427901,0.00078759,0.0004725843,0.0000676295,0.00015024279,0.000024532243,0.91048723,0.00022777099,0.006873154,0.00015687042],"about_ca_topic_score_codex":0.000011198696,"about_ca_topic_score_gemma":0.000034427645,"teacher_disagreement_score":0.052526847,"about_ca_system_score_codex":0.000057325964,"about_ca_system_score_gemma":0.00032776763,"threshold_uncertainty_score":0.41879058},"labels":[],"label_agreement":null},{"id":"W2411994009","doi":"10.1080/1120009x.2004.11782402","title":"Resistance Trends in <i>Haemophilus influenzae</i> (PROTEKT Years 1–3 [1999–2002])","year":2004,"lang":"en","type":"article","venue":"Journal of Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital","funders":"","keywords":"Haemophilus influenzae; Microbiology; Pasteurellaceae; Resistance (ecology); Medicine; Biology; Antibiotics; Ecology","score_opus":0.013490655221886503,"score_gpt":0.2883297120216597,"score_spread":0.27483905679977316,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2411994009","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98130345,0.0010014033,0.00008801095,0.012808091,0.00023022623,0.000100518155,0.0000019087422,0.000020722247,0.0044456613],"genre_scores_gemma":[0.98915404,0.00045107206,0.00075400464,0.007833081,0.000554217,0.0000036048714,5.282981e-7,0.000034131244,0.0012153282],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99890405,0.000023153538,0.00047076066,0.00010869634,0.00029476598,0.00019859221],"domain_scores_gemma":[0.9993246,0.000017411603,0.00024379774,0.000181697,0.000094503914,0.00013798042],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022313076,0.00012333046,0.00034700424,0.00043144976,0.00003199675,0.000015228998,0.00009942171,0.000110832676,0.00015308993],"category_scores_gemma":[0.000028684066,0.00010069826,0.00019544062,0.0005440692,0.00006147776,0.0001289323,0.00000557824,0.00040824804,0.000015917089],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0036363455,0.0034302627,0.05912567,0.00018640303,0.000692013,0.0042936774,0.005066221,0.0013487014,0.74161065,0.00075094035,0.03091965,0.14893945],"study_design_scores_gemma":[0.016373519,0.00094559346,0.3314274,0.00058365514,0.00005502187,0.0012673873,0.000070159724,0.000002246701,0.020288328,0.0020090404,0.6267117,0.0002659128],"about_ca_topic_score_codex":0.0000066882467,"about_ca_topic_score_gemma":0.000030279223,"teacher_disagreement_score":0.72132236,"about_ca_system_score_codex":0.00020437609,"about_ca_system_score_gemma":0.00017642719,"threshold_uncertainty_score":0.41063556},"labels":[],"label_agreement":null},{"id":"W2414869672","doi":"","title":"Guideline adherence for empirical treatment of pneumonia and patient outcome. Treating pneumonia in the Netherlands.","year":2013,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Medicine; Guideline; Concordance; Pneumonia severity index; Community-acquired pneumonia; Pneumonia; Observational study; Internal medicine; Intensive care unit; Antibiotics; Intensive care medicine; Emergency medicine; Pediatrics","score_opus":0.07218344108343118,"score_gpt":0.33088512185214114,"score_spread":0.25870168076871,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2414869672","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9904948,0.00019321196,0.000023855877,0.005990263,0.00007791755,0.0024034402,0.000011182559,0.000021729464,0.0007835934],"genre_scores_gemma":[0.9940062,0.000036115194,0.00011211627,0.00096416374,0.00006509971,0.0046427776,0.0000065766517,0.000012639761,0.0001543204],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99883276,0.000057388763,0.00050569704,0.00019403396,0.0001325745,0.0002775376],"domain_scores_gemma":[0.9992747,0.0002093872,0.00011587965,0.0002203985,0.0000783939,0.000101280224],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015234236,0.00014256268,0.0003082592,0.000086427215,0.000065381224,0.000018109919,0.000051280207,0.000068892565,0.000011090423],"category_scores_gemma":[0.00013908884,0.000077372744,0.000095349074,0.00015189384,0.000060700215,0.000047443587,0.000012791232,0.00006757446,0.000003313737],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025131836,0.0003877186,0.7216897,0.000025750627,0.00003299894,0.0000053999697,0.0009450626,0.00000671268,0.001650571,0.00000850734,0.0003599535,0.27486247],"study_design_scores_gemma":[0.0015135548,0.0009136915,0.9793392,0.000011355419,0.00006747258,0.0000418724,0.00042198,0.00028186067,0.000314606,0.00007288375,0.016935349,0.00008618925],"about_ca_topic_score_codex":0.00018487917,"about_ca_topic_score_gemma":0.00007254017,"teacher_disagreement_score":0.27477628,"about_ca_system_score_codex":0.000062265164,"about_ca_system_score_gemma":0.000026639964,"threshold_uncertainty_score":0.3155169},"labels":[],"label_agreement":null},{"id":"W2416798083","doi":"10.1056/nejm-jw.na40075","title":"Invasive Pneumococcal Disease in the Immunocompromised","year":2016,"lang":"en","type":"article","venue":"Journal watch","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Pneumococcal disease; Medicine; Incidence (geometry); Disease; Pediatrics; Population; Streptococcus pneumoniae; Intensive care medicine; Internal medicine; Environmental health; Antibiotics","score_opus":0.01794829117778937,"score_gpt":0.2781755459408886,"score_spread":0.26022725476309927,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2416798083","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.87759376,0.000049506536,0.00003860542,0.1212911,0.00019375447,0.00018741452,0.0000019495774,0.000011540196,0.00063234486],"genre_scores_gemma":[0.99690104,0.00033155596,0.000008335868,0.0014111324,0.00037359714,0.000019238985,4.6252092e-7,0.000008895505,0.0009457426],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999193,0.00010946935,0.00021742866,0.00008888493,0.00019903379,0.0001921533],"domain_scores_gemma":[0.99937147,0.00014984784,0.000060336508,0.00018756813,0.000061225044,0.00016952578],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028389748,0.00008380881,0.0001296773,0.00006140443,0.00014981155,0.000028423134,0.000114829956,0.000038640595,0.00015895182],"category_scores_gemma":[0.00020255848,0.00003364048,0.00012757191,0.00013239778,0.000054358577,0.00009357046,0.000016478918,0.0002995628,0.0001298391],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016697128,0.0003418125,0.24258724,0.000017345043,0.000041136565,0.0011103004,0.00050010736,0.0000028895072,0.7488183,0.000070349175,0.0033171906,0.0030263816],"study_design_scores_gemma":[0.003028313,0.00023486273,0.9139247,0.0002946818,0.00006550884,0.0012279016,0.00014481862,0.0000037747582,0.0018272138,0.0014760225,0.07766088,0.000111333946],"about_ca_topic_score_codex":0.0000035186936,"about_ca_topic_score_gemma":0.00000706942,"teacher_disagreement_score":0.74699104,"about_ca_system_score_codex":0.00010477479,"about_ca_system_score_gemma":0.00020644367,"threshold_uncertainty_score":0.17404109},"labels":[],"label_agreement":null},{"id":"W2419659927","doi":"","title":"Streptococcus pneumoniae outbreak in a rural Regina community.","year":2006,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Regina Qu'Appelle Health Region","funders":"","keywords":"Streptococcus pneumoniae; Outbreak; Medicine; Environmental health; Microbiology; Virology; Biology; Antibiotics","score_opus":0.018388430168384172,"score_gpt":0.23889604336808412,"score_spread":0.22050761319969994,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2419659927","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.949373,0.000048127982,0.0000050306858,0.0034237304,0.00015437127,0.00086926,0.000006026884,0.00013249226,0.04598797],"genre_scores_gemma":[0.994973,0.0000058308715,0.0000033114745,0.00051467505,0.00015574235,0.0014241368,0.00001611982,0.000017956001,0.0028892308],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990387,0.00011801833,0.00020040602,0.000108821194,0.00014182551,0.00039223622],"domain_scores_gemma":[0.9993572,0.000059682883,0.000054291526,0.00037240997,0.000039522416,0.000116879164],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026376845,0.0001282558,0.00022370563,0.00020977596,0.00012551002,0.000021206544,0.00009032769,0.000094543466,0.000013591891],"category_scores_gemma":[0.000068292626,0.00010998291,0.000086047236,0.00032844103,0.000083784085,0.0000774505,0.000042686133,0.00048810744,0.00003684055],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017007907,0.0005065604,0.96669847,0.000039850165,0.000019769444,0.000073495845,0.00008014627,0.0000149179,0.0026562193,0.00035292207,0.0017670658,0.027773578],"study_design_scores_gemma":[0.001037199,0.000042556854,0.9576283,0.000023426528,0.000024582014,0.00005233723,0.00015166597,0.000011320217,0.00030198085,0.00021997733,0.040397666,0.00010898413],"about_ca_topic_score_codex":0.0006462926,"about_ca_topic_score_gemma":0.00081672065,"teacher_disagreement_score":0.04560001,"about_ca_system_score_codex":0.0001343261,"about_ca_system_score_gemma":0.000036534217,"threshold_uncertainty_score":0.4484973},"labels":[],"label_agreement":null},{"id":"W2428638391","doi":"10.1080/1120009x.2001.11782324","title":"Community Acquired Pneumonia (CAP): An Update","year":2001,"lang":"en","type":"review","venue":"Journal of Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto; University of Manitoba; Mount Sinai Hospital","funders":"","keywords":"Community-acquired pneumonia; Pneumonia; Pneumonia severity index; Intensive care medicine; Empiric treatment; Etiology; Medicine; Internal medicine; Antibiotics; Biology","score_opus":0.07410428960654857,"score_gpt":0.3937359718405865,"score_spread":0.31963168223403793,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2428638391","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0015574035,0.9954239,0.00005009168,0.0009870224,0.0005493892,0.00036146026,0.000011308836,0.000044530218,0.0010148702],"genre_scores_gemma":[0.00007209422,0.9957036,0.0001234139,0.0021981178,0.0012283829,0.000006271437,0.000019237994,0.00010559358,0.0005432877],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9974738,0.0005375942,0.0011752946,0.00014220245,0.00038282745,0.0002883085],"domain_scores_gemma":[0.9972445,0.00008952494,0.001299762,0.0006970277,0.00027998074,0.00038922383],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00079341186,0.00043321992,0.002409802,0.0004650585,0.00019964656,0.000051708583,0.00042950417,0.0004570479,0.00036558832],"category_scores_gemma":[0.00004619043,0.00028896288,0.0011663234,0.00048064743,0.000114515904,0.00019172845,0.000024433908,0.0014501633,0.000052141226],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042858683,0.0007685403,0.000044284017,0.0021922952,0.00069892046,0.00018590677,0.00011080363,3.9185568e-7,0.00035076556,0.000009756071,0.0021281594,0.99346733],"study_design_scores_gemma":[0.0010823216,0.000988883,0.00011728033,0.005964533,0.0009976429,0.0079413485,0.000025148358,0.0000010506586,0.000018068235,0.00007568352,0.9825485,0.00023956133],"about_ca_topic_score_codex":0.0000052985743,"about_ca_topic_score_gemma":0.000004652493,"teacher_disagreement_score":0.9932278,"about_ca_system_score_codex":0.0002187208,"about_ca_system_score_gemma":0.0006516091,"threshold_uncertainty_score":0.99995625},"labels":[],"label_agreement":null},{"id":"W2431173027","doi":"","title":"Severe acute respiratory syndrome-global alert.","year":2003,"lang":"en","type":"editorial","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Atypical pneumonia; Mainland China; Case fatality rate; Outbreak; China; Respiratory illness; Disease; Pediatrics; Environmental health; Family medicine; Pneumonia; Medical emergency; Population; Respiratory system; Virology; Internal medicine","score_opus":0.016094507803637133,"score_gpt":0.2636465584628506,"score_spread":0.24755205065921349,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2431173027","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.003348128,0.0006295701,0.0000073707306,0.00045519465,0.95129025,0.0017442765,0.00087902066,0.00034990406,0.041296296],"genre_scores_gemma":[0.0026180686,0.00029548508,0.000020787273,0.0029941013,0.9522732,0.0047666966,0.00037414735,0.00018834061,0.036469173],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9965085,0.00015350034,0.00056585437,0.00076894596,0.001068872,0.00093434093],"domain_scores_gemma":[0.9976999,0.00015321096,0.00025744992,0.0008888037,0.0003216597,0.00067897164],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0004286323,0.00056479976,0.0009273162,0.00021804667,0.0002034493,0.000070535236,0.00025790173,0.0017448,0.00012244532],"category_scores_gemma":[0.00088718644,0.00049790833,0.00045541005,0.0005421982,0.00016057353,0.0001150666,0.00008661815,0.001417146,0.00032884255],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004605277,0.0001540578,0.0015744619,0.00015922432,0.000742214,0.0012738338,0.0000053045405,7.80946e-7,0.000007762481,0.000013931701,0.991527,0.004495383],"study_design_scores_gemma":[0.0016130789,0.00015340986,0.024611663,0.00007517083,0.0009927223,0.0006525149,0.0000050617946,1.4888144e-7,0.000009258444,0.000039398128,0.97134435,0.000503222],"about_ca_topic_score_codex":0.000013497795,"about_ca_topic_score_gemma":0.0000146509165,"teacher_disagreement_score":0.0230372,"about_ca_system_score_codex":0.0008228526,"about_ca_system_score_gemma":0.00094869087,"threshold_uncertainty_score":0.9997473},"labels":[],"label_agreement":null},{"id":"W243890755","doi":"","title":"Long-term morbidity from severe pneumonia in early childhood in The Gambia, West Africa: a follow-up study.","year":2009,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"","keywords":"Medicine; Pneumonia; Spirometry; Pediatrics; Odds ratio; Cohort study; Lung disease; Observational study; Cohort; Respiratory disease; Lung; Internal medicine; Asthma","score_opus":0.029813260024597756,"score_gpt":0.2514628088601658,"score_spread":0.22164954883556806,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W243890755","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9924494,0.0001243087,0.0000012676835,0.0023692206,0.00028432676,0.0020814089,0.0000146747725,0.00006998818,0.0026054012],"genre_scores_gemma":[0.9977957,0.000017683959,0.0000017865922,0.000823423,0.00022378017,0.0008458491,0.000008752429,0.00001614713,0.00026688015],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982147,0.00019939689,0.00035347533,0.00036934894,0.00035205018,0.00051100284],"domain_scores_gemma":[0.9991366,0.00009542586,0.00007349023,0.00051427406,0.000030544947,0.0001496649],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043004507,0.00020489584,0.0003577345,0.0002109037,0.000094118404,0.000057849596,0.00022167574,0.00012159254,0.000022977852],"category_scores_gemma":[0.0001521856,0.00014727017,0.00011556781,0.00064090634,0.00003828348,0.000136951,0.00003432021,0.0005659859,0.000047403133],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003913,0.0019933642,0.97594416,0.000004304106,0.00003884148,0.00042510536,0.0049147923,0.00000223321,0.00021430862,0.0000037920663,0.000097976255,0.01632201],"study_design_scores_gemma":[0.0034597167,0.0002410776,0.9952898,0.000029668076,0.00008231218,0.000043004788,0.00033694532,0.0000012605166,0.000019270687,0.00009110746,0.00024171521,0.0001641027],"about_ca_topic_score_codex":0.000597911,"about_ca_topic_score_gemma":0.0033534078,"teacher_disagreement_score":0.019345675,"about_ca_system_score_codex":0.000118115124,"about_ca_system_score_gemma":0.000060500704,"threshold_uncertainty_score":0.60055035},"labels":[],"label_agreement":null},{"id":"W2439596981","doi":"10.1097/inf.0000000000001265","title":"Impact of Diarrhea on the Clinical Presentation and Outcome of Severe Pneumonia in Bangladeshi Children","year":2016,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Global Affairs Canada","funders":"","keywords":"Diarrhea; Medicine; Presentation (obstetrics); Pneumonia; Pediatrics; Acute diarrhea; Comorbidity; Chronic diarrhea; Metabolic acidosis; Intensive care medicine; Internal medicine; Surgery","score_opus":0.025540555409623626,"score_gpt":0.3498753262553112,"score_spread":0.32433477084568757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2439596981","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99747956,0.00010585615,0.000013265397,0.0016343984,0.0001774901,0.00036042198,0.000035491274,0.000012648537,0.0001808699],"genre_scores_gemma":[0.99843705,0.0007510821,0.0000012355537,0.00012101875,0.0006334069,0.000008354578,6.5450956e-7,0.000013354002,0.000033856802],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99845195,0.00037014033,0.00060994114,0.00012122015,0.0002617196,0.00018500087],"domain_scores_gemma":[0.9981432,0.0009115761,0.0003757085,0.00024493336,0.00011085715,0.00021375173],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00075990875,0.00013095568,0.00027378052,0.00021454411,0.00013100686,0.00001319733,0.00009117229,0.000066756045,0.00009110013],"category_scores_gemma":[0.001052879,0.0000515794,0.00031708492,0.0002840378,0.0001512289,0.00008234959,0.00003336536,0.00038873742,0.000008962556],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016646716,0.0003806049,0.9977777,0.000016305608,0.00010030574,0.000009141708,0.00005935996,0.000057761034,0.00026600543,0.00003718577,0.00021317368,0.00091596437],"study_design_scores_gemma":[0.0016879714,0.0006049628,0.99642694,0.00003540982,0.0003252112,0.0003296242,0.000009061539,0.000010411779,0.000005998658,0.0004919618,0.0000066441626,0.00006579959],"about_ca_topic_score_codex":0.00003807206,"about_ca_topic_score_gemma":0.000007398211,"teacher_disagreement_score":0.0015215043,"about_ca_system_score_codex":0.0000728604,"about_ca_system_score_gemma":0.0002533784,"threshold_uncertainty_score":0.2103347},"labels":[],"label_agreement":null},{"id":"W2443730312","doi":"10.1016/s1549-3741(04)30044-4","title":"Physician-Perceived Barriers to Adopting a Critical Pathway for Community-Acquired Pneumonia","year":2004,"lang":"en","type":"article","venue":"The Joint Commission Journal on Quality and Safety","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Health Economics; University of Alberta","funders":"","keywords":"Medicine; Psychological intervention; Community-acquired pneumonia; Family medicine; Clinical pathway; Nursing; Audit; Qualitative research; Pneumonia; Business","score_opus":0.09328583779881364,"score_gpt":0.37226357219141043,"score_spread":0.27897773439259677,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2443730312","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8572505,0.000045524164,0.0056919935,0.13397309,0.0003573321,0.00051544426,0.00003594446,0.000070893715,0.0020592918],"genre_scores_gemma":[0.97906655,0.00003702322,0.0005487453,0.019915022,0.00026082704,0.000013629295,0.0000029292376,0.000021103424,0.00013417721],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977866,0.00085883634,0.0006025678,0.00014030903,0.00029747182,0.00031423292],"domain_scores_gemma":[0.99766433,0.00072203344,0.00013336312,0.00037176837,0.00020501831,0.0009034651],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.002306682,0.0001954666,0.00043008896,0.0000914346,0.003154533,0.00006870503,0.00013524652,0.00009893586,0.00004185004],"category_scores_gemma":[0.0023895747,0.00011801751,0.00023624559,0.00015284492,0.00019149821,0.00009036833,0.00006809231,0.0008764397,0.000012313579],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0046888073,0.0016159911,0.00078246056,0.00047553575,0.0002913873,0.00007559036,0.020989615,0.0011805779,0.8832035,0.040224068,0.0008027022,0.04566978],"study_design_scores_gemma":[0.015205116,0.011143501,0.38402236,0.0056819585,0.0004670707,0.0021307357,0.032504942,0.0002790199,0.0109514715,0.029336318,0.5069296,0.0013479509],"about_ca_topic_score_codex":0.000015444035,"about_ca_topic_score_gemma":0.000004019379,"teacher_disagreement_score":0.872252,"about_ca_system_score_codex":0.00014200674,"about_ca_system_score_gemma":0.00023344994,"threshold_uncertainty_score":0.9981432},"labels":[],"label_agreement":null},{"id":"W2461299836","doi":"10.1080/21645515.2016.1202389","title":"A bivalent pneumococcal histidine triad protein D-choline-binding protein A vaccine elicits functional antibodies that passively protect mice from Streptococcus pneumoniae challenge","year":2016,"lang":"en","type":"article","venue":"Human Vaccines & Immunotherapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"Sanofi Pasteur; University of Alabama at Birmingham","keywords":"Streptococcus pneumoniae; Antibody; Serotype; Microbiology; Immune system; Biology; Pneumococcal conjugate vaccine; Pneumococcal infections; Immunoglobulin G; Pneumococcal vaccine; Immunology; Virology","score_opus":0.05770012597870115,"score_gpt":0.2939115387582467,"score_spread":0.23621141277954555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2461299836","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9812419,0.0013369676,0.00046039766,0.009815934,0.00043120515,0.0055507477,0.00018346624,0.00064756547,0.00033180913],"genre_scores_gemma":[0.9901673,0.000340206,0.00009839867,0.00030637588,0.0013062783,0.001818277,0.00008814443,0.00023230087,0.0056426893],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9954454,0.00029366082,0.0012740074,0.0011664754,0.0007780881,0.0010423702],"domain_scores_gemma":[0.9971061,0.00018730866,0.0007610882,0.0011655771,0.00046363767,0.00031630843],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004041601,0.0009999751,0.0012523239,0.00064227433,0.00086650223,0.00012450991,0.00043288898,0.0004884565,0.00090649095],"category_scores_gemma":[0.00013392585,0.0006868043,0.00057127845,0.00046429242,0.00012549064,0.0003870475,0.0001858158,0.0008127689,0.00026283634],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000772689,0.0010394582,0.015492255,0.00018817022,0.00084255997,0.00007241314,0.00021904705,0.0000020741086,0.972518,0.00024332342,0.000118070835,0.0084919315],"study_design_scores_gemma":[0.02971388,0.0042777113,0.3132187,0.005132547,0.0009950068,0.00017880116,0.00027992524,0.000057651876,0.5181989,0.0010450187,0.1246019,0.002299928],"about_ca_topic_score_codex":0.00009040238,"about_ca_topic_score_gemma":0.00011199194,"teacher_disagreement_score":0.4543191,"about_ca_system_score_codex":0.0005022362,"about_ca_system_score_gemma":0.00029282246,"threshold_uncertainty_score":0.9995583},"labels":[],"label_agreement":null},{"id":"W2464144841","doi":"10.1093/ofid/ofv133.1440","title":"Incidence of Invasive Pneumococcal Disease (IPD) Post Pneumococcal Conjugate Vaccines in Toronto/Peel, Canada, 2001–2015","year":2015,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumococcal disease; Incidence (geometry); Pneumococcal conjugate vaccine; Pediatrics; Streptococcus pneumoniae; Antibiotics; Microbiology","score_opus":0.01631940069305962,"score_gpt":0.3032627682479954,"score_spread":0.28694336755493577,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2464144841","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98063266,0.0008123021,0.0000111104555,0.0033859767,0.0007219409,0.0018445528,0.00044682677,0.00009484687,0.0120497765],"genre_scores_gemma":[0.996561,0.00011492962,0.0000068839267,0.002270104,0.00013204619,0.0002903365,0.00013848943,0.000056836612,0.0004293934],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9971764,0.00020459697,0.00074597815,0.0005883908,0.00054692605,0.0007376735],"domain_scores_gemma":[0.99640274,0.0002083573,0.00029704315,0.00071341934,0.0007128542,0.0016656114],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00024073652,0.0004297063,0.0008163106,0.00017301674,0.0001969579,0.00009611126,0.0004415156,0.00012667604,0.0005641213],"category_scores_gemma":[0.0016545692,0.00038047053,0.00018411096,0.00042749904,0.00016682218,0.00084157474,0.0004637402,0.0002581278,0.00003812749],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047580776,0.0010831952,0.9853269,0.00014068146,0.00011072202,0.0004908768,0.00007548521,0.00074174884,0.0035132458,0.00023975254,0.0075674565,0.00023415525],"study_design_scores_gemma":[0.0042141513,0.0010861233,0.9860167,0.0003869906,0.00030694384,0.00013969286,0.0011595624,0.00025735132,0.00035342085,0.00032793818,0.005200267,0.0005508689],"about_ca_topic_score_codex":0.51611954,"about_ca_topic_score_gemma":0.8934852,"teacher_disagreement_score":0.37736568,"about_ca_system_score_codex":0.0014747255,"about_ca_system_score_gemma":0.0077562407,"threshold_uncertainty_score":0.9998647},"labels":[],"label_agreement":null},{"id":"W2464329253","doi":"","title":"First-step GyrA mutations in Streptococcus pneumoniae with Changing Fluoroquinolone Prescription Patterns","year":2006,"lang":"en","type":"article","venue":"44th Annual Meeting","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Streptococcus pneumoniae; Medical prescription; Medicine; Microbiology; Genetics; Biology; Bacteria; Pharmacology","score_opus":0.007988343992536359,"score_gpt":0.23578908707777171,"score_spread":0.22780074308523535,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2464329253","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9942133,0.00008124516,0.00073815085,0.0010990952,0.00015223573,0.0006176738,0.000047177982,0.00019604173,0.002855105],"genre_scores_gemma":[0.99847376,0.000007424711,0.00021687223,0.0001786054,0.0003473323,0.00017335497,0.00005722373,0.000035342822,0.00051006675],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985103,0.00005217022,0.00035352958,0.00033003703,0.00024664123,0.0005072987],"domain_scores_gemma":[0.9993666,0.00006304343,0.00012473065,0.00021726273,0.00012550228,0.00010285638],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017861015,0.00020033086,0.00025239226,0.00043533766,0.00027307845,0.000035062883,0.00006327394,0.000108625485,0.000037435297],"category_scores_gemma":[0.00006386939,0.00017161696,0.00006543589,0.0005011477,0.000054600492,0.00021169729,0.0000357488,0.00028161716,0.000032654065],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003188221,0.000296743,0.97590435,0.00017889537,0.000032079686,0.00020898074,0.0015155588,0.0030322901,0.016342621,0.00014554287,0.000105202525,0.0022058347],"study_design_scores_gemma":[0.0022583788,0.0006505649,0.9768572,0.001237933,0.00011776552,0.00014300275,0.003773388,0.002808118,0.0025948929,0.00003490527,0.0091168955,0.0004069798],"about_ca_topic_score_codex":0.0006852115,"about_ca_topic_score_gemma":0.0022159924,"teacher_disagreement_score":0.0137477275,"about_ca_system_score_codex":0.00011850633,"about_ca_system_score_gemma":0.00006475389,"threshold_uncertainty_score":0.69983363},"labels":[],"label_agreement":null},{"id":"W2464999467","doi":"","title":"Short-course therapy of gemifloxacin versus moxifloxacin against murine pneumococcal pneumonia caused by a single-step ParC mutant","year":2007,"lang":"en","type":"article","venue":"45th Annual Meeting","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Gemifloxacin; Moxifloxacin; Pneumonia; Pneumococcal pneumonia; Mutant; Medicine; Microbiology; Virology; Streptococcus pneumoniae; Antibiotics; Biology; Internal medicine; Genetics; Gene","score_opus":0.025556107418972848,"score_gpt":0.29824916908767735,"score_spread":0.2726930616687045,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2464999467","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9905752,0.00048316937,0.00014318393,0.00055321906,0.0006839964,0.00067655277,0.000105807034,0.00024496703,0.0065338872],"genre_scores_gemma":[0.9984768,0.00015081758,0.00013081121,0.0004626898,0.0004774805,0.000027769605,0.000052645933,0.00008787018,0.00013314022],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9967415,0.00011875796,0.0009762079,0.0005810949,0.00063832954,0.000944123],"domain_scores_gemma":[0.9979433,0.00034762043,0.0002666741,0.00055027043,0.0003596153,0.000532559],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009331728,0.00046290274,0.0007239536,0.00026502524,0.0002563216,0.000026354133,0.0002005888,0.00030129403,0.000035495246],"category_scores_gemma":[0.00033492025,0.00039995537,0.00028569985,0.00062935293,0.00024695636,0.00016231468,0.000076451295,0.00058646646,0.000026982632],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00060528686,0.00088788214,0.04211651,0.00006247363,0.00019576645,0.00022905912,0.0006144378,0.00004345534,0.9310511,0.000014809881,0.00020483408,0.023974437],"study_design_scores_gemma":[0.01121917,0.0046034344,0.15153852,0.0007422714,0.0003250098,0.00013876776,0.004721799,0.0004926576,0.76381403,0.000011001372,0.06115544,0.0012379236],"about_ca_topic_score_codex":0.00006148955,"about_ca_topic_score_gemma":0.000073617375,"teacher_disagreement_score":0.16723703,"about_ca_system_score_codex":0.00016507613,"about_ca_system_score_gemma":0.00014698466,"threshold_uncertainty_score":0.9998452},"labels":[],"label_agreement":null},{"id":"W2467061483","doi":"","title":"Respiratory Fluoroquinolone-Resistant (RFQR) Invasive Pneumococcal Disease (IPD) in Toronto, Canada","year":2006,"lang":"en","type":"article","venue":"44th Annual Meeting","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Pneumococcal disease; Medicine; Streptococcus pneumoniae; Respiratory disease; Respiratory system; Disease; Intensive care medicine; Antibiotics; Internal medicine; Microbiology; Biology; Lung","score_opus":0.00797098463854131,"score_gpt":0.24501193003363786,"score_spread":0.23704094539509654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2467061483","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9772371,0.0015904871,0.0000026749124,0.0009307795,0.00046729963,0.0004263474,0.00010500787,0.00010041126,0.019139884],"genre_scores_gemma":[0.9970093,0.000015342823,0.000030059246,0.0017465283,0.0005909314,0.000071423216,0.000026953789,0.000037878544,0.0004716074],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99781966,0.00013931721,0.0005632543,0.0004376995,0.0004196556,0.00062043587],"domain_scores_gemma":[0.99877584,0.00015001763,0.00013672007,0.0003592551,0.00016532921,0.00041283036],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002522658,0.0002635149,0.00036346877,0.0001042711,0.0002218181,0.000023773253,0.00012454735,0.00011328336,0.000111153975],"category_scores_gemma":[0.0005165389,0.00024382994,0.00010402634,0.00023809004,0.00008751616,0.00017855973,0.00006706261,0.00029549265,0.000016508628],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00051228347,0.00057962193,0.66657317,0.00042058292,0.00006919547,0.0037259639,0.0004038554,0.0003598326,0.30996588,0.00080776704,0.014706114,0.0018757571],"study_design_scores_gemma":[0.0013960358,0.0002435321,0.92084837,0.00044342934,0.00007271263,0.000022617975,0.0014654435,0.000033930333,0.0030212805,0.000053150616,0.07199853,0.0004009849],"about_ca_topic_score_codex":0.48899606,"about_ca_topic_score_gemma":0.908425,"teacher_disagreement_score":0.41942888,"about_ca_system_score_codex":0.0011914374,"about_ca_system_score_gemma":0.0020052255,"threshold_uncertainty_score":0.99430966},"labels":[],"label_agreement":null},{"id":"W2467814878","doi":"","title":"Impact of Antibiotic Therapy on Outcome of Bacteremic Pneumococcal Pneumonia in Toronto, Canada","year":2006,"lang":"en","type":"article","venue":"44th Annual Meeting","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Pneumococcal pneumonia; Pneumonia; Medicine; Antibiotic therapy; Antibiotics; Streptococcus pneumoniae; Intensive care medicine; Internal medicine; Microbiology; Biology","score_opus":0.011842393722650339,"score_gpt":0.30263763532951166,"score_spread":0.2907952416068613,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2467814878","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9917386,0.00013316808,5.8972023e-7,0.000103569306,0.00014909338,0.00023011745,0.00005813503,0.000019039162,0.0075676553],"genre_scores_gemma":[0.9996713,0.000016694516,0.000011818265,0.00008368963,0.00010380392,0.0000021772448,0.000008921226,0.000020047632,0.000081580605],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99862903,0.00006481632,0.00056880404,0.00019054317,0.00024031368,0.00030649648],"domain_scores_gemma":[0.9992669,0.00011132624,0.00020132678,0.00022043755,0.00010859151,0.00009140397],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018137887,0.00017488471,0.00045531368,0.0000971,0.000037849437,0.000003869506,0.00007924328,0.000089590816,0.000060317612],"category_scores_gemma":[0.00009616943,0.00013169786,0.00014675781,0.00018104896,0.00004703526,0.00006600241,0.00001575781,0.00017953246,0.0000017223441],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005521466,0.00018194581,0.6815866,0.000036107773,0.000021914288,0.000018936682,0.000069678776,0.00014330211,0.3171286,0.0000139156655,0.000035631216,0.0007081166],"study_design_scores_gemma":[0.0009107359,0.0007121856,0.989673,0.00019744202,0.0000140696675,0.000021002037,0.00015715671,0.00003540121,0.007947778,0.0000033643398,0.00021472575,0.0001131183],"about_ca_topic_score_codex":0.71737117,"about_ca_topic_score_gemma":0.44646144,"teacher_disagreement_score":0.30918083,"about_ca_system_score_codex":0.0005116869,"about_ca_system_score_gemma":0.0004005449,"threshold_uncertainty_score":0.56363916},"labels":[],"label_agreement":null},{"id":"W2468906735","doi":"10.1017/cem.2016.105","title":"LO068: Physician adherence to Antimicrobial Guidelines for Community Acquired Pneumonia in the St. Michael’s Hospital Emergency Department","year":2016,"lang":"en","type":"article","venue":"Canadian Journal of Emergency Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Medicine; Azithromycin; Community-acquired pneumonia; Emergency department; Pneumonia; Amoxicillin; Medical prescription; Clavulanic acid; Antimicrobial stewardship; Internal medicine; Antimicrobial; Retrospective cohort study; Emergency medicine; Pediatrics; Antibiotics; Antibiotic resistance","score_opus":0.1316800551678353,"score_gpt":0.3830316259329007,"score_spread":0.2513515707650654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2468906735","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91295505,0.00042206765,0.00040047182,0.07703773,0.007791614,0.00081828615,0.00011634615,0.00000922894,0.00044922813],"genre_scores_gemma":[0.9935285,0.00035662833,0.00006772577,0.0034430404,0.0021267713,0.000040785468,0.0000121715,0.000030548326,0.00039386732],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99751157,0.00018916094,0.0012975449,0.00017530497,0.0002903049,0.00053611683],"domain_scores_gemma":[0.997157,0.00008835237,0.0003556862,0.0004392885,0.0012089933,0.00075071194],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011675677,0.00025664343,0.0005290494,0.0004168647,0.0003337724,0.0000045610336,0.00047349234,0.00009368292,0.0006474604],"category_scores_gemma":[0.0013994336,0.00013817231,0.00024039975,0.0005683672,0.00012984866,0.00013180483,0.000017718325,0.0002581799,0.000019577858],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001176562,0.00037390177,0.090218216,0.00014029522,0.00025491935,0.0001588404,0.006575236,0.000009751301,0.1728068,0.0001567349,0.71783876,0.011348877],"study_design_scores_gemma":[0.005145504,0.012735888,0.29949188,0.0024865465,0.0005933163,0.00017447444,0.0056465706,0.00001380743,0.0011129885,0.00080420985,0.6711139,0.00068088],"about_ca_topic_score_codex":0.002908566,"about_ca_topic_score_gemma":0.043941945,"teacher_disagreement_score":0.20927367,"about_ca_system_score_codex":0.00019451267,"about_ca_system_score_gemma":0.00073179684,"threshold_uncertainty_score":0.97350365},"labels":[],"label_agreement":null},{"id":"W2474036154","doi":"","title":"Adherence to antibiotic guidelines for pneumonia in chronic-care facilities in Ontario.","year":2001,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University; McMaster University Medical Centre","funders":"","keywords":"Medicine; Pneumonia; Antibiotics; Odds ratio; Prospective cohort study; Confidence interval; Medical prescription; Internal medicine; Cohort; Cohort study; Intensive care medicine; Nursing","score_opus":0.12123725644389875,"score_gpt":0.331473778923772,"score_spread":0.21023652247987323,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2474036154","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9927974,0.00023259886,0.0000326652,0.0019515117,0.00026625145,0.001793306,0.000011994832,0.000045622357,0.002868667],"genre_scores_gemma":[0.99171674,0.00002707399,0.000069607544,0.00071755156,0.000112122114,0.0011335722,0.00000920077,0.000012505531,0.0062015983],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988247,0.000016553762,0.000345928,0.0002539906,0.000119189455,0.00043960256],"domain_scores_gemma":[0.99943143,0.000035565055,0.000030983072,0.00020382009,0.00015751836,0.00014070139],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016340101,0.00012992519,0.0002584012,0.00024967044,0.00004047383,0.000016477854,0.000076331446,0.000086011605,0.000032324027],"category_scores_gemma":[0.00032059976,0.000113381124,0.00006846917,0.000265915,0.00002876799,0.000070108166,0.000026223403,0.0001576389,0.00002327917],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008699251,0.00009216205,0.90189576,0.00016561129,0.000016254211,0.0000630421,0.0013357727,0.00031686854,0.0034976273,0.000032484382,0.0005702512,0.091927156],"study_design_scores_gemma":[0.0010395969,0.00019947885,0.84320295,0.00008477313,0.000010600228,0.000021178015,0.00050854025,0.000024105158,0.0003624756,0.000022571083,0.15440516,0.00011858892],"about_ca_topic_score_codex":0.01544077,"about_ca_topic_score_gemma":0.4940037,"teacher_disagreement_score":0.47856292,"about_ca_system_score_codex":0.0008963661,"about_ca_system_score_gemma":0.00030352362,"threshold_uncertainty_score":0.9911155},"labels":[],"label_agreement":null},{"id":"W2515884628","doi":"10.1186/s12879-016-1693-x","title":"Pneumonia hospitalisations in Scotland following the introduction of pneumococcal conjugate vaccination in young children","year":2016,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Global Health Research","funders":"","keywords":"Medical microbiology; Pneumonia; Medicine; Tropical medicine; Vaccination; Parasitology; Pneumococcal conjugate vaccine; Pneumococcal infections; Streptococcus pneumoniae; Pediatrics; Pneumococcal pneumonia; Intensive care medicine; Immunology; Internal medicine; Microbiology; Antibiotics; Biology; Pathology","score_opus":0.006034189201490083,"score_gpt":0.24816471342854546,"score_spread":0.2421305242270554,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2515884628","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970778,0.0000905542,0.00016597043,0.0009740476,0.0004148765,0.0007504376,0.000021610607,0.00008166564,0.00042300308],"genre_scores_gemma":[0.99934953,0.00005046454,0.0000027015512,0.00004323387,0.0003073051,0.00013393577,0.000022373688,0.0000202086,0.00007023777],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987448,0.00015024199,0.00040703433,0.00027272882,0.00019550345,0.00022971733],"domain_scores_gemma":[0.999285,0.00013807382,0.00012685564,0.00029490938,0.00007774597,0.000077420686],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020290187,0.0001570117,0.0002658353,0.00037297304,0.00011597373,0.000019759185,0.00006730334,0.00007938578,0.000051274867],"category_scores_gemma":[0.0005192845,0.00009701351,0.00017133652,0.0005328641,0.000069006586,0.00025144793,0.000029450523,0.0001262692,0.000018599701],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026352383,0.0003599818,0.97557503,0.00002640125,0.00003846942,0.000003817081,0.00009390479,0.00011289828,0.022813207,0.00028411415,0.000034745917,0.0006310834],"study_design_scores_gemma":[0.002342065,0.00017938939,0.9959108,0.00009456265,0.00011213647,0.000046041452,0.000042728712,0.00003772125,0.00068166194,0.00036809657,0.000059915576,0.0001248662],"about_ca_topic_score_codex":0.00019979489,"about_ca_topic_score_gemma":0.0017445609,"teacher_disagreement_score":0.022131545,"about_ca_system_score_codex":0.00018522433,"about_ca_system_score_gemma":0.00015125616,"threshold_uncertainty_score":0.39560962},"labels":[],"label_agreement":null},{"id":"W2521865116","doi":"10.1007/s10096-016-2779-5","title":"Improved survival among ICU-hospitalized patients with community-acquired pneumonia by unidentified organisms: a multicenter case–control study","year":2016,"lang":"en","type":"article","venue":"European Journal of Clinical Microbiology & Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital","funders":"European Society of Intensive Care Medicine; Infectious Diseases Society of America","keywords":"Medicine; Incidence (geometry); Pneumonia; Internal medicine; Odds ratio; Antibiotics; Intensive care; Medical prescription; Medical microbiology; Community-acquired pneumonia; Retrospective cohort study; Multivariate analysis; Pediatrics; Intensive care medicine; Immunology","score_opus":0.013365965033877283,"score_gpt":0.28619545891179143,"score_spread":0.27282949387791416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2521865116","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966507,0.000046099092,0.0003747657,0.0001748004,0.0013457106,0.0008653036,0.00033778098,0.00010493893,0.00009993073],"genre_scores_gemma":[0.99871945,0.000022889346,0.000007398182,0.00074324576,0.0002875955,0.000006744046,0.000018877156,0.000084456515,0.00010934673],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99078673,0.006461229,0.0018564732,0.00035156356,0.00012862482,0.0004153672],"domain_scores_gemma":[0.9953586,0.0012368524,0.0013466706,0.0005677655,0.0009060052,0.00058410293],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017510043,0.0003910102,0.001168402,0.00018883869,0.00042263596,0.000052857216,0.00027897814,0.00011431922,0.00014620899],"category_scores_gemma":[0.0016024682,0.0002195408,0.00051529,0.00019139951,0.0008089259,0.00022495573,0.00012344634,0.0006644492,0.000052601048],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012887403,0.007652421,0.9433106,0.00002032444,0.0018534594,0.0013520737,0.00011954397,8.280772e-7,0.042502306,3.5470973e-7,0.0002636716,0.0016356715],"study_design_scores_gemma":[0.036662567,0.013656609,0.9457549,0.0001963128,0.0016984507,0.00063737,0.00020615928,8.5888576e-7,0.00007048046,0.0000018971955,0.0008382251,0.00027616002],"about_ca_topic_score_codex":0.000021190566,"about_ca_topic_score_gemma":0.000059580663,"teacher_disagreement_score":0.042431824,"about_ca_system_score_codex":0.000082737926,"about_ca_system_score_gemma":0.00015288964,"threshold_uncertainty_score":0.8952614},"labels":[],"label_agreement":null},{"id":"W2523264868","doi":"10.1503/cmaj.151163","title":"The added value of C-reactive protein measurement in diagnosing pneumonia in primary care: a meta-analysis of individual patient data","year":2016,"lang":"en","type":"article","venue":"Canadian Medical Association Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Primary care; Pneumonia; Meta-analysis; Value (mathematics); Medicine; Computer science; Data science; Intensive care medicine; Internal medicine; Family medicine; Machine learning","score_opus":0.050272668477316935,"score_gpt":0.27560944111208957,"score_spread":0.22533677263477264,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2523264868","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9739644,0.00096497446,0.000027166858,0.023703877,0.00014693289,0.00047587542,0.0002898088,0.000003998978,0.00042297656],"genre_scores_gemma":[0.99886686,0.000044563574,0.000021353957,0.0009433307,0.00006042562,0.000031774092,0.0000149895495,0.000007673539,0.000009049728],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99601513,0.0005584378,0.0008290036,0.00017054747,0.002122883,0.00030398543],"domain_scores_gemma":[0.9978035,0.0004149645,0.00052831747,0.00027305566,0.00053207076,0.00044807594],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0037770453,0.0001069906,0.0006255511,0.0006008768,0.000099164055,0.000017142376,0.0002704977,0.0001832191,0.0001378132],"category_scores_gemma":[0.0041672084,0.000059131697,0.00026354237,0.0007924019,0.0000703717,0.00011059937,0.00004352974,0.00048964506,0.0000019181239],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007425951,0.0005778311,0.7989188,0.00006899965,0.076740146,0.00043003738,0.004300506,0.000047504684,0.011901967,0.00015019256,0.0017751537,0.10501463],"study_design_scores_gemma":[0.0016578574,0.00021554997,0.96494025,0.00025409646,0.018022893,0.000026865911,0.0010115997,0.00004941056,0.0006220594,0.000038230508,0.013020185,0.00014101264],"about_ca_topic_score_codex":0.0026044003,"about_ca_topic_score_gemma":0.094294876,"teacher_disagreement_score":0.16602147,"about_ca_system_score_codex":0.0020884546,"about_ca_system_score_gemma":0.0044683125,"threshold_uncertainty_score":0.9222319},"labels":[],"label_agreement":null},{"id":"W2524089984","doi":"10.9778/cmajo.20160035","title":"The epidemiology of invasive pneumococcal disease in older adults from 2007 to 2014 in Ontario, Canada: a population-based study","year":2016,"lang":"en","type":"article","venue":"CMAJ Open","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Public Health Ontario","funders":"","keywords":"Herd immunity; Medicine; Incidence (geometry); Epidemiology; Population; Poisson regression; Pneumococcal disease; Vaccination; Serotype; Pneumococcal conjugate vaccine; Pneumococcal infections; Pneumococcal polysaccharide vaccine; Disease surveillance; Pediatrics; Disease; Environmental health; Streptococcus pneumoniae; Internal medicine; Immunology; Biology","score_opus":0.026952148900174454,"score_gpt":0.30608976861515796,"score_spread":0.2791376197149835,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2524089984","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9927349,0.000028537619,0.000008502366,0.0049974364,0.00019550847,0.0018934206,0.000031979875,0.000004219945,0.00010551085],"genre_scores_gemma":[0.9979985,0.0000014663233,0.000009067296,0.0014096367,0.000031473268,0.00026015102,0.000016537568,0.000008829139,0.0002643772],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987214,0.00026220662,0.00043478783,0.00025817062,0.000105495754,0.00021791189],"domain_scores_gemma":[0.99811924,0.0011448892,0.00009379748,0.00037896438,0.000056925397,0.00020621128],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038806495,0.00010462356,0.00034439628,0.000078217185,0.000056192173,0.0000038452076,0.00020004742,0.00004428194,0.00033723633],"category_scores_gemma":[0.0012108432,0.000057688525,0.000033426837,0.00011219881,0.00002501177,0.00004536187,0.00008911685,0.0001287326,0.000018099887],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033455362,0.00025311788,0.9976715,0.000004782469,0.000016396389,0.000046147703,0.00021264053,0.00007114113,0.00014524063,0.000010944319,0.0008392721,0.00039430094],"study_design_scores_gemma":[0.0024914683,0.00014234037,0.9957766,0.00028621583,0.000019200521,3.1723224e-7,0.00015670188,0.000009136051,0.000015946413,0.000054849505,0.0009694704,0.00007776923],"about_ca_topic_score_codex":0.9932021,"about_ca_topic_score_gemma":0.9996961,"teacher_disagreement_score":0.0064940085,"about_ca_system_score_codex":0.0005296441,"about_ca_system_score_gemma":0.002020676,"threshold_uncertainty_score":0.36925012},"labels":[],"label_agreement":null},{"id":"W2528813221","doi":"10.1186/s12931-016-0444-2","title":"Erratum to: Risk factors for mortality in patients admitted to intensive care units with pneumonia","year":2016,"lang":"en","type":"erratum","venue":"Respiratory Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Mount Sinai Hospital; University Health Network; Hamilton Health Sciences; University of Toronto; Queen's University; McMaster University; St. Michael's Hospital; University of British Columbia; St. Joseph’s Healthcare Hamilton","funders":"","keywords":"Pneumonia; Medicine; Intensive care medicine; Intensive care; Intensive care unit; Emergency medicine; Internal medicine","score_opus":0.11046177952723402,"score_gpt":0.39997430947961965,"score_spread":0.28951252995238563,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2528813221","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97846794,0.0002746896,0.000023372993,0.0004966841,0.005050401,0.0075733634,0.0021400538,0.00015107077,0.00582244],"genre_scores_gemma":[0.9304414,0.00013064864,0.000021642638,0.0048586754,0.0030265665,0.0034239772,0.0010944995,0.0007099579,0.05629264],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9925538,0.0009088715,0.00090002216,0.0016326935,0.0021691779,0.0018354439],"domain_scores_gemma":[0.98191893,0.0005822597,0.0002511775,0.0017583137,0.013907728,0.0015815849],"candidate_categories":["metaresearch","metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0011496125,0.0008259244,0.0014143124,0.002895175,0.0006180276,0.00011060128,0.0006364069,0.0012106148,0.000058838938],"category_scores_gemma":[0.009355581,0.0005692931,0.0002474422,0.0033057863,0.00032361914,0.0001474919,0.0003994403,0.0036805794,0.0002501562],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00073310157,0.00015020686,0.60075545,0.0005635268,0.0002715796,0.000093649476,0.001864532,0.000007703262,0.0009061265,0.000005967609,0.39363608,0.0010121111],"study_design_scores_gemma":[0.0017606817,0.006041204,0.45211262,0.0015513222,0.00010507236,0.0000015104829,0.0018908582,0.0000015605114,0.00030924665,0.000009484687,0.5357206,0.0004958729],"about_ca_topic_score_codex":0.00035131985,"about_ca_topic_score_gemma":0.0021382002,"teacher_disagreement_score":0.14864281,"about_ca_system_score_codex":0.0017712804,"about_ca_system_score_gemma":0.004631301,"threshold_uncertainty_score":0.99967587},"labels":[],"label_agreement":null},{"id":"W2529063936","doi":"","title":"Corticothérapie par voie générale et pneumonie acquise en communauté : illusion de l’évidence","year":2016,"lang":"fr","type":"article","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Medicine; Humanities; Philosophy","score_opus":0.014695456630983136,"score_gpt":0.2944813609038219,"score_spread":0.2797859042728387,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2529063936","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8415386,0.0050263344,0.0046505993,0.118924834,0.003655402,0.00067815854,0.00006205902,0.000381824,0.025082175],"genre_scores_gemma":[0.94749075,0.007990884,0.0002163372,0.0083764065,0.00078924047,0.0000558886,0.00000537637,0.000067623376,0.035007484],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9967609,0.0006361527,0.0006436542,0.00047978212,0.00041067763,0.0010688013],"domain_scores_gemma":[0.9964434,0.0014839055,0.00017913118,0.0009991437,0.00017946973,0.0007149714],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0008469383,0.00039134343,0.0005200735,0.0001899586,0.00041049474,0.000055692286,0.00035299963,0.00047133022,0.0048028864],"category_scores_gemma":[0.0009839986,0.00027891016,0.00028625168,0.0003483506,0.0006561781,0.00046379096,0.00031781706,0.0005270353,0.0032830744],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000622203,0.0009334591,0.28248703,0.00016547731,0.00018319515,0.00040330333,0.0012843768,0.00002083261,0.66131663,0.0044190814,0.0068227397,0.041901667],"study_design_scores_gemma":[0.003344153,0.0014048347,0.7411927,0.004431442,0.00055898214,0.0010540639,0.0004576505,0.0005777221,0.018410172,0.0028438508,0.22493874,0.0007856901],"about_ca_topic_score_codex":0.00041818083,"about_ca_topic_score_gemma":0.00034569562,"teacher_disagreement_score":0.6429064,"about_ca_system_score_codex":0.0004893764,"about_ca_system_score_gemma":0.0006528649,"threshold_uncertainty_score":0.9999663},"labels":[],"label_agreement":null},{"id":"W2540925660","doi":"10.1093/cid/ciw609","title":"Something New for Community-Acquired Pneumonia?","year":2016,"lang":"en","type":"letter","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Juravinski Hospital; McMaster University","funders":"","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Intensive care medicine; Internal medicine","score_opus":0.10982942655860564,"score_gpt":0.4104481873111038,"score_spread":0.30061876075249816,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2540925660","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.017490571,0.00063751923,0.0023359978,0.9617346,0.008038908,0.002773222,0.00089791755,0.0017465136,0.0043447777],"genre_scores_gemma":[0.010647972,0.00036060397,0.00001871169,0.9392258,0.036063254,0.00033194572,0.0005689173,0.00023552487,0.012547268],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99607444,0.00085737224,0.0012593193,0.0006617994,0.00036517665,0.0007819093],"domain_scores_gemma":[0.9910875,0.0059616533,0.00053282833,0.0013626926,0.00034243034,0.00071289623],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0006000007,0.00060586585,0.0015444151,0.00035001672,0.0007696568,0.00010657278,0.0003297547,0.0017647638,0.000294987],"category_scores_gemma":[0.004298455,0.00045213182,0.0018855587,0.00024112107,0.0005529621,0.00014808617,0.00017026279,0.0027550985,0.00041417716],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034887253,0.0004886943,0.038617417,0.00062399416,0.0007376742,0.00014066295,0.000025149915,6.4202334e-7,0.00021012922,0.000024549377,0.9434388,0.015657393],"study_design_scores_gemma":[0.0030803606,0.0017349608,0.02000042,0.00069982064,0.0017322529,0.000050031755,0.000009150726,0.0000050549925,0.000010988447,0.0037827927,0.9683483,0.00054581213],"about_ca_topic_score_codex":0.00004605498,"about_ca_topic_score_gemma":0.000016480422,"teacher_disagreement_score":0.028024347,"about_ca_system_score_codex":0.00021103102,"about_ca_system_score_gemma":0.001186046,"threshold_uncertainty_score":0.99979305},"labels":[],"label_agreement":null},{"id":"W2547971545","doi":"10.1038/nrdp.2016.74","title":"Community-acquired bacterial meningitis","year":2016,"lang":"en","type":"review","venue":"Nature Reviews Disease Primers","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":322,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Neisseria meningitidis; Streptococcus pneumoniae; Meningitis; Medicine; Vaccination; Haemophilus influenzae; Antibiotics; Meninges; Immunology; Intensive care medicine; Microbiology; Biology; Pediatrics; Bacteria; Pathology","score_opus":0.05873073947885575,"score_gpt":0.3968591462985461,"score_spread":0.3381284068196903,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2547971545","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000005042326,0.99192345,0.00000576286,0.00029063362,0.0016287739,0.003037666,0.0003222695,0.00018299697,0.0026034296],"genre_scores_gemma":[0.000004352592,0.9951845,0.000048139293,0.00069861,0.0012419176,0.0005385608,0.00074914674,0.00013674656,0.0013980469],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99586207,0.0016629663,0.0010943649,0.00052414136,0.00035766754,0.00049880263],"domain_scores_gemma":[0.9964691,0.00020639483,0.0006824808,0.0015825662,0.00011242725,0.0009470607],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0006644105,0.0008353864,0.0035427334,0.00034648788,0.0003705421,0.000050307703,0.000426443,0.0010181341,0.0010755651],"category_scores_gemma":[0.0009350222,0.00049265876,0.0024305477,0.00051318726,0.0001976824,0.000116226736,0.0001765926,0.0019561935,0.0013882302],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021144002,0.00017223792,0.000006007115,0.0356782,0.00038816908,0.00006936402,0.000009972002,1.5499022e-9,0.000030902378,0.000049663875,0.012170982,0.9514034],"study_design_scores_gemma":[0.0004093975,0.0000706235,0.00003182865,0.07235961,0.0049936506,0.00011028081,0.0000014914183,3.391759e-8,9.993573e-7,0.000010443544,0.92153555,0.00047611733],"about_ca_topic_score_codex":0.0000025307904,"about_ca_topic_score_gemma":9.825364e-7,"teacher_disagreement_score":0.95092726,"about_ca_system_score_codex":0.00038093887,"about_ca_system_score_gemma":0.0011292538,"threshold_uncertainty_score":0.9998376},"labels":[],"label_agreement":null},{"id":"W2548002637","doi":"10.1016/j.vaccine.2016.10.061","title":"In vivo screen of genetically conserved Streptococcus pneumoniae proteins for protective immunogenicity","year":2016,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer","keywords":"Biology; Immunogenicity; Serotype; Streptococcus pneumoniae; Antigen; Virology; Microbiology; Pneumococcal infections; Genetics","score_opus":0.01705108054909676,"score_gpt":0.2780026145318896,"score_spread":0.26095153398279286,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2548002637","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9892735,0.000050578525,0.0023971766,0.0041432986,0.00006374094,0.00368044,0.00010985483,0.000044571,0.00023685866],"genre_scores_gemma":[0.998116,0.000014969794,0.00025871999,0.00020376613,0.000096964046,0.00075293507,0.0000016168153,0.0000240857,0.000530924],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988772,0.000052458054,0.0004106744,0.00026104963,0.00012611701,0.00027249512],"domain_scores_gemma":[0.99908894,0.000112817244,0.00012131903,0.00034077832,0.00023470249,0.00010141178],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019662952,0.00015242813,0.00038756256,0.00016510603,0.000048459446,0.0000035440542,0.000089590394,0.00012114281,0.00022918542],"category_scores_gemma":[0.00032866045,0.00009606856,0.00013922321,0.00022447722,0.000031169304,0.00006264907,0.000039965573,0.00010389699,0.000012516488],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029404004,0.00024138833,0.056802977,0.00006349205,0.00007884367,0.0000083910445,0.000050650706,0.0000013164864,0.94056654,0.00016652558,0.000113862,0.0016119615],"study_design_scores_gemma":[0.006605199,0.0019242878,0.2696105,0.00028604607,0.00007244027,0.000025698202,0.000025206182,0.000030166,0.7139505,0.00065099186,0.006650282,0.00016870123],"about_ca_topic_score_codex":0.00010575168,"about_ca_topic_score_gemma":0.00029402765,"teacher_disagreement_score":0.22661605,"about_ca_system_score_codex":0.000077337005,"about_ca_system_score_gemma":0.00021779127,"threshold_uncertainty_score":0.3917562},"labels":[],"label_agreement":null},{"id":"W2549669628","doi":"","title":"THE ECONOMIC BURDEN OF INVASIVE PNEUMOCOCCAL DISEASE IN ONTARIO, CANADA: A POPULATION-BASED STUDY","year":2016,"lang":"en","type":"article","venue":"38th Annual North American Meeting of the Society for Medical Decision Making","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Pneumococcal disease; Population; Burden of disease; Medicine; Economic growth; Environmental health; Development economics; Geography; Streptococcus pneumoniae; Economics; Biology","score_opus":0.008941659862423094,"score_gpt":0.2725755134488076,"score_spread":0.2636338535863845,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2549669628","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99644715,0.000026000793,0.00012522686,0.0023362082,0.0002564637,0.0007195238,0.00006508372,0.000010628653,0.000013691548],"genre_scores_gemma":[0.9991981,0.0000056383487,0.00013475817,0.0004835828,0.00008055788,0.0000494456,0.0000032706073,0.000016921198,0.000027735057],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.997866,0.000104489474,0.0007300708,0.00026516896,0.0007292355,0.00030506766],"domain_scores_gemma":[0.9953791,0.0033392385,0.00050241215,0.0003937985,0.0001487792,0.00023670853],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00071196625,0.0001540105,0.00041122985,0.00004093371,0.00032377816,0.000008567345,0.00033985413,0.00004156287,0.00002386222],"category_scores_gemma":[0.0039045708,0.000076020566,0.0005139457,0.0002470936,0.0003648005,0.00003508407,0.000112928334,0.00023138429,5.3902056e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020332307,0.000074363306,0.984586,0.000020543699,0.00007981694,0.0000044687963,0.00044569222,0.001692108,0.000042351912,0.000005276753,0.00026037527,0.012585685],"study_design_scores_gemma":[0.0011418753,0.00023356994,0.9945264,0.0005542241,0.00009846341,0.0000014561887,0.0013279985,0.0006919316,0.000008048381,0.000042805514,0.0012763082,0.00009691192],"about_ca_topic_score_codex":0.5219075,"about_ca_topic_score_gemma":0.95444286,"teacher_disagreement_score":0.43253532,"about_ca_system_score_codex":0.0007431806,"about_ca_system_score_gemma":0.006091875,"threshold_uncertainty_score":0.99954265},"labels":[],"label_agreement":null},{"id":"W2550706064","doi":"10.1093/ofid/ofw172.1464","title":"Antibiotic Use for Children with Pneumonia: Sustained Adoption of National Guidelines at United States Children's Hospitals","year":2016,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Medicine; Pneumonia; Antibiotics; Pediatrics; Family medicine; Intensive care medicine; Internal medicine; Microbiology","score_opus":0.01684899586496006,"score_gpt":0.297334125758241,"score_spread":0.2804851298932809,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2550706064","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99242866,0.00005186,0.00042482826,0.0030736455,0.000083512714,0.0022136595,0.0013976638,0.00013862562,0.00018756973],"genre_scores_gemma":[0.9964021,0.00015869076,0.00006105583,0.0011218876,0.00008843748,0.000111636204,0.0011938411,0.000055467885,0.0008069091],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99844587,0.000048849994,0.00043624555,0.00038330135,0.00032223284,0.00036351522],"domain_scores_gemma":[0.99767745,0.000173095,0.00028671132,0.00030697603,0.001333717,0.0002220765],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001239919,0.00026876677,0.0004036513,0.00035051993,0.0003491133,0.00007837242,0.00014814778,0.00009549796,0.000058047244],"category_scores_gemma":[0.0005751972,0.0001658506,0.00017482926,0.00042952778,0.00020012408,0.0005082904,0.00014223975,0.000057969162,0.000019670855],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002370257,0.00049802824,0.9883525,0.000035498877,0.0004905112,0.0000026388254,0.000012869594,0.00022345371,0.0023151923,0.0006993126,0.00640088,0.00073213555],"study_design_scores_gemma":[0.004907,0.0017006376,0.98905766,0.00026907935,0.00036011115,0.00011751523,0.000040981042,0.00003850381,0.0009960221,0.0003840263,0.0018405535,0.00028792833],"about_ca_topic_score_codex":0.00017582279,"about_ca_topic_score_gemma":0.00011348961,"teacher_disagreement_score":0.004669974,"about_ca_system_score_codex":0.000233786,"about_ca_system_score_gemma":0.000293083,"threshold_uncertainty_score":0.67631906},"labels":[],"label_agreement":null},{"id":"W2551825447","doi":"10.1136/bmj.i6041","title":"Proton pump inhibitors and community acquired pneumonia","year":2016,"lang":"en","type":"letter","venue":"BMJ","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Jewish General Hospital","funders":"","keywords":"Pneumonia; Community-acquired pneumonia; Medicine; Proton; Intensive care medicine; Internal medicine; Physics; Nuclear physics","score_opus":0.03299743709953138,"score_gpt":0.30869407669259646,"score_spread":0.27569663959306506,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2551825447","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.08042374,0.00004488455,0.0000049731393,0.90688187,0.00073223474,0.0023204926,0.00005022374,0.00018568776,0.009355876],"genre_scores_gemma":[0.032222684,0.00008216485,0.0000179742,0.93265545,0.015886145,0.0010700612,0.0001302982,0.00013377177,0.017801467],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99834526,0.00041398391,0.00036302864,0.0002455203,0.0002835663,0.00034861953],"domain_scores_gemma":[0.9986686,0.00018399654,0.00018462242,0.00074666855,0.000096857875,0.00011924791],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040460966,0.00029830364,0.00047133953,0.00019657712,0.00036894824,0.0000329858,0.00011608947,0.00083680946,0.00009289615],"category_scores_gemma":[0.00017221888,0.00020101547,0.00014415768,0.000103255355,0.00024289255,0.00006567391,0.00012140175,0.0017863419,0.0001935798],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016642762,0.000057378107,0.007869352,0.00073259656,0.00012193583,0.00036056043,0.00013911971,1.8772745e-8,0.022421062,0.0000017744383,0.9663327,0.001946916],"study_design_scores_gemma":[0.0006384072,0.00034853962,0.005813699,0.00072725536,0.00012525237,0.0005076044,0.000018668756,8.643531e-7,0.0012991197,0.00006810145,0.99019885,0.00025365912],"about_ca_topic_score_codex":0.000055250784,"about_ca_topic_score_gemma":0.00000713824,"teacher_disagreement_score":0.048201054,"about_ca_system_score_codex":0.00009032447,"about_ca_system_score_gemma":0.00016540368,"threshold_uncertainty_score":0.8197173},"labels":[],"label_agreement":null},{"id":"W2552890935","doi":"10.1136/bmjopen-2016-011636","title":"Non-treatment of children with community health worker-diagnosed fast-breathing pneumonia in rural Malawi: exploratory subanalysis of a prospective cohort study","year":2016,"lang":"en","type":"article","venue":"BMJ Open","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Heart, Lung, and Blood Institute; Bill and Melinda Gates Foundation","keywords":"Medicine; Pneumonia; Prospective cohort study; Community-acquired pneumonia; Cohort study; Logistic regression; Cohort; Pediatrics; Intensive care medicine; Internal medicine","score_opus":0.04156513942850171,"score_gpt":0.36818745105411366,"score_spread":0.32662231162561195,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2552890935","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9855119,0.000023262795,0.00001735584,0.00033949103,0.000023480688,0.013577409,0.000028665147,0.000020308882,0.0004581047],"genre_scores_gemma":[0.9980421,0.000030666477,0.000050010884,0.00006396291,0.00002507592,0.0016218573,0.000012757047,0.000026057003,0.00012749132],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99813265,0.00046109146,0.0005976621,0.00024246701,0.00031334313,0.00025280955],"domain_scores_gemma":[0.99828655,0.00011799185,0.0004090614,0.0008848739,0.00015855445,0.00014299301],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009402155,0.00022245405,0.0010284376,0.00024536048,0.00015973825,0.000016656606,0.00023122491,0.00005704373,0.000026377398],"category_scores_gemma":[0.00004145764,0.00012790355,0.000103307466,0.00055952114,0.00013245946,0.00019649976,0.00014406673,0.00016151337,0.000007429256],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040243258,0.004174677,0.9852944,0.0000309715,0.0008951193,0.000033173314,0.005082634,0.000017365779,0.0013386544,0.0000037565655,0.000009389341,0.0027174135],"study_design_scores_gemma":[0.006643372,0.0056996243,0.98009306,0.000864266,0.00025333447,0.00003438257,0.005468548,0.000005966044,0.00078952935,0.0000061952337,0.0000063188872,0.00013540509],"about_ca_topic_score_codex":0.011263228,"about_ca_topic_score_gemma":0.010477287,"teacher_disagreement_score":0.012530199,"about_ca_system_score_codex":0.00044257147,"about_ca_system_score_gemma":0.0005644125,"threshold_uncertainty_score":0.99532086},"labels":[],"label_agreement":null},{"id":"W2554051750","doi":"10.1097/md.0000000000005179","title":"Prognostic factors associated with mortality and major in-hospital complications in patients with bacteremic pneumococcal pneumonia","year":2016,"lang":"en","type":"article","venue":"Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; Government of Canada; University of Alberta","funders":"Pfizer Canada; Government of Canada; University of Alberta; Pfizer","keywords":"Medicine; Odds ratio; Pneumonia; Case fatality rate; Internal medicine; Confidence interval; Population; Mortality rate; Prospective cohort study; Pediatrics; Epidemiology","score_opus":0.020748685048322363,"score_gpt":0.2627319671085529,"score_spread":0.24198328206023054,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2554051750","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99481326,0.000012817803,0.000020087156,0.0038866105,0.00006273131,0.00086532463,0.000021423184,0.000057431927,0.0002602935],"genre_scores_gemma":[0.9996394,0.0000052647074,0.0000034655889,0.00013910512,0.00002996052,0.000065924425,0.000051665924,0.000023181548,0.0000420254],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99874103,0.000053588024,0.00031387733,0.00032608365,0.00027378232,0.00029164346],"domain_scores_gemma":[0.9991303,0.00020250071,0.00011250519,0.000247265,0.00012118498,0.00018622061],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012307054,0.0002037735,0.0003916814,0.0002322031,0.000058511483,0.0000052404307,0.000057696958,0.00008741972,0.000036767655],"category_scores_gemma":[0.00033567264,0.00009840363,0.000018241702,0.0004181604,0.00033611705,0.00009867495,0.000020697556,0.00020935426,0.0000045017646],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003243495,0.00059549644,0.99107355,0.00002099392,0.00005453276,0.000017707436,0.00023119255,2.659612e-7,0.0077275513,0.000016628055,0.000009217234,0.00022040441],"study_design_scores_gemma":[0.00610339,0.001986106,0.9902941,0.00110662,0.00010929589,0.0000043258465,0.00006432122,0.00000444634,0.000031038042,0.000018957824,0.00012789729,0.00014951025],"about_ca_topic_score_codex":0.00008853677,"about_ca_topic_score_gemma":0.0006690753,"teacher_disagreement_score":0.007696513,"about_ca_system_score_codex":0.00016774808,"about_ca_system_score_gemma":0.00007623693,"threshold_uncertainty_score":0.40127835},"labels":[],"label_agreement":null},{"id":"W2555628444","doi":"","title":"Pharmacodynamic profiling of fluoroquinolones in Community Acquired Pneumonia (CAP) patients: Dose and age stratification study","year":2013,"lang":"en","type":"article","venue":"Clinical Pharmacology & Biopharmaceutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Levofloxacin; Gatifloxacin; Pharmacodynamics; Dosing; Cefuroxime; Community-acquired pneumonia; Internal medicine; Pharmacokinetics; Pneumonia; Antibiotics","score_opus":0.08224657066586569,"score_gpt":0.4329895699730382,"score_spread":0.35074299930717256,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2555628444","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947503,0.00016824795,0.0000054122274,0.00085084484,0.0010093064,0.0029638766,0.000023610744,0.0000959877,0.00013241643],"genre_scores_gemma":[0.9966313,0.0005715271,0.00010467831,0.0022172807,0.0001546721,0.00020759145,0.000045622015,0.00003392273,0.0000333929],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99617374,0.0013365113,0.0014537922,0.00040971342,0.00021625537,0.00040999084],"domain_scores_gemma":[0.99800026,0.0005975178,0.0003934033,0.0003478912,0.00033020644,0.00033073613],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010244555,0.000300355,0.000752679,0.0002824737,0.00021096558,0.0000198936,0.00023849081,0.00027305476,0.0001311273],"category_scores_gemma":[0.00017816729,0.00026985843,0.00011822573,0.00044368926,0.00077538594,0.00019909235,0.0001947614,0.0011716798,0.000043788765],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016855751,0.0059848307,0.4877697,0.0001314592,0.00017197481,0.000024155219,0.00032067663,0.000011807939,0.5006378,0.0000034102752,0.00010247039,0.0046731075],"study_design_scores_gemma":[0.010302026,0.0021063536,0.9704036,0.00004077568,0.0006104488,0.000011006876,0.0006114584,0.0024599812,0.01291097,0.00004912005,0.00025551394,0.0002387275],"about_ca_topic_score_codex":0.00006554656,"about_ca_topic_score_gemma":0.0000167359,"teacher_disagreement_score":0.48772687,"about_ca_system_score_codex":0.00007907248,"about_ca_system_score_gemma":0.00012347441,"threshold_uncertainty_score":0.9999754},"labels":[],"label_agreement":null},{"id":"W2558544919","doi":"10.1007/s40265-016-0667-z","title":"Solithromycin: A Novel Fluoroketolide for the Treatment of Community-Acquired Bacterial Pneumonia","year":2016,"lang":"en","type":"review","venue":"Drugs","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":49,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Boniface Hospital; Health Sciences Centre; University of Manitoba","funders":"","keywords":"Ketolide; Telithromycin; Streptococcus pneumoniae; Microbiology; Medicine; Biology; Pharmacology; Antibiotics","score_opus":0.09072066963484758,"score_gpt":0.3764393947325712,"score_spread":0.2857187250977236,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2558544919","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0005784308,0.9921362,0.00015258531,0.00050830696,0.0013455487,0.0033254852,0.0010045957,0.00007799694,0.0008708929],"genre_scores_gemma":[0.00014270029,0.9962703,0.00003203116,0.00008656374,0.0008906483,0.0009874976,0.00014866337,0.000079702964,0.0013618708],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984902,0.00018072473,0.000662752,0.00019080691,0.00015768946,0.00031782294],"domain_scores_gemma":[0.9972633,0.0012226839,0.00039214152,0.0008881039,0.0001134623,0.000120291625],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002300778,0.00043011492,0.0018557148,0.00014755741,0.00034934675,0.000018847832,0.00021199932,0.00029212006,0.00006805889],"category_scores_gemma":[0.000062876956,0.00020037801,0.0011729255,0.0001596367,0.00022183248,0.000034134013,0.000040928906,0.00015111745,0.000050003102],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003739932,0.0008591965,0.000002776017,0.0052420646,0.0010435999,0.0000020165721,0.0006235402,3.4543874e-8,0.002011461,0.00007685873,0.00042049176,0.9896806],"study_design_scores_gemma":[0.001570289,0.0009795998,0.00003403136,0.004529892,0.002551211,0.00009737282,0.00007401643,8.0001706e-7,0.00008275918,0.000009177658,0.98988205,0.00018882118],"about_ca_topic_score_codex":0.00006401749,"about_ca_topic_score_gemma":0.000011376303,"teacher_disagreement_score":0.98949176,"about_ca_system_score_codex":0.00026891945,"about_ca_system_score_gemma":0.000499572,"threshold_uncertainty_score":0.8171178},"labels":[],"label_agreement":null},{"id":"W2559001170","doi":"10.1093/ofid/ofw194.74","title":"The Burden of Pneumococcal Community-Acquired Pneumonia and Invasive Pneumococcal Disease in Hospitalized Adults: A Canadian Immunization Research Network (CIRN) Serious Outcomes Surveillance (SOS) Network Study","year":2016,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University; Université de Sherbrooke; McMaster University; Mount Sinai Hospital; Horizon Health Network; University of British Columbia; Ottawa Hospital; Izaak Walton Killam Health Centre; Centre hospitalier universitaire de Québec; Nova Scotia Health Authority; Dalhousie University","funders":"Pfizer","keywords":"Medicine; Pneumococcal disease; Pneumonia; Community-acquired pneumonia; Immunization; Streptococcus pneumoniae; Pneumococcal pneumonia; Intensive care medicine; Disease; Immunology; Antibiotics; Internal medicine; Antibody; Microbiology","score_opus":0.01890468769244192,"score_gpt":0.31486855697352006,"score_spread":0.29596386928107815,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2559001170","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98852575,0.00047507236,0.0000045424003,0.004939448,0.00035605422,0.0047066696,0.00014407607,0.00008496221,0.0007634001],"genre_scores_gemma":[0.99793327,0.00056267687,0.0000019651977,0.00022868787,0.0001604809,0.00076076406,0.000052431547,0.00007731225,0.00022238781],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99435043,0.002527434,0.0008126356,0.0005206457,0.00048696037,0.001301891],"domain_scores_gemma":[0.9949245,0.0020384786,0.00026149245,0.0012677583,0.0005690006,0.00093879376],"candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.0017210745,0.00041787286,0.0008363496,0.000313577,0.0024353904,0.00027246997,0.0007009609,0.00015019023,0.000039342784],"category_scores_gemma":[0.0021746568,0.00027034106,0.00017084135,0.0012970922,0.0007310185,0.00040852433,0.00087610655,0.00046632774,0.000025058878],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005617334,0.00074241403,0.99518144,0.00006604692,0.00023818338,0.000094516035,0.0005568323,0.00040624558,0.00026777468,0.0002130835,0.00028448206,0.00138727],"study_design_scores_gemma":[0.0044809533,0.0014760763,0.98832357,0.0005870296,0.00009814315,0.000016369335,0.0017136852,0.00007253439,0.0000031886852,0.0013700209,0.0015213767,0.00033702917],"about_ca_topic_score_codex":0.09215413,"about_ca_topic_score_gemma":0.2985422,"teacher_disagreement_score":0.20638807,"about_ca_system_score_codex":0.00047368085,"about_ca_system_score_gemma":0.0013058655,"threshold_uncertainty_score":0.9999749},"labels":[],"label_agreement":null},{"id":"W2559789015","doi":"10.1093/pch/21.2.89","title":"Pneumococcal conjugate vaccines for preventing otitis media","year":2016,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario","funders":"","keywords":"Otitis; Medicine; Acute otitis media; Context (archaeology); Conjugate; Streptococcus pneumoniae; Pneumococcal conjugate vaccine; Conjugate vaccine; Pneumococcal infections; Pediatrics; Immunology; Intensive care medicine; Microbiology; Immunization; Biology; Antibiotics; Antigen; Surgery; Mathematics","score_opus":0.018267732749587387,"score_gpt":0.29444991374115864,"score_spread":0.27618218099157127,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2559789015","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7887199,0.004272393,0.008490866,0.18358575,0.005169135,0.0042201052,0.00047949614,0.0008087204,0.0042536464],"genre_scores_gemma":[0.9875956,0.00279486,0.00042882556,0.0048297383,0.0037444583,0.00012600566,0.000034712735,0.000059064187,0.000386722],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982636,0.00006681998,0.00051871815,0.00035002074,0.00021434783,0.0005865074],"domain_scores_gemma":[0.9984288,0.00046411212,0.00022476309,0.00027908102,0.000149266,0.0004539691],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005487977,0.00018933488,0.00040946208,0.00022114447,0.00038659797,0.000015075797,0.00009005198,0.000121132696,0.00007116651],"category_scores_gemma":[0.000658595,0.00012499544,0.0002072,0.00028974938,0.00003531031,0.00009270268,0.000039218958,0.00019312196,0.00008766554],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013571013,0.0007450371,0.8308761,0.0014103524,0.00017275175,0.000027784887,0.00083121064,0.000003615745,0.006775083,0.004639417,0.019405818,0.13497709],"study_design_scores_gemma":[0.006150564,0.0010036104,0.67439646,0.00040506225,0.0001809555,0.00021297665,0.000059278143,0.000032884396,0.0004707621,0.0011846337,0.3154991,0.00040371084],"about_ca_topic_score_codex":0.000020326079,"about_ca_topic_score_gemma":0.000063978405,"teacher_disagreement_score":0.29609329,"about_ca_system_score_codex":0.00013673697,"about_ca_system_score_gemma":0.0003999726,"threshold_uncertainty_score":0.5097166},"labels":[],"label_agreement":null},{"id":"W2559798955","doi":"10.1164/rccm.201606-1171ed","title":"Hospital-acquired Pneumonia: A Host of Factors","year":2016,"lang":"en","type":"letter","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Medicine; Pneumonia; Intensive care medicine; Host (biology); Host factors; Virology; Internal medicine","score_opus":0.017423590214616386,"score_gpt":0.30308264051853706,"score_spread":0.2856590503039207,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2559798955","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.38931543,0.0065194177,0.00011751377,0.6005504,0.0017046339,0.0003345182,0.000117553725,0.000039645678,0.0013008559],"genre_scores_gemma":[0.76485074,0.00026117274,0.000025400985,0.22850545,0.006200067,0.0000068990967,0.000007736885,0.000076366254,0.00006619307],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99639684,0.00032295528,0.0013179653,0.00039675835,0.0010240569,0.0005414279],"domain_scores_gemma":[0.99548763,0.0010645896,0.000880901,0.00047589993,0.0015323512,0.00055860524],"candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.00035144427,0.00053086755,0.0021776322,0.0007076006,0.00013521692,0.00001335598,0.00024431595,0.00045511697,0.00018989305],"category_scores_gemma":[0.0016092878,0.0003117753,0.00046189906,0.0003940312,0.004554892,0.00013300689,0.00006126617,0.0014783285,0.000004347556],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011140665,0.0006316062,0.2041194,0.008652817,0.002895457,0.024294289,0.010198184,2.990556e-7,0.2136272,0.0004335362,0.45198056,0.08205258],"study_design_scores_gemma":[0.002013541,0.033940442,0.022067647,0.0036866628,0.0018266999,0.00088261056,0.0038084765,1.11976114e-7,0.000948617,0.00006861422,0.9302816,0.00047501625],"about_ca_topic_score_codex":0.000016218693,"about_ca_topic_score_gemma":9.662301e-7,"teacher_disagreement_score":0.478301,"about_ca_system_score_codex":0.00013407238,"about_ca_system_score_gemma":0.00051291764,"threshold_uncertainty_score":0.9999334},"labels":[],"label_agreement":null},{"id":"W2560193563","doi":"10.1016/s2214-109x(16)30338-2","title":"The indirect effect of pneumococcal conjugate vaccine","year":2016,"lang":"en","type":"letter","venue":"The Lancet Global Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute for Health and Care Research","keywords":"Medicine; Pneumococcal conjugate vaccine; Population; Immunology; Conjugate vaccine; Glycoconjugate; Herd immunity; Streptococcus pneumoniae; Incidence (geometry); Respiratory tract infections; Pneumonia; Vaccination; Pneumococcal infections; Immunization; Biology; Microbiology; Antigen; Internal medicine; Antibiotics; Environmental health; Respiratory system","score_opus":0.020294083305591005,"score_gpt":0.34945471296668984,"score_spread":0.3291606296610988,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2560193563","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.015624654,0.001492346,0.0000071564214,0.9734094,0.0014149272,0.0012427388,0.00035134808,0.00012847822,0.006328925],"genre_scores_gemma":[0.03864885,0.0027811185,0.0000029612165,0.9410528,0.015973596,0.00011372844,0.00006479559,0.000051306182,0.0013108227],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9969767,0.0008828393,0.00053175644,0.00030515707,0.0004285345,0.00087502843],"domain_scores_gemma":[0.9974461,0.00081039034,0.00046807085,0.0010620463,0.000084562584,0.00012880623],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014156246,0.00034899687,0.0012903371,0.000039679613,0.0004264593,0.000020976011,0.0004261356,0.00037645304,0.000031457184],"category_scores_gemma":[0.0001478649,0.00013113904,0.00027838914,0.0002572166,0.0002079825,0.000022264667,0.00009001969,0.0013584048,0.00017095868],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002508981,0.000011721968,0.0079396255,0.00055264286,0.0002509739,0.00005286748,0.000017620005,2.4714956e-7,0.00015473364,0.00009992613,0.9757034,0.014965346],"study_design_scores_gemma":[0.0015484615,0.0013704208,0.02614529,0.00053767464,0.00014275099,0.00028315684,0.0000020374357,0.000001965991,0.000093035334,0.00023259851,0.9695195,0.00012310821],"about_ca_topic_score_codex":0.000107525724,"about_ca_topic_score_gemma":0.00006227775,"teacher_disagreement_score":0.032356605,"about_ca_system_score_codex":0.0003899693,"about_ca_system_score_gemma":0.0005820468,"threshold_uncertainty_score":0.5901668},"labels":[],"label_agreement":null},{"id":"W2560359438","doi":"10.1109/ichi.2016.70","title":"Combining Particle Filtering and Transmission Modeling for TB Control","year":2016,"lang":"en","type":"article","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Particle filter; Transmission (telecommunications); Computer science; Population; Filter (signal processing); Tuberculosis; Control (management); Particle (ecology); Data mining; Kalman filter; Artificial intelligence; Medicine; Environmental health; Telecommunications","score_opus":0.030422694252350214,"score_gpt":0.28339939592561214,"score_spread":0.2529767016732619,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2560359438","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5799058,0.000027734972,0.41624433,0.0032352088,0.000028365372,0.00014394705,0.0000012238532,0.000050353763,0.00036302037],"genre_scores_gemma":[0.9985828,0.000015034035,0.0003737029,0.00057315157,0.000036103887,0.000023975634,2.3124797e-7,0.000007554858,0.00038744396],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9996505,0.000005535382,0.000097186174,0.00009199414,0.00003905147,0.00011574867],"domain_scores_gemma":[0.99976593,0.00004944122,0.000009260335,0.000058201607,0.000025836633,0.00009131633],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007196582,0.00004699574,0.000094288545,0.000017834898,0.000080441125,0.000006314703,0.000010759761,0.00002851018,0.000038065038],"category_scores_gemma":[0.00001864675,0.000025357576,0.00003301903,0.000019764744,0.000014332086,0.000051103765,0.000003437664,0.000022741384,0.000003548943],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054657045,0.000026384156,0.0055341497,0.000023301847,0.000016236498,0.0000014164948,0.00005890494,0.000050605868,0.9703719,0.00043067444,0.00002349923,0.02340825],"study_design_scores_gemma":[0.01917536,0.0012182706,0.00393894,0.0005264149,0.00020409626,0.00010577219,0.00016500578,0.8345476,0.11425768,0.0009838358,0.024585692,0.00029137984],"about_ca_topic_score_codex":0.0000023977032,"about_ca_topic_score_gemma":8.060693e-7,"teacher_disagreement_score":0.85611427,"about_ca_system_score_codex":0.000008149485,"about_ca_system_score_gemma":0.000012332697,"threshold_uncertainty_score":0.10340519},"labels":[],"label_agreement":null},{"id":"W2560838831","doi":"10.1093/ofid/ofw194.80","title":"Invasive Pneumococcal Disease (IPD) in Children and Adults Following Introduction of Pneumococcal Conjugate Vaccines: Data From Population Based Surveillance 2001–2015","year":2016,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Medicine; Pneumococcal disease; Pneumococcal conjugate vaccine; Streptococcus pneumoniae; Pathogenic organism; Pediatrics; Pneumococcal infections; Population; Disease; Microbiology; Antibiotics; Internal medicine; Environmental health","score_opus":0.012872944221732609,"score_gpt":0.28486927497127434,"score_spread":0.2719963307495417,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2560838831","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99290645,0.00021491732,0.000075663615,0.0032902202,0.00032245868,0.0015746889,0.0014502842,0.00009580138,0.000069489215],"genre_scores_gemma":[0.9969893,0.000117605356,0.000009801739,0.0002752401,0.0002744758,0.000106622436,0.0021515419,0.000044095632,0.000031318228],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9977093,0.00022428438,0.00056989124,0.00084313436,0.0002572302,0.00039617065],"domain_scores_gemma":[0.99793273,0.0002634345,0.00026102376,0.0009862313,0.0001178155,0.00043876164],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023202896,0.00030749364,0.00059728604,0.00026201454,0.00017529851,0.00007454107,0.00030211432,0.000109033506,0.00018101926],"category_scores_gemma":[0.0012941267,0.00023215069,0.00012737553,0.00035417947,0.00008106003,0.0009017412,0.000382904,0.00013725573,0.00002418474],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048777537,0.00058619404,0.9866387,0.000044978715,0.00013248507,0.00001919203,0.000010469459,0.000028432325,0.009843038,0.00002126394,0.0007257404,0.0014617108],"study_design_scores_gemma":[0.005761333,0.00027389565,0.99207646,0.00035903722,0.00021224996,0.000014094454,0.000027895441,0.00023279751,0.00016033121,0.00034572216,0.0002399889,0.00029618473],"about_ca_topic_score_codex":0.0020009938,"about_ca_topic_score_gemma":0.0028316632,"teacher_disagreement_score":0.009682707,"about_ca_system_score_codex":0.00014464084,"about_ca_system_score_gemma":0.0003391851,"threshold_uncertainty_score":0.94668305},"labels":[],"label_agreement":null},{"id":"W2561399765","doi":"10.5772/65740","title":"A Real-Time PCR-Based Diagnostic Test for Organisms in Respiratory Tract Infection","year":2016,"lang":"en","type":"book-chapter","venue":"InTech eBooks","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; Hospital for Sick Children","funders":"","keywords":"Respiratory tract; Pneumonia; Pathogen; Respiratory tract infections; Diagnostic test; Biology; Medicine; Respiratory system; Intensive care medicine; Microbiology; Internal medicine; Veterinary medicine","score_opus":0.0257502227062107,"score_gpt":0.27818649393649003,"score_spread":0.25243627123027934,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2561399765","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.022802504,0.0000729475,0.0017067844,0.0007009087,0.00100633,0.005013182,0.0003869133,0.0010242899,0.96728617],"genre_scores_gemma":[0.52648693,0.00007520932,0.0001182104,0.0027407994,0.001883391,0.0012575326,0.00007271077,0.0006102821,0.46675494],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980964,0.000027446315,0.00067189924,0.00055905466,0.00026386912,0.00038133105],"domain_scores_gemma":[0.99659514,0.0020671312,0.0002927359,0.00058346847,0.00025982846,0.00020170126],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003036311,0.00049525546,0.00069775694,0.000775754,0.00011746411,0.00002605031,0.00011067891,0.00089388405,0.0004011694],"category_scores_gemma":[0.001425228,0.00039960112,0.00036390495,0.00003631798,0.0002141512,0.000040021336,0.000033634038,0.0006437842,0.00056840543],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000091883,0.0002678475,0.0035257507,0.00035786512,0.00010105092,0.0002864995,0.00005906518,3.9379253e-7,0.983102,0.0016787874,0.00072128535,0.009807536],"study_design_scores_gemma":[0.0062126094,0.0055457824,0.005744543,0.0073684272,0.00072340295,0.00017613957,0.0000068956283,0.000009229755,0.16134852,0.0125646535,0.7989247,0.0013751289],"about_ca_topic_score_codex":0.000028907874,"about_ca_topic_score_gemma":0.0000793754,"teacher_disagreement_score":0.8217535,"about_ca_system_score_codex":0.00054081145,"about_ca_system_score_gemma":0.0007751931,"threshold_uncertainty_score":0.99984556},"labels":[],"label_agreement":null},{"id":"W2562276910","doi":"10.1093/ofid/ofw172.63","title":"Agreement Between Nasal Midturbinate and Nasopharyngeal Swab to Detect Streptococcus pneumoniae by Polymerase Chain Reaction in Children and Adults","year":2016,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"St. Joseph’s Healthcare Hamilton; McMaster University","funders":"","keywords":"Medicine; Streptococcus pneumoniae; Polymerase chain reaction; Microbiology; Gene; Genetics; Antibiotics; Biology","score_opus":0.005638942962215647,"score_gpt":0.25752992407984693,"score_spread":0.2518909811176313,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2562276910","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99396974,0.00031928008,0.000014513896,0.0024258678,0.00009416678,0.0020472084,0.00040344286,0.0000898704,0.0006359375],"genre_scores_gemma":[0.9981888,0.00016494867,0.0000023698485,0.0008241456,0.0000911365,0.00033079972,0.000055780994,0.00003556785,0.0003064498],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998332,0.00009473497,0.00033384564,0.00059175486,0.00019418848,0.0004534588],"domain_scores_gemma":[0.99888366,0.00008827868,0.000107893684,0.00029196296,0.000049198483,0.00057897886],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012104998,0.00029513228,0.0004120313,0.00026941192,0.00024969704,0.000093319824,0.00010792119,0.00011277226,0.00006702417],"category_scores_gemma":[0.00010521598,0.00021777922,0.000069317306,0.0002528794,0.00009954413,0.0003563002,0.0002405363,0.00014608653,0.00004292921],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010024673,0.00020137946,0.8968281,0.000021020298,0.000105850886,0.000013012877,0.000037941354,2.0467006e-7,0.024239011,0.00001583517,0.0008677112,0.07756967],"study_design_scores_gemma":[0.005124957,0.0014279932,0.9883154,0.000276546,0.00013242365,0.00004329966,0.000030474723,0.0000025453346,0.0027584143,0.000119417295,0.0014572375,0.0003113154],"about_ca_topic_score_codex":0.00084902963,"about_ca_topic_score_gemma":0.0003474428,"teacher_disagreement_score":0.09148726,"about_ca_system_score_codex":0.00016735676,"about_ca_system_score_gemma":0.00008530173,"threshold_uncertainty_score":0.8880779},"labels":[],"label_agreement":null},{"id":"W2563802942","doi":"10.16288/j.yczz.16-142","title":"Epidemiological study on the penicillin resistance of clinical Streptococcus pneumoniae isolates identified as the common sequence types.","year":2016,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Education and Child Care","funders":"","keywords":"Penicillin; Microbiology; Streptococcus pneumoniae; Minimum inhibitory concentration; Biology; Veterinary medicine; Population; Penicillin resistance; Antibiotics; Medicine","score_opus":0.1548758490103666,"score_gpt":0.3834451704724299,"score_spread":0.22856932146206327,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2563802942","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9675342,0.00007062054,0.000007734063,0.0261764,0.00033166548,0.0021631257,0.00001372216,0.000057106674,0.003645425],"genre_scores_gemma":[0.99444216,0.000070604416,0.0000012479666,0.0018044133,0.00016943956,0.001080241,7.9756734e-7,0.000013100553,0.0024179835],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9972934,0.00096350355,0.00080708,0.00034730075,0.00025804844,0.00033066812],"domain_scores_gemma":[0.9945356,0.0040570614,0.00031832934,0.0008396673,0.000113674105,0.00013565486],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0033632983,0.0001677451,0.00051281706,0.000039781535,0.00018997936,0.000014195595,0.000325161,0.00012706827,0.000063238906],"category_scores_gemma":[0.0048933304,0.00005925142,0.00023972357,0.0002052947,0.0004956168,0.000044081924,0.00008084599,0.00041298114,0.00011043181],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027112378,0.0008292381,0.9744722,0.000013031034,0.0002467745,0.00003717227,0.00013544467,0.0000015865753,0.0051862462,0.0021073408,0.0019295678,0.014770267],"study_design_scores_gemma":[0.0006859628,0.0003277168,0.9861258,0.00004392465,0.00010087278,0.0000058804894,0.00014786966,0.0000040241093,0.0005342281,0.0010246465,0.010914569,0.00008445466],"about_ca_topic_score_codex":0.000017457443,"about_ca_topic_score_gemma":0.0000816984,"teacher_disagreement_score":0.026907971,"about_ca_system_score_codex":0.000044050867,"about_ca_system_score_gemma":0.00006325637,"threshold_uncertainty_score":0.5858127},"labels":[],"label_agreement":null},{"id":"W2566829716","doi":"10.1097/paf.0000000000000284","title":"Streptococcus Pneumoniae Detection Long Time After Death in a Fatal Case of Waterhouse-Friderichsen Syndrome","year":2016,"lang":"en","type":"article","venue":"American Journal of Forensic Medicine & Pathology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Surgical Specialties (Canada)","funders":"","keywords":"Autopsy; Streptococcus pneumoniae; Medicine; Cause of death; Pathology; Microbiology; Biology; Disease","score_opus":0.009106863673121461,"score_gpt":0.26554852663463163,"score_spread":0.25644166296151016,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2566829716","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99637806,0.00009832256,0.00089738483,0.0019632338,0.0003145754,0.00023128056,0.000007299648,0.000021645825,0.0000882053],"genre_scores_gemma":[0.9991224,0.000057894405,0.00009791754,0.0003900889,0.00021311209,0.00001571933,9.4688227e-7,0.000033042656,0.00006889557],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978762,0.00023435884,0.0010140364,0.00024456414,0.00025589624,0.00037491767],"domain_scores_gemma":[0.9981699,0.00022837531,0.0007371263,0.0003241854,0.0002729296,0.000267495],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00053372036,0.00023625244,0.0010882379,0.00076073396,0.000036874535,0.0000024603726,0.0000918244,0.00009748821,0.00015930219],"category_scores_gemma":[0.00033219883,0.00013199451,0.0001798425,0.00041705352,0.0010001591,0.000115122355,0.00003720605,0.00035177718,0.00002102963],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043163716,0.0001933395,0.36905503,0.000046359797,0.00015740578,0.13527487,0.0009049382,0.0000042974043,0.3474611,0.000005070679,0.000042474723,0.1464235],"study_design_scores_gemma":[0.0038233027,0.015282798,0.55583334,0.0008648538,0.00038124985,0.41432318,0.0005680852,0.000015318914,0.008382627,0.000103520106,0.0002179348,0.00020376571],"about_ca_topic_score_codex":0.000074488315,"about_ca_topic_score_gemma":0.000116290146,"teacher_disagreement_score":0.33907846,"about_ca_system_score_codex":0.00013270552,"about_ca_system_score_gemma":0.00013427612,"threshold_uncertainty_score":0.538258},"labels":[],"label_agreement":null},{"id":"W2569307502","doi":"10.1371/journal.pone.0169368","title":"Effectiveness of the 23-Valent Pneumococcal Polysaccharide Vaccine (PPV23) against Pneumococcal Disease in the Elderly: Systematic Review and Meta-Analysis","year":2017,"lang":"en","type":"review","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":260,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Meta-analysis; Observational study; Pneumococcal polysaccharide vaccine; Systematic review; Randomized controlled trial; Cohort study; Internal medicine; Pneumococcal conjugate vaccine; Clinical trial; MEDLINE; Vaccine efficacy; Vaccination; Pediatrics; Streptococcus pneumoniae; Pneumococcal disease; Immunology","score_opus":0.1641725294519797,"score_gpt":0.35368222501955304,"score_spread":0.18950969556757336,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2569307502","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0012684949,0.9859587,0.0000018009733,0.00077261735,0.000037073463,0.011635605,0.00019826542,0.000029650273,0.00009778469],"genre_scores_gemma":[0.010712452,0.9850007,0.000002302445,0.00026191372,0.000051230334,0.0036304656,0.000044578697,0.000059582097,0.00023674621],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9929213,0.0034675589,0.0016972041,0.00069782155,0.0008339553,0.00038217945],"domain_scores_gemma":[0.994018,0.0012360107,0.0014343857,0.0028565105,0.00020301003,0.00025203585],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0026715712,0.0007422327,0.011409745,0.0004453736,0.0002747477,0.00006294666,0.0008398372,0.00025202276,0.000033750734],"category_scores_gemma":[0.0016599047,0.0003220909,0.0042280164,0.0010797482,0.00015112033,0.00008685938,0.00022490739,0.0009851668,0.000026872232],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000082397,0.0010435006,0.0003013104,0.890299,0.10796334,0.000048176706,0.000015090916,6.1822703e-7,0.000105372594,0.000025324865,0.000002788674,0.00018720438],"study_design_scores_gemma":[0.00022417658,0.00011371896,0.0022944994,0.1854503,0.8107086,0.00002405603,0.0000031512318,0.000004099007,0.0000056875906,0.000008131811,0.00090146106,0.00026215403],"about_ca_topic_score_codex":0.000020317406,"about_ca_topic_score_gemma":0.000019989922,"teacher_disagreement_score":0.7048487,"about_ca_system_score_codex":0.00013124214,"about_ca_system_score_gemma":0.00035006079,"threshold_uncertainty_score":0.9999231},"labels":[],"label_agreement":null},{"id":"W2569540328","doi":"10.1371/journal.ppat.1006090","title":"Molecular Characterization of N-glycan Degradation and Transport in Streptococcus pneumoniae and Its Contribution to Virulence","year":2017,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia; University of Victoria","funders":"SLAC National Accelerator Laboratory; Biological and Environmental Research; Canada Foundation for Innovation; National Center for Research Resources; National Institute of General Medical Sciences; British Columbia Knowledge Development Fund; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Office of Science; Canada Research Chairs; National Institutes of Health; Michael Smith Health Research BC; U.S. Department of Energy","keywords":"Glycan; Glycosylation; Biology; Mannose; Streptococcus pneumoniae; Virulence; Glycoprotein; Biochemistry; Microbiology; ATP-binding cassette transporter; Enzyme; Bacteria; Transporter; Gene","score_opus":0.016697967247159624,"score_gpt":0.2643974460344374,"score_spread":0.24769947878727774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2569540328","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984001,0.000020308846,0.00020908198,0.0005928652,0.000032666394,0.00058370555,0.000100682795,0.000015612011,0.000045003377],"genre_scores_gemma":[0.99969816,0.00007774254,0.0000077269015,0.000093777475,0.000017649087,0.000045063378,0.000037349113,0.000008425788,0.000014095498],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99941504,0.000021916363,0.00018349855,0.00015657778,0.000108580636,0.00011435825],"domain_scores_gemma":[0.99952143,0.0000083421055,0.00010034324,0.00017265236,0.00009881777,0.00009840971],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000843185,0.00008506356,0.00018296756,0.00010334263,0.00009816245,0.000011242245,0.00003429141,0.000066108296,0.000004178365],"category_scores_gemma":[0.00011518105,0.00008035094,0.000021652546,0.000065047236,0.0000348253,0.00011312371,0.000014409177,0.000068837086,0.0000020186026],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011473211,0.00005230944,0.32323554,0.000035576817,0.000008476269,0.00001761426,0.00009672977,8.34187e-7,0.6756934,0.00010771892,5.1417896e-8,0.0007402812],"study_design_scores_gemma":[0.00041555864,0.00013995472,0.76989645,0.00011918747,0.000049087103,0.0000069747025,0.000010643611,0.00023372495,0.22898965,0.000008070757,0.00006991186,0.000060820825],"about_ca_topic_score_codex":0.0000059391027,"about_ca_topic_score_gemma":0.000022798176,"teacher_disagreement_score":0.44670376,"about_ca_system_score_codex":0.000020974721,"about_ca_system_score_gemma":0.000032333905,"threshold_uncertainty_score":0.32766163},"labels":[],"label_agreement":null},{"id":"W2570864118","doi":"10.21037/atm.2016.11.41","title":"Alleviation of gram-negative bacterial lung inflammation by targeting HECTD2","year":2016,"lang":"en","type":"letter","venue":"Annals of Translational Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital; University of Toronto; Canadian Blood Services","funders":"Health Canada; Canadian Blood Services","keywords":"Inflammation; Gram; Medicine; Lung; Gram-negative bacterial infections; Gram-negative bacteria; Immunology; Microbiology; Biology; Bacteria; Antibiotics; Internal medicine; Escherichia coli; Genetics","score_opus":0.0400721240146392,"score_gpt":0.3279438827347431,"score_spread":0.2878717587201039,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2570864118","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.011948962,0.0005544096,0.0015038403,0.9820006,0.00065795035,0.00073113194,0.00044035842,0.00004417843,0.0021185572],"genre_scores_gemma":[0.5007332,0.0027770963,0.00069093925,0.4204566,0.05273341,0.0002419268,0.017916193,0.00031835755,0.004132324],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99723816,0.00015935246,0.001134432,0.000304738,0.0008875007,0.0002758155],"domain_scores_gemma":[0.9973504,0.0006329995,0.00081887766,0.00022216124,0.0008911871,0.00008439397],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00048374888,0.0003063786,0.0008218351,0.00039737584,0.0000703564,0.0000037903474,0.00010792693,0.000574469,0.0009342306],"category_scores_gemma":[0.0004555731,0.00021791774,0.00024191613,0.00023235983,0.00030840578,0.00016325428,0.000009180976,0.00055563427,0.000008837751],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017576477,0.000039193084,0.00086105004,0.0009958097,0.0005063576,0.000012451506,0.0004267157,0.0000058472647,0.28327683,0.00010282705,0.7101435,0.0034536358],"study_design_scores_gemma":[0.0029561198,0.00079277024,0.0044088573,0.002777574,0.00047589227,0.000019846131,0.000019838217,0.00007507893,0.03252831,0.0012696529,0.954362,0.00031406689],"about_ca_topic_score_codex":0.00003979959,"about_ca_topic_score_gemma":0.000002613003,"teacher_disagreement_score":0.561544,"about_ca_system_score_codex":0.000023447707,"about_ca_system_score_gemma":0.00020229917,"threshold_uncertainty_score":0.9999791},"labels":[],"label_agreement":null},{"id":"W2571165047","doi":"10.3389/fmicb.2016.02099","title":"Whole-genome Sequencing for Surveillance of Invasive Pneumococcal Diseases in Ontario, Canada: Rapid Prediction of Genotype, Antibiotic Resistance and Characterization of Emerging Serotype 22F","year":2016,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval; University Health Network; University of Toronto; Hospital for Sick Children; Public Health Ontario; Mount Sinai Hospital","funders":"University of Toronto; Pfizer","keywords":"Genotype; Antibiotic resistance; Serotype; Biology; Whole genome sequencing; Genetics; Antibiotics; Genome; Pneumococcal disease; Streptococcus pneumoniae; Microbiology; Gene","score_opus":0.009331583393048437,"score_gpt":0.19931561121530694,"score_spread":0.1899840278222585,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2571165047","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974574,0.00025668845,0.00064058957,0.00016611673,0.00032120096,0.00038701048,0.00075430365,0.000004212486,0.000012474276],"genre_scores_gemma":[0.99943775,0.00011526394,0.00014134229,0.000028946566,0.00001633683,0.0000069809807,0.0001615191,0.0000083628,0.00008348286],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991832,0.000065634944,0.0003891102,0.00018022163,0.00003069403,0.00015113648],"domain_scores_gemma":[0.9994809,0.000055253426,0.00021316955,0.000117831805,0.000102302016,0.000030534327],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011647995,0.00008859801,0.00039245345,0.00018525867,0.00001973241,7.221029e-7,0.00004385286,0.00008830502,0.0000063292405],"category_scores_gemma":[0.00009269692,0.00007198468,0.000030139327,0.00013354054,0.00014023877,0.00004115843,0.000016160677,0.000062922045,5.5037997e-8],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010701815,0.000017151977,0.46602994,0.00013268545,0.000021458178,0.0000014973624,0.000086723994,0.000003028137,0.53349113,0.0000028016977,0.00002134622,0.000085172986],"study_design_scores_gemma":[0.0009993758,0.00016568525,0.95215565,0.0002709856,0.00002180192,0.0000061847695,0.000069515576,0.0000051032466,0.045021117,0.000014872196,0.001209789,0.00005994945],"about_ca_topic_score_codex":0.019532764,"about_ca_topic_score_gemma":0.4808915,"teacher_disagreement_score":0.48847005,"about_ca_system_score_codex":0.00033207572,"about_ca_system_score_gemma":0.00074926385,"threshold_uncertainty_score":0.98699623},"labels":[],"label_agreement":null},{"id":"W2582497643","doi":"10.1155/2017/4347206","title":"Forecasting Trends in Invasive Pneumococcal Disease among Elderly Adults in Quebec","year":2017,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval; Institut National de Santé Publique du Québec","funders":"Ministère de la Santé; Public Health Agency; Ministère de la Santé et des Services sociaux; Public Health Agency of Canada; Pfizer","keywords":"Serotype; Pneumococcal disease; Poisson regression; Medicine; Incidence (geometry); Pediatrics; Demography; Vaccination; Environmental health; Streptococcus pneumoniae; Virology; Biology; Population","score_opus":0.010400733546113726,"score_gpt":0.24804395055675962,"score_spread":0.2376432170106459,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2582497643","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958003,0.0005786421,0.0000030278409,0.0025803135,0.00049461337,0.000116599134,0.000035561792,0.000005292844,0.00038565308],"genre_scores_gemma":[0.9989747,0.00011042855,0.0000012576742,0.00055024965,0.00025006488,0.000008072643,0.000012697635,0.000012287144,0.00008025878],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988003,0.00008749362,0.00044958713,0.0001930891,0.00006567564,0.00040389184],"domain_scores_gemma":[0.9973505,0.000101630736,0.00023585683,0.00017219057,0.00009960407,0.0020402134],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017357946,0.00015571318,0.00042186346,0.00075044436,0.00022259934,0.000047255046,0.00013571033,0.00019591393,0.00021755387],"category_scores_gemma":[0.00204045,0.00012542077,0.00014453015,0.000121330006,0.0006504645,0.00014925939,0.00002601147,0.00050162757,0.0000019517474],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007244203,0.00010321551,0.96490234,0.000053418404,0.0000344754,0.004975435,0.00014671368,0.000004435509,0.00036910636,0.000026491514,0.00015520335,0.02915671],"study_design_scores_gemma":[0.0029662186,0.0004711626,0.9919176,0.0009237096,0.0000682036,0.0012957024,0.0001042338,0.00003803019,0.0000069110934,0.0000774677,0.0020050725,0.00012569361],"about_ca_topic_score_codex":0.064671405,"about_ca_topic_score_gemma":0.77968824,"teacher_disagreement_score":0.71501684,"about_ca_system_score_codex":0.00023989915,"about_ca_system_score_gemma":0.0024750396,"threshold_uncertainty_score":0.94155705},"labels":[],"label_agreement":null},{"id":"W2586516287","doi":"10.1093/pch/17.suppl_a.23a","title":"Etiology of Bacterial Meningitis in Children Pre and Post Introduction of Pneumococcal and Meningococcal Vaccines","year":2012,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Meningococcal meningitis; Etiology; Meningitis; Medicine; Bacterial meningitis; Neisseria meningitidis; Pediatrics; Meningococcal disease; Streptococcus pneumoniae; Immunology; Intensive care medicine; Microbiology; Antibiotics; Biology; Internal medicine; Bacteria","score_opus":0.006288917684942671,"score_gpt":0.26208736747930506,"score_spread":0.2557984497943624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2586516287","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940299,0.0015333473,0.000010884699,0.0035865195,0.00027289672,0.00045812762,0.00003663876,0.000017917588,0.00005378167],"genre_scores_gemma":[0.9966464,0.0013823211,0.000102366095,0.00012442331,0.0016504107,0.000010518775,0.000065079534,0.000013260164,0.0000051937504],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988478,0.00011727885,0.00046155916,0.00019243403,0.000097028154,0.00028389634],"domain_scores_gemma":[0.99932563,0.00006213819,0.00022075315,0.00013196262,0.000064811844,0.00019468885],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045031647,0.00012315049,0.00042476357,0.00031001965,0.00007624204,0.0000033604097,0.000029974517,0.0001280917,0.000021605649],"category_scores_gemma":[0.0001610274,0.000107085674,0.000038978353,0.00024680217,0.00007343348,0.00009180275,0.000048333513,0.00024834648,7.3291636e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008329097,0.00018502072,0.9793743,0.00015880706,0.000025653866,2.1784238e-7,0.0008537847,0.0000015453375,0.016544666,0.0002566506,0.00007987894,0.0024362179],"study_design_scores_gemma":[0.0012844752,0.0007077671,0.9964061,0.00002287282,0.000048620223,0.00029411566,0.000051208153,0.000004685314,0.00031160002,0.000012482941,0.0007814224,0.00007470113],"about_ca_topic_score_codex":0.00017478038,"about_ca_topic_score_gemma":0.000022247978,"teacher_disagreement_score":0.017031783,"about_ca_system_score_codex":0.00003755095,"about_ca_system_score_gemma":0.0000969206,"threshold_uncertainty_score":0.4366827},"labels":[],"label_agreement":null},{"id":"W2587308493","doi":"10.1093/pch/14.suppl_a.54a","title":"Safety and Immunogenicity of a 13-Valent Pneumococcal Conjugate Vaccine in Healthy Infants Given with Routine Pediatric Vaccinations in Canada","year":2009,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; McGill University Health Centre; BC Children's Hospital; University of Manitoba; Izaak Walton Killam Health Centre; Children's Hospital Research Institute of Manitoba; Capital District Health Authority; Alberta Children's Hospital","funders":"","keywords":"Immunogenicity; Medicine; Pneumococcal conjugate vaccine; Vaccination; Pediatrics; Virology; Streptococcus pneumoniae; Immunology; Antigen; Microbiology; Antibiotics; Biology","score_opus":0.006538950091715115,"score_gpt":0.24920066672799665,"score_spread":0.24266171663628153,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2587308493","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96878326,0.002998846,0.00002375814,0.026665559,0.00011472059,0.0010466347,0.000083552644,0.000025536176,0.00025812266],"genre_scores_gemma":[0.98719275,0.009517687,0.000052638658,0.002966684,0.00019862624,0.0000135950695,0.000034287164,0.000018388306,0.000005372058],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99741405,0.00016791614,0.0010880873,0.00038088244,0.0003536422,0.00059542235],"domain_scores_gemma":[0.9986223,0.00015778455,0.00039972036,0.00029905984,0.00012403233,0.00039712072],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00063955836,0.00024458597,0.0007448838,0.00062661065,0.00017578894,0.0000065890813,0.000095486415,0.00009676025,0.000012949087],"category_scores_gemma":[0.00012689029,0.00020953154,0.000054542787,0.00155326,0.000011190685,0.00008598753,0.0000364523,0.00069315394,0.0000013526754],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006078669,0.0003094878,0.99595726,0.00022662962,0.000012894564,0.000029302195,0.0003136781,0.00020916465,0.000028150756,0.00004971832,0.000060742015,0.002195109],"study_design_scores_gemma":[0.00642521,0.0013999678,0.9910076,0.000071935436,0.000049431663,0.00008993887,0.00008509025,0.0001566883,0.0000117289765,0.000021725724,0.0005100668,0.00017058194],"about_ca_topic_score_codex":0.2655898,"about_ca_topic_score_gemma":0.6702202,"teacher_disagreement_score":0.4046304,"about_ca_system_score_codex":0.0010150583,"about_ca_system_score_gemma":0.00405991,"threshold_uncertainty_score":0.85444486},"labels":[],"label_agreement":null},{"id":"W2587572079","doi":"10.1002/prot.25264","title":"Structural characterization of the PTS IIA and IIB proteins associated with pneumococcal fucose utilization","year":2017,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"National Institute of General Medical Sciences","keywords":"Fucose; Operon; Streptococcus pneumoniae; Phosphotransferase; Transporter; Biochemistry; Permease; Glucose transporter; Biology; Bacteria; Gene; Microbiology; Computational biology; Chemistry; Glycoprotein; Genetics; Escherichia coli; Biotechnology","score_opus":0.02109008002094086,"score_gpt":0.24280201459865622,"score_spread":0.22171193457771535,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2587572079","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967096,0.0000085704905,0.0009912694,0.0005081373,0.00019218665,0.0012939291,0.00006126144,0.00004143963,0.00019362669],"genre_scores_gemma":[0.99939543,0.00001346611,0.00016119042,0.00015773386,0.00006178901,0.000019180985,0.00006852053,0.000011549784,0.000111113615],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991885,0.000027971595,0.00028497074,0.00012169863,0.00023206115,0.00014483467],"domain_scores_gemma":[0.9989024,0.000008211306,0.00050673215,0.00031079492,0.00018871702,0.000083157625],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007865223,0.00016824476,0.00021489934,0.00007514497,0.00077258406,0.00010187055,0.00006720416,0.0001570919,0.000023924258],"category_scores_gemma":[0.00016576033,0.00009247942,0.000037978156,0.00011918641,0.00025917034,0.00037047607,0.00006470563,0.00020733586,4.796661e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025545535,0.000057678117,0.3246678,0.00064892095,0.0001974717,0.0000012280797,0.0009176581,0.0000051690495,0.64794517,0.00065809867,0.0000049027944,0.02464041],"study_design_scores_gemma":[0.0013189227,0.00046609662,0.9830611,0.00021055182,0.00014405092,0.00007687031,0.000069337984,0.0031363165,0.01091538,0.00014585906,0.0003289833,0.00012657205],"about_ca_topic_score_codex":0.0000075519097,"about_ca_topic_score_gemma":0.00004694905,"teacher_disagreement_score":0.6583932,"about_ca_system_score_codex":0.00002816369,"about_ca_system_score_gemma":0.000076872086,"threshold_uncertainty_score":0.594217},"labels":[],"label_agreement":null},{"id":"W2587593686","doi":"10.1093/pch/20.8.446","title":"La pneumonie non compliquée chez les enfants et les adolescents canadiens en santé : points de pratique sur la prise en charge","year":2015,"lang":"fr","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Gynecology; Lung disease; Streptococcus pneumoniae; Antibiotics; Internal medicine; Lung","score_opus":0.016456705672846492,"score_gpt":0.30623906276404017,"score_spread":0.28978235709119365,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2587593686","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.90104973,0.020178527,0.0008049622,0.061359227,0.002881144,0.0021439507,0.00082805916,0.00026795964,0.010486446],"genre_scores_gemma":[0.9719641,0.017447973,0.00017183226,0.0062432135,0.0029827887,0.000057613335,0.000094505274,0.00014136646,0.0008965976],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9919856,0.004000695,0.0009857111,0.00071553566,0.00063827675,0.001674169],"domain_scores_gemma":[0.99520636,0.001020424,0.00054660096,0.0005841452,0.00028198352,0.0023604683],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0061221337,0.0006285704,0.0009513222,0.0005052897,0.00054672634,0.000090008114,0.00035875558,0.0010125007,0.000062981075],"category_scores_gemma":[0.0017911115,0.00062305393,0.00024521974,0.00068297633,0.00022393737,0.00021634676,0.0001781673,0.0029806003,0.00020308519],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008083361,0.0017817366,0.931845,0.002312011,0.00013946707,0.00038162412,0.027278561,0.000068685986,0.0002223657,0.0015192205,0.014458753,0.019911746],"study_design_scores_gemma":[0.0030188407,0.0006881437,0.7473136,0.0016271167,0.00020944649,0.0006920691,0.00088207464,0.00056826114,0.00005060232,0.00006575406,0.24431868,0.0005653922],"about_ca_topic_score_codex":0.025907943,"about_ca_topic_score_gemma":0.011978757,"teacher_disagreement_score":0.22985992,"about_ca_system_score_codex":0.0020395506,"about_ca_system_score_gemma":0.008159173,"threshold_uncertainty_score":0.9996221},"labels":[],"label_agreement":null},{"id":"W2587726702","doi":"10.1093/pch/14.suppl_a.50a","title":"Pediatric Complicated Pneumonia: Trends in Hospitalized Children Pre and Post Introduction of Routine Vaccination with Pneumococcal Conjugate Vaccine","year":2009,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Pneumonia; Pediatrics; Vaccination; Pneumococcal pneumonia; Pneumococcal vaccination; Streptococcus pneumoniae; Intensive care medicine; Immunology; Internal medicine; Antibiotics; Microbiology; Biology","score_opus":0.005384932301610224,"score_gpt":0.2615175144775066,"score_spread":0.25613258217589635,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2587726702","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9642473,0.0010342957,0.000035882433,0.033282086,0.00009225786,0.0008874785,0.000045839817,0.00012467227,0.00025020505],"genre_scores_gemma":[0.9957411,0.0019426395,0.000093881645,0.0008971661,0.00090710144,0.00001812751,0.00034297365,0.000030721647,0.000026234324],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9977883,0.00009728277,0.00079625327,0.0005456686,0.00031464003,0.0004578462],"domain_scores_gemma":[0.99861455,0.000032400283,0.0004780969,0.0003097839,0.00025713202,0.00030802563],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00041928547,0.00030328904,0.0007172317,0.0011611399,0.00021135823,0.000019942403,0.00008929677,0.00016250505,0.000024959041],"category_scores_gemma":[0.00006738426,0.00024874692,0.00008706217,0.0020421252,0.000025015173,0.00016691325,0.000029541443,0.0005635537,0.0000034339766],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026961789,0.00081539695,0.98862255,0.00012057907,0.000031737967,0.000004203843,0.0002742717,0.000051504896,0.00095687254,0.0002859623,0.00021339438,0.008353907],"study_design_scores_gemma":[0.004817102,0.0032272588,0.99092215,0.00002392954,0.00015642322,0.0002788323,0.000016971431,0.00009826911,0.00004409194,0.000030929747,0.00017045326,0.00021358668],"about_ca_topic_score_codex":0.00014265155,"about_ca_topic_score_gemma":0.000048331436,"teacher_disagreement_score":0.03238492,"about_ca_system_score_codex":0.0001676819,"about_ca_system_score_gemma":0.00014868885,"threshold_uncertainty_score":0.9999965},"labels":[],"label_agreement":null},{"id":"W2588609045","doi":"10.1136/bmj.j413","title":"Risk of heart failure after community acquired pneumonia: prospective controlled study with 10 years of follow-up","year":2017,"lang":"en","type":"article","venue":"BMJ","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":107,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dalhousie University; Alliance for Canadian Health Outcomes Research in Diabetes; University of Alberta","funders":"","keywords":"Medicine; Hazard ratio; Heart failure; Interquartile range; Pneumonia; Confidence interval; Prospective cohort study; Relative risk; Internal medicine; Proportional hazards model; Community-acquired pneumonia; Cohort study; Incidence (geometry)","score_opus":0.015800880355445482,"score_gpt":0.30338134991473514,"score_spread":0.2875804695592897,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2588609045","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99606156,0.00001742583,0.0000049761543,0.000664381,0.0001012134,0.0021031403,0.00002751751,0.000026505604,0.0009932696],"genre_scores_gemma":[0.9988265,0.0000021184542,0.000055884735,0.000049029615,0.00006393504,0.00023965648,0.0000012935802,0.000018145152,0.00074342417],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998875,0.00026314976,0.00031812536,0.0001361129,0.00026043114,0.00014716998],"domain_scores_gemma":[0.99810016,0.00011690523,0.00038010048,0.001039909,0.00028361147,0.000079328056],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005496193,0.00012969768,0.0006700619,0.00008221291,0.0002556147,0.000016203776,0.00013768834,0.00007850032,0.00006205226],"category_scores_gemma":[0.000527929,0.00009236368,0.00016752757,0.0000773039,0.0002589678,0.000081956205,0.000076566364,0.00023969045,0.00001703235],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003571401,0.0010278662,0.98180574,0.000034638946,0.0006787284,0.000023957968,0.0013712647,0.0000030297783,0.010855426,0.000004230055,0.0005159558,0.000107741165],"study_design_scores_gemma":[0.017374724,0.003193551,0.975745,0.00010305393,0.0005489678,0.000020034215,0.0012614258,0.0000061589903,0.0007912305,0.000023022541,0.0008396794,0.000093138704],"about_ca_topic_score_codex":0.00041188364,"about_ca_topic_score_gemma":0.0012299082,"teacher_disagreement_score":0.013803323,"about_ca_system_score_codex":0.000028200066,"about_ca_system_score_gemma":0.00011774476,"threshold_uncertainty_score":0.37664816},"labels":[],"label_agreement":null},{"id":"W2588646505","doi":"10.1093/cid/cix164","title":"Cardiovascular Complications and Short-term Mortality Risk in Community-Acquired Pneumonia","year":2017,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":221,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; University of Ottawa","funders":"","keywords":"Medicine; Atrial fibrillation; Internal medicine; Stroke (engine); Heart failure; Myocardial infarction; Hazard ratio; Pneumonia; Proportional hazards model; Cardiology; Thrombosis; Confidence interval","score_opus":0.092838621031478,"score_gpt":0.4110788295888587,"score_spread":0.3182402085573807,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2588646505","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945976,0.00042686774,0.00007731854,0.00028513666,0.000316192,0.0004994385,0.00009271882,0.00016567472,0.003539066],"genre_scores_gemma":[0.9980456,0.001149037,0.000002742289,0.00045327016,0.00017081632,0.00010752041,0.000029454584,0.000023136745,0.000018400246],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99804616,0.00061685365,0.00056793104,0.00034819925,0.00017450869,0.0002463618],"domain_scores_gemma":[0.9969541,0.0004218152,0.00016068206,0.0019235992,0.00011389312,0.00042591154],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0007054248,0.00019430864,0.00064198376,0.00009491559,0.0013936829,0.00011275094,0.00018643025,0.00017037817,0.000013387261],"category_scores_gemma":[0.0018466166,0.00017437295,0.00053576037,0.00008604925,0.00094677013,0.00016371993,0.00020258402,0.0005786508,0.000029616947],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00000714231,0.0012635294,0.9876434,0.000060444938,0.00045464883,0.000038222595,0.00003168521,0.000013532496,0.00013581685,0.000051888044,0.000039400486,0.010260259],"study_design_scores_gemma":[0.001293707,0.00026806066,0.9943104,0.000090933594,0.0008182874,0.000022885599,0.00002860288,0.000098466844,0.000005105672,0.00058081787,0.0023038823,0.00017884484],"about_ca_topic_score_codex":0.0004986142,"about_ca_topic_score_gemma":0.00061450544,"teacher_disagreement_score":0.010081414,"about_ca_system_score_codex":0.000053224052,"about_ca_system_score_gemma":0.00010253124,"threshold_uncertainty_score":0.99990636},"labels":[],"label_agreement":null},{"id":"W2590114688","doi":"10.1097/ipc.0000000000000487","title":"Overuse of Antibiotics in Treatment of Community-Acquired Pneumonia Requiring Hospitalization","year":2017,"lang":"en","type":"article","venue":"Infectious Diseases in Clinical Practice","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Community-acquired pneumonia; Mycoplasma pneumoniae; Pneumonia; Streptococcus pneumoniae; Intensive care medicine; Intensive care unit; Antibiotics; Pseudomonas aeruginosa; Regimen; Mortality rate; Internal medicine; Microbiology","score_opus":0.08457459613621247,"score_gpt":0.465192600105611,"score_spread":0.3806180039693985,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2590114688","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99355,0.00012658046,0.00004945223,0.0005754739,0.00050610764,0.00043403744,0.000021180602,0.0000354172,0.0047017653],"genre_scores_gemma":[0.99832004,0.0012439872,0.0000417207,0.00024578092,0.00009304895,0.0000036707327,0.000009266752,0.00002052389,0.000021980864],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9977723,0.0006092876,0.0010553569,0.00017867064,0.00020437215,0.00018006489],"domain_scores_gemma":[0.9955307,0.00218373,0.00093974173,0.0010017691,0.00021552829,0.00012851537],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0006787054,0.00015416823,0.0005972162,0.00018653444,0.00018635952,0.000027086233,0.00013678372,0.00017979823,0.000012815088],"category_scores_gemma":[0.015409787,0.00014072575,0.00021296767,0.00018783048,0.00044345143,0.000457262,0.00008418677,0.0002513971,0.0000065920685],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002532771,0.010500719,0.98000693,0.0001445296,0.000113689515,0.00008078552,0.0002511246,0.00013543027,0.0014154933,0.00021554802,0.0000100492325,0.0068724463],"study_design_scores_gemma":[0.0037412778,0.0026965013,0.9904313,0.0002548588,0.00032663337,0.000028883414,0.0002018376,0.00014307933,0.00035400988,0.00029557955,0.0014095687,0.000116482624],"about_ca_topic_score_codex":0.0010269375,"about_ca_topic_score_gemma":0.0003256344,"teacher_disagreement_score":0.014731081,"about_ca_system_score_codex":0.00015790918,"about_ca_system_score_gemma":0.00020850572,"threshold_uncertainty_score":0.99288386},"labels":[],"label_agreement":null},{"id":"W2592053233","doi":"10.1016/j.vaccine.2017.02.035","title":"A randomized study of fever prophylaxis and the immunogenicity of routine pediatric vaccinations","year":2017,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"inVentiv Health Clinical","funders":"Drexel University; Pfizer","keywords":"Immunogenicity; Medicine; Vaccination; Randomized controlled trial; Immunology; Virology; Pediatrics; Intensive care medicine; Antibody; Internal medicine","score_opus":0.014825090281523134,"score_gpt":0.28981367896714344,"score_spread":0.2749885886856203,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2592053233","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961846,0.00036331054,0.000021608095,0.0014267574,0.00010698536,0.0015299453,0.0000046269656,0.0000145710355,0.00034762407],"genre_scores_gemma":[0.99928004,0.00017863199,0.000012293876,0.000043076514,0.00012224544,0.000066912486,0.0000010324101,0.000009209442,0.00028655923],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99899894,0.00016870076,0.00043416236,0.00013631795,0.00016123861,0.00010064585],"domain_scores_gemma":[0.998443,0.00025663024,0.00041308586,0.0006139118,0.00023160297,0.000041782103],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008030913,0.00010667917,0.0006517535,0.00012488454,0.00028853814,0.000013300182,0.0001318493,0.00004913487,0.000048489826],"category_scores_gemma":[0.0011041599,0.000055961456,0.00014398343,0.00014149501,0.00003351041,0.000062303494,0.00010106247,0.00014428423,0.0000022901609],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.03157841,0.0013654062,0.9579773,0.00016568699,0.0006365511,0.000006978921,0.0018609492,0.000006048691,0.004579403,0.0003731983,0.00011673352,0.0013333684],"study_design_scores_gemma":[0.31761172,0.0004290147,0.68022794,0.000012475554,0.00074245204,0.000016535236,0.0001548703,0.000074271484,0.000541576,0.000081448554,0.000054481978,0.000053176504],"about_ca_topic_score_codex":0.00034781202,"about_ca_topic_score_gemma":0.0000481704,"teacher_disagreement_score":0.28603333,"about_ca_system_score_codex":0.000009911936,"about_ca_system_score_gemma":0.000048885828,"threshold_uncertainty_score":0.22820419},"labels":[],"label_agreement":null},{"id":"W2596130729","doi":"10.1056/nejm-jw.na43519","title":"Community-Acquired Pneumonia Is Associated with Risk for Heart Failure","year":2017,"lang":"en","type":"article","venue":"Journal watch","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Community-acquired pneumonia; Heart failure; Pneumonia; Intensive care medicine; Internal medicine; Cardiology","score_opus":0.029928626484576882,"score_gpt":0.3127300711571137,"score_spread":0.2828014446725368,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2596130729","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9103619,0.000014995964,0.00012633103,0.08855504,0.00024008602,0.00024237338,0.000037234186,0.000040635467,0.00038144932],"genre_scores_gemma":[0.9952349,0.00005454722,0.00024250157,0.0016033528,0.00033969944,0.000016089194,0.0000060582524,0.000032735345,0.0024701196],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989953,0.00014276091,0.00023499421,0.00010166878,0.0002308382,0.00029443606],"domain_scores_gemma":[0.99840647,0.00010950232,0.00037674536,0.00052094634,0.00034287194,0.00024346198],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00066657655,0.00014818343,0.00034477547,0.00005393504,0.003801075,0.00019957853,0.00019308698,0.00014054326,0.00006456811],"category_scores_gemma":[0.0005562053,0.00009852721,0.00019552406,0.000059651175,0.00011879502,0.0001955539,0.00003823707,0.0008000545,0.000025122688],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031354386,0.0007584565,0.72132003,0.000052341846,0.00094470294,0.0000952239,0.0017286603,0.000009627424,0.11195941,0.000010441968,0.16165216,0.0011553757],"study_design_scores_gemma":[0.0055445675,0.0028877496,0.5713134,0.0004611489,0.00060628104,0.0017179637,0.0005487315,0.00010502311,0.004676275,0.0006289307,0.41121426,0.00029569393],"about_ca_topic_score_codex":0.000057800044,"about_ca_topic_score_gemma":0.00027245027,"teacher_disagreement_score":0.2495621,"about_ca_system_score_codex":0.00013061089,"about_ca_system_score_gemma":0.00013838506,"threshold_uncertainty_score":0.99749583},"labels":[],"label_agreement":null},{"id":"W2599368770","doi":"10.1155/2017/2397429","title":"Invasive Pneumococcal Disease: Still Lots to Learn and a Need for Standardized Data Collection Instruments","year":2017,"lang":"en","type":"article","venue":"Canadian Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta; Provincial Laboratory of Public Health; Dalhousie University","funders":"Merck Canada; Canada Research Chairs; Government of Canada; Faculty of Medicine and Dentistry, University of Alberta; Merck; Eli Lilly and Company; University of Alberta; Pfizer","keywords":"Medicine; Comorbidity; Pneumonia; Stroke (engine); Population; Bacteremia; Disease; Pulmonary embolism; Meningitis; Intensive care medicine; Emergency medicine; Internal medicine; Pediatrics","score_opus":0.06129959523782986,"score_gpt":0.3295017493989159,"score_spread":0.26820215416108606,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2599368770","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9896133,0.00015883773,0.00022822806,0.007028453,0.0008579058,0.0009882082,0.00047797122,0.000023764691,0.0006233581],"genre_scores_gemma":[0.9931967,0.000047771257,0.00011374846,0.005143428,0.0006869808,0.00004901177,0.000019807025,0.00004463977,0.00069785846],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.99852306,0.00007193411,0.00031315204,0.00036307072,0.00025161915,0.00047715334],"domain_scores_gemma":[0.9957139,0.000046875302,0.00018550406,0.00081362715,0.00031876646,0.0029213368],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00050983025,0.00019263603,0.00031028854,0.00048138996,0.0019909383,0.00041461398,0.00033965884,0.00011452659,0.000072963245],"category_scores_gemma":[0.0020909705,0.00017642658,0.00008296986,0.00011341292,0.00014703996,0.0003940441,0.000097538315,0.00036641752,0.00001707652],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017136758,0.00014244014,0.8203511,0.00023921193,0.00063498225,0.0012949542,0.0004706635,0.000022626979,0.052157786,0.00018754516,0.08069213,0.042092852],"study_design_scores_gemma":[0.003061302,0.00049994135,0.39509788,0.00017880095,0.00015724881,0.00023702359,0.000096219024,0.00005298625,0.00018248876,0.000079479556,0.60015994,0.00019668411],"about_ca_topic_score_codex":0.0010170152,"about_ca_topic_score_gemma":0.034816574,"teacher_disagreement_score":0.51946783,"about_ca_system_score_codex":0.0005234986,"about_ca_system_score_gemma":0.0049846997,"threshold_uncertainty_score":0.99930835},"labels":[],"label_agreement":null},{"id":"W2602579280","doi":"10.1093/pch/21.2.65","title":"Time to reconsider routine high-dose amoxicillin for community-acquired pneumonia in all Canadian children","year":2016,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Health Services; Alberta Children's Hospital; University of Calgary","funders":"","keywords":"Amoxicillin; Pneumonia; Medicine; Community-acquired pneumonia; Intensive care medicine; Pediatrics; Internal medicine; Antibiotics; Microbiology; Biology","score_opus":0.026468484883433598,"score_gpt":0.2894126664352414,"score_spread":0.26294418155180777,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2602579280","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8611157,0.00026287365,0.0000638424,0.13439244,0.00034671967,0.0023129438,0.0006081783,0.00013339864,0.00076391257],"genre_scores_gemma":[0.9613065,0.00034038376,0.00030009533,0.03649796,0.0007055042,0.00012395388,0.00015551428,0.00007234591,0.000497723],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9974622,0.00030581935,0.00067498954,0.00036789512,0.00020554343,0.0009835231],"domain_scores_gemma":[0.99736583,0.0003776445,0.00016330552,0.0006326426,0.00012790963,0.00133265],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012401574,0.0002794656,0.00059590215,0.0008341503,0.0005286597,0.000019232599,0.00019417993,0.00020583074,0.00016593836],"category_scores_gemma":[0.00057412323,0.00021563456,0.0001364068,0.00062907086,0.000063472515,0.00008507259,0.00005589915,0.00040578507,0.0005856872],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004025414,0.0020845274,0.831266,0.0004539813,0.0003733971,0.00006142786,0.0048939157,0.00012367037,0.0045229206,0.0008101248,0.08401644,0.07099104],"study_design_scores_gemma":[0.0040174797,0.0010764436,0.9284721,0.00018879582,0.000058140162,0.00009286636,0.000039552768,0.000021232196,0.00005275241,0.00016774758,0.06545214,0.0003607415],"about_ca_topic_score_codex":0.04784892,"about_ca_topic_score_gemma":0.091035746,"teacher_disagreement_score":0.100190826,"about_ca_system_score_codex":0.00094765634,"about_ca_system_score_gemma":0.0012649631,"threshold_uncertainty_score":0.95849156},"labels":[],"label_agreement":null},{"id":"W2604745590","doi":"10.1093/pch/6.suppl_b.9b","title":"Development of a pneumococcal conjugate vaccine","year":2001,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Conjugate; Immunogenicity; Pneumococcal conjugate vaccine; Conjugate vaccine; Medicine; Virology; Streptococcus pneumoniae; Immunology; Microbiology; Antigen; Biology; Mathematics; Antibiotics","score_opus":0.019172370908283,"score_gpt":0.2953161246257979,"score_spread":0.27614375371751493,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2604745590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97889477,0.001359329,0.0006545237,0.011766806,0.00039511325,0.0006190703,0.000009398804,0.00012605682,0.006174912],"genre_scores_gemma":[0.9923142,0.0020524024,0.001219299,0.0036811566,0.000525961,0.000022176291,0.000027970871,0.000026964304,0.00012985496],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984697,0.000041288928,0.00062645593,0.00022378638,0.000258504,0.0003802401],"domain_scores_gemma":[0.9990236,0.000044386943,0.0002130883,0.00024052814,0.000106378284,0.00037201203],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040123175,0.00014879945,0.00040158327,0.00026128136,0.00025336276,0.0000054072248,0.0000692807,0.00008622758,0.00008158859],"category_scores_gemma":[0.0000690619,0.00012398713,0.00009614268,0.0005835102,0.000019742916,0.000037669553,0.000037998587,0.0002995688,0.00008326854],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018575501,0.0017947921,0.8958098,0.0009278232,0.00017605616,0.00007496784,0.0030585304,0.00002425127,0.007266499,0.0011536102,0.0020884003,0.08743951],"study_design_scores_gemma":[0.001735267,0.0003405163,0.6102682,0.00007725379,0.000041730476,0.0002190333,0.00008457322,0.00003058482,0.0002638012,0.000030909843,0.38676065,0.00014752896],"about_ca_topic_score_codex":0.00001980695,"about_ca_topic_score_gemma":0.000053330878,"teacher_disagreement_score":0.38467225,"about_ca_system_score_codex":0.00013609254,"about_ca_system_score_gemma":0.0007933794,"threshold_uncertainty_score":0.50560486},"labels":[],"label_agreement":null},{"id":"W2605013043","doi":"10.1093/pch/6.suppl_b.14b","title":"Pneumococcal conjugate vaccine: From the petri dish to clinical practice","year":2001,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Children's Hospital Research Institute of Manitoba","funders":"","keywords":"Pneumococcal conjugate vaccine; Conjugate; Pneumococcal disease; Medicine; Conjugate vaccine; Pneumococcal infections; Virology; Immunology; Intensive care medicine; Streptococcus pneumoniae; Immunization; Biology; Microbiology; Antigen; Antibiotics; Mathematics","score_opus":0.02724466304129964,"score_gpt":0.36697324006050186,"score_spread":0.3397285770192022,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2605013043","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.49997863,0.002584588,0.00071847514,0.48345336,0.0030264761,0.0015811486,0.00009280323,0.0002602727,0.008304215],"genre_scores_gemma":[0.79700434,0.011555323,0.0005076698,0.17999934,0.010534165,0.000050094448,0.00007030835,0.0000610262,0.00021775105],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.99709463,0.00043061905,0.0009170923,0.00050563284,0.00046201365,0.0005900192],"domain_scores_gemma":[0.99589896,0.0019735296,0.00030761547,0.0006894178,0.00021697364,0.0009134772],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016200665,0.00022829403,0.0005136441,0.00012441826,0.0006172534,0.000051863073,0.00021821706,0.00017101722,0.00011413592],"category_scores_gemma":[0.0036110936,0.00015367326,0.00023606814,0.000991655,0.000039539897,0.000120019795,0.000110281595,0.0012056759,0.0007232289],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023488399,0.0008613117,0.9257959,0.000027400118,0.00010190106,0.000106634085,0.00048190446,0.000013112418,0.000028013324,0.00028904565,0.054103646,0.017956257],"study_design_scores_gemma":[0.00090977934,0.00045445786,0.48929632,0.000023378067,0.000096868,0.00013414244,0.00011383142,0.000015734213,0.0000010610008,0.000033859073,0.5088231,0.00009749776],"about_ca_topic_score_codex":0.00046075467,"about_ca_topic_score_gemma":0.00020027651,"teacher_disagreement_score":0.45471942,"about_ca_system_score_codex":0.00014608636,"about_ca_system_score_gemma":0.00062751386,"threshold_uncertainty_score":0.92958856},"labels":[],"label_agreement":null},{"id":"W2606287081","doi":"10.1016/j.jegh.2017.04.001","title":"Investigation of OMNIgene·SPUTUM performance in delayed tuberculosis testing by smear, culture, and Xpert MTB/RIF assays in Uganda","year":2017,"lang":"en","type":"article","venue":"Journal of Epidemiology and Global Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Outotec (Canada)","funders":"University of California, San Francisco","keywords":"Sputum; Medicine; Tuberculosis; Mycobacterium tuberculosis; Liquid culture; Microbiology; Internal medicine; Veterinary medicine; Pathology; Biology","score_opus":0.06359747881282106,"score_gpt":0.38332320705354755,"score_spread":0.3197257282407265,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2606287081","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9879039,0.004043698,0.00004238588,0.00738723,0.00014304087,0.000107309876,0.000009794184,0.0000031480818,0.00035951132],"genre_scores_gemma":[0.99206716,0.004505306,0.0007119138,0.0026272025,0.000073090756,0.0000016851417,0.0000021278263,0.0000033547979,0.000008166229],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983557,0.00032837433,0.00086009334,0.0001339734,0.000074064345,0.00024783483],"domain_scores_gemma":[0.9984792,0.000269474,0.0007927771,0.00011631609,0.00010835458,0.0002338739],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0029819522,0.00010282072,0.0006180411,0.00008324917,0.00018907858,0.0000045944857,0.000059587106,0.00017700903,0.0000015425867],"category_scores_gemma":[0.0026159522,0.000074009244,0.000038884602,0.00010624416,0.00023088155,0.00014750341,0.000025423866,0.00038791992,3.3931724e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000075598575,0.00003319278,0.9915611,0.00010633789,0.000021244377,0.000007563824,0.00012671437,0.000021342148,0.00082867086,0.00010274085,0.00063080597,0.006484668],"study_design_scores_gemma":[0.0010776666,0.0012707171,0.99399436,0.00044316667,0.000018301589,0.00048122107,0.000054304386,0.0006789647,0.000046547695,0.0010770474,0.00080331735,0.000054376804],"about_ca_topic_score_codex":0.00071887573,"about_ca_topic_score_gemma":0.00032025998,"teacher_disagreement_score":0.006430291,"about_ca_system_score_codex":0.00013069117,"about_ca_system_score_gemma":0.00027398692,"threshold_uncertainty_score":0.31317282},"labels":[],"label_agreement":null},{"id":"W2606850629","doi":"10.1016/j.heliyon.2017.e00291","title":"Self-assembled particulate PsaA as vaccine against Streptococcus pneumoniae infection","year":2017,"lang":"en","type":"article","venue":"Heliyon","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Public Health Agency of Canada","keywords":"Microbiology; Antigenicity; Bacterial adhesin; Streptococcus pneumoniae; Virulence; Antigen; Escherichia coli; Biology; Monoclonal antibody; Polyhydroxybutyrate; Serotype; Chemistry; Antibody; Bacteria; Biochemistry; Immunology","score_opus":0.01658837959289823,"score_gpt":0.30598025478416485,"score_spread":0.28939187519126663,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2606850629","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9761152,0.00012384533,0.000026388188,0.0022229645,0.0007427089,0.0006194699,0.000002130534,0.00042275517,0.019724496],"genre_scores_gemma":[0.99678195,0.0012422283,0.00002093031,0.0008208583,0.0004603617,0.000107675194,0.0000070700835,0.000038983475,0.000519976],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99862075,0.000053635034,0.00032770747,0.00036524492,0.00024263146,0.00039003987],"domain_scores_gemma":[0.998355,0.000028583268,0.000226387,0.0009365074,0.00016590225,0.00028762606],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001779946,0.0002380946,0.00034127245,0.00014239515,0.00081024825,0.0001316499,0.00011033061,0.00019681547,0.00010367936],"category_scores_gemma":[0.00018470806,0.0001977736,0.00018933555,0.00011539732,0.000018623829,0.0002593138,0.000079626494,0.00032911703,0.0011639185],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029903233,0.00038350973,0.64048404,0.0003244238,0.00014975108,0.000157539,0.00010176144,0.000028043936,0.35429427,0.00013141597,0.0001711734,0.003744171],"study_design_scores_gemma":[0.0021609496,0.00050895516,0.8532571,0.00037334798,0.00022201164,0.00009704811,0.000015511105,0.0002304872,0.040863745,0.000047652564,0.10195224,0.00027094904],"about_ca_topic_score_codex":0.000037498943,"about_ca_topic_score_gemma":0.0001214654,"teacher_disagreement_score":0.31343052,"about_ca_system_score_codex":0.00012065952,"about_ca_system_score_gemma":0.00013720391,"threshold_uncertainty_score":0.99961376},"labels":[],"label_agreement":null},{"id":"W2606914681","doi":"10.1084/jem.20161621","title":"Splenic Ly6Ghigh mature and Ly6Gint immature neutrophils contribute to eradication of <i>S. pneumoniae</i>","year":2017,"lang":"en","type":"article","venue":"The Journal of Experimental Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":232,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institutes of Health; Canadian Institutes of Health Research; Alberta Innovates - Health Solutions; Heart and Stroke Foundation of Canada","keywords":"Spleen; Streptococcus pneumoniae; Immunology; Biology; Marginal zone; Red pulp; Antibody; Macrophage; White pulp; Microbiology; B cell; In vitro","score_opus":0.01595561407560357,"score_gpt":0.3209823655198693,"score_spread":0.3050267514442657,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2606914681","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9467184,0.004799397,0.00004010949,0.04695524,0.00059873314,0.0003103234,0.0000068488425,0.000008386985,0.00056258944],"genre_scores_gemma":[0.9967837,0.0005638035,0.000048626676,0.0017970332,0.00066680723,0.0000040329014,0.0000015527411,0.000015300922,0.000119194265],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988206,0.000061515195,0.00048071257,0.00010089617,0.00036995867,0.00016629057],"domain_scores_gemma":[0.99838674,0.000074989395,0.0006345845,0.00045030809,0.00019074636,0.00026262272],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047775396,0.00015559103,0.0004894436,0.00012412113,0.00026427105,0.000013529496,0.00024223192,0.00008589785,0.000052200325],"category_scores_gemma":[0.00018377081,0.00008196639,0.00008319376,0.00007814876,0.0003755648,0.00011705167,0.00006936061,0.00036362777,0.0000037143068],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005646272,0.000110237626,0.0013567794,0.000026980282,0.00010857342,0.000037243564,0.0012169738,0.0000024040294,0.994034,0.0001855671,0.0020051722,0.0003514301],"study_design_scores_gemma":[0.009065776,0.008193655,0.39378393,0.0020850287,0.000847533,0.008279535,0.0024682886,0.000030552234,0.5456892,0.00022787007,0.029068105,0.00026052727],"about_ca_topic_score_codex":0.000024796673,"about_ca_topic_score_gemma":0.0000018517366,"teacher_disagreement_score":0.4483448,"about_ca_system_score_codex":0.00006114011,"about_ca_system_score_gemma":0.000057416066,"threshold_uncertainty_score":0.33424926},"labels":[],"label_agreement":null},{"id":"W2607047552","doi":"10.1097/inf.0000000000001607","title":"The Nasopharyngeal Microbiota of Children With Respiratory Infections in Botswana","year":2017,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of Allergy and Infectious Diseases","keywords":"Streptococcus pneumoniae; Pneumonia; Moraxella catarrhalis; Haemophilus influenzae; Odds ratio; Moraxella; Haemophilus; Respiratory infection; Biology; Internal medicine; Immunology; Medicine; Respiratory system; Microbiology; Antibiotics; Bacteria","score_opus":0.010078732134939214,"score_gpt":0.26545148159867893,"score_spread":0.2553727494637397,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2607047552","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99494493,0.00092267164,0.000025088304,0.001497496,0.0004982148,0.00046658306,0.000016663218,0.000035063338,0.0015932774],"genre_scores_gemma":[0.9971976,0.0009651962,0.0000025329812,0.00029323285,0.0013757702,0.000026487156,9.939196e-7,0.000028180077,0.0001099926],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99851936,0.00017819702,0.00043972855,0.0001782403,0.00030971016,0.00037477398],"domain_scores_gemma":[0.9979486,0.00016798786,0.000564953,0.00078980566,0.00022635881,0.0003022901],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00064956525,0.0002038898,0.00026125828,0.0002647567,0.0028492354,0.00018033644,0.00032461816,0.00007583258,0.000034246466],"category_scores_gemma":[0.0004813267,0.00010391749,0.00022829283,0.00030087217,0.0004185766,0.00019360018,0.00008691738,0.0008892403,0.000021833455],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010839159,0.0003539512,0.9972586,0.000017908296,0.00014446238,0.000047640355,0.00005585782,0.00020435128,0.0002915878,0.00006360588,0.00088853645,0.0005651145],"study_design_scores_gemma":[0.0021762964,0.00043772397,0.99386847,0.000036344354,0.0006030087,0.0012692085,0.000021799937,0.000016744587,0.000019803156,0.00019616014,0.0012219864,0.00013244119],"about_ca_topic_score_codex":0.00009126203,"about_ca_topic_score_gemma":0.00016571053,"teacher_disagreement_score":0.0033901099,"about_ca_system_score_codex":0.00012887083,"about_ca_system_score_gemma":0.0009040348,"threshold_uncertainty_score":0.9984489},"labels":[],"label_agreement":null},{"id":"W2607175605","doi":"10.1007/s40264-017-0539-9","title":"Macrolides, Digoxin Toxicity and the Risk of Sudden Death: A Population-Based Study","year":2017,"lang":"en","type":"article","venue":"Drug Safety","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital; Sunnybrook Health Science Centre; Institute for Clinical Evaluative Sciences; Sunnybrook Hospital; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Azithromycin; Digoxin; Erythromycin; Clarithromycin; Cefuroxime; Odds ratio; Internal medicine; Population; Sudden death; Macrolide Antibiotics; Relative risk; Confidence interval; Antibiotics; Heart failure","score_opus":0.013396318368599773,"score_gpt":0.29041003223629397,"score_spread":0.2770137138676942,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2607175605","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958889,0.000039535644,0.00004430635,0.0017807063,0.00009482912,0.0005632844,0.00003565414,0.000023818753,0.0015290019],"genre_scores_gemma":[0.9994429,0.000015775755,0.00001680113,0.0001761681,0.00007015931,0.00001678028,0.00000458941,0.00000869413,0.00024814234],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992157,0.00015587335,0.00022257317,0.00014205975,0.00015571808,0.00010805611],"domain_scores_gemma":[0.9988789,0.00023817224,0.00020001532,0.0005669446,0.000053981956,0.00006196338],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005929012,0.000092260634,0.0002552963,0.000038461636,0.0006288276,0.000023632028,0.00009779306,0.00003595244,0.000024770017],"category_scores_gemma":[0.0004300361,0.000053504285,0.00008797296,0.000038409897,0.000108317465,0.00004687313,0.00004581755,0.00015132077,0.00000443719],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020253294,0.00022813084,0.9977747,0.000015162069,0.00007611686,0.000005218787,0.00038184747,0.000029293695,0.00023715277,0.00019168435,0.000026717627,0.0008314068],"study_design_scores_gemma":[0.004252283,0.00006916442,0.99372405,0.000025361469,0.00021563168,0.0000041487597,0.00015367402,0.00039856145,0.00023366864,0.00016288419,0.00070321135,0.00005738461],"about_ca_topic_score_codex":0.0020684646,"about_ca_topic_score_gemma":0.0011212212,"teacher_disagreement_score":0.0040507093,"about_ca_system_score_codex":0.000023559172,"about_ca_system_score_gemma":0.00004636486,"threshold_uncertainty_score":0.48364973},"labels":[],"label_agreement":null},{"id":"W2610363069","doi":"10.3201/eid2307.161858","title":"Concurrent Infection with Hepatitis C Virus and<i>Streptococcus pneumoniae</i>","year":2017,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta; Provincial Laboratory of Public Health; Dalhousie University","funders":"Pfizer Canada; Merck Canada; Dalhousie University; Government of Canada; Eli Lilly and Company; University of Alberta; Pfizer","keywords":"Medicine; Streptococcus pneumoniae; Hepatitis C virus; Internal medicine; Population; Hepatitis C; Cohort; Immunology; Virus; Biology; Microbiology","score_opus":0.01091464660086954,"score_gpt":0.2850497352994742,"score_spread":0.27413508869860465,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2610363069","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99295133,0.00020888746,0.00025535407,0.0006297004,0.00067606784,0.0004897543,0.000037466725,0.00043402988,0.0043173917],"genre_scores_gemma":[0.99793667,0.0009168284,0.0000021374728,0.00035652553,0.00034061284,0.00017658614,0.000016243508,0.000039091312,0.00021532805],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99880385,0.00004815598,0.00021797617,0.0003882047,0.00022764411,0.0003141496],"domain_scores_gemma":[0.9987271,0.000037179005,0.00021338488,0.0005381577,0.00014045271,0.00034374936],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00006607359,0.0002630594,0.00032499855,0.00015912557,0.0013271038,0.00018388299,0.00006465727,0.000078331796,0.00011207724],"category_scores_gemma":[0.00016471434,0.00021307245,0.0001258848,0.000104136816,0.00031176637,0.00031746135,0.00007514148,0.00023456643,0.000051639425],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008032532,0.00028149702,0.9821927,0.000097984346,0.00014308661,0.00006950167,0.000052713276,0.000023755505,0.0032487337,0.00019120457,0.00034484765,0.013345923],"study_design_scores_gemma":[0.0014083849,0.0006398014,0.9691348,0.0001859088,0.00037147285,0.00016549071,0.0000070457318,0.00012224576,0.00045547832,0.00006247244,0.027175533,0.00027137663],"about_ca_topic_score_codex":0.0011247923,"about_ca_topic_score_gemma":0.001172449,"teacher_disagreement_score":0.026830684,"about_ca_system_score_codex":0.00008781077,"about_ca_system_score_gemma":0.000119062766,"threshold_uncertainty_score":0.99997306},"labels":[],"label_agreement":null},{"id":"W2611141738","doi":"10.1056/id200408090000005","title":"Synthetic H. influenzae Vaccine Looks Good","year":2004,"lang":"en","type":"article","venue":"Journal watch","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Haemophilus influenzae; Virology; Medicine; Hib vaccine; Microbiology; Antigen; Family medicine; Immunization; Immunology; Conjugate vaccine; Biology","score_opus":0.012158863996381145,"score_gpt":0.27798669274280313,"score_spread":0.26582782874642197,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2611141738","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95029706,0.00014778713,0.00035395636,0.043506645,0.0004989178,0.00011784319,0.0000013548104,0.00006157179,0.005014884],"genre_scores_gemma":[0.9945544,0.00019590529,0.00015474214,0.0027578047,0.0006776107,0.0000041084504,6.20419e-7,0.000022336677,0.001632478],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9990938,0.000023196095,0.0002894283,0.00011784179,0.00022743821,0.00024832494],"domain_scores_gemma":[0.99928975,0.000020029622,0.000087585286,0.00019572568,0.00012107594,0.00028582665],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018258845,0.00011903384,0.0002163459,0.000094833864,0.00023689838,0.000036887363,0.00006979477,0.00009307264,0.00022426243],"category_scores_gemma":[0.00008409448,0.00008200703,0.000156061,0.00015882842,0.000020514493,0.000090652116,0.000019072273,0.0005571523,0.00033461713],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028901768,0.0021553882,0.17559883,0.00019658983,0.0008083297,0.0039853984,0.0019014505,0.0016536894,0.7816557,0.001704899,0.014115054,0.015935602],"study_design_scores_gemma":[0.00962923,0.0018221103,0.1291099,0.0007091644,0.0005428759,0.03960006,0.0002654682,0.000014324353,0.03205959,0.0062430636,0.77954006,0.00046416838],"about_ca_topic_score_codex":0.000009613599,"about_ca_topic_score_gemma":0.000008828197,"teacher_disagreement_score":0.76542497,"about_ca_system_score_codex":0.00019681672,"about_ca_system_score_gemma":0.00018100739,"threshold_uncertainty_score":0.4300938},"labels":[],"label_agreement":null},{"id":"W2612025098","doi":"10.1080/21645515.2017.1320006","title":"Long-term trends in invasive pneumococcal disease in Manitoba, Canada","year":2017,"lang":"en","type":"article","venue":"Human Vaccines & Immunotherapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"George & Fay Yee Centre for Healthcare Innovation; Manitoba Health; Government of Manitoba; University of Manitoba","funders":"","keywords":"Medicine; Serotype; Incidence (geometry); Vaccination; Case fatality rate; Population; Pneumococcal polysaccharide vaccine; Pneumococcal conjugate vaccine; Pneumococcal disease; Demography; Epidemiology; Public health; Disease burden; Pediatrics; Streptococcus pneumoniae; Environmental health; Immunology; Internal medicine; Biology","score_opus":0.04685413187085516,"score_gpt":0.3156922938059322,"score_spread":0.26883816193507704,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2612025098","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99622947,0.00057709345,0.0000013762739,0.0015465207,0.00036737093,0.00028014983,0.00001153884,0.000033118686,0.0009533435],"genre_scores_gemma":[0.997477,0.00016243377,0.0000021585208,0.0009886377,0.00018863537,0.000050210183,0.000034410237,0.000046819834,0.0010497185],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985811,0.000052005293,0.00043274596,0.00031129405,0.00020361396,0.00041924242],"domain_scores_gemma":[0.9986126,0.000039259638,0.0001678206,0.00095735333,0.00006442343,0.00015856994],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009496008,0.00026649865,0.00038202948,0.00034094776,0.00038490744,0.000083329054,0.0003215466,0.00010172005,0.00021414981],"category_scores_gemma":[0.00003203079,0.00024345989,0.00010709661,0.00015609054,0.00006593249,0.00014669953,0.00007587514,0.00038707198,0.000013074205],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000095154275,0.00027386568,0.97367144,0.00005524355,0.000057066507,0.00063083536,0.00011041592,0.000010842839,0.019516153,0.000058110858,0.00004253319,0.005478326],"study_design_scores_gemma":[0.0028413415,0.000098873905,0.99307567,0.0002064772,0.000069241316,0.000020118692,0.000041109215,0.000016440586,0.00038541283,0.00004882441,0.0029441165,0.0002523796],"about_ca_topic_score_codex":0.0966807,"about_ca_topic_score_gemma":0.91659635,"teacher_disagreement_score":0.81991565,"about_ca_system_score_codex":0.0004039047,"about_ca_system_score_gemma":0.00046466256,"threshold_uncertainty_score":0.9928006},"labels":[],"label_agreement":null},{"id":"W2613471258","doi":"10.1183/09031936.50090311","title":"“Moxifloxacin<i>versus</i>amoxicillin/clavulanic acid in outpatient acute exacerbations of COPD: MAESTRAL results”. Robert Wilson, Antonio Anzueto, Marc Miravitlles, Pierre Arvis, Jeff Alder, Daniel Haverstock, Mila Trajanovic and Sanjay Sethi.<i>Eur Respir J</i>2012; 40: 17–27.","year":2012,"lang":"en","type":"article","venue":"European Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Bayer Canada","keywords":"Medicine; Moxifloxacin; Clavulanic acid; Amoxicillin; Microbiology; Biology","score_opus":0.03103859450489123,"score_gpt":0.2845292496484668,"score_spread":0.2534906551435756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2613471258","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97429,0.0072514913,0.0002419875,0.0011773466,0.0026014417,0.0010769622,0.00032558863,0.00014594149,0.0128892],"genre_scores_gemma":[0.9875234,0.0016664858,0.00081486517,0.00378845,0.0019024728,0.000022066779,0.000083861494,0.00027928827,0.0039191255],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9932058,0.0015053962,0.0021466955,0.0007837806,0.0010289665,0.0013293511],"domain_scores_gemma":[0.9960439,0.00028018217,0.0010013545,0.0010195995,0.0004068423,0.0012480994],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0028904304,0.00079929444,0.0010495883,0.000997957,0.0006449741,0.00012604165,0.00046943958,0.000375609,0.00018924703],"category_scores_gemma":[0.0004946644,0.0007079475,0.000441605,0.0008706549,0.0006318593,0.00088701834,0.00022744344,0.0023085005,0.000111140536],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009173927,0.0054724766,0.18170568,0.0005815907,0.0017304387,0.003100218,0.01135816,0.0004414612,0.4569095,0.00028880755,0.31903794,0.010199785],"study_design_scores_gemma":[0.015634593,0.00331429,0.26698738,0.00091277045,0.0006725723,0.001448679,0.001231822,0.000050072944,0.004061097,0.000011366302,0.7047272,0.0009482165],"about_ca_topic_score_codex":0.000019432744,"about_ca_topic_score_gemma":0.00013913312,"teacher_disagreement_score":0.4528484,"about_ca_system_score_codex":0.00039091264,"about_ca_system_score_gemma":0.0005411681,"threshold_uncertainty_score":0.9999932},"labels":[],"label_agreement":null},{"id":"W2613599091","doi":"10.1016/j.vaccine.2017.04.083","title":"Exploring the acceptability of the available pneumococcal conjugate vaccines in Canadian health care professionals and immunization experts","year":2017,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Institut National de Santé Publique du Québec; Université de Montréal; McGill University Health Centre; McGill University","funders":"McGill University Health Centre","keywords":"Immunization; Immunization program; Medicine; Vaccination; Family medicine; Pneumococcal conjugate vaccine; Health care; Pneumococcal disease; Health professionals; Environmental health; Immunology; Streptococcus pneumoniae; Political science","score_opus":0.05254336589716051,"score_gpt":0.3215481966431206,"score_spread":0.2690048307459601,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2613599091","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97987163,0.0005230101,3.932929e-7,0.017874902,0.0003801246,0.00061485,0.000009847178,0.000010854836,0.00071436696],"genre_scores_gemma":[0.9989319,0.00016314667,0.0000042824436,0.00056472176,0.000070948416,0.000061066654,0.0000048775896,0.000010649198,0.0001884179],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999166,0.00009964149,0.00025689142,0.00015525664,0.00009536948,0.00022684011],"domain_scores_gemma":[0.99890447,0.00004432402,0.00013652073,0.0006778451,0.00011019088,0.00012663833],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002906478,0.000097960045,0.00021775132,0.00007574423,0.0007856174,0.000022634318,0.0001636141,0.000039274037,0.00016579141],"category_scores_gemma":[0.00028762934,0.00005106121,0.00003943293,0.000119507655,0.000025142968,0.0001690335,0.000095735995,0.00015627698,0.0000032552896],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019901836,0.000043113385,0.98808396,0.0000954187,0.000012987717,0.0000017410542,0.0028644295,0.00000424958,0.003531546,0.000046740275,0.0003527234,0.004943212],"study_design_scores_gemma":[0.00062238076,0.00005603898,0.98806673,0.0000891119,0.0000103564325,0.000010827034,0.0014342754,0.000025734576,0.0019296267,0.0000064079773,0.007697768,0.000050722916],"about_ca_topic_score_codex":0.08532138,"about_ca_topic_score_gemma":0.2555362,"teacher_disagreement_score":0.17021482,"about_ca_system_score_codex":0.00011845275,"about_ca_system_score_gemma":0.0005162947,"threshold_uncertainty_score":0.9207695},"labels":[],"label_agreement":null},{"id":"W2613701980","doi":"10.22159/ijpps.2017v9i6.18020","title":"SAFETY SIGNAL DETECTION OF CARDIAC DISORDERS ADVERSE DRUG EVENTS FOR AZITHROMYCIN IN PEDIATRIC POPULATION USING HEALTH CANADA ADVERSE EVENT REPORTING SYSTEM DATABASE","year":2017,"lang":"en","type":"article","venue":"International Journal of Pharmacy and Pharmaceutical Sciences","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Azithromycin; Adverse Event Reporting System; Medicine; Adverse effect; Population; Pharmacovigilance; Intensive care medicine; Internal medicine; Pediatrics; Environmental health; Biology; Antibiotics","score_opus":0.06666226423887604,"score_gpt":0.4337731579911141,"score_spread":0.36711089375223804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2613701980","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955387,0.00028584062,0.0006975575,0.0014479125,0.0016797541,0.0002689463,0.000047699657,0.0000035441049,0.0000300122],"genre_scores_gemma":[0.9990875,0.00034383134,0.00011919018,0.00009032785,0.00034555464,0.0000026992277,0.0000032189305,0.0000044079175,0.0000032801015],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99803174,0.00009608654,0.0010019833,0.0001475232,0.00055548904,0.00016719247],"domain_scores_gemma":[0.9977681,0.000108218876,0.0017003975,0.000057574332,0.0001837416,0.00018196834],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019216142,0.0000906536,0.000250282,0.00018453112,0.0003462167,0.000013116187,0.00015189439,0.000016395956,0.000008663728],"category_scores_gemma":[0.0002879127,0.00007324414,0.000111664405,0.000097165,0.000075512165,0.0004002861,0.000043811913,0.00017966784,9.0626855e-8],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033631318,0.00010100254,0.971317,0.00022378501,0.00006933375,0.000020455998,0.000084030224,0.0019073271,0.012429419,0.000034921974,0.000013568292,0.013462865],"study_design_scores_gemma":[0.0050926385,0.00019246296,0.91104186,0.00067670224,0.000321339,0.0003546866,0.0006225598,0.069374084,0.0077166893,0.000046451107,0.0043467768,0.00021375214],"about_ca_topic_score_codex":0.030295946,"about_ca_topic_score_gemma":0.010186799,"teacher_disagreement_score":0.06746675,"about_ca_system_score_codex":0.0003478469,"about_ca_system_score_gemma":0.00073523185,"threshold_uncertainty_score":0.9761614},"labels":[],"label_agreement":null},{"id":"W2618654314","doi":"10.1093/cid/cix090","title":"The Diagnostic Utility of Induced Sputum Microscopy and Culture in Childhood Pneumonia","year":2017,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Wellcome Trust","keywords":"Sputum; Medicine; Pneumonia; Sputum culture; Etiology; Chest radiograph; Bacterial pneumonia; Respiratory disease; Microbiological culture; Internal medicine; Pathology; Lung; Tuberculosis; Bacteria","score_opus":0.030869343955045897,"score_gpt":0.3873242191794735,"score_spread":0.35645487522442765,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2618654314","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99634105,0.0005491202,0.0000028265217,0.0009585458,0.0005786816,0.0004250345,0.000026602445,0.00004650541,0.0010716093],"genre_scores_gemma":[0.9981867,0.0011114593,0.0000011577321,0.00038491297,0.00020806101,0.000034866545,0.0000035439,0.000012561118,0.000056705052],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998724,0.00013958914,0.00051496126,0.00028759465,0.00011868165,0.00021517559],"domain_scores_gemma":[0.9976742,0.0010517781,0.0002571221,0.00067157723,0.0000972855,0.00024802305],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0002876207,0.00014877575,0.00040535847,0.000041316078,0.00056588254,0.00006862268,0.00013644804,0.00016598216,0.000016245982],"category_scores_gemma":[0.009293701,0.000094441064,0.00019564277,0.00007666852,0.00070599705,0.00008870277,0.0001187411,0.0004149871,0.000011788128],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017620363,0.000992905,0.98909694,0.00004036775,0.000058310394,0.000020085401,0.000047156613,1.794636e-7,0.0009825083,0.000039243736,0.00033478244,0.008369871],"study_design_scores_gemma":[0.0014382487,0.0005521251,0.9939593,0.00014107978,0.00015229889,0.000011769521,0.000025935811,0.000013930245,0.00015723423,0.0010606314,0.0023908836,0.00009657286],"about_ca_topic_score_codex":0.000051734543,"about_ca_topic_score_gemma":0.00025081853,"teacher_disagreement_score":0.00900608,"about_ca_system_score_codex":0.000015230478,"about_ca_system_score_gemma":0.00016506134,"threshold_uncertainty_score":0.99905145},"labels":[],"label_agreement":null},{"id":"W2618936936","doi":"10.1371/journal.pone.0178040","title":"Phylogenetic analysis of emergent Streptococcus pneumoniae serotype 22F causing invasive pneumococcal disease using whole genome sequencing","year":2017,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Mount Sinai Hospital; Yukon University; Government of Northwest Territories; University of Manitoba; Saskatchewan Disease Control Laboratory; Queen Elizabeth II Health Sciences Centre; Ste. Anne's Hospital; Public Health Ontario; BC Centre for Disease Control; Public Health Agency of Canada","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Streptococcus pneumoniae; Serotype; Multilocus sequence typing; Biology; Phylogenetic tree; Microbiology; Antibiotic resistance; Virology; Genotype; Genetics; Antibiotics; Gene","score_opus":0.11005749962270621,"score_gpt":0.3054658143816787,"score_spread":0.19540831475897247,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2618936936","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983082,0.00013634976,0.00006920709,0.00035880491,0.000067409674,0.0006634525,0.00013258902,0.00004790902,0.00021611586],"genre_scores_gemma":[0.9992767,0.00005702979,0.00011600866,0.0001067656,0.00018118866,0.000040956842,0.000048074256,0.000038429032,0.00013487633],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99814385,0.000070546266,0.0004956811,0.00044085717,0.00046353918,0.00038551],"domain_scores_gemma":[0.99763316,0.0000416831,0.00043792254,0.0011227358,0.0003332675,0.00043120846],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014706847,0.00024910292,0.00073724706,0.00047402157,0.0005741926,0.000054004046,0.00017213338,0.00010441665,0.00016180373],"category_scores_gemma":[0.0003394647,0.00023650048,0.0003219431,0.0004379734,0.00019759909,0.00013454814,0.00015209221,0.00023117689,0.000023318835],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014373265,0.00043109656,0.40394697,0.00016770094,0.001994281,0.000088114095,0.00012918537,0.0013115417,0.59188294,0.000003431684,3.4654337e-7,0.000030018882],"study_design_scores_gemma":[0.00049451704,0.00017633596,0.93501353,0.00039282243,0.011749279,0.0000040399173,0.000110408575,0.00713358,0.04460713,0.000023373956,0.000023719194,0.00027123644],"about_ca_topic_score_codex":0.00012550589,"about_ca_topic_score_gemma":0.00016542012,"teacher_disagreement_score":0.5472758,"about_ca_system_score_codex":0.00025723464,"about_ca_system_score_gemma":0.0004662094,"threshold_uncertainty_score":0.964421},"labels":[],"label_agreement":null},{"id":"W2619091049","doi":"10.1093/cid/cix081","title":"Standardization of Laboratory Methods for the PERCH Study","year":2017,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Wellcome Trust; Alere","keywords":"Medicine; Standardization; Pneumonia; Quality assurance; Etiology; Intensive care medicine; Standard operating procedure; Pathology; Internal medicine; External quality assessment","score_opus":0.10842162669043856,"score_gpt":0.5581909807167894,"score_spread":0.4497693540263509,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2619091049","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9022104,0.0005330032,0.09001183,0.0013593044,0.0021223547,0.0025043637,0.00016831866,0.00015674262,0.00093365164],"genre_scores_gemma":[0.9987188,0.00012564255,0.00006471513,0.00040063783,0.00043124592,0.0001517638,0.0000036707697,0.00001759095,0.00008592526],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988368,0.00027976063,0.00042919433,0.0002091351,0.00012018055,0.00012490392],"domain_scores_gemma":[0.9967655,0.0015531777,0.00026478685,0.00078150816,0.0004960248,0.00013901351],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001050422,0.00010151392,0.00036251018,0.00004330912,0.0007108035,0.0000493712,0.00013068474,0.00007932219,0.000044108838],"category_scores_gemma":[0.007859351,0.00006277387,0.00028577793,0.000088204855,0.00038412583,0.0000806531,0.000058571954,0.00015277552,0.0000051796783],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054870663,0.0016222271,0.968107,0.000049979895,0.00031651405,0.0000022246545,0.000048140886,0.00003267152,0.00042166706,0.00013562875,0.00059863663,0.028610453],"study_design_scores_gemma":[0.0020539672,0.001644068,0.961359,0.000025006539,0.00094833266,0.0000010824442,0.00013446779,0.00017532788,0.00010262806,0.00027009813,0.03321026,0.00007573199],"about_ca_topic_score_codex":0.000008254758,"about_ca_topic_score_gemma":0.000017349405,"teacher_disagreement_score":0.09650837,"about_ca_system_score_codex":0.000026016678,"about_ca_system_score_gemma":0.00027153356,"threshold_uncertainty_score":0.9408945},"labels":[],"label_agreement":null},{"id":"W2619139481","doi":"10.1016/j.vaccine.2017.05.049","title":"Burden of vaccine-preventable pneumococcal disease in hospitalized adults: A Canadian Immunization Research Network (CIRN) Serious Outcomes Surveillance (SOS) network study","year":2017,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Saint John Regional Hospital; University of British Columbia; Centre Hospitalier Universitaire de Sherbrooke; McGill University Health Centre; McMaster University; Mount Sinai Hospital; Vancouver General Hospital; Ottawa Hospital; Izaak Walton Killam Health Centre; Centre hospitalier universitaire de Québec; Nova Scotia Health Authority; Dalhousie University","funders":"Canadian Institutes of Health Research; Canadian Immunization Research Network","keywords":"Medicine; Serotype; Pneumococcal disease; Pneumonia; Pneumococcal conjugate vaccine; Streptococcus pneumoniae; Intensive care unit; Immunization; Sputum; Pneumococcal vaccine; Pediatrics; Disease; Immunology; Internal medicine; Antigen; Antibiotics; Microbiology; Biology; Tuberculosis; Pathology","score_opus":0.019780789655327657,"score_gpt":0.33250836828611136,"score_spread":0.3127275786307837,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2619139481","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99242634,0.0004485382,0.000006706308,0.00396508,0.0005075545,0.002134253,0.00002652726,0.000049887527,0.00043509033],"genre_scores_gemma":[0.99819666,0.00020405569,0.000020839934,0.00009517683,0.0005469789,0.0001282239,0.000053466996,0.00005303776,0.00070156535],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99712265,0.00042201896,0.0006605807,0.00045793105,0.00039209152,0.00094475003],"domain_scores_gemma":[0.997114,0.00015166902,0.00024069707,0.0015164748,0.00041872697,0.000558416],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014867751,0.0002673591,0.0007545848,0.00033646869,0.00078701024,0.00007486712,0.000461645,0.00013135783,0.00016358227],"category_scores_gemma":[0.00091299904,0.00022877651,0.00012664484,0.0007501243,0.000026504784,0.00019685282,0.00022482833,0.00048378424,0.000037076486],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044998043,0.00036059634,0.9941204,0.00007380252,0.00012281015,0.00018207416,0.00026977045,0.0028007482,0.00012398734,0.000023866058,0.0010108824,0.0004610802],"study_design_scores_gemma":[0.005571884,0.00060016796,0.9888966,0.00032319504,0.000055776836,0.000006288791,0.0001942686,0.000904724,0.0000042376137,0.00010023257,0.0031327505,0.00020988386],"about_ca_topic_score_codex":0.13199246,"about_ca_topic_score_gemma":0.25150058,"teacher_disagreement_score":0.11950811,"about_ca_system_score_codex":0.00026047192,"about_ca_system_score_gemma":0.0005441716,"threshold_uncertainty_score":0.9329235},"labels":[],"label_agreement":null},{"id":"W2620217815","doi":"10.1097/pec.0000000000001179","title":"Assessing Severity in Pediatric Pneumonia","year":2017,"lang":"en","type":"article","venue":"Pediatric Emergency Care","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child, Adolescent and Family Mental Health","funders":"Helse Sør-Øst RHF; Akershus Universitetssykehus","keywords":"Medicine; Chest radiograph; Hypoxemia; Pneumonia; Odds ratio; Context (archaeology); Early warning score; Tachypnea; Prospective cohort study; Intensive care; Univariate analysis; Cohort; Internal medicine; Intensive care medicine; Multivariate analysis; Emergency medicine; Lung","score_opus":0.03172309426412256,"score_gpt":0.3510251219423808,"score_spread":0.3193020276782582,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2620217815","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97370785,0.0018331112,0.000015768454,0.000538839,0.0021433092,0.00027870186,0.0000105733625,0.00010003722,0.021371812],"genre_scores_gemma":[0.9931188,0.0040653935,0.000048896836,0.00006643117,0.0023339163,0.00003842103,0.000012074733,0.000031921845,0.00028411282],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983715,0.000049167138,0.00044001086,0.0004034399,0.00031589996,0.00041997465],"domain_scores_gemma":[0.99857616,0.000021147409,0.00023570479,0.00075137644,0.00020154851,0.00021406561],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016728333,0.00021964483,0.00031674534,0.00033772152,0.0006140435,0.00006698583,0.00024141769,0.00018792531,0.00023957048],"category_scores_gemma":[0.00036302768,0.0002057237,0.00019053445,0.0003681584,0.00002897144,0.0004474659,0.00011480648,0.00043861513,0.00013996466],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000004196005,0.00009298367,0.99661875,0.0003014593,0.000006480729,0.00010500391,0.0002975655,0.000005340098,0.00036316708,0.000010232272,0.0006574769,0.0015373353],"study_design_scores_gemma":[0.0005335989,0.000060539303,0.9962438,0.0000070486985,0.0002196797,0.000021454669,0.00023443355,0.000021504055,0.000023971354,0.00004509046,0.0023580538,0.00023087538],"about_ca_topic_score_codex":0.00014011333,"about_ca_topic_score_gemma":0.00017177558,"teacher_disagreement_score":0.021087699,"about_ca_system_score_codex":0.00012564882,"about_ca_system_score_gemma":0.0002981556,"threshold_uncertainty_score":0.8389169},"labels":[],"label_agreement":null},{"id":"W2622782663","doi":"10.1186/s13223-017-0200-2","title":"A case series evaluating the serological response of adult asthma patients to the 23-valent pneumococcal polysaccharide vaccine","year":2017,"lang":"en","type":"article","venue":"Allergy Asthma and Clinical Immunology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Lakehead University; NOSM University; University of Alberta","funders":"Canadian Institutes of Health Research; National Sanitarium Association","keywords":"Medicine; Vaccination; Asthma; Serology; Pneumococcal polysaccharide vaccine; Immunology; Antibody; Pneumococcal vaccine; Serotype; Antigen; Internal medicine; Streptococcus pneumoniae; Pneumococcal disease; Biology; Microbiology; Antibiotics","score_opus":0.045521030911190676,"score_gpt":0.3716516966003904,"score_spread":0.3261306656891997,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2622782663","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9698939,0.00011173916,0.000015632637,0.028654754,0.00066717,0.0004995551,0.00001250345,0.00003039301,0.000114379436],"genre_scores_gemma":[0.9965365,0.0002687182,0.000045883207,0.0024081867,0.00018997566,0.000071799026,0.0000034432428,0.000017331547,0.0004581707],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.997199,0.0009783469,0.0008408731,0.0004146507,0.00019799956,0.00036911992],"domain_scores_gemma":[0.99689955,0.0010985652,0.00039201046,0.0010709628,0.00038264488,0.00015624297],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013589351,0.0002228469,0.0005267286,0.00005804556,0.0010499842,0.000039842464,0.00035610283,0.00030549543,0.00008472855],"category_scores_gemma":[0.00569974,0.00011456948,0.0002416256,0.0000882649,0.00062842114,0.000090009584,0.00050276704,0.0006803486,0.000056706293],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.06730391,0.0046883062,0.62761635,0.00006634176,0.005053223,0.0029927879,0.0027704851,0.0000629969,0.12189068,0.003672943,0.0015882179,0.16229378],"study_design_scores_gemma":[0.0025973276,0.011265759,0.9713283,0.00004301793,0.00006716561,0.0032247033,0.00031234976,0.0001020586,0.0002159991,0.000068449306,0.010642668,0.00013218784],"about_ca_topic_score_codex":0.00010468233,"about_ca_topic_score_gemma":0.00036637622,"teacher_disagreement_score":0.34371197,"about_ca_system_score_codex":0.000020517176,"about_ca_system_score_gemma":0.000114873175,"threshold_uncertainty_score":0.80757356},"labels":[],"label_agreement":null},{"id":"W2623126700","doi":"10.1136/bmjopen-2016-015008","title":"Assessing the diagnostic accuracy of PCR-based detection of <i>Streptococcus pneumoniae</i> from nasopharyngeal swabs collected for viral studies in Canadian adults hospitalised with community-acquired pneumonia: a Serious Outcomes Surveillance (SOS) Network of the Canadian Immunization Research (CIRN) study","year":2017,"lang":"en","type":"article","venue":"BMJ Open","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Nova Scotia Health Authority; Dalhousie University","funders":"Canadian Immunization Research Network; Dalhousie University; Pfizer Canada; Public Health Agency; Canadian Institutes of Health Research; McGill University Health Centre; Public Health Agency of Canada; Pfizer; McMaster University; McGill University; Université Laval","keywords":"Streptococcus pneumoniae; Medicine; Serotype; Pneumonia; Community-acquired pneumonia; Sputum; Multiplex polymerase chain reaction; Virology; Microbiology; Pneumococcal pneumonia; Pneumococcal infections; Internal medicine; Polymerase chain reaction; Biology; Pathology; Antibiotics; Tuberculosis; Gene","score_opus":0.13248231104970937,"score_gpt":0.45664361855047725,"score_spread":0.3241613075007679,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2623126700","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9812737,0.00006453779,0.0000023195548,0.0014406547,0.00025819722,0.016617432,0.00018699036,0.000009932087,0.00014625184],"genre_scores_gemma":[0.99788696,0.000009424787,0.00001269939,0.00012156015,0.000044080927,0.001825995,0.000038601574,0.000036922836,0.0000237846],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9964069,0.0016674947,0.00070795283,0.0002586997,0.00044805167,0.000510865],"domain_scores_gemma":[0.9928328,0.0032630034,0.00078106514,0.0016426672,0.001308104,0.00017240862],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0028848196,0.00023105358,0.0008010867,0.00020400538,0.00249954,0.00016804307,0.0010777854,0.00012695628,0.0000031614957],"category_scores_gemma":[0.0077713937,0.00014636942,0.00010112125,0.00077542424,0.00066254375,0.00029544908,0.00026399532,0.0004424751,4.821551e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002917038,0.00026904835,0.99153316,0.00015825641,0.0002900843,0.000017708458,0.002799687,0.0006787852,0.003575105,0.0000030142255,0.000026210275,0.00035720848],"study_design_scores_gemma":[0.004270191,0.0012392221,0.9866893,0.0013044637,0.000099492005,0.000002934331,0.004291844,0.000519948,0.0013494658,0.000037415935,0.000042191452,0.00015347757],"about_ca_topic_score_codex":0.9486798,"about_ca_topic_score_gemma":0.9976267,"teacher_disagreement_score":0.04894693,"about_ca_system_score_codex":0.00058807386,"about_ca_system_score_gemma":0.0040596807,"threshold_uncertainty_score":0.9987991},"labels":[],"label_agreement":null},{"id":"W2625112974","doi":"10.1016/j.xphs.2017.06.003","title":"Biophysical Characterization and Thermal Stability of Pneumococcal Histidine Triad Protein D in the Presence of Zinc and Manganese","year":2017,"lang":"en","type":"article","venue":"Journal of Pharmaceutical Sciences","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"","keywords":"Isothermal titration calorimetry; Histidine; Chemistry; Differential scanning calorimetry; Zinc; Biochemistry; Organic chemistry; Amino acid","score_opus":0.07811937365614299,"score_gpt":0.3827986277401894,"score_spread":0.3046792540840464,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2625112974","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99460816,0.000043684246,0.000017172697,0.004960542,0.00005486706,0.00020411836,0.0000032541948,0.0000011849669,0.00010703258],"genre_scores_gemma":[0.9998078,0.00004792923,0.000024907162,0.000037540212,0.000073917414,0.000002102652,9.884438e-8,0.0000014088697,0.000004325319],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99911034,0.00012655031,0.00029525594,0.00008542164,0.00028511148,0.0000973391],"domain_scores_gemma":[0.99934274,0.00013619462,0.00027746952,0.00008404625,0.00008094689,0.00007859128],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012240617,0.00005565767,0.0002019168,0.000055625012,0.0001277882,0.000024861101,0.00015040221,0.000029913504,0.000015539974],"category_scores_gemma":[0.0004789524,0.000028361654,0.00003958226,0.00009989947,0.001222933,0.0002258811,0.000040271625,0.0001777873,1.3074997e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010577419,0.00019917834,0.09274694,0.000062227555,0.0000059622284,0.000009183842,0.00020144982,3.7133924e-7,0.90316,0.00021231352,4.5477805e-7,0.0032961585],"study_design_scores_gemma":[0.00076294394,0.00059356575,0.84774995,0.000100938865,0.00003759141,0.000075338765,0.0000869265,0.00083746744,0.14935978,0.00005465084,0.00030698418,0.0000338732],"about_ca_topic_score_codex":0.000008026918,"about_ca_topic_score_gemma":0.0000017770641,"teacher_disagreement_score":0.75500304,"about_ca_system_score_codex":0.000008788909,"about_ca_system_score_gemma":0.00007723237,"threshold_uncertainty_score":0.45059475},"labels":[],"label_agreement":null},{"id":"W2626287435","doi":"10.1089/pop.2017.0049","title":"Evaluation of the Impact of an Innovative Immunization Practice Model Designed to Improve Population Health: Results of the Project IMPACT Immunizations Pilot","year":2017,"lang":"en","type":"article","venue":"Population Health Management","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Waterloo; American Pharmacists Association Foundation; Washington State University","keywords":"Vaccination; Medicine; Immunization; Family medicine; Pharmacy; Health care; Influenza vaccine; Observational study; Immunology; Internal medicine","score_opus":0.13909895170223469,"score_gpt":0.48434655360369366,"score_spread":0.345247601901459,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2626287435","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9823535,0.000038186736,0.0035542776,0.005753638,0.00021163,0.0074390625,0.00012231125,0.000029169272,0.0004982152],"genre_scores_gemma":[0.99811226,0.00002922255,0.0010970545,0.0003567637,0.00003330423,0.00009866365,0.00020224522,0.000025644005,0.000044837045],"study_design_codex":"simulation_or_modeling","study_design_gemma":"observational","domain_scores_codex":[0.99609315,0.0011282173,0.0012656259,0.0002667958,0.0010038094,0.0002423798],"domain_scores_gemma":[0.993115,0.000060771657,0.003189933,0.0015640226,0.001985186,0.000085108164],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004322237,0.00018713217,0.00038418898,0.00036527816,0.00084049924,0.000028740144,0.00029366877,0.00006008977,0.000004514761],"category_scores_gemma":[0.0019837716,0.00011740097,0.00013420619,0.0011509155,0.00005935716,0.00050454476,0.00013317628,0.0001624048,5.903278e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014642123,0.0025580248,0.16531636,0.00073837524,0.0007156276,1.701947e-7,0.006180139,0.7369867,0.008254959,0.002858172,0.0004639292,0.07446334],"study_design_scores_gemma":[0.0017996953,0.0014494017,0.89212036,0.00027842075,0.00015952076,0.000001949157,0.00019372634,0.10345079,0.00015554186,0.00029382095,0.000015178562,0.00008156929],"about_ca_topic_score_codex":0.025832215,"about_ca_topic_score_gemma":0.0005135667,"teacher_disagreement_score":0.726804,"about_ca_system_score_codex":0.0011975073,"about_ca_system_score_gemma":0.0011091315,"threshold_uncertainty_score":0.98065484},"labels":[],"label_agreement":null},{"id":"W2627586041","doi":"10.1080/21548331.2017.1345280","title":"Severe viral pneumonia in adults: what is important for the ICU physician?","year":2017,"lang":"en","type":"review","venue":"Hospital Practice","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"","keywords":"Medicine; Pneumonia; Intensive care medicine; Viral pneumonia; Coronavirus disease 2019 (COVID-19); Internal medicine; Infectious disease (medical specialty); Disease","score_opus":0.039776980815210604,"score_gpt":0.3845874188152211,"score_spread":0.34481043800001054,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2627586041","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000027964494,0.98576444,0.0000070151714,0.006577712,0.0018785056,0.0035627133,0.000099255456,0.00005411014,0.0020282618],"genre_scores_gemma":[0.00010804097,0.9939135,0.000031604006,0.0029296365,0.0010885053,0.0008666356,0.000058054247,0.00010074892,0.0009032907],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99761814,0.00012912542,0.00081188924,0.0006177252,0.00034954125,0.00047359147],"domain_scores_gemma":[0.99583685,0.0011917675,0.0013590739,0.0012564554,0.00021983167,0.00013603957],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005754277,0.0005378189,0.001443063,0.00012948098,0.00042210068,0.0003258201,0.00040595053,0.00042838434,0.000021853164],"category_scores_gemma":[0.0012662066,0.00032950897,0.0008780123,0.00019684603,0.00013651872,0.0014954355,0.00011456775,0.0011845629,0.0002186733],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048520167,0.00051367003,0.000028826025,0.00611515,0.00048101213,0.0001947501,0.00028378874,1.09814856e-7,9.934148e-7,0.00009417139,0.002209516,0.9900295],"study_design_scores_gemma":[0.00071164354,0.0006535307,0.000085168394,0.02034758,0.0026360077,0.00036497635,0.0005800128,0.000011805421,5.576512e-7,0.000032381577,0.9741486,0.00042776362],"about_ca_topic_score_codex":0.00007015554,"about_ca_topic_score_gemma":0.000016504036,"teacher_disagreement_score":0.98960173,"about_ca_system_score_codex":0.00021136587,"about_ca_system_score_gemma":0.00063554593,"threshold_uncertainty_score":0.9999157},"labels":[],"label_agreement":null},{"id":"W2703924276","doi":"10.1056/id201006230000004","title":"Admission Hypoglycemia Associated with Poorer Outcome in Pneumonia","year":2010,"lang":"en","type":"article","venue":"Journal watch","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Hypoglycemia; Medicine; Pneumonia; Community-acquired pneumonia; Intensive care medicine; Risk factor; Adverse effect; Pediatrics; Internal medicine; Diabetes mellitus; Endocrinology","score_opus":0.01663132634774049,"score_gpt":0.2966938195062766,"score_spread":0.2800624931585361,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2703924276","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97350067,0.0000075076878,0.000009601027,0.024145527,0.0004957283,0.00011510678,0.0000015897571,0.00003860781,0.0016856656],"genre_scores_gemma":[0.9959216,0.000019381168,0.000079198435,0.0010697066,0.00025729334,0.000004321226,0.0000024587944,0.000023857074,0.0026221753],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99887705,0.000042732205,0.00034731752,0.00013553322,0.00030692687,0.00029046228],"domain_scores_gemma":[0.9991642,0.000055101398,0.00014035952,0.00016305211,0.00013467397,0.00034257604],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035635842,0.00013704499,0.0002749135,0.0001408178,0.0001669214,0.00003774502,0.000075795404,0.00018698278,0.00028833267],"category_scores_gemma":[0.0003786264,0.000083010775,0.000093143164,0.00029247443,0.00004137902,0.00011102404,0.000017384447,0.0016471668,0.00005295947],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005448757,0.00018960355,0.75333154,0.0000052938167,0.000028575108,0.00045212393,0.00011016332,0.000005647759,0.24458875,0.000007342271,0.0006475919,0.0005788875],"study_design_scores_gemma":[0.0022962422,0.0003886722,0.96928424,0.00013072531,0.000063787775,0.0022179089,0.00005242874,0.00004570748,0.0013834267,0.000110728375,0.023886394,0.0001397251],"about_ca_topic_score_codex":0.00001587533,"about_ca_topic_score_gemma":0.00012828044,"teacher_disagreement_score":0.24320532,"about_ca_system_score_codex":0.0001420194,"about_ca_system_score_gemma":0.00019767886,"threshold_uncertainty_score":0.7156212},"labels":[],"label_agreement":null},{"id":"W2736672332","doi":"10.1097/inf.0000000000001709","title":"Changes in the Nature and Severity of Invasive Pneumococcal Disease in Children Before and After the Seven-valent and Thirteen-valent Pneumococcal Conjugate Vaccine Programs in Calgary, Canada","year":2017,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary; Alberta Children's Hospital","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Interquartile range; Conjugate vaccine; Pediatrics; Streptococcus pneumoniae; Meningitis; Incidence (geometry); Epidemiology; Pneumonia; Bacteremia; Vaccination; Pneumococcal polysaccharide vaccine; Pneumococcal infections; Internal medicine; Immunology; Pneumococcal disease; Immunization; Antibiotics; Immune system","score_opus":0.0063296443525107,"score_gpt":0.23332692537960925,"score_spread":0.22699728102709854,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2736672332","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9870666,0.0016934727,3.3351068e-7,0.0095951585,0.00017632921,0.0013834746,0.00004982403,0.000008977586,0.000025822543],"genre_scores_gemma":[0.99536085,0.0032121162,7.342768e-7,0.00075347215,0.0004986685,0.00013957833,0.000004771005,0.00001906839,0.000010740777],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99815094,0.00036722881,0.00040687688,0.00028570107,0.00037912512,0.00041010542],"domain_scores_gemma":[0.9986137,0.0001733386,0.0002977015,0.000433243,0.00008550726,0.00039649341],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00074833713,0.00028449562,0.00036912036,0.00019564743,0.000555485,0.00012635348,0.00022520935,0.000119437726,0.0000070053025],"category_scores_gemma":[0.000392607,0.00014486894,0.000079966245,0.00022059727,0.0002454882,0.0001406576,0.00018875592,0.0014441512,3.4311353e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033199854,0.00029376923,0.99695945,0.000150654,0.000047849633,0.00037840454,0.0008455429,0.000010887825,0.000015930866,0.000011958129,0.000026528403,0.00092703436],"study_design_scores_gemma":[0.002155145,0.00023073767,0.99505234,0.00012221126,0.000399652,0.0010934817,0.00016507559,0.00008750557,0.0000016796091,0.00048432263,0.00005077743,0.00015709446],"about_ca_topic_score_codex":0.011055601,"about_ca_topic_score_gemma":0.30556837,"teacher_disagreement_score":0.29451278,"about_ca_system_score_codex":0.00013671312,"about_ca_system_score_gemma":0.0007532359,"threshold_uncertainty_score":0.9955299},"labels":[],"label_agreement":null},{"id":"W2737743628","doi":"10.1159/000479089","title":"Risk Factors for Community-Acquired Pneumonia in Adults: A Systematic Review of Observational Studies","year":2017,"lang":"en","type":"review","venue":"Respiration","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":277,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Cohort; Cohort study; Chronic bronchitis; Observational study; Bronchitis; Internal medicine; Risk factor; Intensive care medicine; Pediatrics","score_opus":0.3497438925415436,"score_gpt":0.4659181953658481,"score_spread":0.11617430282430452,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2737743628","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00037310898,0.9918333,0.00002395419,0.00006874359,0.00021280056,0.0071287076,0.00025537214,0.00003585792,0.00006810751],"genre_scores_gemma":[0.00009645198,0.9971038,0.000030790725,0.00016341079,0.000094376795,0.0018486729,0.0005039521,0.0000449199,0.00011364203],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.996034,0.0011853554,0.0020031699,0.0002581598,0.0003212633,0.00019804928],"domain_scores_gemma":[0.9941196,0.0015848454,0.0026029958,0.0010463465,0.000578936,0.00006728284],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0019334556,0.00040008256,0.004194663,0.00037307988,0.00036579705,0.000019399915,0.00025508858,0.00029602117,0.000005044664],"category_scores_gemma":[0.012777772,0.00027380016,0.000819452,0.00030122878,0.00011019986,0.00015389486,0.00005949181,0.00041160756,0.000009110052],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008037107,0.00013191292,0.0002874387,0.9909429,0.00042206192,0.0000016867959,0.00018538993,4.993383e-7,0.0000033031408,0.000051489187,0.00006764886,0.007897649],"study_design_scores_gemma":[0.00036986277,0.00037255668,0.00032411495,0.87362546,0.0037477869,0.000011846982,0.00008125797,0.000010455402,0.0000011297113,0.000022001752,0.12123743,0.0001961013],"about_ca_topic_score_codex":0.000041680083,"about_ca_topic_score_gemma":0.000091590475,"teacher_disagreement_score":0.121169776,"about_ca_system_score_codex":0.00032151083,"about_ca_system_score_gemma":0.0004725036,"threshold_uncertainty_score":0.9999714},"labels":[],"label_agreement":null},{"id":"W2737747669","doi":"10.1016/j.vaccine.2015.06.115","title":"Effectiveness of three pneumococcal conjugate vaccines (PCV) to prevent invasive pneumococcal disease in Quebec, Canada","year":2015,"lang":"en","type":"letter","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Pfizer (Canada)","funders":"","keywords":"Pneumococcal disease; Pneumococcal conjugate vaccine; Pneumococcal infections; Medicine; Streptococcus pneumoniae; Virology; Immunology; Biology; Microbiology; Antibiotics","score_opus":0.014284290411085913,"score_gpt":0.25548779702430136,"score_spread":0.24120350661321543,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2737747669","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.77779335,0.00039027442,0.00001266061,0.21669094,0.0011924244,0.0033563706,0.000273756,0.00007596013,0.00021428149],"genre_scores_gemma":[0.8952895,0.00006751484,0.000009740693,0.09660503,0.0029371227,0.0010700086,0.0009349033,0.00026397096,0.0028222501],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9960776,0.00045467634,0.0010003191,0.0009234186,0.00075453136,0.0007894696],"domain_scores_gemma":[0.99660754,0.00065917807,0.00032389603,0.0010702128,0.0005975184,0.00074167165],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00043878536,0.0007783016,0.0017642269,0.00067579513,0.0000729895,0.000026421592,0.00038440214,0.0005815511,0.00013836053],"category_scores_gemma":[0.0007805029,0.0006457673,0.00029258107,0.00077831926,0.000024531251,0.00011085692,0.00023367895,0.0016346683,0.000048708684],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020040951,0.0011542856,0.3384994,0.010625025,0.00090359757,0.010430203,0.00013819402,0.00070566015,0.08486274,0.000021254022,0.55023456,0.00042095868],"study_design_scores_gemma":[0.003283674,0.00058022095,0.6913724,0.0032858704,0.0005801017,0.0000639664,0.000016345413,0.000020142888,0.0024773413,0.00012347384,0.2974149,0.0007815483],"about_ca_topic_score_codex":0.460351,"about_ca_topic_score_gemma":0.9016108,"teacher_disagreement_score":0.4412598,"about_ca_system_score_codex":0.0013095412,"about_ca_system_score_gemma":0.006355395,"threshold_uncertainty_score":0.99959934},"labels":[],"label_agreement":null},{"id":"W2740212117","doi":"10.1016/j.hlc.2017.06.730","title":"Right Heart Function During and After Community-Acquired Pneumonia in Adults","year":2017,"lang":"en","type":"article","venue":"Heart Lung and Circulation","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; University of Ottawa","funders":"Fukuda Denshi; National Institutes of Health; Lung Health Foundation; Bristol-Myers Squibb","keywords":"Medicine; Complication; Community-acquired pneumonia; Pneumonia; Cardiology; Internal medicine; Heart failure; Convalescence","score_opus":0.010837375774776834,"score_gpt":0.2665046227296668,"score_spread":0.25566724695488996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2740212117","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99804187,0.00013369352,0.000010889242,0.0010329486,0.00012736226,0.00020899426,0.0000016572558,0.000036417696,0.0004061945],"genre_scores_gemma":[0.9995085,0.000021221895,0.000007113025,0.00026197557,0.00008800938,0.00002735541,0.0000060007333,0.0000097800075,0.0000700326],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994426,0.000072502124,0.0001388276,0.00013660248,0.00008250061,0.00012698123],"domain_scores_gemma":[0.9995612,0.000018807299,0.00003795628,0.00027074586,0.000031598945,0.00007969387],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014905342,0.000085461026,0.0001467702,0.000094009745,0.0006799095,0.000054671847,0.000015957767,0.000087698914,0.000020546684],"category_scores_gemma":[0.00003041045,0.00007902573,0.00002913169,0.00004044505,0.000071171504,0.00020715393,0.000025100693,0.00016018399,0.0000070498936],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009070467,0.000045591878,0.9448993,0.00014551554,0.000008469716,0.000005917904,0.00025983216,0.0000050704366,0.054340012,0.000011488711,0.000009377557,0.00017869344],"study_design_scores_gemma":[0.0010552519,0.00006995784,0.996658,0.000279656,0.00002855007,0.0001318385,0.000052593918,0.00065817573,0.00013171784,0.000068292335,0.00078349764,0.00008241788],"about_ca_topic_score_codex":0.00016692156,"about_ca_topic_score_gemma":0.0002018081,"teacher_disagreement_score":0.054208294,"about_ca_system_score_codex":0.000032577587,"about_ca_system_score_gemma":0.000014160978,"threshold_uncertainty_score":0.5229383},"labels":[],"label_agreement":null},{"id":"W2741341678","doi":"10.1128/iai.00434-17","title":"Streptococcus pneumoniae Colonization Is Required To Alter the Nasal Microbiota in Cigarette Smoke-Exposed Mice","year":2017,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Joseph’s Healthcare Hamilton; McMaster University Medical Centre; Population Health Research Institute; McMaster University","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Dysbiosis; Biology; Colonisation resistance; Microbiology; Streptococcus pneumoniae; Colonization; Fusobacterium; Immunology; Pathogen; Microbiome; Gut flora; Bacteria; Antibiotics; Bacteroides","score_opus":0.03463722114741968,"score_gpt":0.31409010788692787,"score_spread":0.2794528867395082,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2741341678","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.990319,0.000022254193,0.000044601067,0.0066904407,0.0004659602,0.0006084483,0.000008581192,0.000051569037,0.0017891255],"genre_scores_gemma":[0.9961495,0.00008191936,0.0000026585792,0.0031677147,0.00009451705,0.000047560945,0.000009328224,0.000014761372,0.00043208292],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991522,0.00011980734,0.00023789764,0.00019724834,0.00009555869,0.00019728804],"domain_scores_gemma":[0.9990329,0.000044248565,0.00012415854,0.0005833782,0.00012026507,0.000095037016],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029033,0.00014286139,0.00018643176,0.00014327286,0.00097456464,0.0001347183,0.000104531726,0.0001338159,0.0000743809],"category_scores_gemma":[0.00022884054,0.00010822691,0.00006330449,0.00017139528,0.00014734526,0.00018329606,0.00010607149,0.0003785196,0.000031947176],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038098537,0.00014966003,0.56071055,0.000022546965,0.000041333493,0.000005342615,0.0009416245,0.0000044903495,0.43440458,0.000022369883,0.0007700562,0.002889341],"study_design_scores_gemma":[0.00097039,0.00027066798,0.94674593,0.000081339815,0.00003765672,0.00003293145,0.000059481143,0.000073417825,0.023672335,0.000020505739,0.027913244,0.00012206909],"about_ca_topic_score_codex":0.0010581478,"about_ca_topic_score_gemma":0.0006630651,"teacher_disagreement_score":0.41073224,"about_ca_system_score_codex":0.00008983156,"about_ca_system_score_gemma":0.00006553565,"threshold_uncertainty_score":0.74956614},"labels":[],"label_agreement":null},{"id":"W2742360287","doi":"10.21769/bioprotoc.2434","title":"Observation of Pneumococcal Phase Variation in Colony Morphology","year":2017,"lang":"en","type":"article","venue":"BIO-PROTOCOL","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Natural Science Foundation of China; School of Medicine, New York University; York University; Bill and Melinda Gates Foundation","keywords":"Phase variation; Streptococcus pneumoniae; Biology; Virulence; Microbiology; Pathogen; DNA methylation; Pneumonia; Chocolate agar; Agar plate; Gene; Genetics; Bacteria; Medicine; Gene expression","score_opus":0.06829126398383689,"score_gpt":0.4054250689891176,"score_spread":0.33713380500528073,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2742360287","genre_codex":"empirical","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6359961,1.8303915e-7,0.00011619244,0.0010017881,0.0000996639,0.36070558,0.0000071659565,0.000029732751,0.002043572],"genre_scores_gemma":[0.4307073,1.214363e-7,0.000092376555,0.00013304873,0.0000941536,0.5687733,0.0000032755715,0.0000082571805,0.0001881375],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99921346,0.000048415164,0.00031602668,0.000169125,0.00011308231,0.00013987663],"domain_scores_gemma":[0.99913186,0.000024307714,0.00026587895,0.00042130752,0.00009855113,0.00005811961],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021294288,0.000090714566,0.00020888896,0.00011586322,0.00012544963,0.00001462326,0.00009932521,0.00015128238,0.00013906285],"category_scores_gemma":[0.0002535397,0.00007707695,0.000055329732,0.00008807926,0.00009925081,0.00011796176,0.0000331038,0.00012825741,0.000031439606],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027706038,0.0006789341,0.1508421,0.00010442178,0.000011833357,0.000025818617,0.00006162436,0.0000030750339,0.8455786,0.00029538682,0.0001412376,0.0019799161],"study_design_scores_gemma":[0.00781197,0.0008827858,0.92577976,0.00006523815,0.000016224407,0.000019478797,0.0000065145505,0.00026991265,0.01829773,0.00012271639,0.04665032,0.0000773567],"about_ca_topic_score_codex":0.000117889795,"about_ca_topic_score_gemma":0.000028619315,"teacher_disagreement_score":0.8272809,"about_ca_system_score_codex":0.000058550388,"about_ca_system_score_gemma":0.0001303142,"threshold_uncertainty_score":0.31431067},"labels":[],"label_agreement":null},{"id":"W2742475012","doi":"10.1017/s0950268817001510","title":"Hospitalisation for lower respiratory tract infection in children in the province of Quebec, Canada, before and during the pneumococcal conjugate vaccine era","year":2017,"lang":"en","type":"article","venue":"Epidemiology and Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Centre hospitalier universitaire de Québec; Institut National de Santé Publique du Québec; Université Laval","funders":"Ministère de la Santé; Ministère de la Santé et des Services sociaux","keywords":"Medicine; Pneumococcal conjugate vaccine; Pneumonia; Bronchiolitis; Poisson regression; Vaccination; Pediatrics; Streptococcus pneumoniae; Respiratory tract infections; Pneumococcal pneumonia; Lower respiratory tract infection; Pneumococcal infections; Population; Epidemiology; Demography; Respiratory system; Immunology; Internal medicine; Environmental health","score_opus":0.014642861487184576,"score_gpt":0.2883464951188683,"score_spread":0.2737036336316837,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2742475012","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940425,0.00008831548,0.000040191844,0.0045775943,0.00021679858,0.00094293227,0.0000058327164,0.0000105484305,0.00007529989],"genre_scores_gemma":[0.99877506,0.00013312278,0.0000022728095,0.0007490188,0.00017250693,0.00011382784,0.0000074206996,0.000007654396,0.00003909545],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99883944,0.0002994271,0.0004019969,0.00021614956,0.000050624396,0.00019234388],"domain_scores_gemma":[0.99906206,0.00031119812,0.00029191162,0.00025204438,0.00004467808,0.00003810319],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014048397,0.00012493519,0.00030030316,0.000098051685,0.0004372411,0.000011505741,0.000045832392,0.0001626611,0.0000039202337],"category_scores_gemma":[0.0013270811,0.00007566156,0.000048720573,0.00006132395,0.00016063498,0.00020129335,0.000022029863,0.00035921705,2.7832482e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006258277,0.00006954882,0.9969795,0.000055165547,0.000020952395,0.0000021269916,0.00007785973,0.000052965544,0.0011633611,0.0003239453,0.00007325034,0.0011187681],"study_design_scores_gemma":[0.0011290074,0.00037292863,0.99689245,0.00005627199,0.000038916634,0.000067352725,0.000011327811,0.00010659085,0.00012247197,0.00040100125,0.00073147187,0.000070212],"about_ca_topic_score_codex":0.22518784,"about_ca_topic_score_gemma":0.83618385,"teacher_disagreement_score":0.610996,"about_ca_system_score_codex":0.00010001905,"about_ca_system_score_gemma":0.00015772438,"threshold_uncertainty_score":0.7799717},"labels":[],"label_agreement":null},{"id":"W2742581200","doi":"10.1056/id200306200000007","title":"Blood Cultures: Helpful in Managing Community-Acquired Pneumonia?","year":2003,"lang":"en","type":"article","venue":"Journal watch","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Community-acquired pneumonia; Observational study; Pneumonia; Intensive care medicine; Blood culture; Emergency medicine; Internal medicine; Antibiotics","score_opus":0.02137851561798721,"score_gpt":0.30126870129813255,"score_spread":0.27989018568014534,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2742581200","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9740885,0.00021153115,0.00006331355,0.013321562,0.00038269686,0.00013940106,0.0000010848433,0.00004177713,0.011750147],"genre_scores_gemma":[0.9948725,0.000677878,0.00017806006,0.0017494679,0.00016465396,0.0000072953867,0.0000017270725,0.000022673572,0.0023257423],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986267,0.0003671061,0.0003558293,0.00010086916,0.00022544179,0.00032403483],"domain_scores_gemma":[0.9992754,0.000059097205,0.0000971062,0.0002544902,0.000096800664,0.00021712309],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000664315,0.00014670637,0.0002750389,0.00015849882,0.0005053191,0.000058965667,0.00010874286,0.00010592138,0.00012625463],"category_scores_gemma":[0.00018769277,0.000110174,0.00013538089,0.00035001393,0.000048526752,0.00013169035,0.000023060767,0.001023872,0.00004993718],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000067361216,0.0025174217,0.28319544,0.0001960307,0.0003674335,0.0026694203,0.00782664,0.00018603643,0.6951532,0.00057020993,0.0050353603,0.0022154858],"study_design_scores_gemma":[0.0137247015,0.002052805,0.17804086,0.0016017187,0.0007575388,0.04741427,0.014001639,0.000083109124,0.031053733,0.008980408,0.70122087,0.0010683234],"about_ca_topic_score_codex":0.000031498825,"about_ca_topic_score_gemma":0.00006073657,"teacher_disagreement_score":0.6961855,"about_ca_system_score_codex":0.00012378693,"about_ca_system_score_gemma":0.00009295365,"threshold_uncertainty_score":0.44927654},"labels":[],"label_agreement":null},{"id":"W2743399200","doi":"10.1016/j.amjmed.2017.06.039","title":"Effect of Age on the Manifestations and Outcomes of Invasive Pneumococcal Disease in Adults","year":2017,"lang":"en","type":"article","venue":"The American Journal of Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Provincial Laboratory of Public Health; Dalhousie University","funders":"","keywords":"Medicine; Case fatality rate; Streptococcus pneumoniae; Pneumococcal conjugate vaccine; Pneumonia; Pneumococcal infections; Pediatrics; Meningitis; Disease; Pneumococcal pneumonia; Serotype; Mortality rate; Pneumococcal vaccine; Internal medicine; Epidemiology; Immunology; Antibiotics","score_opus":0.013514664812830174,"score_gpt":0.32178704438929207,"score_spread":0.3082723795764619,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2743399200","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97025365,0.00006162296,0.0000038705684,0.029085593,0.00008341813,0.00020103635,0.0000036096421,0.000001733241,0.00030547532],"genre_scores_gemma":[0.9990654,0.00022953017,0.0000029098494,0.0005727288,0.00009447112,0.000004062729,3.449448e-7,0.000006626029,0.000023922756],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990132,0.00023107044,0.0003493337,0.00006008278,0.0002568563,0.00008949154],"domain_scores_gemma":[0.9972336,0.0014214446,0.0008204112,0.0003275795,0.00008382069,0.000113103466],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007958724,0.00009212943,0.0004906997,0.00012807165,0.000098244534,0.0000031393238,0.00017253982,0.000011204481,0.000012597307],"category_scores_gemma":[0.0025870823,0.000035386925,0.000080456026,0.00008637816,0.0015577477,0.000033543056,0.000025512776,0.0002476805,7.488122e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017967029,0.00014554911,0.95857275,0.00014006105,0.00018115589,0.00046077915,0.0017463709,0.000018092938,0.025172973,0.00020554931,0.000090942114,0.011469071],"study_design_scores_gemma":[0.002033914,0.005479979,0.98982483,0.0010699285,0.00023240282,0.00011291197,0.0005943916,0.000009899883,0.00046987517,0.00010039434,0.000041661042,0.000029831996],"about_ca_topic_score_codex":0.00010796672,"about_ca_topic_score_gemma":0.00002160389,"teacher_disagreement_score":0.031252056,"about_ca_system_score_codex":0.000015382058,"about_ca_system_score_gemma":0.00006954268,"threshold_uncertainty_score":0.57395864},"labels":[],"label_agreement":null},{"id":"W2746388033","doi":"","title":"Streptococcus pneumoniae 1型双性イオンの莢膜多糖類繰り返し単位のオリゴマーに向けた反復法に用いるビルディングブロックの合成","year":2016,"lang":"ja","type":"article","venue":"Canadian Journal of Chemistry","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Chemistry; Streptococcus pneumoniae; Microbiology; Antibiotics; Biochemistry","score_opus":0.01121161131150677,"score_gpt":0.23339534677263715,"score_spread":0.22218373546113038,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2746388033","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96266556,0.0028067902,0.0000742311,0.014249274,0.002390986,0.00021563446,0.00021272621,0.000023157405,0.01736162],"genre_scores_gemma":[0.98485905,0.00028548218,0.000010135604,0.00054629514,0.0029972738,0.0000053932094,0.000002256,0.000072588795,0.011221524],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99699694,0.00008000244,0.0011360038,0.00034842792,0.00044114544,0.0009975096],"domain_scores_gemma":[0.99389684,0.00022096538,0.00075501844,0.00062720105,0.00073423045,0.0037657174],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004563385,0.0004522483,0.0007745793,0.00030895314,0.00028555546,0.000085350846,0.0005156623,0.0005471325,0.0061784266],"category_scores_gemma":[0.0010386397,0.00031934018,0.00059841515,0.00036937336,0.00057778956,0.00025744084,0.000025988442,0.00085199287,0.000186497],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002665187,0.000102097394,0.09860715,0.00028228393,0.00058815227,0.0040322063,0.0003604049,0.0000024641859,0.8580321,0.000027110204,0.023430262,0.014509097],"study_design_scores_gemma":[0.004909644,0.0006239155,0.03182268,0.00470255,0.00073969795,0.004905652,0.0009396766,0.0000025595518,0.1880737,0.00045097366,0.761877,0.0009519889],"about_ca_topic_score_codex":0.00024334929,"about_ca_topic_score_gemma":0.00097125076,"teacher_disagreement_score":0.7384467,"about_ca_system_score_codex":0.0010336561,"about_ca_system_score_gemma":0.009027163,"threshold_uncertainty_score":0.99992585},"labels":[],"label_agreement":null},{"id":"W2748494839","doi":"10.1093/ofid/ofx163.1495","title":"Streptococcus pneumoniae as a Cause of Community-Acquired Pneumonia: Changes Over the Past 100 Years","year":2017,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"BioFire Diagnostics; Shionogi; Astellas Pharma; National Cancer Institute; Agency for Healthcare Research and Quality; National Institutes of Health; Medicines Company; National Institute of Allergy and Infectious Diseases; Pfizer","keywords":"Community-acquired pneumonia; Medicine; Streptococcus pneumoniae; Pneumonia; Confidence interval; Pneumococcal pneumonia; Internal medicine; Pneumonia severity index; Demography; Antibiotics; Pediatrics; Gerontology","score_opus":0.03349563570377162,"score_gpt":0.34136660653003487,"score_spread":0.30787097082626325,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2748494839","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9742119,0.00008783746,0.0000023307452,0.0046171253,0.0004065344,0.0014361107,0.00016753333,0.00011123571,0.018959397],"genre_scores_gemma":[0.9961665,0.00009766186,6.8605283e-7,0.0021719579,0.00014763266,0.00037396065,0.000030350475,0.00005449159,0.0009567032],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984449,0.00023726419,0.0003160067,0.00024880713,0.00031285957,0.0004401749],"domain_scores_gemma":[0.9969512,0.00017347325,0.00043642256,0.0019866594,0.00016279008,0.00028945657],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00022567953,0.00028889257,0.0005257942,0.0001461404,0.0021072135,0.0003887785,0.00088192377,0.00013092946,0.00034425702],"category_scores_gemma":[0.00035385706,0.00021152612,0.00024297572,0.00017634098,0.00062602706,0.0003630265,0.0009442652,0.00034604716,0.00012046268],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000050658044,0.0010350662,0.9814465,0.00007723762,0.00039511465,0.000072381496,0.000362852,0.000007726704,0.007060024,0.0005180103,0.0036059169,0.005368535],"study_design_scores_gemma":[0.00167544,0.0010652869,0.97050387,0.00014643752,0.0004574837,0.00008058635,0.0005785453,0.000007830225,0.000322136,0.00062783924,0.024299918,0.00023461707],"about_ca_topic_score_codex":0.002105253,"about_ca_topic_score_gemma":0.0024865107,"teacher_disagreement_score":0.02195466,"about_ca_system_score_codex":0.00009355953,"about_ca_system_score_gemma":0.00023367663,"threshold_uncertainty_score":0.9991919},"labels":[],"label_agreement":null},{"id":"W2749300808","doi":"10.1093/ofid/ofx163.1485","title":"Decrease in PCV13 Serotypes in Adults Hospitalized with Pneumococcal Pneumonia Over Time: Evidence of Herd Immunity Effects from Childhood Vaccination","year":2017,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University; Université de Sherbrooke; McMaster University; Saint John Regional Hospital; Mount Sinai Hospital; University of British Columbia; Ottawa Hospital; Izaak Walton Killam Health Centre; Centre hospitalier universitaire de Québec; Nova Scotia Health Authority; Dalhousie University","funders":"Sanofi Pasteur; Public Health Agency of Canada; Canadian Institutes of Health Research; Regeneron Pharmaceuticals; Public Health Agency; Sanofi; AstraZeneca; Cleveland Clinic; Pfizer","keywords":"Herd immunity; Medicine; Serotype; Streptococcus pneumoniae; Pneumococcal disease; Vaccination; Pneumococcal pneumonia; Pneumonia; Pneumococcal conjugate vaccine; Sputum; Immunity; Immunization; Community-acquired pneumonia; Herd; Immunology; Pediatrics; Internal medicine; Antigen; Microbiology; Immune system; Antibiotics; Biology; Veterinary medicine; Tuberculosis","score_opus":0.007130770438512256,"score_gpt":0.28549313540590265,"score_spread":0.2783623649673904,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2749300808","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949041,0.00027027124,0.0000046572654,0.0004236143,0.00012556092,0.0022067397,0.000045902645,0.00006391701,0.0019552123],"genre_scores_gemma":[0.9991082,0.0001303674,0.000010881863,0.00023116062,0.000037254034,0.00034439,0.000044133583,0.0000415002,0.000052090963],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982414,0.00021340181,0.00042832177,0.0004626025,0.00028054905,0.0003736808],"domain_scores_gemma":[0.99794406,0.00026331918,0.0003839671,0.0009580044,0.00014299617,0.00030766954],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00017753422,0.00031420184,0.0006779254,0.00025592468,0.0003505752,0.000170101,0.00043283164,0.00014808266,0.00025147572],"category_scores_gemma":[0.0013699243,0.00025852755,0.00013666647,0.00028206914,0.000116368145,0.0011225902,0.00032574963,0.0003127152,0.00004360436],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000838114,0.0020627675,0.9873648,0.00016287848,0.00010047773,0.00011769723,0.0001672226,0.000028582046,0.0065713692,0.000032192787,0.000027447,0.0025264167],"study_design_scores_gemma":[0.007766638,0.0014337987,0.9851467,0.0034125685,0.00017060395,0.000018293635,0.000028055583,0.00013940588,0.0010756163,0.00048365735,0.000029902663,0.00029475446],"about_ca_topic_score_codex":0.0076463083,"about_ca_topic_score_gemma":0.003398547,"teacher_disagreement_score":0.006928524,"about_ca_system_score_codex":0.00020295595,"about_ca_system_score_gemma":0.00041667884,"threshold_uncertainty_score":0.9999867},"labels":[],"label_agreement":null},{"id":"W2749867961","doi":"10.11622/smedj.2017079","title":"Prognostic factors for mortality due to pneumonia among adults from different age groups in Singapore and mortality predictions based on PSI and CURB-65","year":2017,"lang":"en","type":"article","venue":"Singapore Medical Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital","funders":"Singapore General Hospital","keywords":"Medicine; Pneumonia; Demography; Gerontology; Age groups; Pediatrics; Intensive care medicine; Internal medicine","score_opus":0.033310745444302646,"score_gpt":0.3212903682739555,"score_spread":0.2879796228296529,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2749867961","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99368155,0.000034051383,0.0012569145,0.0030232258,0.00085938623,0.00082320574,0.00013377494,0.000054859294,0.00013305558],"genre_scores_gemma":[0.998541,0.000029016795,0.000057193058,0.000551354,0.00065602706,0.000055510383,0.00006341572,0.000034591267,0.000011889498],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.997344,0.00014259666,0.00066949235,0.0005108648,0.0008520959,0.00048092657],"domain_scores_gemma":[0.9972617,0.00044125537,0.00031347564,0.00046793156,0.00011120977,0.0014044055],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006576645,0.0003421035,0.000686701,0.00023606599,0.00092663075,0.00022087287,0.00019191498,0.00032139503,0.00006127679],"category_scores_gemma":[0.0037234097,0.00024243888,0.00016844727,0.000084783635,0.0005411402,0.00017709496,0.0000873794,0.001125403,0.0000010622053],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010711324,0.00055118324,0.99381715,0.000092821,0.0001021428,0.0009385509,0.0005625587,0.000008662168,0.00057382334,0.000015790201,0.000085860294,0.0031443723],"study_design_scores_gemma":[0.0027585977,0.0008059635,0.9885646,0.0017170388,0.0002856297,0.00014522322,0.00024365565,0.0045520817,0.00008543262,0.0004647673,0.00014659046,0.00023040648],"about_ca_topic_score_codex":0.0003192932,"about_ca_topic_score_gemma":0.0018281518,"teacher_disagreement_score":0.005252509,"about_ca_system_score_codex":0.00013525669,"about_ca_system_score_gemma":0.00022870785,"threshold_uncertainty_score":0.98863703},"labels":[],"label_agreement":null},{"id":"W2751122198","doi":"10.1093/ofid/ofx163.1191","title":"The Changing Epidemiology of Invasive Pneumococcal Disease Among the Indigenous and Non-indigenous Population of Northwestern Ontario, Canada, from 2006 Through 2015 and Emergence of Non-vaccine Serotypes","year":2017,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Thunder Bay Regional Health Sciences Centre; NOSM University; University of Calgary","funders":"","keywords":"Indigenous; Medicine; Epidemiology; Case fatality rate; Demography; Population; Serotype; Context (archaeology); Pneumococcal disease; Streptococcus pneumoniae; Internal medicine; Environmental health; Immunology; Geography; Biology; Microbiology","score_opus":0.013813199990751176,"score_gpt":0.28991405327216163,"score_spread":0.27610085328141043,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2751122198","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967717,0.00079455494,0.000025959262,0.00037433382,0.00023607674,0.0013329271,0.00030370223,0.000006863912,0.00015387002],"genre_scores_gemma":[0.9992149,0.00031197473,0.0000036738254,0.00016604296,0.000047902602,0.00008611292,0.0000650254,0.000017962086,0.00008644401],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99864346,0.00009493735,0.0005032472,0.00026925092,0.00015458459,0.00033453963],"domain_scores_gemma":[0.99785197,0.000367124,0.00077984354,0.0006441329,0.00016675732,0.00019017216],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020121547,0.00019984499,0.0005481211,0.00005747122,0.0012122269,0.000027662061,0.00028349247,0.00006996595,0.000024435445],"category_scores_gemma":[0.00026716996,0.00012518934,0.00008863752,0.00008855766,0.00029579533,0.0002629505,0.00033362999,0.00014387224,5.1848485e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001120784,0.00012110775,0.9964744,0.00008122525,0.00020741939,0.000010808602,0.0020000793,0.0000838616,0.00024111438,0.000015500596,0.00008420129,0.00056824327],"study_design_scores_gemma":[0.00069643947,0.00028138698,0.9968797,0.0001774032,0.00036316286,0.000008277855,0.00063184084,0.000032648182,0.00015076714,0.0005667131,0.000088733876,0.00012293764],"about_ca_topic_score_codex":0.9548345,"about_ca_topic_score_gemma":0.9821747,"teacher_disagreement_score":0.027340172,"about_ca_system_score_codex":0.000069343914,"about_ca_system_score_gemma":0.0008573122,"threshold_uncertainty_score":0.93235916},"labels":[],"label_agreement":null},{"id":"W2751544249","doi":"10.1016/j.meegid.2017.08.034","title":"Serotype and MLST-based inference of population structure of clinical Streptococcus pneumonia e from invasive and noninvasive pneumococcal disease","year":2017,"lang":"en","type":"article","venue":"Infection Genetics and Evolution","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ministry of Health, British Columbia; Ministry of Science and Technology","keywords":"Serotype; Multilocus sequence typing; Streptococcus pneumoniae; Microbiology; Biology; Typing; Population; Pneumococcal disease; Genotype; Virology; Medicine; Genetics; Gene; Antibiotics","score_opus":0.03195620463427816,"score_gpt":0.34703807160238853,"score_spread":0.31508186696811036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2751544249","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985567,0.00017045237,0.0003737377,0.00014381814,0.00023482724,0.0003771343,0.00010353029,0.000015605496,0.000024246632],"genre_scores_gemma":[0.999287,0.00040457273,0.00009439699,0.000029357812,0.00011964285,0.000007347226,0.00004247823,0.00001033546,0.0000048772376],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998985,0.000070885624,0.00041966455,0.0002769412,0.00013948962,0.00010802387],"domain_scores_gemma":[0.9987103,0.00013122553,0.00043630353,0.0003035956,0.00022233995,0.00019623093],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000093953095,0.00013963935,0.00031832987,0.00010680821,0.00023576537,0.000029743622,0.000032638534,0.00017997042,0.000010807551],"category_scores_gemma":[0.0005363631,0.00012468864,0.00006111413,0.000054280084,0.00030815185,0.000100752375,0.000059022674,0.0001639702,5.32199e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007202729,0.00006605895,0.88100725,0.00011804438,0.000039474166,0.0000020479958,0.000030427298,0.0001368475,0.11578024,0.000077944766,0.0000017833606,0.0026678378],"study_design_scores_gemma":[0.0011002802,0.00048711637,0.9902431,0.0001771233,0.00021684037,0.0000053182143,0.000011804452,0.0032256835,0.0033114008,0.0010651328,0.000046559573,0.00010965765],"about_ca_topic_score_codex":0.00082182494,"about_ca_topic_score_gemma":0.0007714206,"teacher_disagreement_score":0.112468846,"about_ca_system_score_codex":0.000022471593,"about_ca_system_score_gemma":0.00014945427,"threshold_uncertainty_score":0.5084655},"labels":[],"label_agreement":null},{"id":"W2752606420","doi":"10.1093/ofid/ofx163.1193","title":"Changing Epidemiology of Invasive Pneumococcal Disease due to Conjugate Vaccine Serotypes in Toronto, Canada After Introduction of a Routine Pediatric PCV13 Program","year":2017,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Mount Sinai Hospital; McMaster University; University of Toronto","funders":"","keywords":"Medicine; Pneumococcal disease; Incidence (geometry); Pediatrics; Pneumococcal conjugate vaccine; Epidemiology; Serotype; Population; Internal medicine; Streptococcus pneumoniae; Environmental health; Virology","score_opus":0.012404666921059303,"score_gpt":0.3138386265740388,"score_spread":0.30143395965297953,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2752606420","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9920423,0.0004020273,0.000014303443,0.0040673465,0.00047977254,0.0021809202,0.00014831737,0.000038448758,0.0006265584],"genre_scores_gemma":[0.9978774,0.0000827197,0.00001612606,0.00065743533,0.00038914423,0.00078652287,0.000051473806,0.00002886682,0.00011028201],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99815524,0.00014413461,0.00061573944,0.0004289399,0.00015583927,0.0005000876],"domain_scores_gemma":[0.9980098,0.00013112984,0.00043708496,0.00071153295,0.00023897289,0.00047149466],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026433647,0.00024229538,0.0007928769,0.00020152857,0.00023456362,0.000024633764,0.00025649948,0.0000769196,0.0002562821],"category_scores_gemma":[0.0021833677,0.00021051939,0.00014102884,0.00022556454,0.000072690724,0.0003472048,0.00038352932,0.00013492687,0.000005762563],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005312938,0.00069986505,0.9955154,0.00029824243,0.0000812382,0.00008744373,0.000050765335,0.00009466189,0.00022847057,0.00020122851,0.0004922468,0.0017191465],"study_design_scores_gemma":[0.0015116006,0.0007717331,0.9956682,0.000120254525,0.00028226603,0.000027911856,0.00015059863,0.000037683927,0.00021574507,0.0001516821,0.0008625629,0.00019980628],"about_ca_topic_score_codex":0.17761716,"about_ca_topic_score_gemma":0.6208175,"teacher_disagreement_score":0.44320032,"about_ca_system_score_codex":0.0003964607,"about_ca_system_score_gemma":0.00093665335,"threshold_uncertainty_score":0.8584731},"labels":[],"label_agreement":null},{"id":"W2753589803","doi":"10.1038/s41598-017-10830-z","title":"A new mass spectrometry-based method for the quantification of histones in plasma from septic shock patients","year":2017,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Instituto de Salud Carlos III; INCLIVA Instituto de Investigación Sanitaria; Grand Challenges Canada; Universidad de Navarra; European Regional Development Fund; Generalitat Valenciana; Universitat de València; Ministerio de Economía y Competitividad","keywords":"Septic shock; Histone; Biomarker; Mass spectrometry; Shock (circulatory); Medicine; Histone H2B; Selected reaction monitoring; Chemistry; Internal medicine; Chromatography; Biochemistry; Sepsis; Tandem mass spectrometry; DNA","score_opus":0.03453542843158743,"score_gpt":0.3326631684740105,"score_spread":0.2981277400424231,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2753589803","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8968279,0.000054079854,0.09316439,0.0014653524,0.0068075606,0.0010620523,0.000016075217,0.000030046009,0.00057256635],"genre_scores_gemma":[0.983581,0.0000010110537,0.01419225,0.000032211112,0.00006974707,0.000041690182,0.000047223657,0.000013120988,0.002021757],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998565,0.000032674634,0.00046266467,0.00042990624,0.00033621967,0.00017350151],"domain_scores_gemma":[0.9976693,0.00016841503,0.0005678636,0.0013240358,0.00018611555,0.00008427141],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00088881474,0.00010079858,0.00023096263,0.00022358587,0.0004230102,0.00010055373,0.00014205204,0.00006802305,0.00007983921],"category_scores_gemma":[0.00089785433,0.00006887583,0.00014277332,0.00021289967,0.00015510041,0.00008854718,0.000020591024,0.00009519316,0.000007645531],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000057397683,0.00024051084,0.32140642,0.000055351098,0.000049335413,0.00002908278,0.00019418813,0.00020556338,0.6671848,0.00006375216,0.0045796223,0.0059339367],"study_design_scores_gemma":[0.0017198017,0.00019964828,0.7434446,0.0001773082,0.00026582245,0.00002053341,0.000079329904,0.00886466,0.19632843,0.003751486,0.044943385,0.00020498189],"about_ca_topic_score_codex":0.00033700754,"about_ca_topic_score_gemma":0.000188063,"teacher_disagreement_score":0.47085643,"about_ca_system_score_codex":0.00008272719,"about_ca_system_score_gemma":0.00033429754,"threshold_uncertainty_score":0.3253495},"labels":[],"label_agreement":null},{"id":"W2753938536","doi":"10.1016/j.vaccine.2017.09.002","title":"Prevalence and decay of maternal pneumococcal and meningococcal antibodies: A meta-analysis of type-specific decay rates","year":2017,"lang":"en","type":"review","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Children's Hospital","funders":"National Institute for Health and Care Research","keywords":"Seroprevalence; Medicine; Vaccination; Serotype; Antibody; Serology; Meningococcal vaccine; Pneumococcal vaccine; Pneumococcal infections; Herd immunity; Pediatrics; Immunology; Streptococcus pneumoniae; Immunization; Biology; Microbiology; Antibiotics","score_opus":0.14470638196920285,"score_gpt":0.39992989723983535,"score_spread":0.2552235152706325,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2753938536","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.022071067,0.9767854,0.000008446967,0.000043949796,0.000088018445,0.0006037129,0.00014464618,0.000019058012,0.00023568784],"genre_scores_gemma":[0.010609112,0.9885444,0.000048289425,0.000008336681,0.00007020495,0.000036760113,0.000026717289,0.000034214143,0.0006219854],"study_design_codex":"meta_analysis","study_design_gemma":"not_applicable","domain_scores_codex":[0.99792737,0.00014864224,0.0009804603,0.0004963328,0.0002215582,0.00022563765],"domain_scores_gemma":[0.99768555,0.00026693198,0.00089874695,0.0007511865,0.00022466469,0.00017290194],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00043100765,0.00043051783,0.0049260654,0.0007665184,0.00010822252,0.000032153348,0.00018899697,0.00026702692,0.00032422994],"category_scores_gemma":[0.00006792396,0.00026521613,0.0011276441,0.00045257213,0.00009729336,0.00007488772,0.00014475439,0.0002838067,0.0000062449803],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024881284,0.000742391,0.13250671,0.1200143,0.53010875,0.0002397851,0.0003925314,0.0000041460753,0.0072248196,0.0005971247,0.00031871663,0.20760192],"study_design_scores_gemma":[0.0004642844,0.00036918902,0.031014606,0.00203967,0.4686451,0.00025506114,0.0000066670923,0.000011313461,0.0002586007,0.0000040675122,0.49663666,0.00029478446],"about_ca_topic_score_codex":0.000019908144,"about_ca_topic_score_gemma":0.000011050288,"teacher_disagreement_score":0.49631795,"about_ca_system_score_codex":0.000021054462,"about_ca_system_score_gemma":0.000124889,"threshold_uncertainty_score":0.99998003},"labels":[],"label_agreement":null},{"id":"W2754551102","doi":"10.47339/ephj.2017.71","title":"Association between knowledge of the pneumococcal vaccine, vaccination status and recommendations for vaccination","year":2017,"lang":"en","type":"article","venue":"BCIT Environmental Public Health Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Vaccination; Medicine; Pneumococcal vaccine; Pneumococcal infections; Pneumococcal polysaccharide vaccine; Streptococcus pneumoniae; Population; Health care; Pneumococcal vaccination; Family medicine; Immunology; Environmental health; Pneumococcal disease; Biology","score_opus":0.045503800044439546,"score_gpt":0.34755601612769554,"score_spread":0.302052216083256,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2754551102","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.88769734,0.00016750314,0.0008312769,0.109156504,0.0006269055,0.00086390454,0.000115217656,0.00001535766,0.00052601006],"genre_scores_gemma":[0.9978772,0.00067769596,0.00010214116,0.00034538846,0.00035426195,0.000024968185,0.00003874216,0.00001667743,0.0005629411],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986356,0.00015975798,0.00050408876,0.0001556313,0.00020437365,0.00034056907],"domain_scores_gemma":[0.99825037,0.00013574552,0.0009905306,0.0002404071,0.00006610914,0.0003168498],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.001172735,0.000116640746,0.00024313484,0.00013609433,0.0016849763,0.00010528994,0.0001252742,0.00011247292,0.00015025106],"category_scores_gemma":[0.00047380888,0.000089190806,0.000116788855,0.000060763123,0.000017704833,0.0004638322,0.00007240112,0.00034175758,0.0000051377506],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008604688,0.00023103233,0.8840141,0.00006840693,0.00011095806,1.1832895e-7,0.00034045862,8.939716e-7,0.0011869137,0.00007919311,0.0023397952,0.111619495],"study_design_scores_gemma":[0.0018134926,0.00023624826,0.881934,0.000031506384,0.000059663475,0.000026356662,0.00018577161,0.00007074865,0.000107251675,0.00016981689,0.11529965,0.00006552249],"about_ca_topic_score_codex":0.000014100858,"about_ca_topic_score_gemma":0.000029474475,"teacher_disagreement_score":0.112959854,"about_ca_system_score_codex":0.0010572335,"about_ca_system_score_gemma":0.0002936678,"threshold_uncertainty_score":0.9996147},"labels":[],"label_agreement":null},{"id":"W2754746888","doi":"10.1177/0885066617728895","title":"Outcomes of Critically Ill Patients Who Have Serotype 5 Invasive Pneumococcal Disease","year":2017,"lang":"en","type":"article","venue":"Journal of Intensive Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Centre for Disease Control; St. Paul's Hospital; University of British Columbia; York Central Hospital","funders":"","keywords":"Medicine; Intensive care unit; Pneumonia; Serotype; Internal medicine; Retrospective cohort study; Intensive care medicine; Emergency medicine; Virology","score_opus":0.024766039242678,"score_gpt":0.3291800808837781,"score_spread":0.3044140416411001,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2754746888","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95048165,0.00030041178,0.000041968255,0.045791436,0.0013522703,0.00028383767,0.00002602803,0.0000072490125,0.0017151185],"genre_scores_gemma":[0.97231036,0.00012935695,0.000020513658,0.026728071,0.0005226986,0.0000032525427,0.000006991479,0.000022698458,0.0002560457],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998159,0.000054842953,0.00078834925,0.00016031243,0.00061314885,0.00022437074],"domain_scores_gemma":[0.9406948,0.00021797951,0.0007374681,0.0004659809,0.05731855,0.00056522945],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.00014996614,0.000213511,0.0009568022,0.00026728475,0.000175279,0.0000130187,0.0002399754,0.000097697986,0.00009849326],"category_scores_gemma":[0.07366369,0.00012896526,0.00032111324,0.000051781564,0.00069300906,0.00016149285,0.00008110061,0.00046770455,0.00000782734],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035117543,0.00010980052,0.9805339,0.00022035564,0.00027308392,0.00071703125,0.0011819358,0.0000014080249,0.009304575,0.000037750262,0.006372802,0.0008961955],"study_design_scores_gemma":[0.0036605827,0.002611681,0.978802,0.0019894831,0.0006610471,0.00012149534,0.00826196,0.0000039187294,0.0010854444,0.00007078101,0.0026191662,0.00011239129],"about_ca_topic_score_codex":0.000024719691,"about_ca_topic_score_gemma":0.00001739139,"teacher_disagreement_score":0.073513724,"about_ca_system_score_codex":0.000113568654,"about_ca_system_score_gemma":0.00034153584,"threshold_uncertainty_score":0.93413925},"labels":[],"label_agreement":null},{"id":"W2755639783","doi":"10.1093/cid/cix836","title":"Prevalence of Hypogammaglobulinemia in Adult Invasive Pneumococcal Disease","year":2017,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ottawa Hospital; University of Ottawa","funders":"Ottawa Hospital Research Institute","keywords":"Hypogammaglobulinemia; Medicine; Pneumococcal disease; Streptococcus pneumoniae; Pneumococcal infections; Immunology; Disease; Intensive care medicine; Pediatrics; Antibody; Internal medicine; Microbiology; Antibiotics","score_opus":0.03842731266669636,"score_gpt":0.374570981270801,"score_spread":0.33614366860410466,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2755639783","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99505305,0.00014181847,0.00001024211,0.000988701,0.00059143914,0.0005299862,0.00010478583,0.00009637676,0.0024836145],"genre_scores_gemma":[0.9974761,0.0009767007,0.0000032170067,0.00072925363,0.00039549556,0.00007607369,0.000008481969,0.000021872627,0.000312778],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981279,0.0001366932,0.00078132906,0.00044583328,0.00022732277,0.00028096457],"domain_scores_gemma":[0.99706143,0.0005272025,0.00040139683,0.0010243107,0.00029664332,0.00068899227],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.00018479385,0.0002017777,0.0005264385,0.00012664993,0.0002206198,0.000036270096,0.00023349588,0.0001495572,0.00014723801],"category_scores_gemma":[0.01197177,0.00017168443,0.00044608224,0.00010436865,0.0008115628,0.00019527241,0.00014777065,0.00035900326,0.000089785215],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010696377,0.0018421088,0.9944233,0.0006381418,0.000055164895,0.00020469392,0.000010688169,0.000017580567,0.0005338614,0.0002036,0.00019828498,0.0017656335],"study_design_scores_gemma":[0.002400598,0.000486898,0.9949534,0.0005110498,0.0003709055,0.000007135619,0.000009139973,0.000080635444,0.000084679334,0.0006169804,0.0003074627,0.00017111763],"about_ca_topic_score_codex":0.00002647975,"about_ca_topic_score_gemma":0.00006896133,"teacher_disagreement_score":0.011786977,"about_ca_system_score_codex":0.00005530105,"about_ca_system_score_gemma":0.0005965554,"threshold_uncertainty_score":0.9963508},"labels":[],"label_agreement":null},{"id":"W2755961323","doi":"10.1016/j.annepidem.2017.07.063","title":"The Impact of Opioids on the Incidence of Community-acquired Pneumonia: A large Nested Case-control Study","year":2017,"lang":"en","type":"article","venue":"Annals of Epidemiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Western University; McGill University","funders":"","keywords":"Reinterpretation; Mathematics; Uniqueness; Pfaffian; Isomorphism (crystallography); Lie theory; Pure mathematics; Lie group; Mathematical analysis; Philosophy","score_opus":0.1951414650591414,"score_gpt":0.4694621646427681,"score_spread":0.2743206995836267,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2755961323","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98880124,0.00021587858,0.000025715572,0.009623159,0.00010342243,0.0006625195,0.000075577314,0.000011009682,0.00048146857],"genre_scores_gemma":[0.99828386,0.00012270994,0.0000021304006,0.0014537339,0.00005066223,0.000038937498,0.0000014327561,0.000011176434,0.000035377067],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9948986,0.003650818,0.00084019196,0.0001259865,0.0001086833,0.00037568677],"domain_scores_gemma":[0.98535466,0.011204811,0.0010970295,0.0018454185,0.00040031484,0.00009777862],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.009317773,0.00016615495,0.0009280967,0.00008024927,0.00089689967,0.0000046351975,0.0004914818,0.00013769229,0.000027731963],"category_scores_gemma":[0.024555504,0.00007746173,0.00037551846,0.000098036355,0.000869516,0.000054369208,0.00013282022,0.00041778118,0.00000430705],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038318333,0.0010595173,0.98134726,0.000031109692,0.00075130793,0.000060596238,0.00096430647,0.000098111916,0.01170059,0.0013242676,0.0010893259,0.0011904346],"study_design_scores_gemma":[0.0009036376,0.0047039133,0.99138415,0.00006981505,0.0001018837,0.00019806507,0.0009318875,0.00023746042,0.00034996148,0.00083158736,0.00022810092,0.00005953291],"about_ca_topic_score_codex":0.0032981,"about_ca_topic_score_gemma":0.0005273945,"teacher_disagreement_score":0.015237731,"about_ca_system_score_codex":0.000013107897,"about_ca_system_score_gemma":0.00012075224,"threshold_uncertainty_score":0.98366106},"labels":[],"label_agreement":null},{"id":"W2756128470","doi":"10.1093/ofid/ofx163.490","title":"Pneumococcal Colonization and the Nasopharyngeal Microbiota of Children in Botswana","year":2017,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; St. Joseph’s Healthcare Hamilton; McMaster University","funders":"","keywords":"Streptococcus pneumoniae; Moraxella catarrhalis; Colonization; Haemophilus influenzae; Microbiology; Pneumonia; Medicine; Biology; Immunology; Internal medicine; Antibiotics","score_opus":0.008652177619195964,"score_gpt":0.28286895651468524,"score_spread":0.2742167788954893,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2756128470","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9867349,0.00021755333,0.0000059873983,0.0033525247,0.00012483803,0.0011312487,0.000043243752,0.000020503687,0.008369183],"genre_scores_gemma":[0.99898714,0.00011727439,0.000002099268,0.0005944545,0.000038704165,0.00006211261,0.000019794395,0.000013702326,0.00016474094],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992989,0.000064572814,0.00020537361,0.00018587081,0.00007917498,0.00016615393],"domain_scores_gemma":[0.9992202,0.00005505394,0.00016934768,0.00040847316,0.00005741678,0.000089531284],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012691591,0.00011316333,0.00029793644,0.00007488662,0.0005287895,0.0001468389,0.00020526726,0.000059686095,0.00004351693],"category_scores_gemma":[0.00024069953,0.00007669842,0.00007451058,0.000085022286,0.0004437789,0.00022221121,0.00027189968,0.00011502309,0.000008251875],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013526448,0.00026612583,0.9946365,0.00002088219,0.00006930242,0.000006281557,0.000040347342,0.000011789095,0.0021997981,0.0013429379,0.00032258895,0.000948221],"study_design_scores_gemma":[0.005295364,0.00017716007,0.9927647,0.0000800199,0.00012862153,0.0000750664,0.000021754717,0.000065389155,0.00025067193,0.0005508498,0.00050383655,0.00008653304],"about_ca_topic_score_codex":0.00085150904,"about_ca_topic_score_gemma":0.00042719062,"teacher_disagreement_score":0.0122522,"about_ca_system_score_codex":0.000033606084,"about_ca_system_score_gemma":0.00011723628,"threshold_uncertainty_score":0.40670744},"labels":[],"label_agreement":null},{"id":"W2756402257","doi":"10.1093/ofid/ofx163.1188","title":"Incidence of Invasive Pneumococcal Disease Before and During an Era of Use of Three Different Pneumococcal Conjugate Vaccines in Quebec","year":2017,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université du Québec; Centre hospitalier universitaire de Québec; Institut National de Santé Publique du Québec; Université Laval","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Pneumococcal disease; Serotype; Pediatrics; Incidence (geometry); Pneumococcal polysaccharide vaccine; Booster dose; Toddler; Booster (rocketry); Immunization; Streptococcus pneumoniae; Epidemiology; Vaccination; Conjugate vaccine; Internal medicine; Immunology; Antibody; Antibiotics","score_opus":0.020375692126312774,"score_gpt":0.2924180696193376,"score_spread":0.2720423774930248,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2756402257","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979257,0.00006984794,0.0000051090788,0.0003739932,0.00011305555,0.0011957263,0.00018937848,0.000025859077,0.000101325626],"genre_scores_gemma":[0.99959606,0.000094849696,0.0000036751178,0.000054564993,0.000034537272,0.00010871913,0.000023653518,0.000030085122,0.000053833],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99839294,0.000082601066,0.00060973736,0.00038811914,0.0002240826,0.000302509],"domain_scores_gemma":[0.9977969,0.00012835728,0.0005551852,0.0008638282,0.00022493656,0.0004308122],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000075535805,0.00027524453,0.00077525625,0.00019457508,0.00028820604,0.000113597,0.00031387905,0.000092696326,0.000045268574],"category_scores_gemma":[0.00074821705,0.00022132357,0.00016557655,0.00011442027,0.00044244263,0.0011286896,0.0005676836,0.00020730465,0.0000013865764],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043023066,0.001132144,0.9252082,0.00052129506,0.00009377578,0.00006303045,0.00012755187,0.000046164507,0.07104017,0.0003589808,0.000003197693,0.0009752726],"study_design_scores_gemma":[0.0025429109,0.00076778996,0.98863035,0.00094771787,0.0002544329,0.000020741878,0.000086065644,0.00009382451,0.005628194,0.0008255062,0.000011701449,0.00019078414],"about_ca_topic_score_codex":0.012031028,"about_ca_topic_score_gemma":0.1314276,"teacher_disagreement_score":0.119396575,"about_ca_system_score_codex":0.00007169315,"about_ca_system_score_gemma":0.00035818506,"threshold_uncertainty_score":0.99454796},"labels":[],"label_agreement":null},{"id":"W2756724619","doi":"10.1016/j.ijid.2017.09.016","title":"Epidemiology of invasive pneumococcal and Haemophilus influenzae diseases in Northwestern Ontario, Canada, 2010–2015","year":2017,"lang":"en","type":"article","venue":"International Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Lakehead University; NOSM University","funders":"Canadian Institutes of Health Research; University of Oxford; Wellcome Trust; Wellcome","keywords":"Medicine; Haemophilus influenzae; Streptococcus pneumoniae; Case fatality rate; Population; Epidemiology; Incidence (geometry); Serotype; Vaccination; Conjugate vaccine; Pneumococcal conjugate vaccine; Pediatrics; Virology; Immunology; Environmental health; Microbiology; Internal medicine; Immunization; Biology; Antibody; Antibiotics","score_opus":0.022603989220852768,"score_gpt":0.3122329429792661,"score_spread":0.28962895375841335,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2756724619","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99562037,0.0006083305,0.000011732925,0.0019149781,0.0013850605,0.00013081614,0.00010289129,0.0000072815765,0.00021855383],"genre_scores_gemma":[0.9986149,0.00016326284,0.000005540078,0.0007658814,0.0003286312,0.0000072790613,0.000009296508,0.000011905174,0.000093324255],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985421,0.000082681036,0.00071806664,0.00016050023,0.00031627135,0.00018042486],"domain_scores_gemma":[0.99749506,0.000393665,0.0009082682,0.00022646447,0.0006500602,0.00032647332],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013942808,0.00016255914,0.0005336176,0.00032026207,0.00010753017,0.000018185208,0.00023997556,0.00007320547,0.00007482457],"category_scores_gemma":[0.0014584839,0.00013367065,0.00017296686,0.000039370967,0.0002586476,0.0002923544,0.00010341512,0.00027945888,0.0000017337064],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016785787,0.00034435355,0.99676687,0.000034113615,0.00032786521,0.0007091626,0.000109291585,0.00017839628,0.00037130952,0.000057293182,0.00036718554,0.00056627963],"study_design_scores_gemma":[0.002019372,0.0002849992,0.994615,0.0003044152,0.0001641574,0.00087401585,0.00004820328,0.000009242778,0.00006179675,0.0006343803,0.0008752428,0.00010912929],"about_ca_topic_score_codex":0.49038023,"about_ca_topic_score_gemma":0.9074454,"teacher_disagreement_score":0.41706514,"about_ca_system_score_codex":0.00047673102,"about_ca_system_score_gemma":0.0023439804,"threshold_uncertainty_score":0.54509306},"labels":[],"label_agreement":null},{"id":"W2756830612","doi":"10.1016/j.vaccine.2017.09.055","title":"Investigating the candidacy of a capsular polysaccharide-based glycoconjugate as a vaccine to combat Haemophilus influenzae type a disease: A solution for an unmet public health need","year":2017,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"","keywords":"Glycoconjugate; Haemophilus influenzae; Microbiology; Biology; Pathogen; Virology; Immunology; Medicine; Bioinformatics","score_opus":0.06817860931063122,"score_gpt":0.3540694418760025,"score_spread":0.2858908325653713,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2756830612","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9112177,0.00029146858,0.00056389015,0.08567901,0.0002402374,0.0018248047,0.00006638697,0.00009238135,0.000024127843],"genre_scores_gemma":[0.98688525,0.000013927829,0.00019665714,0.012280245,0.00027655507,0.00017561832,0.00005288084,0.000044911805,0.00007394545],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9982337,0.00010370209,0.0005338405,0.00035948283,0.0002652318,0.0005040402],"domain_scores_gemma":[0.996956,0.00008528577,0.0004723114,0.0011824681,0.00041405097,0.00088991475],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007032583,0.00024662772,0.00051952904,0.00026642348,0.0010408683,0.00010207681,0.00031762375,0.00008136226,0.000031761534],"category_scores_gemma":[0.0020908166,0.0001736747,0.00013977611,0.00038499737,0.000034689794,0.00022859494,0.000092033566,0.00021302322,0.000014369062],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018593177,0.0012662107,0.41161326,0.0010944569,0.0005177118,0.00003385448,0.0019248356,0.0006288597,0.5608387,0.0017546865,0.0072574406,0.011210655],"study_design_scores_gemma":[0.015249504,0.007134537,0.9141085,0.00080599333,0.0004991992,0.00007969989,0.00020607738,0.0152711375,0.0056571425,0.0009065752,0.039456613,0.0006249995],"about_ca_topic_score_codex":0.0030310305,"about_ca_topic_score_gemma":0.00089766,"teacher_disagreement_score":0.55518156,"about_ca_system_score_codex":0.00014872367,"about_ca_system_score_gemma":0.0013619837,"threshold_uncertainty_score":0.8005623},"labels":[],"label_agreement":null},{"id":"W2760973799","doi":"10.1093/pch/9.suppl_a.38a","title":"63 Antibiotic Choices by Pediatric Residents and Recently Graduated Pediatricians in Common Infectious Disease Problems in Children","year":2004,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Children's Hospital","funders":"","keywords":"Medicine; Pediatric Infectious Disease; Amoxicillin; Otitis; Clinical Practice; Antibiotics; Pediatrics; Bacterial meningitis; Infectious disease (medical specialty); Family medicine; Disease; Antibiotic therapy; Meningitis; Internal medicine; Surgery","score_opus":0.008742147321768591,"score_gpt":0.26842151457691504,"score_spread":0.25967936725514645,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2760973799","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97803426,0.0133535685,0.000015235465,0.0059480863,0.0002780703,0.0018831701,0.00009018429,0.00017145468,0.00022595239],"genre_scores_gemma":[0.95281726,0.044024933,0.000014919539,0.0022831587,0.0005942548,0.000029147872,0.00016149708,0.000057584042,0.00001724907],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.996867,0.00021381979,0.0009455086,0.00067105924,0.00046028342,0.0008423572],"domain_scores_gemma":[0.99836373,0.00009041579,0.00035816492,0.00035851344,0.000059956594,0.0007692166],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00059653394,0.00037207318,0.00066578644,0.0013495228,0.0003174381,0.000052360127,0.00013628423,0.00020755046,0.0000045707766],"category_scores_gemma":[0.00020068673,0.00035700307,0.00010019521,0.0026505077,0.000065452594,0.00021405613,0.000078982834,0.0010058347,0.00002745796],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023629138,0.0011446062,0.9966959,0.00043757874,0.000014223349,0.000026915417,0.00025965951,0.0003462088,0.00000691139,0.000029996514,0.00038807758,0.00062633754],"study_design_scores_gemma":[0.004972223,0.00044503313,0.9933719,0.00013128847,0.00011184053,0.00006686471,0.000017551456,0.000020913318,0.0000026853024,0.00034892446,0.00020069057,0.00031009293],"about_ca_topic_score_codex":0.0039745327,"about_ca_topic_score_gemma":0.0017361192,"teacher_disagreement_score":0.030671364,"about_ca_system_score_codex":0.00053966773,"about_ca_system_score_gemma":0.0007013568,"threshold_uncertainty_score":0.9998882},"labels":[],"label_agreement":null},{"id":"W2761246466","doi":"10.1093/pch/8.suppl_b.28bb","title":"Epidemiology of Invasive Pneumococcal and Meningococcal Disease in Southeastern Ontario: is Universal Infant Immunization Cost-Effective?","year":2003,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Queen's University","funders":"","keywords":"Pneumococcal disease; Meningococcal disease; Medicine; Epidemiology; Immunization; Meningococcal vaccine; Disease; Pediatrics; Neisseria meningitidis; Immunology; Streptococcus pneumoniae; Biology; Antibody; Microbiology; Internal medicine","score_opus":0.01914035499031668,"score_gpt":0.28995291606749946,"score_spread":0.27081256107718277,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2761246466","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939372,0.0013642238,0.00042225546,0.0017987821,0.00016446738,0.0018385972,0.000036002606,0.000025108784,0.00041334514],"genre_scores_gemma":[0.9973989,0.00064042944,0.00009131913,0.0016735144,0.00006488534,0.00006066864,0.000026739264,0.000018367686,0.000025176942],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982086,0.00044744962,0.00052781554,0.00031712506,0.000121869714,0.00037715439],"domain_scores_gemma":[0.9984937,0.0004727023,0.00026637217,0.0002386845,0.00008658794,0.00044199213],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007353442,0.00017795725,0.0005419386,0.00037099855,0.00014817965,0.0000023758994,0.000052347288,0.00012903025,0.000031634452],"category_scores_gemma":[0.0006608317,0.00016100304,0.000089248366,0.0004195419,0.00011351743,0.00006981668,0.000041438794,0.0004962152,0.000006963598],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008079253,0.00019599055,0.99558383,0.00016868638,0.000021847189,0.0000105999225,0.0020308793,0.00007760972,0.000064276304,0.0012861261,0.000011355787,0.00046801922],"study_design_scores_gemma":[0.0019235797,0.00041541355,0.9943349,0.0001079662,0.00005931456,0.000027390488,0.00018020667,0.00009795545,0.000018181589,0.00034381953,0.0023692073,0.00012206585],"about_ca_topic_score_codex":0.004490488,"about_ca_topic_score_gemma":0.0061234985,"teacher_disagreement_score":0.0034616818,"about_ca_system_score_codex":0.00027899674,"about_ca_system_score_gemma":0.0010738531,"threshold_uncertainty_score":0.6788305},"labels":[],"label_agreement":null},{"id":"W2761519718","doi":"10.1186/s12879-017-2797-7","title":"Rates of, and risk factors for, septic arthritis in patients with invasive pneumococcal disease: prospective cohort study","year":2017,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta; Provincial Laboratory of Public Health; Dalhousie University","funders":"Merck Canada; Government of Canada; Baylor University; Pfizer; Eli Lilly and Company","keywords":"Septic arthritis; Medicine; Arthritis; Bacteremia; Internal medicine; Disease; Prospective cohort study","score_opus":0.01107377698166085,"score_gpt":0.27449112074418125,"score_spread":0.2634173437625204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2761519718","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953958,0.000083221894,0.000019922996,0.000006514209,0.0000981715,0.003955848,0.00025488148,0.000055736116,0.00012991005],"genre_scores_gemma":[0.9992153,0.000069519054,0.0000033098179,0.000010040911,0.000046109286,0.0005698998,0.000031583404,0.000029555562,0.000024660938],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988421,0.00007652805,0.0002585931,0.00038895835,0.0002088195,0.00022496395],"domain_scores_gemma":[0.99854934,0.00023781697,0.00027034688,0.00043374466,0.00024114316,0.000267586],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007508885,0.00022630177,0.0004608946,0.0001656683,0.00047122614,0.00006158412,0.00006369778,0.00004872933,0.000014576442],"category_scores_gemma":[0.0013898971,0.00016976343,0.00010344722,0.00009335027,0.00027721384,0.00021178517,0.000051777213,0.00012330388,0.000002307789],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003393237,0.0025483745,0.99634236,0.0001340671,0.00024281356,0.000010936611,0.0001631775,0.00002834505,0.0000160355,0.000017910379,0.0000059642043,0.00015066969],"study_design_scores_gemma":[0.007557123,0.0022767927,0.98877746,0.0001780883,0.0006460928,0.0000014354875,0.00014811872,0.00001586471,0.00003073592,0.00016225912,0.000007931871,0.00019809409],"about_ca_topic_score_codex":0.00020453382,"about_ca_topic_score_gemma":0.0016134052,"teacher_disagreement_score":0.0075649186,"about_ca_system_score_codex":0.00007915774,"about_ca_system_score_gemma":0.00025466044,"threshold_uncertainty_score":0.69227517},"labels":[],"label_agreement":null},{"id":"W2762355262","doi":"10.1093/pch/15.suppl_a.34ab","title":"Do All Children With Complicated Pneumonia Need a Procedural Intervention?","year":2010,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children","funders":"","keywords":"Pneumonia; Intervention (counseling); Medicine; Intensive care medicine; Pediatrics; Nursing; Internal medicine","score_opus":0.01265561934841449,"score_gpt":0.2955777276463613,"score_spread":0.28292210829794684,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2762355262","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96389794,0.00029841217,0.00016446675,0.031995635,0.00035235437,0.0013576563,0.00004495765,0.0003637972,0.0015247584],"genre_scores_gemma":[0.9903636,0.00014140883,0.00029803664,0.008118121,0.00074264774,0.00006722056,0.0001405704,0.00005224409,0.00007618073],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99813133,0.000058166723,0.00048435677,0.00043464365,0.00033747623,0.00055402506],"domain_scores_gemma":[0.99845976,0.00003449663,0.00027475337,0.00047131957,0.00016646509,0.0005932293],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033832772,0.00025924164,0.00041209318,0.00032220804,0.00039990796,0.000047264137,0.00015560527,0.00015112365,0.00007340841],"category_scores_gemma":[0.00007434891,0.00019411971,0.00016549755,0.0007174323,0.0000988488,0.00009125231,0.000051459647,0.0011443298,0.00012720481],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006176592,0.0009722872,0.9895436,0.00018067654,0.00015565981,0.000008553493,0.0003308743,0.000006777003,0.0013184958,0.00067900715,0.0031013647,0.0036409025],"study_design_scores_gemma":[0.0024800468,0.00096121186,0.97849876,0.00006972105,0.0001260042,0.0010227747,0.000042616095,0.000044200693,0.00004293344,0.00006520323,0.016413175,0.00023338056],"about_ca_topic_score_codex":0.00018264666,"about_ca_topic_score_gemma":0.0002212781,"teacher_disagreement_score":0.02646561,"about_ca_system_score_codex":0.000087539054,"about_ca_system_score_gemma":0.00035700545,"threshold_uncertainty_score":0.79159725},"labels":[],"label_agreement":null},{"id":"W2763156113","doi":"10.1016/s1473-3099(17)30593-5","title":"Procalcitonin and antibiotic use: imperfect, yet effective","year":2017,"lang":"en","type":"letter","venue":"The Lancet Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University; Montreal Children's Hospital","funders":"","keywords":"Procalcitonin; Medicine; Antibiotics; Respiratory tract infections; Pneumonia; Intensive care medicine; Respiratory infection; Internal medicine; Sepsis; Respiratory system","score_opus":0.022239738854306464,"score_gpt":0.2976145871945098,"score_spread":0.2753748483402033,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2763156113","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.526209,0.00306818,0.000024317342,0.44801664,0.0031734062,0.0054880497,0.00090236246,0.0017292582,0.01138876],"genre_scores_gemma":[0.5868082,0.0007073776,0.0000024414628,0.3982568,0.01144,0.00026918188,0.00019083945,0.00013833868,0.0021868364],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99796945,0.00027952984,0.00023973107,0.00057187,0.0003192497,0.0006201989],"domain_scores_gemma":[0.9974771,0.0006951339,0.00028011185,0.0012453689,0.00013800204,0.00016426313],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00015000888,0.00051626924,0.0010372269,0.00017803667,0.0008642928,0.0003495195,0.00022844272,0.0005341141,0.000037632282],"category_scores_gemma":[0.00084599946,0.00031833205,0.00029731364,0.00013235374,0.0006581,0.00017618928,0.00014768016,0.0018703768,0.00012430754],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042896212,0.000119503326,0.2538412,0.0009531876,0.0005948886,0.00080463133,0.000048445476,0.0000020298196,0.00033340673,0.000025941723,0.74084014,0.0023937526],"study_design_scores_gemma":[0.0014138976,0.0005730156,0.36561775,0.0006982301,0.0015259554,0.0010134155,0.000004243831,0.000014645818,0.00008349994,0.00028565098,0.62835556,0.00041410653],"about_ca_topic_score_codex":0.00011458034,"about_ca_topic_score_gemma":0.000018195968,"teacher_disagreement_score":0.11248454,"about_ca_system_score_codex":0.00013279195,"about_ca_system_score_gemma":0.00020791311,"threshold_uncertainty_score":0.99992687},"labels":[],"label_agreement":null},{"id":"W2764154969","doi":"10.1093/pch/9.suppl_a.34aa","title":"51 Epidemiology, Serotypes Distribution and Antibiotic Susceptibility of Streptococcus Pneumoniae Strains Associated with Invasive Pneumococcal Diseases in a Pediatric Tertiary Care Center in Montreal","year":2004,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Serotype; Streptococcus pneumoniae; Penicillin; Antibiotics; Medicine; Epidemiology; Microbiology; Cephalosporin; Virology; Biology; Internal medicine","score_opus":0.012109543951782157,"score_gpt":0.2775358230758269,"score_spread":0.26542627912404476,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2764154969","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9931874,0.0017042488,0.00001973104,0.0024265768,0.000080142425,0.0015037686,0.0009795618,0.000054117976,0.000044401804],"genre_scores_gemma":[0.99671423,0.002019544,0.000010609444,0.00040491435,0.00014680815,0.00002751386,0.0006526899,0.000022361686,0.0000013098286],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.997269,0.00041462132,0.00087882456,0.0005729559,0.00021294609,0.0006516848],"domain_scores_gemma":[0.9983903,0.00036584077,0.00041456148,0.0002917916,0.00013614593,0.00040132576],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00051454856,0.00029495746,0.0008088861,0.00038338592,0.00014061754,0.000007659223,0.00008549851,0.0002347785,0.000003165748],"category_scores_gemma":[0.001051628,0.00024053584,0.00011739468,0.0008655387,0.00017728453,0.00011134503,0.000058671063,0.0006508361,0.000002078442],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040837906,0.0011613112,0.99631906,0.0007028313,0.000023215014,0.000046058532,0.0007140612,0.00026743326,0.000040400228,0.000029876363,0.000010819152,0.00064409414],"study_design_scores_gemma":[0.0038071116,0.0009273859,0.99413025,0.00031482129,0.00009998756,0.000016817612,0.00036663155,0.000016301436,0.000010687799,0.00011873322,0.000004447099,0.00018680768],"about_ca_topic_score_codex":0.001242724,"about_ca_topic_score_gemma":0.030479541,"teacher_disagreement_score":0.029236818,"about_ca_system_score_codex":0.0007158242,"about_ca_system_score_gemma":0.000912514,"threshold_uncertainty_score":0.9872117},"labels":[],"label_agreement":null},{"id":"W2765632687","doi":"10.1038/s41598-017-15035-y","title":"Penicillin induces alterations in glutamine metabolism in Streptococcus pneumoniae","year":2017,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval; Université Laval","funders":"Canadian Institutes of Health Research; Université Laval","keywords":"Penicillin; Glutamine; Microbiology; Streptococcus pneumoniae; Penicillin binding proteins; Peptidoglycan; Antibiotics; Metabolism; Stringent response; Gene; Bacteria; Gene expression; Biology; Biochemistry; Amino acid; Escherichia coli; Genetics","score_opus":0.028463315189710504,"score_gpt":0.3140213849132363,"score_spread":0.28555806972352576,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2765632687","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9876483,0.000087878005,0.0000067482883,0.0015207408,0.004337277,0.0005675469,0.000003166964,0.000038742663,0.00578958],"genre_scores_gemma":[0.99641865,0.0000076443675,0.000025855994,0.00006986888,0.00012414888,0.000096998134,0.00002034978,0.00001309504,0.0032233978],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9980024,0.00004459336,0.0006351397,0.0006258661,0.00035764888,0.00033432367],"domain_scores_gemma":[0.99800944,0.000022193708,0.00031611766,0.0013811475,0.00012124504,0.00014985348],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010341797,0.00015045128,0.0003222033,0.00052141125,0.0005655745,0.00035287515,0.00013773672,0.000104772946,0.00012116944],"category_scores_gemma":[0.0005909917,0.00012614865,0.000097821736,0.00035254346,0.000294506,0.00037670002,0.00008379397,0.0003004453,0.000041925647],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000005153953,0.0003682531,0.50814354,0.000022717888,0.00001537436,0.0022096506,0.00055393693,0.00008680539,0.48527613,0.00011556786,0.00056255644,0.0026403114],"study_design_scores_gemma":[0.0005584308,0.00003390416,0.931925,0.00012919703,0.000029858173,0.00026307322,0.00010951847,0.00014011259,0.02373833,0.0011936505,0.041698076,0.00018087425],"about_ca_topic_score_codex":0.0001954309,"about_ca_topic_score_gemma":0.0014188105,"teacher_disagreement_score":0.4615378,"about_ca_system_score_codex":0.000077902114,"about_ca_system_score_gemma":0.00034396257,"threshold_uncertainty_score":0.51441926},"labels":[],"label_agreement":null},{"id":"W2765633925","doi":"10.1007/s10096-017-3128-z","title":"Risk factors for pneumococcal endocarditis","year":2017,"lang":"en","type":"article","venue":"European Journal of Clinical Microbiology & Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Provincial Laboratory of Public Health; Dalhousie University","funders":"Merck Canada; Faculty of Medicine and Dentistry, University of Alberta; Canada Research Chairs; Eli Lilly and Company","keywords":"Endocarditis; Medicine; Bacteremia; Incidence (geometry); Mortality rate; Heart disease; Intensive care unit; Population; Internal medicine; Complication; Risk factor; Surgery; Pediatrics; Antibiotics","score_opus":0.04253503727322806,"score_gpt":0.36368160418573,"score_spread":0.32114656691250193,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2765633925","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9924928,0.00017205854,0.00048200815,0.00035884872,0.0034835492,0.00027558045,0.00026579123,0.000053728014,0.002415658],"genre_scores_gemma":[0.99661905,0.00039696667,0.000034502522,0.0005138037,0.0022870095,0.0000029444418,0.000017143038,0.00004248513,0.00008609822],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9972062,0.0008868896,0.0012707136,0.0002717167,0.000058976842,0.0003055168],"domain_scores_gemma":[0.9956975,0.0011244584,0.0017762854,0.0005057903,0.00042111852,0.0004748607],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0011002831,0.00022579284,0.0008916887,0.00013284832,0.00069750636,0.00006810448,0.00029945173,0.00010559923,0.00007871083],"category_scores_gemma":[0.00944368,0.00015826778,0.0015367336,0.000037094982,0.0006840991,0.00013814445,0.00009150483,0.0006719432,0.00007192202],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014387013,0.0006026636,0.97579443,0.000021955522,0.0007669396,0.00022125166,0.000019054149,0.000009455875,0.010931635,0.000016993008,0.0027163264,0.008755418],"study_design_scores_gemma":[0.0038163613,0.0033201019,0.868169,0.000073140654,0.00092960265,0.0007816665,0.000017821403,0.0000015309828,0.00017286636,0.00007566776,0.12250015,0.00014210888],"about_ca_topic_score_codex":0.0000033808858,"about_ca_topic_score_gemma":0.0000033813492,"teacher_disagreement_score":0.119783826,"about_ca_system_score_codex":0.000031235155,"about_ca_system_score_gemma":0.00021759432,"threshold_uncertainty_score":0.9989002},"labels":[],"label_agreement":null},{"id":"W2766248288","doi":"10.1002/psp4.12252","title":"Development of an Adult Physiologically Based Pharmacokinetic Model of Solithromycin in Plasma and Epithelial Lining Fluid","year":2017,"lang":"en","type":"article","venue":"CPT Pharmacometrics & Systems Pharmacology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; Thrasher Research Fund","keywords":"Physiologically based pharmacokinetic modelling; Pharmacokinetics; Plasma concentration; Regimen; Confidence interval; Area under the curve; Minimum inhibitory concentration; Population; Pharmacology; Medicine; Chemistry; Internal medicine; Antibiotics","score_opus":0.06842512572379734,"score_gpt":0.3693630458961107,"score_spread":0.30093792017231336,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2766248288","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99630797,0.00018644596,0.0008188251,0.00016160871,0.0011072666,0.00091143395,0.000074257485,0.00005189568,0.00038030866],"genre_scores_gemma":[0.99729276,0.00019603097,0.0016912686,0.00037366545,0.00021225434,0.00014226242,0.000013900917,0.000037913,0.000039963616],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9971848,0.0002325625,0.001204143,0.0005119834,0.00037261337,0.00049388845],"domain_scores_gemma":[0.99781287,0.00022216563,0.0007943181,0.00035245938,0.0004570689,0.00036111902],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000852577,0.0003375606,0.0010393504,0.0012652652,0.0002692482,0.00002381924,0.0004086191,0.00021697796,0.000045012657],"category_scores_gemma":[0.00020898094,0.00029463114,0.00011624933,0.00055441126,0.00030999113,0.00019855086,0.00016488596,0.00046255544,0.0000062029794],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042637013,0.000981042,0.009230382,0.00079112354,0.0001823679,0.00004731747,0.00032674556,0.008569769,0.9743686,0.000024298253,0.00006200402,0.004989984],"study_design_scores_gemma":[0.011263501,0.00048661188,0.018197874,0.00016359582,0.000319094,0.000042430274,0.00009663851,0.53380895,0.4344124,0.0000059259232,0.00089536986,0.00030761244],"about_ca_topic_score_codex":0.000035287663,"about_ca_topic_score_gemma":0.0000029738524,"teacher_disagreement_score":0.5399562,"about_ca_system_score_codex":0.000120166565,"about_ca_system_score_gemma":0.00047990147,"threshold_uncertainty_score":0.9999506},"labels":[],"label_agreement":null},{"id":"W2766383514","doi":"10.1016/j.jcjd.2017.08.159","title":"Factors Predicting Pneumococcal Vaccination in a Cohort of 2040 Albertans with Type 2 Diabetes","year":2017,"lang":"en","type":"article","venue":"Canadian Journal of Diabetes","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Vaccination; Diabetes mellitus; Cohort; Odds ratio; Logistic regression; Pneumococcal vaccine; Pneumonia; Internal medicine; Pediatrics; Streptococcus pneumoniae; Immunology","score_opus":0.017044933710858762,"score_gpt":0.2528779533191492,"score_spread":0.23583301960829042,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2766383514","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974989,0.00015119485,7.819732e-7,0.00052696734,0.00029733777,0.00014938768,0.000009413002,0.000003665837,0.001362327],"genre_scores_gemma":[0.9997459,0.000005345395,0.000010276054,0.000058414338,0.00010396814,0.0000024318,0.0000031291665,0.000016522958,0.000053983935],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99908406,0.000032619904,0.00034335075,0.00010006214,0.0001491728,0.00029074925],"domain_scores_gemma":[0.9985673,0.000090932575,0.0003904117,0.00021805016,0.00031275186,0.00042059162],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024608662,0.000121605015,0.000375828,0.0004063576,0.00017853681,0.00004057879,0.00014993637,0.00008953692,0.00008279958],"category_scores_gemma":[0.0007546233,0.00008763187,0.00007798517,0.00013989367,0.00009444308,0.0002342132,0.0000073416645,0.0002780172,0.0000015046228],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000023672587,0.000025127105,0.99051887,0.000043552962,0.00011961937,0.000011275117,0.00019984714,0.000022481356,0.008538819,0.000009829626,0.000045242094,0.00046295673],"study_design_scores_gemma":[0.00059195387,0.0006086661,0.9935777,0.00037680962,0.00012147651,0.000003991977,0.000111134126,0.00007233485,0.003942742,0.000025378176,0.00048298517,0.00008482867],"about_ca_topic_score_codex":0.0004654667,"about_ca_topic_score_gemma":0.016780118,"teacher_disagreement_score":0.01631465,"about_ca_system_score_codex":0.00013506094,"about_ca_system_score_gemma":0.0008903816,"threshold_uncertainty_score":0.9363699},"labels":[],"label_agreement":null},{"id":"W2768948822","doi":"10.5430/jha.v6n6p35","title":"Missing the Mark: Inaccuracy of administrative data in identification of hospitalized patients with pneumonia and results of a systematic clinical reclassification process on readmission rates","year":2017,"lang":"en","type":"article","venue":"Journal of Hospital Administration","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Pneumonia; Medicine; Medical diagnosis; Intensive care medicine; Emergency medicine; Medical record; Internal medicine; Pathology","score_opus":0.09465815932943562,"score_gpt":0.423642023744766,"score_spread":0.3289838644153304,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2768948822","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965362,0.000040917443,0.000040016537,0.0022305518,0.00015547039,0.0008533253,0.00005443102,0.0000029636656,0.000086127475],"genre_scores_gemma":[0.9997285,0.00006840219,0.00009089884,0.000008952493,0.00004017409,0.0000056059994,0.000034480538,0.000010064123,0.000012895649],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9966627,0.00017843908,0.0023371896,0.00021813862,0.00051166356,0.00009190688],"domain_scores_gemma":[0.99124295,0.00032226037,0.006633722,0.0007728456,0.0009402477,0.00008795245],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018764301,0.00014103334,0.00059387024,0.0001401609,0.00012373796,0.00005167539,0.00031006115,0.00010794824,9.168662e-7],"category_scores_gemma":[0.0064888233,0.00008218317,0.00007286235,0.00014051315,0.00027736876,0.00056692254,0.000031176594,0.00024348054,2.5890415e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004222159,0.0040210523,0.9745381,0.0046076328,0.00020094322,0.000017480961,0.0012407734,0.000003550522,0.010160666,0.00008696148,0.00003345152,0.0008672621],"study_design_scores_gemma":[0.0026094157,0.0122669935,0.96738344,0.0062937993,0.00026111063,0.000020926507,0.00077072973,0.00021732466,0.0099698,0.00012071275,0.0000030643664,0.00008269871],"about_ca_topic_score_codex":0.000006127628,"about_ca_topic_score_gemma":0.000007655305,"teacher_disagreement_score":0.008245941,"about_ca_system_score_codex":0.000033413726,"about_ca_system_score_gemma":0.00050918077,"threshold_uncertainty_score":0.7768196},"labels":[],"label_agreement":null},{"id":"W2770783505","doi":"10.1016/j.mimet.2017.11.017","title":"PCR-based discrimination of emerging Streptococcus pneumoniae serotypes 22F and 33F","year":2017,"lang":"en","type":"article","venue":"Journal of Microbiological Methods","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Nova Scotia Health Authority; Dalhousie University","funders":"Canadian Immunization Research Network; Nova Scotia Health Research Foundation; BD","keywords":"Serotype; Streptococcus pneumoniae; Microbiology; Virology; Biology; Pneumococcal conjugate vaccine; Antibiotics","score_opus":0.06484721865736576,"score_gpt":0.43274637535645705,"score_spread":0.3678991566990913,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2770783505","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9844171,0.00031612406,0.011536718,0.0027473243,0.00029020308,0.00017797337,0.0000053851454,0.000008970154,0.0005002207],"genre_scores_gemma":[0.9778179,0.00012315664,0.021688724,0.00019200165,0.000115549665,0.0000030340473,0.0000010246101,0.0000068176137,0.00005182395],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998788,0.0003912071,0.00049386534,0.0001202862,0.000074905416,0.00013172046],"domain_scores_gemma":[0.9983531,0.00032424275,0.00078646984,0.00019934082,0.00023552228,0.00010128279],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001502876,0.00011670783,0.0005510052,0.00012766008,0.00017099915,0.0000237088,0.0001276012,0.0001370024,0.000042298365],"category_scores_gemma":[0.0015608845,0.00006708581,0.00022201246,0.000045455454,0.00040043794,0.00008353281,0.000049820424,0.0003031174,9.918679e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018872388,0.0001258724,0.041309126,0.00006278427,0.00007167812,0.000018057372,0.000057424804,0.000010027624,0.9236479,0.00016274831,0.000027414992,0.034318242],"study_design_scores_gemma":[0.007938233,0.0021491323,0.6924234,0.00061390083,0.0005619967,0.00042335756,0.00021840587,0.0002041128,0.28560835,0.0015538353,0.008080523,0.00022474861],"about_ca_topic_score_codex":0.000004074366,"about_ca_topic_score_gemma":0.0000013981368,"teacher_disagreement_score":0.6511143,"about_ca_system_score_codex":0.00002530352,"about_ca_system_score_gemma":0.0000601006,"threshold_uncertainty_score":0.273568},"labels":[],"label_agreement":null},{"id":"W2772115632","doi":"10.1371/journal.pone.0189163","title":"Comparison of sequential multiplex PCR, sequetyping and whole genome sequencing for serotyping of Streptococcus pneumoniae","year":2017,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; Institut National de Santé Publique du Québec","funders":"Pfizer Canada; Pfizer","keywords":"Serotype; Streptococcus pneumoniae; Multiplex polymerase chain reaction; Microbiology; Multiplex; Biology; Virology; Pneumococcal infections; GenBank; Polymerase chain reaction; Antibiotics; Gene; Genetics","score_opus":0.18472974377069754,"score_gpt":0.3572116607687357,"score_spread":0.17248191699803814,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2772115632","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976129,0.0001430695,0.00036665524,0.00032465748,0.000051054376,0.00095951854,0.0000834,0.00003826471,0.00042049648],"genre_scores_gemma":[0.9986444,0.000020036829,0.0009286692,0.00003986289,0.00013674799,0.00006127938,0.000019107605,0.00002569747,0.00012418932],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988654,0.000026441263,0.0004452846,0.00023592262,0.00019817385,0.0002287381],"domain_scores_gemma":[0.99866664,0.00007176952,0.00044621702,0.00045842936,0.00024536767,0.000111581176],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019217569,0.00014358957,0.00060652767,0.0001158123,0.0003293835,0.000025684081,0.00011689826,0.00011567062,0.000014444586],"category_scores_gemma":[0.000276113,0.00013771094,0.00010288974,0.000048522437,0.00020126777,0.00013864518,0.00008453634,0.00017382117,0.0000029898085],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002989487,0.00030961228,0.21917544,0.0008784367,0.00026416976,0.0000020854525,0.000437723,0.000031459516,0.77847844,0.000042060277,0.0000021113622,0.00034858388],"study_design_scores_gemma":[0.0028925324,0.00094164925,0.22854397,0.001720062,0.00085452787,0.000008856959,0.0005350575,0.009744808,0.7539358,0.000093251605,0.00044130255,0.00028814864],"about_ca_topic_score_codex":0.000058792844,"about_ca_topic_score_gemma":0.000046416055,"teacher_disagreement_score":0.024542583,"about_ca_system_score_codex":0.000070880844,"about_ca_system_score_gemma":0.00012970492,"threshold_uncertainty_score":0.5615689},"labels":[],"label_agreement":null},{"id":"W2772756703","doi":"10.1016/j.vaccine.2017.11.054","title":"Incidence of invasive pneumococcal disease before and during an era of use of three different pneumococcal conjugate vaccines in Quebec","year":2017,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval; Institut National de Santé Publique du Québec; Centre hospitalier universitaire de Québec","funders":"","keywords":"Pneumococcal disease; Pneumococcal infections; Streptococcus pneumoniae; Incidence (geometry); Pneumococcal conjugate vaccine; Medicine; Conjugate; Immunology; Virology; Intensive care medicine; Microbiology; Biology; Antibiotics; Mathematics","score_opus":0.021673899078609084,"score_gpt":0.27682036138540156,"score_spread":0.2551464623067925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2772756703","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985653,0.00006938403,0.0000059054855,0.0006953041,0.00008604714,0.000509331,0.000042154177,0.000017353997,0.0000092296095],"genre_scores_gemma":[0.9996767,0.00010756769,0.0000147449455,0.000024604957,0.00006972444,0.000022825665,0.00000952247,0.000020992817,0.000053287196],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986626,0.000048487997,0.00059747766,0.00029161433,0.0001833156,0.0002165327],"domain_scores_gemma":[0.9982673,0.00009640249,0.00042652249,0.0007580058,0.00019290645,0.00025888238],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000094714494,0.00021351915,0.000668542,0.00019660436,0.000106817715,0.000019975712,0.00016973152,0.00009390199,0.000030484718],"category_scores_gemma":[0.0005304416,0.00016033252,0.00010146913,0.000098144854,0.000083539686,0.0004146747,0.000183671,0.00024021797,8.4166845e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030559616,0.000260652,0.6098597,0.00037800003,0.00003230305,0.000042614414,0.00016315181,0.000015102623,0.38841695,0.000054855198,7.898035e-7,0.0004702776],"study_design_scores_gemma":[0.002530931,0.000516866,0.96012515,0.00080413726,0.00012488732,0.000021411692,0.000042038177,0.00018726516,0.03539114,0.00012785422,0.000008666076,0.000119665274],"about_ca_topic_score_codex":0.003993046,"about_ca_topic_score_gemma":0.068357565,"teacher_disagreement_score":0.3530258,"about_ca_system_score_codex":0.00003829803,"about_ca_system_score_gemma":0.00014616507,"threshold_uncertainty_score":0.9486425},"labels":[],"label_agreement":null},{"id":"W2773600626","doi":"10.1097/inf.0000000000001850","title":"Invasive Haemophilus Influenzae Type B Infections in Children with Cancer in the Era of Infant HIB Immunization Programs (1991–2014)","year":2017,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Izaak Walton Killam Health Centre; Public Health Agency of Canada; Royal University Hospital; University of Saskatchewan; University of Alberta; Dalhousie University; BC Children's Hospital; University of British Columbia; Stollery Children's Hospital","funders":"","keywords":"Medicine; Immunization; Hib vaccine; Pediatrics; Epidemiology; Haemophilus influenzae; Pediatric cancer; Vaccination; Booster (rocketry); Active immunization; Booster dose; Cancer; Immunology; Conjugate vaccine; Internal medicine; Antibody; Antibiotics; Microbiology","score_opus":0.01181835892544621,"score_gpt":0.27882590613746827,"score_spread":0.2670075472120221,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2773600626","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961249,0.0006483504,0.00001496332,0.001496174,0.00034224635,0.0009908489,0.000013925889,0.000030059262,0.00033853424],"genre_scores_gemma":[0.9954975,0.003189938,0.00000332001,0.00036011453,0.0007932942,0.00010600722,0.0000085815855,0.000027037642,0.000014185805],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984052,0.0002461129,0.00046407877,0.000179646,0.00037507463,0.00032987946],"domain_scores_gemma":[0.99816453,0.00011516253,0.00057955645,0.0006442694,0.00033230236,0.00016417686],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00054511346,0.00021743528,0.0002992623,0.0003505728,0.00092430465,0.00014828253,0.00030829993,0.00009344825,0.00004957745],"category_scores_gemma":[0.000551021,0.00011757673,0.00013166787,0.00073354656,0.00022955179,0.00030936633,0.000070177135,0.0011631605,0.000013135853],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011268578,0.0006806747,0.9947425,0.000035639536,0.00011576727,0.000036791742,0.00060246774,0.0021491204,0.00006149207,0.000033956458,0.000108458495,0.0013204563],"study_design_scores_gemma":[0.0022423924,0.00052714517,0.994655,0.00011842751,0.00057619944,0.0011450639,0.00006199669,0.000038898343,0.00000575033,0.0003459224,0.0001333037,0.00014989273],"about_ca_topic_score_codex":0.0017410041,"about_ca_topic_score_gemma":0.0018068466,"teacher_disagreement_score":0.0025415877,"about_ca_system_score_codex":0.00017014418,"about_ca_system_score_gemma":0.0010244603,"threshold_uncertainty_score":0.7109097},"labels":[],"label_agreement":null},{"id":"W2783514843","doi":"10.3201/eid2402.171268","title":"Spread of Meropenem-Resistant<i>Streptococcus pneumoniae</i>Serotype 15A-ST63 Clone in Japan, 2012–2014","year":2018,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Serotype; Meropenem; Streptococcus pneumoniae; Multilocus sequence typing; Microbiology; Pneumococcal infections; Biology; Virology; Gene; Antibiotic resistance; Genetics; Genotype; Antibiotics","score_opus":0.009791585567871856,"score_gpt":0.27969603793840947,"score_spread":0.2699044523705376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2783514843","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9871285,0.0007148356,0.000053153974,0.0006127566,0.0007791916,0.0007167619,0.000057240853,0.00029566168,0.00964189],"genre_scores_gemma":[0.9977479,0.00017365791,0.000008717742,0.00065225153,0.0005198298,0.00013243234,0.000024984674,0.00006279986,0.00067745266],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99779314,0.00013538728,0.0006516043,0.0005081742,0.0003727125,0.00053896866],"domain_scores_gemma":[0.99823236,0.00011044959,0.0002550056,0.0006727497,0.00039339543,0.00033604752],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00018233203,0.00034722706,0.0006209453,0.000526474,0.00024181312,0.000027593565,0.00015478088,0.0001498092,0.001063308],"category_scores_gemma":[0.00034078798,0.0003140679,0.00026822934,0.00079063815,0.00039083167,0.00024621762,0.000096106094,0.0002803664,0.000382776],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000107809276,0.0009469341,0.88103145,0.00018734368,0.00015887717,0.0000422606,0.00018592345,0.000052539064,0.10900239,0.00017270565,0.005879416,0.0022323374],"study_design_scores_gemma":[0.0024627822,0.0016659737,0.9504672,0.0004448592,0.000396328,0.000038247315,0.00014047291,0.00008367723,0.0066287178,0.00021293326,0.03699198,0.00046677716],"about_ca_topic_score_codex":0.00040488853,"about_ca_topic_score_gemma":0.0007234795,"teacher_disagreement_score":0.10237367,"about_ca_system_score_codex":0.00013266974,"about_ca_system_score_gemma":0.00025366884,"threshold_uncertainty_score":0.99993116},"labels":[],"label_agreement":null},{"id":"W2786186356","doi":"10.1186/s13063-018-2457-2","title":"Short-course antimicrobial therapy for paediatric respiratory infections (SAFER): study protocol for a randomized controlled trial","year":2018,"lang":"en","type":"article","venue":"Trials","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Impact; University of Ottawa; McMaster University","funders":"Physicians' Services Incorporated Foundation; Hamilton Health Sciences","keywords":"Medicine; Randomized controlled trial; Amoxicillin; Pneumonia; Clinical trial; Internal medicine; Pediatrics; Intensive care medicine; Antibiotics","score_opus":0.1225554083451526,"score_gpt":0.461433907864674,"score_spread":0.33887849951952137,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2786186356","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.11148744,0.000015810741,0.0020017256,0.0004953903,0.0019126779,0.8833997,0.000039305905,0.00023124501,0.00041666257],"genre_scores_gemma":[0.11492283,0.0000039647807,0.00007182659,0.00078436173,0.009500243,0.8742559,0.000006523411,0.00006319383,0.00039113802],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.99453664,0.0019514943,0.0022779973,0.0005040208,0.0002811804,0.0004486796],"domain_scores_gemma":[0.99264556,0.0051848995,0.00069047173,0.0004988784,0.0007902852,0.00018988443],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0131765455,0.00038897034,0.0038300322,0.00042814715,0.00060226145,0.00008280263,0.0001244402,0.00026937108,0.00016097967],"category_scores_gemma":[0.008033816,0.00023937807,0.002121419,0.0003688527,0.0002324889,0.00010049535,0.000021216845,0.00018612038,0.0000254998],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.9713761,0.005451234,0.00039499666,0.00004289247,0.0015668864,0.0000020409684,0.00016902143,0.0000021957167,0.010928468,0.000061004186,0.008211629,0.001793486],"study_design_scores_gemma":[0.9282011,0.014432732,0.0001525278,0.000029809193,0.0019460962,0.00000428005,0.00003547824,0.00002949541,0.0016002494,0.0001081789,0.053218324,0.0002417365],"about_ca_topic_score_codex":0.0000060483453,"about_ca_topic_score_gemma":0.000018036302,"teacher_disagreement_score":0.045006696,"about_ca_system_score_codex":0.00006444555,"about_ca_system_score_gemma":0.0008289833,"threshold_uncertainty_score":0.97615546},"labels":[],"label_agreement":null},{"id":"W2789481239","doi":"10.1371/journal.pone.0191750","title":"Coronary artery calcium before and after hospitalization with pneumonia: The MESA study","year":2018,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; University of Ottawa","funders":"National Center for Advancing Translational Sciences; National Heart, Lung, and Blood Institute; National Institutes of Health","keywords":"Medicine; Pneumonia; Internal medicine; Myocardial infarction; Epidemiology; Coronary artery calcium; Coronary artery disease; Cardiology","score_opus":0.022573833231743074,"score_gpt":0.24397063501817418,"score_spread":0.2213968017864311,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2789481239","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99693435,0.000031299838,0.000029106266,0.0016906151,0.00003979058,0.00071375683,0.0000042764036,0.00006075817,0.00049603445],"genre_scores_gemma":[0.9982311,0.000005488503,0.00001982622,0.0008264196,0.00025558544,0.00012192181,0.0000034452582,0.000018794552,0.0005173971],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99932045,0.000033886143,0.00011249733,0.00017107771,0.00022611451,0.00013595884],"domain_scores_gemma":[0.9995041,0.000014548494,0.00003289691,0.0002489445,0.00012586702,0.00007364699],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006994563,0.000103263475,0.00015933087,0.000045881552,0.00016351725,0.000019467376,0.00003421519,0.000042447147,0.00005405387],"category_scores_gemma":[0.000015867858,0.00005678447,0.000017342134,0.00013183059,0.00017739456,0.00007194756,0.000029135696,0.00011215788,0.000037658156],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000078806406,0.0020761827,0.9880048,0.000028084507,0.00031962304,0.000065332104,0.0017557957,8.644733e-8,0.007437876,0.000009119783,0.000028677974,0.00019563021],"study_design_scores_gemma":[0.0007060784,0.0049164942,0.9923139,0.0000925403,0.0005016047,0.00007392692,0.0004522996,0.000053843112,0.0006456073,0.000019107933,0.0001498726,0.00007471402],"about_ca_topic_score_codex":0.0000066262737,"about_ca_topic_score_gemma":0.00017990547,"teacher_disagreement_score":0.0067922687,"about_ca_system_score_codex":0.00002131981,"about_ca_system_score_gemma":0.000032236137,"threshold_uncertainty_score":0.23156033},"labels":[],"label_agreement":null},{"id":"W2790181287","doi":"10.14745/ccdr.v42i12a03","title":"Immunization guidance products: Different levels of detail for different uses","year":2016,"lang":"en","type":"article","venue":"Canada Communicable Disease Report","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Immunization; Variety (cybernetics); Agency (philosophy); Confusion; Statement (logic); Political science; Expert opinion; Public relations; Medicine; Medical education; Computer science; Psychology; Sociology; Immunology","score_opus":0.03630382512457254,"score_gpt":0.277392072832803,"score_spread":0.24108824770823045,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2790181287","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9910798,0.0010529069,0.0008632193,0.0053271004,0.00028693877,0.0007498702,0.00022752753,0.000050871648,0.00036173526],"genre_scores_gemma":[0.997015,0.00012309715,0.000045641056,0.00025685906,0.000053461798,0.00014151963,0.000057961624,0.000029030718,0.0022774348],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986084,0.00007559994,0.0005528375,0.0002224906,0.00029735887,0.00024327851],"domain_scores_gemma":[0.99715775,0.00016919815,0.00028069047,0.0016019591,0.0005148001,0.00027558426],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012554738,0.0001760857,0.0003949159,0.00005761436,0.00018113483,0.000007991261,0.00018828361,0.000041309853,0.000058992096],"category_scores_gemma":[0.00093959324,0.00010849845,0.00011020993,0.00012392714,0.00011386707,0.00006476371,0.00009777228,0.00007887197,5.344226e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018945834,0.000700167,0.8131812,0.0008024068,0.00034529742,0.00020158649,0.000024939798,0.000016556603,0.17501032,0.00047502888,0.0056127794,0.0034402295],"study_design_scores_gemma":[0.0011057865,0.00009412102,0.89268196,0.000596574,0.0002814054,0.0000803075,0.000032329852,0.000038120237,0.025213085,0.00010934792,0.07955598,0.00021098783],"about_ca_topic_score_codex":0.006432979,"about_ca_topic_score_gemma":0.030554539,"teacher_disagreement_score":0.14979723,"about_ca_system_score_codex":0.0003219909,"about_ca_system_score_gemma":0.0017060093,"threshold_uncertainty_score":0.9871353},"labels":[],"label_agreement":null},{"id":"W2791338989","doi":"10.1177/1715163518755413","title":"Pharmacy-initiated immunizations in the emergency department—HaliVax PIIE","year":2018,"lang":"en","type":"article","venue":"Canadian Pharmacists Journal / Revue des Pharmaciens du Canada","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Pharmacy; Emergency department; Medical emergency; Medicine; Family medicine; Emergency medicine; Nursing","score_opus":0.06998124331559415,"score_gpt":0.33127985778467833,"score_spread":0.2612986144690842,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2791338989","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98290867,0.0006075587,0.000080104044,0.0014371384,0.00344042,0.00068008323,0.00033055455,0.000043046304,0.010472421],"genre_scores_gemma":[0.98588055,0.0034715848,0.000028506687,0.008315142,0.0016010803,0.000043019598,0.00006712538,0.000052586875,0.000540411],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9971481,0.00033276365,0.0007317477,0.000317591,0.00045200143,0.0010178046],"domain_scores_gemma":[0.99717396,0.000070420465,0.00020249434,0.0003525356,0.00072748656,0.0014730815],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00062398287,0.00034580944,0.00032625181,0.0005534901,0.001629253,0.00010667296,0.0005513995,0.00005659585,0.003392058],"category_scores_gemma":[0.00020528756,0.00028890217,0.0001686272,0.0016542355,0.00028402705,0.00029908752,0.000031339157,0.00088688673,0.000069167174],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003945051,0.00093378837,0.2157994,0.00039582653,0.0013885746,0.22841181,0.0076386235,0.0005393847,0.055006314,0.00031777448,0.44553155,0.043642446],"study_design_scores_gemma":[0.0031354816,0.0001252015,0.0017451346,0.000031139396,0.00033809547,0.4588241,0.000049366914,0.0014138425,0.0021794187,0.00004651288,0.5316246,0.00048709032],"about_ca_topic_score_codex":0.017647292,"about_ca_topic_score_gemma":0.1923295,"teacher_disagreement_score":0.23041229,"about_ca_system_score_codex":0.0015680298,"about_ca_system_score_gemma":0.004630337,"threshold_uncertainty_score":0.9999563},"labels":[],"label_agreement":null},{"id":"W2791370380","doi":"10.3390/children5030036","title":"Trends in Pediatric Complicated Pneumonia in an Ontario Local Health Integration Network","year":2018,"lang":"en","type":"article","venue":"Children","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Children's Hospital of Eastern Ontario; University of Saskatchewan","funders":"","keywords":"Medicine; Empyema; Pneumonia; Incidence (geometry); Pediatrics; Pneumococcal conjugate vaccine; Parapneumonic effusion; Streptococcus pneumoniae; Pleural effusion; Internal medicine; Surgery; Antibiotics","score_opus":0.022232442218048883,"score_gpt":0.3066267868088817,"score_spread":0.28439434459083285,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2791370380","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99683934,0.000051555457,0.00021815156,0.0011476525,0.0001486814,0.00021649299,0.0000027325386,0.00006496969,0.0013104028],"genre_scores_gemma":[0.99781924,0.0000126475825,0.000047963742,0.001213395,0.0005861035,0.000014584855,0.00015550858,0.000014519407,0.00013600745],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989506,0.00007320041,0.000310144,0.00026021473,0.00010263183,0.00030322224],"domain_scores_gemma":[0.9994947,0.000010420332,0.00006710484,0.0002368818,0.00003660237,0.00015430967],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017523754,0.00012574444,0.00024792942,0.00037805963,0.00009575986,0.000013054443,0.0000697799,0.00009961116,0.00009763574],"category_scores_gemma":[0.0000060839952,0.00010767927,0.000041817068,0.0008850213,0.00007255197,0.000080338,0.000018997132,0.00036579592,0.000051415573],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024522744,0.0002247457,0.9806156,0.0000026106327,0.000004748589,0.0000035897363,0.00055354834,0.00007009933,0.000111382295,0.000044751134,0.0007378017,0.017606588],"study_design_scores_gemma":[0.00084896444,0.000741355,0.9972078,0.00003345436,0.000012603788,0.0000421164,0.000013523902,0.00033036486,0.000014651644,0.000050292703,0.0006076417,0.00009719907],"about_ca_topic_score_codex":0.009840324,"about_ca_topic_score_gemma":0.33418575,"teacher_disagreement_score":0.3243454,"about_ca_system_score_codex":0.0003794364,"about_ca_system_score_gemma":0.00021856376,"threshold_uncertainty_score":0.9967532},"labels":[],"label_agreement":null},{"id":"W2791566978","doi":"10.14745/ccdr.v42i12a05","title":"Summary of NACI Statement: Interim Recommendations on the Use of Pneumococcal Vaccines in Immunocompetent Adults 65 Years of Age and Older","year":2016,"lang":"en","type":"article","venue":"Canada Communicable Disease Report","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"Centers for Disease Control and Prevention; Association of Medical Microbiology and Infectious Disease Canada; Public Health Agency; Public Health Agency of Canada","keywords":"Medicine; Pneumococcal conjugate vaccine; Interim; Immunogenicity; Pneumococcal pneumonia; Pneumococcal vaccine; Pediatrics; Pneumonia; Interim analysis; Population; Streptococcus pneumoniae; Pneumococcal infections; Clinical trial; Immunology; Internal medicine; Environmental health; Antigen","score_opus":0.04066404234096992,"score_gpt":0.28316920356281616,"score_spread":0.24250516122184623,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2791566978","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961901,0.00018425682,0.0000034506147,0.0028651694,0.0000695105,0.00036623562,0.00012426043,0.0000059385256,0.00019109061],"genre_scores_gemma":[0.9989889,0.00052627857,0.000020291865,0.0001681811,0.000004946816,0.00003600208,0.000036973037,0.0000111597565,0.0002072271],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988145,0.00013176998,0.0006358052,0.00011988244,0.00017322614,0.00012478867],"domain_scores_gemma":[0.9982188,0.0003689255,0.00028769588,0.00088165654,0.00012740388,0.000115561495],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019715345,0.000094176954,0.0002885068,0.00009325416,0.00004193915,0.000003671806,0.00011762532,0.00002568523,0.00006203964],"category_scores_gemma":[0.00031805845,0.00006065287,0.00006549583,0.00013746165,0.00011618994,0.00006105607,0.00012442538,0.000108973516,1.7227158e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011784193,0.0023390243,0.83530515,0.0008988349,0.0007487376,0.0022304424,0.0006167394,0.00006587882,0.12470381,0.00065983104,0.010314806,0.02093832],"study_design_scores_gemma":[0.0010991007,0.00012885779,0.9354241,0.0021081315,0.00007802079,0.00003473127,0.0002992666,0.000027072512,0.0010654052,0.000021556194,0.05961576,0.00009801966],"about_ca_topic_score_codex":0.0496072,"about_ca_topic_score_gemma":0.063758224,"teacher_disagreement_score":0.12363841,"about_ca_system_score_codex":0.0001014318,"about_ca_system_score_gemma":0.00062235096,"threshold_uncertainty_score":0.95672154},"labels":[],"label_agreement":null},{"id":"W2793371560","doi":"10.1139/cjm-2017-0662","title":"<i>spd1672</i>, a novel in vivo-induced gene, affects inflammatory response in a murine model of <i>Streptococcus pneumoniae</i> infection","year":2018,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Proinflammatory cytokine; In vivo; Streptococcus pneumoniae; Biology; Microbiology; Mutant; Gene expression; Immune system; Tumor necrosis factor alpha; Immunology; Gene; Inflammation; Genetics; Antibiotics","score_opus":0.018655300091033163,"score_gpt":0.25051861368588546,"score_spread":0.2318633135948523,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2793371560","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982389,0.00009110787,0.000054010718,0.00066440075,0.00037022715,0.00031679217,0.000047295347,0.000006935056,0.00021029524],"genre_scores_gemma":[0.99900615,0.000014675198,0.00006186105,0.0006936687,0.00013190172,0.00000932198,0.0000019874974,0.000022693628,0.00005775251],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998485,0.00018848167,0.000650513,0.00019597742,0.00005359069,0.0004264038],"domain_scores_gemma":[0.99873316,0.00009230853,0.00033495395,0.00023068876,0.00024011424,0.00036877862],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00070986897,0.00018724636,0.0005765641,0.0014714377,0.000058371224,0.0000068899144,0.00012125353,0.0003078451,0.000049227012],"category_scores_gemma":[0.00025046553,0.00017328991,0.00018068931,0.0004515026,0.00026273343,0.0000929628,0.00001844606,0.0005059344,0.000006953259],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028311857,0.00008375866,0.10343491,0.00003016349,0.000104419945,0.00019311976,0.00038944147,0.00034498365,0.8949016,0.000010966971,0.00017324642,0.000050293427],"study_design_scores_gemma":[0.008221146,0.005026672,0.17273423,0.0005534819,0.00033022754,0.0056908345,0.000107307416,0.0003674191,0.7959344,0.000052939118,0.010475979,0.00050541485],"about_ca_topic_score_codex":0.0011822291,"about_ca_topic_score_gemma":0.06722851,"teacher_disagreement_score":0.09896722,"about_ca_system_score_codex":0.00037760966,"about_ca_system_score_gemma":0.0031007011,"threshold_uncertainty_score":0.94979215},"labels":[],"label_agreement":null},{"id":"W2793850659","doi":"10.1093/ecco-jcc/jjx180.642","title":"P515 Manipulating the microbiome in paediatric acute severe colitis with a cocktail of antibiotics: A pilot randomised controlled trial","year":2018,"lang":"en","type":"article","venue":"Journal of Crohn s and Colitis","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation","funders":"","keywords":"Medicine; Metronidazole; Antibiotics; Internal medicine; Placebo; Amoxicillin; Randomized controlled trial","score_opus":0.013928252311533907,"score_gpt":0.26243961438118224,"score_spread":0.24851136206964833,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2793850659","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99682516,0.00020797929,0.000039757408,0.0005763717,0.0002549025,0.0012160254,0.000012693748,0.0000053813487,0.0008617061],"genre_scores_gemma":[0.99856436,0.0002140192,0.00007175056,0.00033582366,0.0006285219,0.0000040557466,7.3796537e-7,0.0000131633815,0.00016754618],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9985623,0.00015508865,0.0007390957,0.000104898776,0.00022059614,0.00021802093],"domain_scores_gemma":[0.9985152,0.00026155147,0.00058654865,0.00011922431,0.00039809544,0.00011941809],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000574412,0.00013562426,0.00076468254,0.00023100249,0.00012582775,0.000036671292,0.00007189558,0.00007011031,0.000049122293],"category_scores_gemma":[0.00013147536,0.000074294985,0.0001612576,0.0002951501,0.00022289674,0.000082547565,0.000021000153,0.00024350571,0.0000013485844],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.9794413,0.00050297973,0.01159739,0.00008688815,0.0007743617,0.0005558448,0.0005325418,0.0000053308304,0.0051343413,0.00010787399,0.0004541715,0.0008070052],"study_design_scores_gemma":[0.6979806,0.008420319,0.28736633,0.00033436457,0.0006824928,0.0031404537,0.00029374825,0.00006900058,0.0004754538,0.000051414834,0.0010649697,0.00012085815],"about_ca_topic_score_codex":0.000041819047,"about_ca_topic_score_gemma":0.000090156274,"teacher_disagreement_score":0.28146067,"about_ca_system_score_codex":0.00004304493,"about_ca_system_score_gemma":0.0003021831,"threshold_uncertainty_score":0.30296618},"labels":[],"label_agreement":null},{"id":"W2794306055","doi":"10.14745/ccdr.v42i04a02","title":"Evaluation of the Enhanced Invasive Pneumococcal Disease Surveillance System (eIPDSS) Pilot Project","year":2016,"lang":"en","type":"article","venue":"Canada Communicable Disease Report","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"University of Saskatchewan; Public Health Agency of Canada","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Disease surveillance; Data quality; Medicine; Pneumococcal disease; Audit; Data collection; Disease; Operations management; Engineering; Pathology; Business","score_opus":0.0430792702424426,"score_gpt":0.292136551010822,"score_spread":0.24905728076837938,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2794306055","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9904844,0.00053801056,0.000020343246,0.0020857267,0.00040902328,0.0014856133,0.00013853805,0.00005739891,0.0047809416],"genre_scores_gemma":[0.99883896,0.000050379687,0.0000024522412,0.00017345775,0.000058348094,0.0003153793,0.000027247337,0.000024844741,0.000508917],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99693835,0.0006947866,0.000548831,0.00028124146,0.0012693553,0.0002674536],"domain_scores_gemma":[0.9955643,0.00023687149,0.00038228105,0.0022607755,0.0011332573,0.00042255808],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010860395,0.00018359724,0.00034425154,0.000056985253,0.00027308444,0.000010115768,0.00029414665,0.00003392906,0.000040775307],"category_scores_gemma":[0.0028040798,0.00010468474,0.00015481202,0.00030849053,0.00018517161,0.00007212187,0.00015729948,0.00014171012,0.0000026613322],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005938734,0.0008362624,0.8038848,0.0012580992,0.0006779782,0.0011183006,0.000057316982,0.00028915075,0.183983,0.0003266659,0.0045230896,0.0024514433],"study_design_scores_gemma":[0.0016071466,0.000075571676,0.9841905,0.0012595978,0.00075989414,0.00014304215,0.0001373667,0.000232026,0.0028422272,0.00003855838,0.008476817,0.00023724552],"about_ca_topic_score_codex":0.034449834,"about_ca_topic_score_gemma":0.16894096,"teacher_disagreement_score":0.18114077,"about_ca_system_score_codex":0.0011459205,"about_ca_system_score_gemma":0.022312328,"threshold_uncertainty_score":0.98323023},"labels":[],"label_agreement":null},{"id":"W2794504687","doi":"10.1093/pch/15.suppl_a.37a","title":"Effects Of Heptavalent Pneumococcal Conjugate Vaccine (Pcv7) On Invasive Pneumococcal Disease (Ipd) In Central And Northern Saskatchewan, 2000 –2008","year":2010,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Pneumococcal disease; Medicine; Pneumococcal conjugate vaccine; Streptococcus pneumoniae; Disease; Pediatrics; Immunology; Microbiology; Biology; Antibiotics; Internal medicine","score_opus":0.005118111729559833,"score_gpt":0.2394336832877224,"score_spread":0.23431557155816257,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2794504687","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98856497,0.0012308771,0.000010067581,0.007344329,0.00076170557,0.0017190505,0.000074886375,0.00007583984,0.00021829827],"genre_scores_gemma":[0.9946568,0.0018937995,0.000022067577,0.0024587293,0.00076817523,0.000060888757,0.00004057775,0.00005326823,0.000045664125],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99727345,0.00019045518,0.0007534596,0.0005652626,0.0004047999,0.00081257045],"domain_scores_gemma":[0.9974211,0.00043586153,0.0003098224,0.00043193187,0.00011169792,0.0012895789],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003657108,0.00037288058,0.00074059144,0.00045754458,0.00022266469,0.000016612525,0.00012759415,0.0002062972,0.00002267103],"category_scores_gemma":[0.00043225457,0.00031773085,0.000186013,0.0005426098,0.00010761028,0.00008132698,0.00007024613,0.0012458895,0.00002685415],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032987475,0.0014924379,0.98134875,0.001436772,0.000044208264,0.00017271329,0.001593657,0.000053066215,0.010276353,0.00010337613,0.00011016005,0.0030386199],"study_design_scores_gemma":[0.0038895642,0.0009967614,0.99227196,0.00023299495,0.00010891359,0.000050540464,0.00008835057,0.000050789684,0.00060824805,0.000088839115,0.0013551548,0.0002579007],"about_ca_topic_score_codex":0.00038210663,"about_ca_topic_score_gemma":0.0054367087,"teacher_disagreement_score":0.010923181,"about_ca_system_score_codex":0.00021320762,"about_ca_system_score_gemma":0.0017945342,"threshold_uncertainty_score":0.99992746},"labels":[],"label_agreement":null},{"id":"W2794652536","doi":"10.1093/pch/16.7.421","title":"La pneumonie chez les enfants et adolescents canadiens en santé : des points de pratique pour la prise en charge","year":2011,"lang":"fr","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Humanities; Gynecology; Philosophy","score_opus":0.017271100640954877,"score_gpt":0.2960374413708447,"score_spread":0.2787663407298898,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2794652536","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.938351,0.016695092,0.0008881105,0.016393686,0.0018106863,0.0015564219,0.00051325135,0.00025516964,0.023536636],"genre_scores_gemma":[0.9561658,0.034317415,0.0006415592,0.005814337,0.0021029646,0.00005621141,0.000029108827,0.00013054478,0.00074203964],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9924284,0.0039608967,0.000852373,0.0006436857,0.00040069467,0.0017139219],"domain_scores_gemma":[0.99647427,0.0007000037,0.00045154282,0.00051347614,0.00016585227,0.00169485],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0047494005,0.000557797,0.0007319456,0.00048466545,0.0006487711,0.000051953455,0.000322075,0.0008176285,0.000267533],"category_scores_gemma":[0.0012926928,0.000547319,0.0002564502,0.00062320166,0.0002717622,0.00020017738,0.00013767047,0.0023048045,0.00029775387],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000045559056,0.0016241901,0.9055547,0.0020668495,0.00012782503,0.0003669602,0.056848004,0.0000035085443,0.00024855885,0.002621083,0.0019413274,0.028551446],"study_design_scores_gemma":[0.0016877421,0.00043041314,0.9328205,0.0015624429,0.00023570642,0.00081259926,0.00091014657,0.000097097094,0.00012748272,0.00028942394,0.06055446,0.00047198692],"about_ca_topic_score_codex":0.016257651,"about_ca_topic_score_gemma":0.008760195,"teacher_disagreement_score":0.058613133,"about_ca_system_score_codex":0.0016257658,"about_ca_system_score_gemma":0.00552112,"threshold_uncertainty_score":0.9999969},"labels":[],"label_agreement":null},{"id":"W2795243898","doi":"10.1093/cid/cix801","title":"Corticosteroids in Patients Hospitalized With Community-Acquired Pneumonia: Systematic Review and Individual Patient Data Metaanalysis","year":2017,"lang":"en","type":"review","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":151,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; McMaster University","funders":"","keywords":"Medicine; Pneumonia; Intensive care medicine; MEDLINE; Meta-analysis; Systematic review; Internal medicine","score_opus":0.1982466632679334,"score_gpt":0.4441048578719855,"score_spread":0.24585819460405212,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2795243898","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0037992783,0.9888869,0.0000018579395,0.00004723182,0.00023333737,0.0057537174,0.0010495133,0.00012122554,0.00010696998],"genre_scores_gemma":[0.0055782194,0.98999166,0.00000199057,0.0008940221,0.000057962396,0.00074532407,0.0026067244,0.00009043811,0.000033654644],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.99220854,0.0030909355,0.0029320403,0.00084523764,0.0005177588,0.00040547928],"domain_scores_gemma":[0.9917149,0.0010058506,0.0022749489,0.0041230647,0.00026567152,0.0006155652],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009672818,0.0007608271,0.008319903,0.00038253827,0.00047964993,0.0001812654,0.0007418588,0.00040811172,0.00002333103],"category_scores_gemma":[0.0052512595,0.00048000258,0.0008546094,0.00048591525,0.0005833917,0.00028570308,0.00093118014,0.0010849376,0.00004129857],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010110014,0.0035038507,0.1610055,0.77285665,0.0056571607,0.00009920259,0.000017978551,5.6082214e-8,5.325375e-9,0.0000013440173,0.00013174965,0.056716427],"study_design_scores_gemma":[0.002503411,0.003123663,0.11905161,0.61468023,0.2118175,0.00008840476,0.000010979903,0.000002358925,3.9286525e-9,0.000007830758,0.04789017,0.0008238042],"about_ca_topic_score_codex":0.00003691264,"about_ca_topic_score_gemma":0.0000471617,"teacher_disagreement_score":0.20616035,"about_ca_system_score_codex":0.00013389347,"about_ca_system_score_gemma":0.0004916473,"threshold_uncertainty_score":0.99976516},"labels":[],"label_agreement":null},{"id":"W2796460462","doi":"10.1093/cid/cix999","title":"Factors Associated With 30-Day Mortality Rate in Respiratory Infections Caused by Streptococcus pneumoniae","year":2017,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; University Health Network; McGill University","funders":"","keywords":"Medicine; Streptococcus pneumoniae; Confidence interval; Hazard ratio; Internal medicine; Antibiotics; Mortality rate; Antibiotic therapy; Empiric therapy; Microbiology; Pathology","score_opus":0.11345083172723641,"score_gpt":0.4043526727141245,"score_spread":0.2909018409868881,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2796460462","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949743,0.00008247273,0.000029839051,0.00026015803,0.00074251025,0.0009634381,0.00028499344,0.000469182,0.002193115],"genre_scores_gemma":[0.9981491,0.00004727442,1.1843242e-8,0.00097208633,0.00024312017,0.00021646377,0.000084878295,0.000065935514,0.00022113722],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9966066,0.00071196316,0.000985896,0.00077690225,0.00032978514,0.00058886554],"domain_scores_gemma":[0.99590576,0.0010824439,0.0006818257,0.001275662,0.0002782333,0.00077607506],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008162172,0.00046132758,0.0009765999,0.00021408594,0.0009934071,0.00019651947,0.00022421214,0.00041660806,0.00026162906],"category_scores_gemma":[0.0065787584,0.00035301785,0.00045573316,0.00031113406,0.00093982543,0.00037419813,0.000113194146,0.0009302484,0.00006477122],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000020934501,0.0030400588,0.9940611,0.000029943398,0.00047218628,0.000088396126,0.00002611785,0.000029366734,0.00063985,0.000021601261,0.001125143,0.00046412437],"study_design_scores_gemma":[0.0034089875,0.0013191752,0.9902161,0.00019997646,0.0005746707,9.130803e-8,0.000029904719,0.000044043405,0.00010108347,0.00010307665,0.0035862448,0.00041664162],"about_ca_topic_score_codex":0.00004185221,"about_ca_topic_score_gemma":0.0015803132,"teacher_disagreement_score":0.005762541,"about_ca_system_score_codex":0.0002798088,"about_ca_system_score_gemma":0.0005951416,"threshold_uncertainty_score":0.9998922},"labels":[{"model":"gemma","categories":[],"domain":null,"study_design":"observational","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"low"},{"model":"gpt","categories":[],"domain":null,"study_design":"observational","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"high"}],"label_agreement":"agree"},{"id":"W2796622087","doi":"10.1099/mgen.0.000175","title":"Use of genomics to design a diagnostic assay to discriminate between Streptococcus pneumoniae and Streptococcus pseudopneumoniae","year":2018,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of British Columbia; BC Centre for Disease Control; University of Alberta Hospital; Alberta Hospital Edmonton; University of Alberta","funders":"","keywords":"Biology; Streptococcus pneumoniae; Genome; Clade; Comparative genomics; Phylogenetic tree; Genetics; Genomics; Microbiology; Gene; Bacteria","score_opus":0.05584724043814365,"score_gpt":0.28933677495691207,"score_spread":0.23348953451876842,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2796622087","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9870167,0.000023497007,0.007899418,0.0013701346,0.0003454544,0.002751495,0.00041229685,0.00009297962,0.000088029316],"genre_scores_gemma":[0.993384,0.000047006477,0.0039672167,0.0013246242,0.0006643269,0.00011660863,0.000029146859,0.000111186375,0.00035588074],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974701,0.00016006597,0.0007645487,0.00074185594,0.00017965867,0.0006837999],"domain_scores_gemma":[0.9974799,0.00053947297,0.00019959819,0.00074561517,0.0003073487,0.0007280713],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00040442255,0.0004512355,0.0007651188,0.00044709112,0.00026920348,0.00011083981,0.00024142736,0.0002420421,0.000040384344],"category_scores_gemma":[0.000653338,0.0004333165,0.00016841311,0.00045535588,0.00028313257,0.00012643368,0.00034303922,0.00029648165,0.00023325425],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008140117,0.00015661061,0.06560125,0.000064288964,0.00015028316,0.000029910301,0.0014692167,0.00022087335,0.9213703,0.000022312926,0.0013206847,0.009512866],"study_design_scores_gemma":[0.0018968881,0.0048079095,0.39473,0.00038068616,0.0009994165,0.00012001036,0.00027903926,0.00016144014,0.44018695,0.000099113546,0.15507603,0.0012625068],"about_ca_topic_score_codex":0.000099512865,"about_ca_topic_score_gemma":0.0001211994,"teacher_disagreement_score":0.48118335,"about_ca_system_score_codex":0.00033063357,"about_ca_system_score_gemma":0.00034456595,"threshold_uncertainty_score":0.9998119},"labels":[],"label_agreement":null},{"id":"W2799063918","doi":"10.1101/308767","title":"Discovery of a <i>Streptococcus pneumoniae</i> serotype 33F capsular polysaccharide locus that lacks <i>wcjE</i> and contains a <i>wcyO</i> pseudogene","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Health and Medical Research Council; State Government of Victoria; Bill and Melinda Gates Foundation; Pfizer; Veski; GAVI Alliance; Department of Foreign Affairs and Trade, Australian Government; Australian Government","keywords":"Locus (genetics); Pseudogene; Multilocus sequence typing; Biology; Genetics; Streptococcus pneumoniae; Microbiology; Serotype; Gene; Genome; Genotype; Bacteria","score_opus":0.016093993522854816,"score_gpt":0.235624405484592,"score_spread":0.21953041196173717,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2799063918","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99161786,0.002133263,0.00057434733,0.0007798967,0.0013493072,0.0021579221,0.00088595325,0.0004431764,0.000058258564],"genre_scores_gemma":[0.9957171,0.0011083041,0.0002555797,0.0013909175,0.00083381694,0.00039041686,0.000001464604,0.00026293908,0.000039436298],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99522984,0.00021742408,0.0011105594,0.0016600332,0.0007851307,0.000997011],"domain_scores_gemma":[0.9950742,0.00011448785,0.000973143,0.0023398467,0.0008425528,0.0006557399],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006518568,0.0011374819,0.0017722346,0.00052326656,0.00029824433,0.00023641912,0.00051361683,0.0011185955,0.000036920082],"category_scores_gemma":[0.00023843425,0.0010788715,0.00050684233,0.0006964679,0.00076767337,0.0003524797,0.00083951786,0.0015157674,0.00005598538],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009648995,0.00037960603,0.14593409,0.0009952921,0.0005999049,0.00023581422,0.000024598843,0.000006947705,0.8511749,0.00014932264,0.0004007652,0.0000023052266],"study_design_scores_gemma":[0.002413222,0.0006527284,0.09273861,0.001922232,0.0013585928,0.0000020333582,0.000017030121,0.000076102326,0.8919385,0.000008263205,0.007485063,0.0013876136],"about_ca_topic_score_codex":0.00022704618,"about_ca_topic_score_gemma":0.000022451082,"teacher_disagreement_score":0.053195473,"about_ca_system_score_codex":0.0003155552,"about_ca_system_score_gemma":0.0016963459,"threshold_uncertainty_score":0.99916613},"labels":[],"label_agreement":null},{"id":"W2799875219","doi":"10.1016/j.vaccine.2018.04.032","title":"Invasive pneumococcal disease in Northern Alberta, not a Red Queen but a dark horse","year":2018,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta; Provincial Laboratory of Public Health; Dalhousie University; Health Sciences Centre","funders":"Merck Canada; Canada Research Chairs; Eli Lilly and Company","keywords":"Medicine; Streptococcus pneumoniae; Incidence (geometry); Pediatrics; Empyema; Population; Vaccination; Pneumococcal infections; Pneumococcal disease; Mortality rate; Serotype; Pneumococcal conjugate vaccine; Internal medicine; Immunology; Surgery; Biology; Antibiotics","score_opus":0.012160888001404522,"score_gpt":0.25949034041475594,"score_spread":0.2473294524133514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2799875219","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9857113,0.000019745252,0.000008684099,0.011258769,0.00021350986,0.00047736865,0.000012656737,0.00006569564,0.0022323218],"genre_scores_gemma":[0.9951282,0.00001978259,0.000012516201,0.0017045364,0.0005685953,0.00007154008,0.000022884062,0.00003332523,0.0024386107],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988119,0.00006031472,0.0003086636,0.0003363613,0.00016037685,0.00032240097],"domain_scores_gemma":[0.99885625,0.00010003354,0.00006951362,0.00046078622,0.00013887291,0.00037451807],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009467297,0.00018977653,0.00030409312,0.00022760469,0.000101136,0.00001380038,0.000097193246,0.00009305897,0.00022916052],"category_scores_gemma":[0.00052073784,0.00015077821,0.00010671777,0.0003804224,0.000029494597,0.00008436349,0.00005839267,0.0002262786,0.0005434021],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004886672,0.00032921546,0.8990778,0.00004597446,0.000046931105,0.00024766795,0.00028325067,0.0000051151014,0.09820699,0.000025705103,0.0008241763,0.00041850415],"study_design_scores_gemma":[0.002615369,0.00050488964,0.97629666,0.00015102584,0.0001015727,0.000037131056,0.00005221201,0.000063580395,0.0028243382,0.00008517541,0.017074702,0.00019336349],"about_ca_topic_score_codex":0.0013317995,"about_ca_topic_score_gemma":0.018511314,"teacher_disagreement_score":0.09538265,"about_ca_system_score_codex":0.00010000734,"about_ca_system_score_gemma":0.00029099264,"threshold_uncertainty_score":0.9993983},"labels":[],"label_agreement":null},{"id":"W2801760896","doi":"10.1016/j.carres.2018.04.011","title":"Discovery and description of a new serogroup 7 Streptococcus pneumoniae serotype, 7D, and structural analysis of 7C and 7D","year":2018,"lang":"en","type":"article","venue":"Carbohydrate Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Cytodiagnostics (Canada)","funders":"Novo Nordisk Fonden; Danmarks Tekniske Universitet; Villum Fonden","keywords":"Serotype; Streptococcus pneumoniae; Chemistry; Polysaccharide; Antiserum; Microbiology; Gene; Nuclear magnetic resonance spectroscopy; Strain (injury); Antigen; Biology; Biochemistry; Stereochemistry; Genetics; Antibiotics","score_opus":0.07294076922443288,"score_gpt":0.375958048822882,"score_spread":0.3030172795984491,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2801760896","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985378,0.00048397394,0.000024177014,0.00023330457,0.00004640651,0.00036718388,0.00002691091,0.000013542097,0.0002667318],"genre_scores_gemma":[0.9991319,0.00027437054,0.000023219727,0.000020666328,0.00009748575,0.000011393169,0.000011044454,0.000013073867,0.00041680544],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99866897,0.00013269998,0.00028121262,0.0003089585,0.00033218582,0.00027595105],"domain_scores_gemma":[0.99898493,0.000095247226,0.00007770394,0.000284974,0.0003325469,0.00022459087],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039286228,0.00012624725,0.0004209918,0.0007438993,0.00014163324,0.000054682798,0.000054758635,0.00011381574,0.000018570005],"category_scores_gemma":[0.00011592179,0.0000987671,0.000064062675,0.0013199771,0.000742698,0.00020882208,0.00012165017,0.00023808709,9.818593e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051468396,0.000019307334,0.42379943,0.000096371245,0.00033728074,0.0000058408136,0.00047592193,0.0000025948987,0.57279295,0.0000941574,0.000018702487,0.0023059722],"study_design_scores_gemma":[0.0008215317,0.0010484558,0.97594064,0.000110749585,0.0006220709,0.000014708088,0.00055685884,0.0028255633,0.017429076,0.00033535674,0.00017396863,0.00012102164],"about_ca_topic_score_codex":0.00044559131,"about_ca_topic_score_gemma":0.00046467595,"teacher_disagreement_score":0.5553639,"about_ca_system_score_codex":0.000035271012,"about_ca_system_score_gemma":0.00014796639,"threshold_uncertainty_score":0.40276054},"labels":[],"label_agreement":null},{"id":"W2804558326","doi":"10.1136/bmjopen-2018-021512","title":"Determining the pneumococcal conjugate vaccine coverage required for indirect protection against vaccine-type pneumococcal carriage in low and middle-income countries: a protocol for a prospective observational study","year":2018,"lang":"en","type":"article","venue":"BMJ Open","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity; Princess Margaret Cancer Centre","funders":"University of Melbourne; World Health Organization; State Government of Victoria; Australian Government; Bill and Melinda Gates Foundation","keywords":"Medicine; Carriage; Vaccination; Pneumococcal conjugate vaccine; Conjugate vaccine; Transmission (telecommunications); Pneumococcal infections; Observational study; Environmental health; Pediatrics; Streptococcus pneumoniae; Immunology; Immunization; Internal medicine","score_opus":0.15558862128437023,"score_gpt":0.4257819940477298,"score_spread":0.2701933727633596,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2804558326","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5941155,6.750748e-7,0.00008569065,0.00062778324,0.0001368549,0.40477642,0.00003608079,0.000043531636,0.00017746362],"genre_scores_gemma":[0.5378132,3.1312578e-7,0.00005620861,0.00036777408,0.00035429694,0.46118394,0.000013344876,0.000037155874,0.00017378236],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9976857,0.00019540163,0.0007873414,0.0006245855,0.00027451752,0.00043251063],"domain_scores_gemma":[0.99796236,0.00033926257,0.0003730692,0.0004457275,0.00074937684,0.00013018576],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016208601,0.00033020804,0.0006543613,0.00017789338,0.0006781594,0.00022383919,0.00026332308,0.00016146986,0.000021360785],"category_scores_gemma":[0.0011741206,0.00023082728,0.000091513386,0.0004690872,0.00007207694,0.00043465983,0.00021900186,0.00026019587,0.0000083105115],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.011100405,0.00090719474,0.9715219,0.0012103606,0.00024546176,0.000024730141,0.0024730007,0.000019708832,0.011939972,0.00006967707,0.00007591278,0.00041165424],"study_design_scores_gemma":[0.025283799,0.008742608,0.95483404,0.0014951251,0.00009761003,0.00004652708,0.00032799225,0.00201208,0.0018769694,0.00023002955,0.004684931,0.0003682602],"about_ca_topic_score_codex":0.000039169874,"about_ca_topic_score_gemma":0.0009760469,"teacher_disagreement_score":0.056407526,"about_ca_system_score_codex":0.00026223407,"about_ca_system_score_gemma":0.00064485427,"threshold_uncertainty_score":0.9412864},"labels":[],"label_agreement":null},{"id":"W2805137734","doi":"10.1097/inf.0000000000001845","title":"Characteristics of Children With Invasive Pneumococcal Disease After the Introduction of the 13-valent Pneumococcal Conjugate Vaccine in England and Wales, 2010–2016","year":2018,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Pediatrics; Meningitis; Case fatality rate; Comorbidity; Serotype; Pneumococcal disease; Confidence interval; Public health; Conjugate vaccine; Epidemiology; Streptococcus pneumoniae; Internal medicine; Immunology; Antibiotics; Immunization","score_opus":0.004355058773669137,"score_gpt":0.2094177352082205,"score_spread":0.20506267643455137,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2805137734","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943938,0.00039541742,0.000016599599,0.0037010522,0.0005989003,0.00078091724,0.00007578263,0.000016603468,0.000020907795],"genre_scores_gemma":[0.993865,0.0014786095,0.0000012959175,0.00021492387,0.004309201,0.000042137017,0.0000049619985,0.000026288484,0.0000575578],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982273,0.00033025866,0.000560218,0.00022618075,0.00035851702,0.00029755372],"domain_scores_gemma":[0.99819535,0.00015990427,0.00049408665,0.00047770658,0.0003511211,0.00032183863],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047792698,0.00024173742,0.00033945806,0.00020274396,0.00037845253,0.000036075642,0.00016392932,0.00006447852,0.00007333428],"category_scores_gemma":[0.00045332618,0.00010594137,0.00016427407,0.00044269016,0.00043188332,0.00011803577,0.000107215834,0.0006356564,0.0000072580665],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012205801,0.0003812649,0.99621695,0.00008644151,0.00012004481,0.000020756535,0.00041037836,0.000021445489,0.0010497083,0.0000075604157,0.00016915635,0.0002957263],"study_design_scores_gemma":[0.0021773612,0.00049241056,0.994333,0.00007166122,0.0013285086,0.00092741573,0.000022586164,0.00002426195,0.0000711531,0.00014766383,0.00027252096,0.00013145612],"about_ca_topic_score_codex":0.000037040667,"about_ca_topic_score_gemma":0.0001066597,"teacher_disagreement_score":0.0037103011,"about_ca_system_score_codex":0.000073943505,"about_ca_system_score_gemma":0.0005936927,"threshold_uncertainty_score":0.43201634},"labels":[],"label_agreement":null},{"id":"W2806209540","doi":"10.2217/ebo.11.104","title":"Community-acquired pneumonia: a common illness that continues to evolve","year":2011,"lang":"en","type":"other","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Community-acquired pneumonia; Pneumonia; Intensive care medicine; Medicine; Internal medicine","score_opus":0.04545214816254492,"score_gpt":0.3000287536085013,"score_spread":0.2545766054459564,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2806209540","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0047074137,0.00020791622,0.00010919936,0.00078987796,0.00086344255,0.0010410285,0.000066289525,0.0009435899,0.99127126],"genre_scores_gemma":[0.054213353,0.00007959094,0.00011345705,0.0042544375,0.0003385934,0.000089752844,0.00007115675,0.0005557712,0.9402839],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99861795,0.00022061168,0.00026068639,0.00027826676,0.00024560723,0.0003768836],"domain_scores_gemma":[0.9982138,0.00005659706,0.00015112708,0.0011546348,0.00006675888,0.0003570601],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00017796108,0.0004325669,0.0008921084,0.0005008683,0.00023065227,0.000029247401,0.00028540046,0.00053585094,0.0075130146],"category_scores_gemma":[0.00003979062,0.00033398005,0.00022957777,0.00023235581,0.00016828688,0.000034009798,0.00017910152,0.00056325324,0.0019553958],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043109703,0.000568525,0.009128794,0.00028298408,0.0004247722,0.00008701125,0.0011526115,1.0111839e-7,0.003907741,0.0002832069,0.98069555,0.0034256198],"study_design_scores_gemma":[0.0006475698,0.0004096589,0.007994327,0.00069153146,0.00023910034,0.00010257294,0.0005103808,0.0000010440258,0.00059518614,0.000033698838,0.9883359,0.00043904842],"about_ca_topic_score_codex":0.0028814077,"about_ca_topic_score_gemma":0.0035626674,"teacher_disagreement_score":0.050987355,"about_ca_system_score_codex":0.00006985418,"about_ca_system_score_gemma":0.00008204054,"threshold_uncertainty_score":0.99991125},"labels":[],"label_agreement":null},{"id":"W2806380559","doi":"10.1016/j.diagmicrobio.2018.05.007","title":"Nasal colonization with Streptococcus pneumoniae and Staphylococcus aureus among hospitalized patients with laboratory-confirmed influenza","year":2018,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; Sunnybrook Health Science Centre; Health Sciences Centre; University of Toronto; London Health Sciences Centre","funders":"","keywords":"Streptococcus pneumoniae; Staphylococcus aureus; Microbiology; Colonization; Medicine; Polymerase chain reaction; Micrococcaceae; Biology; Bacteria; Antibiotics; Gene","score_opus":0.0031720994547101058,"score_gpt":0.21589047145166035,"score_spread":0.21271837199695023,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2806380559","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99764365,0.00015776347,0.000056878926,0.000121924626,0.00015111838,0.0013551896,0.00023957466,0.00014991045,0.0001239876],"genre_scores_gemma":[0.99784845,0.00004481932,0.00000712847,0.0015986429,0.000110872694,0.00019243459,0.00014563366,0.000035082594,0.000016917025],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987208,0.000112967355,0.00024610967,0.0004910919,0.000074431344,0.00035458378],"domain_scores_gemma":[0.9984318,0.00021706738,0.00015717058,0.00026653075,0.00050019706,0.00042724365],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007268523,0.00031214708,0.0003521536,0.00017493188,0.00040911886,0.00004626784,0.00004515277,0.00018003763,0.0000714186],"category_scores_gemma":[0.0004772638,0.00022239628,0.000033420896,0.00030659096,0.0012410524,0.00015549533,0.00004390449,0.00020704397,0.000015693258],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029954038,0.00046403645,0.9944078,0.00007416013,0.00019583998,0.00005450513,0.00016951989,0.0000044631006,0.003914714,0.000053813517,0.00023331272,0.00012829363],"study_design_scores_gemma":[0.0054223905,0.003283075,0.98614496,0.00015301828,0.00040125567,0.000010783832,0.000024127798,0.000008985422,0.000388873,0.000019790701,0.003832318,0.00031043577],"about_ca_topic_score_codex":0.00002538188,"about_ca_topic_score_gemma":0.00014267518,"teacher_disagreement_score":0.008262855,"about_ca_system_score_codex":0.000047614183,"about_ca_system_score_gemma":0.00022777425,"threshold_uncertainty_score":0.9069057},"labels":[],"label_agreement":null},{"id":"W2806437634","doi":"10.14740/jocmr3421w","title":"<i>Mycoplasma pneumoniae</i>: A Potentially Severe Infection","year":2018,"lang":"en","type":"review","venue":"Journal of Clinical Medicine Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":154,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Mycoplasma pneumoniae; Medicine; Pneumonia; Mycoplasma; Mycoplasma pneumonia; Etiology; Community-acquired pneumonia; Mycoplasmataceae; Intensive care medicine; Immunology; Microbiology; Pathology; Mollicutes; Internal medicine; Biology","score_opus":0.44990354395772997,"score_gpt":0.6135691123824828,"score_spread":0.16366556842475283,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2806437634","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00046396462,0.9791939,0.00006946088,0.0034290014,0.0055481796,0.001110958,0.000008660654,0.000042964595,0.010132898],"genre_scores_gemma":[0.00009418946,0.9760199,0.0000802039,0.00031896727,0.02067982,0.000022907167,0.000011482919,0.00010451569,0.0026679873],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9869754,0.003127971,0.00563745,0.00057993346,0.002893339,0.00078590814],"domain_scores_gemma":[0.98614144,0.005158363,0.0024358619,0.0008667642,0.0039621177,0.0014354289],"candidate_categories":["metaresearch","metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.019604111,0.0005229702,0.005716469,0.0020660195,0.00030751317,0.000046130648,0.00052082195,0.0014138976,0.0006732476],"category_scores_gemma":[0.020155448,0.00029896578,0.0024486135,0.001904014,0.0015188672,0.0001680522,0.00022187765,0.008163919,0.0006508561],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015975368,0.00069899525,0.0018417466,0.011205089,0.0012954875,0.0012210332,0.00003160029,1.970087e-7,0.000009012454,0.000026718506,0.0730167,0.9104937],"study_design_scores_gemma":[0.0019812013,0.00954189,0.00019168945,0.053258836,0.0024345315,0.02648103,0.000016688708,0.0000023514901,4.8653834e-7,0.00010112898,0.9057786,0.00021156395],"about_ca_topic_score_codex":0.000025053958,"about_ca_topic_score_gemma":0.000014124643,"teacher_disagreement_score":0.9102821,"about_ca_system_score_codex":0.00029012305,"about_ca_system_score_gemma":0.005456468,"threshold_uncertainty_score":0.99994624},"labels":[],"label_agreement":null},{"id":"W2806678651","doi":"10.1016/j.rmed.2018.05.020","title":"Macrolide therapy is associated with lower mortality in community-acquired bacteraemic pneumonia","year":2018,"lang":"en","type":"article","venue":"Respiratory Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Alexandra Hospital; Hôpital Maisonneuve-Rosemont; University of Alberta Hospital; Sturgeon Community Hospital; Grey Nuns Community Hospital","funders":"University of Louisville","keywords":"Medicine; Bacteremia; Pneumonia; Community-acquired pneumonia; Internal medicine; Streptococcus pneumoniae; Confidence interval; Poisson regression; Relative risk; Blood culture; Regimen; Surgery; Antibiotics; Population","score_opus":0.06192724505376098,"score_gpt":0.3425313277324198,"score_spread":0.28060408267865883,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2806678651","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9883397,0.0002458238,0.000015622574,0.0014157828,0.00038891897,0.0006114869,0.00001925254,0.00020203629,0.008761332],"genre_scores_gemma":[0.9768357,0.00007129999,0.0000048324364,0.021884607,0.000629353,0.00005871674,0.000028319735,0.00006747473,0.00041965413],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99714726,0.00060263206,0.0006803861,0.0004004053,0.0005866979,0.0005826055],"domain_scores_gemma":[0.99779814,0.00019880784,0.00023977378,0.001030943,0.0003819494,0.00035035453],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0013176587,0.00039898537,0.0008262506,0.0004161622,0.00037032034,0.000016495058,0.00023430403,0.00027609227,0.0013998338],"category_scores_gemma":[0.00035972398,0.00027490602,0.000101988786,0.0010496901,0.0010905336,0.00014899918,0.00005047459,0.00077179994,0.000095497606],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046758878,0.0008372078,0.73102576,0.00004795522,0.00031161073,0.0003729062,0.0020457427,0.0000010140964,0.26121712,0.000019386714,0.0020603638,0.0015933583],"study_design_scores_gemma":[0.0069056135,0.005646592,0.88000053,0.00087465445,0.000112608155,0.00007961682,0.00022057988,0.000031074378,0.0037019677,0.000047670615,0.102063335,0.00031576696],"about_ca_topic_score_codex":0.00023733648,"about_ca_topic_score_gemma":0.0018618059,"teacher_disagreement_score":0.25751516,"about_ca_system_score_codex":0.00021604264,"about_ca_system_score_gemma":0.00029185083,"threshold_uncertainty_score":0.9999703},"labels":[],"label_agreement":null},{"id":"W2809111371","doi":"10.1007/s40121-018-0206-1","title":"Clinical and Economic Impact of a Potential Switch from 13-Valent to 10-Valent Pneumococcal Conjugate Infant Vaccination in Canada","year":2018,"lang":"en","type":"article","venue":"Infectious Diseases and Therapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Pfizer (Canada); University of Calgary","funders":"Pfizer","keywords":"Medicine; Vaccination; Pneumococcal conjugate vaccine; Context (archaeology); Immunization; Pneumococcal disease; Immunization program; Pediatrics; Environmental health; Health care; Immunology; Economic growth; Streptococcus pneumoniae; Antibiotics","score_opus":0.011090607116145965,"score_gpt":0.30931282312769554,"score_spread":0.2982222160115496,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2809111371","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99834365,0.00035815642,0.00001288112,0.00021209869,0.00034009767,0.00043719666,0.00013830914,0.000020489786,0.00013714923],"genre_scores_gemma":[0.99816304,0.0011014291,0.0000016050678,0.00036787786,0.000306757,0.00002547804,0.0000099684785,0.000014376442,0.0000094795805],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99899846,0.00007099547,0.0003856886,0.00027083806,0.000093011186,0.00018101589],"domain_scores_gemma":[0.9992867,0.00006815847,0.00009636178,0.0001682019,0.00007054477,0.00031000053],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008524775,0.00015294288,0.0003563184,0.00011382371,0.00007199559,0.000019257897,0.000033400018,0.00006197983,0.00029780768],"category_scores_gemma":[0.000026924532,0.00011900844,0.000116161595,0.000076779776,0.00006492622,0.00005976461,0.000027922739,0.00009755548,0.0000073808656],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041345882,0.00017923886,0.9805838,0.00001119826,0.00017526082,0.000014783418,0.00005681289,0.00008755528,0.0030402984,0.0000059301333,0.00018713286,0.015244536],"study_design_scores_gemma":[0.0032137642,0.0016554833,0.9930332,0.00003605857,0.000059955033,0.000023127493,0.000019091949,0.00063884276,0.00014424698,0.00014495326,0.00090350345,0.00012777653],"about_ca_topic_score_codex":0.4596182,"about_ca_topic_score_gemma":0.31339765,"teacher_disagreement_score":0.14622055,"about_ca_system_score_codex":0.00025119007,"about_ca_system_score_gemma":0.0008966418,"threshold_uncertainty_score":0.6991311},"labels":[],"label_agreement":null},{"id":"W2809146642","doi":"10.1016/j.vaccine.2018.06.018","title":"Serotype distribution of invasive Streptococcus pneumoniae in adults 65 years of age and over after the introduction of childhood 13-valent pneumococcal conjugate vaccination programs in Canada, 2010–2016","year":2018,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Yukon Health and Social Services; Queen Elizabeth II Health Sciences Centre; Government of New Brunswick; BC Centre for Disease Control; Public Health Ontario; Government of Northwest Territories; Provincial Laboratory of Public Health; Ste. Anne's Hospital; Saskatchewan Disease Control Laboratory; University of Manitoba; Mount Sinai Hospital; Public Health Agency of Canada","funders":"University of Manitoba; Wyeth; Pfizer","keywords":"Streptococcus pneumoniae; Medicine; Pneumococcal conjugate vaccine; Serotype; Vaccination; Pneumococcal polysaccharide vaccine; Pneumococcal infections; Conjugate vaccine; Penicillin; Incidence (geometry); Epidemiology; Ceftriaxone; Trimethoprim; Microbiology; Internal medicine; Virology; Antibiotics; Pneumococcal disease; Biology","score_opus":0.006916527064869756,"score_gpt":0.21979130547412795,"score_spread":0.2128747784092582,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2809146642","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99789864,0.00008862833,0.0000030585932,0.00077326846,0.00018059874,0.0009808766,0.00005161329,0.0000069934567,0.000016342516],"genre_scores_gemma":[0.99956536,0.00010356787,0.000002587226,0.000029645806,0.00013941422,0.000065259905,0.00006311966,0.00001102851,0.000019993933],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988326,0.0000747895,0.00051119324,0.00021883978,0.00018675296,0.00017586433],"domain_scores_gemma":[0.99922925,0.000043659318,0.00023909405,0.00025918378,0.00017399451,0.000054814445],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018724223,0.00012472444,0.00031851328,0.00013521878,0.000020914229,0.0000034802383,0.000059947743,0.000078140416,0.000046753503],"category_scores_gemma":[0.00012630664,0.000093855626,0.00004256406,0.0004083364,0.00003779544,0.00008369854,0.000043787917,0.00018906563,0.0000012580449],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034822093,0.00032797307,0.9577739,0.00017251582,0.000038710692,0.000014991579,0.00060106145,0.000012785604,0.032512497,0.000016657774,0.00014662782,0.0080340365],"study_design_scores_gemma":[0.0021477533,0.0006916141,0.98926467,0.00032136883,0.000042392312,0.000012066415,0.000174212,0.000044000375,0.006941287,0.000028887276,0.00025264607,0.000079120044],"about_ca_topic_score_codex":0.08064294,"about_ca_topic_score_gemma":0.5378718,"teacher_disagreement_score":0.4572288,"about_ca_system_score_codex":0.00016390508,"about_ca_system_score_gemma":0.0003531278,"threshold_uncertainty_score":0.9254791},"labels":[],"label_agreement":null},{"id":"W2809835222","doi":"10.1093/jac/dky156","title":"Antimicrobial susceptibility testing of invasive isolates of Streptococcus pneumoniae from Canadian patients: the SAVE study, 2011–15","year":2018,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; University of Manitoba; Shared Health","funders":"Merck Canada; Pfizer Canada; Public Health Agency; Diagnostic Services Manitoba; Pfizer; Public Health Agency of Canada; University of Manitoba; National Metallurgical Laboratory, Council for Scientific and Industrial Research","keywords":"Clindamycin; Broth microdilution; Streptococcus pneumoniae; Microbiology; Penicillin; Medicine; Antimicrobial; Ceftriaxone; Trimethoprim; Clarithromycin; Antibiotics; Minimum inhibitory concentration; Biology","score_opus":0.0159582343945373,"score_gpt":0.2596762920950375,"score_spread":0.2437180577005002,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2809835222","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967311,0.000018011582,0.000016087153,0.001710941,0.0005135068,0.0006751792,0.00011774246,0.000010283216,0.00020713417],"genre_scores_gemma":[0.9974698,0.000040059047,0.00018932669,0.0017203166,0.0005203699,0.0000011216443,0.0000053058343,0.000034488767,0.000019244262],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9979865,0.00014347665,0.0010798965,0.00023189538,0.00023915539,0.00031907432],"domain_scores_gemma":[0.99634266,0.00023596022,0.0010821999,0.000419501,0.0017166265,0.00020307988],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042576887,0.00025095913,0.0007099528,0.00028647514,0.00019936012,0.000026190279,0.0003140707,0.00015183493,0.0002695631],"category_scores_gemma":[0.000292039,0.00016955775,0.00029708532,0.0003472008,0.00047539416,0.0001491887,0.000037679627,0.00041915022,0.0000120829145],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013309698,0.00072154263,0.48040396,0.000021910659,0.00024540536,0.000007701922,0.0010508172,0.000005466428,0.5145392,3.4314988e-7,0.002288866,0.0005817077],"study_design_scores_gemma":[0.0042267456,0.0033295094,0.5941749,0.0003534606,0.0002352941,0.000049499333,0.00046031285,0.000010839067,0.39545834,0.0000174765,0.0014919948,0.00019157572],"about_ca_topic_score_codex":0.010049569,"about_ca_topic_score_gemma":0.023831122,"teacher_disagreement_score":0.11908083,"about_ca_system_score_codex":0.00014436767,"about_ca_system_score_gemma":0.0010836347,"threshold_uncertainty_score":0.9965426},"labels":[],"label_agreement":null},{"id":"W2810077988","doi":"10.3138/jammi.2017-0007","title":"Recurrent meningitis caused by <i>Streptococcus pneumoniae</i> serotype 15C associated with Wiskott-Aldrich syndrome","year":2018,"lang":"en","type":"article","venue":"Journal of the Association of Medical Microbiology and Infectious Disease Canada","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Lakehead University; NOSM University","funders":"","keywords":"Meningitis; Wiskott–Aldrich syndrome; Streptococcus pneumoniae; Serotype; Virology; Medicine; Immunology; Microbiology; Pediatrics; Biology; Antibiotics; Genetics; Gene","score_opus":0.0039491199439140425,"score_gpt":0.21615259343530466,"score_spread":0.21220347349139063,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2810077988","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9881719,0.00023763033,0.000009066397,0.0102323545,0.0008817744,0.0001911186,0.00011560429,0.000011424053,0.0001491816],"genre_scores_gemma":[0.9976077,0.00008889306,5.9218803e-7,0.001896885,0.000121157034,0.000004914372,0.00001512162,0.00001169334,0.0002530273],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99839693,0.00028564048,0.00049128855,0.00014014416,0.0004414076,0.00024460745],"domain_scores_gemma":[0.99773365,0.00025564895,0.00091437245,0.00013071702,0.0005783676,0.00038726194],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00058489013,0.0001486904,0.00042570964,0.00006908297,0.00021508553,0.000010265596,0.00013652112,0.00021961039,0.000108760556],"category_scores_gemma":[0.0017098329,0.00009279913,0.00011111509,0.00027732592,0.00022462325,0.000053021624,0.00004307928,0.00052186026,0.0000010331333],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000062255785,0.0002854023,0.9229429,0.000035676956,0.0009382117,0.000085004685,0.000047088895,0.0000026896605,0.015023707,0.000015914275,0.0602995,0.00026166195],"study_design_scores_gemma":[0.0048663197,0.002401244,0.92315066,0.0008687647,0.0010733627,0.00078874803,0.00004880437,0.00002270949,0.0018813944,0.000053525553,0.064584695,0.00025975748],"about_ca_topic_score_codex":0.0016644588,"about_ca_topic_score_gemma":0.040929567,"teacher_disagreement_score":0.039265107,"about_ca_system_score_codex":0.00063773064,"about_ca_system_score_gemma":0.002216614,"threshold_uncertainty_score":0.97657096},"labels":[],"label_agreement":null},{"id":"W2810131685","doi":"10.1093/jac/dky158","title":"Analysis of multidrug resistance in the predominant Streptococcus pneumoniae serotypes in Canada: the SAVE study, 2011–15","year":2018,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; University of Manitoba; Shared Health","funders":"Public Health Agency of Canada; Pfizer Canada; Merck Canada; Diagnostic Services Manitoba; Pfizer","keywords":"Streptococcus pneumoniae; Serotype; Multiple drug resistance; Microbiology; Pneumococcal infections; Medicine; Virology; Biology; Drug resistance; Antibiotics","score_opus":0.010374016784191734,"score_gpt":0.2658363371663509,"score_spread":0.25546232038215916,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2810131685","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9919483,0.00006972208,0.000011752783,0.007189368,0.00014308088,0.00048065095,0.000012060181,0.0000022151419,0.00014283061],"genre_scores_gemma":[0.99804837,0.000121404846,0.000024640458,0.0015883773,0.00013831237,0.0000039398838,7.196087e-7,0.000012140106,0.00006212629],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983963,0.00020110479,0.0007376551,0.00014069627,0.00031642185,0.00020786254],"domain_scores_gemma":[0.9987535,0.00014033235,0.00048909825,0.00033358907,0.00023881007,0.00004468385],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00077160867,0.0001476252,0.00056592876,0.0003371718,0.0000810062,0.000015284348,0.0002902974,0.00005077056,0.00007902642],"category_scores_gemma":[0.000045863995,0.00007674974,0.00019738147,0.00084974244,0.00013709365,0.000060762733,0.000015014777,0.0003700162,0.0000015612914],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004709561,0.0008298197,0.84250623,0.000019524676,0.0008071905,0.000114592796,0.005099441,0.00015533675,0.14634232,0.0000027447577,0.0032573803,0.00039449186],"study_design_scores_gemma":[0.002490827,0.0003764505,0.97744715,0.00011107121,0.00037505434,0.000030117622,0.0016339257,0.00010245844,0.013308576,0.000004552553,0.004023938,0.000095893076],"about_ca_topic_score_codex":0.05054686,"about_ca_topic_score_gemma":0.86056745,"teacher_disagreement_score":0.8100206,"about_ca_system_score_codex":0.0002298631,"about_ca_system_score_gemma":0.00087273814,"threshold_uncertainty_score":0.9557756},"labels":[],"label_agreement":null},{"id":"W2810449130","doi":"10.1016/j.jinf.2018.06.004","title":"The relative invasive disease potential of Streptococcus pneumoniae among children after PCV introduction: A systematic review and meta-analysis","year":2018,"lang":"en","type":"review","venue":"Journal of Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":138,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Global Health Research","funders":"Sanofi Pasteur; Centers for Disease Control and Prevention; National Institute for Health and Care Research; Sanofi","keywords":"Carriage; Serotype; Medicine; Streptococcus pneumoniae; Disease; Pneumococcal disease; Odds ratio; Pneumococcal infections; Conjugate vaccine; Pneumococcal conjugate vaccine; Pediatrics; Immunology; Internal medicine; Immunization; Biology; Pathology; Microbiology; Immune system; Antibiotics","score_opus":0.023065661054989736,"score_gpt":0.3114482200718266,"score_spread":0.28838255901683685,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2810449130","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0005010458,0.99605805,0.0001308271,0.00045321265,0.00026382488,0.002528736,0.000036671514,0.000011389774,0.00001624059],"genre_scores_gemma":[0.002045663,0.99664354,0.0000048511824,0.00006817425,0.00067766634,0.0002645071,0.000013522737,0.000028617213,0.00025347326],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9959662,0.0009988148,0.0021205219,0.00028421934,0.00046143867,0.00016878729],"domain_scores_gemma":[0.99397284,0.00023826858,0.004041255,0.0005584246,0.0009541988,0.00023502157],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012692666,0.00040372988,0.004948473,0.0006627211,0.00020568578,0.000052951287,0.000098318196,0.00019279214,0.00012181292],"category_scores_gemma":[0.0012029025,0.00019481583,0.0050160056,0.001046459,0.0002729631,0.00027863673,0.000054084132,0.00071907404,0.000010617347],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025969239,0.00023491809,0.0027294725,0.5318086,0.46399605,0.000059088936,0.000043539058,0.000006824643,0.0000015176379,0.000018496426,0.00050934864,0.0005661251],"study_design_scores_gemma":[0.00012943104,0.00035104138,0.0051056193,0.02694257,0.95949095,0.0008520316,0.0000037276868,7.767166e-7,5.4921344e-7,0.000020649946,0.0069424273,0.00016019847],"about_ca_topic_score_codex":0.000008241259,"about_ca_topic_score_gemma":0.00002215846,"teacher_disagreement_score":0.50486606,"about_ca_system_score_codex":0.00015209765,"about_ca_system_score_gemma":0.00034481194,"threshold_uncertainty_score":0.7944359},"labels":[],"label_agreement":null},{"id":"W2811265246","doi":"10.3791/57672","title":"Murine Oropharyngeal Aspiration Model of Ventilator-associated and Hospital-acquired Bacterial Pneumonia","year":2018,"lang":"en","type":"article","venue":"Journal of Visualized Experiments","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Hamilton Health Sciences Foundation","keywords":"Pneumonia; Medicine; Pathogenesis; Bacterial pneumonia; Sinusitis; Lung; Aspiration pneumonia; Immunology; Internal medicine","score_opus":0.031193670520989196,"score_gpt":0.39317684389301305,"score_spread":0.36198317337202385,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2811265246","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984274,0.00015132852,0.00011522356,0.00013326698,0.0007740216,0.0002245754,0.000008026891,0.000017499577,0.00014864365],"genre_scores_gemma":[0.99890083,0.00005252037,0.0002863398,0.00018467105,0.00047280366,0.0000073424176,0.0000051460843,0.000024482599,0.000065840206],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99857724,0.0000640015,0.00068743405,0.00013617678,0.00035617716,0.00017895483],"domain_scores_gemma":[0.99859154,0.000014754783,0.00064600736,0.0001328593,0.00043149697,0.00018336113],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021340244,0.00015743099,0.0005019051,0.00018656779,0.000100924815,0.000021627353,0.000069287526,0.00012114724,0.00010459062],"category_scores_gemma":[0.00008610799,0.0001296684,0.00014969055,0.00013936716,0.00014338085,0.00029569917,0.000041084168,0.0000920699,0.000004875416],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044941547,0.00088722917,0.008493661,0.000022499184,0.00021191515,0.000016836017,0.0010548704,0.0000017782016,0.9882654,0.00002475489,0.00014183947,0.00042981628],"study_design_scores_gemma":[0.013097957,0.012761953,0.07881019,0.00048578862,0.00041665515,0.0001276352,0.00019982828,0.0027311263,0.8895199,0.00010270534,0.0014253092,0.0003209756],"about_ca_topic_score_codex":0.000009373485,"about_ca_topic_score_gemma":0.000001063193,"teacher_disagreement_score":0.09874551,"about_ca_system_score_codex":0.000091991315,"about_ca_system_score_gemma":0.00012786972,"threshold_uncertainty_score":0.5287724},"labels":[],"label_agreement":null},{"id":"W2811461221","doi":"10.1093/jac/dky155","title":"Introduction to the SAVE study (2011–15): Streptococcus pneumoniae serotyping and antimicrobial susceptibility: Assessment for Vaccine Efficacy in Canada after the introduction of PCV-13","year":2018,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Shared Health; University of Manitoba; Health Sciences Centre","funders":"University of Manitoba","keywords":"Streptococcus pneumoniae; Serotype; Antimicrobial; Microbiology; Medicine; Virology; Biology; Antibiotics","score_opus":0.007918000816049464,"score_gpt":0.27269272207785783,"score_spread":0.26477472126180834,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2811461221","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9064384,0.000016000251,0.0002990192,0.09054588,0.0010613534,0.0016166667,0.000012454188,0.000006264155,0.000003937395],"genre_scores_gemma":[0.9924697,0.00005164875,0.00014085334,0.0022594798,0.0049959123,0.00001498198,0.000002717077,0.0000286076,0.000036043297],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99823964,0.00014682524,0.0008017017,0.0003086952,0.0002288179,0.00027432054],"domain_scores_gemma":[0.9984741,0.0000839099,0.00042579503,0.00040843803,0.00051869295,0.00008906797],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009766135,0.00021543793,0.00051091495,0.00019973874,0.00018301808,0.000039271934,0.00016077432,0.00006557049,0.00010791112],"category_scores_gemma":[0.00008548621,0.00012841867,0.00012879095,0.0003091415,0.00009065929,0.00011802051,0.000038555765,0.00039622624,0.000001636025],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022559757,0.0010662741,0.1414188,0.00007498632,0.00032948362,0.000008277533,0.0016151766,0.00027546092,0.8027445,0.0000021154356,0.04135685,0.008852067],"study_design_scores_gemma":[0.0070640566,0.003367936,0.83299446,0.00012321943,0.0002554641,0.0003719161,0.0011356059,0.00009792246,0.10783042,0.0000052548057,0.046505876,0.0002478868],"about_ca_topic_score_codex":0.008202343,"about_ca_topic_score_gemma":0.1666356,"teacher_disagreement_score":0.6949141,"about_ca_system_score_codex":0.00038416777,"about_ca_system_score_gemma":0.000734215,"threshold_uncertainty_score":0.9984021},"labels":[],"label_agreement":null},{"id":"W2830450990","doi":"10.4212/cjhp.v51i5.1973","title":"Conversion of intravenous to oral/nasogastric antibiotics in critically ill patients with pneumonia","year":2018,"lang":"en","type":"article","venue":"The Canadian Journal of Hospital Pharmacy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Mechanical ventilation; Pneumonia; Intensive care unit; Critically ill; Regimen; Population; APACHE II; Enteral administration; Internal medicine; Parenteral nutrition","score_opus":0.010046818298989504,"score_gpt":0.26222267283791567,"score_spread":0.25217585453892616,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2830450990","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9922799,0.00002204641,0.000023436543,0.00657958,0.0004611141,0.00023033678,0.000014982899,0.000002967332,0.00038564517],"genre_scores_gemma":[0.9968057,0.0000063721045,0.00007991551,0.0029434974,0.00013003292,1.7169009e-7,9.954468e-7,0.000013920694,0.000019385097],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991165,0.000040623367,0.0002933704,0.00007946414,0.00020860018,0.00026146462],"domain_scores_gemma":[0.99750566,0.000028625494,0.000111328685,0.00012191629,0.0016725024,0.00055998826],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016664977,0.00010076014,0.00021883509,0.0003150885,0.00011025855,0.000016634927,0.00014673927,0.000028102637,0.0000819851],"category_scores_gemma":[0.00024250914,0.00006376053,0.000052924737,0.00039986763,0.00026050318,0.000089962974,0.000011338896,0.00026874212,0.000020784517],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015657785,0.0002900713,0.99086213,0.000034723478,0.00008912935,0.0003103288,0.0011702128,0.00001943947,0.0037065204,0.000037602502,0.0011746654,0.0021485935],"study_design_scores_gemma":[0.0030613057,0.0068946946,0.9714261,0.00024197165,0.00016116413,0.00014188216,0.00019989404,0.000024863535,0.0050032735,0.000024075778,0.012681125,0.0001396225],"about_ca_topic_score_codex":0.0021704906,"about_ca_topic_score_gemma":0.0033660806,"teacher_disagreement_score":0.019436007,"about_ca_system_score_codex":0.00016421247,"about_ca_system_score_gemma":0.0008840536,"threshold_uncertainty_score":0.32811472},"labels":[],"label_agreement":null},{"id":"W2884369594","doi":"10.1111/jpc.14128","title":"International survey of paediatric infectious diseases consultants on the management of community‐acquired pneumonia complicated by pleural empyema","year":2018,"lang":"en","type":"article","venue":"Journal of Paediatrics and Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"Australasian Society for Infectious Diseases","keywords":"Medicine; Empyema; Pneumonia; Intensive care medicine; Pleural empyema; Community-acquired pneumonia; General surgery; Surgery; Internal medicine","score_opus":0.03061889212251714,"score_gpt":0.3174263474025934,"score_spread":0.2868074552800763,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2884369594","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9911684,0.00079662836,0.000045023353,0.0064959857,0.00042231331,0.0002358766,0.0002549308,0.000008815369,0.0005720482],"genre_scores_gemma":[0.9936533,0.0045394697,0.000009388882,0.0015395001,0.00021138681,0.0000017991221,0.000022684177,0.000011108576,0.00001138461],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983267,0.00033896256,0.0007242563,0.000077406985,0.00037131758,0.00016130834],"domain_scores_gemma":[0.99759007,0.00038361578,0.0009303882,0.00019770786,0.0007091468,0.00018909074],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00094063894,0.00012244727,0.00039030405,0.00025130194,0.00028769716,0.000012497261,0.00016332447,0.000052169715,0.000019839206],"category_scores_gemma":[0.00019164824,0.00007849636,0.000088235145,0.00062502903,0.00018593221,0.00004195812,0.00006346651,0.00030792927,0.0000018148048],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002784836,0.0016228606,0.97935885,0.0003693078,0.0005206097,0.000007607214,0.0004878826,0.000007928611,0.00030332364,0.0003307813,0.011198599,0.0055137533],"study_design_scores_gemma":[0.0017294955,0.0018754036,0.9932674,0.00013120093,0.00012839964,0.0000832307,0.00018688515,0.000034457415,0.00003428445,0.000050270803,0.002415312,0.00006364523],"about_ca_topic_score_codex":0.0001259405,"about_ca_topic_score_gemma":0.00002176803,"teacher_disagreement_score":0.013908551,"about_ca_system_score_codex":0.0000631847,"about_ca_system_score_gemma":0.00014491084,"threshold_uncertainty_score":0.32009888},"labels":[],"label_agreement":null},{"id":"W2884870518","doi":"10.1093/ofid/ofv133.1432","title":"Cost-Effectiveness of Alternative Strategies for Use of 13-Valent Pneumococcal Conjugate Vaccine (PCV13) in Canadian Adults","year":2015,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Pneumococcal disease; Pathogenic organism; Pneumococcal infections; Intensive care medicine; Streptococcus pneumoniae; Pediatrics; Microbiology; Antibiotics","score_opus":0.0645517475287437,"score_gpt":0.35238338788925344,"score_spread":0.28783164036050973,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2884870518","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99209684,0.00008072758,0.000119225835,0.00017973868,0.00033295716,0.004139495,0.0006940433,0.000029517922,0.0023274356],"genre_scores_gemma":[0.9988258,0.000027907174,0.000010297671,0.00017563782,0.000034000084,0.000749725,0.00010867763,0.00003244548,0.00003550683],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984511,0.00017607598,0.0004438096,0.00031647674,0.00017487232,0.00043763904],"domain_scores_gemma":[0.99800867,0.00029751085,0.00020371289,0.00031110327,0.0005789331,0.000600073],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028661636,0.00022628222,0.00063482265,0.00038304977,0.000085556225,0.000059576847,0.00016250346,0.00009891579,0.000025920895],"category_scores_gemma":[0.0004420001,0.00019741588,0.0001614826,0.00033213038,0.00010210235,0.0005398496,0.00008936549,0.0001267616,0.0000064487235],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013415356,0.0008946859,0.990121,0.00040517608,0.00019717199,0.000035668072,0.00019648793,0.0021915867,0.0014378598,0.0020128624,0.00034318358,0.0008227816],"study_design_scores_gemma":[0.014880486,0.003968484,0.96320736,0.0011952982,0.0003194469,0.000052006366,0.0011377257,0.0016179602,0.0038124945,0.0028999527,0.006504634,0.00040413346],"about_ca_topic_score_codex":0.23218966,"about_ca_topic_score_gemma":0.34883142,"teacher_disagreement_score":0.11664177,"about_ca_system_score_codex":0.0003863784,"about_ca_system_score_gemma":0.0018751299,"threshold_uncertainty_score":0.8050386},"labels":[],"label_agreement":null},{"id":"W2884987631","doi":"10.14745/ccdr.v41is3a04","title":"Summary of the National Advisory Committee on Immunization’s Statement on re-immunization with polysaccharide 23-valent pneumococcal vaccine","year":2015,"lang":"en","type":"article","venue":"Canada Communicable Disease Report","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Booster dose; Immunization; Vaccination; Pneumococcal vaccine; Pediatrics; Population; Advisory committee; Conjugate vaccine; Pneumococcal polysaccharide vaccine; Booster (rocketry); Immunology; Pneumococcal disease; Streptococcus pneumoniae; Immune system; Environmental health; Antibiotics","score_opus":0.03376973231540608,"score_gpt":0.2812113693382234,"score_spread":0.2474416370228173,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2884987631","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9525308,0.00051432656,0.000038428792,0.016881535,0.000531837,0.0014271423,0.00018157605,0.000099402336,0.027794965],"genre_scores_gemma":[0.99462926,0.00007215793,0.000019411753,0.00265515,0.000040088642,0.000071978524,0.00032485512,0.00003790162,0.002149202],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9974732,0.0002629856,0.0006559636,0.00022297705,0.001153137,0.00023176435],"domain_scores_gemma":[0.9967121,0.00013564747,0.00042500315,0.0015028776,0.0008395075,0.00038487176],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047943846,0.00022026434,0.00032489205,0.00012285802,0.0003499074,0.000016588578,0.00033755225,0.00005312197,0.00004764898],"category_scores_gemma":[0.0005156227,0.00015228984,0.00009002098,0.00045317318,0.00008805867,0.0000834736,0.00016686872,0.00038835386,0.0000032436728],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023481618,0.0037517217,0.77646863,0.00039829037,0.0010589171,0.0009775376,0.0003591593,0.047795523,0.0070505054,0.0023731992,0.15704314,0.00037520612],"study_design_scores_gemma":[0.0036137328,0.0006589673,0.70521164,0.0010992042,0.00038966216,0.00021120765,0.0007364665,0.00095516,0.0019738714,0.00013034027,0.28455842,0.000461353],"about_ca_topic_score_codex":0.017905949,"about_ca_topic_score_gemma":0.032581247,"teacher_disagreement_score":0.12751527,"about_ca_system_score_codex":0.0011136011,"about_ca_system_score_gemma":0.0061763753,"threshold_uncertainty_score":0.99945766},"labels":[],"label_agreement":null},{"id":"W2887763988","doi":"10.1016/j.vaccine.2018.07.069","title":"Commentary on paradoxical observations pertaining to the impact of the 13-valent pneumococcal conjugate vaccine on serotype 3 Streptococcus pneumoniae infections in children","year":2018,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Centers for Disease Control and Prevention","keywords":"Streptococcus pneumoniae; Serotype; Pneumococcal conjugate vaccine; Conjugate vaccine; Pneumococcal infections; Medicine; Virology; Conjugate; Streptococcaceae; Pneumococcal vaccine; Microbiology; Immunology; Biology; Antibiotics","score_opus":0.02087470119529003,"score_gpt":0.3092072957473041,"score_spread":0.2883325945520141,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2887763988","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9607551,0.000011650408,0.0000094489415,0.036768958,0.0002783447,0.0017032513,0.00006582115,0.000061925064,0.0003454901],"genre_scores_gemma":[0.99249727,0.000015798267,0.00000398918,0.00658637,0.0005937176,0.00015826628,0.000027031943,0.000033748373,0.00008382433],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982712,0.00019064006,0.00052805134,0.0003543778,0.00026134506,0.0003943307],"domain_scores_gemma":[0.9984495,0.00020906948,0.00014672357,0.00085185433,0.00014994018,0.00019292199],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027675668,0.00029546555,0.00040030477,0.00025585465,0.00043589206,0.000021335314,0.00025100473,0.00011505374,0.0001659868],"category_scores_gemma":[0.00023111777,0.0001550317,0.0002804264,0.0010304166,0.000035375597,0.00006495491,0.0001198237,0.0006142292,0.00010034714],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015357409,0.0009122354,0.9649642,0.0000063780694,0.0001639773,0.0000025060122,0.00027471135,0.0024580394,0.023319812,0.00006757964,0.007193742,0.00048324084],"study_design_scores_gemma":[0.0019418799,0.004147737,0.9885342,0.00019540236,0.00008585228,0.00004864507,0.000046666537,0.0004911661,0.0017041239,0.000033139007,0.0026135913,0.000157592],"about_ca_topic_score_codex":0.00061207835,"about_ca_topic_score_gemma":0.00093840365,"teacher_disagreement_score":0.03174214,"about_ca_system_score_codex":0.00023136882,"about_ca_system_score_gemma":0.00012660435,"threshold_uncertainty_score":0.6322009},"labels":[],"label_agreement":null},{"id":"W2888279710","doi":"10.1016/j.vaccine.2018.07.037","title":"Incidence and aetiology of bacterial meningitis among children aged 1–59 months in South Asia: systematic review and meta-analysis","year":2018,"lang":"en","type":"review","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Centre for Global Health Research; Hospital for Sick Children; University of Toronto","funders":"Medical Research Council","keywords":"Incidence (geometry); Etiology; Bacterial meningitis; Meta-analysis; Meningitis; Medicine; Epidemiology; Pediatrics; Immunology; Internal medicine","score_opus":0.037328774445836065,"score_gpt":0.31976165900548964,"score_spread":0.2824328845596536,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2888279710","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0030119016,0.99374497,0.0000052426853,0.00005404902,0.000035131012,0.0029914274,0.00010897832,0.000020901893,0.000027423419],"genre_scores_gemma":[0.005224162,0.9939839,0.000021900685,0.00005259514,0.000065353874,0.00035904598,0.00013372107,0.000029046669,0.00013027899],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9969848,0.0006795554,0.0014843704,0.0004954687,0.00014740114,0.00020839817],"domain_scores_gemma":[0.99797,0.00018595584,0.0010213251,0.0005989383,0.000094402974,0.00012939528],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008534373,0.00042036653,0.009540095,0.0006726738,0.00005352092,0.000014534824,0.00012283963,0.0003024808,0.00031143043],"category_scores_gemma":[0.00044648274,0.00025359396,0.0009816486,0.0008877761,0.000053572832,0.0000587362,0.00010820207,0.00031545394,0.000007633423],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000067811966,0.00006380834,0.0057606786,0.87766886,0.1158275,0.00004351232,0.00016943201,1.2929303e-7,0.0000047060175,0.000006032279,0.00011944885,0.00032912297],"study_design_scores_gemma":[0.00037444854,0.00018368708,0.0082061,0.04075013,0.9490654,0.00041761057,0.000008110765,7.4484586e-7,7.199607e-7,0.000002508527,0.0007571347,0.00023343493],"about_ca_topic_score_codex":0.0000582698,"about_ca_topic_score_gemma":0.00018167633,"teacher_disagreement_score":0.8369187,"about_ca_system_score_codex":0.00003693578,"about_ca_system_score_gemma":0.00008050079,"threshold_uncertainty_score":0.99999166},"labels":[],"label_agreement":null},{"id":"W2888911213","doi":"10.1097/inf.0000000000002174","title":"Pneumococcal Colonization and the Nasopharyngeal Microbiota of Children in Botswana","year":2018,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; McMaster University; St. Joseph’s Healthcare Hamilton","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences","keywords":"Colonization; Streptococcus pneumoniae; Microbiology; Pneumococcal infections; Medicine; Immunology; Biology; Antibiotics","score_opus":0.004946187959232564,"score_gpt":0.23781692488631392,"score_spread":0.23287073692708135,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2888911213","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958484,0.00064902677,0.000047236546,0.0022329378,0.00031706234,0.00042843856,0.000008738179,0.000019706184,0.00044843016],"genre_scores_gemma":[0.99684143,0.000824982,0.0000031406055,0.0005634346,0.0016984653,0.0000091307265,0.000001814827,0.000013486583,0.000044103715],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99897814,0.00021282617,0.0003296962,0.000116065436,0.00016568998,0.00019758014],"domain_scores_gemma":[0.99916315,0.00013770667,0.00019600042,0.00017807071,0.00016415212,0.0001608968],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00050139066,0.00011907839,0.00020956433,0.00020446637,0.0004186854,0.00003537195,0.00008959772,0.000055176937,0.000060555107],"category_scores_gemma":[0.00026091287,0.000062718,0.00011348591,0.0004844063,0.000407644,0.00006925991,0.00004818818,0.00038742225,0.000013515235],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029325837,0.00018683836,0.99751514,0.000020434189,0.00005982293,0.000012256153,0.00027534983,0.000044438344,0.00086928374,0.00011472926,0.00039680224,0.00021164225],"study_design_scores_gemma":[0.0037368033,0.00023935607,0.9930231,0.000018548415,0.0005340869,0.001474534,0.000021337053,0.0002169202,0.00002573525,0.00052018906,0.00011224365,0.0000771572],"about_ca_topic_score_codex":0.000039641396,"about_ca_topic_score_gemma":0.00001704413,"teacher_disagreement_score":0.0044920556,"about_ca_system_score_codex":0.00005545457,"about_ca_system_score_gemma":0.0002821165,"threshold_uncertainty_score":0.3220232},"labels":[],"label_agreement":null},{"id":"W2889372357","doi":"10.14745/ccdr.v40i17a04","title":"Collaboration on a public health-driven vaccine initiative","year":2014,"lang":"en","type":"article","venue":"Canada Communicable Disease Report","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"National Research Council Canada; Public Health Agency of Canada","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Public health; Medicine; Population; Hib vaccine; Disease; Haemophilus influenzae; Environmental health; Immunization; Conjugate vaccine; Immunology; Biology; Microbiology; Antibiotics","score_opus":0.04067997605316825,"score_gpt":0.30230793428164615,"score_spread":0.2616279582284779,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2889372357","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.64273304,0.00065170694,0.00032733998,0.29314888,0.0008559556,0.0015645386,0.00013733358,0.0003253178,0.060255907],"genre_scores_gemma":[0.97990745,0.0000566454,0.000031266503,0.018974856,0.00008968511,0.0000801947,0.00030099618,0.000022476514,0.00053641957],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984579,0.0002586613,0.00040750415,0.00021543997,0.0003659705,0.00029453868],"domain_scores_gemma":[0.99719226,0.00012186114,0.0002364679,0.0012026856,0.00035707373,0.00088963937],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003311736,0.00014657092,0.00032902564,0.00010098502,0.00042787418,0.000034374207,0.00012144246,0.00004067184,0.000080997466],"category_scores_gemma":[0.0009265282,0.00013119946,0.00006126387,0.00039510484,0.000034947334,0.00009665141,0.000055779637,0.00025381072,0.000008505307],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003508721,0.0022601038,0.5739494,0.00059220596,0.0007528724,0.004446782,0.00052802765,0.0009245037,0.0010305318,0.008508218,0.39668134,0.009975122],"study_design_scores_gemma":[0.0007204356,0.00019599294,0.15603939,0.000098760815,0.00003953349,0.00012056788,0.00017267105,0.000730522,0.000020076388,0.000039011982,0.8416853,0.00013774265],"about_ca_topic_score_codex":0.030934626,"about_ca_topic_score_gemma":0.27639726,"teacher_disagreement_score":0.44500396,"about_ca_system_score_codex":0.00070007594,"about_ca_system_score_gemma":0.00879585,"threshold_uncertainty_score":0.9968234},"labels":[],"label_agreement":null},{"id":"W2890431752","doi":"10.1007/s11908-018-0651-8","title":"Moving Past the Routine Use of Macrolides—Reviewing the Role of Combination Therapy in Community-Acquired Pneumonia","year":2018,"lang":"en","type":"review","venue":"Current Infectious Disease Reports","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Combination therapy; Community-acquired pneumonia; Randomized controlled trial; Intensive care medicine; Pneumonia; Observational study; Population; Internal medicine; Clinical trial","score_opus":0.07468012088008666,"score_gpt":0.3549447056201612,"score_spread":0.28026458474007454,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2890431752","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0688643,0.92710197,0.000007957184,0.000052081497,0.0010115664,0.0026956105,0.00003659749,0.00006959869,0.00016030119],"genre_scores_gemma":[0.20134802,0.7978832,5.5099173e-7,0.00004638563,0.0001956788,0.00034860888,0.00009734549,0.000056537407,0.000023671488],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99529415,0.0015903251,0.001904237,0.0003455078,0.0005124048,0.00035340013],"domain_scores_gemma":[0.9944987,0.000782833,0.0024396004,0.0016472026,0.00045833006,0.00017332703],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0017310535,0.0005023264,0.0016902038,0.0003696692,0.00039347835,0.000053857024,0.00021344468,0.00018432988,0.0000277811],"category_scores_gemma":[0.0010744235,0.00027759565,0.0010355272,0.0009980642,0.00030929444,0.000139651,0.0001851656,0.0009049374,0.0000065272934],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023068322,0.0027401592,0.23812018,0.017596044,0.0006093975,0.00006960003,0.00041298397,0.00001050683,0.00007585185,0.000073027244,0.00015117458,0.74011797],"study_design_scores_gemma":[0.00034692662,0.00020987887,0.020386623,0.023172854,0.0016907124,0.00043171435,0.000026799713,0.000025147076,0.000012316608,0.00013216892,0.953289,0.00027586662],"about_ca_topic_score_codex":0.00016245698,"about_ca_topic_score_gemma":0.000023266875,"teacher_disagreement_score":0.9531378,"about_ca_system_score_codex":0.00031521675,"about_ca_system_score_gemma":0.0006427069,"threshold_uncertainty_score":0.99996763},"labels":[],"label_agreement":null},{"id":"W2891146645","doi":"10.1016/j.plasmid.2018.09.005","title":"Multi-target plasmid controls for conventional and real-time PCR-based serotyping of Streptococcus pneumoniae","year":2018,"lang":"en","type":"article","venue":"Plasmid","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; Dalhousie University; Izaak Walton Killam Health Centre; Nova Scotia Health Authority","funders":"","keywords":"Plasmid; Serotype; Biology; Multiplex polymerase chain reaction; Amplicon; Streptococcus pneumoniae; Primer (cosmetics); Polymerase chain reaction; Escherichia coli; Multiplex; Molecular biology; DNA; Microbiology; Gene; Genetics; Chemistry; Antibiotics","score_opus":0.023576913538696547,"score_gpt":0.29584966763596815,"score_spread":0.2722727540972716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2891146645","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99427,0.00003153336,0.0018370659,0.00087390473,0.00026697578,0.0012228454,0.00030667175,0.00010861615,0.001082364],"genre_scores_gemma":[0.99578166,0.000008678591,0.002699761,0.0004557754,0.00021880516,0.00020020916,0.00007292643,0.000032004973,0.0005301641],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998855,0.000039314236,0.00036643475,0.00029083455,0.00017212567,0.00027629867],"domain_scores_gemma":[0.9988621,0.00031455784,0.00016954521,0.00020244454,0.0002808676,0.00017051531],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020838538,0.00017716279,0.00039277354,0.00015028939,0.0001748546,0.000014428187,0.000060097267,0.00013501236,0.000257041],"category_scores_gemma":[0.0002019254,0.00015593579,0.0001467329,0.00010981719,0.0002886078,0.00006841059,0.000021832117,0.000107533764,0.00005748572],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027521467,0.00032938048,0.09246633,0.00020298139,0.00015993907,0.000005114083,0.00006340849,0.000035254667,0.9052917,0.00015129331,0.00081235333,0.00020707722],"study_design_scores_gemma":[0.031768277,0.0053358264,0.29012755,0.0008975777,0.0006397125,0.00008104827,0.00013908313,0.121759705,0.44460568,0.00033334031,0.1034389,0.0008733168],"about_ca_topic_score_codex":0.000013052222,"about_ca_topic_score_gemma":0.000013574411,"teacher_disagreement_score":0.46068597,"about_ca_system_score_codex":0.000037695314,"about_ca_system_score_gemma":0.00019551504,"threshold_uncertainty_score":0.6358877},"labels":[],"label_agreement":null},{"id":"W2892131206","doi":"10.14336/ad.2018.0512","title":"Efficacy and Safety of the Pneumococcal Conjugate-13 Valent Vaccine in Adults","year":2018,"lang":"en","type":"review","venue":"Aging and Disease","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Medicine; Immunogenicity; Adverse effect; Pneumonia; Randomized controlled trial; Pneumococcal conjugate vaccine; Observational study; Dosing; Pneumococcal pneumonia; Pneumococcal vaccine; Community-acquired pneumonia; Streptococcus pneumoniae; Internal medicine; Pediatrics; Intensive care medicine; Immunology; Immune system; Antibiotics","score_opus":0.01943798317226035,"score_gpt":0.310102985521162,"score_spread":0.29066500234890164,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2892131206","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.042922158,0.955441,7.4831877e-7,0.00039808534,0.00015731403,0.0007965792,0.000046403195,0.000020833202,0.00021690494],"genre_scores_gemma":[0.05122278,0.9483079,0.000001024812,0.00016545628,0.00014412758,0.00002954941,0.000016179933,0.00001851373,0.00009450838],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9990098,0.00010469007,0.0003611735,0.00027024603,0.000102005055,0.00015208438],"domain_scores_gemma":[0.9991164,0.0001120156,0.00012674845,0.00030707713,0.000032433898,0.0003053072],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012093594,0.00020060134,0.0006501397,0.000100481004,0.00008517701,0.0000086899,0.000058402016,0.0000828361,0.000010945779],"category_scores_gemma":[0.00020107535,0.00011337848,0.00015979292,0.00016638632,0.00010684476,0.000021507496,0.00008521533,0.00021865948,0.000005212226],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007017868,0.0011404351,0.113315985,0.1124967,0.000452707,0.00021553508,0.0005101067,0.0000018021822,0.00002116236,0.00017797953,0.0011008361,0.769865],"study_design_scores_gemma":[0.002930663,0.00012083311,0.19289628,0.053342547,0.0016693763,0.00006786798,0.000015195475,0.000013497721,7.235321e-7,0.000027801896,0.7486872,0.0002280346],"about_ca_topic_score_codex":0.00001980209,"about_ca_topic_score_gemma":0.000008785054,"teacher_disagreement_score":0.7696369,"about_ca_system_score_codex":0.00002487087,"about_ca_system_score_gemma":0.00023053784,"threshold_uncertainty_score":0.46234405},"labels":[],"label_agreement":null},{"id":"W2894762090","doi":"10.1093/cid/ciy842","title":"Invasive Pneumococcal Disease in UK Children &lt;1 Year of Age in the Post–13-Valent Pneumococcal Conjugate Vaccine Era: What Are the Risks Now?","year":2018,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Medicine; Pneumococcal disease; Pneumococcal conjugate vaccine; Streptococcus pneumoniae; Pneumococcal infections; Disease; Immunology; Pediatrics; Virology; Microbiology; Internal medicine; Antibiotics","score_opus":0.03607191965857789,"score_gpt":0.3512947010305575,"score_spread":0.3152227813719796,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2894762090","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99185306,0.00056495913,0.000003900348,0.004711742,0.00065251795,0.0016974511,0.000104173145,0.00008523753,0.00032695217],"genre_scores_gemma":[0.9928303,0.0016327185,6.197265e-7,0.0041591683,0.0010305904,0.00019740204,0.00007411227,0.000041165775,0.00003392045],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99637616,0.0008820013,0.0011994403,0.0006182542,0.00040836172,0.0005157902],"domain_scores_gemma":[0.9963304,0.0015882538,0.0003907824,0.0009790829,0.00023590898,0.00047560042],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007424276,0.0003740235,0.00080298143,0.0002482778,0.0002482585,0.00010247248,0.00037978354,0.00022247038,0.0001200869],"category_scores_gemma":[0.0027391242,0.00022106865,0.00060074474,0.000702291,0.0009252449,0.00022041924,0.00018668032,0.00095810473,0.00019961703],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029888097,0.002544374,0.9948725,0.00006296869,0.00013842962,0.0002330019,0.00018005408,0.00004379258,0.00049510814,0.00006179495,0.00043363706,0.000635453],"study_design_scores_gemma":[0.0034693377,0.0013029403,0.9924707,0.00045120064,0.00044129541,0.000024270199,0.000297927,0.000031948115,0.00004216258,0.00060298195,0.0006157752,0.0002494946],"about_ca_topic_score_codex":0.00012052436,"about_ca_topic_score_gemma":0.0032843475,"teacher_disagreement_score":0.0031704567,"about_ca_system_score_codex":0.0000913077,"about_ca_system_score_gemma":0.0004267129,"threshold_uncertainty_score":0.9014918},"labels":[],"label_agreement":null},{"id":"W2896853011","doi":"10.17269/s41997-018-0138-2","title":"Limited impact of pneumococcal vaccines on invasive pneumococcal disease in Nunavik (Quebec)","year":2018,"lang":"en","type":"article","venue":"Canadian Journal of Public Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Nunavik Regional Board of Health and Social Services; Institut universitaire de cardiologie et de pneumologie de Québec; Université Laval; Institut National de Santé Publique du Québec","funders":"GlaxoSmithKline; Pfizer","keywords":"Serotype; Pneumococcal conjugate vaccine; Medicine; Outbreak; Streptococcus pneumoniae; Incidence (geometry); Epidemiology; Pneumococcal polysaccharide vaccine; Immunization; Pneumococcal disease; Vaccination; Pediatrics; Conjugate vaccine; Pneumococcal infections; Virology; Environmental health; Immunology; Biology; Microbiology; Internal medicine; Antigen; Antibiotics","score_opus":0.05114695549923636,"score_gpt":0.3352423656864205,"score_spread":0.28409541018718415,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2896853011","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9761992,0.00015020733,0.000015925183,0.02243989,0.0004099996,0.00030360805,0.000048246675,0.000008926873,0.00042401283],"genre_scores_gemma":[0.9973394,0.00004749859,0.0000097240945,0.0018451805,0.0006220297,0.000004458854,0.000009901427,0.000025814647,0.000095951305],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9977044,0.0002766728,0.00084316795,0.00018230682,0.00024445023,0.0007489913],"domain_scores_gemma":[0.99353087,0.00015151103,0.0004358955,0.00029885178,0.0006527975,0.0049300687],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00089463184,0.00019791082,0.0005788964,0.001638686,0.00015063483,0.000039591636,0.00018400149,0.00011365541,0.0003466959],"category_scores_gemma":[0.0018727529,0.0001509383,0.00028453028,0.0008567554,0.00019982849,0.00022092015,0.00001023349,0.0005527033,0.000024955962],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000770076,0.00026933904,0.987672,0.00009333594,0.0001015002,0.00041691263,0.0009771552,0.00003528528,0.0027397892,0.00019341984,0.0016000893,0.005824206],"study_design_scores_gemma":[0.0012307626,0.0028926623,0.9880705,0.00038337338,0.000019918496,0.00020909967,0.00017546825,0.000039090086,0.00004085331,0.00006505235,0.006760463,0.00011278265],"about_ca_topic_score_codex":0.06701238,"about_ca_topic_score_gemma":0.34478888,"teacher_disagreement_score":0.2777765,"about_ca_system_score_codex":0.001989571,"about_ca_system_score_gemma":0.04393164,"threshold_uncertainty_score":0.96148837},"labels":[],"label_agreement":null},{"id":"W2897172993","doi":"10.1093/ofid/ofy210.1954","title":"2301. <i>Streptococcus pneumoniae S</i>erotyping: Assessing the Performance of a PCR- and Sequencing-Based Testing Algorithm","year":2018,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Nova Scotia Health Authority; Izaak Walton Killam Health Centre; Dalhousie University","funders":"","keywords":"Serotype; Sanger sequencing; Streptococcus pneumoniae; DNA sequencing; Multiplex polymerase chain reaction; Polymerase chain reaction; Microbiology; Virology; Medicine; Biology; Gene; Genetics; Antibiotics","score_opus":0.027791761853947196,"score_gpt":0.3112789706784034,"score_spread":0.28348720882445616,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2897172993","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9881383,0.00010354974,0.0003438085,0.0005036768,0.00021247506,0.0010042436,0.000026888578,0.00013711852,0.009529892],"genre_scores_gemma":[0.99788094,0.000009264176,0.00012523739,0.0015536604,0.00015490258,0.00015433367,0.000009380081,0.0000345097,0.00007778955],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986467,0.00008431494,0.0003448615,0.00033528905,0.00021879307,0.0003700616],"domain_scores_gemma":[0.998555,0.00022806246,0.00024143599,0.00043194875,0.0003443768,0.00019917196],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021989753,0.00022792755,0.00034417436,0.00012622798,0.0009189753,0.00020735264,0.00018651035,0.00007808209,0.000052279647],"category_scores_gemma":[0.00027127942,0.00015848935,0.00009408005,0.0005195563,0.0005197191,0.00038458008,0.00019133333,0.00020552699,0.000018783629],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00000964631,0.0001812832,0.96033376,0.00010149796,0.00006534832,0.000010237485,0.000051325067,0.000057206093,0.01588941,0.0000284097,0.00017921682,0.023092642],"study_design_scores_gemma":[0.0028610902,0.0032520192,0.93071395,0.0011567152,0.00061124435,0.00027920175,0.00049040245,0.03880589,0.014844306,0.00022996201,0.0062123123,0.00054289465],"about_ca_topic_score_codex":0.00014583602,"about_ca_topic_score_gemma":0.000036827907,"teacher_disagreement_score":0.038748685,"about_ca_system_score_codex":0.00010840395,"about_ca_system_score_gemma":0.0006904259,"threshold_uncertainty_score":0.7068108},"labels":[],"label_agreement":null},{"id":"W2897275626","doi":"10.1093/ofid/ofy210.1273","title":"1442. Pneumonia Hospitalizations Averted With 13-Valent Pneumococcal Conjugate Vaccination of Adults Aged 18–64 Years With Diabetes in the United States","year":2018,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"","keywords":"Medicine; Pneumonia; Incidence (geometry); Diabetes mellitus; Population; Pneumococcal pneumonia; Pediatrics; Vaccination; Pneumococcal conjugate vaccine; Streptococcus pneumoniae; Internal medicine; Environmental health; Immunology","score_opus":0.00838859097426202,"score_gpt":0.2624282801072792,"score_spread":0.25403968913301717,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2897275626","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953391,0.000026992815,0.000053644126,0.0007457091,0.000084067826,0.0017438132,0.00011123177,0.00009664199,0.0017988142],"genre_scores_gemma":[0.99807227,0.000043125885,0.0000063921025,0.0010511049,0.000040024526,0.000326996,0.00035001888,0.000043474825,0.00006659128],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984211,0.00018165854,0.00036007186,0.000339746,0.00031968122,0.00037777383],"domain_scores_gemma":[0.9986455,0.00012839244,0.00022590252,0.00044605223,0.00039808263,0.00015610535],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014434289,0.0002508195,0.0003733864,0.00037144835,0.00031237994,0.00011855315,0.00023891617,0.000076223994,0.0001538052],"category_scores_gemma":[0.00008999117,0.00016004343,0.00007419433,0.0013195843,0.0002596887,0.00031522737,0.00008105714,0.00018234704,0.00002248293],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023337238,0.001111546,0.99544644,0.00007869085,0.00017001375,0.000027996972,0.00065637456,0.00033536952,0.0008843004,0.00017574987,0.0005610636,0.00031906413],"study_design_scores_gemma":[0.0039090523,0.003730711,0.9881715,0.00037346565,0.00029312342,0.000025451052,0.0007655639,0.00084367197,0.00048748695,0.0002122177,0.00094502344,0.0002427094],"about_ca_topic_score_codex":0.0005846106,"about_ca_topic_score_gemma":0.0030915672,"teacher_disagreement_score":0.0072749346,"about_ca_system_score_codex":0.00008810624,"about_ca_system_score_gemma":0.00019047146,"threshold_uncertainty_score":0.6526382},"labels":[],"label_agreement":null},{"id":"W2898221843","doi":"10.1093/ofid/ofy210.1277","title":"1446. Correlation Between Adult Invasive and Noninvasive <i>Streptococcus pneumoniae</i> Disease in 13-Valent Pneumococcal Conjugate Vaccine Serotypes in the United States","year":2018,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"","keywords":"Streptococcus pneumoniae; Serotype; Medicine; Pneumonia; Pneumococcal conjugate vaccine; Pneumococcal disease; Pneumococcal pneumonia; Conjugate vaccine; Pneumococcal vaccine; Community-acquired pneumonia; Microbiology; Virology; Internal medicine; Antibiotics; Biology","score_opus":0.01272658492453442,"score_gpt":0.2828968323669295,"score_spread":0.27017024744239504,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2898221843","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99036235,0.00009882017,0.000018886296,0.00462362,0.00017296484,0.0030234007,0.00022224658,0.00009312228,0.0013845676],"genre_scores_gemma":[0.9943545,0.0003159576,0.0000015176213,0.0039153886,0.00016188758,0.0006337401,0.00049611216,0.00004508835,0.00007581044],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9976287,0.00033875628,0.00059074,0.0005876915,0.0002941795,0.00055994635],"domain_scores_gemma":[0.99800354,0.0005280879,0.00022297881,0.00050013466,0.00031631012,0.00042892472],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00022349309,0.00039006185,0.0005277153,0.00047834901,0.00044181544,0.0002156667,0.00023807664,0.00013235527,0.0000726183],"category_scores_gemma":[0.0005424976,0.00028908567,0.00011743626,0.0010378576,0.00026987767,0.0004573249,0.00026064148,0.0004165712,0.000093312075],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018065485,0.0005944062,0.99638754,0.000096397955,0.00008309419,0.00020990173,0.0006252494,0.00025527138,0.0003554247,0.000244213,0.0005974056,0.0003704172],"study_design_scores_gemma":[0.003969406,0.0011356117,0.9885462,0.00045711925,0.00031499474,0.00004471236,0.00078507804,0.0005288932,0.00020800729,0.0016081374,0.0020464037,0.00035544156],"about_ca_topic_score_codex":0.0015828038,"about_ca_topic_score_gemma":0.0065772524,"teacher_disagreement_score":0.007841369,"about_ca_system_score_codex":0.00016849223,"about_ca_system_score_gemma":0.0003403635,"threshold_uncertainty_score":0.99995613},"labels":[],"label_agreement":null},{"id":"W2898305352","doi":"10.7939/r39z90p4m","title":"Identifying Prognostic Factors for Adverse Outcomes in Adults with Bacteremic Pneumococcal Pneumonia","year":2016,"lang":"en","type":"article","venue":"University of Alberta Library","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Pneumonia; Pneumococcal pneumonia; Medicine; Adverse effect; Intensive care medicine; Streptococcus pneumoniae; Pneumococcal disease; Internal medicine; Antibiotics; Microbiology","score_opus":0.011446227127854924,"score_gpt":0.21196750452411295,"score_spread":0.20052127739625802,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2898305352","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964101,0.0000040916634,0.00007004277,0.0015915311,0.00006546437,0.0005298259,0.00001540229,0.000047647667,0.0012659316],"genre_scores_gemma":[0.9952394,0.00001668172,0.000155641,0.00005410879,0.000014315597,0.0000012184919,0.000020087553,0.00001909655,0.004479468],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99929047,0.0000245844,0.00014029408,0.00023427888,0.00009860435,0.00021174389],"domain_scores_gemma":[0.9991192,0.00044443054,0.000090670976,0.00018879936,0.000027126276,0.00012977247],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000206346,0.00014017167,0.00028384765,0.00024172664,0.00007067449,0.000004193187,0.00011670014,0.00009195666,0.00017517683],"category_scores_gemma":[0.00005897712,0.0000943343,0.00012859596,0.00016033527,0.000118960685,0.00060338,0.00005238056,0.000087155546,0.000017375234],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031461948,0.00016231448,0.98270994,0.00012738862,0.000068712376,0.000032708467,0.0014279977,8.2554635e-7,0.01483862,0.00010733642,0.000037974405,0.00017157708],"study_design_scores_gemma":[0.0031707548,0.00039376726,0.9907904,0.0007301202,0.000077918005,0.0000121585745,0.001169757,0.000008395857,0.0009855212,0.00002562054,0.0024930143,0.00014257344],"about_ca_topic_score_codex":0.00014024763,"about_ca_topic_score_gemma":0.00037688744,"teacher_disagreement_score":0.013853099,"about_ca_system_score_codex":0.000034366196,"about_ca_system_score_gemma":0.00013373977,"threshold_uncertainty_score":0.38468412},"labels":[],"label_agreement":null},{"id":"W2898593856","doi":"10.1093/cid/ciy920","title":"Effectiveness of 13-Valent Pneumococcal Conjugate Vaccine Against Invasive Disease Caused by Serotype 3 in Children: A Systematic Review and Meta-analysis of Observational Studies","year":2018,"lang":"en","type":"review","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":119,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada); Université Laval","funders":"","keywords":"Observational study; Meta-analysis; Serotype; Pneumococcal conjugate vaccine; Pneumococcal disease; Medicine; Conjugate vaccine; Disease; Pediatrics; Streptococcus pneumoniae; Virology; Internal medicine; Immunology; Immunization; Biology; Antibody; Microbiology; Antibiotics","score_opus":0.1794474009701427,"score_gpt":0.45228078634484725,"score_spread":0.2728333853747046,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2898593856","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.020916685,0.9699431,0.000002323399,0.000056631543,0.000094997384,0.0069519533,0.0019758209,0.000050140512,0.000008340232],"genre_scores_gemma":[0.022239622,0.97452456,4.837587e-7,0.0005137534,0.000046885507,0.0017691945,0.0008260246,0.00005276731,0.000026731983],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9914605,0.003291527,0.003679079,0.0008804088,0.00040795468,0.0002805322],"domain_scores_gemma":[0.9895726,0.0060405578,0.0021632353,0.0009254524,0.00081808993,0.00048010462],"candidate_categories":["metaresearch","metaepi_narrow","metaepi_broad"],"consensus_categories":[],"category_scores_codex":[0.0016744973,0.0007255954,0.016144644,0.0006060868,0.00008664617,0.00001426418,0.00018742976,0.0002876285,0.000044983157],"category_scores_gemma":[0.009363593,0.00046701878,0.0049700188,0.0017248114,0.0005030802,0.00009577233,0.00018080765,0.0004351517,0.000010962915],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017367882,0.001257077,0.116301,0.66024905,0.22198987,0.000013951236,0.000004225743,0.0000045735856,0.0000011488548,0.000010647275,0.000103330916,0.00004773525],"study_design_scores_gemma":[0.00072218623,0.00045737912,0.12170051,0.08963165,0.7868896,0.0000044717426,0.0000026526031,0.000002303204,5.8219445e-7,0.000020001806,0.00025032402,0.00031831465],"about_ca_topic_score_codex":0.000009047361,"about_ca_topic_score_gemma":0.000028918837,"teacher_disagreement_score":0.57061744,"about_ca_system_score_codex":0.00014302165,"about_ca_system_score_gemma":0.00072049757,"threshold_uncertainty_score":0.99977815},"labels":[],"label_agreement":null},{"id":"W2898638500","doi":"10.1093/ofid/ofy210.754","title":"747. Antibiotic Therapy for Community-Acquired Pneumonia: A Systematic Review and Network Meta-Analysis of Randomized Trials","year":2018,"lang":"en","type":"review","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University Health Network; Impact","funders":"","keywords":"Medicine; Meta-analysis; Pneumonia; Randomized controlled trial; Intensive care medicine; Antibiotic therapy; Systematic review; Community-acquired pneumonia; Antibiotics; MEDLINE; Internal medicine; Political science; Microbiology","score_opus":0.19515909102296083,"score_gpt":0.43720259680033235,"score_spread":0.24204350577737152,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2898638500","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000004406003,0.9604288,0.000090116504,0.00018448444,0.0001831949,0.037570108,0.00093679025,0.000084521576,0.0005176048],"genre_scores_gemma":[0.00041191804,0.9892873,0.000016509755,0.0019036197,0.00008496146,0.007250692,0.00060455926,0.000108249944,0.00033218577],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9832495,0.011286928,0.0040966403,0.0005705187,0.00031681987,0.00047957766],"domain_scores_gemma":[0.9828784,0.010188971,0.004313538,0.0017386087,0.0005554917,0.0003249883],"candidate_categories":["metaepi_narrow","metaepi_broad"],"consensus_categories":["metaepi_broad"],"category_scores_codex":[0.009948708,0.00091795623,0.04972264,0.0006714734,0.0007058132,0.00021308767,0.00056084455,0.00034677607,0.00024581447],"category_scores_gemma":[0.007493142,0.0005057326,0.017295565,0.0017939805,0.00045575795,0.00016163562,0.00030248088,0.000284675,0.000014371016],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040386015,0.0005378882,0.000025602267,0.52053297,0.4761953,0.0000024963908,0.000014238678,0.0000011616116,2.7438773e-7,0.000135968,0.0011460166,0.0010042507],"study_design_scores_gemma":[0.0127187325,0.0005481409,0.0000048493366,0.078513615,0.8732403,0.000050572045,0.000011928647,0.000006168822,1.9538008e-7,0.000156938,0.03435101,0.00039756854],"about_ca_topic_score_codex":0.00010790892,"about_ca_topic_score_gemma":0.00006719039,"teacher_disagreement_score":0.44201934,"about_ca_system_score_codex":0.000089546535,"about_ca_system_score_gemma":0.00048022496,"threshold_uncertainty_score":0.9997394},"labels":[],"label_agreement":null},{"id":"W2898973539","doi":"10.14740/jocmr3592w","title":"<i>Mycoplasma Pneumoniae</i> Pneumonia: Walking Pneumonia Can Cripple the Susceptible","year":2018,"lang":"en","type":"article","venue":"Journal of Clinical Medicine Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumonia; Internal medicine; Mycoplasma pneumoniae; Creatinine; Mycoplasma pneumonia; Intensive care unit; Sepsis; Septic shock; Intensive care medicine","score_opus":0.2432779967466488,"score_gpt":0.5407293098272897,"score_spread":0.29745131308064093,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2898973539","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8309386,0.00052638724,0.000069186055,0.15115657,0.0033284817,0.0005689136,0.0000068862537,0.00004854403,0.013356418],"genre_scores_gemma":[0.9784241,0.001577757,0.00009498567,0.0039446433,0.013478762,0.00001587655,0.0000019806937,0.00006623147,0.0023956976],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.99096346,0.0016898088,0.0028826077,0.00048249605,0.0028999534,0.001081698],"domain_scores_gemma":[0.9875641,0.0053813597,0.0008622229,0.0010030984,0.003949595,0.0012396273],"candidate_categories":["metaresearch","sts","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.017913451,0.00033309174,0.0014560906,0.00075456983,0.0009237632,0.00006934313,0.00084399694,0.00039613043,0.00064792845],"category_scores_gemma":[0.013295714,0.00017546934,0.00059069006,0.0017096096,0.0029261126,0.00017862023,0.00024779022,0.0047156406,0.00024072046],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011809823,0.0015244232,0.5068007,0.0002623514,0.0009122193,0.0018166576,0.0021118564,0.000005979291,0.30270085,0.00078934385,0.11320465,0.06868999],"study_design_scores_gemma":[0.0064711245,0.029683499,0.10660242,0.0018038785,0.0005217707,0.012225859,0.0025410869,0.00023728538,0.0023639975,0.0018623227,0.8353387,0.00034802573],"about_ca_topic_score_codex":0.000090766,"about_ca_topic_score_gemma":0.00025722067,"teacher_disagreement_score":0.7221341,"about_ca_system_score_codex":0.00019086989,"about_ca_system_score_gemma":0.0016391537,"threshold_uncertainty_score":0.99978733},"labels":[],"label_agreement":null},{"id":"W2898998912","doi":"10.1093/ofid/ofy210.1259","title":"1428. Modeling Reductions in Antibiotic Prescriptions due to Otitis Media in Canada as a Result of Pneumococcal Conjugate Vaccination","year":2018,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Pfizer (Canada)","funders":"","keywords":"ABX test; Medicine; Medical prescription; Vaccination; Incidence (geometry); Pediatrics; Otitis; Pneumococcal conjugate vaccine; Environmental health; Antibiotics; Streptococcus pneumoniae; Surgery; Immunology","score_opus":0.015552926140118628,"score_gpt":0.28618180214237543,"score_spread":0.2706288760022568,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2898998912","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98433673,0.000042011732,0.00008018338,0.0020812675,0.00066821044,0.0012017699,0.00013075602,0.00004043642,0.0114186285],"genre_scores_gemma":[0.9989399,0.000030396055,0.00001388093,0.0006160402,0.00009521898,0.00010601995,0.00004495966,0.000026739059,0.00012687215],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99838746,0.0000987366,0.00054374523,0.0003678471,0.00022432843,0.0003779115],"domain_scores_gemma":[0.99891764,0.00006776264,0.000099771874,0.00034614388,0.0002717536,0.0002969583],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001262431,0.00018008713,0.00040829575,0.00049169036,0.0001991202,0.000049183618,0.00016129341,0.00007513758,0.00022960381],"category_scores_gemma":[0.000666569,0.0001798936,0.00006802542,0.0009451003,0.000053576117,0.00031762762,0.00013756807,0.00019058929,0.000040945113],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023306129,0.0014554698,0.9634196,0.00012501027,0.00011312166,0.0002014033,0.0007436501,0.009640502,0.016214073,0.0017174098,0.0026589972,0.0034776635],"study_design_scores_gemma":[0.002659133,0.000697923,0.98468304,0.00053322583,0.00013230152,0.00017181643,0.0012991731,0.0052693896,0.0016751786,0.0013617361,0.0011778126,0.00033925456],"about_ca_topic_score_codex":0.58843875,"about_ca_topic_score_gemma":0.9373947,"teacher_disagreement_score":0.34895593,"about_ca_system_score_codex":0.0007100565,"about_ca_system_score_gemma":0.002280997,"threshold_uncertainty_score":0.7335848},"labels":[],"label_agreement":null},{"id":"W2899016542","doi":"10.1093/ofid/ofy210.1257","title":"1426. Impact of Routine Pediatric PCV13 on the Incidence and Severity of Invasive Pneumococcal Disease in Adults in Ontario, Canada","year":2018,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; Mount Sinai Hospital; Sinai Health System","funders":"","keywords":"Medicine; Incidence (geometry); Case fatality rate; Pediatrics; Meningitis; Population; Pneumococcal disease; Mechanical ventilation; Epidemiology; Streptococcus pneumoniae; Internal medicine","score_opus":0.009522388252902426,"score_gpt":0.2632923925961803,"score_spread":0.2537700043432779,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2899016542","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99699944,0.000050778002,4.1040298e-7,0.0003635213,0.000090006295,0.00093648024,0.000107873384,0.00000894878,0.0014425243],"genre_scores_gemma":[0.99943125,0.000036895133,5.60157e-7,0.00036209854,0.000036010104,0.00007055304,0.000012099584,0.000012739005,0.000037803442],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987809,0.0001050524,0.00036570049,0.00026167426,0.00021520411,0.0002714835],"domain_scores_gemma":[0.99883497,0.0002575165,0.00017680372,0.00032955178,0.00013939042,0.00026174085],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012455379,0.00018137587,0.00036851005,0.00017500935,0.00010639214,0.000018831923,0.00015903257,0.000049378446,0.00023902487],"category_scores_gemma":[0.0006709388,0.00012325913,0.00009287169,0.00044726217,0.0001736366,0.00015835452,0.0001836203,0.0002169255,0.0000028761738],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045795523,0.000584256,0.99800897,0.000073557334,0.00002983281,0.00004804125,0.00016275188,0.00005265952,0.0001056548,0.00006894304,0.0003206589,0.00008673596],"study_design_scores_gemma":[0.0014517969,0.00094910717,0.99667805,0.0002582001,0.00006499007,0.000010177711,0.0000867556,0.000043020147,0.000073921816,0.00022628612,0.00003192925,0.00012573137],"about_ca_topic_score_codex":0.9300706,"about_ca_topic_score_gemma":0.9894907,"teacher_disagreement_score":0.059420064,"about_ca_system_score_codex":0.0005266083,"about_ca_system_score_gemma":0.0038237385,"threshold_uncertainty_score":0.6783148},"labels":[],"label_agreement":null},{"id":"W2899481272","doi":"10.1093/ofid/ofy210.1271","title":"1440. Potential Impact of Routine Use of 13-Valent Pneumococcal Conjugate Vaccine on Hospitalizations for Pneumonia among Older Adults in Canada","year":2018,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Pfizer (Canada)","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Pneumococcal pneumonia; Pneumococcal disease; Pneumonia; Population; Herd immunity; Incidence (geometry); Pediatrics; Demography; Streptococcus pneumoniae; Internal medicine; Environmental health","score_opus":0.008444416230304447,"score_gpt":0.2761568549841697,"score_spread":0.26771243875386525,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2899481272","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99575573,0.000022308219,0.0000792162,0.00025817458,0.00035510518,0.0023236037,0.00078707864,0.000032470587,0.0003862916],"genre_scores_gemma":[0.99916565,0.000023086186,0.000004769034,0.00024539945,0.000080389145,0.00020085952,0.0001442182,0.00004743144,0.00008822136],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99821806,0.000067460554,0.0006565364,0.00037384676,0.00024577676,0.00043829426],"domain_scores_gemma":[0.99829733,0.000115380244,0.00034453132,0.00044966608,0.00048826402,0.00030481463],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007475565,0.00028360804,0.0006252013,0.00025492496,0.00018137901,0.000040581515,0.00016791599,0.00008868791,0.00018317274],"category_scores_gemma":[0.00029278616,0.00023211613,0.00028814285,0.00043560448,0.000117797346,0.00029865786,0.00011939612,0.00012283114,0.0000043966097],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004772906,0.0012944209,0.9923933,0.000109283246,0.00022552934,0.000017265305,0.00005740907,0.0012440187,0.0022116771,0.00007852146,0.0014812707,0.00041002777],"study_design_scores_gemma":[0.004904185,0.0028636192,0.98827726,0.0005021102,0.00024227433,0.00001759873,0.00008406283,0.001425858,0.0012619862,0.000044682434,0.00014580271,0.0002305385],"about_ca_topic_score_codex":0.45737496,"about_ca_topic_score_gemma":0.57645255,"teacher_disagreement_score":0.11907758,"about_ca_system_score_codex":0.0004849922,"about_ca_system_score_gemma":0.0013540207,"threshold_uncertainty_score":0.94654214},"labels":[],"label_agreement":null},{"id":"W2899928858","doi":"10.6000/1929-4247.2018.07.04.9","title":"Effect of Nutritional Status and Associated Factors on Pneumonia Treatment Outcome among Under-Five Children at St. Paul’s Hospital Millennium Medical College, Addis Ababa, Ethiopia","year":2018,"lang":"en","type":"article","venue":"International Journal of Child Health and Nutrition","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumonia; Pediatrics; Family medicine; Intensive care medicine; Internal medicine","score_opus":0.009924931419236225,"score_gpt":0.3193439642651554,"score_spread":0.30941903284591915,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2899928858","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9820808,0.0007911624,0.000008941669,0.015134895,0.0006478156,0.0004949979,0.0007469626,0.000015253146,0.000079142286],"genre_scores_gemma":[0.9931486,0.0046349,0.000007919032,0.0012246595,0.000664091,0.000011769693,0.00026484972,0.000016059132,0.000027107666],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978392,0.000209103,0.00071551115,0.00020138433,0.00078422687,0.00025053835],"domain_scores_gemma":[0.997941,0.00035756742,0.000576029,0.00007497616,0.0004289027,0.0006214837],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031540063,0.00021136456,0.00053712993,0.00037677895,0.00023453079,0.000016949201,0.00007431891,0.00020541369,0.00007081129],"category_scores_gemma":[0.0003125448,0.00015224825,0.00018761397,0.000104245366,0.0002567832,0.00012556897,0.000030565006,0.0003639906,0.0000019681188],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016433566,0.0018812391,0.9915201,0.00010465593,0.0007073696,0.00005759184,0.00035298642,6.504969e-7,0.00007935461,0.00016868023,0.00211378,0.0013702102],"study_design_scores_gemma":[0.010792912,0.022129757,0.9619966,0.0013359328,0.00010114265,0.0005221374,0.000105852116,0.000016942957,0.0005048043,0.000064005115,0.0023041854,0.00012571117],"about_ca_topic_score_codex":0.00006997813,"about_ca_topic_score_gemma":0.000089178975,"teacher_disagreement_score":0.029523509,"about_ca_system_score_codex":0.0005887615,"about_ca_system_score_gemma":0.00021226202,"threshold_uncertainty_score":0.6208503},"labels":[],"label_agreement":null},{"id":"W2900018804","doi":"10.4269/ajtmh.18-0344","title":"Handheld Point-of-Care Lactate Measurement at Admission Predicts Mortality in Ugandan Children Hospitalized with Pneumonia: A Prospective Cohort Study","year":2018,"lang":"en","type":"article","venue":"American Journal of Tropical Medicine and Hygiene","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Hospital Edmonton; University of Alberta","funders":"School of Medicine, Indiana University; Grand Challenges Canada; University of Alberta","keywords":"Medicine; Prospective cohort study; Pneumonia; Cohort; Cohort study; Emergency medicine; Point of care; Point-of-care testing; Intensive care medicine; Internal medicine; Nursing; Pathology","score_opus":0.013455884014477606,"score_gpt":0.28784707828228684,"score_spread":0.2743911942678092,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2900018804","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99715364,0.00025085488,0.00007089394,0.0013416915,0.000102128455,0.0007743299,0.0000029948137,0.000013266902,0.0002902149],"genre_scores_gemma":[0.9992374,0.00013436539,0.00006796557,0.0002241823,0.0002924303,0.000014741366,0.0000013047627,0.000017006849,0.000010604277],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978571,0.00013758977,0.00065714994,0.0002646905,0.00084839266,0.00023505681],"domain_scores_gemma":[0.9981123,0.000037354694,0.000481184,0.00022852834,0.00075427984,0.00038630783],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003298839,0.00020775248,0.0009996028,0.0002609469,0.00010048149,0.000006153578,0.00008725043,0.0000414997,0.000039843886],"category_scores_gemma":[0.0003195663,0.00011686642,0.000078731595,0.00042316344,0.0008719834,0.00008081614,0.00004262018,0.00032042878,8.585693e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013868897,0.0005523913,0.9896235,0.00003146567,0.00043436472,0.00011980658,0.0021314255,8.6863304e-7,0.0037053237,0.000002927192,0.000038749844,0.0019722972],"study_design_scores_gemma":[0.0067564407,0.04980385,0.9391408,0.00074374385,0.0006865393,0.00037503388,0.0015613374,0.0000038644553,0.0007066766,0.00001069045,0.00010188732,0.000109164386],"about_ca_topic_score_codex":0.00019263482,"about_ca_topic_score_gemma":0.00020215365,"teacher_disagreement_score":0.05048272,"about_ca_system_score_codex":0.00019200586,"about_ca_system_score_gemma":0.00019683618,"threshold_uncertainty_score":0.47656742},"labels":[],"label_agreement":null},{"id":"W2900046053","doi":"10.1007/s40121-018-0221-2","title":"Response to McGirr et al.'s Comment on “Clinical and Economic Impact of a Potential Switch from 13-Valent to 10-Valent Pneumococcal Conjugate Infant Vaccination in Canada”","year":2018,"lang":"en","type":"letter","venue":"Infectious Diseases and Therapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Pfizer (Canada); University of Calgary","funders":"Pfizer","keywords":"Medicine; Vaccination; Pneumococcal conjugate vaccine; Conjugate; Pediatrics; Streptococcus pneumoniae; Immunology; Microbiology","score_opus":0.016873373426523636,"score_gpt":0.3271682504236845,"score_spread":0.3102948769971609,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2900046053","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7636923,0.0001346929,0.0000055540504,0.23368579,0.0005032102,0.0010365549,0.00087648164,0.000025509773,0.00003988198],"genre_scores_gemma":[0.6411906,0.0007326721,0.0000010813055,0.35749632,0.00036608588,0.0000926137,0.00006509236,0.00003645121,0.000019081963],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9975722,0.00047804526,0.0007078029,0.00062542915,0.00026538712,0.0003511557],"domain_scores_gemma":[0.9983778,0.0004175088,0.00022536785,0.00042934914,0.00010404925,0.0004459085],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003146497,0.00041995742,0.00083279144,0.00038833532,0.00009909977,0.000048560654,0.00008748411,0.00023550398,0.00028416206],"category_scores_gemma":[0.00008000867,0.00033569106,0.00026747707,0.00010554825,0.00005987377,0.000050487302,0.000069645575,0.00055367284,0.00001947811],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0061838753,0.00048793515,0.45230007,0.000042606065,0.0007986607,0.00027553615,0.00012193369,0.00034293937,0.0014904886,0.000001976182,0.5344531,0.0035008674],"study_design_scores_gemma":[0.0033330582,0.0045289844,0.69068265,0.00016446559,0.000091603724,0.000026132755,0.000007834871,0.000073251445,0.000032486772,0.00002852849,0.30076662,0.0002643594],"about_ca_topic_score_codex":0.33662197,"about_ca_topic_score_gemma":0.086503856,"teacher_disagreement_score":0.2501181,"about_ca_system_score_codex":0.00091759197,"about_ca_system_score_gemma":0.0015758633,"threshold_uncertainty_score":0.9999095},"labels":[],"label_agreement":null},{"id":"W2900214530","doi":"10.1093/ofid/ofy210.1298","title":"1468. PCV13 Serotype Trends Over Time in Pneumococcal Community Acquired Pneumonia: Which Method(s) Work Best?","year":2018,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Saint John Regional Hospital; McGill University; Université de Sherbrooke; McMaster University; Mount Sinai Hospital; Public Health Ontario; University of British Columbia; Ottawa Hospital; Izaak Walton Killam Health Centre; Centre hospitalier universitaire de Québec; Nova Scotia Health Authority; Dalhousie University","funders":"","keywords":"Medicine; Serotype; Pneumococcal disease; Herd immunity; Pneumonia; Pneumococcal conjugate vaccine; Pneumococcal pneumonia; Streptococcus pneumoniae; Community-acquired pneumonia; Sputum; Immunology; Internal medicine; Pediatrics; Vaccination; Antibiotics; Microbiology; Pathology; Tuberculosis","score_opus":0.023077574870541174,"score_gpt":0.34534835727119534,"score_spread":0.32227078240065415,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2900214530","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9109496,0.00007650396,0.00005736687,0.001932366,0.00053867843,0.0009383285,0.00006495352,0.00030097298,0.08514127],"genre_scores_gemma":[0.99260247,0.000021384803,0.000044396034,0.0021155477,0.00026251507,0.00029448155,0.000099902674,0.00008931516,0.00446998],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9970048,0.0007689397,0.0005699013,0.0005329261,0.0003334868,0.00078991434],"domain_scores_gemma":[0.9975698,0.00029820716,0.00018804835,0.0011006112,0.0002946201,0.0005487054],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00051715015,0.0004621485,0.00080981845,0.0005421128,0.0009969233,0.00024494677,0.0005150555,0.00029737738,0.0025112056],"category_scores_gemma":[0.00037523542,0.00041118206,0.00025361596,0.0023248193,0.00027950612,0.00057024154,0.0006700036,0.0005979873,0.0012052319],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031975453,0.0027853393,0.96893674,0.000045066143,0.00022387227,0.00004881677,0.00025983073,0.000035381363,0.010234947,0.00016079895,0.004836755,0.012112674],"study_design_scores_gemma":[0.0030924438,0.0020208198,0.96635956,0.0003182493,0.00036864652,0.000117802476,0.00013617046,0.0002061579,0.00038231452,0.0007183331,0.025731608,0.00054791814],"about_ca_topic_score_codex":0.0012723334,"about_ca_topic_score_gemma":0.0030173839,"teacher_disagreement_score":0.08165292,"about_ca_system_score_codex":0.0003199024,"about_ca_system_score_gemma":0.00033574086,"threshold_uncertainty_score":0.999834},"labels":[],"label_agreement":null},{"id":"W2900307469","doi":"10.1007/s40121-018-0220-3","title":"Comment on: ‘Clinical and Economic Impact of a Potential Switch from 13-Valent to 10-Valent Pneumococcal Conjugate Infant Vaccination in Canada’, Wilson et al., 22 June 2018","year":2018,"lang":"en","type":"letter","venue":"Infectious Diseases and Therapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"GlaxoSmithKline (Canada)","funders":"GlaxoSmithKline","keywords":"Medicine; Vaccination; Pneumococcal conjugate vaccine; Pneumococcal vaccination; Conjugate; Pediatrics; Immunology; Streptococcus pneumoniae; Microbiology","score_opus":0.016083295833730703,"score_gpt":0.31537676560090233,"score_spread":0.29929346976717164,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2900307469","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8016302,0.00043946027,0.0000055246865,0.19497558,0.0010580355,0.0009495505,0.00082253193,0.000029637682,0.00008943937],"genre_scores_gemma":[0.6856624,0.0034866733,0.0000011846872,0.30965206,0.0008628558,0.00007962771,0.00017677281,0.000045558954,0.00003288252],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.99770814,0.00026869742,0.0007588493,0.000627612,0.00027219468,0.00036448942],"domain_scores_gemma":[0.9985943,0.00022588647,0.0003123002,0.00042125225,0.00009382342,0.0003524408],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00018900061,0.00045623153,0.0009245644,0.00028112868,0.000104330975,0.000052330262,0.00008735649,0.00027579386,0.00045976997],"category_scores_gemma":[0.000032391497,0.00035921895,0.00030905544,0.000086935346,0.00009751575,0.00006945704,0.00006217115,0.00065623026,0.00001578645],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00062400766,0.00036750326,0.37559602,0.00004826193,0.0007050854,0.00013226316,0.000045607976,0.00010344239,0.0002225355,0.0000024504718,0.61984867,0.0023041682],"study_design_scores_gemma":[0.0039295238,0.0029167822,0.6225132,0.00018732899,0.00015502774,0.000034541255,0.0000069618845,0.00015509114,0.000021489624,0.00007781106,0.3696983,0.00030399783],"about_ca_topic_score_codex":0.34450436,"about_ca_topic_score_gemma":0.107987724,"teacher_disagreement_score":0.25015038,"about_ca_system_score_codex":0.0007850062,"about_ca_system_score_gemma":0.0015020717,"threshold_uncertainty_score":0.999886},"labels":[],"label_agreement":null},{"id":"W2901699313","doi":"10.3389/fimmu.2018.02674","title":"Protection Against Invasive Infections in Children Caused by Encapsulated Bacteria","year":2018,"lang":"en","type":"review","venue":"Frontiers in Immunology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Children's Hospital","funders":"","keywords":"Streptococcus pneumoniae; Microbiology; Streptococcus agalactiae; Streptococcus; Neisseria meningitidis; Bacterial capsule; Virulence; Haemophilus influenzae; Meningitis; Bacteria; Streptococcus suis; Biology; Bacteremia; Virulence factor; Complement system; Immunology; Medicine; Antibody; Antibiotics","score_opus":0.01683234162064466,"score_gpt":0.2704066845675655,"score_spread":0.2535743429469208,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2901699313","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.025112342,0.96747684,0.00013284979,0.00006519568,0.0032523384,0.0033574137,0.00007698358,0.00014811283,0.0003779495],"genre_scores_gemma":[0.00048300964,0.9972463,0.000044607557,0.00008558829,0.00017355417,0.00089001,0.0006503581,0.00007960162,0.00034693273],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9973255,0.0005331914,0.00090995885,0.00061115343,0.00010204249,0.0005181705],"domain_scores_gemma":[0.9988792,0.000038262908,0.000379167,0.0005510366,0.00007628115,0.00007608132],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00020992347,0.00049259583,0.0018391242,0.0016704459,0.00012771336,0.00002080136,0.0001844485,0.0013475292,0.00005658889],"category_scores_gemma":[0.00030052493,0.00044393554,0.00031326638,0.0013091,0.00033202942,0.00010560553,0.00008212357,0.0014532356,0.00012519496],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010363921,0.0026458781,0.05300165,0.006027631,0.005538097,0.00016700526,0.0005354686,0.0000039907154,0.0062711863,0.000015498292,0.032778133,0.89291185],"study_design_scores_gemma":[0.0014892909,0.00054766785,0.0049706656,0.0052281055,0.00039306126,0.0003859688,0.0000248847,0.000003157632,0.000048098853,0.000020827172,0.98644125,0.00044701845],"about_ca_topic_score_codex":0.00014435741,"about_ca_topic_score_gemma":0.00012435355,"teacher_disagreement_score":0.9536631,"about_ca_system_score_codex":0.0009417907,"about_ca_system_score_gemma":0.00074446044,"threshold_uncertainty_score":0.9999489},"labels":[],"label_agreement":null},{"id":"W2901749333","doi":"10.1007/s40121-018-0222-1","title":"Re-Analysis of Modeling a Switch from a 13-Valent to 10-Valent Pneumococcal Conjugate Vaccine in Canada: Leveraging Real-World Experience from Belgium","year":2018,"lang":"en","type":"letter","venue":"Infectious Diseases and Therapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer","keywords":"Pneumococcal conjugate vaccine; Medicine; Conjugate; Pneumococcal disease; Conjugate vaccine; Streptococcus pneumoniae; Virology; Microbiology; Immunology; Immunization","score_opus":0.0256387247267933,"score_gpt":0.28388874729272034,"score_spread":0.25825002256592705,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2901749333","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97561,0.0011701362,0.0001001928,0.020780627,0.0005374523,0.00072276377,0.00079644914,0.00007372028,0.00020866588],"genre_scores_gemma":[0.9162562,0.0015217664,0.00000525905,0.08019672,0.0012800851,0.00021849795,0.00034974382,0.00006668001,0.000105041334],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99695003,0.00015816843,0.00088761875,0.0009294831,0.00054912467,0.0005255886],"domain_scores_gemma":[0.9981134,0.0002394394,0.00029897815,0.0007552287,0.00023960134,0.00035336948],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000083360865,0.0005556056,0.0015025765,0.000905166,0.00017025067,0.00005060667,0.00017384914,0.00023863759,0.0007107884],"category_scores_gemma":[0.0000402151,0.00047440635,0.00042129288,0.0010064413,0.00005572905,0.00007931521,0.000085052685,0.0006303379,0.0000064025976],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004165358,0.00033635387,0.9686438,0.00009160893,0.004335605,0.00051676953,0.0013000534,0.003048397,0.0020590231,0.0000010097277,0.018165994,0.0010848792],"study_design_scores_gemma":[0.005445951,0.0007669027,0.87322074,0.0010357634,0.0058592255,0.000009737409,0.00043579016,0.017943086,0.0003014922,0.00029778274,0.09317461,0.0015089391],"about_ca_topic_score_codex":0.8823641,"about_ca_topic_score_gemma":0.78536147,"teacher_disagreement_score":0.09700265,"about_ca_system_score_codex":0.0007054507,"about_ca_system_score_gemma":0.000911478,"threshold_uncertainty_score":0.99977076},"labels":[],"label_agreement":null},{"id":"W2901989937","doi":"10.1016/s2214-109x(18)30408-x","title":"Global, regional, and national estimates of pneumonia morbidity and mortality in children younger than 5 years between 2000 and 2015: a systematic analysis","year":2018,"lang":"en","type":"review","venue":"The Lancet Global Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":755,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Global Health Research","funders":"European Federation of Pharmaceutical Industries and Associations; Wellcome Trust; Bill and Melinda Gates Foundation","keywords":"Medicine; Pneumonia; Incidence (geometry); Poisson regression; Verbal autopsy; Child mortality; Pediatrics; Global health; Demography; Epidemiology; Developing country; Mortality rate; Public health; Environmental health; Cause of death; Population; Disease; Internal medicine; Pathology","score_opus":0.09322731423787771,"score_gpt":0.4407923697532865,"score_spread":0.3475650555154088,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2901989937","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.13510151,0.86155945,0.00000610412,0.0005974889,0.00004162957,0.0012309401,0.0013549578,0.000027116024,0.00008080791],"genre_scores_gemma":[0.04783,0.95133775,0.000044095872,0.0003239892,0.0002624301,0.00004278295,0.00014149102,0.000010893924,0.0000065889444],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99782383,0.0003762948,0.0007344533,0.0003794908,0.000384938,0.0003010127],"domain_scores_gemma":[0.99863535,0.00015055542,0.00055489474,0.00038585535,0.00008170185,0.00019162065],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012636144,0.00027938545,0.0027008478,0.00012942756,0.00010670803,0.000028108068,0.00013058401,0.0001832646,0.000003145319],"category_scores_gemma":[0.00010343469,0.00017852738,0.00016465568,0.00088516594,0.00033580072,0.000056887835,0.00008829736,0.00019584494,0.0000033878162],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000073759893,0.000055339067,0.9590209,0.035545703,0.002010716,0.0000028626998,0.00004285004,8.3215264e-7,4.17141e-8,0.00023854234,0.0006834194,0.0023914042],"study_design_scores_gemma":[0.00029071607,0.00010327931,0.981626,0.011229358,0.0033897168,0.00025052094,0.0000074585764,0.000020615795,5.3911493e-9,0.00040704975,0.0025448534,0.00013047324],"about_ca_topic_score_codex":0.0023906033,"about_ca_topic_score_gemma":0.000798163,"teacher_disagreement_score":0.08977828,"about_ca_system_score_codex":0.00039592208,"about_ca_system_score_gemma":0.00074627664,"threshold_uncertainty_score":0.7280135},"labels":[],"label_agreement":null},{"id":"W2902484528","doi":"10.1093/ofid/ofy210.2054","title":"2401. Risk Factors for Antimicrobial Resistance in Invasive Pneumococcal disease (IPD) in Toronto, Canada, 2012–2017","year":2018,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Sinai Health System; Mount Sinai Hospital; University of Toronto","funders":"","keywords":"Medicine; Levofloxacin; Penicillin; Antimicrobial stewardship; Meningitis; Internal medicine; Odds ratio; Antimicrobial; Streptococcus pneumoniae; Antibiotic resistance; Broth microdilution; Pediatrics; Antibiotics; Microbiology","score_opus":0.013200602112205688,"score_gpt":0.2874529731692001,"score_spread":0.2742523710569944,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2902484528","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9821248,0.00032135015,0.000024368346,0.0011410144,0.00085820653,0.002461984,0.0012364417,0.00006422606,0.01176759],"genre_scores_gemma":[0.996893,0.00015384516,0.000009973582,0.0012116882,0.00020279082,0.00036745775,0.0001418656,0.000050180915,0.00096918945],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978911,0.00012726223,0.00047491543,0.0005933592,0.00021047285,0.0007028621],"domain_scores_gemma":[0.9982356,0.00025842903,0.0002073058,0.0005415214,0.00018000408,0.00057714374],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00013275324,0.00034042555,0.00053805753,0.00015226744,0.0004800597,0.00011367464,0.00029428478,0.00011494221,0.0003138433],"category_scores_gemma":[0.0009237388,0.00030792592,0.00017247484,0.00027755226,0.00019822958,0.0006361295,0.00017318579,0.00019553339,0.000018552646],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048716986,0.00072151725,0.9725072,0.000117447446,0.00006736003,0.00009081142,0.000110896035,0.000015642392,0.00090471574,0.000352223,0.02448582,0.00013920825],"study_design_scores_gemma":[0.0032241552,0.00032435844,0.96510655,0.0003066538,0.0001607203,0.0000064553024,0.00029092425,0.000021882857,0.00030345467,0.00041971268,0.029435072,0.00040005828],"about_ca_topic_score_codex":0.36881053,"about_ca_topic_score_gemma":0.98936075,"teacher_disagreement_score":0.6205502,"about_ca_system_score_codex":0.0014300597,"about_ca_system_score_gemma":0.0024524208,"threshold_uncertainty_score":0.9999373},"labels":[],"label_agreement":null},{"id":"W2902565860","doi":"10.3138/jammi.2018-0025","title":"Epidemiology of invasive pneumococcal disease in the city of Kenora, Ontario, Canada, and surrounding area (2010-2016)","year":2018,"lang":"en","type":"article","venue":"Journal of the Association of Medical Microbiology and Infectious Disease Canada","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Lakehead University; NOSM University","funders":"","keywords":"Epidemiology; Incidence (geometry); Streptococcus pneumoniae; Serotype; Pneumococcal disease; Medicine; Pneumococcal polysaccharide vaccine; Population; Pneumococcal infections; Vaccination; Pneumococcal conjugate vaccine; Pediatrics; Indigenous; Environmental health; Immunology; Internal medicine; Biology; Microbiology","score_opus":0.013438862298110065,"score_gpt":0.24541586708266672,"score_spread":0.23197700478455666,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2902565860","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.990301,0.00034982886,0.0000056764898,0.008400801,0.00068552204,0.00013503162,0.00006748708,0.0000010086488,0.000053604654],"genre_scores_gemma":[0.997523,0.00010767705,0.0000012612096,0.0021928877,0.00010043172,0.0000020030188,0.000004351135,0.0000035413743,0.00006482559],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982605,0.00056606886,0.000666491,0.00010163102,0.00022724332,0.00017808493],"domain_scores_gemma":[0.99677473,0.001515579,0.0009741488,0.00013401147,0.0003298073,0.00027173047],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014693392,0.00010009292,0.00047554442,0.00007635284,0.00010250588,0.0000013141924,0.0001404712,0.00013312657,0.00007735504],"category_scores_gemma":[0.0070449733,0.00005780704,0.00009390121,0.000132323,0.00036594254,0.000033515462,0.000050246046,0.0004209739,4.613287e-8],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009781243,0.00009554017,0.9942718,0.000060446557,0.00015237824,0.000018411854,0.000103716775,0.000003998964,0.0017117033,0.00006827526,0.0033736546,0.00004223517],"study_design_scores_gemma":[0.00088586827,0.00017830158,0.99546665,0.00021493388,0.00020350724,0.00009052477,0.000059916718,0.0000050201647,0.0001117138,0.0002257715,0.0025081234,0.000049654693],"about_ca_topic_score_codex":0.9087479,"about_ca_topic_score_gemma":0.99570644,"teacher_disagreement_score":0.08695856,"about_ca_system_score_codex":0.00058765174,"about_ca_system_score_gemma":0.0095591,"threshold_uncertainty_score":0.9960558},"labels":[],"label_agreement":null},{"id":"W2902803629","doi":"10.1186/s12879-018-3531-9","title":"Epidemiology of invasive pneumococcal disease in indigenous and non-indigenous adults in northwestern Ontario, Canada, 2006–2015","year":2018,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"NOSM University; Thunder Bay Regional Health Sciences Centre; Dalhousie University","funders":"","keywords":"Epidemiology; Incidence (geometry); Medicine; Indigenous; Population; Demography; Pneumococcal disease; Pneumococcal infections; Pediatrics; Streptococcus pneumoniae; Environmental health; Internal medicine; Biology","score_opus":0.011875871953099646,"score_gpt":0.2631440317925218,"score_spread":0.2512681598394222,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2902803629","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977396,0.0005146466,0.000016449609,0.000049274095,0.00029105233,0.0010553332,0.00015478948,0.000037277598,0.00014159008],"genre_scores_gemma":[0.99889356,0.000046117668,0.0000056598747,0.00056809164,0.0001692159,0.0001448703,0.000059983064,0.00002815078,0.000084375],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99794203,0.00018327414,0.00064748817,0.0004666289,0.00017730928,0.00058329746],"domain_scores_gemma":[0.99827605,0.0003939223,0.0002114187,0.00037374476,0.00016887645,0.0005759769],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00015451075,0.00028588763,0.000682879,0.00042162547,0.00014105711,0.0000046917503,0.000089951165,0.00013527775,0.000059824637],"category_scores_gemma":[0.0003925324,0.00026220724,0.00010745573,0.0003469614,0.00029889887,0.000098446995,0.000067571236,0.00026723716,0.00001156431],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033552083,0.0007882278,0.9952904,0.00029757438,0.000042576103,0.00025976132,0.002521451,0.00013740221,0.00010293603,0.0000027848987,0.000031175365,0.00019021139],"study_design_scores_gemma":[0.0024843456,0.000781192,0.99559015,0.00029755378,0.00011408858,0.00005838658,0.0001252434,0.00002536622,0.00003086034,0.000080576305,0.0001709603,0.00024127365],"about_ca_topic_score_codex":0.9344521,"about_ca_topic_score_gemma":0.9989834,"teacher_disagreement_score":0.06453128,"about_ca_system_score_codex":0.0007523068,"about_ca_system_score_gemma":0.006185294,"threshold_uncertainty_score":0.999983},"labels":[],"label_agreement":null},{"id":"W2903287428","doi":"10.1016/j.jmgm.2018.11.009","title":"Inhibition mechanism of L,D-transpeptidase 5 in presence of the β-lactams using ONIOM method","year":2018,"lang":"en","type":"article","venue":"Journal of Molecular Graphics and Modelling","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council Canada; Inyuvesi Yakwazulu-Natali; National Research Foundation","keywords":"ONIOM; Peptidoglycan; Acylation; Chemistry; QM/MM; Stereochemistry; Residue (chemistry); Catalysis; Enzyme; Molecular mechanics; Imipenem; Lactam; Computational chemistry; Antibiotics; Molecular dynamics; Biochemistry; Antibiotic resistance","score_opus":0.032958062692836736,"score_gpt":0.30265052991851665,"score_spread":0.2696924672256799,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2903287428","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.591238,0.000104058454,0.40844738,0.0000845157,0.00004427169,0.000053915668,9.720359e-7,7.861367e-7,0.000026073298],"genre_scores_gemma":[0.994174,0.00014153557,0.005548124,0.00009778037,0.000029574114,3.2670545e-7,1.14630126e-7,0.000007450121,0.0000010630959],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991696,0.00008212853,0.00037209466,0.00007047081,0.00022143303,0.000084267194],"domain_scores_gemma":[0.9992734,0.000029152894,0.00027277286,0.00010460106,0.00027038253,0.000049699294],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00051426404,0.00006652497,0.00020694923,0.00024115435,0.000045030753,0.000004466547,0.000041033683,0.00007293918,0.0000014983676],"category_scores_gemma":[0.000025169657,0.000045082546,0.00014225264,0.00028570235,0.000100637226,0.00005364297,0.000013599033,0.00021949095,2.082897e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037664035,0.00007786412,0.0006277912,0.00006545266,0.000041820378,0.000019787807,0.0003981101,0.011529443,0.98191726,0.0051256544,2.8549763e-7,0.0001588797],"study_design_scores_gemma":[0.0010014082,0.00044883578,0.0003621774,0.0010719952,0.00022881808,0.00032223156,0.00011971357,0.26236784,0.7199155,0.014062995,0.000022123371,0.0000763826],"about_ca_topic_score_codex":0.000039764625,"about_ca_topic_score_gemma":0.000007981822,"teacher_disagreement_score":0.402936,"about_ca_system_score_codex":0.000009748928,"about_ca_system_score_gemma":0.00007146937,"threshold_uncertainty_score":0.18384129},"labels":[],"label_agreement":null},{"id":"W2903809735","doi":"10.14745/ccdr.v44i12a02","title":"Outbreak of invasive Streptococcus pneumoniae among an inner-city population in Victoria, British Columbia, 2016–2017","year":2018,"lang":"en","type":"article","venue":"Canada Communicable Disease Report","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Island Health; University of British Columbia","funders":"British Columbia Centre for Disease Control","keywords":"Outbreak; Population; Public health; Medicine; Vaccination; Epidemiology; Environmental health; Serotype; Outreach; Streptococcus pneumoniae; Virology; Internal medicine; Biology; Economic growth","score_opus":0.015032545789666844,"score_gpt":0.26397801106765884,"score_spread":0.248945465277992,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2903809735","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99527395,0.00011892667,0.000001776693,0.00014160908,0.00038866713,0.0006415472,0.00013009658,0.00004972885,0.0032536946],"genre_scores_gemma":[0.99792445,0.00004735088,0.000011808051,0.00024015048,0.00014325579,0.00008450359,0.0003723521,0.00002974781,0.0011463566],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9979147,0.00017301996,0.000776309,0.00035319108,0.00043792557,0.00034490204],"domain_scores_gemma":[0.9966868,0.00007535672,0.00041212494,0.0016988058,0.000492465,0.0006344535],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003265815,0.00015501249,0.0004992506,0.00008768359,0.00032196575,0.000068902795,0.00026094302,0.0001189024,0.000193413],"category_scores_gemma":[0.00067661924,0.00021898579,0.00010086902,0.00035977535,0.00027716352,0.0002535326,0.00015187405,0.00031090455,0.000001474118],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015732598,0.00029830582,0.9927818,0.000075478296,0.000052873256,0.0019857313,0.000039998286,0.00001310288,0.0009390856,0.0000025689333,0.0033359707,0.0004593378],"study_design_scores_gemma":[0.000599373,0.000112597554,0.986424,0.0004311072,0.00010253422,0.00014699527,0.00014204327,0.00007072787,0.000046953843,0.00007204847,0.011636654,0.00021491305],"about_ca_topic_score_codex":0.9683935,"about_ca_topic_score_gemma":0.9980443,"teacher_disagreement_score":0.029650804,"about_ca_system_score_codex":0.00050876226,"about_ca_system_score_gemma":0.0037767314,"threshold_uncertainty_score":0.89299816},"labels":[],"label_agreement":null},{"id":"W2906691128","doi":"10.1080/17476348.2019.1562339","title":"The burden of community-acquired bacterial pneumonia in the era of antibiotic resistance","year":2018,"lang":"en","type":"review","venue":"Expert Review of Respiratory Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":146,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Antibiotic resistance; Intensive care medicine; Streptococcus pneumoniae; Pneumonia; Incidence (geometry); Community-acquired pneumonia; Disease burden; Population; Burden of disease; Disease; Antibiotics; Bacterial pneumonia; Environmental health; Internal medicine","score_opus":0.06665116740664044,"score_gpt":0.3962645814464572,"score_spread":0.32961341403981675,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2906691128","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00030902692,0.99228066,0.0000017184265,0.0022732539,0.00078838185,0.0024570543,0.000034008623,0.000018644552,0.0018372721],"genre_scores_gemma":[0.00021919255,0.9963792,0.000016177832,0.0015513151,0.0015265755,0.00011006415,0.000042154443,0.00006423663,0.00009110889],"study_design_codex":"systematic_review","study_design_gemma":"not_applicable","domain_scores_codex":[0.99091023,0.0039962595,0.0034103228,0.00032480867,0.0009627509,0.00039559917],"domain_scores_gemma":[0.9921494,0.0020136642,0.0024349906,0.002731417,0.0005401345,0.00013039321],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0059824046,0.00062368094,0.0047761365,0.00027583502,0.00025625253,0.00000683532,0.0012897245,0.00035065832,0.000115109346],"category_scores_gemma":[0.002970372,0.00028533264,0.00085283857,0.0014644946,0.0023546207,0.000060166985,0.00015476711,0.0011319212,0.000011478374],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001317954,0.0005409214,0.00002078104,0.47800082,0.00071333005,0.000056770557,0.003450456,5.6078573e-8,0.005209126,0.00021731769,0.05773229,0.45392635],"study_design_scores_gemma":[0.0004743659,0.00080200087,0.00006352247,0.30563676,0.000662532,0.000044867124,0.00029542015,7.8289716e-8,0.00003612446,0.0000039990305,0.6918371,0.00014327497],"about_ca_topic_score_codex":0.00012292195,"about_ca_topic_score_gemma":0.000044066834,"teacher_disagreement_score":0.6341048,"about_ca_system_score_codex":0.00011344368,"about_ca_system_score_gemma":0.0008628259,"threshold_uncertainty_score":0.9999599},"labels":[],"label_agreement":null},{"id":"W2907466891","doi":"10.3138/ptc.2017-51.ep","title":"Effect of Early Mobility as a Physiotherapy Treatment for Pneumonia: A Systematic Review and Meta-Analysis","year":2019,"lang":"en","type":"review","venue":"Physiotherapy Canada","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"West Park Healthcare Centre; Toronto Rehabilitation Institute; London Health Sciences Centre; Western University","funders":"","keywords":"Medicine; Randomized controlled trial; Physical therapy; Pneumonia; Population; Emergency medicine; Internal medicine","score_opus":0.04778736200699064,"score_gpt":0.40863801119713067,"score_spread":0.36085064919014004,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2907466891","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00011798414,0.98478186,0.0000067100755,0.00013819609,0.000058747955,0.014293128,0.00054500793,0.00002563841,0.00003275296],"genre_scores_gemma":[0.00021476511,0.99217683,0.000005508186,0.000797879,0.00004028133,0.0050207432,0.00006529717,0.00009739601,0.0015813075],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99678075,0.00065396423,0.0011177195,0.00071023125,0.0004067327,0.00033060435],"domain_scores_gemma":[0.9963541,0.0010123655,0.00094509707,0.0013378115,0.00014664582,0.0002039758],"candidate_categories":["metaepi_narrow","metaepi_broad"],"consensus_categories":[],"category_scores_codex":[0.0003717859,0.0008653949,0.016002133,0.00026947842,0.00008991382,0.000019396224,0.00017334921,0.00017609767,0.00013980649],"category_scores_gemma":[0.000038981114,0.0004594096,0.0054882052,0.000894,0.00006009088,0.000041298925,0.0000137947845,0.00016373025,0.0000052405803],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021206424,0.000118064236,0.0000022930888,0.7607525,0.23579904,0.000003323735,0.00001344799,7.4015895e-7,0.000040158924,0.0000049894284,0.000049582744,0.0031946492],"study_design_scores_gemma":[0.0006106298,0.0028974905,0.0000035304736,0.019551052,0.89131457,0.000022045038,0.0000016296572,0.000004382241,0.00002126636,0.0000022998493,0.085221484,0.00034961262],"about_ca_topic_score_codex":0.09887983,"about_ca_topic_score_gemma":0.01875571,"teacher_disagreement_score":0.74120146,"about_ca_system_score_codex":0.0005725044,"about_ca_system_score_gemma":0.0016002057,"threshold_uncertainty_score":0.9997858},"labels":[],"label_agreement":null},{"id":"W2909285912","doi":"10.1164/rccm.201804-0646oc","title":"Alveolar Macrophage Apoptosis–associated Bacterial Killing Helps Prevent Murine Pneumonia","year":2019,"lang":"en","type":"article","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Medical Research Council; National Institute for Health and Care Research; British Heart Foundation; Wellcome Trust","keywords":"Microbiology; Apoptosis; Macrophage; Reactive oxygen species; Alveolar macrophage; Biology; Medicine; Immunology; Cell biology; In vitro; Biochemistry","score_opus":0.011278321037911591,"score_gpt":0.29540096790359793,"score_spread":0.28412264686568633,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2909285912","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9932997,0.0017055251,0.00008267416,0.0029458452,0.0010640767,0.00022349287,0.000012146855,0.0000342615,0.00063224725],"genre_scores_gemma":[0.9950742,0.00013746234,0.000063455685,0.0036144785,0.0010008716,0.000005578631,0.0000052252053,0.000038390306,0.000060337916],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9974931,0.00031614935,0.0008434863,0.000301796,0.000616268,0.0004291996],"domain_scores_gemma":[0.9975896,0.0003811782,0.00033812554,0.00027297184,0.00071120186,0.0007069292],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006417558,0.00029186028,0.0010367321,0.00030522826,0.00015453601,0.000023357728,0.00013348198,0.000120810924,0.00044260392],"category_scores_gemma":[0.0009046611,0.00021052416,0.00022631654,0.00040251724,0.00085820263,0.00015876877,0.000051581384,0.0007635936,0.000018547495],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00072012574,0.0004963824,0.10977655,0.00051245984,0.00040571298,0.0005673287,0.001482256,0.00000700354,0.8460171,0.000279594,0.00027688002,0.039458573],"study_design_scores_gemma":[0.024356807,0.14871731,0.43122703,0.008443407,0.0052905525,0.0045810053,0.035811584,0.00007750932,0.052454017,0.00031304496,0.28652024,0.0022074867],"about_ca_topic_score_codex":0.000013865213,"about_ca_topic_score_gemma":0.0000024514736,"teacher_disagreement_score":0.7935631,"about_ca_system_score_codex":0.00013945595,"about_ca_system_score_gemma":0.00022788887,"threshold_uncertainty_score":0.8584926},"labels":[],"label_agreement":null},{"id":"W2912321761","doi":"10.1016/j.vaccine.2018.12.072","title":"Mitigating base-catalysed degradation of periodate-oxidized capsular polysaccharides: Conjugation by reductive amination in acidic media","year":2019,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"","keywords":"Reductive amination; Periodate; Chemistry; Polysaccharide; Sodium periodate; Glycoconjugate; Sodium cyanoborohydride; Aldehyde; Dextran; Bovine serum albumin; Biochemistry; Organic chemistry; Catalysis","score_opus":0.010918926581429799,"score_gpt":0.25201154542375437,"score_spread":0.24109261884232458,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2912321761","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99766386,0.00015206296,0.00016070704,0.001064047,0.00017112559,0.00055604184,0.000026230642,0.000045817644,0.00016013984],"genre_scores_gemma":[0.99895334,0.00003801118,0.00017441579,0.00012501994,0.00005215511,0.000031798045,0.0004251989,0.000020216832,0.00017982408],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987921,0.00008065901,0.00046335495,0.0002603027,0.00023416085,0.00016941788],"domain_scores_gemma":[0.9991636,0.00009786651,0.00024114197,0.00023577728,0.00018722386,0.000074368036],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003023433,0.00014196956,0.00034118866,0.00032832337,0.00004399223,0.000009730795,0.00005749426,0.00011792176,0.00022745607],"category_scores_gemma":[0.00032691355,0.00012828366,0.00006813021,0.0005578146,0.000021728025,0.00024526726,0.000016575204,0.00018205775,0.000041065752],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006024732,0.00012539321,0.052285086,0.000066749264,0.000031053456,0.0000025723334,0.00059862965,0.000010939604,0.94582075,0.000055756656,0.00008597307,0.0008568667],"study_design_scores_gemma":[0.004173484,0.00022841957,0.10559984,0.00022744271,0.0000970598,0.000021244596,0.0016962007,0.0010841211,0.8864848,0.000050355426,0.0001812851,0.00015576828],"about_ca_topic_score_codex":0.00023138167,"about_ca_topic_score_gemma":0.00004904955,"teacher_disagreement_score":0.059335954,"about_ca_system_score_codex":0.00013013737,"about_ca_system_score_gemma":0.00010296623,"threshold_uncertainty_score":0.5231255},"labels":[],"label_agreement":null},{"id":"W2912971785","doi":"10.1016/j.vaccine.2019.01.014","title":"Immunogenicity and safety of the 13-valent pneumococcal conjugate vaccine compared to 23-valent pneumococcal polysaccharide in immunocompetent adults: A systematic review and meta-analysis","year":2019,"lang":"en","type":"review","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Pfizer Canada","keywords":"Immunogenicity; Medicine; Pneumococcal conjugate vaccine; Pneumococcal polysaccharide vaccine; Vaccination; Streptococcus pneumoniae; Internal medicine; Immunization; Pneumococcal infections; Immunology; Immune system; Pneumococcal disease; Biology; Microbiology","score_opus":0.0428566730801301,"score_gpt":0.3205924485496129,"score_spread":0.2777357754694828,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2912971785","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0030054764,0.9800029,0.0000079940755,0.0012615357,0.00015425691,0.015069672,0.00041148099,0.000050303643,0.000036395515],"genre_scores_gemma":[0.010315536,0.98701966,0.000015504438,0.00080013386,0.0000404659,0.001288229,0.00008619639,0.00009054259,0.00034373652],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99210835,0.0012525568,0.0042489218,0.001157432,0.00059755566,0.0006351961],"domain_scores_gemma":[0.99468815,0.00050940353,0.0017600082,0.0023252787,0.00033915052,0.0003779939],"candidate_categories":["metaepi_narrow","metaepi_broad"],"consensus_categories":[],"category_scores_codex":[0.0015738476,0.0011982615,0.016290398,0.0009328828,0.00016942227,0.000042129202,0.000613513,0.0003661093,0.0001776008],"category_scores_gemma":[0.00037208069,0.0006538672,0.004012017,0.0024156452,0.000040017716,0.00009231593,0.0006861361,0.0010426883,0.000058825713],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015450646,0.00047233395,0.0009648543,0.89270014,0.104561456,0.00002837572,0.00012400605,0.0000151661225,0.00037448423,0.000025659489,0.000047703263,0.00053133373],"study_design_scores_gemma":[0.0021222075,0.0003677617,0.010001265,0.111811936,0.8588099,0.0006047105,0.00003950703,0.00003050345,0.000013257144,0.0000021773637,0.015446364,0.00075042056],"about_ca_topic_score_codex":0.00023932973,"about_ca_topic_score_gemma":0.00026219393,"teacher_disagreement_score":0.7808882,"about_ca_system_score_codex":0.00032806635,"about_ca_system_score_gemma":0.00030100628,"threshold_uncertainty_score":0.99959123},"labels":[],"label_agreement":null},{"id":"W2913080128","doi":"10.1164/rccm.201811-2081le","title":"Two Randomized Trials of the Effect of Live Attenuated Influenza Vaccine on Pneumococcal Colonization","year":2019,"lang":"en","type":"letter","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ryerson University; Medical Research Council; Bill and Melinda Gates Foundation","keywords":"Streptococcus pneumoniae; Colonization; Medicine; Pneumonia; Pneumococcal pneumonia; Immunology; Immune system; Pneumococcal infections; Transmission (telecommunications); Pneumococcal disease; Microbiology; Virology; Antibiotics; Biology; Internal medicine","score_opus":0.026103368392999204,"score_gpt":0.3591685987579539,"score_spread":0.3330652303649547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2913080128","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.85574853,0.0037158632,0.000048459027,0.13694106,0.0014441861,0.0016846354,0.00006594009,0.000015847307,0.00033547197],"genre_scores_gemma":[0.8177149,0.00008168361,0.0000083859595,0.17938891,0.0027037617,0.000021220369,0.000010245377,0.00005075332,0.000020104811],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9905568,0.005192574,0.002618883,0.00030033037,0.0010280309,0.00030341398],"domain_scores_gemma":[0.98090535,0.014437305,0.0024698016,0.00048591418,0.0015170382,0.00018458565],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0041181706,0.00046403598,0.0055851117,0.0005637105,0.00009199174,0.000009031804,0.00024083514,0.00035464135,0.00010263243],"category_scores_gemma":[0.026304683,0.00022602169,0.0009825821,0.00055468385,0.0022195184,0.000059189995,0.000052777956,0.0022070378,0.0000031949094],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.3513248,0.0006982815,0.21567824,0.020446906,0.009358036,0.0028146526,0.0056147957,0.00018164077,0.18148802,0.0004202281,0.16524199,0.046732407],"study_design_scores_gemma":[0.45524484,0.17795777,0.017295366,0.025588475,0.033865318,0.0016781043,0.0025642018,0.000027888218,0.017775403,0.00010777793,0.26672274,0.0011721115],"about_ca_topic_score_codex":0.000029480641,"about_ca_topic_score_gemma":0.0000014979931,"teacher_disagreement_score":0.19838288,"about_ca_system_score_codex":0.00009755903,"about_ca_system_score_gemma":0.0004000345,"threshold_uncertainty_score":0.9818972},"labels":[],"label_agreement":null},{"id":"W2913714503","doi":"10.33321/cdi.2019.43.1","title":"Invasive Pneumococcal Disease Surveillance, 1 October to 31 December 2017","year":2019,"lang":"en","type":"article","venue":"Communicable Diseases Intelligence","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Pneumococcal disease; Serotype; Pneumococcal conjugate vaccine; Medicine; Quarter (Canadian coin); Conjugate vaccine; Streptococcus pneumoniae; Pediatrics; Pneumococcal infections; Virology; Immunization; Immunology; Biology; Antibody; Microbiology; Antibiotics; Geography","score_opus":0.02816821753821627,"score_gpt":0.3185216422622413,"score_spread":0.29035342472402503,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2913714503","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96315634,0.001638273,0.00027089528,0.0017797672,0.00060293364,0.0013444559,0.00013435562,0.00024139757,0.030831594],"genre_scores_gemma":[0.99107766,0.0007453562,0.00007543168,0.0032096242,0.00009124278,0.00014754772,0.00008021771,0.000041522522,0.004531377],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981739,0.00014638808,0.00039423868,0.0004539935,0.00032712167,0.00050439074],"domain_scores_gemma":[0.99570036,0.00048605716,0.000087064276,0.0023216011,0.00027276317,0.0011321825],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00013533201,0.00029609728,0.00047864066,0.00018228669,0.00025010403,0.00006753732,0.00066078606,0.000089117086,0.0012561145],"category_scores_gemma":[0.0006945621,0.00025844882,0.0002878765,0.0005017552,0.0001968532,0.00017180089,0.0005275109,0.0003642155,0.005215986],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044099693,0.0010492877,0.97408926,0.0002696231,0.00014899256,0.00016198451,0.0001674308,0.0011454183,0.008223952,0.0008726539,0.011001924,0.0024284688],"study_design_scores_gemma":[0.0005195345,0.00047377392,0.77113104,0.00052007317,0.0001895384,0.000059179303,0.00038641482,0.0006270302,0.0011863315,0.0007059435,0.22346883,0.0007323009],"about_ca_topic_score_codex":0.000041512263,"about_ca_topic_score_gemma":0.00006828225,"teacher_disagreement_score":0.2124669,"about_ca_system_score_codex":0.00013312964,"about_ca_system_score_gemma":0.00054458703,"threshold_uncertainty_score":0.99998677},"labels":[],"label_agreement":null},{"id":"W2916340174","doi":"10.1038/s41467-019-08869-9","title":"A platform for glycoengineering a polyvalent pneumococcal bioconjugate vaccine using E. coli as a host","year":2019,"lang":"en","type":"article","venue":"Nature Communications","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":92,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Concordia University; University of Alberta","funders":"National Institute of Allergy and Infectious Diseases; National Health and Medical Research Council; Medical Research Council; University of Melbourne; National Science Foundation","keywords":"Bioconjugation; Conjugate; Polysaccharide; Microbiology; Streptococcus pneumoniae; Bioprocess; Recombinant DNA; Conjugate vaccine; Chemistry; Biology; Biochemistry; Antibiotics","score_opus":0.02597437973217263,"score_gpt":0.3300880906336203,"score_spread":0.3041137109014477,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2916340174","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9867058,0.001808835,0.00025740388,0.0064321784,0.00044970174,0.0017940758,0.00005456654,0.0001971291,0.0023003118],"genre_scores_gemma":[0.9957283,0.00018204092,0.0021801533,0.0011924924,0.0001105886,0.00014653007,0.000064594045,0.00004085485,0.00035442185],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991046,0.00001969586,0.00027190938,0.0002032603,0.00013223635,0.00026826767],"domain_scores_gemma":[0.99796534,0.0001932369,0.000088537956,0.0014049116,0.00019842552,0.00014954615],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001394399,0.00017282128,0.00027734097,0.00022068025,0.00028200197,0.00002921863,0.0003399709,0.00030598676,0.000045922676],"category_scores_gemma":[0.00014731826,0.0001539733,0.00017798124,0.00037055905,0.000037628517,0.00011468987,0.00016361922,0.00081035163,0.00007884283],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000106095045,0.00038532767,0.012868497,0.00014523252,0.00022497484,0.0000034119205,0.00026266568,0.00010711411,0.97689605,0.008280714,0.00037788603,0.0003420531],"study_design_scores_gemma":[0.006146505,0.0010148254,0.07777195,0.0006010173,0.0005866753,0.0006699411,0.00049159466,0.036904927,0.011919657,0.00019644357,0.86297613,0.0007203367],"about_ca_topic_score_codex":0.000021096563,"about_ca_topic_score_gemma":0.00004027506,"teacher_disagreement_score":0.9649764,"about_ca_system_score_codex":0.00015465557,"about_ca_system_score_gemma":0.00018492053,"threshold_uncertainty_score":0.6278849},"labels":[],"label_agreement":null},{"id":"W2916433178","doi":"10.1093/jac/dkr097","title":"FOCUS 2: a randomized, double-blinded, multicentre, Phase III trial of the efficacy and safety of ceftaroline fosamil versus ceftriaxone in community-acquired pneumonia","year":2011,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":185,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Mount Sinai Hospital","funders":"","keywords":"Ceftriaxone; Medicine; Cephalosporin; Randomized controlled trial; Pneumonia; Antibacterial agent; Internal medicine; Antibiotics; Microbiology; Biology","score_opus":0.048267129144738144,"score_gpt":0.318019933608242,"score_spread":0.26975280446350386,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2916433178","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959503,0.00011098687,0.000081018086,0.0012907332,0.0007149977,0.001463468,0.000012139163,0.000008228842,0.00036813517],"genre_scores_gemma":[0.99802166,0.0011799372,0.0002756333,0.00027405526,0.00019462209,0.000003149121,0.0000015068847,0.000026530273,0.000022905271],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.99741656,0.00047051514,0.0015046876,0.00011901098,0.00026059788,0.00022863274],"domain_scores_gemma":[0.9974807,0.00050095137,0.0012462697,0.00036189533,0.00029238468,0.00011781477],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014356575,0.00022959015,0.0014022818,0.00030609604,0.000115677816,0.000009090671,0.00024517378,0.00018318916,0.00003953611],"category_scores_gemma":[0.0002235552,0.00014689285,0.00051340164,0.0003821964,0.0004931909,0.00011211051,0.00004898858,0.00056199037,5.044789e-7],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.6945734,0.003453434,0.00020517225,0.000045850997,0.00042022546,0.00001030794,0.0020713657,0.0000071560394,0.29762203,0.000012884581,0.00004539707,0.001532811],"study_design_scores_gemma":[0.865582,0.0018876437,0.0009029562,0.0003530392,0.0003751047,0.00012126202,0.00014816043,0.000021073383,0.13006139,0.000016832792,0.0004189708,0.00011157199],"about_ca_topic_score_codex":0.00025112843,"about_ca_topic_score_gemma":0.00006445427,"teacher_disagreement_score":0.17100862,"about_ca_system_score_codex":0.000058292124,"about_ca_system_score_gemma":0.00024424624,"threshold_uncertainty_score":0.59901166},"labels":[],"label_agreement":null},{"id":"W2917904736","doi":"10.1128/aac.02381-18","title":"Gain- and Loss-of-Function Screens Coupled to Next-Generation Sequencing for Antibiotic Mode of Action and Resistance Studies in <i>Streptococcus pneumoniae</i>","year":2019,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Streptococcus pneumoniae; Microbiology; Antibiotic resistance; Antibiotics; Mode of action; Function (biology); Biology; Genetics","score_opus":0.08615772009860971,"score_gpt":0.33919217735304824,"score_spread":0.2530344572544385,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2917904736","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975245,0.00006996212,0.00026098546,0.0012582686,0.00010885103,0.0007321732,0.000012529458,0.000009834656,0.000022886923],"genre_scores_gemma":[0.9967092,0.0014869767,0.00018420622,0.0014064068,0.00005238797,0.0000059330564,0.000008047664,0.000013812306,0.00013299067],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993467,0.000015215276,0.00023419278,0.00022240974,0.00006246006,0.000119074684],"domain_scores_gemma":[0.9996419,0.000027460128,0.00009980823,0.00009835306,0.00009154108,0.000040959552],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009212629,0.0001140791,0.00029675828,0.00010417846,0.00005948695,0.000011619659,0.000017097089,0.000068038775,0.0000029904252],"category_scores_gemma":[0.000013217495,0.00009879118,0.00003324129,0.00011430678,0.000077162425,0.00009234815,0.000011401674,0.000053493466,3.5342686e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001686269,0.000051229876,0.10383963,0.00040279765,0.0000652495,8.9802296e-7,0.0004904235,0.000044150172,0.8938812,0.000028886867,0.0002277191,0.00079916354],"study_design_scores_gemma":[0.012055956,0.0023063188,0.26407772,0.002157098,0.00030250545,0.000052126627,0.0016015008,0.0073660226,0.7049247,0.00019218981,0.0043184604,0.0006454031],"about_ca_topic_score_codex":0.00004008294,"about_ca_topic_score_gemma":0.00013514982,"teacher_disagreement_score":0.18895653,"about_ca_system_score_codex":0.000033077897,"about_ca_system_score_gemma":0.000029648774,"threshold_uncertainty_score":0.40285873},"labels":[],"label_agreement":null},{"id":"W2918088677","doi":"10.1038/s41598-018-38090-5","title":"A Haemophilus sp. dominates the microbiota of sputum from UK adults with non-severe community acquired pneumonia and chronic lung disease","year":2019,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"National Institute for Health and Care Research; Wellcome Trust","keywords":"Sputum; Pneumonia; Lung disease; Haemophilus; Medicine; Community-acquired pneumonia; Lung; Disease; Pulmonary disease; Lung infection; Microbiology; Haemophilus influenzae; Bacterial pneumonia; Internal medicine; Immunology; Biology; Antibiotics; Bacteria; Pathology; Tuberculosis; Genetics","score_opus":0.005709134468197479,"score_gpt":0.22394064700334126,"score_spread":0.21823151253514378,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2918088677","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960136,0.00047935432,0.000006460505,0.00060916675,0.001507504,0.00091705064,0.000030701493,0.000031976473,0.00040422345],"genre_scores_gemma":[0.99850965,0.0000125137585,0.000017361339,0.000071616385,0.000057157158,0.000018907514,0.00008186293,0.000018407914,0.0012125182],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99852085,0.00008795057,0.00038088934,0.00044586018,0.00030562698,0.0002588324],"domain_scores_gemma":[0.9976883,0.00008607122,0.0003143073,0.0015157316,0.00019289962,0.00020270396],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005299004,0.00018532296,0.00032287667,0.00010693,0.0005024849,0.00009002696,0.0001343863,0.0000676594,0.00013946892],"category_scores_gemma":[0.00006138926,0.000110426365,0.000100942874,0.0003232773,0.0006987247,0.00009946079,0.00014827638,0.00022836214,0.00001758044],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018797358,0.0002498839,0.4053818,0.00040069388,0.0001285539,0.00040322583,0.0014096599,0.000057325906,0.5895155,0.0000046327345,0.0016234815,0.00063723855],"study_design_scores_gemma":[0.002594221,0.0003777655,0.9600344,0.0021531163,0.00054782955,0.0014512901,0.00093137287,0.0018367781,0.022257227,0.00042288174,0.006965346,0.00042781176],"about_ca_topic_score_codex":0.00035559584,"about_ca_topic_score_gemma":0.00015545986,"teacher_disagreement_score":0.5672583,"about_ca_system_score_codex":0.00007759264,"about_ca_system_score_gemma":0.0004184236,"threshold_uncertainty_score":0.45030564},"labels":[],"label_agreement":null},{"id":"W2919117463","doi":"10.2147/idr.s187226","title":"&lt;p&gt;In vitro activity and pharmacodynamic/pharmacokinetic parameters of clarithromycin and azithromycin: why they matter in the treatment of respiratory tract infections&lt;/p&gt;","year":2019,"lang":"en","type":"review","venue":"Infection and Drug Resistance","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Queen Elizabeth II Health Sciences Centre; Dalhousie University","funders":"","keywords":"Azithromycin; Clarithromycin; Pharmacology; Pharmacodynamics; Medicine; Respiratory tract infections; Pharmacokinetics; Antibiotics; Antibacterial agent; Internal medicine; Biology; Microbiology; Respiratory system","score_opus":0.03232537158200534,"score_gpt":0.3317296841370634,"score_spread":0.29940431255505806,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2919117463","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5172081,0.47985908,0.000013360825,0.00020382914,0.00022781928,0.0016762776,0.00006597999,0.000024014164,0.0007215174],"genre_scores_gemma":[0.25598818,0.7433521,0.000012668016,0.0001854798,0.000047828653,0.00021635272,0.000010461888,0.000039160503,0.00014772451],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9972999,0.0007486047,0.0008129685,0.000586924,0.00025004486,0.0003015689],"domain_scores_gemma":[0.9981966,0.0006638341,0.00054049544,0.00042123356,0.00006596504,0.00011187749],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000516019,0.0005253392,0.0016744867,0.0007490185,0.00011298327,0.000035165587,0.00006821952,0.00030262434,0.00002239458],"category_scores_gemma":[0.000032791802,0.00036500182,0.00029596686,0.00056929997,0.0003100266,0.00016719082,0.000026909862,0.0005040284,0.000004883942],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012059383,0.012512482,0.0719974,0.061975412,0.0016076351,0.0001739596,0.002680302,0.00006370728,0.10414645,0.00019826814,0.0008778194,0.7425606],"study_design_scores_gemma":[0.0047413525,0.00082678476,0.12231721,0.0057842894,0.002101898,0.0002645539,0.0000324196,0.000043247255,0.0006469574,0.00004894059,0.86257017,0.00062217395],"about_ca_topic_score_codex":0.00017666937,"about_ca_topic_score_gemma":0.00089684076,"teacher_disagreement_score":0.86169237,"about_ca_system_score_codex":0.00023276477,"about_ca_system_score_gemma":0.00016130693,"threshold_uncertainty_score":0.9998802},"labels":[],"label_agreement":null},{"id":"W2920846454","doi":"10.1093/infdis/jiz053","title":"Global and Regional Burden of Hospital Admissions for Pneumonia in Older Adults: A Systematic Review and Meta-Analysis","year":2019,"lang":"en","type":"review","venue":"The Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":121,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Global Health Research","funders":"Medical Research Council; Sanofi Pasteur; Centers for Disease Control and Prevention; Public Health England; Innovative Medicines Initiative; Imperial College London; University of Edinburgh; National Institute for Health and Care Research; Pfizer; National Institute for Health Research Health Protection Research Unit; Wellcome Trust; European Commission; Sanofi; World Health Organization; British Society for Immunology; European Respiratory Society; NIHR Imperial Biomedical Research Centre; Bill and Melinda Gates Foundation; Novavax; Gilead Sciences; European Federation of Pharmaceutical Industries and Associations","keywords":"Medicine; Pneumonia; Case fatality rate; Population; Pediatrics; Mortality rate; Emergency medicine; Epidemiology; Disease; Intensive care medicine; Internal medicine; Environmental health","score_opus":0.035357672592785605,"score_gpt":0.34892697649088483,"score_spread":0.3135693038980992,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2920846454","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00040582079,0.99568623,0.000018445398,0.000559981,0.00005844664,0.0029991101,0.00024892626,0.000008297062,0.000014755495],"genre_scores_gemma":[0.004273374,0.9951846,0.000003686647,0.00025999162,0.00006159336,0.00013327664,0.000010213428,0.000020566315,0.000052686704],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9974719,0.00045310546,0.0014278152,0.0001851183,0.00029532937,0.0001666984],"domain_scores_gemma":[0.9964384,0.00070921186,0.0018165405,0.00036780778,0.000383859,0.00028417507],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00054778124,0.00034939265,0.0060751312,0.00037868845,0.000075156124,0.000017844763,0.00014151698,0.00013109832,0.000040642928],"category_scores_gemma":[0.0010136008,0.00016467311,0.0026404334,0.0007418318,0.00009548621,0.00007877544,0.000048746737,0.00023963694,0.0000012516052],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018888384,0.00036885336,0.00046270722,0.9066946,0.09139431,0.000016227277,0.000084875945,0.0000071358068,1.5819775e-7,0.000019367602,0.00027616727,0.00065673725],"study_design_scores_gemma":[0.0005454158,0.00057845854,0.00045179485,0.09312707,0.90080714,0.0008222337,0.0000681113,0.0000039528836,1.08756e-8,0.000025389158,0.0034152642,0.00015515459],"about_ca_topic_score_codex":0.000022616568,"about_ca_topic_score_gemma":0.00001074286,"teacher_disagreement_score":0.8135675,"about_ca_system_score_codex":0.00010368657,"about_ca_system_score_gemma":0.00052260177,"threshold_uncertainty_score":0.67151743},"labels":[],"label_agreement":null},{"id":"W2921596937","doi":"10.1371/journal.pone.0213238","title":"Disparities by sex in care-seeking behaviors and treatment outcomes for pneumonia among children admitted to hospitals in Bangladesh","year":2019,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"International Centre for Diarrhoeal Disease Research, Bangladesh; Johns Hopkins University; Global Affairs Canada; Department for International Development; Johns Hopkins Bloomberg School of Public Health; Styrelsen för Internationellt Utvecklingssamarbete; GAVI Alliance","keywords":"Pneumonia; Medicine; Incidence (geometry); Multivariate analysis; Pediatrics; Internal medicine","score_opus":0.015140474808190392,"score_gpt":0.25259742481225556,"score_spread":0.23745695000406516,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2921596937","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99717814,0.00010682619,0.0000011717788,0.000546824,0.000032013835,0.0019275505,0.00007818456,0.0000446116,0.00008465765],"genre_scores_gemma":[0.9985527,0.00003165744,0.000048673315,0.00023035434,0.000023979757,0.00041313958,0.000059111953,0.000027361757,0.0006130309],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99909455,0.000021102698,0.0002233912,0.00026486503,0.00013663695,0.00025946958],"domain_scores_gemma":[0.9995718,0.000059412796,0.000037336413,0.00018313907,0.00002766939,0.000120627126],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000047394096,0.00016393707,0.0004398993,0.00020206699,0.00004150701,0.000020793232,0.000040500487,0.000093738396,0.000012591114],"category_scores_gemma":[0.000032226402,0.00013805059,0.000052911422,0.00013053484,0.00002805363,0.00007160835,0.00002379623,0.00010203288,0.000008559771],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012437874,0.0007960684,0.961302,0.000053618238,0.00008447518,0.000005996171,0.000755512,0.0000018464059,0.036649864,0.0000027842407,0.000007663596,0.00032776943],"study_design_scores_gemma":[0.0018856863,0.00084884086,0.9907201,0.00022405942,0.0001349039,0.0000015627312,0.00020832817,0.00001987183,0.005778749,0.0000029489884,0.000030196692,0.00014473162],"about_ca_topic_score_codex":0.0005702592,"about_ca_topic_score_gemma":0.0005235791,"teacher_disagreement_score":0.030871116,"about_ca_system_score_codex":0.00017976135,"about_ca_system_score_gemma":0.000029376664,"threshold_uncertainty_score":0.56295395},"labels":[],"label_agreement":null},{"id":"W2922311392","doi":"10.5206/uwomj.v84i2.4296","title":"Community-acquired pneumonia and pneumococcal vaccination in the elderly","year":2016,"lang":"en","type":"article","venue":"University of Western Ontario Medical Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Streptococcus pneumoniae; Pneumonia; Pneumococcal pneumonia; Community-acquired pneumonia; Etiology; Vaccination; Medicine; Epidemiology; Elderly people; Intensive care medicine; Population; Pneumococcal infections; Immunology; Gerontology; Environmental health; Microbiology; Biology; Pathology; Internal medicine","score_opus":0.01828979514358464,"score_gpt":0.24551470318727428,"score_spread":0.22722490804368964,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2922311392","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98255205,0.000013835441,0.0005059302,0.01577618,0.00007904418,0.00009095723,0.0000012231651,0.0000090539415,0.0009717343],"genre_scores_gemma":[0.99886674,0.000090749905,0.000017078026,0.00033442353,0.000046702007,1.1182481e-7,9.033746e-7,0.000003818378,0.00063949724],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989375,0.00028566507,0.00017522396,0.00007624134,0.00037723943,0.00014816184],"domain_scores_gemma":[0.99932456,0.00017047726,0.00009397929,0.00014222904,0.00006718612,0.00020159617],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00071315345,0.00007985759,0.00018929566,0.00013999111,0.0002537127,0.000010902757,0.0002023528,0.000117902775,0.00036759442],"category_scores_gemma":[0.000085623644,0.000047326885,0.00006542557,0.00007545271,0.00019113762,0.00014772544,0.000055257955,0.00054949254,0.0000073872493],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012666342,0.0003762214,0.9302126,0.000022583281,0.000053413773,0.00061204506,0.00808511,2.7707955e-7,0.010852129,0.000042786916,0.00012854004,0.049487624],"study_design_scores_gemma":[0.002393252,0.0007701267,0.970318,0.0002411936,0.000051349794,0.002180435,0.0017907565,0.000002791383,0.00002144382,0.00009326921,0.02207964,0.00005770894],"about_ca_topic_score_codex":0.0033053942,"about_ca_topic_score_gemma":0.09110438,"teacher_disagreement_score":0.08779898,"about_ca_system_score_codex":0.0001737604,"about_ca_system_score_gemma":0.00033322442,"threshold_uncertainty_score":0.9254806},"labels":[],"label_agreement":null},{"id":"W2930119040","doi":"10.2196/12603","title":"Pneumococcal Vaccination Utilization Among Hispanic Long-Term Colorectal Cancer Survivors: Cross-Sectional Assessment of Claims","year":2019,"lang":"en","type":"article","venue":"JMIR Public Health and Surveillance","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Vaccination; Survivorship curve; Odds; Colorectal cancer; Epidemiology; Ethnic group; Comorbidity; Logistic regression; Cross-sectional study; Cancer; Demography; Receipt; Gerontology; Internal medicine; Immunology","score_opus":0.04181580073048024,"score_gpt":0.3865685645678676,"score_spread":0.34475276383738734,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2930119040","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960154,0.00018968587,0.00024068957,0.0010429105,0.0006623248,0.0010529147,0.000035021738,0.00007919907,0.00068180775],"genre_scores_gemma":[0.99852586,0.00036501675,0.000007285956,0.0003298364,0.00014606865,0.00016025666,0.00015933099,0.00001983647,0.00028650602],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981631,0.0001968226,0.0005300542,0.0003648871,0.00035539415,0.00038972203],"domain_scores_gemma":[0.99863607,0.00010678327,0.00029533028,0.00018780913,0.00037465958,0.0003993724],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00076182006,0.00016188316,0.00038781634,0.00020622485,0.0001795004,0.000056815825,0.00006583282,0.00016994556,0.00035669212],"category_scores_gemma":[0.00005846869,0.00014275116,0.00007915328,0.000413508,0.00007271569,0.00024241897,0.000033995493,0.00026145563,0.0000059870954],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028802404,0.00019172288,0.9939128,0.0005048066,0.000032354383,0.0000010044723,0.000090466325,0.000012025916,0.001707541,0.00018382311,0.000024713096,0.0033099214],"study_design_scores_gemma":[0.0010687044,0.0005445188,0.9951587,0.000024355388,0.0000010103549,0.00002499426,0.00002140145,0.0014145736,0.0000112794005,0.0000049436785,0.0016028736,0.00012264597],"about_ca_topic_score_codex":0.00016012645,"about_ca_topic_score_gemma":0.001168061,"teacher_disagreement_score":0.0031872755,"about_ca_system_score_codex":0.00031089064,"about_ca_system_score_gemma":0.001202655,"threshold_uncertainty_score":0.5821223},"labels":[],"label_agreement":null},{"id":"W2937404529","doi":"10.1016/j.carbpol.2019.03.070","title":"Removal of cell wall polysaccharide in pneumococcal capsular polysaccharides by selective degradation via deamination","year":2019,"lang":"en","type":"article","venue":"Carbohydrate Polymers","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"","keywords":"Deamination; Polysaccharide; Chemistry; Glycosidic bond; Hydrolysis; Aqueous solution; Biochemistry; Stereochemistry; Organic chemistry; Enzyme","score_opus":0.006720980256854926,"score_gpt":0.23083146830291587,"score_spread":0.22411048804606096,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2937404529","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99531317,0.00046722058,0.00018929107,0.00039089166,0.00028698455,0.0005728671,0.000016168055,0.000061922605,0.0027014995],"genre_scores_gemma":[0.9981332,0.00004555956,0.000051418978,0.00029235968,0.00003828595,0.000029099127,0.000044462115,0.000040769766,0.0013248788],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983498,0.00010019121,0.00047685858,0.0003940071,0.00030106073,0.00037812573],"domain_scores_gemma":[0.999145,0.000061167164,0.00021315593,0.00030409315,0.000119629396,0.00015698557],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018441518,0.00024187291,0.00041884556,0.00051486556,0.000053853062,0.000013276743,0.00010664406,0.00020899212,0.00009681649],"category_scores_gemma":[0.000035090703,0.0002340546,0.00014541771,0.00081363885,0.00008220681,0.0002076674,0.000026695589,0.00030952555,0.000051608928],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000053954653,0.00019647201,0.018105362,0.000061814404,0.000042990792,0.000040090337,0.0003297367,0.000032547498,0.9800206,0.000042137468,0.000019023446,0.0010552972],"study_design_scores_gemma":[0.0014106238,0.00034033266,0.022239635,0.00007027857,0.00011107241,0.000103170685,0.0002289221,0.0026177687,0.9722663,0.000038441733,0.0003076744,0.000265793],"about_ca_topic_score_codex":0.0010098517,"about_ca_topic_score_gemma":0.00004758093,"teacher_disagreement_score":0.0077542854,"about_ca_system_score_codex":0.00025048904,"about_ca_system_score_gemma":0.00021146206,"threshold_uncertainty_score":0.954447},"labels":[],"label_agreement":null},{"id":"W2938226202","doi":"10.1097/md.0000000000015118","title":"Association between inflammation factors and Mycoplasma pneumoniae in children","year":2019,"lang":"en","type":"article","venue":"Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Mycoplasma pneumoniae; PsycINFO; MEDLINE; Scopus; Cochrane Library; Family medicine; Meta-analysis; Internal medicine; Pneumonia","score_opus":0.008446581638566516,"score_gpt":0.24812745463573838,"score_spread":0.23968087299717186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2938226202","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9906038,0.00004023444,0.0000057491548,0.0070240255,0.00015027942,0.00040747598,0.000003750775,0.00005151299,0.001713147],"genre_scores_gemma":[0.9985036,0.000045805093,0.0000035967064,0.00015486979,0.00039930816,0.000006556556,0.00005433137,0.00001178529,0.0008200954],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991248,0.000040293737,0.00025447484,0.00017187683,0.00023823856,0.00017030594],"domain_scores_gemma":[0.9995011,0.00012510834,0.00010186852,0.00013411435,0.00004251234,0.0000952943],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002693028,0.000115873474,0.00030928047,0.00024909375,0.000036849528,0.000005579656,0.000029362265,0.00012919816,0.00013667789],"category_scores_gemma":[0.00021999593,0.00008179722,0.000025720594,0.00024145299,0.000027838181,0.00008445693,0.00001596026,0.00022700748,0.00007048856],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000033132835,0.000008602851,0.97321016,0.000022277969,0.00005618019,0.0000012656443,0.00030639107,0.0000016271149,0.024967866,0.000015822408,0.000086715714,0.001319771],"study_design_scores_gemma":[0.0016285225,0.00026929023,0.991725,0.00011712487,0.00009473579,0.000022379145,0.00007311948,0.000022377066,0.00061818335,0.000034036915,0.0053188913,0.00007633345],"about_ca_topic_score_codex":0.00010311089,"about_ca_topic_score_gemma":0.000028713514,"teacher_disagreement_score":0.024349682,"about_ca_system_score_codex":0.00014161809,"about_ca_system_score_gemma":0.000028923669,"threshold_uncertainty_score":0.33355936},"labels":[],"label_agreement":null},{"id":"W2939861999","doi":"10.1016/j.vaccine.2019.04.031","title":"Maternal immunization: A call to accelerate progress","year":2019,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Izaak Walton Killam Health Centre; Dalhousie University","funders":"","keywords":"Immunization; Medicine; Vaccination; Immunology; Pediatrics; Immune system","score_opus":0.010664626814749235,"score_gpt":0.2780250257327328,"score_spread":0.2673603989179836,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2939861999","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99110186,0.000056553017,0.00004991791,0.005497656,0.000326152,0.0004073307,0.0000025995485,0.00010112919,0.002456777],"genre_scores_gemma":[0.99127,0.000008978285,0.000102418686,0.0021101844,0.0001787956,0.000025296224,0.000007682097,0.000017880855,0.0062787468],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99944276,0.000013188729,0.0001430063,0.00014071364,0.00010315984,0.0001571828],"domain_scores_gemma":[0.99948746,0.000006481121,0.000028876711,0.00025635437,0.00010015709,0.00012065344],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000050773717,0.00008653884,0.00015407136,0.00010337505,0.00004521224,0.000022266551,0.000061875195,0.00004556537,0.0008346842],"category_scores_gemma":[0.000010485348,0.000064727894,0.00003689767,0.00025883806,0.000002433803,0.00005327834,0.00004014957,0.0000942109,0.0016560652],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006679244,0.00008088851,0.9211915,0.000048387312,0.000038385435,0.000026163005,0.000072267,0.000025710075,0.07417956,0.000089225505,0.0023830433,0.0017980635],"study_design_scores_gemma":[0.0011779064,0.0003947678,0.83582884,0.000079151054,0.000026062124,0.00013128547,0.000009981744,0.00010009928,0.007983067,0.0000060811076,0.154167,0.00009576849],"about_ca_topic_score_codex":0.0000137897705,"about_ca_topic_score_gemma":0.000005533915,"teacher_disagreement_score":0.15178394,"about_ca_system_score_codex":0.000028755192,"about_ca_system_score_gemma":0.00003851828,"threshold_uncertainty_score":0.99912125},"labels":[],"label_agreement":null},{"id":"W2940336677","doi":"10.1093/cid/ciy892","title":"Similar Outcomes of<i>Legionella</i>Pneumonia in Treated Human Immunodeficiency Virus Infection","year":2018,"lang":"en","type":"letter","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Medicine; Human immunodeficiency virus (HIV); Virology; Sida; Immunopathology; Viral disease; Immunology","score_opus":0.05187068975806507,"score_gpt":0.38170191380258994,"score_spread":0.32983122404452486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2940336677","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9668891,0.00032833894,0.000014191853,0.024910498,0.0021425174,0.0012070551,0.00021813589,0.000569744,0.0037204628],"genre_scores_gemma":[0.812218,0.0011572172,0.0000014414354,0.18149723,0.0030743596,0.00018759008,0.0005563245,0.00017352315,0.0011342895],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9949336,0.00054202386,0.0022437735,0.0010248217,0.000554144,0.0007016195],"domain_scores_gemma":[0.9964925,0.00069070637,0.00088544737,0.0012237995,0.00044309488,0.00026444698],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.00040252332,0.00076296646,0.0022239916,0.00096460845,0.00030268656,0.000053488904,0.00022498675,0.0018008325,0.00022360044],"category_scores_gemma":[0.00095588446,0.000640212,0.0016193147,0.0008936551,0.0010771278,0.00014859368,0.0001390775,0.0025190888,0.00028855025],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002186265,0.002269482,0.894109,0.0003503241,0.00045742193,0.00037811606,0.000017733155,0.000009998047,0.0006607555,0.0000073149517,0.10143153,0.00028644782],"study_design_scores_gemma":[0.0021814625,0.0019236102,0.83009166,0.00040779883,0.0012341139,0.00003408239,0.0000034655309,0.000013462495,0.00006541666,0.00031959568,0.16318768,0.0005376513],"about_ca_topic_score_codex":0.0007280875,"about_ca_topic_score_gemma":0.0002990015,"teacher_disagreement_score":0.15658674,"about_ca_system_score_codex":0.00027200254,"about_ca_system_score_gemma":0.00038748657,"threshold_uncertainty_score":0.99978215},"labels":[],"label_agreement":null},{"id":"W2941418267","doi":"10.1101/612945","title":"Estimating the Relative Probability of Direct Transmission between Infectious Disease Patients","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"NIH Office of the Director; Canadian Institutes of Health Research; Center for AIDS Research, University of Washington; National Institutes of Health; National Institute of Allergy and Infectious Diseases; CRDF Global","keywords":"Bayes' theorem; Computer science; Transmission (telecommunications); Statistics; Infectious disease (medical specialty); Receiver operating characteristic; Set (abstract data type); Covariate; Machine learning; Artificial intelligence; Disease; Mathematics; Bayesian probability; Medicine","score_opus":0.016294062129249616,"score_gpt":0.24477009131649058,"score_spread":0.22847602918724097,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2941418267","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99249023,0.00019892126,0.0032100675,0.00033643897,0.0007110442,0.002439349,0.0002552595,0.00027866417,0.000080005164],"genre_scores_gemma":[0.99829453,0.000021412454,0.0010027558,0.00010307778,0.00030088073,0.00018260302,0.0000012331408,0.000087282744,0.0000062244294],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99727124,0.00031556564,0.0007404842,0.0007743647,0.0005200977,0.0003782362],"domain_scores_gemma":[0.9966987,0.00025814862,0.000615788,0.0013168997,0.0007378786,0.00037258072],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005967563,0.00048215716,0.00080703036,0.00020217795,0.00024839028,0.000044864606,0.0002560665,0.0004200597,0.000024270163],"category_scores_gemma":[0.0006802218,0.00034942123,0.00038642102,0.00047784462,0.00024137802,0.00013334429,0.00022512383,0.0011118676,0.000029550843],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046910056,0.00047845498,0.97699517,0.0017058878,0.00033465945,0.0000070722394,0.00003252446,0.00068780675,0.019601963,0.000051248,0.000039664523,0.000018664272],"study_design_scores_gemma":[0.0008336953,0.00020299086,0.98725504,0.0014327094,0.00085000816,6.1230674e-9,4.5496193e-7,0.00072501344,0.0066989856,0.000017372593,0.0016033424,0.0003803737],"about_ca_topic_score_codex":0.000030080108,"about_ca_topic_score_gemma":3.5875934e-7,"teacher_disagreement_score":0.012902978,"about_ca_system_score_codex":0.0003090933,"about_ca_system_score_gemma":0.0009672631,"threshold_uncertainty_score":0.99989575},"labels":[],"label_agreement":null},{"id":"W2945892804","doi":"10.26719/emhj.19.039","title":"Cost-effectiveness of introducing the pneumococcal conjugate vaccine for children under 5 years in the Islamic Republic of Iran","year":2019,"lang":"en","type":"article","venue":"Eastern Mediterranean Health Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Saskatchewan Health Authority","funders":"Ministry of Health and Medical Education; Bill and Melinda Gates Foundation","keywords":"Medicine; Meningitis; Pneumonia; Streptococcus pneumoniae; Pneumococcal conjugate vaccine; Pediatrics; Vaccination; Otitis; Pneumococcal infections; Pneumococcal vaccine; Intensive care medicine; Internal medicine; Immunology; Antibiotics; Surgery","score_opus":0.06283998645928306,"score_gpt":0.35538059933427224,"score_spread":0.29254061287498917,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2945892804","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9875053,0.00028790056,0.0006102667,0.008290831,0.0009845167,0.0022615269,0.000015853135,0.000008792174,0.000034978362],"genre_scores_gemma":[0.9977331,0.00006837266,0.000017426559,0.0013642637,0.00071933726,0.000034806457,0.000014142739,0.000023625533,0.000024879822],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.997575,0.00073917425,0.00075329543,0.00020084028,0.00037381862,0.00035788745],"domain_scores_gemma":[0.9984163,0.0004674596,0.000479687,0.0003999253,0.0001376155,0.00009898778],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0040458734,0.00014886408,0.00053062366,0.00025519397,0.00011348439,0.000021655396,0.0002534515,0.000075854936,0.00004418567],"category_scores_gemma":[0.00016114548,0.00008336142,0.00017912818,0.00029705468,0.00006412146,0.00010301445,0.000027494323,0.00069593516,0.0000066513617],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020915244,0.0009802089,0.88119805,0.0021240339,0.00052081054,0.000025885278,0.016358279,0.0014725404,0.046079304,0.0003495059,0.00074094615,0.048058916],"study_design_scores_gemma":[0.004818635,0.0015062277,0.9890442,0.00080803,0.000051224863,0.0012794418,0.0011520281,0.00039953733,0.00019967773,0.00019653377,0.00046095898,0.00008349959],"about_ca_topic_score_codex":0.00005631855,"about_ca_topic_score_gemma":0.000040336472,"teacher_disagreement_score":0.10784616,"about_ca_system_score_codex":0.00009881606,"about_ca_system_score_gemma":0.0003214265,"threshold_uncertainty_score":0.33993798},"labels":[],"label_agreement":null},{"id":"W2946366091","doi":"10.1016/j.vaccine.2019.03.013","title":"Effect of a pneumococcal whole cell vaccine on influenza A-induced pneumococcal otitis media in infant mice","year":2019,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Health and Medical Research Council; State Government of Victoria; Monash University; Murdoch Children's Research Institute; Institute of Infection and Immunity; Veski; Children’s Hospital of Wisconsin Research Institute","keywords":"Otitis; Streptococcus pneumoniae; Medicine; Influenza vaccine; Pneumococcal disease; Pneumococcal infections; Immunology; Acute otitis media; Virology; Pneumococcal vaccine; Pneumococcal conjugate vaccine; Microbiology; Vaccination; Biology; Antibiotics","score_opus":0.00850598639432109,"score_gpt":0.2706012320715496,"score_spread":0.2620952456772285,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2946366091","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99454254,0.000104732026,0.0000015553571,0.0007066499,0.0006659797,0.0013301793,0.000022695971,0.000105224186,0.0025204376],"genre_scores_gemma":[0.99864054,0.000024382654,0.0000077507,0.0006709973,0.0002452412,0.00007639906,0.000027930279,0.00006297728,0.00024378659],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9975459,0.00022476415,0.0007778193,0.0005444917,0.00037405943,0.0005329865],"domain_scores_gemma":[0.9980659,0.00062210846,0.0002197585,0.0006939169,0.00011426852,0.0002840426],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00055077637,0.00041796704,0.0010492903,0.0006917298,0.00005044646,0.000014442319,0.00019758819,0.0003117951,0.00037216532],"category_scores_gemma":[0.00030159677,0.00031899114,0.0002450214,0.0008380992,0.000010036115,0.00013233138,0.00009397021,0.0007447068,0.00085010915],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005837066,0.0003404044,0.31474438,0.0003012895,0.000033871685,0.00006642962,0.00017114393,0.000056506015,0.6827431,0.000013499411,0.00010381247,0.00084191957],"study_design_scores_gemma":[0.01170425,0.005881239,0.6731535,0.00046931364,0.00012976867,0.00008581123,0.000039801434,0.00016769324,0.29958117,0.000009039445,0.008471625,0.0003067963],"about_ca_topic_score_codex":0.00012060912,"about_ca_topic_score_gemma":0.00015296365,"teacher_disagreement_score":0.38316187,"about_ca_system_score_codex":0.00013464299,"about_ca_system_score_gemma":0.00012971176,"threshold_uncertainty_score":0.9999278},"labels":[],"label_agreement":null},{"id":"W2947975513","doi":"10.1186/s12879-019-4067-3","title":"Pneumococcal pneumonia prevalence among adults with severe acute respiratory illness in Thailand - comparison of Bayesian latent class modeling and conventional analysis","year":2019,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier de l’Université de Montréal; McGill University","funders":"Centers for Disease Control and Prevention","keywords":"Medical microbiology; Pneumonia; Latent class model; Medicine; Parasitology; Respiratory illness; Respiratory system; Tropical medicine; Pulmonology; Intensive care medicine; Immunology; Internal medicine; Pathology; Statistics; Mathematics","score_opus":0.010688071255162529,"score_gpt":0.26662453851394696,"score_spread":0.25593646725878444,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2947975513","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977164,0.00025229534,0.0006531986,0.000019204886,0.00008999417,0.0007836165,0.00009381412,0.00008361734,0.00030784425],"genre_scores_gemma":[0.9996417,0.000038365048,0.000009637261,0.000052202133,0.000037568025,0.00008790475,0.000037711787,0.000024858457,0.0000700375],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982471,0.00013547094,0.0004988903,0.00048093233,0.00035428535,0.00028332713],"domain_scores_gemma":[0.99892366,0.00010266341,0.00021337683,0.0003422483,0.00017999728,0.00023803383],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001186998,0.00025597445,0.00066791906,0.0005293142,0.00011758852,0.00002909916,0.000073079034,0.0001322923,0.000086474094],"category_scores_gemma":[0.000036293583,0.0002068906,0.0002168165,0.0007007214,0.00016356805,0.00020574535,0.00005072871,0.00024237613,0.000007116396],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003601458,0.00058556,0.96689284,0.0007326661,0.00054529565,0.00001958495,0.00020035192,0.029200267,0.0013394989,0.00003552016,0.000002752277,0.00008553172],"study_design_scores_gemma":[0.003014813,0.0005790999,0.9143758,0.00044413542,0.0016890249,0.000028961358,0.00018086263,0.079341866,0.000054453798,0.000018078357,0.000015515996,0.00025739634],"about_ca_topic_score_codex":0.00008809808,"about_ca_topic_score_gemma":0.0008372815,"teacher_disagreement_score":0.05251703,"about_ca_system_score_codex":0.00009166237,"about_ca_system_score_gemma":0.00021220985,"threshold_uncertainty_score":0.8436754},"labels":[],"label_agreement":null},{"id":"W2948070837","doi":"10.1128/mra.00511-19","title":"Draft Genome Sequences of Two Streptococcus pneumoniae Strains Causing Invasive Infections in Children in Qatar","year":2019,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"British Columbia Centre for Disease Control; Sidra Medicine","keywords":"Streptococcus pneumoniae; Population; Genome; Pneumococcal infections; Biology; Microbiology; Medicine; Gene; Genetics; Environmental health; Antibiotics","score_opus":0.011440378803796022,"score_gpt":0.2677026362149085,"score_spread":0.25626225741111247,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2948070837","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971649,0.0001379629,0.000005102634,0.00022941564,0.00008468362,0.0010135944,0.00045185763,0.000029634522,0.00088282296],"genre_scores_gemma":[0.99828255,0.000035120494,0.000013202744,0.0005412201,0.000044031523,0.00004181682,0.00080291677,0.000017616561,0.00022152555],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983675,0.00015078855,0.0005392993,0.00042337907,0.000079959675,0.00043911434],"domain_scores_gemma":[0.9992968,0.000048404796,0.00018438183,0.00033322233,0.00006824363,0.00006895469],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024315935,0.00022091018,0.00047122006,0.0005477163,0.00007257267,0.000010190173,0.000116868076,0.00018052115,0.00017005243],"category_scores_gemma":[0.000035896337,0.00020272234,0.000095319854,0.0005182407,0.00022097513,0.00008897851,0.00009344886,0.0004052385,0.00008410197],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000006060068,0.0001928017,0.496174,0.000019365196,0.000048336256,0.000013424754,0.00029932696,0.00046761672,0.5027374,0.000005155628,0.000009645696,0.00002689018],"study_design_scores_gemma":[0.0071062823,0.0016007058,0.962396,0.00058131176,0.00010447748,0.0006793503,0.0010967944,0.000018474597,0.00844551,0.000040213698,0.017384198,0.0005466356],"about_ca_topic_score_codex":0.00032073027,"about_ca_topic_score_gemma":0.0007640914,"teacher_disagreement_score":0.49429187,"about_ca_system_score_codex":0.00021952804,"about_ca_system_score_gemma":0.0002565477,"threshold_uncertainty_score":0.82667774},"labels":[],"label_agreement":null},{"id":"W2948169749","doi":"10.1074/jbc.ra119.007571","title":"The pneumococcal σX activator, ComW, is a DNA-binding protein critical for natural transformation","year":2019,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases; University of Illinois at Urbana-Champaign; National Institutes of Health; University of Illinois at Chicago; University of Illinois System","keywords":"Promoter; Biology; Gene; DNA; Streptococcus pneumoniae; Genetics; Bacterial transcription; Transcription (linguistics); Cell biology; Computational biology; Gene expression; Bacteria","score_opus":0.02401801927040582,"score_gpt":0.305285582190665,"score_spread":0.2812675629202592,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2948169749","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9918465,0.00006540224,0.00006707249,0.0068789707,0.00019498554,0.00027466804,0.000008412432,0.000014452943,0.0006495551],"genre_scores_gemma":[0.999072,0.000017925719,0.00004935453,0.0002399378,0.00029852227,0.000014677235,0.0000034563063,0.0000060510574,0.00029803318],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99912786,0.000024659095,0.00037493318,0.00009788026,0.00016378469,0.00021085101],"domain_scores_gemma":[0.9991691,0.00028879696,0.00013801966,0.00009751344,0.00018268403,0.00012389362],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029576512,0.00010920906,0.00024225302,0.000017851988,0.00016161166,0.000030395662,0.00010733837,0.00019118396,0.00009325093],"category_scores_gemma":[0.0004385001,0.00005410798,0.00027859386,0.00007267965,0.000113331735,0.00008429843,0.000012520741,0.0005184189,0.000009724659],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021899008,0.0000838641,0.0014508133,0.000094049545,0.00004261291,0.0000055491846,0.000032233333,1.5909897e-7,0.99726695,0.00006984238,0.000100661746,0.0006342772],"study_design_scores_gemma":[0.0012138833,0.00058780867,0.0036306807,0.00016483893,0.000042986318,0.0006263465,0.0003027821,0.00006566838,0.95506287,0.00026200144,0.037927307,0.00011284486],"about_ca_topic_score_codex":1.1856474e-7,"about_ca_topic_score_gemma":3.6386698e-8,"teacher_disagreement_score":0.042204097,"about_ca_system_score_codex":0.00007576547,"about_ca_system_score_gemma":0.00008485328,"threshold_uncertainty_score":0.2252301},"labels":[],"label_agreement":null},{"id":"W2949315801","doi":"10.1093/jac/dkz262","title":"Pseudomonas aeruginosa with NDM-1, DIM-1 and PME-1 β-lactamases, and RmtD3 16S rRNA methylase, encoded by new genomic islands","year":2019,"lang":"en","type":"letter","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Circulatory and Respiratory Health; Ministerstwo Zdrowia; Narodowe Centrum Nauki","keywords":"Medicine; Polypharmacy; COPD; Adverse effect; Clinical trial; Intensive care medicine; Drug; Diabetes mellitus; Medical prescription; Internal medicine; Pharmacology","score_opus":0.006834015548997353,"score_gpt":0.22404925251426383,"score_spread":0.21721523696526648,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2949315801","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.55648136,0.0012765173,0.0003406393,0.44021326,0.0006209577,0.0005538534,0.0001046921,0.00003735167,0.00037137239],"genre_scores_gemma":[0.028549505,0.0111379055,0.0016182509,0.9421724,0.0075069605,0.0000031303682,0.00011640552,0.00030107424,0.008594346],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99779224,0.00010210757,0.0007587875,0.00045882945,0.00039735326,0.0004907067],"domain_scores_gemma":[0.9980979,0.00016934736,0.00090897956,0.00035978164,0.00020263939,0.00026135545],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00024668057,0.0006350625,0.0014223155,0.00045341236,0.00013454823,0.0001438044,0.00019568128,0.0008264441,0.00015047053],"category_scores_gemma":[0.000021251635,0.00044748065,0.00030108297,0.00019533104,0.00024027645,0.00019320242,0.00003619877,0.0022683544,0.000011542306],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033798916,0.00007461529,0.0032982947,0.00017818883,0.0005611338,0.00033504737,0.00019398342,0.0000011637158,0.36828905,1.8995922e-7,0.62617904,0.000551279],"study_design_scores_gemma":[0.0086062,0.0015382697,0.0007752947,0.0006524224,0.00059091154,0.008964532,0.000022073438,0.0000048587353,0.035915364,0.000009579872,0.94237643,0.00054407364],"about_ca_topic_score_codex":0.000044331093,"about_ca_topic_score_gemma":0.000006391574,"teacher_disagreement_score":0.52793187,"about_ca_system_score_codex":0.00013183494,"about_ca_system_score_gemma":0.00077219744,"threshold_uncertainty_score":0.9997977},"labels":[],"label_agreement":null},{"id":"W2951216710","doi":"10.1101/386078","title":"Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"NIHR Oxford Biomedical Research Centre; Rijksinstituut voor Volksgezondheid en Milieu; Fonden til Lægevidenskabens Fremme; Wageningen University and Research; Medical Research Council; Ministerie van Economische Zaken, Landbouw en Innovatie; Novo Nordisk Fonden; H. Lundbeck A/S; Lægeforeningen; U.S. Public Health Service; Lundbeckfonden; Nederlandse Zuivel Organisatie; Erasmus Medisch Centrum; March of Dimes Foundation; Dagmar Marshalls Fond; ZonMw; Sundhed og Sygdom, Det Frie Forskningsråd; National Research Foundation; European Commission; Egmont Fonden; A.P. Møller og Hustru Chastine Mc-Kinney Møllers Fond til almene Formaal; Royal Society; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Danmarks Grundforskningsfond; Wellcome Trust; Ministerie van Volksgezondheid, Welzijn en Sport; Augustinus Fonden; Novo Nordisk; National Institute for Health and Care Research","keywords":"Streptococcus pneumoniae; Meningitis; Biology; Pathogen; Serotype; Genetic variation; Human pathogen; Bacteremia; Genome; Pneumococcal disease; Genetics; Microbiology; Gene; Immunology; Virology; Antibiotics; Medicine","score_opus":0.03138233413500618,"score_gpt":0.2558449807210822,"score_spread":0.224462646586076,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2951216710","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99644756,0.0018537042,0.0000850905,0.00013329629,0.0003327454,0.00079713285,0.00021815597,0.000077835975,0.000054477172],"genre_scores_gemma":[0.99818957,0.0003887476,0.00073198735,0.0000739382,0.00045464333,0.00007408515,3.2169734e-7,0.00008048453,0.000006216296],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977322,0.00015920092,0.0008488319,0.00055607146,0.00035266002,0.00035104327],"domain_scores_gemma":[0.99715716,0.000059016646,0.0007139926,0.0011608844,0.00069469115,0.00021428338],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00072551065,0.00039159393,0.0008641399,0.00027263758,0.00020371635,0.000037549205,0.00024095323,0.00037687848,0.00005459208],"category_scores_gemma":[0.0001131981,0.00031284726,0.00021266675,0.00029529975,0.0005723824,0.000039253464,0.00043776951,0.0005558766,0.0000040179475],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000005363212,0.000056273642,0.07308814,0.00067988737,0.00023522043,0.000018966515,0.00005835589,0.00000825845,0.92569804,0.000120325145,0.000029081746,0.0000020806915],"study_design_scores_gemma":[0.0003998234,0.00029998727,0.39086452,0.0008717817,0.0004862716,3.4148766e-7,0.000017364888,0.000059123926,0.6061598,0.000012731271,0.00050105894,0.0003271738],"about_ca_topic_score_codex":0.000036443318,"about_ca_topic_score_gemma":0.0000016284813,"teacher_disagreement_score":0.3195382,"about_ca_system_score_codex":0.00013566605,"about_ca_system_score_gemma":0.00054333016,"threshold_uncertainty_score":0.99993235},"labels":[],"label_agreement":null},{"id":"W2951416322","doi":"10.1097/inf.0000000000002313","title":"To LP or not to LP? Identifying the Etiology of Pediatric Meningitis","year":2019,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"","keywords":"Medicine; Viral meningitis; Meningitis; Aseptic meningitis; Lumbar puncture; Streptococcus pneumoniae; Neisseria meningitidis; Bacterial meningitis; Haemophilus influenzae; Etiology; Antibiotics; Intensive care medicine; Pediatrics; Cerebrospinal fluid; Immunology; Internal medicine; Microbiology; Biology","score_opus":0.02289666565659738,"score_gpt":0.31436919666139684,"score_spread":0.2914725310047995,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2951416322","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99208117,0.00019999711,0.00047106115,0.003479299,0.0020522552,0.00085306336,0.000024279547,0.00006868173,0.0007702164],"genre_scores_gemma":[0.9914004,0.0005857335,0.00002261496,0.0025273226,0.004417394,0.000041876392,0.0000013786305,0.000037901096,0.0009653655],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99786556,0.00027060325,0.0005972949,0.00025628333,0.00051723263,0.00049300207],"domain_scores_gemma":[0.9977124,0.0005043206,0.00031540848,0.0005044758,0.00033235512,0.0006310886],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008133468,0.00023605635,0.00038004358,0.00060640124,0.000584714,0.00007542288,0.00029279236,0.00009258545,0.00072285865],"category_scores_gemma":[0.0008756847,0.00012346005,0.00033031308,0.0012769557,0.000046998444,0.00010597307,0.00015076186,0.00067628303,0.00073500635],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005309314,0.00025578792,0.98612416,0.00013423148,0.00014497984,0.00010439455,0.000927711,0.0014907278,0.0020218075,0.00007729883,0.007612347,0.0005756213],"study_design_scores_gemma":[0.0018056027,0.0013721808,0.987963,0.000033605345,0.0021224949,0.002049051,0.0002840014,0.000052110325,0.000075683725,0.00027364973,0.0036546588,0.00031393516],"about_ca_topic_score_codex":0.000029578207,"about_ca_topic_score_gemma":0.000013606034,"teacher_disagreement_score":0.0039576883,"about_ca_system_score_codex":0.00014194111,"about_ca_system_score_gemma":0.0006490827,"threshold_uncertainty_score":0.94472647},"labels":[],"label_agreement":null},{"id":"W2952424815","doi":"10.1101/672733","title":"Designing ecologically-optimised vaccines using population genomics","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Engineering and Physical Sciences Research Council; Medical Research Council; Department for International Development; Royal Society; Government of Canada","keywords":"Serotype; Vaccination; Streptococcus pneumoniae; Herd immunity; Carriage; Population; Biology; Virology; Genomics; Pneumococcal infections; Medicine; Immunology; Microbiology; Antibiotics; Genetics; Environmental health; Genome; Gene","score_opus":0.03017193659805991,"score_gpt":0.257601575373461,"score_spread":0.2274296387754011,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2952424815","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98973083,0.00028999857,0.0058150124,0.00021265433,0.0018263417,0.001491226,0.000051807492,0.0005558521,0.00002627672],"genre_scores_gemma":[0.98461705,0.00013759443,0.013516302,0.00064351095,0.00082202617,0.000087228545,0.0000011323058,0.00016521341,0.000009954606],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9971689,0.00015866109,0.0007368993,0.0009930702,0.0003333114,0.0006091867],"domain_scores_gemma":[0.9973095,0.000088633285,0.0005657299,0.0011823396,0.00050730753,0.00034647083],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00048441748,0.0006262441,0.0009348689,0.00046207878,0.00028898203,0.00015822994,0.00026875228,0.0010041229,0.00009277819],"category_scores_gemma":[0.0002799011,0.00060635677,0.00032439636,0.00041173975,0.000054123953,0.0001378936,0.0003318234,0.0010475011,0.00010903841],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003972332,0.00015989903,0.16721112,0.00039123828,0.00020540546,0.00006589091,0.000004611382,0.0070190793,0.8248079,0.000045328343,0.00004865087,0.0000011482692],"study_design_scores_gemma":[0.0018471574,0.00025558582,0.87938976,0.0008652233,0.001027132,4.4293503e-7,0.0000052264304,0.0119124055,0.10045423,0.0000043452687,0.0028919077,0.0013465926],"about_ca_topic_score_codex":0.000043908465,"about_ca_topic_score_gemma":0.0000012759291,"teacher_disagreement_score":0.7243537,"about_ca_system_score_codex":0.0008904133,"about_ca_system_score_gemma":0.0009004454,"threshold_uncertainty_score":0.9996388},"labels":[],"label_agreement":null},{"id":"W2953252172","doi":"10.1080/21645515.2019.1612667","title":"A systematic literature review and network meta-analysis feasibility study to assess the comparative efficacy and comparative effectiveness of pneumococcal conjugate vaccines","year":2019,"lang":"en","type":"review","venue":"Human Vaccines & Immunotherapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"GlaxoSmithKline (Canada)","funders":"Pfizer Canada; GlaxoSmithKline; Pfizer","keywords":"Medicine; Pneumococcal conjugate vaccine; Meta-analysis; Randomized controlled trial; Haemophilus influenzae; Conjugate vaccine; Vaccine efficacy; Systematic review; Internal medicine; Vaccination; MEDLINE; Immunization; Streptococcus pneumoniae; Immunology; Biology","score_opus":0.33139147503868877,"score_gpt":0.4666880072535181,"score_spread":0.13529653221482935,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2953252172","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0057004956,0.9721064,0.000023293747,0.000050062914,0.00011315314,0.021826904,0.000079354395,0.00005223558,0.000048114216],"genre_scores_gemma":[0.03960988,0.9584597,0.000012680447,0.00031920912,0.00007940033,0.0011806552,0.000083595856,0.0000664314,0.00018844442],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9900448,0.0059651798,0.0021818017,0.0009911995,0.0003940938,0.00042295308],"domain_scores_gemma":[0.992188,0.003598701,0.0014155621,0.0018674957,0.0007672142,0.00016305839],"candidate_categories":["metaepi_narrow","metaepi_broad"],"consensus_categories":[],"category_scores_codex":[0.0028692165,0.0011944902,0.01662955,0.00043164304,0.0004280811,0.0001761299,0.00043853282,0.00025336182,0.0000433759],"category_scores_gemma":[0.00007718292,0.0006130736,0.0020638837,0.0024092372,0.00011791603,0.00010696244,0.00024085546,0.0009350306,0.00001276401],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014034614,0.0013927222,0.0012962306,0.6269502,0.368047,0.000012492091,0.0016777263,0.000032844044,0.00006761576,0.00016913383,0.00002320769,0.00019047305],"study_design_scores_gemma":[0.0014690888,0.0017607227,0.017702071,0.0887372,0.8791042,0.00016816612,0.00021019937,0.0000073117017,0.0000024674978,0.000010487524,0.010150352,0.0006777667],"about_ca_topic_score_codex":0.000009915531,"about_ca_topic_score_gemma":0.00004976937,"teacher_disagreement_score":0.538213,"about_ca_system_score_codex":0.00010389719,"about_ca_system_score_gemma":0.00014563878,"threshold_uncertainty_score":0.99963206},"labels":[],"label_agreement":null},{"id":"W2953439757","doi":"10.1016/j.eclinm.2019.06.013","title":"Rethink Respiratory Rate for Diagnosing Childhood Pneumonia","year":2019,"lang":"en","type":"article","venue":"EClinicalMedicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Pneumonia; Pediatrics; Child mortality; Scopus; Respiratory infection; Family medicine; Intensive care medicine; MEDLINE; Population; Environmental health; Respiratory system; Internal medicine","score_opus":0.0328333910056797,"score_gpt":0.34866856662188794,"score_spread":0.3158351756162082,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2953439757","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96986383,0.00043570457,0.00026107597,0.017302532,0.0023257695,0.0018554515,0.000016553893,0.00030198833,0.007637067],"genre_scores_gemma":[0.95695376,0.00009496278,0.00028835068,0.038178932,0.002043265,0.00012562021,0.000031693227,0.00007456606,0.0022088331],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9977555,0.00011540572,0.00082011364,0.00056763773,0.00028492103,0.00045637743],"domain_scores_gemma":[0.99684477,0.0016157059,0.00021175627,0.00074636284,0.00019733944,0.0003840647],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014383123,0.00025924336,0.0007337502,0.00018266878,0.00016591919,0.000016445018,0.00014139176,0.0002958338,0.0005438054],"category_scores_gemma":[0.00252461,0.00019643531,0.00032055588,0.00030441428,0.00017330245,0.000095240866,0.00005242062,0.0006505319,0.0006096819],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005414994,0.0018410207,0.7507708,0.0005966654,0.0005480989,0.00017750928,0.00063065725,0.00003380289,0.18643849,0.0017776395,0.03810296,0.018540885],"study_design_scores_gemma":[0.0069571016,0.0032940623,0.5744151,0.00054944475,0.0002719116,0.00006659739,0.000070241746,0.00012131757,0.0010890777,0.0006472901,0.41224715,0.00027073658],"about_ca_topic_score_codex":0.000004237991,"about_ca_topic_score_gemma":0.0000040315767,"teacher_disagreement_score":0.37414417,"about_ca_system_score_codex":0.00006765535,"about_ca_system_score_gemma":0.00030257646,"threshold_uncertainty_score":0.80104},"labels":[],"label_agreement":null},{"id":"W2955112665","doi":"10.1093/cid/ciz544","title":"Ribavirin and Interferon Therapy for Critically Ill Patients With Middle East Respiratory Syndrome: A Multicenter Observational Study","year":2019,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":257,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sunnybrook Hospital; University of Toronto; Western University","funders":"National Institutes of Health; Regeneron Pharmaceuticals; Gilead Sciences","keywords":"Medicine; Ribavirin; Internal medicine; Middle East respiratory syndrome; Marginal structural model; Odds ratio; Intensive care unit; Confounding; Hazard ratio; Confidence interval; Immunology; Coronavirus disease 2019 (COVID-19); Hepatitis C virus","score_opus":0.10965136161819945,"score_gpt":0.37192702063639865,"score_spread":0.2622756590181992,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2955112665","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99611235,0.0000768436,0.000060624527,0.00032891185,0.0004276304,0.0026622666,0.000085669286,0.00012341354,0.00012230007],"genre_scores_gemma":[0.988816,0.000011073099,0.000011031431,0.010570295,0.0001283897,0.0002772418,0.000036037523,0.00003933317,0.0001105715],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99834216,0.00015323017,0.00053241727,0.00048932986,0.00022994052,0.0002529552],"domain_scores_gemma":[0.99755347,0.00055084564,0.00010762292,0.00033478945,0.0011149643,0.00033831617],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015574803,0.00021837068,0.00046348808,0.00009476004,0.000142827,0.00004709178,0.00006491094,0.00010761245,0.00011088517],"category_scores_gemma":[0.0010773255,0.00015638095,0.00017598501,0.00012543412,0.00020848896,0.00016033284,0.00004809569,0.00022783413,0.000050386],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006515378,0.008129011,0.9887611,0.00008062802,0.00026842297,0.0000118053085,0.00005126814,0.0000031199918,0.000035068446,0.000024503855,0.0001995555,0.0017839713],"study_design_scores_gemma":[0.013089284,0.016330313,0.9659923,0.00012353991,0.00021307387,0.0000037047823,0.00012670865,0.000041570693,0.0000017379576,0.00003293724,0.0038520547,0.00019278484],"about_ca_topic_score_codex":0.000004161409,"about_ca_topic_score_gemma":0.00001583671,"teacher_disagreement_score":0.022768818,"about_ca_system_score_codex":0.000047541198,"about_ca_system_score_gemma":0.00013557807,"threshold_uncertainty_score":0.637703},"labels":[],"label_agreement":null},{"id":"W2955848087","doi":"10.1016/j.diabet.2019.06.003","title":"Factors associated with pneumococcal vaccination in 2040 people with type 2 diabetes: A cross-sectional study","year":2019,"lang":"en","type":"article","venue":"Diabetes & Metabolism","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Vaccination; Diabetes mellitus; Odds ratio; Logistic regression; Type 2 diabetes; Cross-sectional study; Waist; Cohort study; Cohort; Pneumococcal vaccine; Body mass index; Internal medicine; Pediatrics; Immunology; Streptococcus pneumoniae","score_opus":0.020185094158944025,"score_gpt":0.27978934587052773,"score_spread":0.2596042517115837,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2955848087","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974196,0.000116379306,0.0000010030637,0.000048148595,0.0005159347,0.0012260836,0.00001669126,0.00012951517,0.0005266739],"genre_scores_gemma":[0.9989128,0.0000030352035,0.0000031926143,0.00015479936,0.00010854254,0.00011726835,0.00009859313,0.00005188166,0.0005498943],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9979314,0.00014828137,0.00037525556,0.00048982044,0.0005235308,0.0005316843],"domain_scores_gemma":[0.99878734,0.00019019737,0.00017130731,0.00032151036,0.00036750536,0.0001621417],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038482496,0.000322538,0.0006552484,0.00039665197,0.00013408558,0.00008381364,0.000114537084,0.00017048555,0.00044499934],"category_scores_gemma":[0.00019066375,0.00021444785,0.00009025966,0.0012032393,0.00003963602,0.00030301552,0.000036659174,0.00046180736,0.00009434793],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000347674,0.00096695626,0.98405576,0.000026834601,0.000304798,0.0000030905028,0.0004707257,0.00013810444,0.013906972,0.000019411716,0.000007937065,0.00006462418],"study_design_scores_gemma":[0.003751743,0.0010334146,0.9929135,0.00004848725,0.00017470383,6.849921e-7,0.00019115614,0.00014972832,0.0011033716,0.000015286,0.00033975666,0.00027817412],"about_ca_topic_score_codex":0.000021145192,"about_ca_topic_score_gemma":0.00021660513,"teacher_disagreement_score":0.0128036,"about_ca_system_score_codex":0.0001388724,"about_ca_system_score_gemma":0.00015290325,"threshold_uncertainty_score":0.87449294},"labels":[],"label_agreement":null},{"id":"W2956862806","doi":"10.1177/2333794x19862462","title":"Bacteremia in Diarrheal Children With Severe Pneumonia","year":2019,"lang":"en","type":"article","venue":"Global Pediatric Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Global Affairs Canada; Department for International Development; Department for International Development, UK Government; International Centre for Diarrhoeal Disease Research, Bangladesh; Styrelsen för Internationellt Utvecklingssamarbete","keywords":"Medicine; Diarrhea; Pneumonia; Bacteremia; Etiology; Antibiotics; Pediatrics; Blood culture; Intensive care medicine; Internal medicine; Microbiology","score_opus":0.006442750308482041,"score_gpt":0.26713411115283786,"score_spread":0.26069136084435585,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2956862806","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9902444,0.00020211379,0.000009433495,0.003289628,0.00023468249,0.0008112123,0.000058780737,0.00010444186,0.005045301],"genre_scores_gemma":[0.9959385,0.000258896,0.00006876598,0.0031358113,0.00040951255,0.000012457239,0.000032356813,0.000015952039,0.00012777075],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99839634,0.00007467496,0.0003345591,0.0003522949,0.00028077018,0.0005613657],"domain_scores_gemma":[0.99908936,0.000021442032,0.00011184557,0.00031329136,0.000042430354,0.00042161148],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018006374,0.00018453845,0.0003840765,0.00012274299,0.00007081162,0.000014254904,0.000073537005,0.0001235546,0.00011367531],"category_scores_gemma":[0.000019703259,0.00014170453,0.000061650055,0.00081684074,0.000020637168,0.00008676248,0.000029377046,0.00034693576,0.0004827216],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002883481,0.00013596183,0.9965227,0.000092515205,0.000015424272,0.00001507208,0.00003493869,0.000025903626,0.000010851456,0.00006019929,0.0008934418,0.0021641545],"study_design_scores_gemma":[0.001771188,0.0007021809,0.99408805,0.000027952878,0.000026657837,0.0005287864,0.000018973547,0.000008424239,7.2769546e-7,0.000018597448,0.002660224,0.00014820427],"about_ca_topic_score_codex":0.000680414,"about_ca_topic_score_gemma":0.00025771093,"teacher_disagreement_score":0.005694071,"about_ca_system_score_codex":0.0004966686,"about_ca_system_score_gemma":0.0013067685,"threshold_uncertainty_score":0.62045705},"labels":[],"label_agreement":null},{"id":"W2957045816","doi":"10.1038/s41467-019-11005-2","title":"Microinvasion by Streptococcus pneumoniae induces epithelial innate immunity during colonisation at the human mucosal surface","year":2019,"lang":"en","type":"article","venue":"Nature Communications","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"University College London; Wellcome Trust; Medical Research Council; Wellcome; National Institute for Health and Care Research; Department of Health and Social Care; Government of the United Kingdom; University College London Hospitals NHS Foundation Trust; Bill and Melinda Gates Foundation","keywords":"Colonisation; Innate immune system; Streptococcus pneumoniae; Microbiology; Immunity; Immunology; Biology; Immune system; Colonization; Antibiotics","score_opus":0.018557190822159175,"score_gpt":0.3041152719492739,"score_spread":0.2855580811271147,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2957045816","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98266447,0.00128953,6.249559e-7,0.012161667,0.00023434503,0.00093934004,0.000100041994,0.00013677347,0.0024732312],"genre_scores_gemma":[0.9966513,0.00033138244,0.00002561081,0.00061312795,0.000050212206,0.000051289604,0.0003634021,0.000030435698,0.001883226],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986124,0.0003422525,0.0003230572,0.00023310908,0.00024469505,0.00024448588],"domain_scores_gemma":[0.99708086,0.0002582401,0.00020113275,0.0021883738,0.00017992758,0.00009145938],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0003206118,0.0001937878,0.00022688114,0.00008178757,0.0016230767,0.000048579324,0.000649689,0.0003950937,0.00011197748],"category_scores_gemma":[0.00009201927,0.0001430657,0.00013040227,0.00037393425,0.0002542449,0.0001325714,0.0005211238,0.0018877842,0.00021582178],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008653958,0.00019795418,0.110234335,0.000019328456,0.00005190039,7.0806885e-7,0.0003697169,0.000013813746,0.8876499,0.00017797227,0.0012098288,0.00006589839],"study_design_scores_gemma":[0.0014409359,0.00016394048,0.73431253,0.000096903976,0.00012338064,0.00004442514,0.0004607702,0.000053773,0.15204778,0.000045958728,0.11093334,0.00027625047],"about_ca_topic_score_codex":0.0000823399,"about_ca_topic_score_gemma":0.0005476585,"teacher_disagreement_score":0.7356021,"about_ca_system_score_codex":0.00028010926,"about_ca_system_score_gemma":0.00011326149,"threshold_uncertainty_score":0.99967664},"labels":[],"label_agreement":null},{"id":"W2957964124","doi":"10.1371/journal.pone.0220204","title":"Effect of tobacco smoking on the risk of developing community acquired pneumonia: A systematic review and meta-analysis","year":2019,"lang":"en","type":"review","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":128,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Medical Research Council; National Institute for Health and Care Research","keywords":"Meta-analysis; Medicine; Pneumonia; Environmental health; MEDLINE; Internal medicine; Biology","score_opus":0.23682047318292473,"score_gpt":0.35838071286742423,"score_spread":0.1215602396844995,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2957964124","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0019143343,0.99237496,0.0000034696934,0.000130876,0.000011379639,0.0053035906,0.00009658384,0.000022731763,0.00014205644],"genre_scores_gemma":[0.002489392,0.9965158,0.00001250557,0.00023009471,0.000009812982,0.00059505965,0.000023051967,0.00003572968,0.000088568006],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99215466,0.0055906177,0.0013625179,0.0002327241,0.00048870005,0.00017077522],"domain_scores_gemma":[0.99133795,0.0049721333,0.0018656712,0.00156961,0.00019451119,0.00006012074],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0040008775,0.000444798,0.0134685375,0.00036184973,0.00016466675,0.000012054274,0.00028930823,0.00020905198,0.000045374953],"category_scores_gemma":[0.0024315906,0.00020112233,0.0026467498,0.0011308785,0.00009792659,0.000028861336,0.00013252212,0.0006875878,0.000015515001],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000016177314,0.00015073454,0.000104998726,0.7095964,0.28986827,9.847968e-7,0.000024091469,1.2870711e-7,0.0000075636717,0.000010043182,0.0000017826209,0.00023338418],"study_design_scores_gemma":[0.000073853524,0.00030095258,0.00002167485,0.22958393,0.7696456,0.000007833084,0.0000055371083,0.0000010256106,0.000035749617,0.0000010529783,0.00020268248,0.000120121935],"about_ca_topic_score_codex":0.00003821446,"about_ca_topic_score_gemma":0.000008982527,"teacher_disagreement_score":0.48001245,"about_ca_system_score_codex":0.00008494176,"about_ca_system_score_gemma":0.00011917098,"threshold_uncertainty_score":0.92068225},"labels":[],"label_agreement":null},{"id":"W2958882411","doi":"10.1186/s40168-019-0716-4","title":"The association between pneumococcal vaccination, ethnicity, and the nasopharyngeal microbiota of children in Fiji","year":2019,"lang":"en","type":"article","venue":"Microbiome","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Infection and Immunity; Murdoch Children's Research Institute; University of Melbourne; Children’s Hospital of Wisconsin Research Institute","keywords":"Moraxella catarrhalis; Streptococcus pneumoniae; Pneumococcal conjugate vaccine; Biology; Haemophilus influenzae; Carriage; Microbiology; Vaccination; Moraxella; Immunology; Medicine; Antibiotics; Bacteria; Genetics","score_opus":0.005931330397063322,"score_gpt":0.24610399013524897,"score_spread":0.24017265973818566,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2958882411","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99251884,0.00031461977,0.000002111968,0.0058312127,0.00012471632,0.0006646241,0.000031308675,0.000015685608,0.0004968505],"genre_scores_gemma":[0.99844724,0.00010013368,0.000004435905,0.00027529118,0.00007602725,0.000008764978,0.000025855805,0.000010611017,0.0010516691],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991323,0.00013556235,0.00029739155,0.00015450317,0.00009366516,0.00018661346],"domain_scores_gemma":[0.99920636,0.00031667654,0.00015504932,0.00020915715,0.000081616614,0.00003115229],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00066164363,0.00010073626,0.00025681677,0.000103112696,0.00011690355,0.000022757476,0.00010932293,0.0001240338,0.00002722385],"category_scores_gemma":[0.000072249575,0.000056812743,0.00008147751,0.00031038804,0.00007432727,0.0000467353,0.000071990304,0.00025567607,0.000042117386],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026378468,0.000035524892,0.5873167,0.000019053163,0.000094234965,3.319009e-7,0.00017524665,0.0000016416442,0.4115024,0.000077696954,0.00026043894,0.00049035513],"study_design_scores_gemma":[0.0028843158,0.00006547265,0.98574615,0.000034415905,0.00006954352,0.000023218005,0.00002245306,0.000008254361,0.007725952,0.00004437342,0.0033107032,0.000065173735],"about_ca_topic_score_codex":0.00009673913,"about_ca_topic_score_gemma":0.000043106425,"teacher_disagreement_score":0.40377644,"about_ca_system_score_codex":0.00010934815,"about_ca_system_score_gemma":0.00005069608,"threshold_uncertainty_score":0.23167564},"labels":[],"label_agreement":null},{"id":"W2962868134","doi":"10.1016/j.vaccine.2019.05.003","title":"Streptococcus pneumoniae serotype 3 is masking PCV13-mediated herd immunity in Canadian adults hospitalized with community acquired pneumonia: A study from the Serious Outcomes Surveillance (SOS) Network of the Canadian immunization research Network (CIRN)","year":2019,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Saint John Regional Hospital; Ottawa Hospital; McGill University Health Centre; University of Ottawa; McMaster University; Mount Sinai Hospital; Vancouver General Hospital; Public Health Ontario; Centre Hospitalier Universitaire de Sherbrooke; University of British Columbia; Izaak Walton Killam Health Centre; Centre hospitalier universitaire de Québec; Nova Scotia Health Authority; University of Toronto; Dalhousie University","funders":"Canadian Institutes of Health Research; Canadian Immunization Research Network","keywords":"Streptococcus pneumoniae; Medicine; Herd immunity; Serotype; Pneumonia; Pneumococcal conjugate vaccine; Community-acquired pneumonia; Pneumococcal pneumonia; Sputum; Sputum culture; Immunization; Immunology; Intensive care unit; Pneumococcal disease; Immunity; Blood culture; Internal medicine; Vaccination; Microbiology; Antibody; Antibiotics; Biology; Immune system; Tuberculosis","score_opus":0.017485265592718145,"score_gpt":0.281781464074964,"score_spread":0.2642961984822459,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2962868134","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9898704,0.00019727912,6.028651e-7,0.0046976195,0.000424379,0.0042377952,0.00013597094,0.000052346513,0.0003835555],"genre_scores_gemma":[0.9983596,0.000049532242,0.0000052205824,0.0009830582,0.00012061086,0.00012221983,0.00015421554,0.00007285334,0.0001326544],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99447256,0.0025752385,0.00070038094,0.0003869734,0.0005987482,0.0012660995],"domain_scores_gemma":[0.9954576,0.00083539577,0.00028061107,0.0022618247,0.00073408114,0.00043051282],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.002734034,0.00038856894,0.0008103295,0.00022896632,0.0016288346,0.0000857422,0.0008927556,0.0002692677,0.00016135692],"category_scores_gemma":[0.0004280971,0.00023715297,0.00012376484,0.0031498226,0.00009533944,0.00013146632,0.00026521474,0.0016256511,0.000044234075],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018361014,0.00021944864,0.99375284,0.000031538195,0.00028160083,0.000026209806,0.0033776865,0.0014612613,0.0002678195,0.0000068586382,0.0002540378,0.0001370887],"study_design_scores_gemma":[0.0036382428,0.0007676033,0.9908342,0.0004632606,0.00005665301,0.000007060773,0.0018886746,0.00059909484,0.000014061834,0.0000336792,0.0014486025,0.00024891336],"about_ca_topic_score_codex":0.97437155,"about_ca_topic_score_gemma":0.99811584,"teacher_disagreement_score":0.023744259,"about_ca_system_score_codex":0.00095767475,"about_ca_system_score_gemma":0.0021421625,"threshold_uncertainty_score":0.9996709},"labels":[],"label_agreement":null},{"id":"W2964727877","doi":"10.1186/s12879-019-4325-4","title":"Effectiveness of pneumococcal conjugate vaccination against invasive pneumococcal disease among children with and those without HIV infection: a systematic review and meta-analysis","year":2019,"lang":"en","type":"review","venue":"BMC Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Meta-analysis; Cochrane Library; Vaccination; Medical microbiology; Observational study; Pneumococcal conjugate vaccine; Pediatrics; Systematic review; Pneumococcal infections; Internal medicine; Randomized controlled trial; MEDLINE; Immunology; Streptococcus pneumoniae; Antibiotics; Biology","score_opus":0.03942938567524596,"score_gpt":0.32650153302509427,"score_spread":0.2870721473498483,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2964727877","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.017203368,0.966781,0.00009455634,0.000010595189,0.00005620496,0.014920282,0.000620421,0.0002073117,0.00010626757],"genre_scores_gemma":[0.0877512,0.9073055,0.0000027250876,0.000095100164,0.000049481245,0.0039600185,0.00061639736,0.00012398463,0.00009563869],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9942163,0.0022645777,0.0013941516,0.0011991487,0.00051097467,0.00041482924],"domain_scores_gemma":[0.9949953,0.001104283,0.0015539523,0.0011236409,0.0005004579,0.0007223647],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00064335484,0.001176925,0.010309023,0.0010806469,0.00026612042,0.00011460069,0.0001376957,0.00031839995,0.000049122664],"category_scores_gemma":[0.00088070444,0.00074368407,0.0029280048,0.0015587693,0.00029881482,0.0003334597,0.00015731607,0.0005133017,0.000022273218],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027287686,0.00035318406,0.2431176,0.66991264,0.086410135,0.000013292103,0.0000088102015,0.000024594498,0.0000015885909,0.000026402891,0.000002196851,0.000102281876],"study_design_scores_gemma":[0.00082475384,0.00029638846,0.23235105,0.06632021,0.69935745,0.00015843623,0.000002673754,0.000008397233,8.112996e-7,0.000006911645,0.00010248082,0.00057042827],"about_ca_topic_score_codex":0.000036696474,"about_ca_topic_score_gemma":0.00007318791,"teacher_disagreement_score":0.61294734,"about_ca_system_score_codex":0.00020850926,"about_ca_system_score_gemma":0.0009135874,"threshold_uncertainty_score":0.9995014},"labels":[],"label_agreement":null},{"id":"W2965127741","doi":"10.4103/lungindia.lungindia_518_16","title":"How a mild influenza B infection can kill: A case of pulmonary hemorrhage","year":2017,"lang":"en","type":"article","venue":"Lung India","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Office of the Chief Medical Examiner","funders":"","keywords":"Medicine; Bronchoalveolar lavage; Sore throat; Pneumonia; Streptococcus pneumoniae; Coinfection; Throat culture; Oseltamivir; Internal medicine; Pharyngitis; Immunology; Streptococcus; Lung; Antibiotics; Microbiology; Virus; Infectious disease (medical specialty)","score_opus":0.023429600079605904,"score_gpt":0.3104249154675489,"score_spread":0.286995315387943,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2965127741","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9928815,0.00007029798,0.000025262761,0.0008208315,0.00040135116,0.0002848764,0.000022515804,0.000060231974,0.00543317],"genre_scores_gemma":[0.998481,0.000011036048,0.000029836028,0.00048118518,0.00021043998,0.0000301267,0.0000054237985,0.000019578814,0.00073140237],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99933136,0.000027112643,0.00015920735,0.00017587363,0.00011267263,0.0001937742],"domain_scores_gemma":[0.9990357,0.000022646727,0.00013773642,0.00057999423,0.00008154145,0.0001423496],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009456848,0.0001269354,0.00022400999,0.00015134318,0.0003934278,0.00005098002,0.00006501279,0.00013701034,0.000028094553],"category_scores_gemma":[0.00017933933,0.00010859703,0.0001164377,0.000091678,0.00012333655,0.00014952247,0.000049108643,0.00023364638,0.000009257139],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002964011,0.00017935499,0.95313275,0.00031001325,0.000081794984,0.005170071,0.0003706479,0.0000031814814,0.035695728,0.000078398545,0.00024191017,0.004706531],"study_design_scores_gemma":[0.0010793253,0.00020245565,0.96865183,0.00014933186,0.00025312518,0.010517566,0.00008672053,0.000452922,0.007172434,0.00003534882,0.011198059,0.00020085872],"about_ca_topic_score_codex":0.0009321291,"about_ca_topic_score_gemma":0.00027395683,"teacher_disagreement_score":0.028523292,"about_ca_system_score_codex":0.000065940105,"about_ca_system_score_gemma":0.000096931595,"threshold_uncertainty_score":0.44284582},"labels":[],"label_agreement":null},{"id":"W2966649859","doi":"10.3389/fcimb.2019.00301","title":"Streptococcus pneumoniae Evades Host Cell Phagocytosis and Limits Host Mortality Through Its Cell Wall Anchoring Protein PfbA","year":2019,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Japan Society for the Promotion of Science; Secom Science and Technology Foundation; Kurata Memorial Hitachi Science and Technology Foundation; Asahi Glass Foundation; Takeda Science Foundation; Kobayashi International Scholarship Foundation; GlaxoSmithKline Japan; Institute of Genetics; Naito Foundation","keywords":"Streptococcus pneumoniae; Phagocytosis; Host (biology); Anchoring; Microbiology; Biology; Antibiotics; Psychology; Genetics","score_opus":0.014681259448456732,"score_gpt":0.24709169939756928,"score_spread":0.23241043994911254,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2966649859","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9924507,0.0022126012,0.00045849246,0.00014469086,0.0010735911,0.0014417679,0.000032949905,0.00008531095,0.0020998635],"genre_scores_gemma":[0.99707854,0.001167811,0.00013360365,0.0002860649,0.00013347302,0.00008618394,0.000054849017,0.000036069858,0.0010233913],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99815786,0.00018097981,0.00044012364,0.00067153876,0.00007122968,0.00047825856],"domain_scores_gemma":[0.99926883,0.000030208681,0.0001734571,0.0003067097,0.00008470063,0.00013606998],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00024086719,0.0003438834,0.0005853322,0.00027239343,0.00017888824,0.000039111124,0.00006705499,0.00044027407,0.000068947535],"category_scores_gemma":[0.000020438503,0.00031560307,0.00012247088,0.00028933142,0.00017492652,0.00023965337,0.00006952065,0.0005572657,0.000047227386],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018944513,0.00017025053,0.42311135,0.00026951337,0.000038444316,0.000009787429,0.00015561031,0.000005380022,0.5759533,0.0000065924933,0.00014742078,0.00011342006],"study_design_scores_gemma":[0.003272682,0.0010629451,0.10535898,0.0001736081,0.00015847896,0.000058907248,0.00020153275,0.00014365843,0.8444373,0.00003301389,0.044597946,0.0005009259],"about_ca_topic_score_codex":0.00011839921,"about_ca_topic_score_gemma":0.00002949883,"teacher_disagreement_score":0.31775236,"about_ca_system_score_codex":0.0001325724,"about_ca_system_score_gemma":0.00007765338,"threshold_uncertainty_score":0.9999296},"labels":[],"label_agreement":null},{"id":"W2966674500","doi":"10.1172/jci128865","title":"Innate and adaptive nasal mucosal immune responses following experimental human pneumococcal colonization","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Investigation","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Wellcome Trust; Medical Research Council; Bill and Melinda Gates Foundation","keywords":"Immunology; Innate immune system; Colonization; Immune system; Acquired immune system; Streptococcus pneumoniae; Microbiology; Pneumococcal infections; Biology; Medicine; Antibiotics","score_opus":0.0726633202950458,"score_gpt":0.4028023871286754,"score_spread":0.3301390668336296,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2966674500","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972177,0.0001506681,0.000059541104,0.0012092507,0.00089199154,0.00022734984,0.0000011012517,0.000019508383,0.00022284806],"genre_scores_gemma":[0.9985409,0.000016693939,0.0002856119,0.00053768646,0.00038238225,0.0000028695574,0.000004456952,0.00001588678,0.0002135615],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9980027,0.00031819553,0.0011166012,0.00014919067,0.00029081132,0.00012251877],"domain_scores_gemma":[0.9984957,0.00032812302,0.0006252493,0.00011455544,0.00020307547,0.00023331243],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001222716,0.000114034796,0.0004545022,0.00016254492,0.00011262684,0.000029584799,0.000053717547,0.00017700874,0.000028946757],"category_scores_gemma":[0.00080706086,0.000091647285,0.00022866833,0.00016137668,0.00016792145,0.00031625817,0.0000312563,0.00048658293,0.000015889993],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029859185,0.00014426568,0.37066013,0.000009837093,0.000098349265,0.0000372604,0.00019044573,0.000009344086,0.6279968,0.00025360155,0.00003614266,0.0002652364],"study_design_scores_gemma":[0.0038755822,0.0044447896,0.9522541,0.00027420014,0.00014842702,0.00021159128,0.00029952606,0.000498878,0.03677929,0.0004075164,0.0006783373,0.00012777517],"about_ca_topic_score_codex":0.000004530957,"about_ca_topic_score_gemma":0.0000012430005,"teacher_disagreement_score":0.5912175,"about_ca_system_score_codex":0.00005457851,"about_ca_system_score_gemma":0.0002635903,"threshold_uncertainty_score":0.3737268},"labels":[],"label_agreement":null},{"id":"W2967028695","doi":"10.1093/ofid/ofz362","title":"Homelessness in Adults With Invasive Pneumococcal Disease in Calgary, Canada","year":2019,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Children's Hospital; University of Calgary","funders":"Pfizer Canada; Pfizer","keywords":"Medicine; Pneumococcal disease; Gerontology; Pathogenic organism; Streptococcus pneumoniae; Microbiology; Antibiotics","score_opus":0.004486572612937955,"score_gpt":0.22803576635416814,"score_spread":0.2235491937412302,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2967028695","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9871809,0.00010718504,0.0000017775594,0.00079998525,0.00021194854,0.0020603146,0.00006793435,0.00004647743,0.009523484],"genre_scores_gemma":[0.9977899,0.00003601639,0.0000010516665,0.0013289201,0.000028063543,0.00041852597,0.000087737,0.0000407165,0.00026907126],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99834174,0.00007890259,0.0003078695,0.00048482404,0.00027916578,0.00050749385],"domain_scores_gemma":[0.99876595,0.00010608985,0.00008889469,0.00043856853,0.00008680632,0.00051369896],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000053831536,0.00026594562,0.0005018868,0.00024096703,0.000098322555,0.00006613569,0.0002010681,0.00006580009,0.00027204386],"category_scores_gemma":[0.00009965987,0.00021377379,0.00006767161,0.00061933446,0.00006483017,0.00031772116,0.00016196068,0.00026651437,0.00005501133],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00055397226,0.0007366699,0.9961456,0.00023673884,0.000034967754,0.0008398695,0.00007056136,0.0003759354,0.000117040116,0.00023660352,0.00015222971,0.0004997895],"study_design_scores_gemma":[0.0054673497,0.0004119203,0.99067783,0.0008418467,0.00005239269,0.000029443323,0.0004038072,0.00011216579,0.000040108178,0.0001112235,0.0015319961,0.00031993978],"about_ca_topic_score_codex":0.3613605,"about_ca_topic_score_gemma":0.9345342,"teacher_disagreement_score":0.5731737,"about_ca_system_score_codex":0.00053851696,"about_ca_system_score_gemma":0.003170007,"threshold_uncertainty_score":0.8717442},"labels":[],"label_agreement":null},{"id":"W2969219027","doi":"10.1155/2019/4578329","title":"The Presence of Cough and Tuberculosis: Active Case Finding Outcomes in the Philippines","year":2019,"lang":"en","type":"article","venue":"Tuberculosis Research and Treatment","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo; Public Health Ontario; University of Toronto","funders":"","keywords":"Medicine; Tuberculosis; Case finding; Active tuberculosis; Unit (ring theory); Family medicine; Environmental health; Pathology; Mycobacterium tuberculosis","score_opus":0.06047614530668203,"score_gpt":0.381258812871055,"score_spread":0.32078266756437296,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2969219027","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9871353,0.0010186553,1.5656434e-7,0.00918738,0.000033564917,0.0010993467,0.000019288767,0.000008132207,0.0014981718],"genre_scores_gemma":[0.9962958,0.002877022,0.0000040288555,0.00006745899,0.000025217461,0.00023080921,0.0000025103805,0.000008169319,0.0004889605],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99868417,0.00023321749,0.00018755038,0.00023616164,0.0003390025,0.0003198792],"domain_scores_gemma":[0.99795717,0.0014669813,0.00003069948,0.0003475916,0.00010383817,0.00009369751],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004925593,0.00013335969,0.000252745,0.00014288434,0.00039269347,0.000045071443,0.00006635103,0.000055683126,0.000020822074],"category_scores_gemma":[0.00014734273,0.000058269008,0.00006094043,0.00030197506,0.00030871993,0.00008027798,0.000059213686,0.00021418551,0.000010371129],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021588238,0.0010561866,0.95661104,0.000112002905,0.00060107844,0.0005902616,0.0046848934,0.000004295144,0.004629277,0.0008803999,0.0001070524,0.030507615],"study_design_scores_gemma":[0.003045477,0.0035099443,0.97204137,0.00018118409,0.00014588027,0.0018349085,0.010257532,0.00021683758,0.003289796,0.00042059273,0.0049063573,0.00015013471],"about_ca_topic_score_codex":0.0010661326,"about_ca_topic_score_gemma":0.0009433858,"teacher_disagreement_score":0.03035748,"about_ca_system_score_codex":0.00008914807,"about_ca_system_score_gemma":0.00006366951,"threshold_uncertainty_score":0.30203202},"labels":[],"label_agreement":null},{"id":"W2969252003","doi":"10.1093/jac/dkz286","title":"Comparison of antimicrobial resistance patterns in Streptococcus pneumoniae from respiratory and blood cultures in Canadian hospitals from 2007–16","year":2019,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Sciences Centre; Queen Elizabeth II Health Sciences Centre; Dalhousie University; Public Health Agency of Canada; University of Manitoba","funders":"Medicines Company; Sunovion; University of Manitoba; AstraZeneca; Bayer; Astellas Pharma US; Pfizer; Achaogen; Merck; Abbott Laboratories","keywords":"Streptococcus pneumoniae; Microbiology; Broth microdilution; Penicillin; Antimicrobial; Serotype; Trimethoprim; Antibiotic resistance; Sulfamethoxazole; Biology; Pneumococcal infections; Blood culture; Antibiotics; Minimum inhibitory concentration","score_opus":0.0089719682154193,"score_gpt":0.2833787313289529,"score_spread":0.2744067631135336,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2969252003","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99644744,0.00048232186,0.000004554454,0.0018151872,0.00040457686,0.00041363458,0.00019838597,0.000008132337,0.00022575681],"genre_scores_gemma":[0.9967141,0.0004524451,0.00010559968,0.0023587674,0.00026025053,0.000001508692,0.000014017293,0.00003631712,0.000056968423],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9979402,0.00010302737,0.0010570935,0.00029893426,0.00021277767,0.000387955],"domain_scores_gemma":[0.9986448,0.00008009783,0.00059388357,0.0002753018,0.00016003726,0.00024586945],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002621205,0.00026548983,0.0009888288,0.00050856627,0.000044699445,0.00003887308,0.00019043022,0.00028369392,0.0002157564],"category_scores_gemma":[0.00003840881,0.00023251551,0.00018072042,0.00026033283,0.00009985332,0.00017828737,0.000019503856,0.0006304884,0.0000062402105],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012391375,0.00023599408,0.53634155,0.000037691196,0.000083650084,0.000057394198,0.0005328184,0.000013618088,0.46068192,0.0000012899307,0.0017758257,0.000114332775],"study_design_scores_gemma":[0.005893509,0.00029653762,0.7623954,0.001297943,0.00006533463,0.000016619451,0.00020214326,0.0000043129958,0.22058134,0.000013092598,0.008999108,0.00023465484],"about_ca_topic_score_codex":0.024413139,"about_ca_topic_score_gemma":0.10177556,"teacher_disagreement_score":0.24010059,"about_ca_system_score_codex":0.00021140721,"about_ca_system_score_gemma":0.0005059634,"threshold_uncertainty_score":0.9820834},"labels":[],"label_agreement":null},{"id":"W2970261775","doi":"10.1164/ajrccm-conference.2019.199.1_meetingabstracts.a3685","title":"Survival with Optimal Medical Management in a Cohort of Severe Necrotizing Bacterial Lung Infection","year":2019,"lang":"en","type":"article","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôpital Maisonneuve-Rosemont","funders":"","keywords":"Cohort; Lung; Medicine; Intensive care medicine; Computer science; Internal medicine","score_opus":0.0069534591600317235,"score_gpt":0.26012968529973796,"score_spread":0.25317622613970625,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2970261775","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9573348,0.0000023989237,0.000291089,0.00020285897,0.00032643342,0.000544066,7.9039205e-7,0.000040868785,0.0412567],"genre_scores_gemma":[0.9988327,0.000019311261,0.00014712433,0.00011423267,0.00006974113,0.00002099373,0.0000078161,0.0000113437945,0.0007767555],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99909776,0.000036332167,0.00021576154,0.00016940104,0.00032562957,0.00015512484],"domain_scores_gemma":[0.99964654,0.000025441748,0.00004333809,0.00015722594,0.00003932805,0.00008814641],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00024598057,0.00009310066,0.00024120967,0.00014890135,0.000020756743,0.000006770548,0.00002704139,0.00008861914,0.0016114505],"category_scores_gemma":[0.000015383665,0.000066032175,0.000044825,0.00021837158,0.00003500036,0.0000706319,0.000036955335,0.00015549496,0.000030644103],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015499318,0.00016774281,0.9948692,0.00014915908,0.0001421096,0.000071051065,0.000039084523,0.00014165098,0.0033455885,0.00034040905,0.00005835399,0.0005207141],"study_design_scores_gemma":[0.0028932334,0.000338609,0.99256337,0.00020196018,0.00007776566,0.00018112834,0.00007069285,0.0006915346,0.00034401522,0.0000017758963,0.0025344181,0.00010149841],"about_ca_topic_score_codex":0.00019313021,"about_ca_topic_score_gemma":0.0001718156,"teacher_disagreement_score":0.041497886,"about_ca_system_score_codex":0.00006163456,"about_ca_system_score_gemma":0.000086081716,"threshold_uncertainty_score":0.9993012},"labels":[],"label_agreement":null},{"id":"W2970870663","doi":"10.1164/ajrccm-conference.2019.199.1_meetingabstracts.a6230","title":"Changes in Pneumococcal Serotypes in Adult Pneumococcal Pneumonia in Japan (2011 - 2017)","year":2019,"lang":"en","type":"article","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Pneumococcal pneumonia; Serotype; Pneumonia; Streptococcus pneumoniae; Pneumococcal disease; Medicine; Pneumococcal infections; Virology; Microbiology; Biology; Internal medicine; Antibiotics","score_opus":0.013765295430573612,"score_gpt":0.2659474532681833,"score_spread":0.2521821578376097,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2970870663","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97609967,0.000037857913,0.0000013012559,0.0057863076,0.00040576843,0.0011593696,0.0000056209356,0.000105055085,0.016399061],"genre_scores_gemma":[0.99521756,0.00012672975,0.000020281372,0.0012070854,0.00011570921,0.00017631467,0.000013565021,0.00004194612,0.003080807],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9977007,0.00012206078,0.00055885594,0.0006117184,0.00027969226,0.00072700233],"domain_scores_gemma":[0.9989997,0.0001071611,0.000081481456,0.0005184908,0.000078644895,0.00021453373],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00035508553,0.00033283228,0.00066635024,0.0010066828,0.00003597309,0.00002356103,0.000183105,0.0003556303,0.0010254235],"category_scores_gemma":[0.00008432535,0.0002802194,0.00010103202,0.00063551153,0.00008026732,0.00018875232,0.00009267659,0.00080568204,0.001841092],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000060029815,0.00038759434,0.68192923,0.00007963073,0.000009537258,0.000105624495,0.0003182167,0.00002806025,0.3158609,0.00023184418,0.000031335254,0.0009579869],"study_design_scores_gemma":[0.0026206987,0.0005161504,0.9887229,0.0002635303,0.000012636746,0.00011815997,0.0005135332,0.00042059078,0.0030167818,0.00007187837,0.0033987896,0.0003243372],"about_ca_topic_score_codex":0.001077236,"about_ca_topic_score_gemma":0.029541258,"teacher_disagreement_score":0.3128441,"about_ca_system_score_codex":0.000240747,"about_ca_system_score_gemma":0.00017077853,"threshold_uncertainty_score":0.999965},"labels":[],"label_agreement":null},{"id":"W2971027962","doi":"10.1164/ajrccm-conference.2019.199.1_meetingabstracts.a3692","title":"Prognosis of Mortality in Bacterial Community Acquired Pneumonia (CAP) Using Metabolomics (fatty Acids and Lipids) as Potential Biomarkers","year":2019,"lang":"en","type":"article","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Community-acquired pneumonia; Metabolomics; Pneumonia; Medicine; Bioinformatics; Biology; Internal medicine","score_opus":0.03025234127784842,"score_gpt":0.29966461466331457,"score_spread":0.26941227338546614,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2971027962","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977909,0.000027082087,0.000029981606,0.00014088202,0.00047553022,0.0005781698,0.000020445921,0.000043788277,0.00089324545],"genre_scores_gemma":[0.9993941,0.0000323497,0.00027607486,0.00015381095,0.00006320644,0.000009240813,0.000017742686,0.000017862216,0.000035619614],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99868244,0.00027797,0.0004279243,0.00019930447,0.00017786688,0.00023448351],"domain_scores_gemma":[0.99922657,0.00005173413,0.00012743702,0.00038232253,0.000085551226,0.00012639455],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000486561,0.00017527839,0.00048730095,0.00019325757,0.000102241414,0.000022403716,0.00009014947,0.00018258432,0.00020519615],"category_scores_gemma":[0.000070315094,0.00014603429,0.00011583241,0.00028329037,0.00019535291,0.00016419373,0.00012529222,0.00020218281,0.000009411647],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009341926,0.00022191492,0.46005908,0.00007249534,0.000120732046,0.0000031432394,0.000094898365,0.0000043646314,0.5390674,0.000022538625,0.000002365471,0.00023769986],"study_design_scores_gemma":[0.0020370714,0.0003115349,0.94606626,0.00006814074,0.00024626427,0.00006682512,0.00043059094,0.0008509706,0.04947701,0.000037635862,0.00024997952,0.00015770737],"about_ca_topic_score_codex":0.0017015014,"about_ca_topic_score_gemma":0.00018507341,"teacher_disagreement_score":0.48959035,"about_ca_system_score_codex":0.00005094817,"about_ca_system_score_gemma":0.00013635104,"threshold_uncertainty_score":0.59551054},"labels":[],"label_agreement":null},{"id":"W2971320978","doi":"10.1164/ajrccm-conference.2019.199.1_meetingabstracts.a3112","title":"Effect of Pioglitazone Therapy on Alveolar Macrophage Size in a Patient with Refractory Autoimmune Pulmonary Alveolar Proteinosis","year":2019,"lang":"en","type":"article","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Alveolar macrophage; Refractory (planetary science); Medicine; Pulmonary alveolar proteinosis; Pioglitazone; Immunology; Macrophage; Pathology; Internal medicine; Lung; Biology; Endocrinology","score_opus":0.004068919466677464,"score_gpt":0.2352703645908687,"score_spread":0.23120144512419125,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2971320978","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98921275,0.00039975316,0.000003454398,0.00024074285,0.00010608342,0.0022671379,0.000005925241,0.00008477234,0.007679387],"genre_scores_gemma":[0.99819463,0.000077069075,0.000041172552,0.00054832856,0.000024246065,0.0001877319,0.000005609949,0.00004127993,0.0008799253],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99837095,0.00024936502,0.0003671662,0.00034314746,0.00037595115,0.00029344903],"domain_scores_gemma":[0.9988322,0.0002851036,0.00013331344,0.0005814237,0.00007024914,0.00009770175],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003262392,0.00026490088,0.0005509663,0.00021063893,0.00004711362,0.000007269473,0.00008494863,0.00015615938,0.0006111295],"category_scores_gemma":[0.000063875574,0.00015733085,0.00016080574,0.00038676333,0.000074674754,0.00009623257,0.000027890432,0.00041853584,0.00011939153],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00252912,0.0014790829,0.14586714,0.00028334768,0.00015518755,0.0003209214,0.0003068427,0.00003290881,0.8260372,0.000022180906,0.00002698722,0.02293902],"study_design_scores_gemma":[0.0071175275,0.044478677,0.54610085,0.0008486761,0.00007173009,0.00018096923,0.000097903096,0.000117331714,0.38913754,0.000008041544,0.011457537,0.00038324564],"about_ca_topic_score_codex":0.00020033582,"about_ca_topic_score_gemma":0.000004601886,"teacher_disagreement_score":0.43689972,"about_ca_system_score_codex":0.00010906732,"about_ca_system_score_gemma":0.0000891366,"threshold_uncertainty_score":0.669144},"labels":[],"label_agreement":null},{"id":"W2972612821","doi":"","title":"Vaccine strategies for prevention of community-acquired pneumonia in Canada: Who would benefit most from pneumococcal immunization?","year":2019,"lang":"en","type":"review","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Jewish General Hospital; Cégep de l'Outaouais; Hôpital Saint-Luc; McGill University; McGill University Health Centre; McMaster University; Pfizer (Canada); Memorial University of Newfoundland; College of Family Physicians of Canada; University of Calgary; Université de Sherbrooke; University of Toronto","funders":"","keywords":"Medicine; Vaccination; Pneumococcal polysaccharide vaccine; Pneumococcal conjugate vaccine; Pneumococcal pneumonia; Immunization; Pneumococcal disease; Pneumococcal vaccine; Pneumonia; Advisory committee; Population; Community-acquired pneumonia; Pneumococcal infections; Pediatrics; Immunology; Family medicine; Streptococcus pneumoniae; Environmental health; Internal medicine; Antibiotics; Antigen","score_opus":0.07644798056821699,"score_gpt":0.31553672905308244,"score_spread":0.23908874848486544,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2972612821","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.04678007,0.9399833,0.00006061758,0.00032070375,0.0009351945,0.009903756,0.0012206605,0.00007212153,0.0007235481],"genre_scores_gemma":[0.03369421,0.95714486,0.000013503808,0.00016885147,0.00018699047,0.004802736,0.0031288725,0.0001431897,0.0007168128],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9974943,0.00028587424,0.0012169086,0.0002823375,0.00025832068,0.00046225026],"domain_scores_gemma":[0.9976049,0.00044604516,0.00067338336,0.00086989003,0.00025156792,0.00015420391],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003276985,0.00044744622,0.0023272915,0.00036332992,0.00013885538,0.000034766897,0.00035924782,0.00057385414,0.000028280252],"category_scores_gemma":[0.00016654661,0.0003877084,0.00033038083,0.00080265955,0.00003562404,0.00015624469,0.00011817807,0.00090719,0.0000032499725],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034869438,0.00037694888,0.0028400416,0.015734987,0.0006609995,0.0000065604377,0.00011053863,0.000047815818,0.00006626612,0.00016130577,0.00021903864,0.9797406],"study_design_scores_gemma":[0.0019089602,0.00016161038,0.24887861,0.0061723446,0.002139581,0.00003117953,0.00045189497,0.000015407411,0.000016161715,0.0001772732,0.7395086,0.0005383379],"about_ca_topic_score_codex":0.22992852,"about_ca_topic_score_gemma":0.43682307,"teacher_disagreement_score":0.9792023,"about_ca_system_score_codex":0.00095000234,"about_ca_system_score_gemma":0.0027795827,"threshold_uncertainty_score":0.9998575},"labels":[],"label_agreement":null},{"id":"W2974476478","doi":"","title":"Disparities in Effectiveness of Pneumococcal Vaccine in Industrialized and Developing Countries: Is Vaccination Closing the Gap?.","year":2018,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Incidence (geometry); Pneumonia; Vaccination; Pediatrics; Meningitis; Pneumococcal disease; Developed country; Developing country; Pneumococcal vaccine; Streptococcus pneumoniae; Pneumococcal pneumonia; Demography; Population; Environmental health; Immunology; Internal medicine","score_opus":0.03761864652417944,"score_gpt":0.291667750699566,"score_spread":0.25404910417538656,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2974476478","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99530876,0.00010900602,0.00006914289,0.0028518045,0.0001911084,0.0010862472,0.0000031218622,0.000015318255,0.00036549955],"genre_scores_gemma":[0.99903166,0.0000893473,0.0000059765616,0.0003079788,0.000088633,0.0004518506,0.0000019855665,0.000008936931,0.000013641348],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99910086,0.00015659978,0.00026821738,0.00015085006,0.000115240706,0.00020823402],"domain_scores_gemma":[0.9994138,0.00027561584,0.00007105416,0.00011280949,0.000088501314,0.000038256414],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009394273,0.00009404714,0.00025705592,0.00021241493,0.00006918929,0.000018048264,0.000043829074,0.00010539271,0.0000069898247],"category_scores_gemma":[0.00034750684,0.00006609773,0.000023778155,0.0004149771,0.0000625364,0.00010045292,0.000033829117,0.00015953774,8.945656e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034102358,0.00006119378,0.98980415,0.0002721892,0.000030796593,0.0000050372437,0.00045384216,0.000002817112,0.0015315805,0.0013966021,0.0000104628225,0.0060903337],"study_design_scores_gemma":[0.003304331,0.00005026597,0.9863212,0.00022826123,0.00002412054,0.00001568066,0.000054703338,0.000018485496,0.008378598,0.0005562972,0.0009769088,0.000071107475],"about_ca_topic_score_codex":0.00023162107,"about_ca_topic_score_gemma":0.00020768975,"teacher_disagreement_score":0.006847017,"about_ca_system_score_codex":0.00018372883,"about_ca_system_score_gemma":0.000106368665,"threshold_uncertainty_score":0.26953873},"labels":[],"label_agreement":null},{"id":"W2974874406","doi":"10.3881/j.issn.1000-503x.2018.01.006","title":"Role of Statins in Treatment and Prevention of Community-acquired Pneumonia:A Meta-analysis.","year":2018,"lang":"en","type":"review","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Statin; Medicine; Cochrane Library; Meta-analysis; Internal medicine","score_opus":0.21180841251917198,"score_gpt":0.37959742052178297,"score_spread":0.16778900800261098,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2974874406","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0057820957,0.99119663,0.000003886249,0.000029717608,0.000024647732,0.0020215209,0.0001364489,0.000014113082,0.00079093967],"genre_scores_gemma":[0.015269357,0.9812211,0.000021921884,0.000014728206,0.000022565857,0.0027274708,0.00012615442,0.000023642266,0.00057307514],"study_design_codex":"design_other","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99786645,0.0007845763,0.0008538464,0.0001665229,0.00013885986,0.00018971565],"domain_scores_gemma":[0.9984766,0.00019496543,0.00060495327,0.0005469547,0.00007671237,0.00009978722],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006370703,0.00025471405,0.0035590664,0.0007033907,0.00004451395,0.000005832455,0.00008428482,0.00017564815,0.00003068322],"category_scores_gemma":[0.000074274074,0.00016570317,0.0015974453,0.00075915107,0.00014139972,0.000036687048,0.00004561564,0.00014785654,0.0000015748517],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011573143,0.0010279727,0.0005116233,0.0056959777,0.11791949,0.0000023218236,0.0003653662,8.3411175e-7,0.000022014332,0.000020145224,0.000008462456,0.8744142],"study_design_scores_gemma":[0.00052446284,0.00047664947,0.024146825,0.00022842924,0.58324236,0.000020424406,0.00009716816,0.0000013466798,0.000034545294,0.00007567489,0.39098015,0.00017196871],"about_ca_topic_score_codex":0.00022565796,"about_ca_topic_score_gemma":0.0004926703,"teacher_disagreement_score":0.87424225,"about_ca_system_score_codex":0.00010653653,"about_ca_system_score_gemma":0.000107386484,"threshold_uncertainty_score":0.6757179},"labels":[],"label_agreement":null},{"id":"W2977322360","doi":"10.1164/rccm.201908-1581st","title":"Diagnosis and Treatment of Adults with Community-acquired Pneumonia. An Official Clinical Practice Guideline of the American Thoracic Society and Infectious Diseases Society of America","year":2019,"lang":"en","type":"article","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3569,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Center for Advancing Translational Sciences; Centers for Disease Control and Prevention; Shionogi; Sunovion; University of Washington; Vlaamse regering; University of Connecticut; McMaster University; Gilead Sciences; Vanderbilt University; AstraZeneca; Infectious Diseases Society of America; Insmed; Massachusetts General Hospital; Savara Pharmaceuticals; GlaxoSmithKline; Grifols; University of Pittsburgh; National Heart, Lung, and Blood Institute; Pfizer","keywords":"Medicine; Guideline; Intensive care medicine; Community-acquired pneumonia; Multidisciplinary approach; Pneumonia; Grading (engineering); Epidemiology; MEDLINE; Empiric therapy; Clinical trial; Family medicine; Alternative medicine; Pathology; Internal medicine","score_opus":0.03159986489540879,"score_gpt":0.3930292386609833,"score_spread":0.36142937376557455,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2977322360","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940378,0.0026990124,0.00013891546,0.0026274489,0.00009167144,0.00030060328,0.000046346126,0.000010460239,0.000047749054],"genre_scores_gemma":[0.99243,0.0026219578,0.00078830664,0.003894866,0.00022967743,0.0000079014335,0.0000033663403,0.00002273527,0.0000012280855],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99707097,0.00090459187,0.0011053702,0.00022411367,0.00048852037,0.00020642666],"domain_scores_gemma":[0.9948283,0.0019769084,0.0011637416,0.0003941264,0.0012371092,0.00039980578],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00056347786,0.00025019114,0.001412474,0.000085546126,0.00016896045,0.0000073530136,0.00010575435,0.00006401147,0.000009125629],"category_scores_gemma":[0.0007922534,0.00014137421,0.00027766186,0.00048101344,0.006740105,0.00015005877,0.00005875148,0.00038132898,8.4617696e-8],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015916119,0.0012453476,0.7346826,0.00047809834,0.0004146655,0.00001585874,0.0045526447,0.0000059217996,0.0043803104,0.00001770125,0.00006671566,0.25254852],"study_design_scores_gemma":[0.0062618954,0.15669534,0.6681431,0.0017623309,0.0037229266,0.0006774573,0.14101064,0.00009112698,0.00071703957,0.000019164214,0.020582467,0.0003165095],"about_ca_topic_score_codex":0.0003469282,"about_ca_topic_score_gemma":0.000023945619,"teacher_disagreement_score":0.25223202,"about_ca_system_score_codex":0.000048490878,"about_ca_system_score_gemma":0.00031902455,"threshold_uncertainty_score":0.995963},"labels":[],"label_agreement":null},{"id":"W2979412043","doi":"10.1074/jbc.ra119.010280","title":"Molecular analysis of an enigmatic Streptococcus pneumoniae virulence factor: The raffinose-family oligosaccharide utilization system","year":2019,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Raffinose; Streptococcus pneumoniae; Virulence factor; Virulence; Microbiology; Oligosaccharide; Biology; Gene; Genetics; Biochemistry","score_opus":0.03315665136399682,"score_gpt":0.2935866465684651,"score_spread":0.2604299952044683,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2979412043","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99875474,0.00022060909,0.00020005241,0.00007857048,0.000073935895,0.00015195474,0.000019596027,0.000019932137,0.000480592],"genre_scores_gemma":[0.9997195,0.000056021072,0.000014992503,0.00012037632,0.000059276914,0.0000035688588,0.000008734273,0.0000060450784,0.000011501379],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99868554,0.0000910536,0.00062523654,0.00015744346,0.0002896005,0.00015115611],"domain_scores_gemma":[0.9986368,0.00011054492,0.0005531962,0.0003208251,0.00024251075,0.00013611566],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002692624,0.00014047575,0.00053855986,0.000086257685,0.000046220575,0.000015552641,0.00021732129,0.00018618107,0.00011036824],"category_scores_gemma":[0.00014084636,0.00007384612,0.0003895101,0.0004743944,0.00008502039,0.000058268597,0.000030764404,0.00030611886,0.000005289454],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026777956,0.00012510897,0.051691517,0.00009739637,0.00062979077,0.000033028533,0.000039988394,0.00058723777,0.94626516,0.0000121394205,0.0000029894104,0.0004888567],"study_design_scores_gemma":[0.0006974512,0.0006331663,0.3231264,0.00020578373,0.001374679,0.00018376234,0.0010155311,0.0037255445,0.6685585,0.000013997852,0.00029098964,0.00017422743],"about_ca_topic_score_codex":0.0000022709219,"about_ca_topic_score_gemma":2.6596894e-7,"teacher_disagreement_score":0.2777067,"about_ca_system_score_codex":0.00007630434,"about_ca_system_score_gemma":0.0000944013,"threshold_uncertainty_score":0.30113572},"labels":[],"label_agreement":null},{"id":"W29802411","doi":"","title":"Outpatient treatment of community-acquired pneumonia: evolving trends and a focus on fluoroquinolones.","year":2006,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Community-acquired pneumonia; Pneumonia; Observational study; Receipt; Emergency department; Retrospective cohort study; Antibiotics; Logistic regression; Population; Internal medicine; Emergency medicine; Pediatrics; Intensive care medicine; Environmental health","score_opus":0.031100748753313968,"score_gpt":0.2520218135387033,"score_spread":0.2209210647853893,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W29802411","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98697823,0.0003536687,0.0000038360017,0.0016920324,0.0001224637,0.0003887621,0.000015445978,0.0000705569,0.010374991],"genre_scores_gemma":[0.9982821,0.000032982007,0.000008638929,0.00009290975,0.00007732222,0.0005924151,0.00001322478,0.00001637598,0.0008840289],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9991613,0.00009160051,0.00024006885,0.00011736726,0.00013850248,0.0002511733],"domain_scores_gemma":[0.9993791,0.00007700578,0.00008516758,0.00030680784,0.000046248828,0.000105668085],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008796239,0.00014643477,0.00030168114,0.00025013226,0.00015772386,0.000011134993,0.000037308386,0.000083851366,0.000010073697],"category_scores_gemma":[0.000026075575,0.00011133473,0.00009594083,0.00019966323,0.0001067426,0.000039818045,0.000019998115,0.00008472201,0.00000294975],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015886554,0.0037732292,0.19179586,0.00006751113,0.00018234874,0.000035904406,0.00097431976,0.000015670526,0.012286284,0.00024438114,0.00043365566,0.79003197],"study_design_scores_gemma":[0.0017427685,0.0012117937,0.9864395,0.00001641141,0.00011655268,0.000037915433,0.00006485481,0.000013793121,0.005214017,0.000074780466,0.0049757375,0.00009187935],"about_ca_topic_score_codex":0.00047199315,"about_ca_topic_score_gemma":0.000116890005,"teacher_disagreement_score":0.79464364,"about_ca_system_score_codex":0.00014890947,"about_ca_system_score_gemma":0.000015182402,"threshold_uncertainty_score":0.45400986},"labels":[],"label_agreement":null},{"id":"W2980377752","doi":"10.33321/cdi.2019.43.50","title":"Invasive Pneumococcal Disease Surveillance, 1 January to 31 March 2018","year":2019,"lang":"en","type":"article","venue":"Communicable Diseases Intelligence","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"NSW Health Pathology; Queensland Health","keywords":"Pneumococcal disease; Pneumococcal conjugate vaccine; Serotype; Quarter (Canadian coin); Medicine; Conjugate vaccine; Streptococcus pneumoniae; Pediatrics; Virology; Immunization; Immunology; Biology; Antibody; Microbiology; Geography; Antibiotics","score_opus":0.02511685880564652,"score_gpt":0.3081714611163915,"score_spread":0.283054602310745,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2980377752","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9677308,0.0022480248,0.00038871213,0.0037976196,0.0007402937,0.0020878532,0.00024337193,0.00028837717,0.022474952],"genre_scores_gemma":[0.9922425,0.0008878428,0.000085291824,0.0030087666,0.00010725765,0.0001810006,0.0001080284,0.00003859254,0.0033407104],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99809784,0.00018041492,0.0004035494,0.0004539393,0.0003473092,0.00051692803],"domain_scores_gemma":[0.99583185,0.00057838915,0.000074795265,0.0022135861,0.00021720976,0.0010842008],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00016465985,0.00028178256,0.00046578987,0.00021954898,0.0002462199,0.000056099838,0.0007166905,0.00008320455,0.0008104153],"category_scores_gemma":[0.00059922336,0.00025184307,0.00027025852,0.0006135728,0.00022948132,0.00015301346,0.00062442885,0.0004011283,0.004195479],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006581655,0.0012915403,0.96661794,0.00046020557,0.00015687507,0.00016923169,0.00015172629,0.0010059975,0.012700367,0.00076948735,0.011645218,0.0043732165],"study_design_scores_gemma":[0.00044702637,0.0007442303,0.82273483,0.00054290256,0.00014185943,0.000038662638,0.00047464686,0.00071375293,0.0010041962,0.0007692135,0.17173336,0.00065533584],"about_ca_topic_score_codex":0.000046724886,"about_ca_topic_score_gemma":0.000027777089,"teacher_disagreement_score":0.16008815,"about_ca_system_score_codex":0.00015527157,"about_ca_system_score_gemma":0.00059976854,"threshold_uncertainty_score":0.9999934},"labels":[],"label_agreement":null},{"id":"W2980450973","doi":"10.33321/cdi.2019.43.51","title":"Invasive Pneumococcal Disease Surveillance, 1 April to 30 June 2018","year":2019,"lang":"en","type":"article","venue":"Communicable Diseases Intelligence","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"NSW Health Pathology; Queensland Health","keywords":"Pneumococcal disease; Serotype; Pneumococcal conjugate vaccine; Quarter (Canadian coin); Medicine; Conjugate vaccine; Streptococcus pneumoniae; Pediatrics; Pneumococcal infections; Virology; Immunization; Immunology; Biology; Microbiology; Antibody; Geography; Antibiotics","score_opus":0.02353060756502086,"score_gpt":0.2988714571849017,"score_spread":0.27534084961988087,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2980450973","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.972772,0.0027507448,0.0008309413,0.004552369,0.0015037394,0.0019576368,0.00023075525,0.00044583977,0.014956],"genre_scores_gemma":[0.99147373,0.00087097014,0.00006672512,0.0030760346,0.00011645967,0.00012834887,0.00007055957,0.000045837205,0.004151353],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981155,0.00017520855,0.00041683426,0.00044952615,0.00034310538,0.0004998392],"domain_scores_gemma":[0.99586606,0.00046269625,0.00008811168,0.0022498718,0.00023236377,0.0011008823],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00015211698,0.00029075856,0.0004929566,0.00018561709,0.00024670773,0.00005912847,0.00067325146,0.000084417916,0.002307651],"category_scores_gemma":[0.000724994,0.00025751433,0.00026788365,0.00056657376,0.00022221387,0.00014297373,0.00053420267,0.00035613542,0.0066290433],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005289791,0.001618295,0.9640822,0.00050272705,0.00020049188,0.00015922221,0.00022932133,0.001751663,0.015533586,0.0015179301,0.009618451,0.0042571793],"study_design_scores_gemma":[0.00078546844,0.0008222921,0.64069325,0.0007956337,0.00025393986,0.000047609166,0.0006666761,0.0011134155,0.0018625958,0.001168006,0.35075197,0.0010391589],"about_ca_topic_score_codex":0.000047497662,"about_ca_topic_score_gemma":0.000047645324,"teacher_disagreement_score":0.3411335,"about_ca_system_score_codex":0.00014143877,"about_ca_system_score_gemma":0.00044895627,"threshold_uncertainty_score":0.9999877},"labels":[],"label_agreement":null},{"id":"W2980599190","doi":"10.1177/1715163519877897","title":"The role of pharmacists in providing recommended vaccines","year":2019,"lang":"en","type":"review","venue":"Canadian Pharmacists Journal / Revue des Pharmaciens du Canada","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"","funders":"GlaxoSmithKline","keywords":"Virology; Medicine; Family medicine","score_opus":0.06742272779877641,"score_gpt":0.3417610554965645,"score_spread":0.2743383276977881,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2980599190","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0018473382,0.9897754,0.0000013982855,0.00008667674,0.0037674971,0.0017355151,0.0004447332,0.000024647657,0.0023167601],"genre_scores_gemma":[0.021371897,0.9758359,0.000011287334,0.00055441493,0.001020063,0.000094217794,0.000052027666,0.0001429455,0.0009172535],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9951529,0.00050576864,0.0018435756,0.0005667119,0.0005369579,0.00139412],"domain_scores_gemma":[0.99547076,0.00048384676,0.0010550536,0.0005426137,0.0005556502,0.001892087],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0010839452,0.0008053714,0.0020989268,0.0011231907,0.0008336592,0.00015778521,0.00090217346,0.00022902535,0.00032157052],"category_scores_gemma":[0.00032098955,0.0006081705,0.0007867769,0.0014670885,0.00014833671,0.00023324926,0.0000808079,0.0023087445,0.000026416768],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":true,"study_design_scores_codex":[0.000040703548,0.00005818481,0.00039790213,0.006604073,0.00057990226,0.01492104,0.00017374882,0.00002040846,0.00017256143,0.000015733143,0.0042937566,0.972722],"study_design_scores_gemma":[0.0010224339,0.000042466185,0.0000010154362,0.0010461289,0.00095640455,0.29604185,0.000007644325,0.0001331152,0.00009500146,0.000015189138,0.70022887,0.00040990103],"about_ca_topic_score_codex":0.0044824993,"about_ca_topic_score_gemma":0.02997723,"teacher_disagreement_score":0.9723121,"about_ca_system_score_codex":0.0047544655,"about_ca_system_score_gemma":0.018512052,"threshold_uncertainty_score":0.99999297},"labels":[],"label_agreement":null},{"id":"W2981440800","doi":"10.1093/ofid/ofz360.2383","title":"2706. Indirect Effects of Infant 13-valent Conjugate Pneumococcal Vaccination Program on Invasive Pneumococcal Disease in Adults in British Columbia, Canada","year":2019,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Poisson regression; Incidence (geometry); Rate ratio; Population; Pneumococcal disease; Vaccination; Pediatrics; Demography; Streptococcus pneumoniae; Environmental health; Immunology","score_opus":0.004386682368539501,"score_gpt":0.24000464769843208,"score_spread":0.23561796532989257,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2981440800","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9889154,0.00014824049,2.4148767e-7,0.00020712113,0.0005937477,0.0075305826,0.0001772545,0.00009500476,0.0023324068],"genre_scores_gemma":[0.9970451,0.0001225393,0.0000012062226,0.0006687816,0.000040511706,0.0016274988,0.00016270486,0.000055690707,0.0002759681],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99726754,0.00024369072,0.0006924209,0.0006922907,0.00046597872,0.0006380758],"domain_scores_gemma":[0.9981576,0.0003578226,0.00027567215,0.00048595347,0.00017965652,0.00054329284],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00011063052,0.00029416758,0.0008199158,0.00027934334,0.00013826464,0.0001996331,0.000255335,0.0001430015,0.00017691815],"category_scores_gemma":[0.0007114569,0.0003833435,0.00018957471,0.00074766815,0.00006851168,0.00034795012,0.00021288836,0.00040578237,0.000029142024],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026124646,0.0040006256,0.9855213,0.001174199,0.00008254697,0.00061164016,0.00004139944,0.00021282576,0.0009534285,0.000012253054,0.00044734258,0.006681198],"study_design_scores_gemma":[0.007160294,0.0019928962,0.98628706,0.0026532954,0.00011141283,0.00003148868,0.00009054509,0.00010105079,0.00036358196,0.00011092774,0.00069647754,0.00040098376],"about_ca_topic_score_codex":0.60680974,"about_ca_topic_score_gemma":0.97727513,"teacher_disagreement_score":0.3704654,"about_ca_system_score_codex":0.000760029,"about_ca_system_score_gemma":0.0021023164,"threshold_uncertainty_score":0.99986184},"labels":[],"label_agreement":null},{"id":"W2981669186","doi":"10.1093/ofid/ofz360.2392","title":"2715. Pneumococcal Community-Acquired Pneumonia Attributed to PCV13 Serotypes in Hospitalized Adults: Comparison of the 50–64 and 65+ Age Groups","year":2019,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Saint John Regional Hospital; McGill University Health Centre; Université de Sherbrooke; University of Toronto; McMaster University; Sinai Health System; Vancouver General Hospital; University of British Columbia; Dalhousie University; Izaak Walton Killam Health Centre; Saskatchewan Health; Centre hospitalier universitaire de Québec; Saskatchewan Health Authority; Nova Scotia Health Authority; Ottawa Hospital","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Serotype; Pneumonia; Community-acquired pneumonia; Pneumococcal pneumonia; Sputum; Pneumococcal disease; Pediatrics; Internal medicine; Streptococcus pneumoniae; Immunology; Antibiotics; Tuberculosis; Microbiology","score_opus":0.015319026571250324,"score_gpt":0.30278588707731857,"score_spread":0.28746686050606823,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2981669186","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923202,0.00011215895,0.000008751857,0.0012553458,0.00035808576,0.0029347783,0.00013330577,0.00009102678,0.0027863546],"genre_scores_gemma":[0.998316,0.000023035424,0.0000069964935,0.0011175448,0.000022209439,0.00022769337,0.000060265444,0.000041843152,0.00018440807],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9980057,0.00041681036,0.0005511506,0.00033625192,0.00026076494,0.00042934614],"domain_scores_gemma":[0.99836373,0.00019188382,0.00020541853,0.00081544835,0.00013030006,0.00029323788],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022335941,0.00030278685,0.0008305224,0.0002051366,0.00040217233,0.00010967755,0.00042212073,0.00014654672,0.00011207894],"category_scores_gemma":[0.00025630515,0.00022526877,0.00018252955,0.00067402475,0.0001910167,0.0002621361,0.0007406015,0.0003630935,0.00006479063],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026721045,0.001435162,0.9773952,0.0001818708,0.00010146321,0.000007873273,0.0006337477,0.00007347001,0.01874393,0.00020924656,0.0002979455,0.0006529208],"study_design_scores_gemma":[0.0037798572,0.0014337037,0.9874393,0.0005518313,0.000139435,0.000025405132,0.0011165323,0.00009407984,0.00056248653,0.00026707008,0.0043181153,0.0002722221],"about_ca_topic_score_codex":0.001688889,"about_ca_topic_score_gemma":0.0024684526,"teacher_disagreement_score":0.018181443,"about_ca_system_score_codex":0.00014447437,"about_ca_system_score_gemma":0.0001276741,"threshold_uncertainty_score":0.9186194},"labels":[],"label_agreement":null},{"id":"W2981681866","doi":"10.1093/ofid/ofz360.2393","title":"2716. Persistence of 13-Valent Pneumococcal Conjugate Vaccine (PCV13) Serotypes in Invasive Pneumococcal Disease in Adults in Southern Ontario Canada Despite Routine Pediatric Vaccination","year":2019,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Trillium Health Centre; William Osler Health System; St. Michael's Hospital; Public Health Agency of Canada; North York General Hospital; Sinai Health System; University of Toronto","funders":"","keywords":"Medicine; Herd immunity; Pneumococcal conjugate vaccine; Pneumococcal disease; Vaccination; Incidence (geometry); Meningitis; Population; Pediatrics; Case fatality rate; Serotype; Streptococcus pneumoniae; Pneumonia; Pneumococcal pneumonia; Bacteremia; Internal medicine; Immunology; Environmental health; Antibiotics","score_opus":0.00783899205347715,"score_gpt":0.22828670412384278,"score_spread":0.22044771207036562,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2981681866","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944439,0.00020688372,9.4007214e-7,0.0006877616,0.00030872415,0.0028245542,0.00014508807,0.000034734563,0.0013474132],"genre_scores_gemma":[0.998565,0.00008306636,0.0000017722405,0.00039128252,0.00004792916,0.00028637605,0.00011163883,0.000044228793,0.000468676],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9972486,0.00018399712,0.00088032614,0.00067119836,0.00038911044,0.00062679383],"domain_scores_gemma":[0.99837905,0.00018207691,0.0003193345,0.00048766175,0.00020020567,0.00043165244],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00021223952,0.0003934318,0.0007733357,0.0006119086,0.00009364618,0.000049862305,0.00030431064,0.00013143057,0.00052585785],"category_scores_gemma":[0.00031110086,0.00036988937,0.00017302076,0.00092043873,0.000028671266,0.00040977122,0.0002559211,0.00045918894,0.000050718758],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00083676015,0.0013322567,0.99345726,0.00045611552,0.000036701513,0.00020470779,0.00073768117,0.0021844634,0.000502993,0.000031245443,0.000043178483,0.0001766244],"study_design_scores_gemma":[0.007244323,0.0005785253,0.98969775,0.0005581608,0.00013160068,0.000015664224,0.00085405493,0.00027572998,0.0000657656,0.00009769543,0.00009925864,0.0003814962],"about_ca_topic_score_codex":0.7280227,"about_ca_topic_score_gemma":0.9891101,"teacher_disagreement_score":0.2610874,"about_ca_system_score_codex":0.0015696527,"about_ca_system_score_gemma":0.0033667705,"threshold_uncertainty_score":0.9998753},"labels":[],"label_agreement":null},{"id":"W2981716024","doi":"10.1093/ofid/ofz360.2382","title":"2705. Serotype Replacement Following Childhood Pneumococcal Conjugate Vaccination Programs in British Columbia, Canada","year":2019,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Serotype; Incidence (geometry); Vaccination; Poisson regression; Pneumococcal disease; Rate ratio; Population; Pediatrics; Demography; Streptococcus pneumoniae; Virology; Environmental health; Biology; Microbiology","score_opus":0.007797395568288748,"score_gpt":0.2395898666225531,"score_spread":0.23179247105426437,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2981716024","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9846918,0.000082978295,0.0000023336697,0.00046748327,0.0007783807,0.003307968,0.000033867673,0.00011421675,0.010520994],"genre_scores_gemma":[0.995596,0.000017275786,0.0000030644458,0.001445212,0.000045208802,0.00044620142,0.00016027947,0.000042614465,0.002244145],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99824834,0.00007889591,0.00039131066,0.00047922504,0.0003148834,0.00048736093],"domain_scores_gemma":[0.9990925,0.000038418304,0.0001224905,0.0003713741,0.00009316801,0.00028200803],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001360477,0.00016709007,0.0004270661,0.00006817372,0.00028177473,0.0005131232,0.0001642288,0.000090912356,0.00070368726],"category_scores_gemma":[0.00009581838,0.00023513677,0.00014775567,0.00040035127,0.000016199338,0.0003591397,0.00016934868,0.00022605727,0.000062228944],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017929568,0.0008522653,0.9909092,0.000055851724,0.00011958676,0.0001227686,0.00002458788,0.000024159865,0.00018509202,0.00001446495,0.0012783727,0.0063956818],"study_design_scores_gemma":[0.003954875,0.00078462466,0.9798648,0.00028064902,0.00011011904,0.00011577869,0.00028407693,0.000041511885,0.000015971347,0.00012795837,0.014134691,0.00028496695],"about_ca_topic_score_codex":0.67880744,"about_ca_topic_score_gemma":0.9766371,"teacher_disagreement_score":0.29782972,"about_ca_system_score_codex":0.00059110665,"about_ca_system_score_gemma":0.0012302562,"threshold_uncertainty_score":0.9588599},"labels":[],"label_agreement":null},{"id":"W2981801248","doi":"10.1093/ofid/ofz360.2391","title":"2714. Streptococcus pneumoniae Nasopharyngeal Carriage in Canadian Adults Hospitalized with Community-Acquired Pneumonia from 2010 to 2017","year":2019,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Saint John Regional Hospital; McGill University Health Centre; Université de Sherbrooke; University of Toronto; McMaster University; Sinai Health System; Vancouver General Hospital; University of British Columbia; Dalhousie University; Izaak Walton Killam Health Centre; Saskatchewan Health; Centre hospitalier universitaire de Québec; Saskatchewan Health Authority; Nova Scotia Health Authority; Ottawa Hospital","funders":"","keywords":"Streptococcus pneumoniae; Carriage; Serotype; Medicine; Community-acquired pneumonia; Pneumonia; Herd immunity; Pneumococcal conjugate vaccine; Microbiology; Virology; Immunology; Internal medicine; Vaccination; Antibiotics; Biology; Pathology","score_opus":0.010066968546976824,"score_gpt":0.26922626325843746,"score_spread":0.25915929471146065,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2981801248","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9754775,0.00007400319,0.0000015750337,0.0019223618,0.0007413755,0.0041735857,0.0009908003,0.00016935075,0.01644941],"genre_scores_gemma":[0.994547,0.000025079586,0.000007196866,0.0031946155,0.00008275953,0.0007057885,0.0005081416,0.00009510959,0.00083428196],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9972495,0.0002709822,0.0004721029,0.0006415571,0.00033305315,0.0010328417],"domain_scores_gemma":[0.99656963,0.00012469357,0.00016237599,0.0013492706,0.00019115316,0.0016028843],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00017964833,0.0004996872,0.000855425,0.0005377945,0.0006391227,0.0002857225,0.0006027827,0.00021237206,0.0006982128],"category_scores_gemma":[0.00011849617,0.00043469248,0.0001787644,0.00067271054,0.00012240575,0.00056305574,0.0003180673,0.00050544227,0.00082647416],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028076995,0.0006796881,0.9921109,0.00006103635,0.00017927632,0.0002778365,0.0005030946,0.00008731434,0.0035377105,0.000058284357,0.0016491932,0.0005748632],"study_design_scores_gemma":[0.006007505,0.0021787437,0.9761206,0.0006275587,0.00016300149,0.000037712252,0.0006684911,0.00007081985,0.0001400623,0.0001061945,0.01328539,0.00059393456],"about_ca_topic_score_codex":0.6062162,"about_ca_topic_score_gemma":0.74763304,"teacher_disagreement_score":0.14141683,"about_ca_system_score_codex":0.00066034746,"about_ca_system_score_gemma":0.0012738145,"threshold_uncertainty_score":0.9999515},"labels":[],"label_agreement":null},{"id":"W2982061528","doi":"10.1093/ofid/ofz360.2405","title":"2728. Proportion of Invasive Pneumococcal Disease Potentially Covered by Current and Next-Generation of Higher-Valency Pneumococcal Conjugate Vaccines in Canada, 2010–2016","year":2019,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Pfizer (Canada)","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Pneumococcal disease; Pediatrics; Age groups; Serotype; Young adult; Streptococcus pneumoniae; Demography; Internal medicine; Immunology; Antibiotics","score_opus":0.020298314117358326,"score_gpt":0.26492143351050085,"score_spread":0.24462311939314252,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2982061528","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99442255,0.0011106561,0.0000119508395,0.0006956969,0.0008597359,0.0020450563,0.00044916235,0.000023158256,0.00038205163],"genre_scores_gemma":[0.99837613,0.0005811438,0.0000016854297,0.00020737747,0.000059011774,0.00014228403,0.0002806428,0.000030088326,0.00032160996],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99810547,0.00010962082,0.00068636093,0.0004360097,0.0003375123,0.00032502902],"domain_scores_gemma":[0.99853134,0.000066272085,0.0004076905,0.000354746,0.00026306315,0.00037687298],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000089714005,0.00027082022,0.0005848803,0.00017234775,0.00010388473,0.000049339455,0.00014257581,0.000072923445,0.000302767],"category_scores_gemma":[0.00012654827,0.00023246174,0.00011840035,0.00025629014,0.00008382199,0.0005107919,0.0001567298,0.00016455559,0.000010649719],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017983241,0.0006889308,0.80669534,0.00039760343,0.000067312736,0.000013019695,0.0000170675,0.000080054444,0.18883982,0.00012343729,0.0013115429,0.0015860302],"study_design_scores_gemma":[0.0030408746,0.00056787435,0.9891338,0.00041765155,0.0002574085,0.000012092608,0.000049877253,0.00018249771,0.0039216746,0.00015981853,0.0019787254,0.00027775666],"about_ca_topic_score_codex":0.07803842,"about_ca_topic_score_gemma":0.078709535,"teacher_disagreement_score":0.18491815,"about_ca_system_score_codex":0.0002583172,"about_ca_system_score_gemma":0.0026709852,"threshold_uncertainty_score":0.9479515},"labels":[],"label_agreement":null},{"id":"W2982249505","doi":"10.1093/ofid/ofz360.2378","title":"2701. The Impact of Infant 13-valent Conjugate Pneumococcal Vaccination Program on Invasive Pneumococcal Disease in Children in British Columbia, Canada","year":2019,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Incidence (geometry); Rate ratio; Poisson regression; Population; Pediatrics; Vaccination; Pneumococcal disease; Demography; Streptococcus pneumoniae; Immunology; Environmental health; Antibiotics","score_opus":0.005650469970231219,"score_gpt":0.267606663684229,"score_spread":0.26195619371399775,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2982249505","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.990449,0.00008859533,1.6244609e-7,0.00043968667,0.00018298255,0.0063852863,0.0003824856,0.000054386706,0.0020174119],"genre_scores_gemma":[0.9981158,0.00007458381,3.7301186e-7,0.000509358,0.000041056497,0.0008458372,0.00018419616,0.000041834068,0.0001869946],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9977932,0.00020680502,0.00057815865,0.0005016625,0.00036765495,0.00055250316],"domain_scores_gemma":[0.9985082,0.00017240396,0.00023660761,0.00053246727,0.00014801652,0.0004023095],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00016505776,0.00024876685,0.00058325985,0.00015877858,0.00018232297,0.00026669004,0.00030340723,0.00009508396,0.0004038037],"category_scores_gemma":[0.00032709303,0.0002473836,0.00026281542,0.00062113605,0.00008121758,0.00028658743,0.00020694872,0.00038860965,0.000022873688],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011418148,0.0025473447,0.9917595,0.00006867139,0.00014133473,0.00008762788,0.000025263827,0.0014589078,0.0003338499,0.000014814383,0.000691056,0.0027574918],"study_design_scores_gemma":[0.0036370484,0.0014259593,0.99351376,0.00038331098,0.00009413222,0.00006418052,0.00006752166,0.00016976199,0.00002861194,0.00016501681,0.00016877726,0.00028189027],"about_ca_topic_score_codex":0.85009825,"about_ca_topic_score_gemma":0.9564584,"teacher_disagreement_score":0.106360115,"about_ca_system_score_codex":0.0008278727,"about_ca_system_score_gemma":0.0027022576,"threshold_uncertainty_score":0.99999785},"labels":[],"label_agreement":null},{"id":"W2982530025","doi":"10.2196/14405","title":"Automated Respiratory Rate Counter to Assess Children for Symptoms of Pneumonia: Protocol for Cross-Sectional Usability and Acceptability Studies in Ethiopia and Nepal","year":2019,"lang":"en","type":"article","venue":"JMIR Research Protocols","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Bundesministerium für Gesundheit; UNICEF","keywords":"Medicine; Usability; Health facility; Environmental health; Cross-sectional study; Developing country; Medical emergency; Family medicine; Population; Health services; Pathology; Computer science","score_opus":0.3313674541640969,"score_gpt":0.6105208072766547,"score_spread":0.2791533531125578,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2982530025","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4891614,8.202344e-7,0.0000051663574,0.00009757769,0.000007908388,0.51059294,0.000053493328,0.0000510847,0.000029621679],"genre_scores_gemma":[0.13672315,8.380399e-8,0.000094641495,0.00011845482,0.00008301042,0.8628511,0.000003706931,0.000027541224,0.00009831564],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9969709,0.0004926608,0.0007304199,0.00075336575,0.00048651686,0.00056617364],"domain_scores_gemma":[0.9967191,0.0010805082,0.00012949012,0.0004962462,0.0013481054,0.00022654305],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0049748654,0.00023031118,0.000579045,0.0003528389,0.00025241374,0.00009744301,0.00015882136,0.00026504148,0.00004078697],"category_scores_gemma":[0.001300465,0.00017986893,0.00010552421,0.00043675938,0.0007284216,0.00025026198,0.00023833591,0.00052282115,0.000005295834],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024504606,0.00058884977,0.9412428,0.0043530026,0.00006582112,0.0000010074064,0.00019252783,0.0000073563497,0.05045204,0.00014000476,0.00018661513,0.0003195069],"study_design_scores_gemma":[0.007952821,0.005662562,0.9638868,0.0007007692,0.0000033926167,0.000009923481,0.000052769057,0.00020379444,0.004497716,0.00018777982,0.016678397,0.00016330015],"about_ca_topic_score_codex":0.000016787111,"about_ca_topic_score_gemma":0.000039717663,"teacher_disagreement_score":0.35243827,"about_ca_system_score_codex":0.00034102303,"about_ca_system_score_gemma":0.00051286316,"threshold_uncertainty_score":0.73348427},"labels":[],"label_agreement":null},{"id":"W2982730711","doi":"10.33321/cdi.2019.43.41","title":"Invasive Pneumococcal Disease Surveillance, 1 July to 30 September 2017","year":2019,"lang":"en","type":"article","venue":"Communicable Diseases Intelligence","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"NSW Health Pathology; Queensland Health","keywords":"Pneumococcal disease; Serotype; Pneumococcal conjugate vaccine; Medicine; Quarter (Canadian coin); Conjugate vaccine; Streptococcus pneumoniae; Pediatrics; Pneumococcal infections; Virology; Immunization; Immunology; Biology; Microbiology; Antibody; Geography; Antibiotics","score_opus":0.026579383197053774,"score_gpt":0.3165002893032887,"score_spread":0.28992090610623494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2982730711","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92496365,0.0023235057,0.00047343026,0.0017421049,0.00087316474,0.0019536586,0.00026643812,0.00040584177,0.066998206],"genre_scores_gemma":[0.9910104,0.0005004299,0.000053310025,0.0028120072,0.00009842242,0.00013553389,0.00006628319,0.000042655396,0.0052809254],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981711,0.00017750323,0.00039438927,0.00044197318,0.0003306699,0.0004843636],"domain_scores_gemma":[0.9958566,0.00046106707,0.00009064869,0.0022445798,0.00026138852,0.001085721],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00014505874,0.00028928492,0.00047700954,0.0001674314,0.0002516968,0.00006495763,0.00064859394,0.00008526209,0.0022175498],"category_scores_gemma":[0.0005617216,0.0002547485,0.00028767934,0.00043219805,0.00019060647,0.00015546227,0.00048214197,0.0003805405,0.014561022],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042762348,0.0013586878,0.96316975,0.00048685682,0.00021127531,0.00023744153,0.00020132057,0.0020402917,0.008450837,0.00064493925,0.019768292,0.0030026676],"study_design_scores_gemma":[0.0004890697,0.00052513595,0.61531955,0.00057041825,0.00018249279,0.00004680765,0.0002690049,0.0006306175,0.0008187106,0.0005598969,0.3798808,0.0007075219],"about_ca_topic_score_codex":0.000025084322,"about_ca_topic_score_gemma":0.000026875668,"teacher_disagreement_score":0.36011252,"about_ca_system_score_codex":0.000117766875,"about_ca_system_score_gemma":0.00042873557,"threshold_uncertainty_score":0.99999046},"labels":[],"label_agreement":null},{"id":"W2982755374","doi":"10.1172/jci132005","title":"Immune exclusion by naturally acquired secretory IgA against pneumococcal pilus-1","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Investigation","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Medical Research Council; U.S. Public Health Service; School of Medicine, New York University; York University","keywords":"Pilus; Microbiology; Biology; Mucus; Streptococcus pneumoniae; Immune system; Immunoglobulin A; Antibody; Colonization; Pathogen; Immunology; Immunoglobulin G; Gene; Escherichia coli; Genetics","score_opus":0.03485130849333248,"score_gpt":0.3464863087446178,"score_spread":0.3116350002512853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2982755374","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9892398,0.000326397,0.000058837893,0.0062810467,0.0023546347,0.00026920033,0.0000035336986,0.000035097997,0.0014314145],"genre_scores_gemma":[0.9929757,0.0002353628,0.00022184588,0.0047213077,0.0009542272,0.0000021320989,0.000021905898,0.000024420015,0.0008431162],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9969034,0.00029239594,0.0018576597,0.00020278052,0.0005398805,0.00020384949],"domain_scores_gemma":[0.9971938,0.00041093345,0.0011752789,0.00026587961,0.0004917478,0.00046237477],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016806162,0.00017076312,0.00068548956,0.00015409861,0.00009695112,0.000029500581,0.00015330238,0.0003688589,0.00012186468],"category_scores_gemma":[0.0013881532,0.00012530044,0.00047895245,0.00023503894,0.00022013129,0.00037191578,0.0000515654,0.0008336279,0.00013559067],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000186288,0.00020295767,0.1105994,0.000054630855,0.0001103976,0.000032486183,0.000091527996,0.00003833322,0.8820742,0.000052132742,0.0033229622,0.0032347185],"study_design_scores_gemma":[0.0065747593,0.003325964,0.88699245,0.0009986379,0.00027392397,0.00033430988,0.00012828113,0.0012854306,0.019721372,0.00092944887,0.07908213,0.00035328817],"about_ca_topic_score_codex":0.0000026639011,"about_ca_topic_score_gemma":8.223138e-7,"teacher_disagreement_score":0.8623528,"about_ca_system_score_codex":0.00009017327,"about_ca_system_score_gemma":0.00046588012,"threshold_uncertainty_score":0.51096034},"labels":[],"label_agreement":null},{"id":"W2983884827","doi":"10.33321/cdi.2017.41.49","title":"Invasive Pneumococcal Disease Surveillance, 1 January to 31 March 2017","year":2017,"lang":"en","type":"article","venue":"Communicable Diseases Intelligence","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"NSW Health Pathology; Queensland Health","keywords":"Medicine; Pneumococcal disease; Quarter (Canadian coin); Pneumococcal conjugate vaccine; Serotype; Pediatrics; Disease surveillance; Disease; Conjugate vaccine; Streptococcus pneumoniae; Virology; Immunization; Internal medicine; Immunology; Antibody; Antibiotics","score_opus":0.0592972876480813,"score_gpt":0.3654135802632303,"score_spread":0.306116292615149,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2983884827","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9121335,0.0035005761,0.00095439417,0.01604148,0.0012338967,0.0026030636,0.00058524613,0.000409725,0.06253812],"genre_scores_gemma":[0.993967,0.0016353736,0.000095607094,0.0016131992,0.00017704956,0.00022903885,0.00006831172,0.00003329369,0.002181139],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981769,0.0001410452,0.00037623476,0.00044959315,0.0003304838,0.00052579155],"domain_scores_gemma":[0.9934763,0.00039620823,0.00015575303,0.004385515,0.0002777337,0.0013085274],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002019801,0.00029027907,0.0004657982,0.00016491368,0.001525498,0.0002092986,0.0015804243,0.00008618086,0.00021051755],"category_scores_gemma":[0.002505897,0.0002607073,0.00028673492,0.00016623319,0.0006151693,0.0002592684,0.0011834077,0.00042203238,0.0010310556],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006852574,0.0014067568,0.9594003,0.00035465104,0.00019453229,0.00075868994,0.0001589522,0.00029502483,0.005995466,0.0010012544,0.01792171,0.011827395],"study_design_scores_gemma":[0.00026273244,0.0002529045,0.92292637,0.00035673837,0.00011645551,0.000032199878,0.00014785747,0.00028009326,0.00051171746,0.0008461551,0.073873,0.000393766],"about_ca_topic_score_codex":0.00010360648,"about_ca_topic_score_gemma":0.00009843528,"teacher_disagreement_score":0.08183349,"about_ca_system_score_codex":0.00011564048,"about_ca_system_score_gemma":0.00062167004,"threshold_uncertainty_score":0.9999845},"labels":[],"label_agreement":null},{"id":"W2984906906","doi":"10.7759/cureus.6082","title":"Awareness Among Parents About Pneumococcal Conjugate Vaccine in Routine Immunization Program to Prevent Pneumococcal Pneumonia in Bangladesh","year":2019,"lang":"en","type":"article","venue":"Cureus","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Global Affairs Canada; Department for International Development; International Centre for Diarrhoeal Disease Research, Bangladesh; Styrelsen för Internationellt Utvecklingssamarbete","keywords":"Medicine; Socioeconomic status; Vaccination; Pneumococcal conjugate vaccine; Family medicine; Pneumonia; Pneumococcal pneumonia; Environmental health; Pediatrics; Streptococcus pneumoniae; Immunology; Population; Internal medicine","score_opus":0.011229770608743576,"score_gpt":0.301224154473224,"score_spread":0.2899943838644804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2984906906","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937778,0.00014081104,0.000025754864,0.0009338738,0.00067155674,0.0033749102,0.000013963617,0.00021624283,0.00084505294],"genre_scores_gemma":[0.99816674,0.00007450776,0.000031056337,0.00024276607,0.00013122313,0.000609302,0.00013238339,0.00007011583,0.0005419316],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9972684,0.00018319949,0.0008399482,0.0006546631,0.0003388877,0.00071494374],"domain_scores_gemma":[0.998572,0.00006201493,0.00015873862,0.0007067038,0.00015876153,0.00034178357],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003856204,0.0003933933,0.0007113719,0.0004133367,0.000085981694,0.00005747934,0.0002641589,0.00029667857,0.0001690456],"category_scores_gemma":[0.00014142846,0.00035764914,0.00013837041,0.0011053683,0.00004354343,0.00026516616,0.00016902955,0.0005782847,0.00025076233],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008786271,0.0015884459,0.84871376,0.00011385795,0.000037384452,0.00007389363,0.00040005034,0.00059701974,0.14682515,0.000043028766,0.000013378129,0.0015061565],"study_design_scores_gemma":[0.0026145538,0.0008853712,0.98645717,0.0006698611,0.000046096087,0.000045631197,0.00017392854,0.0018686868,0.002984076,0.00002779605,0.003847899,0.0003789317],"about_ca_topic_score_codex":0.0004719564,"about_ca_topic_score_gemma":0.0014063439,"teacher_disagreement_score":0.14384107,"about_ca_system_score_codex":0.00044078726,"about_ca_system_score_gemma":0.00021554287,"threshold_uncertainty_score":0.9998875},"labels":[],"label_agreement":null},{"id":"W2985173974","doi":"10.33321/cdi.2019.43.56","title":"Invasive Pneumococcal Disease Surveillance, 1 January to 31 March 2019","year":2019,"lang":"en","type":"article","venue":"Communicable Diseases Intelligence","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"NSW Health Pathology; Queensland Health","keywords":"Pneumococcal disease; Serotype; Pneumococcal conjugate vaccine; Medicine; Quarter (Canadian coin); Conjugate vaccine; Streptococcus pneumoniae; Pediatrics; Pneumococcal infections; Virology; Immunization; Immunology; Biology; Antibody; Geography; Microbiology; Antibiotics","score_opus":0.01932614834431727,"score_gpt":0.3049382979735706,"score_spread":0.2856121496292533,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2985173974","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9704827,0.002882666,0.00034276803,0.0039853244,0.0006902893,0.0022053395,0.00030948434,0.00028755338,0.018813876],"genre_scores_gemma":[0.99077564,0.0011036284,0.00007845567,0.002940569,0.00009899463,0.00015715459,0.00015257242,0.00004035453,0.0046526026],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998049,0.00018751857,0.000412283,0.00046552165,0.00035771076,0.0005279485],"domain_scores_gemma":[0.99573565,0.00062359206,0.00007736993,0.002237914,0.0002449366,0.0010805392],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00017165602,0.0002898807,0.0004852165,0.00023344217,0.00023213438,0.00005791079,0.00074331125,0.00008599851,0.0007691134],"category_scores_gemma":[0.00058229157,0.00025957363,0.0002835714,0.0006276719,0.00020289245,0.0001582268,0.0006374207,0.0004291196,0.004795679],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006669494,0.0012497719,0.96344316,0.00040352278,0.0001553986,0.00016257321,0.00014143603,0.0013552896,0.012886877,0.000885542,0.013998807,0.004650676],"study_design_scores_gemma":[0.0004341553,0.00064615975,0.86042184,0.0004920999,0.00013123041,0.000035752866,0.00036706158,0.00061088306,0.0008617076,0.000647885,0.13472974,0.0006214853],"about_ca_topic_score_codex":0.000054438617,"about_ca_topic_score_gemma":0.000022780445,"teacher_disagreement_score":0.12073093,"about_ca_system_score_codex":0.00014420519,"about_ca_system_score_gemma":0.000639777,"threshold_uncertainty_score":0.99998564},"labels":[],"label_agreement":null},{"id":"W2985708153","doi":"10.1016/j.japh.2019.11.002","title":"The impact of clinical pharmacy services on pneumococcal vaccine frequency and appropriateness in a family medicine clinic","year":2019,"lang":"en","type":"article","venue":"Journal of the American Pharmacists Association","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Novartis Pharmaceuticals Canada","keywords":"Medicine; Family medicine; Pharmacy; Clinical pharmacy; Pneumococcal vaccine; Streptococcus pneumoniae; Antibiotics","score_opus":0.038058818366908866,"score_gpt":0.4369558983667809,"score_spread":0.398897079999872,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2985708153","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994275,0.0001716582,0.0000014319197,0.0040064906,0.0007917344,0.00030798343,0.000005696453,0.000006479407,0.00043353366],"genre_scores_gemma":[0.9966608,0.0018570045,0.0000055788273,0.0008747814,0.0004529099,0.0000031120019,8.733429e-7,0.00001441383,0.00013047771],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9973354,0.00058837683,0.0012411056,0.0001393074,0.0004913994,0.00020442552],"domain_scores_gemma":[0.9951877,0.0009749982,0.0031683664,0.00020255876,0.00034241102,0.00012395515],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0027840803,0.00015012856,0.00076666404,0.00014387997,0.000080553145,0.000013427719,0.0002170373,0.00004620121,0.000029146697],"category_scores_gemma":[0.0005072623,0.00006858013,0.0003604374,0.0005036831,0.00009519919,0.00011184328,0.000037900314,0.00075360097,0.000008879196],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007086546,0.00024291941,0.9041047,0.000025479287,0.00033591097,0.000007494168,0.00014616596,0.000036184094,0.087132126,0.0000021559902,0.0002602414,0.006997948],"study_design_scores_gemma":[0.0052114995,0.0013849452,0.9914026,0.00015377748,0.00019201069,0.00007597851,0.00013367314,0.00039762253,0.00023173405,0.00009648773,0.0006503918,0.00006927649],"about_ca_topic_score_codex":0.00014270598,"about_ca_topic_score_gemma":0.0000054229045,"teacher_disagreement_score":0.08729789,"about_ca_system_score_codex":0.00028044326,"about_ca_system_score_gemma":0.00025874053,"threshold_uncertainty_score":0.32740632},"labels":[],"label_agreement":null},{"id":"W2985892649","doi":"10.1186/s12865-019-0325-9","title":"The effect of pneumococcal immunization on total and antigen-specific B cells in patients with severe chronic kidney disease","year":2019,"lang":"en","type":"article","venue":"BMC Immunology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"NOSM University; Lakehead University","funders":"Pfizer Canada; Northern Ontario Academic Medicine Association; Pfizer","keywords":"Immunology; Pneumococcal polysaccharide vaccine; Immunization; Medicine; Immunogenicity; Antibody; Immune system; Pneumococcal conjugate vaccine; Streptococcus pneumoniae; Biology; Pneumococcal disease; Microbiology","score_opus":0.003052790426455044,"score_gpt":0.20112473805316042,"score_spread":0.19807194762670538,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2985892649","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99839586,0.00035600344,0.00000505479,0.00007601696,0.00026820195,0.0006851762,0.000008352739,0.000014973257,0.00019036702],"genre_scores_gemma":[0.9996406,0.00014322769,0.0000018756417,0.000025149722,0.000018133696,0.000018166184,0.000024729328,0.00001344567,0.00011466597],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992877,0.0001476467,0.00015558446,0.00015540989,0.00008538923,0.00016826822],"domain_scores_gemma":[0.9993975,0.00014000872,0.00006754679,0.00030848922,0.0000354893,0.00005095604],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008138951,0.000111407324,0.0001968783,0.00008782478,0.00007225494,0.000006463907,0.000050749455,0.00007108007,0.000030776446],"category_scores_gemma":[0.00003571971,0.00006459951,0.000035115398,0.00013620818,0.00013395821,0.000036449244,0.000033341228,0.00017170268,0.000043737957],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013235381,0.00009977614,0.93475395,0.000055609413,0.000037928676,0.0000020388636,0.000034572833,0.000068963396,0.06250323,0.00006258316,0.000014455673,0.0010433476],"study_design_scores_gemma":[0.0042584934,0.0033498886,0.98644406,0.00011385634,0.000013851757,0.000006217589,0.00000994853,0.00003251644,0.003111816,0.0000022387032,0.0025849468,0.00007218424],"about_ca_topic_score_codex":0.00000550529,"about_ca_topic_score_gemma":0.0000032913717,"teacher_disagreement_score":0.059391417,"about_ca_system_score_codex":0.00006604633,"about_ca_system_score_gemma":0.000106762185,"threshold_uncertainty_score":0.26342916},"labels":[],"label_agreement":null},{"id":"W2993640903","doi":"10.1164/rccm.201910-1970le","title":"Procalcitonin is Useful for Evaluating Patients with Ambiguous Presentation and for Early Discontinuation of Antibiotics in Community-acquired Pneumonia","year":2019,"lang":"en","type":"letter","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Procalcitonin; Discontinuation; Intensive care medicine; Pneumonia; Antibiotics; Community-acquired pneumonia; Presentation (obstetrics); Sepsis; Internal medicine; Surgery; Microbiology","score_opus":0.04088525578103264,"score_gpt":0.3674391103474918,"score_spread":0.3265538545664592,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2993640903","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9674081,0.0004093087,0.0006353524,0.030138627,0.00017482282,0.0011252089,0.00008580537,0.000006266516,0.000016507132],"genre_scores_gemma":[0.95036453,0.000016116464,0.00032320066,0.048631262,0.0005491701,0.000010451301,0.00004653324,0.000045464167,0.000013260213],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99773574,0.00037516368,0.000854556,0.00022683394,0.00053490547,0.00027277617],"domain_scores_gemma":[0.99612725,0.0012220255,0.00066813873,0.00021905721,0.0016464441,0.00011710412],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00066205737,0.00026644566,0.0010880515,0.0003999338,0.00013064171,0.000019771207,0.00009486063,0.00020365341,0.000003241307],"category_scores_gemma":[0.0014533452,0.00018608554,0.00010358525,0.00022104847,0.0010784887,0.00014334479,0.000024488774,0.0008264344,1.0743778e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025256008,0.00042623735,0.92271215,0.006868639,0.00034246425,0.000057533427,0.008401267,0.0000052306577,0.008711625,0.000013991938,0.0034485091,0.046486735],"study_design_scores_gemma":[0.014061493,0.14197879,0.81118846,0.007244406,0.0024296306,0.00008903914,0.008822028,0.00006983509,0.001088774,0.00008707284,0.012415142,0.000525312],"about_ca_topic_score_codex":0.000049779384,"about_ca_topic_score_gemma":0.000008218449,"teacher_disagreement_score":0.14155255,"about_ca_system_score_codex":0.00007036906,"about_ca_system_score_gemma":0.00023008502,"threshold_uncertainty_score":0.75883484},"labels":[],"label_agreement":null},{"id":"W2994792007","doi":"10.1111/resp.13737","title":"Twenty‐five years of <i>Respirology</i>: Advances in respiratory infections and tuberculosis","year":2019,"lang":"en","type":"article","venue":"Respirology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Procalcitonin; Internal medicine; Pneumonia; Tuberculosis; Intensive care medicine; Sepsis; Pathology","score_opus":0.007134217300852912,"score_gpt":0.2761163454247441,"score_spread":0.2689821281238912,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2994792007","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.989534,0.0022765223,0.00000868452,0.0007386837,0.00032112273,0.00044218238,0.000009307892,0.00004390376,0.0066255885],"genre_scores_gemma":[0.9963921,0.0006910088,0.000016573742,0.0025303762,0.00007809909,0.00004891868,0.0000029255561,0.000022289592,0.0002177548],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984936,0.0001945979,0.00044223206,0.00038884123,0.0001405989,0.00034014255],"domain_scores_gemma":[0.99900365,0.00028732137,0.00013580282,0.00037910257,0.00007047458,0.00012362616],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031850077,0.00016217124,0.00053236925,0.0006167565,0.00004209151,0.0000046132272,0.000075381584,0.00029189984,0.00016947644],"category_scores_gemma":[0.0001994621,0.00015858369,0.000106632346,0.00043241505,0.00030048058,0.00014580661,0.000079526675,0.00039290544,0.00010699187],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012148549,0.00025670262,0.91125876,0.00010329129,0.000052321564,0.00004050363,0.00016099944,0.00014409731,0.07959466,0.00090990233,0.00008842498,0.007268829],"study_design_scores_gemma":[0.0020090921,0.0019615898,0.79247177,0.00004750535,0.000059225255,0.00008037946,0.00006741141,0.000032885557,0.0007100344,0.00028830257,0.20213333,0.000138485],"about_ca_topic_score_codex":0.000038323727,"about_ca_topic_score_gemma":0.00017855428,"teacher_disagreement_score":0.2020449,"about_ca_system_score_codex":0.000044389453,"about_ca_system_score_gemma":0.00010918391,"threshold_uncertainty_score":0.6466855},"labels":[],"label_agreement":null},{"id":"W2995115404","doi":"10.1371/journal.pone.0226353","title":"The shifting epidemiology and serotype distribution of invasive pneumococcal disease in Ontario, Canada, 2007-2017","year":2019,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; Public Health Ontario","funders":"","keywords":"Serotype; Incidence (geometry); Pneumococcal conjugate vaccine; Pneumococcal polysaccharide vaccine; Medicine; Epidemiology; Population; Pneumococcal disease; Conjugate vaccine; Pediatrics; Demography; Streptococcus pneumoniae; Immunization; Environmental health; Immunology; Internal medicine; Biology; Antigen; Microbiology","score_opus":0.04218179000096027,"score_gpt":0.2500507427954568,"score_spread":0.20786895279449652,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2995115404","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99666196,0.00014424375,0.0000013770476,0.0023582673,0.00006651612,0.0003353782,0.000019132847,0.000006531497,0.00040656832],"genre_scores_gemma":[0.9991526,0.000045396882,0.0000050728777,0.00026461095,0.000033453063,0.000017528282,0.000030418289,0.000004759455,0.00044613646],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99928284,0.00007921819,0.00022396795,0.00013177546,0.00009869978,0.00018347695],"domain_scores_gemma":[0.9990843,0.0004610706,0.00008565584,0.0001825644,0.000059881364,0.00012653589],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023612176,0.00006923838,0.00023983617,0.000020291218,0.000073021496,0.0000025812117,0.00004050442,0.00004631832,0.000043861975],"category_scores_gemma":[0.0009647976,0.000048735255,0.000022965996,0.000054371154,0.00006682915,0.000029379944,0.000030595227,0.00022252761,0.00000779061],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054506276,0.00013861907,0.98950833,0.00007111872,0.000050157058,0.000010913832,0.000039118,0.000008173148,0.009818098,0.00019759676,0.000077985846,0.000025395157],"study_design_scores_gemma":[0.00033640963,0.00009818896,0.9980123,0.00020041868,0.00006896977,0.0000026319183,0.000027827287,0.000086951586,0.00036449463,0.00012169801,0.0006307272,0.00004938314],"about_ca_topic_score_codex":0.50100154,"about_ca_topic_score_gemma":0.9233933,"teacher_disagreement_score":0.42239174,"about_ca_system_score_codex":0.00020110174,"about_ca_system_score_gemma":0.0008424392,"threshold_uncertainty_score":0.50232136},"labels":[],"label_agreement":null},{"id":"W2998767931","doi":"10.2196/16531","title":"Determining the Agreement Between an Automated Respiratory Rate Counter and a Reference Standard for Detecting Symptoms of Pneumonia in Children: Protocol for a Cross-Sectional Study in Ethiopia","year":2020,"lang":"en","type":"article","venue":"JMIR Research Protocols","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Bundesministerium für Gesundheit; UNICEF","keywords":"Medicine; Pediatrics; Cross-sectional study; Pneumonia; Respiratory tract infections; Respiratory system; Internal medicine; Pathology","score_opus":0.31954890205777053,"score_gpt":0.5769788336715675,"score_spread":0.257429931613797,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2998767931","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.49114496,1.5052174e-7,0.000014120528,0.00006875105,0.0000014373499,0.508675,0.00004122701,0.000041182826,0.000013166898],"genre_scores_gemma":[0.41259897,1.1716054e-8,0.000028182,0.00007376043,0.00007631629,0.58719337,0.0000033998049,0.00002108496,0.00000492263],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99664265,0.0007404303,0.00085609383,0.0005861054,0.0006333232,0.0005413742],"domain_scores_gemma":[0.9980258,0.00056955585,0.0002031191,0.00033486765,0.000675796,0.00019089955],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0044259513,0.00020923125,0.00043000086,0.00032345994,0.000362537,0.0001485162,0.0002533155,0.00017995095,0.000010361857],"category_scores_gemma":[0.00083348394,0.00014969677,0.00006417002,0.0005792935,0.0002420201,0.00020260672,0.00015470576,0.0008418425,0.0000014522185],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021031029,0.0004664063,0.98442954,0.0006802897,0.00003627205,0.0000036308322,0.00084813044,0.000013956215,0.009708695,0.000008145473,0.000016481981,0.0016853379],"study_design_scores_gemma":[0.014872629,0.0204416,0.9583718,0.0007638065,0.000004534422,0.00000251336,0.00014773798,0.00070257,0.001254309,0.00002956578,0.0032662826,0.00014266228],"about_ca_topic_score_codex":0.000017736482,"about_ca_topic_score_gemma":0.00011214906,"teacher_disagreement_score":0.07854601,"about_ca_system_score_codex":0.00019642405,"about_ca_system_score_gemma":0.0005348528,"threshold_uncertainty_score":0.61044574},"labels":[],"label_agreement":null},{"id":"W3003504828","doi":"10.1111/jpc.14796","title":"Pneumopericardium in a neonate with respiratory syncytial virus and <scp><i>Mycoplasma pneumoniae</i></scp> bronchiolitis: An unusual complication with unusual timing","year":2020,"lang":"en","type":"article","venue":"Journal of Paediatrics and Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Medicine; Pediatrics","score_opus":0.022387147778628432,"score_gpt":0.2748685920355855,"score_spread":0.25248144425695707,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3003504828","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99008137,0.0020781395,0.0003476091,0.0066206562,0.00009061955,0.00038425447,0.000025486848,0.000027930795,0.0003439577],"genre_scores_gemma":[0.98997986,0.0018923663,0.0002713992,0.0069203586,0.00088098977,0.000008496703,0.000005340242,0.000038105576,0.0000031052896],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9980859,0.00016729486,0.00064589275,0.00031716403,0.00040537867,0.00037837483],"domain_scores_gemma":[0.99810326,0.000149505,0.00055060076,0.00014210868,0.00017625178,0.0008782638],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044523817,0.00023961598,0.0006483365,0.0003206178,0.0002642549,0.00005592948,0.00008426706,0.000111376154,0.0000010520902],"category_scores_gemma":[0.00009391788,0.00017200984,0.000058589194,0.0005623216,0.00011192511,0.00023568228,0.000036106332,0.0008274658,0.0000013235156],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00049717195,0.0007233597,0.96763104,0.00092334405,0.00021496839,0.0007124403,0.006624854,0.00078490964,0.0033718103,0.00043665562,0.00046472056,0.0176147],"study_design_scores_gemma":[0.007916325,0.017497147,0.9212628,0.0005202658,0.0002963217,0.007913723,0.001725469,0.00095248176,0.00015532177,0.000027999455,0.041458618,0.00027351873],"about_ca_topic_score_codex":0.000047695437,"about_ca_topic_score_gemma":0.00007378477,"teacher_disagreement_score":0.046368256,"about_ca_system_score_codex":0.00010626113,"about_ca_system_score_gemma":0.0007015495,"threshold_uncertainty_score":0.70143574},"labels":[],"label_agreement":null},{"id":"W3003540327","doi":"10.1038/s41564-019-0651-y","title":"Designing ecologically optimized pneumococcal vaccines using population genomics","year":2020,"lang":"en","type":"article","venue":"Nature Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":74,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Engineering and Physical Sciences Research Council; Medical Research Council; Wellcome Trust","keywords":"Herd immunity; Carriage; Vaccination; Population; Streptococcus pneumoniae; Pneumococcal infections; Serotype; Biology; Medicine; Immunology; Virology; Microbiology; Antibiotics; Environmental health","score_opus":0.022622523575516102,"score_gpt":0.2848921377945393,"score_spread":0.26226961421902323,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3003540327","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933273,0.00022472,0.0017869018,0.0035843085,0.00037154727,0.00036054003,0.000011993446,0.0001368733,0.00019579953],"genre_scores_gemma":[0.9827041,0.000016762384,0.008633453,0.008080343,0.0004196835,0.000005424388,0.00009850493,0.000019721885,0.00002198007],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99907446,0.000097252574,0.00025358255,0.0003038947,0.000027295355,0.00024349752],"domain_scores_gemma":[0.9995193,0.000067261666,0.00009524426,0.00011306925,0.00008464184,0.000120495184],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000088234934,0.0001590892,0.00037030983,0.00007612797,0.00013557432,0.000011102263,0.00007799143,0.00069313124,0.00011125358],"category_scores_gemma":[0.00019346387,0.00012275981,0.00012242665,0.00018443883,0.00003542565,0.00003611942,0.000051501935,0.0007045076,0.000032635802],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011693261,0.000036254332,0.020420538,0.00001747361,0.00005129181,0.00003255832,0.000042170068,0.0006898173,0.9782506,0.000040949304,0.00014962639,0.0001517884],"study_design_scores_gemma":[0.02075067,0.005042112,0.39763045,0.000205955,0.0017970164,0.008906302,0.00037043582,0.012189339,0.3501651,0.00053533126,0.19990474,0.002502543],"about_ca_topic_score_codex":0.0000033151293,"about_ca_topic_score_gemma":0.0000025972467,"teacher_disagreement_score":0.6280855,"about_ca_system_score_codex":0.00009562639,"about_ca_system_score_gemma":0.00007776156,"threshold_uncertainty_score":0.5346063},"labels":[],"label_agreement":null},{"id":"W3006852354","doi":"10.1164/rccm.201911-2226le","title":"2019 Community-acquired Pneumonia Treatment Guidelines: There Is a Need for a Change toward More Parsimonious Antibiotic Use","year":2020,"lang":"en","type":"letter","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"World Health Organization","keywords":"Medicine; Intensive care medicine; Pneumonia; Antibiotics; Community-acquired pneumonia; Internal medicine; Microbiology","score_opus":0.1422561742782695,"score_gpt":0.3882524638743594,"score_spread":0.2459962895960899,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3006852354","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.09070083,0.01050934,0.00015187892,0.89633495,0.00075810915,0.0010135488,0.00041322023,0.00006762962,0.00005052589],"genre_scores_gemma":[0.2379115,0.000915386,0.0001873771,0.75336987,0.007328212,0.00003989255,0.00007288166,0.00011951938,0.000055372926],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99617326,0.0006341653,0.0013672368,0.00044924312,0.00073899166,0.0006370914],"domain_scores_gemma":[0.9947363,0.0013708646,0.0006536156,0.0006186306,0.0018722602,0.00074830174],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00033599767,0.0007525243,0.0024563465,0.00048557034,0.00038896434,0.000060554274,0.0002904845,0.00042775687,0.00004788965],"category_scores_gemma":[0.0016875362,0.0005017712,0.00062489044,0.00045006492,0.002188578,0.00018496883,0.00006935902,0.0018870728,0.0000056889953],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017582373,0.0005590847,0.018755615,0.0049583106,0.0021781211,0.013449273,0.021989375,9.0618914e-7,0.008740772,0.000021944306,0.81097776,0.116610594],"study_design_scores_gemma":[0.0036602211,0.046553902,0.0029224765,0.002607876,0.0034031959,0.0012493943,0.015579097,0.000011428802,0.00013771703,0.00002618982,0.9233297,0.00051877636],"about_ca_topic_score_codex":0.00030671907,"about_ca_topic_score_gemma":0.000007951909,"teacher_disagreement_score":0.14721066,"about_ca_system_score_codex":0.00027902413,"about_ca_system_score_gemma":0.00051585597,"threshold_uncertainty_score":0.9997434},"labels":[],"label_agreement":null},{"id":"W3007950481","doi":"10.1097/mcp.0000000000000669","title":"New biomarkers for respiratory infections","year":2020,"lang":"en","type":"review","venue":"Current Opinion in Pulmonary Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Medicine; Respiratory system; Intensive care medicine; MEDLINE; Internal medicine","score_opus":0.19300143635390027,"score_gpt":0.45433631031035887,"score_spread":0.2613348739564586,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3007950481","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[2.9424007e-7,0.97603744,0.00080742233,0.0016152083,0.01660663,0.0034323114,0.000080088954,0.00020078699,0.0012198369],"genre_scores_gemma":[0.000001416502,0.98954165,0.000032729782,0.00016582521,0.008430948,0.00082697306,0.0007003515,0.00012041648,0.0001796912],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9964811,0.00020436036,0.0015121049,0.0008915629,0.0004035739,0.00050728244],"domain_scores_gemma":[0.99757767,0.00048851466,0.00046841995,0.0006064569,0.00011455766,0.0007443681],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004172521,0.00072626903,0.0025920302,0.0013111965,0.00015557578,0.000012701476,0.00024154609,0.00048655114,0.00024422564],"category_scores_gemma":[0.0006690894,0.0005491108,0.00076518796,0.001747307,0.00019548234,0.00009944221,0.00009191823,0.0011532307,0.00012971104],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025516683,0.00023082636,0.00021433222,0.033904355,0.00018244893,0.000019941228,0.00002916283,2.7653118e-7,0.0000062901795,0.00018790098,0.06363134,0.90156764],"study_design_scores_gemma":[0.0013095603,0.00085915654,0.00016485246,0.05852827,0.0008392293,0.00029713038,0.000021476346,0.000016155207,1.2426335e-7,0.00007525988,0.93747425,0.0004145292],"about_ca_topic_score_codex":0.000013046587,"about_ca_topic_score_gemma":0.0000015710202,"teacher_disagreement_score":0.9011531,"about_ca_system_score_codex":0.00043309105,"about_ca_system_score_gemma":0.0018616676,"threshold_uncertainty_score":0.999696},"labels":[],"label_agreement":null},{"id":"W3008135363","doi":"10.1093/cid/ciaa163","title":"Waning Vaccine Immunity and Vaccination Responses in Children Treated for Acute Lymphoblastic Leukemia: A Canadian Immunization Research Network Study","year":2020,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary; BC Children's Hospital; McMaster University; Children's Hospital of Eastern Ontario; McGill University Health Centre; University of Ottawa; University of Alberta; Université de Montréal; Hospital for Sick Children; Alberta Children's Hospital; Izaak Walton Killam Health Centre; Stollery Children's Hospital; Nova Scotia Health Authority; SickKids Foundation; Royal University Hospital; University of Toronto; Centre Hospitalier Universitaire Sainte-Justine; Dalhousie University","funders":"Canadian Institutes of Health Research; Public Health Agency of Canada; Pfizer","keywords":"Vaccination; Immunization; Medicine; Lymphoblastic Leukemia; Immunity; Immunology; Pediatrics; Leukemia; Immune system","score_opus":0.058576402737637534,"score_gpt":0.40589814449896977,"score_spread":0.34732174176133224,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3008135363","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99650687,0.00021281974,0.0000719151,0.000776093,0.00009054011,0.0020380756,0.000053754717,0.00013554252,0.00011438549],"genre_scores_gemma":[0.99813867,0.00032457715,0.0000040507825,0.00075810816,0.00039014922,0.00019924558,0.00011439637,0.00003611599,0.00003471687],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99747044,0.0008926144,0.00059415906,0.00041524484,0.00016557818,0.00046197898],"domain_scores_gemma":[0.9972351,0.001417611,0.000097177915,0.00027020447,0.0003525219,0.0006273882],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009469334,0.00018134377,0.00047050964,0.0003373127,0.0006667165,0.000066748886,0.000091230424,0.0001751826,0.000036429537],"category_scores_gemma":[0.004925418,0.00016498094,0.00011026087,0.0010943515,0.000063019244,0.00012677445,0.00008585941,0.0004977513,0.000012576435],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041614746,0.0005284779,0.9958053,0.000026893893,0.00028199717,0.00003892017,0.00012655709,0.00021664833,0.00006459336,0.000023447388,0.0005044459,0.0019665253],"study_design_scores_gemma":[0.005908869,0.0036017287,0.987849,0.000056693218,0.0005364141,0.000020294403,0.00015217549,0.0014195611,0.0000064318892,0.000105146486,0.00019354426,0.00015011897],"about_ca_topic_score_codex":0.0043932125,"about_ca_topic_score_gemma":0.009804778,"teacher_disagreement_score":0.007956324,"about_ca_system_score_codex":0.0004468005,"about_ca_system_score_gemma":0.0009778746,"threshold_uncertainty_score":0.67277277},"labels":[],"label_agreement":null},{"id":"W3009231746","doi":"10.1007/978-3-030-36966-8_3","title":"Issues in Community-Acquired Pneumonia","year":2020,"lang":"en","type":"book-chapter","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital; University of Toronto","funders":"","keywords":"Community-acquired pneumonia; Pneumonia; Intensive care medicine; Medicine; Etiology; Empiric therapy; Antimicrobial; Antibiotics; Internal medicine; Pathology; Alternative medicine; Biology; Microbiology","score_opus":0.04124050838964006,"score_gpt":0.29962004367538136,"score_spread":0.2583795352857413,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3009231746","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0013033543,0.0002948521,0.000005631372,0.008957671,0.00020001031,0.00036992115,0.000015513595,0.0002258993,0.98862714],"genre_scores_gemma":[0.050161134,0.00045302307,0.000045036853,0.0071562272,0.00035147063,0.00001677599,0.00008569695,0.00009414241,0.9416365],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","domain_scores_codex":[0.9990395,0.000043884454,0.00035443032,0.0002034733,0.0001931453,0.00016561676],"domain_scores_gemma":[0.9991367,0.000062977306,0.000076612705,0.0004931366,0.000056216777,0.00017439554],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00010511894,0.0002873915,0.00061236095,0.0002267215,0.00010883702,0.000016450103,0.00012304656,0.00038323837,0.0014316808],"category_scores_gemma":[0.000040136634,0.00024339496,0.00017932431,0.00005170648,0.00011747208,0.000036740545,0.00009988501,0.0009584502,0.0011846634],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00055362744,0.0019996723,0.023629623,0.0048279776,0.0025819158,0.007281778,0.0073113088,0.000017552415,0.22662362,0.56877697,0.12285772,0.033538263],"study_design_scores_gemma":[0.0005406028,0.00044888296,0.002586619,0.00041439035,0.0000998882,0.00009082551,0.00007007458,0.000010508036,0.00014190162,0.0027685303,0.9925523,0.00027550152],"about_ca_topic_score_codex":0.00012889621,"about_ca_topic_score_gemma":0.0002555664,"teacher_disagreement_score":0.86969453,"about_ca_system_score_codex":0.00009016736,"about_ca_system_score_gemma":0.00011359423,"threshold_uncertainty_score":0.999593},"labels":[],"label_agreement":null},{"id":"W3010813312","doi":"10.1542/peds.2019-0377","title":"Efficacy and Effectiveness of the PCV-10 and PCV-13 Vaccines Against Invasive Pneumococcal Disease","year":2020,"lang":"en","type":"review","venue":"PEDIATRICS","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Francis Xavier University; Centre Hospitalier Universitaire Sainte-Justine; Université de Montréal; McGill University Health Centre","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Pediatrics; Confidence interval; Pneumococcal disease; Incidence (geometry); Pneumococcal infections; Internal medicine; Streptococcus pneumoniae; Antibiotics","score_opus":0.025585405314869216,"score_gpt":0.30478706587715054,"score_spread":0.27920166056228135,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3010813312","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.03632226,0.96091485,0.000003430003,0.00015704396,0.00035904092,0.0018904643,0.00013501509,0.000046729834,0.00017114234],"genre_scores_gemma":[0.0071305707,0.9917973,0.000002766768,0.000079930964,0.00073877693,0.00010160527,0.000042393865,0.000055306686,0.00005132156],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982424,0.00037493216,0.00046734716,0.00046119787,0.00023439672,0.00021974079],"domain_scores_gemma":[0.9971924,0.0015656796,0.00032006897,0.00039818883,0.000117599615,0.00040605126],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002133064,0.0004125903,0.0014117694,0.00019664508,0.00014867108,0.000026420908,0.00014902838,0.00025196988,0.000008825646],"category_scores_gemma":[0.0017228993,0.00025066166,0.00036833322,0.0007194311,0.00012548531,0.000045434987,0.00025733767,0.0005345698,0.000015774542],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003022302,0.0008120032,0.091570735,0.36975828,0.0007792371,0.0004354795,0.0002096567,0.00000860977,0.00023033768,0.0001109614,0.0007519247,0.53503054],"study_design_scores_gemma":[0.0017658361,0.00029653937,0.10321181,0.006944387,0.008403006,0.00010797351,0.000011486115,0.0000052725914,0.0000054872635,0.000025198597,0.8787483,0.0004747215],"about_ca_topic_score_codex":0.0000032523114,"about_ca_topic_score_gemma":0.0000020768339,"teacher_disagreement_score":0.8779963,"about_ca_system_score_codex":0.00005819531,"about_ca_system_score_gemma":0.0008180248,"threshold_uncertainty_score":0.9999946},"labels":[],"label_agreement":null},{"id":"W3011259367","doi":"10.1136/bmjresp-2019-000550","title":"Age-stratified burden of pneumococcal community acquired pneumonia in hospitalised Canadian adults from 2010 to 2015","year":2020,"lang":"en","type":"article","venue":"BMJ Open Respiratory Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Saint John Regional Hospital; Ottawa Hospital; McGill University Health Centre; Public Health Agency of Canada; University of Ottawa; McMaster University; Mount Sinai Hospital; Vancouver General Hospital; Public Health Ontario; Centre Hospitalier Universitaire de Sherbrooke; University of British Columbia; Hamilton General Hospital; Centre hospitalier universitaire de Québec; Nova Scotia Health Authority; University of Toronto; Dalhousie University","funders":"Canadian Institutes of Health Research; Public Health Agency; Pfizer Canada; Canadian Immunization Research Network; Public Health Agency of Canada; Pfizer","keywords":"Medicine; Pneumonia; Pneumococcal conjugate vaccine; Community-acquired pneumonia; Pediatrics; Cohort; Streptococcus pneumoniae; Pneumococcal pneumonia; Internal medicine","score_opus":0.24065039483023135,"score_gpt":0.4559094263588966,"score_spread":0.21525903152866524,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3011259367","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96576667,0.000057744746,0.000002174359,0.018861346,0.00016043031,0.0064005977,0.0002697622,0.000043466556,0.0084378],"genre_scores_gemma":[0.99514294,0.0000059559993,0.00006092583,0.003217562,0.0003341109,0.00075110217,0.00007136463,0.00006566368,0.00035040136],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9943343,0.0020174119,0.0009790031,0.0006535429,0.0010391908,0.0009765897],"domain_scores_gemma":[0.99512106,0.00045292114,0.00013474814,0.0014443237,0.0007190665,0.0021278602],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0030698455,0.0003210319,0.0009032059,0.0007699129,0.00048655234,0.00019186172,0.0015548364,0.00038121841,0.0005502977],"category_scores_gemma":[0.002326917,0.00030635326,0.00014152948,0.0019522548,0.00039481092,0.00029137207,0.00083303347,0.0016148285,0.0005518524],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019995384,0.00048774946,0.18924582,0.00026391755,0.00013808669,0.0015349298,0.009539372,0.00012788715,0.7754274,0.0000610303,0.019037275,0.002136994],"study_design_scores_gemma":[0.00491348,0.0036583408,0.90940684,0.000807635,0.000033322674,0.000009546721,0.006310559,0.00032792223,0.009336532,0.00008311674,0.06455921,0.00055349665],"about_ca_topic_score_codex":0.3787931,"about_ca_topic_score_gemma":0.30504045,"teacher_disagreement_score":0.76609087,"about_ca_system_score_codex":0.00040414566,"about_ca_system_score_gemma":0.0034235346,"threshold_uncertainty_score":0.99993885},"labels":[],"label_agreement":null},{"id":"W3012178574","doi":"10.1139/cjm-2019-0481","title":"Cytosolic mtDNA released from pneumolysin-damaged mitochondria triggers IFN-β production in epithelial cells","year":2020,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Pneumolysin; Mitochondrion; Biology; Microbiology; Cytosol; In vivo; In vitro; Interferon; Streptococcus pneumoniae; Cell biology; Mitochondrial DNA; Cytoplasm; Epithelium; Molecular biology; Gene; Immunology; Biochemistry; Genetics","score_opus":0.015456835481741331,"score_gpt":0.22131025007891453,"score_spread":0.20585341459717318,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3012178574","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9836812,0.00019221216,0.000033533095,0.0143789,0.0012312338,0.00021321958,0.000098079836,0.000008327216,0.00016327604],"genre_scores_gemma":[0.9939425,0.00002845268,0.00013473816,0.004745252,0.0010411282,0.0000023237315,0.00003105415,0.000017481087,0.00005705779],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986606,0.0002620927,0.00048950163,0.00021713832,0.000049882798,0.00032074933],"domain_scores_gemma":[0.9988707,0.000053682837,0.00021201331,0.00015454464,0.00012511578,0.0005839891],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016477458,0.00015238227,0.0004417671,0.00041538884,0.00008094399,0.000015142894,0.00015421008,0.00020064635,0.00020265701],"category_scores_gemma":[0.0003048661,0.00013282672,0.00017101744,0.0003505303,0.00013168936,0.00006767994,0.0000046895093,0.00064153236,0.000088058965],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000933402,0.00003785941,0.004776345,0.00001304045,0.000060016147,0.0008773556,0.0010436116,0.000020628364,0.98633844,0.0000025518045,0.006304364,0.00043242282],"study_design_scores_gemma":[0.006302472,0.002289205,0.040048942,0.0002182125,0.00041182144,0.00408515,0.0011190949,0.000011057352,0.5375969,0.00007705668,0.4073441,0.0004960204],"about_ca_topic_score_codex":0.0017186217,"about_ca_topic_score_gemma":0.007356818,"teacher_disagreement_score":0.44874159,"about_ca_system_score_codex":0.0001699983,"about_ca_system_score_gemma":0.0015274021,"threshold_uncertainty_score":0.54165167},"labels":[],"label_agreement":null},{"id":"W3014214532","doi":"10.1513/annalsats.202003-192sd","title":"The REMAP-CAP (Randomized Embedded Multifactorial Adaptive Platform for Community-acquired Pneumonia) Study. Rationale and Design","year":2020,"lang":"en","type":"article","venue":"Annals of the American Thoracic Society","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":445,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; University of Toronto; Université de Sherbrooke; St. Michael's Hospital","funders":"National Health and Medical Research Council; Medical Research Council; National Institute for Health and Care Research","keywords":"Medicine; Community-acquired pneumonia; Randomized controlled trial; Randomization; Intensive care medicine; Psychological intervention; Pneumonia; Intensive care unit; Internal medicine","score_opus":0.24207821693252107,"score_gpt":0.41478377639633685,"score_spread":0.17270555946381577,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3014214532","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9765476,0.00015648858,0.004031281,0.015138372,0.00020886418,0.0037559802,0.000045407996,0.00006355266,0.000052477655],"genre_scores_gemma":[0.9942334,0.0001969179,0.00088346266,0.0040649287,0.00024691463,0.00026900115,0.0000049375667,0.000025707783,0.000074716394],"study_design_codex":"bench_or_experimental","study_design_gemma":"qualitative","domain_scores_codex":[0.9980222,0.0008391124,0.0004095369,0.00018757835,0.00030460846,0.00023695832],"domain_scores_gemma":[0.995397,0.0032159444,0.0005210115,0.00040727464,0.0003252075,0.00013359138],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016048215,0.00019100239,0.0007109575,0.000015326634,0.0010590077,0.000032853597,0.000240448,0.00005176335,0.000002935596],"category_scores_gemma":[0.0013612612,0.00010541716,0.0005765445,0.000331386,0.0011706431,0.00008343568,0.00012082112,0.00029775102,0.0000015290312],"study_design_candidate":"qualitative","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.26510274,0.003701447,0.009928807,0.00052989915,0.013169029,0.000006908873,0.19841965,0.0010113217,0.39183488,0.0007922247,0.048792377,0.06671072],"study_design_scores_gemma":[0.22432366,0.028348587,0.08319481,0.00058707595,0.00586129,0.00010919722,0.43518466,0.088392854,0.084867425,0.008128572,0.038390636,0.002611241],"about_ca_topic_score_codex":0.000075456766,"about_ca_topic_score_gemma":0.000009254095,"teacher_disagreement_score":0.30696747,"about_ca_system_score_codex":0.000019450626,"about_ca_system_score_gemma":0.00015661861,"threshold_uncertainty_score":0.8145138},"labels":[],"label_agreement":null},{"id":"W3014594632","doi":"10.3390/pathogens9040259","title":"A Systematic Review of Studies Published between 2016 and 2019 on the Effectiveness and Efficacy of Pneumococcal Vaccination on Pneumonia and Invasive Pneumococcal Disease in an Elderly Population","year":2020,"lang":"en","type":"review","venue":"Pathogens","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Pneumococcal pneumonia; Pneumococcal disease; Pneumonia; Medicine; Intensive care medicine; Vaccination; Pneumococcal vaccination; Streptococcus pneumoniae; Disease; Pneumococcal infections; Immunology; Microbiology; Internal medicine; Biology; Antibiotics","score_opus":0.041424885643024614,"score_gpt":0.35270437929620174,"score_spread":0.31127949365317714,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3014594632","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.15952466,0.8340287,0.0000010975571,0.00027912576,0.00005957517,0.0059190476,0.00015563164,0.000020625721,0.000011493805],"genre_scores_gemma":[0.14923488,0.85013056,0.0000016852329,0.000051680705,0.00006073678,0.00039128214,0.0000880737,0.000037862017,0.0000032524897],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.995726,0.00203409,0.0011463963,0.0005837061,0.0003184459,0.00019138036],"domain_scores_gemma":[0.9946077,0.0036982682,0.00078702474,0.00048398064,0.00019415758,0.0002288624],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0013243394,0.00046405592,0.0032515174,0.00037510385,0.00009621717,0.000028636083,0.00011062935,0.00018754248,0.0000025318698],"category_scores_gemma":[0.004764406,0.00026806712,0.00024642728,0.0004819794,0.000094951116,0.0001256369,0.00009057147,0.00041270643,0.000002406513],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047581492,0.00018734153,0.008656884,0.9650341,0.00040105535,0.000030836305,0.000121951605,4.4083072e-7,0.00030668592,0.00013915118,0.0000029850487,0.025070952],"study_design_scores_gemma":[0.00060602376,0.0012281274,0.34672046,0.6461471,0.004702991,0.000026257616,0.000029321489,0.0000037960583,0.0000057483708,0.000056620695,0.00022842664,0.00024516552],"about_ca_topic_score_codex":0.000008090152,"about_ca_topic_score_gemma":0.0000068275144,"teacher_disagreement_score":0.33806357,"about_ca_system_score_codex":0.00011495267,"about_ca_system_score_gemma":0.00018660881,"threshold_uncertainty_score":0.9999772},"labels":[],"label_agreement":null},{"id":"W3015254618","doi":"10.1007/s40121-020-00294-6","title":"Health and Economic Impact of Routine Pediatric Pneumococcal Immunization Programs in Canada: A Retrospective Analysis","year":2020,"lang":"en","type":"article","venue":"Infectious Diseases and Therapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer","keywords":"Medicine; Pneumonia; Vaccination; Incidence (geometry); Pneumococcal conjugate vaccine; Pneumococcal pneumonia; Pneumococcal disease; Population; Health care; Pediatrics; Public health; Pneumococcal infections; Immunization program; Immunization; Environmental health; Streptococcus pneumoniae; Immunology; Internal medicine; Economic growth","score_opus":0.01340569884174015,"score_gpt":0.26568864763012967,"score_spread":0.2522829487883895,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3015254618","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974138,0.0016889928,0.000016857102,0.00044225832,0.000024306317,0.000324804,0.00004039075,0.000024893377,0.000023701112],"genre_scores_gemma":[0.9958068,0.0038024914,8.7409995e-7,0.00026773073,0.00007095445,0.0000148568015,0.000025707199,0.000009592115,9.704173e-7],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993503,0.000049011505,0.0002208283,0.0001775684,0.00006377492,0.00013853291],"domain_scores_gemma":[0.9994695,0.000019788158,0.000113982824,0.000086727865,0.000034177763,0.0002757836],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000034917233,0.00011050417,0.0003929476,0.00014495695,0.000058887756,0.000012863439,0.000018657842,0.000027146463,0.000019823525],"category_scores_gemma":[0.000016482702,0.00008760049,0.00010661043,0.0005139802,0.000030528463,0.000046810106,0.000011637306,0.000087176944,3.0353021e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006369114,0.000093154995,0.9958064,0.000030373005,0.0003305893,0.0000038027827,0.00021955317,0.000276727,0.000080075624,0.00001550772,0.0000056388444,0.0030745114],"study_design_scores_gemma":[0.0012844544,0.0012670255,0.9957707,0.000006360995,0.00013129487,0.000008205818,0.000059801354,0.0013454534,0.0000020658308,0.000023713359,0.000026358684,0.00007456256],"about_ca_topic_score_codex":0.4072913,"about_ca_topic_score_gemma":0.14250779,"teacher_disagreement_score":0.2647835,"about_ca_system_score_codex":0.00044751368,"about_ca_system_score_gemma":0.0014174575,"threshold_uncertainty_score":0.8731392},"labels":[],"label_agreement":null},{"id":"W3016034466","doi":"10.1093/cid/ciz713","title":"Reply to Hughes et al","year":2019,"lang":"fr","type":"letter","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St Joseph's Health Centre; University of Toronto; Public Health Ontario","funders":"","keywords":"Philosophy; Psychology","score_opus":0.0527407653065581,"score_gpt":0.4043720759157353,"score_spread":0.35163131060917724,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3016034466","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.05737031,0.0018275678,0.00021335231,0.8841492,0.034891874,0.0023110854,0.0008558985,0.00077241973,0.017608274],"genre_scores_gemma":[0.026940988,0.001487864,0.000006229485,0.9374437,0.014734962,0.00025752984,0.0003823019,0.00021934771,0.018527117],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9925755,0.0014718736,0.0020738093,0.0018324859,0.00073099684,0.0013153333],"domain_scores_gemma":[0.99023235,0.005411548,0.0005653924,0.0019539737,0.00047477664,0.0013619574],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00088562287,0.0009854905,0.0021449176,0.0004711765,0.00035775427,0.000202533,0.0004017457,0.0012062382,0.0027087857],"category_scores_gemma":[0.007844768,0.0008827872,0.0021189265,0.0006734076,0.0007440278,0.00021346037,0.00038329177,0.0040073646,0.028994577],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000307525,0.0012956716,0.3813511,0.00031925342,0.0006288845,0.0005705716,0.000021824531,0.00007140336,0.000035698642,0.00012706335,0.61241007,0.003137728],"study_design_scores_gemma":[0.001475741,0.0026874153,0.27559835,0.0010967264,0.0013358892,0.000066036766,0.00001364201,0.000021889013,0.000003852322,0.00015776909,0.7168257,0.0007169623],"about_ca_topic_score_codex":0.00012824382,"about_ca_topic_score_gemma":0.000032007112,"teacher_disagreement_score":0.105752766,"about_ca_system_score_codex":0.00040032054,"about_ca_system_score_gemma":0.0015863837,"threshold_uncertainty_score":0.9993623},"labels":[],"label_agreement":null},{"id":"W301731979","doi":"10.1097/inf.0000000000000697","title":"Genetic Analysis of Invasive Pneumococcal Isolates from Children in Ontario, Canada, 2007–2012","year":2015,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Mount Sinai Hospital; University of Toronto; Public Health Ontario; Toronto Public Health","funders":"","keywords":"Multilocus sequence typing; Serotype; Pneumococcal conjugate vaccine; Biology; Genotype; Genetic diversity; Population; Streptococcus pneumoniae; Genetics; Typing; Virology; Medicine; Gene; Antibiotics; Environmental health","score_opus":0.0099951590063174,"score_gpt":0.22274573300435427,"score_spread":0.21275057399803687,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W301731979","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975317,0.00080162636,0.00003829829,0.00036215273,0.00051756867,0.00024330003,0.00005519039,0.000016176336,0.0004339852],"genre_scores_gemma":[0.9983791,0.0001809051,0.0000072767734,0.00045209756,0.0008227825,0.000010839923,0.000015461255,0.000016384884,0.00011512375],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983802,0.00017406694,0.00054100266,0.00018330246,0.00040181822,0.00031962787],"domain_scores_gemma":[0.9982623,0.00018949748,0.00030282847,0.00030377583,0.00024464694,0.0006969432],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023594877,0.00019231334,0.00044383388,0.00058936153,0.00015554225,0.00002830237,0.00014368561,0.0000731433,0.0006686034],"category_scores_gemma":[0.0002850898,0.00013260593,0.0002686606,0.0009800768,0.000054326843,0.0000967053,0.000047150854,0.0006535703,0.000013061334],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006856873,0.00024707214,0.99074286,0.000004860273,0.00079285726,0.000103571874,0.00025792842,0.0056166365,0.00007962438,0.0000014565301,0.0020424314,0.000042145217],"study_design_scores_gemma":[0.0011279064,0.00012279571,0.99179834,0.000009422276,0.006007813,0.00019691039,0.000051631632,0.0001438725,0.0000036737777,0.00020830338,0.00018891499,0.00014042742],"about_ca_topic_score_codex":0.78795123,"about_ca_topic_score_gemma":0.9497808,"teacher_disagreement_score":0.16182955,"about_ca_system_score_codex":0.0007531838,"about_ca_system_score_gemma":0.0064512,"threshold_uncertainty_score":0.9991813},"labels":[],"label_agreement":null},{"id":"W3020812604","doi":"10.1093/ofid/ofaa146","title":"Adherence to Treatment Guideline Improves Patient Outcomes in a Prospective Cohort of Adults Hospitalized for Community-Acquired Pneumonia","year":2020,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Health and Medical Research Fund; Pfizer","keywords":"Medicine; Community-acquired pneumonia; Internal medicine; Mycoplasma pneumoniae; Pneumonia; Pneumonia severity index; Interquartile range; Prospective cohort study; Hazard ratio; Sputum culture; Streptococcus pneumoniae; Sputum; Intensive care medicine; Antibiotics; Confidence interval; Pathology; Tuberculosis","score_opus":0.02009990625509729,"score_gpt":0.3202597730261149,"score_spread":0.30015986677101764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3020812604","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9875963,0.000044753917,0.00009561605,0.002586813,0.00014074103,0.007680526,0.00043839516,0.000103959545,0.001312909],"genre_scores_gemma":[0.9932726,0.000017739585,0.00010751775,0.0033085048,0.00002141984,0.003063748,0.000101393045,0.000039175073,0.000067927125],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99834067,0.000105076,0.0006757394,0.00036499082,0.00017821099,0.00033533422],"domain_scores_gemma":[0.998555,0.0001218305,0.0002156687,0.00042077544,0.0003009761,0.0003857202],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008154738,0.00029683075,0.0008345799,0.00012843992,0.0002329499,0.00004954,0.0001989473,0.00007314232,0.00004561577],"category_scores_gemma":[0.00060584827,0.00023107821,0.00026314444,0.0003856647,0.000078354686,0.00017603031,0.00021982787,0.00009316768,0.000015713838],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008602899,0.0027701424,0.9820419,0.000089134686,0.00029494544,0.000010233808,0.0013453019,0.000041792297,0.006309731,0.000077439,0.0003648571,0.0057942476],"study_design_scores_gemma":[0.008446665,0.027023917,0.95687765,0.00018701256,0.00030166615,0.000006839924,0.0011868847,0.0001789444,0.0020431576,0.00026564824,0.0031521486,0.00032945783],"about_ca_topic_score_codex":0.0027980031,"about_ca_topic_score_gemma":0.0014399164,"teacher_disagreement_score":0.025164228,"about_ca_system_score_codex":0.00028885578,"about_ca_system_score_gemma":0.00026235127,"threshold_uncertainty_score":0.9423096},"labels":[],"label_agreement":null},{"id":"W3022591408","doi":"","title":"Community-acquired pneumonia.","year":2002,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Community-acquired pneumonia; Pneumonia; Intensive care medicine; Psychological intervention; Emergency medicine; Internal medicine; Nursing","score_opus":0.07253419548833702,"score_gpt":0.2444205880553262,"score_spread":0.17188639256698918,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3022591408","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8746913,0.00013201307,0.000014228025,0.007206474,0.00032597032,0.0005375373,0.0000041807734,0.0002644844,0.11682382],"genre_scores_gemma":[0.9868299,0.000033181357,0.000008209615,0.0026203585,0.00014030906,0.0006115017,0.000003143157,0.00001627941,0.0097371675],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.99927205,0.000087684995,0.00014324205,0.00009172068,0.0001244241,0.00028086937],"domain_scores_gemma":[0.9993311,0.000038168357,0.000032208663,0.0003588829,0.00003824672,0.00020138444],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016130495,0.000090827634,0.00015556047,0.000093381255,0.0002367858,0.00001672855,0.00007482777,0.0000677099,0.00018429077],"category_scores_gemma":[0.00011290386,0.0000761167,0.000082200466,0.00020754266,0.00007721085,0.00006070711,0.000032162585,0.00021371996,0.00024931008],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004597964,0.002900244,0.19852163,0.00021426662,0.0003770574,0.00022889358,0.0016185062,0.000009870901,0.03127508,0.000559947,0.040008813,0.7242397],"study_design_scores_gemma":[0.00057682744,0.000050256793,0.7207944,0.00000652712,0.00004489498,0.00015494297,0.000053477757,0.000038075745,0.00050255406,0.00003966224,0.27764767,0.000090745896],"about_ca_topic_score_codex":0.000016244823,"about_ca_topic_score_gemma":0.0000075384514,"teacher_disagreement_score":0.7241489,"about_ca_system_score_codex":0.00004886737,"about_ca_system_score_gemma":0.0000054906695,"threshold_uncertainty_score":0.32044598},"labels":[],"label_agreement":null},{"id":"W3022887886","doi":"10.1136/bmjpo-2020-000640","title":"Paediatric critical illness associated with respiratory infection: a single-centre, retrospective cohort study","year":2020,"lang":"en","type":"article","venue":"BMJ Paediatrics Open","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Joseph’s Healthcare Hamilton; University of Toronto; Public Health Ontario; McMaster University","funders":"McMaster University; Hamilton Health Sciences","keywords":"Medicine; Mycoplasma pneumoniae; Pneumonia; Internal medicine; Cohort; Chlamydia; Retrospective cohort study; Mycoplasma pneumonia; Viral pneumonia; Respiratory infection; Chlamydophila pneumoniae; Respiratory system; Pediatrics; Immunology; Coronavirus disease 2019 (COVID-19); Disease; Infectious disease (medical specialty)","score_opus":0.05113787730941739,"score_gpt":0.3315882489269227,"score_spread":0.2804503716175053,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3022887886","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97547793,0.00010955283,0.00023362855,0.004154767,0.00067654677,0.0073298076,0.00006255694,0.00040365654,0.011551566],"genre_scores_gemma":[0.9941739,0.000013378353,0.00004743232,0.0037187615,0.0013376187,0.0004221539,0.00002393364,0.00008192921,0.00018088923],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.996477,0.00045424598,0.00066901883,0.0008818418,0.0009680183,0.0005498374],"domain_scores_gemma":[0.99714285,0.00043166828,0.00027667003,0.0005264535,0.0009193269,0.0007030238],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010401271,0.00038853037,0.00087928306,0.0002687995,0.00051621563,0.00025092586,0.0003051091,0.00025994857,0.00026804514],"category_scores_gemma":[0.006126498,0.00032269486,0.00017084449,0.002965602,0.00014891537,0.00040683264,0.00037676,0.0007527602,0.00017910944],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019307903,0.0022401006,0.9894971,0.00004347049,0.00030273088,0.0005366125,0.00048500823,0.000016861239,0.00011787163,0.00009148967,0.006189924,0.0002857055],"study_design_scores_gemma":[0.0044193924,0.004178692,0.9813952,0.000037319554,0.0011399061,0.000030943145,0.00046364145,0.00006219854,0.000040890085,0.000028896087,0.007675645,0.000527287],"about_ca_topic_score_codex":0.000065077395,"about_ca_topic_score_gemma":0.00011841074,"teacher_disagreement_score":0.018695984,"about_ca_system_score_codex":0.00052067934,"about_ca_system_score_gemma":0.00069039664,"threshold_uncertainty_score":0.9999225},"labels":[],"label_agreement":null},{"id":"W3026376256","doi":"10.1016/s2352-4642(20)30090-0","title":"Acute lower respiratory infections in Indigenous infants in Australia's Northern Territory across three eras of pneumococcal conjugate vaccine use (2006–15): a population-based cohort study","year":2020,"lang":"en","type":"article","venue":"The Lancet Child & Adolescent Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Health and Medical Research Council; Balnaves Foundation; Charles Darwin University; Australian Government; Menzies School of Health Research; BC Children’s Hospital Foundation","keywords":"Pneumococcal conjugate vaccine; Medicine; Pneumonia; Pediatrics; Population; Incidence (geometry); Cohort; Streptococcus pneumoniae; Internal medicine; Environmental health; Biology","score_opus":0.039283188864078306,"score_gpt":0.3407695854232711,"score_spread":0.30148639655919285,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3026376256","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9900825,0.00009641996,0.00001838592,0.0055219242,0.0003527066,0.0036082447,0.00019274444,0.00011351674,0.000013555391],"genre_scores_gemma":[0.9900401,0.00004755232,0.000004629103,0.009023986,0.00068972615,0.00009609739,0.000045743942,0.000046553367,0.0000055820424],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9968301,0.000420851,0.0010650809,0.00050603645,0.00041995416,0.0007579424],"domain_scores_gemma":[0.99839675,0.00008438356,0.00038740213,0.000711769,0.00010213024,0.00031755364],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00083405105,0.00033875753,0.0010549288,0.00018456235,0.00030802423,0.00003358273,0.00023329335,0.0001444899,0.00002196301],"category_scores_gemma":[0.000115920746,0.0002622412,0.00013655201,0.0007848612,0.000076015756,0.0001395078,0.00007538197,0.0015853418,0.000021071828],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054698036,0.0021304642,0.99310523,0.0001747471,0.000103449696,0.000060216087,0.0017789761,0.0013129049,0.00042008472,0.0000026552566,0.00011547472,0.00024883455],"study_design_scores_gemma":[0.005641581,0.0013123847,0.99083346,0.00044824384,0.00006442716,0.000018168139,0.00008870898,0.00008082392,0.000027108947,0.0000043012606,0.0012649455,0.00021583952],"about_ca_topic_score_codex":0.006341389,"about_ca_topic_score_gemma":0.08281113,"teacher_disagreement_score":0.07646974,"about_ca_system_score_codex":0.00042482498,"about_ca_system_score_gemma":0.00047830876,"threshold_uncertainty_score":0.99998295},"labels":[],"label_agreement":null},{"id":"W3026523844","doi":"10.33321/cdi.2020.44.38","title":"Invasive Pneumococcal Disease Surveillance, 1 April to 30 June 2019","year":2020,"lang":"en","type":"article","venue":"Communicable Diseases Intelligence","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"NSW Health Pathology; Queensland Health","keywords":"Pneumococcal disease; Serotype; Pneumococcal conjugate vaccine; Quarter (Canadian coin); Medicine; Conjugate vaccine; Streptococcus pneumoniae; Pediatrics; Pneumococcal infections; Virology; Immunization; Immunology; Biology; Microbiology; Antibody; Geography; Antibiotics","score_opus":0.037565730898581805,"score_gpt":0.30551925331604063,"score_spread":0.26795352241745884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3026523844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.83470887,0.014492076,0.011515775,0.11119227,0.0020102947,0.004990263,0.0014255912,0.002059177,0.017605664],"genre_scores_gemma":[0.98546493,0.001271049,0.000088664034,0.012038949,0.0002052142,0.00010642595,0.00009460062,0.00004513191,0.00068502116],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.99818146,0.00018346557,0.00042335846,0.00044595692,0.0003220478,0.00044369488],"domain_scores_gemma":[0.9960412,0.0003853139,0.0000814113,0.0013402126,0.00023041484,0.0019214966],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000095034244,0.00028513005,0.0004819137,0.00010323449,0.00029859052,0.000059847967,0.0006945973,0.000072161354,0.0010583998],"category_scores_gemma":[0.0016994579,0.0002581062,0.0002657106,0.00068613584,0.00024403002,0.00012277224,0.0005830777,0.0003923922,0.0026348797],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001974913,0.0031703727,0.8379798,0.0012565835,0.0005625302,0.0010414596,0.001523279,0.006769915,0.038887627,0.002981278,0.087812096,0.016040124],"study_design_scores_gemma":[0.0010324764,0.0013172473,0.4102732,0.000634263,0.0004888234,0.0000424118,0.0009990818,0.003108872,0.0031720917,0.0008743464,0.576591,0.0014661507],"about_ca_topic_score_codex":0.000031917298,"about_ca_topic_score_gemma":0.000022602691,"teacher_disagreement_score":0.48877895,"about_ca_system_score_codex":0.00008037441,"about_ca_system_score_gemma":0.00045483798,"threshold_uncertainty_score":0.9999871},"labels":[],"label_agreement":null},{"id":"W3027806584","doi":"10.1016/s1473-3099(20)30400-x","title":"The uncertainty of tuberculosis diagnosis","year":2020,"lang":"en","type":"letter","venue":"The Lancet Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Medical Research Council; Department for International Development; Sir Halley Stewart Trust; Government of Canada; Wellcome Trust; World Health Organization; Alexander and Margaret Stewart Trust; Bill and Melinda Gates Foundation","keywords":"Tuberculosis; Medicine; Intensive care medicine; Antibiotics; Disease; Mycobacterium tuberculosis; Tuberculosis diagnosis; Medical diagnosis; Pediatrics; Internal medicine; Pathology","score_opus":0.02425310342456961,"score_gpt":0.2801324530464931,"score_spread":0.2558793496219235,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3027806584","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.009610739,0.0018026093,0.0000046696364,0.98123676,0.0008260256,0.0007724277,0.0004913209,0.00036399605,0.0048914743],"genre_scores_gemma":[0.14838938,0.004274074,6.1569267e-7,0.8358948,0.010258688,0.0006283925,0.00014094714,0.00007042651,0.0003426207],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99816483,0.0002853833,0.0003732994,0.0003055276,0.00043437822,0.0004365687],"domain_scores_gemma":[0.99723715,0.0012849128,0.0002615441,0.000935738,0.00016638686,0.00011429609],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010247437,0.00033237203,0.0007757268,0.00007091532,0.00055756833,0.00006212475,0.00033219554,0.00024189275,0.0001297471],"category_scores_gemma":[0.0006214615,0.0001641927,0.00056967564,0.0003921816,0.00051603845,0.000034048466,0.00010712721,0.0013902114,0.000111540576],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028182856,0.00008255427,0.07590749,0.00037125088,0.00068151194,0.000106336796,0.000048240217,0.000028627006,0.000032017466,0.00005700135,0.9209231,0.0017336773],"study_design_scores_gemma":[0.0005454921,0.00027111295,0.017602798,0.0001794669,0.0014842221,0.00005090015,0.000019608824,0.000020667396,0.000038641298,0.0010117288,0.9785809,0.00019444106],"about_ca_topic_score_codex":0.00011836656,"about_ca_topic_score_gemma":0.00003355116,"teacher_disagreement_score":0.14534189,"about_ca_system_score_codex":0.000106532614,"about_ca_system_score_gemma":0.00023569539,"threshold_uncertainty_score":0.66955835},"labels":[],"label_agreement":null},{"id":"W3031220311","doi":"10.1155/2020/1606783","title":"Magnitude and Predictors of Pneumonia among Under-Five Children in Ethiopia: A Systematic Review and Meta-Analysis","year":2020,"lang":"en","type":"review","venue":"Journal of Environmental and Public Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"College of Nursing, University of Saskatchewan","keywords":"Medicine; Pneumonia; Meta-analysis; Data extraction; MEDLINE; Demography; Statistics; Pediatrics; Mathematics; Internal medicine","score_opus":0.053322735415067185,"score_gpt":0.3254227344370536,"score_spread":0.27209999902198645,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3031220311","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0028469318,0.99212104,0.0000043056107,0.0035200336,0.000018227502,0.0013435418,0.0001300397,0.0000035106373,0.0000123871905],"genre_scores_gemma":[0.005788214,0.9926694,0.00001656956,0.0013902349,0.000032205175,0.000026905824,0.000017090335,0.000019193752,0.000040174302],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99659467,0.00074856717,0.0018334606,0.00025821896,0.00035058043,0.00021450239],"domain_scores_gemma":[0.99723345,0.00015569248,0.0017987015,0.00018274164,0.000015013673,0.00061440497],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012376403,0.0003248491,0.006790114,0.0005120369,0.00006513593,0.00002320797,0.000087164524,0.00017370885,0.000056440967],"category_scores_gemma":[0.00009121665,0.0001916823,0.00085390627,0.00036096564,0.00018844928,0.00012521673,0.00008227407,0.0007575166,0.000001102097],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000033193592,0.00043111658,0.014306061,0.8664338,0.11252341,0.00005895112,0.000368527,3.8037555e-7,0.00000213059,0.000017115279,0.000031651507,0.005823533],"study_design_scores_gemma":[0.00066139636,0.0013400448,0.09027452,0.034592796,0.8518506,0.0031002264,0.00025463908,0.0000017029217,4.3462034e-8,0.00000683339,0.017579878,0.0003372641],"about_ca_topic_score_codex":0.00003389817,"about_ca_topic_score_gemma":0.000020956526,"teacher_disagreement_score":0.831841,"about_ca_system_score_codex":0.00015139893,"about_ca_system_score_gemma":0.0002647922,"threshold_uncertainty_score":0.7816577},"labels":[],"label_agreement":null},{"id":"W3033127415","doi":"10.1101/2020.06.05.118836","title":"Negative frequency-dependent selection and asymmetrical transformation stabilise multi-strain bacterial population structures","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Engineering and Physical Sciences Research Council; Department for International Development; Government of Canada; National Institutes of Health; Imperial College London; National Institute of General Medical Sciences; Medical Research Council; Royal Society","keywords":"Biology; Locus (genetics); Genetics; Recombination; Population; Frequency-dependent selection; Selective sweep; Genome; Genetic variation; Genotype; Evolutionary biology; Haplotype; Gene","score_opus":0.02437279897465505,"score_gpt":0.2589542548663838,"score_spread":0.23458145589172874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3033127415","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99029213,0.000097718555,0.005180743,0.00078614504,0.0010321371,0.0015526508,0.0005972683,0.00045350575,0.000007704021],"genre_scores_gemma":[0.99532104,0.000089285706,0.0034640003,0.00021320314,0.0006821098,0.00013854662,0.000006136186,0.00008472137,9.437091e-7],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9974723,0.00022307118,0.00067489577,0.0008131241,0.00044359485,0.00037303957],"domain_scores_gemma":[0.99840647,0.00006250649,0.00034582234,0.00036787067,0.00038995524,0.00042735972],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00028344805,0.0005161273,0.0006482649,0.00046641802,0.00025457196,0.00018064774,0.000120107834,0.00072947034,0.000068915324],"category_scores_gemma":[0.00050503935,0.000502884,0.0001644353,0.0005973105,0.00008492982,0.00028230803,0.000086081855,0.0011254372,0.000012772828],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000093714254,0.0001475378,0.025295505,0.0005310199,0.0001962241,0.000021567752,0.00007168699,0.000060979775,0.97304994,0.0004993234,0.000012063174,0.000020416956],"study_design_scores_gemma":[0.001983271,0.00028554356,0.89586663,0.00018436456,0.00041457504,3.833211e-7,0.000012215708,0.0016814172,0.09866507,0.000025969044,0.00028397038,0.00059658056],"about_ca_topic_score_codex":0.00017790437,"about_ca_topic_score_gemma":0.000030078887,"teacher_disagreement_score":0.8743849,"about_ca_system_score_codex":0.000499911,"about_ca_system_score_gemma":0.00045889436,"threshold_uncertainty_score":0.99974227},"labels":[],"label_agreement":null},{"id":"W3033628048","doi":"10.46747/cfp.202012030001","title":"Challenges in the virtual assessment of COVID-19 infections in the community","year":2020,"lang":"en","type":"article","venue":"Canadian Family Physician","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; University of Toronto","funders":"","keywords":"Medicine; Pneumonia; Guideline; Intensive care medicine; Coronavirus disease 2019 (COVID-19); Septic shock; Respiratory failure; Viral pneumonia; Emergency medicine; Internal medicine; Sepsis; Infectious disease (medical specialty); Pathology; Disease","score_opus":0.133379957941665,"score_gpt":0.3447208557841371,"score_spread":0.2113408978424721,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3033628048","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.76692724,0.00021058222,0.000025348134,0.08244894,0.00009646049,0.0006279799,0.000052571566,0.000021320637,0.14958954],"genre_scores_gemma":[0.8027819,0.00006087404,0.0000014253966,0.19701275,0.00007865562,0.000045433902,0.000010546857,0.0000065289464,0.0000019316533],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987831,0.00058295595,0.00017545007,0.000108688095,0.00014922839,0.00020053981],"domain_scores_gemma":[0.9990694,0.00027385083,0.000042936885,0.00036559356,0.000026545431,0.0002216877],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042889148,0.00009943473,0.0001833254,0.0001505048,0.0002303822,0.000012599443,0.00022509345,0.000056724835,0.0000020458122],"category_scores_gemma":[0.000086574466,0.00006612994,0.00006911927,0.0005952569,0.00012129048,0.000046075835,0.000014383983,0.00071027986,0.000008345812],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008527206,0.007977586,0.284902,0.0015899024,0.00067978556,0.0012335896,0.25317976,0.007206456,0.053747043,0.18337746,0.054325175,0.15169595],"study_design_scores_gemma":[0.00083100237,0.0007524105,0.71920973,0.000047908034,0.00004322854,0.0000075611742,0.058158845,0.00017949835,0.000011218532,0.00036312293,0.22026698,0.00012851454],"about_ca_topic_score_codex":0.023742393,"about_ca_topic_score_gemma":0.21729554,"teacher_disagreement_score":0.4343077,"about_ca_system_score_codex":0.00021527235,"about_ca_system_score_gemma":0.0011042054,"threshold_uncertainty_score":0.9827586},"labels":[],"label_agreement":null},{"id":"W3034893586","doi":"10.33137/utjph.v1i1.33816","title":"Serotype Replacement After the Introduction of the 13-valent Pneumococcal Conjugate Vaccine in Ontario, Canada, 2007-2018","year":2020,"lang":"en","type":"article","venue":"University of Toronto Journal of Public Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Ontario; University of Toronto","funders":"","keywords":"Medicine; Serotype; Pneumococcal conjugate vaccine; Incidence (geometry); Pneumococcal polysaccharide vaccine; Pneumococcal disease; Case fatality rate; Vaccination; Population; Pediatrics; Conjugate vaccine; Herd immunity; Streptococcus pneumoniae; Environmental health; Immunology; Immunization; Biology","score_opus":0.02134626196537202,"score_gpt":0.2265330855724158,"score_spread":0.2051868236070438,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3034893586","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.84223646,0.00023994113,0.00006296015,0.15636118,0.00043509898,0.00023736252,0.000006432665,0.0000025717773,0.00041801194],"genre_scores_gemma":[0.9975381,0.0001289023,0.000024248524,0.0016947464,0.00019164417,1.2976416e-7,0.0000011579396,0.0000040668624,0.00041700856],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988239,0.00021195512,0.0003697871,0.00009866456,0.00032094977,0.00017473674],"domain_scores_gemma":[0.9988243,0.00002283075,0.00046567578,0.00018539534,0.00025768718,0.00024408379],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00067938044,0.00007690332,0.00028789177,0.00003176592,0.00009435865,0.000003825642,0.00016046403,0.000038494025,0.0011172303],"category_scores_gemma":[0.00007912948,0.0000504446,0.000096249154,0.000081802944,0.000052218296,0.00014822447,0.00005420908,0.00032197917,6.8599803e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013630284,0.00043097307,0.87402904,0.00020811764,0.000307592,0.00004426939,0.010488446,0.0001818996,0.0019476269,0.000090721376,0.109414525,0.001493727],"study_design_scores_gemma":[0.0009774055,0.0006520156,0.6655929,0.000039057708,0.000029782992,0.00004604464,0.0017075139,0.000017566379,0.000021898957,0.0000011541755,0.33088353,0.00003108065],"about_ca_topic_score_codex":0.8602407,"about_ca_topic_score_gemma":0.9865177,"teacher_disagreement_score":0.22146901,"about_ca_system_score_codex":0.0020246163,"about_ca_system_score_gemma":0.004453444,"threshold_uncertainty_score":0.99979585},"labels":[],"label_agreement":null},{"id":"W3035524611","doi":"10.17269/s41997-020-00329-y","title":"Hospitalizations for lower respiratory tract infections in children in relation to the sequential use of three pneumococcal vaccines in Quebec","year":2020,"lang":"en","type":"article","venue":"Canadian Journal of Public Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Institut national de psychiatrie légale Philippe-Pinel; Université Laval; Institut National de Santé Publique du Québec; Centre hospitalier universitaire de Québec","funders":"GlaxoSmithKline Biologicals","keywords":"Medicine; Pneumococcal conjugate vaccine; Bronchiolitis; Pneumonia; Pediatrics; Poisson regression; Respiratory tract infections; Lower respiratory tract infection; Incidence (geometry); Pneumococcal pneumonia; Streptococcus pneumoniae; Respiratory system; Internal medicine; Antibiotics; Population; Environmental health","score_opus":0.06986080958213749,"score_gpt":0.3089466983785459,"score_spread":0.2390858887964084,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3035524611","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9254405,0.000093518735,0.0016208215,0.07177675,0.00021249797,0.0007939687,0.00003629666,0.0000046886666,0.000020980968],"genre_scores_gemma":[0.99527967,0.000010834806,0.000032964905,0.004402297,0.00021764802,0.000021999564,0.000008684209,0.00001560325,0.000010319254],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99844694,0.00017985683,0.00078663765,0.00012661399,0.000121033576,0.00033891754],"domain_scores_gemma":[0.99849105,0.00010134155,0.00022797642,0.00013167704,0.00020747414,0.00084046257],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00086099055,0.000097545024,0.0002960036,0.0010317569,0.00009902214,0.000040019608,0.000096569165,0.0000953556,0.00002972319],"category_scores_gemma":[0.0017620951,0.00007943223,0.00009397681,0.0012614824,0.00003660022,0.00036501038,0.0000067581204,0.00040206668,0.0000017561684],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008381177,0.00013447338,0.993623,0.000017130433,0.000016348917,0.000010243003,0.0011613125,0.002282512,0.00014999563,0.00050299027,0.0006405091,0.0014530955],"study_design_scores_gemma":[0.0009777986,0.00079078984,0.97457516,0.00009033412,0.000009040998,0.00003712515,0.00013770218,0.00015764328,0.0000024217788,0.000028232824,0.023131406,0.00006233067],"about_ca_topic_score_codex":0.06108818,"about_ca_topic_score_gemma":0.8206773,"teacher_disagreement_score":0.7595891,"about_ca_system_score_codex":0.0007610681,"about_ca_system_score_gemma":0.008170847,"threshold_uncertainty_score":0.9974519},"labels":[],"label_agreement":null},{"id":"W3036756394","doi":"10.18433/jpps30942","title":"In Vitro ADME, Preclinical Pharmacokinetics and Prediction of Human Pharmacokinetics of RBx14255, a Novel Ketolide with Pharmacodynamics Against Multidrug-Resistant Bacterial Pathogens","year":2020,"lang":"en","type":"article","venue":"Journal of Pharmacy & Pharmaceutical Sciences","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Pharmacokinetics; Telithromycin; Pharmacology; Ketolide; Bioavailability; Pharmacodynamics; In vivo; Potency; Haemophilus influenzae; ADME; Chemistry; Streptococcus pneumoniae; In vitro; Medicine; Antibiotics; Biology; Biochemistry","score_opus":0.0893092015756993,"score_gpt":0.3992805358562409,"score_spread":0.3099713342805416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3036756394","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937287,0.0005044037,0.00032743977,0.0037553478,0.00052681786,0.00057453243,0.0002616836,0.00002521719,0.00029585877],"genre_scores_gemma":[0.99437547,0.0018081465,0.0012499501,0.0017811527,0.00072784425,0.000008080544,0.000007247923,0.000033041622,0.000009051816],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9959369,0.0002442737,0.0017757396,0.0004487202,0.0010754534,0.000518925],"domain_scores_gemma":[0.9971675,0.00034162615,0.0009833486,0.00012348738,0.0004912005,0.0008928336],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0011562611,0.0003769424,0.000969966,0.00042405244,0.00014559274,0.000036655743,0.0003784613,0.00009274004,0.00013594837],"category_scores_gemma":[0.00023047639,0.00028205413,0.00026997237,0.0011113399,0.0012399014,0.0004703125,0.00013737107,0.0009836731,0.0000011046817],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0041918056,0.0013556127,0.01805739,0.0004197658,0.00023563165,0.00017150928,0.00040549203,0.00065165607,0.9700161,0.000017696522,0.00014201849,0.004335297],"study_design_scores_gemma":[0.021281783,0.002079094,0.0042476095,0.00026298093,0.001268072,0.0003557103,0.00018986194,0.069151565,0.8700553,0.0000065369004,0.030794317,0.00030712903],"about_ca_topic_score_codex":0.000008332542,"about_ca_topic_score_gemma":0.0000015740002,"teacher_disagreement_score":0.09996079,"about_ca_system_score_codex":0.00008188243,"about_ca_system_score_gemma":0.0005052873,"threshold_uncertainty_score":0.99996316},"labels":[],"label_agreement":null},{"id":"W3037951770","doi":"","title":"Effectiveness of ceftriaxone plus doxycycline in the treatment of patients hospitalized with community-acquired pneumonia Presented, in part, at the 6th Annual Meeting of the Society of Hospital Medicine, San Diego, CA, April 1, 2003, and at the 26th Annual Meeting of the Society of General Internal Medicine, Vancouver, BC, Canada, May 3, 2003.","year":2006,"lang":"en","type":"article","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Ceftriaxone; Doxycycline; Community-acquired pneumonia; Pneumonia; Family medicine; Pediatrics; Antibiotics; Internal medicine","score_opus":0.007370484863146191,"score_gpt":0.23849275879712464,"score_spread":0.23112227393397844,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3037951770","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943459,0.00085011363,0.000010423415,0.000848171,0.0003888777,0.0022402757,0.00052453444,0.00000640587,0.0007852932],"genre_scores_gemma":[0.9987708,0.00026494166,0.000026949529,0.00015592983,0.00008520927,0.00007300106,0.00004418849,0.000030452054,0.0005485379],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99493164,0.0017264171,0.0014761487,0.00030264576,0.0011594688,0.00040368427],"domain_scores_gemma":[0.995336,0.0011638564,0.001484717,0.0009142545,0.0010339158,0.00006724956],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0019141914,0.0004286756,0.001253264,0.00006461481,0.00033155404,0.0000029648982,0.000528886,0.0001547017,0.000032859025],"category_scores_gemma":[0.00031637022,0.00016099513,0.00033474818,0.0012408604,0.0027716933,0.000075769174,0.0002992506,0.00036507376,3.6930874e-8],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008011197,0.0014628296,0.94750583,0.0006358175,0.00076462276,0.0000020388964,0.016225288,0.0014262627,0.010757286,0.000013800598,0.020268213,0.00013687384],"study_design_scores_gemma":[0.013014566,0.0030856614,0.94139415,0.0018858593,0.00071564614,0.000008823451,0.020569833,0.0006374347,0.016691491,0.000009577275,0.0017961193,0.00019082814],"about_ca_topic_score_codex":0.55511236,"about_ca_topic_score_gemma":0.4835785,"teacher_disagreement_score":0.07153385,"about_ca_system_score_codex":0.00041111786,"about_ca_system_score_gemma":0.0005312392,"threshold_uncertainty_score":0.9999422},"labels":[],"label_agreement":null},{"id":"W3039317455","doi":"10.1093/pch/pxaa066","title":"Combined influence of practice guidelines and prospective audit and feedback stewardship on antimicrobial treatment of community-acquired pneumonia and empyema in children: 2012 to 2016","year":2020,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; Centre hospitalier de l'Université Laval; Children's Hospital of Eastern Ontario","funders":"","keywords":"Medicine; Antimicrobial stewardship; Pneumonia; Guideline; Community-acquired pneumonia; Mycoplasma pneumoniae; Empyema; Antimicrobial; Cephalosporin; Antibiotics; Pediatrics; Internal medicine; Intensive care medicine; Surgery; Antibiotic resistance","score_opus":0.02712323327459315,"score_gpt":0.32281710663245183,"score_spread":0.2956938733578587,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3039317455","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9485179,0.0012903474,0.000006186482,0.048584823,0.00004022831,0.0013446208,0.00010692775,0.000024844145,0.00008411141],"genre_scores_gemma":[0.9846662,0.006079564,0.00030000508,0.008759529,0.00013564677,0.000017235809,0.000012714644,0.000020395033,0.00000868824],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998424,0.00025834414,0.00063368876,0.00025618612,0.00017924038,0.00024857523],"domain_scores_gemma":[0.99852353,0.00026485085,0.00034282828,0.00023626107,0.00026655308,0.0003659549],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000406962,0.00021684958,0.00063497317,0.00022367244,0.00019792747,0.000011916047,0.000058352285,0.00009703695,0.0000019406866],"category_scores_gemma":[0.0007687483,0.00017920852,0.000040253602,0.00048112433,0.00012425969,0.00012791918,0.00007826821,0.00023495386,0.0000032642988],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007633853,0.0013691518,0.98107004,0.0005295004,0.00012006541,0.0000053836056,0.0074522793,0.00010283004,0.003700769,0.00009143329,0.001122466,0.0036727085],"study_design_scores_gemma":[0.0039058183,0.0070015155,0.9870021,0.00020620794,0.00009904932,0.000059649996,0.0002958169,0.000010163624,0.00033879682,0.0000150179685,0.0009313459,0.00013452736],"about_ca_topic_score_codex":0.0007298174,"about_ca_topic_score_gemma":0.000053529737,"teacher_disagreement_score":0.039825294,"about_ca_system_score_codex":0.00009140457,"about_ca_system_score_gemma":0.00028102798,"threshold_uncertainty_score":0.73079115},"labels":[],"label_agreement":null},{"id":"W3040949579","doi":"10.1097/inf.0000000000002765","title":"A Phase II Trial of Safety, Tolerability and Immunogenicity of V114, a 15-Valent Pneumococcal Conjugate Vaccine, Compared With 13-Valent Pneumococcal Conjugate Vaccine in Healthy Infants","year":2020,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Pneumococcal conjugate vaccine; Immunogenicity; Medicine; Serotype; Adverse effect; Tolerability; Streptococcus pneumoniae; Regimen; Pneumococcal vaccine; Internal medicine; Pediatrics; Virology; Immunology; Antibody; Microbiology; Antibiotics; Biology","score_opus":0.016029912022527588,"score_gpt":0.28515554471975907,"score_spread":0.2691256326972315,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3040949579","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923587,0.0007906115,0.00008023476,0.003584479,0.00041366162,0.0024052868,0.00018247939,0.00006997525,0.000114593386],"genre_scores_gemma":[0.9963635,0.001982014,0.000009179163,0.0005652105,0.00095122436,0.000064923224,0.000012946424,0.00004545008,0.00000553812],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99536765,0.00070256623,0.0021161926,0.0005005229,0.000683773,0.00062928663],"domain_scores_gemma":[0.99629927,0.00037471697,0.0011927406,0.00051766116,0.00049548736,0.00112013],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0011490509,0.0004980958,0.0014655046,0.0003948583,0.0005473275,0.000037089227,0.00024131304,0.00015185296,0.0001259505],"category_scores_gemma":[0.00061627245,0.00033499688,0.00044336182,0.0010015377,0.00018099899,0.00020452181,0.00020485192,0.0012802952,0.0000057978377],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.20766653,0.009527376,0.7707512,0.0007630171,0.00043727848,0.0001740155,0.0012360065,0.0010701218,0.0077163437,0.000013937755,0.00010838654,0.0005358093],"study_design_scores_gemma":[0.23847094,0.030617826,0.7245835,0.00016786066,0.0022597075,0.001024363,0.00016498387,0.0015456604,0.00022540793,0.00015411648,0.0002846812,0.0005009484],"about_ca_topic_score_codex":0.00013708463,"about_ca_topic_score_gemma":0.00010207165,"teacher_disagreement_score":0.04616767,"about_ca_system_score_codex":0.00021296661,"about_ca_system_score_gemma":0.0013127101,"threshold_uncertainty_score":0.99991024},"labels":[],"label_agreement":null},{"id":"W3045064729","doi":"10.1371/journal.pone.0235598","title":"Clinical predictors of radiological pneumonia: A cross-sectional study from a tertiary hospital in Nepal","year":2020,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Tribhuvan University","keywords":"Medicine; Tachypnea; Pneumonia; Radiological weapon; Hypoxemia; Pediatrics; Cross-sectional study; Atypical pneumonia; Univariate analysis; Internal medicine; Intensive care medicine; Surgery; Multivariate analysis; Pathology","score_opus":0.08381081858828783,"score_gpt":0.3232095766897103,"score_spread":0.23939875810142247,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3045064729","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978774,0.00004381815,0.00000833306,0.00091823994,0.00016657707,0.00069166056,0.000052445095,0.00009255458,0.00014894587],"genre_scores_gemma":[0.99836695,0.000017699062,0.00008223501,0.0006079417,0.00081886566,0.000053397725,0.000019111427,0.000015268584,0.000018548251],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981206,0.0001558288,0.0007526147,0.00040251063,0.00037943275,0.00018902862],"domain_scores_gemma":[0.9991558,0.00021471978,0.00011136245,0.00019725265,0.000081079685,0.00023975958],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021099448,0.00014067531,0.00055012415,0.00006670987,0.0000450282,0.000010816007,0.00010928709,0.00020211191,0.00015010439],"category_scores_gemma":[0.00068025984,0.0001128092,0.00016265285,0.00021627691,0.0002326056,0.000065682485,0.00007932185,0.00059520156,0.000045720324],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019146896,0.011393899,0.9629184,0.000026616788,0.0005022046,0.00014457204,0.00047084072,0.0000047167487,0.02428998,0.0000016197566,0.000025413286,0.000030258554],"study_design_scores_gemma":[0.0027223646,0.004123736,0.9921399,0.000046348378,0.00016475165,0.0000037454795,0.000113788316,0.00026692392,0.00026997968,0.000013782429,0.000031240877,0.00010349047],"about_ca_topic_score_codex":0.000045301396,"about_ca_topic_score_gemma":0.00000988972,"teacher_disagreement_score":0.029221438,"about_ca_system_score_codex":0.000038618502,"about_ca_system_score_gemma":0.00009947408,"threshold_uncertainty_score":0.46002257},"labels":[],"label_agreement":null},{"id":"W3045402420","doi":"10.1007/978-3-319-69892-2_550-1","title":"Consequences of Pneumonia in Older Adults","year":2019,"lang":"en","type":"book-chapter","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Health Sciences North","funders":"","keywords":"Pneumonia; Medicine; Gerontology; Intensive care medicine; Internal medicine","score_opus":0.014909515418557536,"score_gpt":0.2578777341764017,"score_spread":0.24296821875784416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3045402420","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.024949213,0.00023037085,0.000002734301,0.0006825881,0.00027758366,0.00056605175,0.000019568773,0.00003811124,0.97323376],"genre_scores_gemma":[0.35987976,0.00021766075,0.000014235927,0.0005721255,0.00006051662,0.000005780993,0.0000133131225,0.000028408916,0.6392082],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","domain_scores_codex":[0.99906033,0.0000074698196,0.00037184506,0.00023968203,0.0001882908,0.00013239737],"domain_scores_gemma":[0.9993475,0.000052223037,0.00013782266,0.00029822145,0.000097560325,0.0000666509],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000061592,0.00019260365,0.00051264104,0.0002855127,0.000012925529,0.000003184378,0.000060215552,0.00034183104,0.0018212141],"category_scores_gemma":[0.000016566955,0.00014439254,0.0001517113,0.000031352552,0.00018260922,0.000025112591,0.000023544813,0.000327505,0.0003651033],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00063602114,0.0011600646,0.15491882,0.007444728,0.0013084934,0.0017354367,0.0016659611,0.000020635982,0.27352569,0.5197571,0.00924893,0.028578155],"study_design_scores_gemma":[0.009939763,0.0027454463,0.14367408,0.020178005,0.00075527554,0.0011788461,0.00033183923,0.000030355955,0.012147846,0.0052315276,0.8018774,0.0019096244],"about_ca_topic_score_codex":0.000061000308,"about_ca_topic_score_gemma":0.00010209326,"teacher_disagreement_score":0.79262847,"about_ca_system_score_codex":0.000043938086,"about_ca_system_score_gemma":0.0003458668,"threshold_uncertainty_score":0.99909127},"labels":[],"label_agreement":null},{"id":"W3045661116","doi":"10.1016/j.ijid.2020.07.038","title":"The protective effect of pneumococcal vaccination on cardiovascular disease in adults: A systematic review and meta-analysis","year":2020,"lang":"en","type":"review","venue":"International Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Medicine; Myocardial infarction; Meta-analysis; Vaccination; Internal medicine; Adverse effect; Relative risk; Placebo; Immunology; Confidence interval; Pathology","score_opus":0.01923407873728709,"score_gpt":0.32948482031073245,"score_spread":0.31025074157344534,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3045661116","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00008394238,0.99599427,0.000037717215,0.00034584236,0.00013766903,0.0032091266,0.00014559503,0.000014537533,0.000031305386],"genre_scores_gemma":[0.01835966,0.9806688,4.565697e-7,0.0001164024,0.000113894355,0.00068831607,0.00001667164,0.00002727505,0.000008553199],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9958062,0.001338533,0.0015253203,0.0002829341,0.00091614947,0.0001308303],"domain_scores_gemma":[0.9960783,0.0010662747,0.0015425873,0.0003592042,0.0007099307,0.00024371735],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00082512415,0.0003970317,0.0055751535,0.0008207465,0.000066436056,0.000048800983,0.00026579588,0.00009287516,0.000025161062],"category_scores_gemma":[0.0035836624,0.00019501706,0.0072366553,0.0007642994,0.000057824178,0.000103562554,0.000057508736,0.0005111565,0.0000052792375],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000142127,0.00028523427,0.00040231762,0.49747324,0.49069002,0.00044964318,0.000020418845,0.000090768386,1.5465923e-7,0.000031233176,0.000011782463,0.010403074],"study_design_scores_gemma":[0.00065985275,0.00069937913,0.00057994557,0.061315145,0.93008345,0.0002651831,0.000004194403,0.000013071084,4.79176e-7,0.000022370332,0.0061975517,0.00015939525],"about_ca_topic_score_codex":0.000011580077,"about_ca_topic_score_gemma":0.00000499504,"teacher_disagreement_score":0.43939343,"about_ca_system_score_codex":0.00033959243,"about_ca_system_score_gemma":0.0003373031,"threshold_uncertainty_score":0.7952565},"labels":[],"label_agreement":null},{"id":"W3046094389","doi":"10.1128/msphere.00478-20","title":"The Challenges of Using Oropharyngeal Samples To Measure Pneumococcal Carriage in Adults","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Health and Medical Research Council; National Institutes of Health; Department of Foreign Affairs and Trade, Australian Government; State Government of Victoria; Pfizer; Australian Government; Sanofi Pasteur; Murdoch Children's Research Institute; Veski; University of Melbourne; Institute of Infection and Immunity; GlaxoSmithKline; Bill and Melinda Gates Foundation; Emory University; National Institute of Allergy and Infectious Diseases; Children’s Hospital of Wisconsin Research Institute; Sanofi","keywords":"Streptococcus pneumoniae; Serotype; Multiplex polymerase chain reaction; Microbiology; Latex fixation test; Multiplex; Biology; Polymerase chain reaction; Antibody; Immunology; Gene; Bioinformatics; Genetics; Antibiotics","score_opus":0.06678862037445353,"score_gpt":0.29000704605387845,"score_spread":0.2232184256794249,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3046094389","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9866809,0.0013310148,0.0000234015,0.009603617,0.000106403844,0.00031131675,0.000008621892,0.0000307356,0.0019039599],"genre_scores_gemma":[0.99921036,0.00009105704,0.00005302395,0.00041138136,0.00019515862,0.000012255998,6.2671774e-7,0.000014516792,0.000011616925],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99925405,0.000058995225,0.00019575955,0.00016357328,0.00015853035,0.00016907978],"domain_scores_gemma":[0.99953246,0.000059523467,0.000037630463,0.00016101461,0.00006295537,0.00014643838],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009259079,0.00009422736,0.00021507993,0.00001918638,0.00007192324,0.000006129762,0.00007919723,0.000064033426,0.000038414895],"category_scores_gemma":[0.00018009386,0.00006262093,0.00006442488,0.00018870822,0.000041241798,0.000027918779,0.000035881934,0.00016558943,0.00001586323],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00083747925,0.0002690647,0.13798437,0.00077635364,0.00014680596,0.00019670713,0.009310392,0.0006066556,0.7871749,0.0012701101,0.0004408937,0.060986273],"study_design_scores_gemma":[0.0051697227,0.0021172964,0.8851903,0.0017458576,0.00017348983,0.00010595077,0.0131856045,0.0013233904,0.014187993,0.00014555716,0.07608202,0.0005728336],"about_ca_topic_score_codex":0.00007965716,"about_ca_topic_score_gemma":0.00064722094,"teacher_disagreement_score":0.7729869,"about_ca_system_score_codex":0.00003289682,"about_ca_system_score_gemma":0.00008952537,"threshold_uncertainty_score":0.25536075},"labels":[],"label_agreement":null},{"id":"W3046192401","doi":"10.1136/bmjgh-2020-002708","title":"An analysis of clinical predictive values for radiographic pneumonia in children","year":2020,"lang":"en","type":"article","venue":"BMJ Global Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Global Health Research","funders":"World Health Organization; Bill and Melinda Gates Foundation","keywords":"Pneumonia; Medicine; Radiography; Intensive care medicine; Pediatrics; Internal medicine; Radiology","score_opus":0.0505761321726667,"score_gpt":0.477571749851535,"score_spread":0.4269956176788683,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3046192401","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99143153,0.00015560376,0.0013694662,0.004977356,0.0000955004,0.0013049796,0.0004539769,0.0000636996,0.00014790945],"genre_scores_gemma":[0.9949208,0.00012585845,0.00024408674,0.0043121707,0.00025310667,0.000039080933,0.0000956497,0.000007677258,0.0000015823607],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99814916,0.00022022957,0.00084218604,0.00033715012,0.0002001714,0.000251078],"domain_scores_gemma":[0.99886847,0.000065191045,0.00024779091,0.0002463221,0.00009089913,0.00048131004],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006703788,0.00011350774,0.00081830804,0.00018588624,0.000060169743,0.000004779396,0.000089816574,0.00011462612,0.0000073167207],"category_scores_gemma":[0.00019850416,0.00009677124,0.00041081785,0.0017261123,0.00009592078,0.00005008246,0.000014455686,0.00015356172,0.0000018338615],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023957223,0.00039239213,0.9936436,0.000047396745,0.0006457035,0.0000023908856,0.00010780803,0.00054277905,0.00003160901,0.00018528746,0.0002725052,0.0038890005],"study_design_scores_gemma":[0.0013389093,0.0032048048,0.97665954,0.00003196832,0.00057125994,0.000009305646,0.00008045897,0.017719945,0.0000031101306,0.00006820106,0.0002435044,0.00006899694],"about_ca_topic_score_codex":0.00034055783,"about_ca_topic_score_gemma":0.00017166557,"teacher_disagreement_score":0.017177166,"about_ca_system_score_codex":0.000078305646,"about_ca_system_score_gemma":0.00056496443,"threshold_uncertainty_score":0.39462164},"labels":[],"label_agreement":null},{"id":"W3046497506","doi":"10.1080/22423982.2020.1799688","title":"Burden of respiratory infections and otitis media in the Inuit population of Nunavik, Quebec, Canada","year":2020,"lang":"en","type":"article","venue":"International Journal of Circumpolar Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Nunavik Regional Board of Health and Social Services; Université Laval; Institut National de Santé Publique du Québec; Centre hospitalier universitaire de Québec","funders":"GlaxoSmithKline Biologicals; GlaxoSmithKline","keywords":"Medicine; Respiratory tract infections; Otitis; Population; Lower respiratory tract infection; Pediatrics; Demography; Environmental health; Respiratory system; Internal medicine; Surgery","score_opus":0.0222861579811612,"score_gpt":0.3016290274845582,"score_spread":0.27934286950339704,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3046497506","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97762156,0.0006319428,0.000055219738,0.021113638,0.00036669034,0.00011216538,0.000036679437,0.0000025393783,0.000059583675],"genre_scores_gemma":[0.9956617,0.00017396822,0.000010653851,0.0037734446,0.0003662837,0.0000011033401,0.0000045714005,0.0000059689423,0.0000023575092],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984858,0.0001427448,0.000680754,0.00007008989,0.0005338363,0.00008674853],"domain_scores_gemma":[0.9988076,0.00015747974,0.00051604334,0.000071094146,0.00031636909,0.00013141321],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038156984,0.0000674791,0.00025405159,0.00020022021,0.00003125736,0.000007761266,0.00011986579,0.000043107546,0.00003219838],"category_scores_gemma":[0.00051079184,0.000051618896,0.00006171479,0.00018875854,0.000046329133,0.000105338644,0.000014837266,0.0003058631,3.279162e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008472692,0.00019990985,0.9624298,0.00021536909,0.00017075248,0.000117039024,0.013737937,0.0004499654,0.009028952,0.0012151852,0.001822256,0.01052811],"study_design_scores_gemma":[0.00087538274,0.00028936044,0.9874426,0.0002383353,0.000024394298,0.00018202513,0.000762148,0.000047958452,0.00012495084,0.00010478458,0.00986222,0.000045799494],"about_ca_topic_score_codex":0.39517325,"about_ca_topic_score_gemma":0.6471559,"teacher_disagreement_score":0.2519826,"about_ca_system_score_codex":0.00029403513,"about_ca_system_score_gemma":0.0023235276,"threshold_uncertainty_score":0.60885435},"labels":[],"label_agreement":null},{"id":"W304676295","doi":"10.1155/2009/286823","title":"Antimicrobial‐Resistant <i>Streptococcus pneumoniae</i> in Canadian Hospitals: Results from the 2007 CANWARD Study","year":2009,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Sciences Centre; University of Manitoba","funders":"Astellas Pharma; Health Canada; Bayer; University of Manitoba; Manitoba Health Research Council; Pfizer Canada; Merck","keywords":"Streptococcus pneumoniae; Microbiology; Ertapenem; Moxifloxacin; Levofloxacin; Penicillin; Medicine; Broth microdilution; Trimethoprim; Clarithromycin; Antimicrobial; Amoxicillin; Antibiotic resistance; Meropenem; Minimum inhibitory concentration; Antibiotics; Biology","score_opus":0.0054782014186395755,"score_gpt":0.23853698359978376,"score_spread":0.23305878218114418,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W304676295","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9782287,0.0016046381,0.0000016042496,0.017817382,0.00084085355,0.00045089665,0.0005631666,0.000011205898,0.00048154927],"genre_scores_gemma":[0.986171,0.00023515154,0.0000012893659,0.013066625,0.00045094712,0.000004499073,0.000032724078,0.000013054743,0.000024720302],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99804056,0.0002124206,0.00070938404,0.00027624238,0.00010383869,0.0006575544],"domain_scores_gemma":[0.99647397,0.00019802891,0.00019437741,0.0002461866,0.00022640754,0.002661004],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045884302,0.00022324262,0.0005237631,0.00039194163,0.00028988268,0.00004629646,0.00019382776,0.00023857155,0.00016084714],"category_scores_gemma":[0.0014908001,0.00015021794,0.00015352634,0.0002924813,0.0003317962,0.00005727193,0.000012818114,0.00066977093,0.000010298308],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000080207596,0.00025179915,0.96893114,0.000007586362,0.0001573283,0.004405483,0.0005198118,0.0000073985593,0.003480967,0.000019469115,0.017989112,0.0041497047],"study_design_scores_gemma":[0.0037266195,0.0015487303,0.9067975,0.00026068272,0.00021364065,0.0013304448,0.00044922536,0.000002719242,0.000019254427,0.000055564273,0.08540155,0.00019406529],"about_ca_topic_score_codex":0.49347678,"about_ca_topic_score_gemma":0.9145242,"teacher_disagreement_score":0.42104745,"about_ca_system_score_codex":0.00046205526,"about_ca_system_score_gemma":0.006625544,"threshold_uncertainty_score":0.999006},"labels":[],"label_agreement":null},{"id":"W3047603484","doi":"10.1111/acem.14102","title":"Hot Off the Press: Accuracy of Signs and Symptoms for the Diagnosis of Community‐acquired Pneumonia","year":2020,"lang":"en","type":"article","venue":"Academic Emergency Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; University of Calgary; University of Toronto","funders":"","keywords":"Medicine; Emergency department; Community-acquired pneumonia; Confidence interval; Pneumonia; Likelihood ratios in diagnostic testing; Medical prescription; Physical examination; Lower respiratory tract infection; Intensive care medicine; Emergency medicine; Internal medicine; Pediatrics; Respiratory tract infections; Respiratory system","score_opus":0.11982694260279222,"score_gpt":0.3724098361210264,"score_spread":0.25258289351823415,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3047603484","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9249793,0.018416168,0.00019377605,0.05404495,0.0004929818,0.0013535742,0.000045000885,0.0000433276,0.0004308911],"genre_scores_gemma":[0.97172195,0.025081849,0.0000034219865,0.0023381235,0.00050870737,0.0002219652,0.000009844234,0.00002419847,0.00008995371],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99823314,0.00018866848,0.0008940422,0.00015039656,0.00031149187,0.00022228628],"domain_scores_gemma":[0.99667877,0.0020807057,0.0004470791,0.00044218096,0.0001952755,0.0001559601],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00070456346,0.00018978292,0.00047811415,0.000050674225,0.0002710003,4.5743923e-7,0.00039187295,0.00016254539,0.00017873097],"category_scores_gemma":[0.003467567,0.00009449802,0.00012821595,0.00036326735,0.0006089249,0.00006862256,0.00011739914,0.00062698516,0.0000015325364],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030545064,0.00020087909,0.24315526,0.0013013717,0.0008912859,0.0000013401645,0.025048222,0.000045231962,0.6678073,0.0010064077,0.048007876,0.012229429],"study_design_scores_gemma":[0.0056295823,0.009198748,0.41482916,0.001160428,0.0044314372,0.00005399723,0.011500327,0.0016307331,0.028021157,0.0006900103,0.52236474,0.0004896925],"about_ca_topic_score_codex":0.0001835268,"about_ca_topic_score_gemma":0.00000903112,"teacher_disagreement_score":0.6397861,"about_ca_system_score_codex":0.00001105416,"about_ca_system_score_gemma":0.00005429056,"threshold_uncertainty_score":0.41512522},"labels":[],"label_agreement":null},{"id":"W3080249538","doi":"10.1002/jmv.26467","title":"Association of mortality and recent <i>Mycoplasma pneumoniae</i> infection in COVID‐19 patients","year":2020,"lang":"en","type":"article","venue":"Journal of Medical Virology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Mycoplasma pneumoniae; Odds ratio; Medicine; Coinfection; Confidence interval; Immunoglobulin M; Internal medicine; Immunology; Antibody; Pneumonia; Virology; Immunoglobulin G; Virus","score_opus":0.03543388191394486,"score_gpt":0.3327501989769672,"score_spread":0.29731631706302236,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3080249538","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9397159,0.00006769066,0.0001096,0.059573367,0.00032598304,0.000087451335,0.0000026697182,0.000006406149,0.000110934234],"genre_scores_gemma":[0.9879101,0.0029689085,0.000007810392,0.008919716,0.0001792768,0.0000016312866,0.0000021851788,0.000005209592,0.000005163938],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983439,0.00022573657,0.0006119836,0.00009620868,0.00059454667,0.00012764201],"domain_scores_gemma":[0.99865824,0.00019759596,0.0004599292,0.000050790015,0.00013898399,0.0004944337],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009033134,0.00007198233,0.00037776574,0.00011196664,0.000025742713,0.0000035279556,0.000046835223,0.0002826458,0.00017823081],"category_scores_gemma":[0.0054661245,0.000055882992,0.000067185974,0.0001925655,0.00007195412,0.00006631511,0.000030849336,0.0005706432,0.0000033138722],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000112283145,0.00029584605,0.99289733,0.00006552061,0.00008404711,0.000062927815,0.00017679908,0.000013489828,0.0025012349,0.000011161034,0.0015023836,0.0022769482],"study_design_scores_gemma":[0.004464761,0.0018148911,0.94505024,0.000050538103,0.00013263029,0.00027085657,0.000021110343,0.00014903303,0.00009036235,0.000092684946,0.047812004,0.000050879415],"about_ca_topic_score_codex":0.00003068155,"about_ca_topic_score_gemma":0.00008317838,"teacher_disagreement_score":0.05065365,"about_ca_system_score_codex":0.00014561512,"about_ca_system_score_gemma":0.00032307015,"threshold_uncertainty_score":0.6543857},"labels":[],"label_agreement":null},{"id":"W3084238387","doi":"10.2174/1573396316666200907115800","title":"Comparative Efficacy of Beta-Lactams and Macrolides in the Treatment of Pediatric Pneumonia: A Systematic Review","year":2020,"lang":"en","type":"review","venue":"Current Pediatric Reviews","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Medicine; Community-acquired pneumonia; Pneumonia; Amoxicillin; Streptococcus pneumoniae; Intensive care medicine; Population; Haemophilus influenzae; Pediatrics; Randomized controlled trial; Internal medicine; Antibiotics","score_opus":0.16223461454812227,"score_gpt":0.4281089937924044,"score_spread":0.26587437924428214,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3084238387","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00010931716,0.9843405,0.000002348014,0.00007911483,0.00025207855,0.01505045,0.00007632773,0.000016996626,0.00007286708],"genre_scores_gemma":[0.00005182602,0.997452,0.000009083226,0.000046053523,0.00067345885,0.00165361,0.00006878739,0.00003319184,0.000011942508],"study_design_codex":"systematic_review","study_design_gemma":"not_applicable","domain_scores_codex":[0.99303764,0.0017809313,0.0038624536,0.00057110906,0.00044201067,0.00030585148],"domain_scores_gemma":[0.99464184,0.0011356439,0.0030372005,0.0008908055,0.00010737575,0.00018710579],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009658647,0.00080152735,0.0113781495,0.00047187918,0.00005853316,0.000015986674,0.000340744,0.00017455149,0.00001569465],"category_scores_gemma":[0.0004502193,0.0003870406,0.001893941,0.0022787363,0.00008897243,0.00005254446,0.00005029393,0.0005240259,0.000079380145],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000025220932,0.00086032803,0.00038769314,0.92280525,0.00014200858,0.000014280371,0.0003344527,3.2118294e-8,1.3955524e-7,0.000008978574,0.0005205276,0.074923776],"study_design_scores_gemma":[0.00049092754,0.00063133484,0.00015438793,0.20915155,0.04518263,0.00011322971,0.0000108345,6.614429e-7,8.62528e-8,0.0000011630045,0.74400496,0.00025820834],"about_ca_topic_score_codex":0.0000028239003,"about_ca_topic_score_gemma":0.0000014469775,"teacher_disagreement_score":0.74348444,"about_ca_system_score_codex":0.00014149283,"about_ca_system_score_gemma":0.00044689435,"threshold_uncertainty_score":0.99985814},"labels":[],"label_agreement":null},{"id":"W3085347761","doi":"10.1177/0897190020953032","title":"Antibiotics Utilization for Community Acquired Pneumonia in a Community Hospital Emergency Department","year":2020,"lang":"en","type":"article","venue":"Journal of Pharmacy Practice","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Peace Arch Hospital; University of British Columbia Hospital","funders":"","keywords":"Medicine; Community-acquired pneumonia; Ceftriaxone; Emergency department; Antimicrobial stewardship; Moxifloxacin; Antibiotics; Pneumonia; Emergency medicine; Intensive care medicine; Antibiotic resistance; Internal medicine","score_opus":0.13298105613629177,"score_gpt":0.4243548687991805,"score_spread":0.29137381266288875,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3085347761","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9754739,0.00020988409,0.0015528701,0.021136021,0.000575221,0.00047565,0.000016619511,0.000021886483,0.00053798145],"genre_scores_gemma":[0.9957267,0.00073280354,0.0005041918,0.0027277798,0.0002616109,0.0000019634156,0.000011194529,0.000020376601,0.000013366342],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99793875,0.00090260344,0.0006698899,0.00006640376,0.00024526857,0.00017706442],"domain_scores_gemma":[0.99786824,0.00048978726,0.000660873,0.00017014843,0.0005714474,0.00023947775],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001019197,0.00013338971,0.00030239316,0.000110133,0.00031142082,0.000020747259,0.00017176452,0.000047893453,0.000045932473],"category_scores_gemma":[0.0031011412,0.000117869524,0.0001571334,0.0003504988,0.000037931994,0.0006472886,0.00005728746,0.0009963957,0.000007874357],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004712429,0.019800875,0.24059157,0.0014853826,0.0010067516,0.00040128714,0.018296245,0.00046495927,0.69522816,0.000112372356,0.010589904,0.007310048],"study_design_scores_gemma":[0.022925328,0.012100178,0.14253001,0.00028879227,0.0025092426,0.0013609085,0.012758138,0.0060253413,0.04295139,0.0001611489,0.75580806,0.0005814422],"about_ca_topic_score_codex":0.000042778458,"about_ca_topic_score_gemma":0.000011023423,"teacher_disagreement_score":0.74521816,"about_ca_system_score_codex":0.000110617286,"about_ca_system_score_gemma":0.00020726974,"threshold_uncertainty_score":0.48065796},"labels":[],"label_agreement":null},{"id":"W3090822763","doi":"10.1371/journal.pone.0239848","title":"Incidence of invasive pneumococcal disease after introduction of the 13-valent conjugate pneumococcal vaccine in British Columbia: A retrospective cohort study","year":2020,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Children's Hospital; BC Centre for Disease Control; University of British Columbia","funders":"Pfizer Canada; Ministry of Health, British Columbia; Pfizer","keywords":"Pneumococcal conjugate vaccine; Medicine; Incidence (geometry); Pneumococcal disease; Poisson regression; Pediatrics; Cohort; Serotype; Pneumococcal infections; Rate ratio; Retrospective cohort study; Streptococcus pneumoniae; Internal medicine; Immunology; Confidence interval; Population; Environmental health; Antibiotics; Biology","score_opus":0.014691802208260099,"score_gpt":0.21992520924777428,"score_spread":0.20523340703951418,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3090822763","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994021,0.0000657026,0.000001511831,0.0029257801,0.00008236748,0.0027591228,0.000066963825,0.00003652231,0.00004105328],"genre_scores_gemma":[0.9988736,0.000069005735,0.000006572125,0.0002830652,0.0003109644,0.00034007832,0.000007362809,0.000024337272,0.00008502699],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9979059,0.00019376997,0.0006075183,0.0004666274,0.0006122723,0.00021388332],"domain_scores_gemma":[0.99866784,0.000054538683,0.00022893661,0.00041720702,0.00041301845,0.00021847022],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022877342,0.00013672783,0.0006992001,0.000059653732,0.00007011121,0.000023228904,0.00013874573,0.000073275376,0.00020488878],"category_scores_gemma":[0.0013246684,0.00015149204,0.00013263663,0.00064448256,0.00015022737,0.00011698176,0.00015791852,0.0004524658,0.000009251431],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002070545,0.004912542,0.8318473,0.00027475305,0.00026659272,0.000098984376,0.00037861982,0.000009285629,0.16192995,0.0000010059872,0.000059879254,0.000014037913],"study_design_scores_gemma":[0.0016537859,0.0013346055,0.99127525,0.0004104955,0.0006983454,0.000012681436,0.00022825538,0.000052876923,0.0041660275,0.00003048737,0.0000090637395,0.00012814824],"about_ca_topic_score_codex":0.001274148,"about_ca_topic_score_gemma":0.016682155,"teacher_disagreement_score":0.15942794,"about_ca_system_score_codex":0.00016373403,"about_ca_system_score_gemma":0.00022701782,"threshold_uncertainty_score":0.93090343},"labels":[],"label_agreement":null},{"id":"W3092687430","doi":"10.1099/mgen.0.000454","title":"Azithromycin resistance mutations in Streptococcus pneumoniae as revealed by a chemogenomic screen","year":2020,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research","keywords":"23S ribosomal RNA; Streptococcus pneumoniae; Mutagenesis; Azithromycin; Biology; Glutamine; Mutant; Gene; Ribosomal RNA; Mutation; Genetics; Microbiology; Phenotype; Ribosomal protein; Bacterial genetics; Antibiotics; RNA; Escherichia coli; Ribosome; Amino acid","score_opus":0.013492953180228888,"score_gpt":0.24808786470800448,"score_spread":0.2345949115277756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3092687430","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9864595,0.00027063818,0.00007609127,0.008545639,0.0000870519,0.0008845822,0.00024165526,0.000099705954,0.0033351663],"genre_scores_gemma":[0.99240553,0.000091542555,0.00028979025,0.005340857,0.0002459071,0.000043264496,0.00014163584,0.00006151422,0.0013799685],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985546,0.000054648513,0.00047411068,0.0004544918,0.00009948799,0.00036269007],"domain_scores_gemma":[0.99922746,0.000039342332,0.00012087603,0.00028451384,0.000059262562,0.0002685621],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000098866716,0.00022966349,0.0004006722,0.00010520861,0.00013686974,0.000035847614,0.00015350223,0.00015891873,0.00014451407],"category_scores_gemma":[0.000096908996,0.00024590545,0.00013690496,0.00040959095,0.000110981106,0.00006565056,0.000060443996,0.00037664943,0.00046417213],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007383176,0.000111750065,0.0074157305,0.000047798236,0.000045562563,0.00006855153,0.00094523444,0.00004974848,0.98299164,0.000032913496,0.007885218,0.00033200326],"study_design_scores_gemma":[0.008485006,0.00069130276,0.045422267,0.00022944558,0.00030275562,0.00014350803,0.0007512934,0.00015674611,0.16028011,0.00019037824,0.78221434,0.0011328236],"about_ca_topic_score_codex":0.000058960733,"about_ca_topic_score_gemma":0.00023754673,"teacher_disagreement_score":0.8227115,"about_ca_system_score_codex":0.00028722832,"about_ca_system_score_gemma":0.00037364656,"threshold_uncertainty_score":0.99999934},"labels":[],"label_agreement":null},{"id":"W3093049072","doi":"10.1093/cid/ciaa1567","title":"Consensus (Convergence of Opinion on Recommendations and Evidence [CORE]) Versus Systematic (Grading of Recommendations Assessment, Development, and Evaluation [GRADE]) Approach to Development of Guidelines for Community-acquired Pneumonia","year":2020,"lang":"en","type":"letter","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Grading (engineering); MEDLINE; Systematic review; Evidence-based medicine; Family medicine; Library science; Alternative medicine; Pathology; Law; Political science","score_opus":0.5380801654035743,"score_gpt":0.5211490742821859,"score_spread":0.016931091121388353,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3093049072","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6924162,0.0024547642,0.010975074,0.26753256,0.0061140303,0.018639935,0.0010373467,0.0003539613,0.00047611754],"genre_scores_gemma":[0.9304609,0.001609189,0.015915811,0.046292312,0.00083202607,0.0026455158,0.002053548,0.00014450979,0.000046231962],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9949397,0.0010673054,0.002775369,0.0005165101,0.00046570852,0.00023542716],"domain_scores_gemma":[0.98922926,0.0069897156,0.0016069142,0.00051613746,0.0014019196,0.00025606435],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0017719101,0.0003847154,0.001437129,0.00042171363,0.0004315521,0.000024510322,0.00017508319,0.00032580126,0.000010439622],"category_scores_gemma":[0.009763677,0.0003489647,0.00024247222,0.00038292358,0.0003067471,0.00007896332,0.0001539678,0.00058554974,0.0000017856207],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011973481,0.009837037,0.19563206,0.2857457,0.01087652,0.000011189149,0.005194341,0.00029801027,0.00589055,0.00055722287,0.43443158,0.05032843],"study_design_scores_gemma":[0.03737922,0.025272446,0.4112402,0.29281843,0.022169936,0.0001144867,0.008227952,0.02435188,0.003496518,0.0017837051,0.16722082,0.0059244055],"about_ca_topic_score_codex":0.000015221913,"about_ca_topic_score_gemma":0.00001296413,"teacher_disagreement_score":0.26721078,"about_ca_system_score_codex":0.00018754079,"about_ca_system_score_gemma":0.0012545915,"threshold_uncertainty_score":0.9998962},"labels":[],"label_agreement":null},{"id":"W3093268979","doi":"10.1097/inf.0000000000002934","title":"Antibiotic Prescriptions for Children With Community-acquired Pneumonia: Findings From Italy","year":2020,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's & Women's Health Centre of British Columbia","funders":"","keywords":"Medicine; Community-acquired pneumonia; Odds ratio; Amoxicillin; Medical prescription; Confidence interval; Internal medicine; Clavulanic acid; Antibiotics; Pneumonia; Retrospective cohort study; Pediatrics; Pharmacology; Microbiology","score_opus":0.019294760715282914,"score_gpt":0.2490945219150947,"score_spread":0.2297997611998118,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3093268979","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9920343,0.0002539683,0.0013760453,0.004674455,0.00028202796,0.0008107662,0.00019695125,0.00017966337,0.0001917926],"genre_scores_gemma":[0.9945056,0.00019805238,0.000040917294,0.002716745,0.0023653435,0.000026866235,0.000046272795,0.00005104541,0.000049143986],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985963,0.00021328201,0.00034115923,0.00019074956,0.00029684734,0.0003616254],"domain_scores_gemma":[0.9983341,0.00023141653,0.00018331099,0.00032852413,0.00020373237,0.0007188966],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00021876262,0.00024702353,0.0003135853,0.00014922349,0.0018314209,0.00015076454,0.0002103818,0.00007927431,0.000067866094],"category_scores_gemma":[0.0003354587,0.00015543043,0.00030013462,0.00048138123,0.00012261089,0.00019058256,0.000060215047,0.00078851776,0.00005696385],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023740277,0.00045719795,0.99356294,0.000057601017,0.00038082947,0.000026248901,0.0006596048,0.00025530098,0.0019054195,0.000019735051,0.002306975,0.00013075076],"study_design_scores_gemma":[0.0028884397,0.001155687,0.99064714,0.00003479551,0.0031355666,0.00070898666,0.00015503333,0.0002063149,0.00003429646,0.00029526526,0.0005049377,0.00023355127],"about_ca_topic_score_codex":0.000049313083,"about_ca_topic_score_gemma":0.000011605543,"teacher_disagreement_score":0.0029158082,"about_ca_system_score_codex":0.000090033995,"about_ca_system_score_gemma":0.00039130962,"threshold_uncertainty_score":0.9994681},"labels":[],"label_agreement":null},{"id":"W3093589187","doi":"10.7759/cureus.11093","title":"Acute Hypoxic Respiratory Failure and Septic Shock Secondary to Mycoplasma Pneumoniae Pneumonia Complicated by Heroin Overdose","year":2020,"lang":"en","type":"article","venue":"Cureus","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Brandon Regional Health Authority","funders":"HCA Healthcare","keywords":"Medicine; Fulminant; Septic shock; Emergency department; Mycoplasma pneumonia; Mycoplasma pneumoniae; Pneumonia; Heroin; Respiratory failure; Intensive care medicine; Shock (circulatory); Emergency medicine; Anesthesia; Sepsis; Internal medicine; Drug","score_opus":0.017543639146485608,"score_gpt":0.26340823411743264,"score_spread":0.24586459497094704,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3093589187","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9758209,0.0007100131,0.0001124231,0.01940708,0.00018043147,0.0008155054,0.00023448284,0.00041358598,0.0023055705],"genre_scores_gemma":[0.96981066,0.000060492275,0.00011612515,0.028950775,0.00024399968,0.00008074322,0.00004741777,0.00009368826,0.0005960793],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99791276,0.000085995714,0.00045166662,0.000730659,0.00030278857,0.00051613763],"domain_scores_gemma":[0.99810225,0.00007188533,0.00010716713,0.0005144017,0.00011207599,0.0010921977],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00009532356,0.0004059996,0.0005840926,0.00010171022,0.0002617959,0.00007346025,0.00019976,0.00025811716,0.00029500943],"category_scores_gemma":[0.000099756224,0.0003739239,0.00014048586,0.00052466436,0.00013475005,0.00018273496,0.00018378731,0.00061400124,0.000595362],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006572945,0.00013376825,0.010986564,0.000099148216,0.00023185297,0.00021584642,0.0004010302,0.0000088107245,0.92276424,0.000036403766,0.06433955,0.0007170724],"study_design_scores_gemma":[0.0032174196,0.0028170869,0.024535172,0.00014225782,0.0004951599,0.0012540517,0.0003220175,0.00030222192,0.019660935,0.00004550423,0.94634044,0.0008677131],"about_ca_topic_score_codex":0.000011448097,"about_ca_topic_score_gemma":0.000037308528,"teacher_disagreement_score":0.9031033,"about_ca_system_score_codex":0.00013087888,"about_ca_system_score_gemma":0.00020218625,"threshold_uncertainty_score":0.99987125},"labels":[],"label_agreement":null},{"id":"W3094484032","doi":"10.1016/s1473-3099(20)30253-x","title":"Pulmonary embolism associated with mycoplasma in a child","year":2020,"lang":"en","type":"article","venue":"The Lancet Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen Elizabeth II Health Sciences Centre","funders":"","keywords":"Medicine; Crackles; Atypical pneumonia; Azithromycin; Pneumonia; Community-acquired pneumonia; Clavulanic acid; Mycoplasma pneumonia; Cefaclor; Amoxicillin; Internal medicine; Mycoplasma pneumoniae; Pediatrics; Anesthesia; Physical examination; Antibiotics; Cephalosporin","score_opus":0.018306245237397552,"score_gpt":0.24723228372875763,"score_spread":0.2289260384913601,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3094484032","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9575657,0.00021323074,0.0000121903195,0.012859307,0.00008256278,0.0003891838,0.000048753158,0.00045055794,0.028378462],"genre_scores_gemma":[0.98855716,0.00008743891,6.08608e-7,0.010641624,0.00053426693,0.000073192714,0.000024946436,0.00002415203,0.000056590787],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999115,0.000092415954,0.00014671413,0.00019797811,0.00017018884,0.00027770433],"domain_scores_gemma":[0.99939936,0.00009765773,0.00006412444,0.00021899818,0.000041745843,0.00017810799],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000059513302,0.00014989745,0.00035185975,0.00005860523,0.00016898167,0.000023955092,0.00008308885,0.000055744826,0.00007717014],"category_scores_gemma":[0.0002716575,0.00008996978,0.00007961987,0.00053502835,0.00009879012,0.00006583712,0.000032326378,0.00031480545,0.00006852112],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014582419,0.00046758354,0.9959932,0.000056155044,0.00013566432,0.00041280335,0.00027636654,0.00027810354,0.00044076165,0.00022865682,0.0008174494,0.0007474529],"study_design_scores_gemma":[0.0023413324,0.000399419,0.98603714,0.0001975724,0.00022200916,0.0004529722,0.00007321329,0.0004890174,0.000041035582,0.00015262775,0.009413718,0.00017995146],"about_ca_topic_score_codex":0.000022728624,"about_ca_topic_score_gemma":0.000048855818,"teacher_disagreement_score":0.030991428,"about_ca_system_score_codex":0.000055929122,"about_ca_system_score_gemma":0.000088185734,"threshold_uncertainty_score":0.3668861},"labels":[],"label_agreement":null},{"id":"W3103904407","doi":"10.1186/s13223-020-00492-4","title":"Association between asthma and invasive pneumococcal disease risk: a systematic review and meta-analysis","year":2020,"lang":"en","type":"review","venue":"Allergy Asthma and Clinical Immunology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Wannan Medical College","keywords":"Meta-analysis; Pneumococcal disease; Medicine; Asthma; Intensive care medicine; Systematic review; Disease; MEDLINE; Internal medicine; Streptococcus pneumoniae; Biology; Microbiology","score_opus":0.06892990176937472,"score_gpt":0.37593081235332687,"score_spread":0.3070009105839522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3103904407","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0001806782,0.994324,0.000017093176,0.003205861,0.00007587308,0.0018817275,0.0002042849,0.000058571655,0.00005187352],"genre_scores_gemma":[0.00018857255,0.99725986,0.000013478885,0.0011279582,0.00012589592,0.0003924129,0.0001857329,0.000044313965,0.0006617877],"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99297607,0.0030360764,0.0023830794,0.0010035451,0.00023238837,0.00036883669],"domain_scores_gemma":[0.9929861,0.0037756634,0.0018671902,0.0006332153,0.00016916615,0.00056867773],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0012988508,0.00064884033,0.011986084,0.00025314683,0.00022547889,0.000052506148,0.00016232529,0.00088811,0.00017056619],"category_scores_gemma":[0.0048168227,0.00042578625,0.003009593,0.00059662905,0.0003118634,0.00007797266,0.00029726204,0.0014641446,0.000072624185],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014411633,0.00015526745,0.0013326205,0.20966579,0.7781874,0.0001197122,0.00002279897,3.6315686e-8,2.787763e-7,0.000060789756,0.00010030726,0.0103406245],"study_design_scores_gemma":[0.00031430187,0.00041449477,0.0067592533,0.006399837,0.68098927,0.000072300805,0.000009556267,0.0000013451303,1.34367255e-8,0.000023105797,0.30472285,0.00029365093],"about_ca_topic_score_codex":0.000023696028,"about_ca_topic_score_gemma":0.00006280068,"teacher_disagreement_score":0.30462256,"about_ca_system_score_codex":0.00007365987,"about_ca_system_score_gemma":0.00030288473,"threshold_uncertainty_score":0.9998194},"labels":[],"label_agreement":null},{"id":"W3106544988","doi":"10.1016/j.diagmicrobio.2020.115282","title":"Comparison of PCV-10 and PCV-13 vaccine coverage for invasive pneumococcal isolates obtained across Canadian geographic regions, SAVE 2011 to 2017","year":2020,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Sciences Centre; Manitoba Health; Public Health Agency of Canada; University of Manitoba","funders":"Pfizer Canada; Merck Canada","keywords":"Streptococcus pneumoniae; Serotype; Pneumococcal conjugate vaccine; Medicine; Veterinary medicine; Pneumococcal infections; Multiple drug resistance; Antimicrobial; Microbiology; Virology; Biology; Drug resistance; Antibiotics","score_opus":0.0179633509116242,"score_gpt":0.28888356359204165,"score_spread":0.27092021268041744,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3106544988","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98988384,0.0013805674,0.00016944946,0.005996107,0.000172774,0.0012667059,0.0009882497,0.00005358077,0.00008872728],"genre_scores_gemma":[0.9945181,0.00051049545,0.0000061417913,0.0043400032,0.00012247452,0.00014342896,0.00029457518,0.000022175112,0.000042594293],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986291,0.00008001853,0.00036948605,0.0004521514,0.00002912001,0.00044012064],"domain_scores_gemma":[0.9975647,0.0007963013,0.0001264935,0.00021061467,0.00019499887,0.0011069323],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000101237165,0.00025934688,0.0005688317,0.0001870082,0.00040079778,0.000022847935,0.00007183138,0.00020592251,0.00009784238],"category_scores_gemma":[0.0021436715,0.00023394602,0.00012937999,0.00016374471,0.00020153889,0.00006329381,0.00006755846,0.00020829399,0.00003249975],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030989692,0.00022306056,0.9478889,0.00028854952,0.00018622562,0.00004537573,0.0005879698,0.000043749198,0.042392973,0.00011548632,0.007638972,0.00027882354],"study_design_scores_gemma":[0.0036025532,0.0027785453,0.9559179,0.00016694784,0.00052717124,0.00014856229,0.00018951212,0.00009000064,0.0012652314,0.00019187274,0.03471489,0.00040679792],"about_ca_topic_score_codex":0.0018151943,"about_ca_topic_score_gemma":0.014029006,"teacher_disagreement_score":0.04112774,"about_ca_system_score_codex":0.000036035923,"about_ca_system_score_gemma":0.00028920785,"threshold_uncertainty_score":0.95400417},"labels":[],"label_agreement":null},{"id":"W3107514590","doi":"10.1136/bmjopen-2020-041093","title":"Predicting severe pneumonia in the emergency department: a global study of the Pediatric Emergency Research Networks (PERN)—study protocol","year":2020,"lang":"en","type":"article","venue":"BMJ Open","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario; University of Ottawa","funders":"University of California, Davis; Cincinnati Children's Hospital Medical Center","keywords":"Medicine; Emergency department; Logistic regression; Institutional review board; Pneumonia; Emergency medicine; Odds ratio; Community-acquired pneumonia; Prospective cohort study; Informed consent; Cohort study; Odds; Pneumonia severity index; Pediatrics; Internal medicine; Alternative medicine; Surgery; Pathology","score_opus":0.17351051297543685,"score_gpt":0.4880555494999768,"score_spread":0.31454503652453997,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3107514590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.67813104,0.0000071704135,0.0000015085877,0.0014549514,0.00015566076,0.3163593,0.0000067746923,0.000018465038,0.0038651314],"genre_scores_gemma":[0.78152305,0.0000032167795,0.0000015516437,0.00011081926,0.00042158063,0.21782699,0.0000010271435,0.000015191731,0.0000965593],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.995818,0.0014906703,0.0008466539,0.0004332027,0.0009963431,0.00041508942],"domain_scores_gemma":[0.9985885,0.00005733683,0.00022845124,0.0007893139,0.00020241638,0.00013396886],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022396413,0.00019197838,0.00034824995,0.000058044843,0.00051326724,0.00003839891,0.0010650719,0.000079171696,0.00021507472],"category_scores_gemma":[0.0004673472,0.000105217485,0.000105951774,0.0026664159,0.000032776283,0.000122034464,0.001012063,0.00058155577,0.000019373916],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000291363,0.0029039313,0.9880957,0.00010557518,0.00007195587,0.000057646357,0.005016016,0.00032826606,0.00003249051,0.000009154144,0.0029465917,0.00014132539],"study_design_scores_gemma":[0.0029538963,0.0029792478,0.98126024,0.000028982417,0.0001199045,0.000030867308,0.010771947,0.0005564613,0.0000010645894,0.00002435327,0.0011520965,0.00012095021],"about_ca_topic_score_codex":0.00046850208,"about_ca_topic_score_gemma":0.0023414239,"teacher_disagreement_score":0.103392035,"about_ca_system_score_codex":0.000072177325,"about_ca_system_score_gemma":0.00030482997,"threshold_uncertainty_score":0.42906445},"labels":[],"label_agreement":null},{"id":"W3108792265","doi":"10.1038/s41467-020-19887-3","title":"Mechanism and inhibition of Streptococcus pneumoniae IgA1 protease","year":2020,"lang":"en","type":"article","venue":"Nature Communications","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; U.S. Department of Health and Human Services; National Cancer Institute; National Institute on Aging; U.S. Department of Veterans Affairs; Cancer Center, University of Colorado","keywords":"Streptococcus pneumoniae; Protease; Microbiology; Virulence; Virulence factor; Cleavage (geology); Biology; Secretion; Monoclonal antibody; Chemistry; Enzyme; Antibody; Biochemistry; Immunology; Gene","score_opus":0.02673260329277435,"score_gpt":0.3022508744774377,"score_spread":0.2755182711846634,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3108792265","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91946,0.0013108754,0.00019684009,0.072999604,0.000057809397,0.0012608183,0.000074278134,0.00016828936,0.0044714925],"genre_scores_gemma":[0.996866,0.00016700996,0.0005591002,0.0022185976,0.00003875342,0.00007821458,0.000038521834,0.000011250902,0.000022553368],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9994313,0.00006203966,0.00018686069,0.00012762267,0.000109907916,0.0000822316],"domain_scores_gemma":[0.9989657,0.000056666948,0.000085805776,0.0006086308,0.00014280228,0.00014040824],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000068099296,0.00008358988,0.00015480087,0.00006334112,0.00014413877,0.000008222165,0.00011579169,0.00018194142,0.000018377956],"category_scores_gemma":[0.00020569112,0.00007356889,0.000056129877,0.0002586262,0.000116369396,0.000060661223,0.00013769808,0.0006842357,0.000009600286],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013796421,0.00027017665,0.01562905,0.0001164898,0.000049821007,0.000005106187,0.00074507244,0.0000015934972,0.9415724,0.039784007,0.0006303919,0.0011820993],"study_design_scores_gemma":[0.008181939,0.003314205,0.29611868,0.00084785174,0.0013614711,0.00020181407,0.002952438,0.0057026665,0.29144964,0.011440777,0.37715316,0.0012753955],"about_ca_topic_score_codex":0.0000035833195,"about_ca_topic_score_gemma":0.000013714085,"teacher_disagreement_score":0.65012276,"about_ca_system_score_codex":0.00001558173,"about_ca_system_score_gemma":0.00007466281,"threshold_uncertainty_score":0.30000523},"labels":[],"label_agreement":null},{"id":"W3108964893","doi":"10.1101/2020.11.18.20225029","title":"The Invasive Respiratory Infection Surveillance (IRIS) Initiative reveals significant reductions in invasive bacterial infections during the COVID-19 pandemic","year":2020,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"Public Health England; Wellcome Trust","keywords":"Streptococcus pneumoniae; Neisseria meningitidis; Haemophilus influenzae; Pandemic; Outbreak; Pneumonia; Transmission (telecommunications); Population; Medicine; Disease; Biology; Immunology; Virology; Coronavirus disease 2019 (COVID-19); Infectious disease (medical specialty); Microbiology; Environmental health; Internal medicine; Antibiotics","score_opus":0.09554214539056409,"score_gpt":0.33324378047376463,"score_spread":0.23770163508320052,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3108964893","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9802071,0.00023101483,0.00014528853,0.012328814,0.00318327,0.0027483923,0.00018833,0.0003886617,0.0005791305],"genre_scores_gemma":[0.99091387,0.0024037221,0.0000070926744,0.002834845,0.0018530994,0.0016843195,0.00007524321,0.000086314074,0.00014149472],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99438244,0.0021673567,0.0012504633,0.001047117,0.0005165835,0.00063604396],"domain_scores_gemma":[0.9943883,0.0025949809,0.0008650737,0.0012233427,0.00041462074,0.00051372783],"candidate_categories":["metaresearch","metaepi_narrow","sts","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.001760141,0.0006256484,0.00084829226,0.0004871583,0.0016950696,0.00019235256,0.0004031315,0.00061538233,0.000110298555],"category_scores_gemma":[0.013026819,0.00042352945,0.00046156763,0.0012425678,0.00082928047,0.00016148508,0.0005938003,0.0032366633,0.00009781684],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016240962,0.00016952546,0.8650455,0.00046871105,0.00030823358,0.00013307114,0.001485053,0.0009690803,0.13006984,0.000067103196,0.0010659294,0.000055565382],"study_design_scores_gemma":[0.0015483238,0.00034195106,0.95679855,0.0002880981,0.00020779597,0.00034474328,0.0005135286,0.000014550733,0.0013801528,0.0012682861,0.036742993,0.00055102934],"about_ca_topic_score_codex":0.00058207405,"about_ca_topic_score_gemma":0.0063020363,"teacher_disagreement_score":0.12868969,"about_ca_system_score_codex":0.0014571623,"about_ca_system_score_gemma":0.0037596857,"threshold_uncertainty_score":0.99982166},"labels":[],"label_agreement":null},{"id":"W3114352800","doi":"10.1542/neo.22-1-e25","title":"Protection of the Newborn Through Vaccination in Pregnancy","year":2021,"lang":"en","type":"review","venue":"NeoReviews","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"","keywords":"Medicine; Vaccination; Pregnancy; Pediatrics; Tetanus; Bordetella pertussis; Immunology","score_opus":0.12391232211050152,"score_gpt":0.3922257494317187,"score_spread":0.26831342732121716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3114352800","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000013795898,0.9757011,0.00007892655,0.00015811385,0.0004126099,0.0035869877,0.0000056548784,0.000016983504,0.020038255],"genre_scores_gemma":[0.0000012450846,0.9982556,0.00024132301,0.00008228009,0.00011872796,0.00072120543,0.000017147855,0.000029217012,0.00053326436],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99805915,0.00046998743,0.0008653831,0.00027713442,0.00018594507,0.0001423678],"domain_scores_gemma":[0.99866295,0.000036649515,0.0005498138,0.00062526856,0.00009688489,0.000028411545],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020599285,0.00024406132,0.0016330339,0.000100613615,0.00005032345,0.000007685087,0.0001237543,0.00027757708,0.00014737708],"category_scores_gemma":[0.0003251809,0.00013259407,0.00080722664,0.0011289597,0.0000243097,0.00005896351,0.000054644126,0.00056897075,0.00003301268],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[3.5150003e-7,0.00008835118,0.00002439048,0.029324684,0.000031219974,0.000004767854,0.000032620697,1.784678e-7,0.0000055782507,0.00016959172,0.00015225398,0.970166],"study_design_scores_gemma":[0.00014345524,0.000042444954,0.00013479161,0.11698282,0.00054961914,0.00011106972,0.0000032644962,6.0935844e-7,0.0000061194496,0.000027713917,0.88190854,0.00008955955],"about_ca_topic_score_codex":0.00001563805,"about_ca_topic_score_gemma":0.00003535422,"teacher_disagreement_score":0.97007644,"about_ca_system_score_codex":0.00016119273,"about_ca_system_score_gemma":0.00045366026,"threshold_uncertainty_score":0.54070294},"labels":[],"label_agreement":null},{"id":"W3116108856","doi":"10.1016/j.vaccine.2020.12.035","title":"Immunogenicity and safety of the 13-valent pneumococcal conjugate vaccine in 23-valent pneumococcal polysaccharide vaccine-naïve and previously immunized adult patients with severe chronic kidney disease","year":2020,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lakehead University; NOSM University","funders":"Pfizer Canada; Northern Ontario Academic Medicine Association","keywords":"Immunogenicity; Pneumococcal polysaccharide vaccine; Serotype; Medicine; Pneumococcal conjugate vaccine; Streptococcus pneumoniae; Immunization; Immunology; Pneumococcal vaccine; Antibody; Immunoglobulin G; Virology; Microbiology; Biology; Pneumococcal disease","score_opus":0.005943315585700329,"score_gpt":0.21601958561534423,"score_spread":0.2100762700296439,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3116108856","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98664194,0.001207892,0.00001186467,0.009024716,0.00015932092,0.002601015,0.00020925263,0.000088911525,0.000055093264],"genre_scores_gemma":[0.9962895,0.0014289183,0.000015379386,0.0018119257,0.00014674322,0.00009389901,0.000074597556,0.00007205767,0.00006701273],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99693507,0.00024970472,0.0010423389,0.00073441706,0.00042815518,0.0006103264],"domain_scores_gemma":[0.99747795,0.000114909,0.00040059397,0.0007775441,0.00031875484,0.00091023126],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00020372469,0.0005660544,0.001020739,0.00016786382,0.00025620108,0.0000308092,0.0002821694,0.00017061263,0.00010957079],"category_scores_gemma":[0.0004598715,0.0003658134,0.00021294193,0.00067880924,0.000049850903,0.00020956117,0.00041967613,0.0007441395,0.000011023158],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0051123714,0.00054187904,0.929775,0.00073493615,0.00029167897,0.0000365346,0.00038767152,0.00005632797,0.062170345,0.000032889464,0.00017789303,0.0006824851],"study_design_scores_gemma":[0.024502115,0.0014245897,0.96883464,0.00083505554,0.00060852495,0.0000820644,0.00006682572,0.00047386176,0.0016586802,0.000014844527,0.0010903169,0.00040850774],"about_ca_topic_score_codex":0.00016313829,"about_ca_topic_score_gemma":0.00014938616,"teacher_disagreement_score":0.060511664,"about_ca_system_score_codex":0.00021254044,"about_ca_system_score_gemma":0.0005226871,"threshold_uncertainty_score":0.99987936},"labels":[],"label_agreement":null},{"id":"W3116652705","doi":"","title":"Evolution and Characterization of Penicillin-Resistant Streptococcus pneumoniae in Canadian Hospitals 2007-2010","year":2012,"lang":"en","type":"article","venue":"Mspace (University of Manitoba)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Manitoba Medical Service Foundation; Heart and Stroke Foundation of Canada","keywords":"Streptococcus pneumoniae; Penicillin; Microbiology; Medicine; Antibiotics; Biology","score_opus":0.010119191141413275,"score_gpt":0.2029154445968098,"score_spread":0.19279625345539653,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3116652705","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99767977,0.00005659318,0.000043014996,0.0011121748,0.00014991699,0.00026970418,0.000043207132,0.000012689896,0.00063295715],"genre_scores_gemma":[0.99971193,0.00004520687,0.000017390808,0.00003071155,0.00003733811,3.9666114e-7,0.00001642104,0.000006246865,0.00013437208],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994301,0.00003400105,0.00009040384,0.00010819143,0.0001120796,0.00022522657],"domain_scores_gemma":[0.9994298,0.000013362965,0.00010122539,0.00014031558,0.00010399558,0.00021130775],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013844139,0.00007888658,0.00018896573,0.00030899202,0.00008545128,0.0000029216392,0.00004686287,0.00010117885,0.000018304027],"category_scores_gemma":[0.000023030238,0.000092846996,0.000043234595,0.00019496764,0.00009704254,0.00020021868,0.000023513237,0.00010378647,0.000011825111],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014005449,0.00005480151,0.79223824,0.00004659764,0.000014331463,0.0000074041673,0.00016544407,0.0000016520034,0.2071157,0.0001837351,0.00005925616,0.00009884699],"study_design_scores_gemma":[0.00045594896,0.00012839786,0.99325794,0.00007068734,0.000054418448,0.0000042390398,0.0017831372,0.00007196574,0.0004678793,0.0000057237216,0.0036195512,0.00008009089],"about_ca_topic_score_codex":0.08254749,"about_ca_topic_score_gemma":0.7547382,"teacher_disagreement_score":0.6721907,"about_ca_system_score_codex":0.00022480382,"about_ca_system_score_gemma":0.00014759746,"threshold_uncertainty_score":0.92356193},"labels":[],"label_agreement":null},{"id":"W3118425730","doi":"10.1093/ofid/ofaa439.1579","title":"1397. Long term impact of the 13-valent pneumococcal conjugate vaccine use in infant immunization program on all-cause pneumonia hospitalizations in British Columbia, Canada: a time series analysis","year":2020,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Pneumonia; Pediatrics; Confidence interval; Incidence (geometry); Cohort; Rate ratio; Pneumococcal pneumonia; Influenza vaccine; Immunization; Vaccination; Streptococcus pneumoniae; Internal medicine; Immunology; Antibiotics","score_opus":0.01120783011521311,"score_gpt":0.2740617023138574,"score_spread":0.2628538721986443,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3118425730","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957254,0.00004913428,0.0000033597107,0.0008766402,0.00007224033,0.002568582,0.00042100652,0.00007711196,0.00020653478],"genre_scores_gemma":[0.99838656,0.00009467589,0.0000015849254,0.00068289787,0.000020380883,0.00032511327,0.0002966307,0.000040850322,0.00015130568],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998043,0.00019635337,0.0006495271,0.00040908103,0.00029483353,0.00040717554],"domain_scores_gemma":[0.9987021,0.00007140911,0.0002707276,0.00046976432,0.00019009132,0.00029589233],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000078006655,0.0002275808,0.00066932477,0.00017874838,0.00023291861,0.00039977566,0.0002632159,0.00009686919,0.00020301704],"category_scores_gemma":[0.00041153282,0.00023619266,0.00030739728,0.002271725,0.000087101675,0.00048744,0.0002496015,0.00025326436,0.0000048653164],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005908196,0.0013854423,0.9913425,0.0000506923,0.0009768128,0.00012826738,0.00007248247,0.004240269,0.0009702626,0.0000056012595,0.00043439475,0.00033423185],"study_design_scores_gemma":[0.0017170818,0.0010411064,0.99481237,0.0002174786,0.001029722,0.000032597905,0.000046669207,0.00065071246,0.000041021936,0.000009158486,0.00015318656,0.00024889456],"about_ca_topic_score_codex":0.61762494,"about_ca_topic_score_gemma":0.9699629,"teacher_disagreement_score":0.352338,"about_ca_system_score_codex":0.0005303678,"about_ca_system_score_gemma":0.0010747802,"threshold_uncertainty_score":0.9631657},"labels":[],"label_agreement":null},{"id":"W3118496572","doi":"10.1093/ofid/ofaa439.338","title":"295. Is Herd Immunity from Pneumococcal Conjugate Vaccines Changing the Clinical Features of Invasive Pneumococcal Disease in Adults?","year":2020,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Sinai Health System","funders":"","keywords":"Medicine; Herd immunity; Serotype; Pneumococcal disease; Population; Vaccination; Case fatality rate; Streptococcus pneumoniae; Logistic regression; Disease; Pneumococcal vaccine; Pneumococcal infections; Pediatrics; Pneumococcal conjugate vaccine; Immunology; Internal medicine; Environmental health; Biology","score_opus":0.02616245364477383,"score_gpt":0.320474267390325,"score_spread":0.29431181374555115,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3118496572","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9849311,0.0005967514,0.000009042908,0.0104623195,0.000372062,0.0018607973,0.00046292978,0.0001168439,0.0011881352],"genre_scores_gemma":[0.9896861,0.00035714114,0.0000034512568,0.009127131,0.00034736257,0.00023989762,0.00013036394,0.00005211297,0.00005646672],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99735117,0.00040930774,0.00081392715,0.0005999276,0.00029603916,0.0005296279],"domain_scores_gemma":[0.99740756,0.0006652385,0.00032316844,0.000685433,0.00017979695,0.00073880836],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000214205,0.00036852653,0.0008354532,0.00016718569,0.0003602708,0.00012433727,0.00054928433,0.00016027773,0.00038122296],"category_scores_gemma":[0.0012539594,0.00027031437,0.00050427427,0.00074884226,0.00027939148,0.00035090113,0.0007600637,0.00067530206,0.000078424935],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010466476,0.0010469592,0.9911129,0.00013817196,0.00025524464,0.0002007482,0.00085846847,0.000036654408,0.0022631187,0.00015811465,0.0008946575,0.0019883066],"study_design_scores_gemma":[0.0040011765,0.0007598375,0.98967844,0.00048113053,0.00038717638,0.0000148019735,0.0012180217,0.00012573833,0.00044823016,0.00065716694,0.0019166323,0.00031165502],"about_ca_topic_score_codex":0.00082718267,"about_ca_topic_score_gemma":0.00048411862,"teacher_disagreement_score":0.004754955,"about_ca_system_score_codex":0.0000652796,"about_ca_system_score_gemma":0.0005460927,"threshold_uncertainty_score":0.9999749},"labels":[],"label_agreement":null},{"id":"W3118572295","doi":"10.1038/s41396-020-00867-w","title":"Negative frequency-dependent selection and asymmetrical transformation stabilise multi-strain bacterial population structures","year":2021,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"National Institute of Allergy and Infectious Diseases; Engineering and Physical Sciences Research Council; Department for International Development; Imperial College London; National Institute of General Medical Sciences; Medical Research Council; Royal Society; National Institutes of Health; Government of Canada; Wellcome Trust","keywords":"Biology; Locus (genetics); Recombination; Genetics; Population; Frequency-dependent selection; Evolutionary biology; Genome; Gene","score_opus":0.025118381719016068,"score_gpt":0.2948254535290908,"score_spread":0.2697070718100747,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3118572295","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9924428,0.00005451629,0.0039039247,0.002784383,0.0004402259,0.00016680846,0.000017662971,0.000024224903,0.00016548105],"genre_scores_gemma":[0.998651,0.00006646847,0.00054796104,0.00019955737,0.0004607303,0.0000034567906,0.000014201877,0.0000092800665,0.000047339337],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99904555,0.00020287844,0.00027325333,0.00010110512,0.00023587156,0.00014136125],"domain_scores_gemma":[0.99949706,0.000060175425,0.00010048367,0.00007050767,0.00016127506,0.00011048238],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002660906,0.00009816137,0.00014739418,0.00011105794,0.00038163422,0.00008689515,0.00003047473,0.00008826776,0.00023754584],"category_scores_gemma":[0.0001991492,0.00006226832,0.000070375536,0.00022885377,0.000033051794,0.00022170172,0.000007771103,0.00045757284,0.0000029832272],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014533149,0.00022869057,0.02959569,0.00004979094,0.00022327987,0.00004477504,0.0037531029,0.00036449856,0.93018675,0.0010393898,0.000075752105,0.03429294],"study_design_scores_gemma":[0.0026672096,0.00030145672,0.9679217,0.00003948772,0.00021837938,0.005271545,0.0009060126,0.0011450849,0.017283577,0.003652602,0.00045434284,0.00013861855],"about_ca_topic_score_codex":0.000032829896,"about_ca_topic_score_gemma":0.0001332553,"teacher_disagreement_score":0.938326,"about_ca_system_score_codex":0.00012691483,"about_ca_system_score_gemma":0.0001273879,"threshold_uncertainty_score":0.29352605},"labels":[],"label_agreement":null},{"id":"W3118842705","doi":"10.1093/ofid/ofaa439.481","title":"171. Short-course Antimicrobial Therapy for Paediatric Respiratory Infections (SAFER): a multicentre, Randomized, Controlled, Blinded, Noninferiority Trial","year":2020,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hamilton Health Sciences; McMaster University; Osteoporosis Canada; Children's Hospital of Eastern Ontario; St. Joseph’s Healthcare Hamilton; Hamilton Regional Laboratory Medicine Program; University of Ottawa","funders":"","keywords":"Medicine; Amoxicillin; Randomized controlled trial; Pneumonia; Placebo; Chest radiograph; Emergency department; Community-acquired pneumonia; Pediatrics; Surgery; Internal medicine; Antibiotics; Lung","score_opus":0.032591183334014485,"score_gpt":0.3329932272480349,"score_spread":0.30040204391402037,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3118842705","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9058728,0.0016779414,0.0031287074,0.010553734,0.004043526,0.06013785,0.0007665937,0.0012169426,0.012601912],"genre_scores_gemma":[0.97905695,0.0005002818,0.00002547322,0.013361733,0.0017982312,0.0048930654,0.00009906741,0.00011822263,0.00014698686],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9959871,0.0005953368,0.0012952962,0.0008851656,0.00040780165,0.00082931085],"domain_scores_gemma":[0.99632215,0.0011277515,0.00044611003,0.0005909224,0.00056410156,0.0009489406],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00070008636,0.0006645008,0.0027283698,0.00031781985,0.0011043622,0.0004551221,0.00035318817,0.00034178715,0.00036306222],"category_scores_gemma":[0.0023243478,0.0005193477,0.0020945692,0.0007829767,0.00034191264,0.0005605863,0.00022256678,0.00051048695,0.00012846025],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.84370035,0.00742899,0.12153761,0.00014713642,0.0025808893,0.000058087884,0.0001594256,0.00018598425,0.0016347076,0.00086670707,0.017124362,0.004575758],"study_design_scores_gemma":[0.9537558,0.0037520772,0.0031756696,0.00005684677,0.0029027006,0.000028196233,0.00009712873,0.00052631315,0.00023663494,0.00015922234,0.03464522,0.00066418585],"about_ca_topic_score_codex":0.000088367466,"about_ca_topic_score_gemma":0.00011184699,"teacher_disagreement_score":0.11836194,"about_ca_system_score_codex":0.00015774035,"about_ca_system_score_gemma":0.0014639641,"threshold_uncertainty_score":0.9997258},"labels":[],"label_agreement":null},{"id":"W3119274497","doi":"10.1093/ofid/ofaa439.1656","title":"1475. Impact of a Routine Infant PCV Program on the Serotype Distribution of Episodes of Invasive Pneumococcal Disease (IPD) and Non-bacteremic Pneumococcal Pneumonia in Adults","year":2020,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Sinai Health System","funders":"","keywords":"Medicine; Pneumococcal disease; Pneumococcal conjugate vaccine; Serotype; Pneumonia; Herd immunity; Pediatrics; Pneumococcal pneumonia; Streptococcus pneumoniae; Population; Immunology; Internal medicine; Vaccination; Environmental health; Antibiotics; Biology; Microbiology","score_opus":0.014032303095460387,"score_gpt":0.29310812056059826,"score_spread":0.2790758174651379,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3119274497","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99393314,0.000082699655,0.0000066674993,0.0014822265,0.00005112981,0.0031800417,0.0008206484,0.000049658232,0.00039377145],"genre_scores_gemma":[0.99913204,0.000115004375,0.0000018594901,0.00020187243,0.000040850595,0.00027755965,0.00019066512,0.000034109857,0.0000060697057],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9979704,0.00017812749,0.0007419619,0.000434416,0.00028562095,0.00038947831],"domain_scores_gemma":[0.9980155,0.00031062966,0.0004697513,0.0004503253,0.00025352446,0.00050022337],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014898911,0.0003492008,0.0007981189,0.00014023537,0.000115261646,0.000040026447,0.00025496102,0.000115005,0.000059234942],"category_scores_gemma":[0.001016381,0.0002342115,0.0003631248,0.00069854554,0.00039091698,0.00022678368,0.0002790893,0.0003085964,0.000007644918],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017412136,0.0022353746,0.9522077,0.00056103437,0.00019246095,0.000026438422,0.00023485576,0.00016179653,0.04124409,0.00019031305,0.00005671322,0.0011480062],"study_design_scores_gemma":[0.0027189206,0.004947435,0.98749423,0.0010748785,0.00024372342,0.000014685751,0.00017824152,0.0005826741,0.0023248706,0.00016279721,0.000040538915,0.00021701287],"about_ca_topic_score_codex":0.00073094014,"about_ca_topic_score_gemma":0.00021835575,"teacher_disagreement_score":0.03891922,"about_ca_system_score_codex":0.00012221489,"about_ca_system_score_gemma":0.0006080056,"threshold_uncertainty_score":0.95508677},"labels":[],"label_agreement":null},{"id":"W3119528437","doi":"10.1093/ofid/ofaa439.1643","title":"1462. The protective effect of pneumococcal vaccination on cardiovascular disease in adults: A systematic review and meta-analysis","year":2020,"lang":"en","type":"review","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Medicine; Meta-analysis; Myocardial infarction; Vaccination; Internal medicine; Relative risk; Placebo; Adverse effect; Pneumococcal polysaccharide vaccine; Population; Disease; Pediatrics; Immunology; Confidence interval; Pneumococcal disease; Streptococcus pneumoniae; Pathology; Environmental health","score_opus":0.02800337818246425,"score_gpt":0.33245216590279736,"score_spread":0.3044487877203331,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3119528437","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000011872437,0.97072345,0.000013804023,0.0003807248,0.0000334079,0.02809569,0.0003959035,0.000051802537,0.00029333076],"genre_scores_gemma":[0.011286396,0.969556,2.9427832e-7,0.00042178328,0.000023056358,0.01849175,0.00011777391,0.000065118795,0.000037871003],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9946302,0.002592573,0.0011636053,0.0008165354,0.0005082159,0.00028886079],"domain_scores_gemma":[0.9967719,0.0006879781,0.0007441052,0.0013009958,0.0001546738,0.00034040416],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00082716503,0.00072094717,0.010644618,0.0005039895,0.00020046986,0.00009371377,0.00036688845,0.00015676969,0.00009228861],"category_scores_gemma":[0.0018637902,0.00035817653,0.0069397357,0.002126074,0.000072954244,0.00015202771,0.00027004594,0.00051376485,0.000032405227],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004069911,0.00024936724,0.0003306419,0.789929,0.20483129,0.000074903655,0.00001427534,0.000023113878,2.6298451e-8,0.00004590769,0.000023181694,0.0044376296],"study_design_scores_gemma":[0.0005859054,0.00073078787,0.00036145656,0.059583515,0.9276431,0.00003661467,0.0000070394367,0.000015431426,1.9909484e-7,0.000020549533,0.010703356,0.00031201815],"about_ca_topic_score_codex":0.00012316162,"about_ca_topic_score_gemma":0.0000332799,"teacher_disagreement_score":0.7303454,"about_ca_system_score_codex":0.00023920494,"about_ca_system_score_gemma":0.00031951748,"threshold_uncertainty_score":0.99988705},"labels":[],"label_agreement":null},{"id":"W3119741022","doi":"10.1093/ofid/ofaa439.1545","title":"1363. Assessment and Quantification of Nasopharyngeal <i>Streptococcus pneumoniae</i> Colonization Does Not Discriminate Between Children with Viral and Bacterial Respiratory Infection","year":2020,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Joseph’s Healthcare Hamilton; McMaster University","funders":"","keywords":"Medicine; Cohort; Streptococcus pneumoniae; Pneumonia; Carriage; Internal medicine; Community-acquired pneumonia; Bacterial pneumonia; Cohort study; Etiology; Empyema; Pneumococcal conjugate vaccine; Pediatrics; Immunology; Surgery; Pathology; Antibiotics; Microbiology","score_opus":0.021760224871619754,"score_gpt":0.30277032107020746,"score_spread":0.2810100961985877,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3119741022","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957505,0.00003262112,0.0002820136,0.0013193293,0.000110926034,0.0016933099,0.00029162638,0.000116883275,0.00040282897],"genre_scores_gemma":[0.9986507,0.000060228453,0.000014085798,0.000649847,0.00017148288,0.00016778664,0.00023072715,0.000039325518,0.000015776848],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985189,0.00013472974,0.0003977899,0.000492469,0.0002234936,0.00023263064],"domain_scores_gemma":[0.99893117,0.00005969302,0.00029992708,0.00023239604,0.0001507658,0.00032603432],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000107400534,0.00025927558,0.00047459497,0.000119058954,0.00036570983,0.00017852895,0.000083543695,0.000110484914,0.00003296156],"category_scores_gemma":[0.00006766974,0.00019138362,0.0000650367,0.0002505719,0.00024655592,0.0005619801,0.00017635559,0.00018611149,0.000003581198],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013056207,0.00022899584,0.94919425,0.00012318825,0.00019107439,0.0000033788654,0.00008647681,0.00001397944,0.04686581,0.000302216,0.00009029147,0.0027697987],"study_design_scores_gemma":[0.0025934353,0.0022709998,0.98632276,0.00008257131,0.0006398854,0.000014508568,0.000040952902,0.000050363604,0.0070211324,0.00006998194,0.00065245904,0.00024097106],"about_ca_topic_score_codex":0.00015926291,"about_ca_topic_score_gemma":0.00010549503,"teacher_disagreement_score":0.039844677,"about_ca_system_score_codex":0.00007124586,"about_ca_system_score_gemma":0.00022742075,"threshold_uncertainty_score":0.7804398},"labels":[],"label_agreement":null},{"id":"W3119748498","doi":"10.1093/ofid/ofaa439.1099","title":"911. Assessment of Representativeness of IPD Surveillance Conducted by the National Microbiology Laboratory of Canada","year":2020,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Pfizer (Canada)","funders":"","keywords":"Representativeness heuristic; Medicine; Epidemiology; Incidence (geometry); Serotype; Pneumococcal disease; Notifiable disease; Population; Public health surveillance; Epidemiologic Surveillance; Public health; Environmental health; Demography; Pediatrics; Streptococcus pneumoniae; Virology; Pathology; Biology; Statistics; Microbiology","score_opus":0.019059830593359813,"score_gpt":0.3205312909434927,"score_spread":0.3014714603501329,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3119748498","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.986533,0.00015114286,0.00003011532,0.0036113649,0.00014641776,0.0006103756,0.002986613,0.000014572749,0.00591642],"genre_scores_gemma":[0.9982781,0.000014608988,0.000004026068,0.0014861944,0.000018406161,0.000036455665,0.00010206767,0.000009734134,0.000050416744],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990006,0.00019682411,0.00033137604,0.00017006818,0.00017161045,0.00012953117],"domain_scores_gemma":[0.9986461,0.00021389917,0.00030541015,0.0001523104,0.00058551214,0.00009681705],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011683354,0.000100111916,0.0003574448,0.000030475143,0.00008846559,0.0000066317452,0.00016044655,0.000038431346,0.00019832302],"category_scores_gemma":[0.00033169615,0.00007217348,0.000064442764,0.00034047957,0.0002180549,0.000063381995,0.000105843326,0.000090414025,5.359261e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040635703,0.00022704533,0.7121938,0.000094371644,0.00021154869,0.000002132273,0.000026986969,0.00008907908,0.26299685,0.00038843046,0.023699736,0.000029396277],"study_design_scores_gemma":[0.0030150833,0.000823729,0.9001077,0.00007575681,0.000138529,0.000022810216,0.00059794326,0.0001005463,0.06479815,0.00010729186,0.029997779,0.00021470216],"about_ca_topic_score_codex":0.013097417,"about_ca_topic_score_gemma":0.011548565,"teacher_disagreement_score":0.19819872,"about_ca_system_score_codex":0.000073768286,"about_ca_system_score_gemma":0.0021236,"threshold_uncertainty_score":0.9934744},"labels":[],"label_agreement":null},{"id":"W3119995238","doi":"10.1093/ofid/ofaa439.342","title":"299. Paediatric Collaborative Network on Infections in Canada (PICNIC) Study of the Current Landscape of Gram Negative Bacteremias","year":2020,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Stollery Children's Hospital; Dalhousie University; University of Alberta; Children's Hospital of Eastern Ontario; Western University; University of Manitoba; Montreal Children's Hospital; Queen's University; London Health Sciences Centre; McMaster University","funders":"","keywords":"Medicine; Bacteremia; Acinetobacter baumannii; Incidence (geometry); Internal medicine; Mortality rate; Acinetobacter; Drug resistance; Multiple drug resistance; Intensive care medicine; Pseudomonas aeruginosa; Pediatrics; Emergency medicine; Microbiology; Antibiotics","score_opus":0.013760058198639345,"score_gpt":0.2696858852884829,"score_spread":0.25592582708984357,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3119995238","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99176496,0.000162754,0.000002897508,0.0009615403,0.00054567016,0.0022974722,0.00018195402,0.000023335015,0.004059408],"genre_scores_gemma":[0.99894667,0.000059967657,6.527584e-7,0.0006593355,0.00010183611,0.00019131458,0.00001136217,0.00001850863,0.000010335276],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984418,0.0002672757,0.00046111646,0.00027785279,0.0002911699,0.000260796],"domain_scores_gemma":[0.9986726,0.00027629972,0.0003149617,0.00031192685,0.0002188509,0.0002053437],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000066347675,0.00020293762,0.0005010349,0.00009559528,0.00021043926,0.000024455905,0.00020177779,0.000038024667,0.0000818632],"category_scores_gemma":[0.00040539465,0.00014197025,0.000108763146,0.0020218042,0.000057918583,0.000107549124,0.00021334697,0.00034245304,0.0000041511985],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000098054654,0.001747969,0.9854797,0.000052121708,0.00013780782,0.0000071976133,0.0003909112,0.004671875,0.000017482078,0.000094540745,0.0056087156,0.0016935999],"study_design_scores_gemma":[0.0033016275,0.0024849917,0.988331,0.0001335469,0.00027849764,0.0000028617098,0.0018588416,0.00012483097,0.000051791307,0.000115905335,0.0031523278,0.00016374921],"about_ca_topic_score_codex":0.079572186,"about_ca_topic_score_gemma":0.6512467,"teacher_disagreement_score":0.5716745,"about_ca_system_score_codex":0.00024532335,"about_ca_system_score_gemma":0.0025221969,"threshold_uncertainty_score":0.926557},"labels":[],"label_agreement":null},{"id":"W3122939946","doi":"10.9778/cmajo.20200013","title":"Type 2 diabetes mellitus and risk of community-acquired pneumonia: a systematic review and meta-analysis of observational studies","year":2021,"lang":"en","type":"review","venue":"CMAJ Open","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"McGill University; Jewish General Hospital; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Meta-analysis; Relative risk; Odds ratio; Type 2 diabetes; Observational study; Confidence interval; MEDLINE; Cohort study; Diabetes mellitus; CINAHL; Publication bias; Internal medicine; Psychological intervention; Endocrinology; Psychiatry","score_opus":0.3669689954754703,"score_gpt":0.4515140954519123,"score_spread":0.084545099976442,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3122939946","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0002596998,0.9967216,5.8616024e-7,0.0001519099,0.000026953265,0.0024814093,0.00028202028,0.0000070376263,0.00006878444],"genre_scores_gemma":[0.00007963662,0.99871963,0.00004424364,0.00028753997,0.0000062669715,0.0004114008,0.00016179521,0.000020584965,0.00026891148],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99610156,0.0020188983,0.0013357738,0.0002150674,0.00020882694,0.00011984808],"domain_scores_gemma":[0.99566114,0.0015498535,0.001265116,0.0008547734,0.00058928214,0.000079822945],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018205084,0.00031848063,0.0133672105,0.00023686358,0.00014925141,0.000025940233,0.00024303148,0.00012987856,0.00007955083],"category_scores_gemma":[0.0017804467,0.00018925215,0.0011545727,0.001295943,0.00020444625,0.00007387318,0.0004724996,0.00026388787,0.000002077482],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[4.6085987e-7,0.00006660897,0.00021894556,0.6661062,0.33269888,0.0000017112405,0.00010991792,2.1436855e-7,0.0000016271517,0.000041677933,0.000062698135,0.00069103873],"study_design_scores_gemma":[0.00007655603,0.000100472236,0.00027397444,0.06052648,0.9143761,0.000012065294,0.000109286666,9.1287615e-7,7.7049236e-7,0.000009578,0.024380239,0.00013357517],"about_ca_topic_score_codex":0.00007154725,"about_ca_topic_score_gemma":0.0000676659,"teacher_disagreement_score":0.60557973,"about_ca_system_score_codex":0.000032030326,"about_ca_system_score_gemma":0.00018880692,"threshold_uncertainty_score":0.9137558},"labels":[],"label_agreement":null},{"id":"W3127360848","doi":"10.26443/mjm.v4i1.418","title":"Penicillin Resistant Bacteremic Pneumococcal Pneumonia","year":2020,"lang":"en","type":"article","venue":"McGill Journal of Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Royal Victoria Hospital","funders":"","keywords":"Medicine; Pneumonia; Pneumococcal pneumonia; Penicillin; Streptococcus pneumoniae; Bacteremia; Microbiology; Intensive care medicine; Antibiotics; Internal medicine","score_opus":0.05608730816184189,"score_gpt":0.2994271245250787,"score_spread":0.24333981636323682,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3127360848","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.78714824,0.0005368568,0.00012541078,0.20412351,0.00079844944,0.0002487514,0.000016129126,0.0000632326,0.006939444],"genre_scores_gemma":[0.9773188,0.0003296995,0.00008438837,0.020496394,0.0015723876,0.0000017920227,0.000003197416,0.000031785214,0.00016150934],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978696,0.00009669245,0.0009493369,0.00019425804,0.0006125869,0.00027750997],"domain_scores_gemma":[0.9980775,0.000117305324,0.0004385332,0.00020183851,0.00039379759,0.0007710412],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044594708,0.00021451717,0.00075297995,0.0002132517,0.000139789,0.0000058566966,0.00017969521,0.0001184242,0.00048487954],"category_scores_gemma":[0.0007255494,0.00013821115,0.00022841869,0.0003951678,0.000169788,0.00010215209,0.000035320565,0.0007706511,0.00006662114],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045964413,0.00009114986,0.0025028354,0.000091253154,0.00013497323,0.0011074861,0.00017531599,0.000009389973,0.98903877,0.000110863075,0.003945239,0.0023330618],"study_design_scores_gemma":[0.007161961,0.0078060827,0.10037309,0.00085124193,0.0006714318,0.0045999656,0.00039691437,0.00007789936,0.0063872784,0.000105421655,0.8713305,0.00023820435],"about_ca_topic_score_codex":0.0000058097576,"about_ca_topic_score_gemma":0.0000020154218,"teacher_disagreement_score":0.98265153,"about_ca_system_score_codex":0.000106545296,"about_ca_system_score_gemma":0.00012882889,"threshold_uncertainty_score":0.56360877},"labels":[],"label_agreement":null},{"id":"W3128860369","doi":"10.3390/geriatrics6010013","title":"Pneumococcal Pneumonia and Invasive Pneumococcal Disease in Those 65 and Older: Rates of Detection, Risk Factors, Vaccine Effectiveness, Hospitalisation and Mortality","year":2021,"lang":"en","type":"review","venue":"Geriatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Medicine; Vaccination; Pneumonia; Pneumococcal vaccine; Pneumococcal pneumonia; Incidence (geometry); Population; Pneumococcal infections; Intensive care medicine; Infectious disease (medical specialty); Carriage; Pediatrics; Disease; Streptococcus pneumoniae; Immunology; Internal medicine; Environmental health","score_opus":0.030198581979452844,"score_gpt":0.3338156477730723,"score_spread":0.30361706579361947,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3128860369","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5286758,0.46975607,0.000017465336,0.000012267812,0.00019537994,0.0011637426,0.0001483076,0.000027530106,0.0000034370876],"genre_scores_gemma":[0.29840988,0.70113397,0.000006142091,0.000005961641,0.000121589015,0.00013910432,0.00013008658,0.000048098373,0.000005186602],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99677527,0.00081315386,0.0009354582,0.0008732573,0.00026181873,0.00034106657],"domain_scores_gemma":[0.99726194,0.0010243689,0.0006281057,0.00045789438,0.0002023524,0.00042535632],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00061858475,0.00064094696,0.002260857,0.00055961387,0.00019549603,0.0000724536,0.00007615705,0.00050909276,0.000008589308],"category_scores_gemma":[0.0012406909,0.00052090915,0.00029990816,0.00089403486,0.00015606052,0.00018758567,0.00018462274,0.0007114006,0.0000012119218],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036576243,0.0003463947,0.8996634,0.02973297,0.0003840077,0.00013362149,0.00021723412,0.000003483682,0.0015327727,0.000022434942,0.000002323294,0.06792481],"study_design_scores_gemma":[0.0010462201,0.00029641634,0.9824919,0.0046273894,0.0031728195,0.00008736228,0.000059039256,0.00001535123,0.00008847344,0.00007788653,0.0075594066,0.00047774042],"about_ca_topic_score_codex":0.00024003972,"about_ca_topic_score_gemma":0.00012703062,"teacher_disagreement_score":0.23137788,"about_ca_system_score_codex":0.00015325601,"about_ca_system_score_gemma":0.0005360935,"threshold_uncertainty_score":0.99972427},"labels":[],"label_agreement":null},{"id":"W3131800725","doi":"10.1016/j.vaccine.2021.01.070","title":"Similar impact and replacement disease after pneumococcal conjugate vaccine introduction in hospitalised children with invasive pneumococcal disease in Europe and North America","year":2021,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Centre hospitalier universitaire de Québec; Université Laval","funders":"Sanofi; GlaxoSmithKline; Pfizer","keywords":"Pneumococcal conjugate vaccine; Medicine; Pneumococcal disease; Incidence (geometry); Pediatrics; Streptococcus pneumoniae; Pneumococcal infections; Serotype; Vaccination; Antibiotics; Virology","score_opus":0.004693498706904173,"score_gpt":0.2271699969672556,"score_spread":0.22247649826035143,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3131800725","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9882383,0.0009503399,0.000007579693,0.009661082,0.00006906728,0.0009263817,0.000085392705,0.00004964496,0.000012241916],"genre_scores_gemma":[0.99721897,0.0012032316,0.000016353662,0.0007489906,0.00028251004,0.00013295715,0.00027778847,0.000045560726,0.000073623334],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99810493,0.00014528321,0.00041462938,0.00074670365,0.00019533312,0.00039314936],"domain_scores_gemma":[0.9985124,0.00004612866,0.0001020037,0.000479865,0.00017088806,0.00068870775],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00009640267,0.00034902114,0.0005029864,0.0002532499,0.000075410506,0.00004838164,0.00004792526,0.000050540675,0.0001487959],"category_scores_gemma":[0.00033696988,0.0002631759,0.000057966,0.0009303111,0.000036489233,0.00022027938,0.00011252646,0.0003498621,0.000009488687],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027656883,0.0005737907,0.9875876,0.00009416382,0.00010329442,0.0011694625,0.00015965525,0.00027706905,0.006776464,0.0000021353173,0.00010666897,0.00038401122],"study_design_scores_gemma":[0.0056443918,0.00090677507,0.9911287,0.0001543177,0.00023348865,0.00012594573,0.000041869043,0.00018275286,0.00013082435,0.000008882269,0.001141942,0.0003001172],"about_ca_topic_score_codex":0.000052789495,"about_ca_topic_score_gemma":0.00048240507,"teacher_disagreement_score":0.008980715,"about_ca_system_score_codex":0.0001099393,"about_ca_system_score_gemma":0.0003335357,"threshold_uncertainty_score":0.99998206},"labels":[],"label_agreement":null},{"id":"W3132659034","doi":"10.3390/microorganisms9020449","title":"A Narrative Review of the Molecular Epidemiology and Laboratory Surveillance of Vaccine Preventable Bacterial Meningitis Agents: Streptococcus pneumoniae, Neisseria meningitidis, Haemophilus influenzae and Streptococcus agalactiae","year":2021,"lang":"en","type":"review","venue":"Microorganisms","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Neisseria meningitidis; Streptococcus pneumoniae; Microbiology; Streptococcus agalactiae; Meningitis; Serotype; Haemophilus influenzae; Vaccination; Meningococcal vaccine; Virology; Biology; Conjugate vaccine; Herd immunity; Immunology; Medicine; Streptococcus; Bacteria; Antibiotics; Pediatrics","score_opus":0.02252043309164381,"score_gpt":0.3341876394585238,"score_spread":0.31166720636688,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3132659034","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0537079,0.9423356,0.0000062492145,0.00031691563,0.0003378556,0.0026784053,0.00052935624,0.000032546763,0.00005515142],"genre_scores_gemma":[0.0020149867,0.99683356,0.00006870517,0.0003903945,0.00010480621,0.00021132063,0.00019880674,0.000099883466,0.000077561395],"study_design_codex":"systematic_review","study_design_gemma":"not_applicable","domain_scores_codex":[0.9950938,0.0015682972,0.0018677992,0.00081717403,0.00019092068,0.00046200963],"domain_scores_gemma":[0.99618447,0.00039508363,0.0017873099,0.0009637574,0.0004351034,0.00023429577],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008888213,0.00072119315,0.004378197,0.00016423619,0.0001727551,0.000019514582,0.00025599878,0.00048146548,0.0003065365],"category_scores_gemma":[0.0011533991,0.0005169417,0.0005268842,0.00082328037,0.0002936162,0.00009637792,0.00039038272,0.0006458464,0.0000030171057],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006843731,0.0010053649,0.04465962,0.42521363,0.0074892114,0.00034829133,0.0017571318,0.0000022745817,0.42239615,0.00030511527,0.009969855,0.0867849],"study_design_scores_gemma":[0.0013657542,0.0005314094,0.007726136,0.11610164,0.002714557,0.0005668815,0.00015168323,4.3014253e-7,0.0065528485,0.000017881848,0.8635808,0.00068993995],"about_ca_topic_score_codex":0.00003868742,"about_ca_topic_score_gemma":0.00002514573,"teacher_disagreement_score":0.853611,"about_ca_system_score_codex":0.00013977062,"about_ca_system_score_gemma":0.0009809597,"threshold_uncertainty_score":0.9997282},"labels":[],"label_agreement":null},{"id":"W3132899079","doi":"10.3389/fmicb.2021.637813","title":"The Emergence of Invasive Streptococcus pneumoniae Serotype 24F in Lebanon: Complete Genome Sequencing Reveals High Virulence and Antimicrobial Resistance Characteristics","year":2021,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Univerzita Karlova v Praze; Pfizer","keywords":"Multilocus sequence typing; Serotype; Streptococcus pneumoniae; Biology; Virulence; Antibiotic resistance; Microbiology; Typing; Genome; Penicillin; Whole genome sequencing; Genetics; Genotype; Gene; Antibiotics","score_opus":0.013640189291777733,"score_gpt":0.23399231738296578,"score_spread":0.22035212809118804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3132899079","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99613166,0.001203899,0.0001669221,0.0010003654,0.0008096273,0.000389265,0.00018747292,0.000012606321,0.0000981914],"genre_scores_gemma":[0.9960323,0.0022408639,0.0007603722,0.0005198855,0.000058264974,0.000023151284,0.000059293205,0.000016175798,0.00028970913],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983516,0.0002524074,0.0005938406,0.00038819024,0.00004638374,0.00036762527],"domain_scores_gemma":[0.99910873,0.00012357564,0.00021943658,0.00034500656,0.000147091,0.00005616306],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002769746,0.00017820614,0.0005459628,0.00014116822,0.00012956973,0.00001149222,0.00014837588,0.00017421303,0.000021873966],"category_scores_gemma":[0.00024328673,0.0001506265,0.00005679917,0.00038712734,0.0004517722,0.00004916843,0.000104425606,0.00036697867,0.000004367288],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043201257,0.000030279789,0.22736686,0.00012350922,0.00003335258,0.00012365043,0.0002097984,0.0000067052315,0.7713916,0.00004852992,0.00051782385,0.000104727784],"study_design_scores_gemma":[0.001959224,0.0002783615,0.8824257,0.0009850111,0.00008963239,0.00033459082,0.0011373997,0.00002253711,0.096995436,0.00045678383,0.014806441,0.0005088324],"about_ca_topic_score_codex":0.000026113185,"about_ca_topic_score_gemma":0.0005797428,"teacher_disagreement_score":0.6743961,"about_ca_system_score_codex":0.00012440127,"about_ca_system_score_gemma":0.0003195062,"threshold_uncertainty_score":0.614237},"labels":[],"label_agreement":null},{"id":"W3134338730","doi":"10.1186/s12890-021-01433-6","title":"A feasibility study evaluating a reservoir storage system for continuous oxygen delivery for children with hypoxemia in Kenya","year":2021,"lang":"en","type":"article","venue":"BMC Pulmonary Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Women and Children’s Health Research Institute; University of Alberta","funders":"","keywords":"Medicine; Hypoxemia; Oxygen delivery; Intensive care medicine; Oxygen; Medical emergency; Emergency medicine; Anesthesia","score_opus":0.06713108020892287,"score_gpt":0.3455161541022054,"score_spread":0.2783850738932825,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3134338730","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98988044,0.0008431478,0.000827505,0.00073985534,0.0002738463,0.006880002,0.000061212115,0.00013552932,0.0003584314],"genre_scores_gemma":[0.996256,0.0000065703357,0.00071142195,0.00026504073,0.0006841303,0.0011806933,0.00015953474,0.000059045356,0.00067757367],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9971993,0.0003180799,0.00071892684,0.0007699155,0.0005183039,0.00047545633],"domain_scores_gemma":[0.99758196,0.0005938862,0.00020276222,0.00073027756,0.00064835383,0.00024277566],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018262197,0.0003125474,0.0009261103,0.00022738012,0.00024196417,0.000013285725,0.00014061939,0.00013858125,0.000024176112],"category_scores_gemma":[0.0012335693,0.00022345102,0.00014529664,0.0005737943,0.00011695928,0.00011351992,0.00006475853,0.0002883819,0.000003438807],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023012802,0.0015577032,0.9642369,0.0009274771,0.00021539393,0.00035541703,0.0005555298,0.00020016957,0.02845002,0.000019801482,0.00028200532,0.0008982608],"study_design_scores_gemma":[0.015011408,0.006385251,0.96365786,0.0011448225,0.0007252208,0.0011484277,0.008023002,0.0031172975,0.00015599004,0.000023905408,0.00033834705,0.00026848092],"about_ca_topic_score_codex":0.00016163124,"about_ca_topic_score_gemma":0.00048123943,"teacher_disagreement_score":0.028294029,"about_ca_system_score_codex":0.00039927792,"about_ca_system_score_gemma":0.00073984027,"threshold_uncertainty_score":0.9112068},"labels":[],"label_agreement":null},{"id":"W3135628987","doi":"10.1016/j.chest.2021.02.048","title":"Persistent Lung Inflammation After Clinical Resolution of Community-Acquired Pneumonia as Measured by 18FDG-PET/CT Imaging","year":2021,"lang":"en","type":"article","venue":"CHEST Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; University of Ottawa","funders":"National Institute on Aging; Canadian Institutes of Health Research; National Institutes of Health; Bristol-Myers Squibb Canada; Lantheus Medical Imaging; Amgen; Edwards Lifesciences; University of Ottawa Heart Institute Foundation; American College of Radiology Imaging Network; National Heart, Lung, and Blood Institute; Heart and Stroke Foundation of Canada; Pfizer; AstraZeneca; Microsoft; University of Ottawa; Merck","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Lung; Internal medicine; Parenchyma; Inflammation; Stage (stratigraphy); Bacterial pneumonia; Gastroenterology; Pathology; Biology","score_opus":0.036648843246099315,"score_gpt":0.3264533538698322,"score_spread":0.2898045106237329,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3135628987","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9922787,0.0010911296,0.00028323024,0.0044666054,0.0005370787,0.00011029565,0.0000059069457,0.00003170066,0.0011953282],"genre_scores_gemma":[0.99838316,0.00023901727,0.000118231284,0.00058282027,0.00033564633,0.000007925513,0.000021066688,0.000021360065,0.00029078536],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9978544,0.0006794122,0.00073525915,0.00012184917,0.00037370986,0.00023536413],"domain_scores_gemma":[0.9984722,0.000112621994,0.0002932041,0.00033240952,0.00052753574,0.00026199227],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012405023,0.00014474972,0.00034790538,0.0001135713,0.00037940114,0.000056189263,0.00009361282,0.000032097614,0.00015696941],"category_scores_gemma":[0.0006853504,0.00012952145,0.00041353444,0.00020836382,0.00016989208,0.00019395657,0.00005511881,0.0008246713,0.000025207304],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002314594,0.00073518354,0.28561568,0.0003010135,0.00041364113,0.0016665766,0.0008819996,0.000041949545,0.70102125,0.000012220431,0.0028711283,0.006207903],"study_design_scores_gemma":[0.005847913,0.0007655314,0.7844772,0.0013313149,0.001420734,0.055157505,0.0045000934,0.0016137301,0.03685375,0.00014823867,0.107361436,0.00052255637],"about_ca_topic_score_codex":0.000013373741,"about_ca_topic_score_gemma":0.000009437289,"teacher_disagreement_score":0.6641675,"about_ca_system_score_codex":0.0001971675,"about_ca_system_score_gemma":0.00037962597,"threshold_uncertainty_score":0.52817315},"labels":[],"label_agreement":null},{"id":"W3137902539","doi":"10.1111/mmi.14718","title":"Competence pili in <i>Streptococcus pneumoniae</i> are highly dynamic structures that retract to promote DNA uptake","year":2021,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"National Institutes of Health; National Science Foundation","keywords":"Pilus; Biology; Streptococcus pneumoniae; Microbiology; DNA; Bacterial protein; Genetics; Gene; Bacteria; Escherichia coli","score_opus":0.01012537261519324,"score_gpt":0.25877629380899375,"score_spread":0.2486509211938005,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3137902539","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937925,0.00050462777,0.00017564256,0.003981733,0.00040802467,0.0005642389,0.00007502745,0.00008569727,0.00041251603],"genre_scores_gemma":[0.9943311,0.000032302585,0.00028056878,0.004915682,0.00002959148,0.00004539646,0.000116694035,0.000035795183,0.00021287397],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99828976,0.00014985725,0.0003433309,0.0006379649,0.00008146681,0.00049759966],"domain_scores_gemma":[0.99900746,0.000026007734,0.00010358273,0.00057239516,0.00011966756,0.00017085871],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00010058066,0.00027611633,0.0005036824,0.00019449161,0.00008429369,0.000022127871,0.0001558569,0.00029094637,0.00009163859],"category_scores_gemma":[0.0001046745,0.00024793978,0.00016294225,0.00045118036,0.0001163777,0.000032417105,0.00011906862,0.00048861635,0.000091219525],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013466544,0.00012908387,0.018252315,0.000046667596,0.000057320416,0.0022021062,0.000078474026,0.000045729223,0.97809976,0.000045587967,0.0001610806,0.00086838345],"study_design_scores_gemma":[0.0011546612,0.00037765916,0.22414097,0.00019761453,0.00007356915,0.0021286905,0.00011072514,0.000018532784,0.6700519,0.000104569146,0.10124966,0.00039145196],"about_ca_topic_score_codex":0.000010220382,"about_ca_topic_score_gemma":0.00018104866,"teacher_disagreement_score":0.3080479,"about_ca_system_score_codex":0.00014279781,"about_ca_system_score_gemma":0.00018436162,"threshold_uncertainty_score":0.99999726},"labels":[],"label_agreement":null},{"id":"W3138135377","doi":"10.1101/2021.03.15.21253639","title":"Long-term sequelae of Pneumococcal Sepsis in children: a systematic review","year":2021,"lang":"en","type":"review","venue":"medRxiv","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Clinical Evaluative Sciences; Public Health Ontario; University of Toronto; University Health Network","funders":"","keywords":"Medicine; Systematic review; Sepsis; Pediatrics; Population; Disease; Meningitis; Septic shock; MEDLINE; Intensive care medicine; Internal medicine","score_opus":0.038859043364036165,"score_gpt":0.3566502606404451,"score_spread":0.3177912172764089,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3138135377","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0015839756,0.9939303,0.0000028965098,0.000064379434,0.00016391712,0.0039792485,0.000027148373,0.000044338147,0.00020383812],"genre_scores_gemma":[0.00015514684,0.99846315,0.000004212082,0.00024224682,0.00009343319,0.0006286878,0.000114523995,0.00006765636,0.0002309252],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.9963202,0.0007087034,0.0018300642,0.0004785724,0.0003561038,0.00030635024],"domain_scores_gemma":[0.997798,0.00017450431,0.00068667997,0.0010460583,0.000120566256,0.00017415328],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006720789,0.0004821875,0.0061447877,0.0004064638,0.000035299385,0.000011691397,0.00023735077,0.00035809612,0.00018699047],"category_scores_gemma":[0.00063604594,0.00032926394,0.0013687398,0.0011565487,0.00007927995,0.00003867066,0.00009148733,0.0007099044,0.00012934323],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[3.2340517e-7,0.00017669256,0.01639061,0.9758967,0.00055106997,0.00021707911,0.000009457648,2.848198e-8,0.000010383627,0.000007970179,0.000022736269,0.0067169145],"study_design_scores_gemma":[0.00018583832,0.00007032004,0.0044588353,0.97072136,0.00840602,0.0021669888,0.0000020842194,1.4365452e-7,0.0000020041455,4.5628155e-7,0.013722151,0.00026378696],"about_ca_topic_score_codex":0.0000045984016,"about_ca_topic_score_gemma":0.000008238689,"teacher_disagreement_score":0.013699414,"about_ca_system_score_codex":0.00016203384,"about_ca_system_score_gemma":0.00058348407,"threshold_uncertainty_score":0.99991596},"labels":[],"label_agreement":null},{"id":"W3138422582","doi":"10.22541/au.161518225.52315605/v1","title":"Laboratory abnormalities in children with refractory mycoplasma pneumoniae pneumonia: a systematic review and meta-analysis","year":2021,"lang":"en","type":"review","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Procalcitonin; Ferritin; Erythrocyte sedimentation rate; Gastroenterology; Internal medicine; Lactate dehydrogenase; Medicine; Immunology; Biology; Enzyme; Biochemistry; Sepsis","score_opus":0.040503282587317085,"score_gpt":0.3253833094554105,"score_spread":0.28488002686809344,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3138422582","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000026031368,0.9944799,0.000003927392,0.00023956146,0.000022669257,0.0043131663,0.00026448493,0.000119521465,0.0005307676],"genre_scores_gemma":[0.000043099397,0.9929482,0.000029837965,0.0015809761,0.000031197185,0.0020026246,0.00020288547,0.00010202772,0.0030592026],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9946514,0.0013033935,0.0019887483,0.0009937218,0.0005662765,0.0004964803],"domain_scores_gemma":[0.9966286,0.00034408856,0.0008869902,0.001484791,0.00031434654,0.00034118618],"candidate_categories":["metaepi_narrow","metaepi_broad"],"consensus_categories":[],"category_scores_codex":[0.0009987102,0.0010603974,0.017988011,0.0011928596,0.00012881708,0.00009307912,0.00021515174,0.00048459027,0.0004754558],"category_scores_gemma":[0.00021429823,0.0005863609,0.0027163918,0.0034101976,0.00015804773,0.00018683511,0.000116963485,0.0010975081,0.00005928617],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[5.452081e-7,0.00014895338,0.00038837316,0.7343856,0.26466042,0.00016344387,0.000023682001,3.8108843e-7,3.0855975e-7,0.000044432323,0.000062938394,0.00012090189],"study_design_scores_gemma":[0.00014924242,0.00012316306,0.000044060802,0.06952672,0.86574554,0.002875054,0.00003310494,3.0605386e-7,1.2607188e-7,3.7942274e-7,0.06095454,0.0005477676],"about_ca_topic_score_codex":0.000055487424,"about_ca_topic_score_gemma":0.00019237942,"teacher_disagreement_score":0.6648589,"about_ca_system_score_codex":0.00021957772,"about_ca_system_score_gemma":0.00096829154,"threshold_uncertainty_score":0.99965876},"labels":[],"label_agreement":null},{"id":"W3139580670","doi":"10.1016/j.vaccine.2021.02.069","title":"Invasive pneumococcal disease in Canada 2010–2017: The role of current and next-generation higher-valent pneumococcal conjugate vaccines","year":2021,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer","keywords":"Pneumococcal disease; Pneumococcal conjugate vaccine; Medicine; Serotype; Herd immunity; Pneumococcal polysaccharide vaccine; Population; Pediatrics; Streptococcus pneumoniae; Pneumococcal infections; Vaccination; Immunology; Environmental health; Antibiotics; Biology","score_opus":0.034673623485973054,"score_gpt":0.264385116047032,"score_spread":0.22971149256105897,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3139580670","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9851631,0.0054075625,0.0000023188886,0.00809123,0.0007850678,0.00039869823,0.000037584337,0.000015523687,0.000098921555],"genre_scores_gemma":[0.9978464,0.0010868837,0.0000030953267,0.00041434335,0.00035429973,0.00006188547,0.000058164842,0.000017196466,0.00015771901],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987005,0.00010633329,0.00042190278,0.0003098211,0.00021191344,0.00024952836],"domain_scores_gemma":[0.9989763,0.00009723819,0.00011659444,0.0003641645,0.00018928939,0.0002564113],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000097866614,0.00019290525,0.00034170182,0.00008614071,0.00010907029,0.00002123293,0.00007732875,0.00004700876,0.00012953667],"category_scores_gemma":[0.00013687827,0.00013374849,0.000070792354,0.00028023633,0.000015160515,0.00009984793,0.00008284464,0.00026669985,0.000006088512],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005453012,0.00016818826,0.51018786,0.00009913598,0.000038738868,0.00009727223,0.00007999144,0.00009445833,0.4863317,0.00015249418,0.0006369776,0.002058622],"study_design_scores_gemma":[0.0013108506,0.00007714005,0.95312893,0.00012676427,0.00013222123,0.000048883056,0.000117843374,0.00065079995,0.02064188,0.000077782766,0.023541087,0.00014580924],"about_ca_topic_score_codex":0.03844463,"about_ca_topic_score_gemma":0.3280931,"teacher_disagreement_score":0.46568984,"about_ca_system_score_codex":0.0001596879,"about_ca_system_score_gemma":0.0016342321,"threshold_uncertainty_score":0.96795845},"labels":[],"label_agreement":null},{"id":"W3140047415","doi":"10.3390/microorganisms9040742","title":"Global Landscape Review of Serotype-Specific Invasive Pneumococcal Disease Surveillance among Countries Using PCV10/13: The Pneumococcal Serotype Replacement and Distribution Estimation (PSERENADE) Project","year":2021,"lang":"en","type":"article","venue":"Microorganisms","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University of Calgary; University Health Network; Alberta Health Services; Université Laval","funders":"National Center for Advancing Translational Sciences; Pan American Health Organization; European Centre for Disease Prevention and Control; Bill and Melinda Gates Foundation; Johns Hopkins University; World Health Organization","keywords":"Pneumococcal disease; Serotype; Estimation; Schedule; Medicine; Disease surveillance; Environmental health; Geography; Disease; Biology; Streptococcus pneumoniae; Virology; Computer science; Internal medicine","score_opus":0.015391497080034816,"score_gpt":0.2763743936251942,"score_spread":0.2609828965451594,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3140047415","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9868909,0.008726013,0.00074393087,0.0018731027,0.00020443776,0.0010812503,0.0003396169,0.00005756587,0.00008318175],"genre_scores_gemma":[0.9930738,0.005681401,0.00007221749,0.00046928154,0.00010359689,0.000037861635,0.00047765556,0.000022410979,0.000061771745],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983405,0.00021197888,0.00048103544,0.00040221048,0.00029272368,0.0002715737],"domain_scores_gemma":[0.9986588,0.00008954071,0.00023337116,0.0004589401,0.00041393912,0.00014545194],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033756462,0.00024071796,0.00042382334,0.00003242426,0.00028359273,0.00005837847,0.000089470486,0.00010002535,0.00011977187],"category_scores_gemma":[0.00028234965,0.00017743299,0.00010758007,0.0005486677,0.00022789065,0.00011883788,0.000107817665,0.00017634434,0.000012919512],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019591504,0.0002362503,0.8371639,0.004318007,0.00014728378,0.00010295704,0.00016496207,0.00006449404,0.15538245,0.00023572128,0.0015922178,0.00039581652],"study_design_scores_gemma":[0.0010593473,0.00020595713,0.970651,0.0034336052,0.0002965417,0.00042057908,0.00018978062,0.0003131031,0.01366158,0.00005465449,0.009412261,0.00030160646],"about_ca_topic_score_codex":0.00004325886,"about_ca_topic_score_gemma":0.00012808043,"teacher_disagreement_score":0.14172088,"about_ca_system_score_codex":0.00019263658,"about_ca_system_score_gemma":0.0006773511,"threshold_uncertainty_score":0.72355074},"labels":[],"label_agreement":null},{"id":"W3141014958","doi":"10.1002/14651858.cd007720.pub3","title":"Corticosteroids for pneumonia","year":2017,"lang":"en","type":"review","venue":"Cochrane Database of Systematic Reviews","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":272,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"McMaster University; American Thoracic Society","keywords":"Pneumonia; Medicine; Intensive care medicine; Microbiology; Internal medicine; Biology","score_opus":0.3001347016191569,"score_gpt":0.47116989475503074,"score_spread":0.17103519313587384,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3141014958","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[3.9945866e-7,0.9755852,0.00035270315,0.000025074774,0.00076667446,0.02169074,0.0010022651,0.00004013449,0.00053679],"genre_scores_gemma":[6.142007e-7,0.991097,0.00026753056,0.00006113536,0.00030643557,0.0058956863,0.0010550328,0.00009811266,0.0012185046],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.9937456,0.0005897495,0.0042740153,0.0005988687,0.00042372063,0.00036801226],"domain_scores_gemma":[0.98976684,0.0008541577,0.0047412342,0.0040418906,0.0003209437,0.00027490925],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0027074048,0.00074411754,0.012973316,0.00034311862,0.00020390791,0.000057066503,0.00062679406,0.00032071822,0.000060392496],"category_scores_gemma":[0.006153363,0.00043789507,0.0026623993,0.00019622572,0.00015226714,0.00013513151,0.00012482064,0.00034969125,0.0005081774],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000031324876,0.000112028756,0.0000010733156,0.93089694,0.00034103048,0.000024855712,0.0000118128955,4.6229047e-9,0.00005390093,0.00005354786,0.0013062814,0.06719539],"study_design_scores_gemma":[0.0002252405,0.00010520368,4.0731254e-7,0.49630916,0.0077974787,0.0005323523,0.0000030578753,0.0000017834766,9.85921e-7,0.0000010680096,0.4948419,0.00018136877],"about_ca_topic_score_codex":0.0000037713016,"about_ca_topic_score_gemma":0.000002963932,"teacher_disagreement_score":0.49353564,"about_ca_system_score_codex":0.000107625165,"about_ca_system_score_gemma":0.00047959376,"threshold_uncertainty_score":0.9998073},"labels":[],"label_agreement":null},{"id":"W3141564469","doi":"10.3390/microorganisms9040696","title":"Changes in Invasive Pneumococcal Disease Caused by Streptococcus pneumoniae Serotype 1 following Introduction of PCV10 and PCV13: Findings from the PSERENADE Project","year":2021,"lang":"en","type":"article","venue":"Microorganisms","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University of Calgary; University Health Network; Alberta Health Services; Université Laval","funders":"National Center for Advancing Translational Sciences; Pan American Health Organization; European Centre for Disease Prevention and Control; Bill and Melinda Gates Foundation; Johns Hopkins University; World Health Organization","keywords":"Streptococcus pneumoniae; Serotype; Pneumococcal disease; Poisson regression; Medicine; Incidence (geometry); Pneumococcal conjugate vaccine; Pneumococcal infections; Pediatrics; Demography; Environmental health; Immunology; Antibiotics; Biology; Microbiology; Mathematics; Population","score_opus":0.012060976731931487,"score_gpt":0.24961454082364107,"score_spread":0.23755356409170958,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3141564469","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98717606,0.00046558896,0.000007935687,0.011256462,0.00025808666,0.0006515778,0.00012139512,0.000043398693,0.000019512228],"genre_scores_gemma":[0.99848187,0.00013378228,0.000015874479,0.0006099923,0.00024664134,0.000062270985,0.00017833251,0.00003499269,0.00023627217],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987018,0.00012502607,0.00027985015,0.00044507583,0.00018067067,0.0002675876],"domain_scores_gemma":[0.99924535,0.00010913204,0.00008394763,0.00036282284,0.00007904829,0.00011967781],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013200702,0.00020953521,0.0003474687,0.00009761067,0.00014502073,0.000039642815,0.00008918051,0.00012111677,0.00009784366],"category_scores_gemma":[0.00028969694,0.0001608574,0.00008896049,0.00046141495,0.000102678045,0.00008537419,0.0000962033,0.0003199386,0.000010347974],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000149260195,0.00011817396,0.26668784,0.000041955293,0.000056948084,0.00007481381,0.0008708875,7.0981736e-7,0.7311849,0.000006608304,0.0007755757,0.00016664351],"study_design_scores_gemma":[0.0009967628,0.00012866166,0.43257618,0.00012546984,0.00017982812,0.000013857748,0.0009443148,0.0000034845036,0.56008863,0.000049359933,0.004740028,0.00015340543],"about_ca_topic_score_codex":0.00014699974,"about_ca_topic_score_gemma":0.00148488,"teacher_disagreement_score":0.17109627,"about_ca_system_score_codex":0.00009026331,"about_ca_system_score_gemma":0.0003444472,"threshold_uncertainty_score":0.6559574},"labels":[],"label_agreement":null},{"id":"W3147330493","doi":"10.1002/pbc.28944","title":"Pneumococcal vaccination during chemotherapy in children treated for acute lymphoblastic leukemia","year":2021,"lang":"en","type":"article","venue":"Pediatric Blood & Cancer","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Medicine; Chemotherapy; Pediatrics; Booster dose; Vaccination; Pneumococcal conjugate vaccine; Internal medicine; Booster (rocketry); Streptococcus pneumoniae; Immunization; Immunology; Antibody; Antibiotics","score_opus":0.006671459079874452,"score_gpt":0.27411353522074167,"score_spread":0.26744207614086724,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3147330493","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997723,0.000856292,0.000028297483,0.00045202128,0.00015074197,0.0005101597,0.00004161856,0.00008427328,0.00015361122],"genre_scores_gemma":[0.99522996,0.0022957874,0.00003295097,0.00030756387,0.0011650327,0.00034006985,0.000035105248,0.000038079288,0.00055543514],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989473,0.000022439113,0.00026317063,0.0003308123,0.00013571675,0.00030052275],"domain_scores_gemma":[0.99946976,0.000040451432,0.00007752283,0.00017751743,0.000126751,0.00010797188],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004980919,0.00016543207,0.0002850971,0.0002025516,0.00009786942,0.000017756285,0.000049942442,0.00013217988,0.0001740376],"category_scores_gemma":[0.000038749193,0.00015379359,0.0001265668,0.00065123505,0.000009074544,0.000073323514,0.000016630771,0.0001466737,0.000009049654],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000080011414,0.00025908306,0.9342361,0.000101215934,0.00025598114,0.0000341574,0.000057712714,0.00009337899,0.0639788,0.000008010396,0.00008366749,0.00081185583],"study_design_scores_gemma":[0.008006705,0.000117626725,0.9672329,0.000024927022,0.0010904598,0.00018844855,0.000006878777,0.00010542081,0.022879306,0.000015980582,0.00016538767,0.0001659617],"about_ca_topic_score_codex":0.00006076988,"about_ca_topic_score_gemma":0.000046519977,"teacher_disagreement_score":0.041099492,"about_ca_system_score_codex":0.00029948325,"about_ca_system_score_gemma":0.00055791385,"threshold_uncertainty_score":0.627152},"labels":[],"label_agreement":null},{"id":"W3150298826","doi":"10.4021/jmc511w","title":"Hemophilus Parainfluenzae Pneumonia With Huge IVC Thrombosis and Pulmonary Embolism in a Young Immunocompetent Male","year":2012,"lang":"en","type":"article","venue":"Journal of Medical Cases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Pulmonary embolism; Pneumonia; Thrombosis; Deep vein; Radiology; Internal medicine","score_opus":0.030456592166724618,"score_gpt":0.3142328067707137,"score_spread":0.28377621460398905,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3150298826","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99045974,0.002489016,0.0000137409625,0.005899205,0.0003043013,0.00013488837,0.0000030001863,0.000011421161,0.0006846993],"genre_scores_gemma":[0.9968364,0.0010607871,0.00006543079,0.0013652928,0.00060677156,0.00000772622,0.0000010014627,0.000017598635,0.00003899058],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998107,0.00008837362,0.0005130137,0.00010908394,0.0008430449,0.00033948847],"domain_scores_gemma":[0.99875635,0.00018168006,0.00019820503,0.00013924259,0.00009124632,0.00063329964],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006899752,0.0001611926,0.00048336014,0.00023135108,0.00008291387,0.000017392273,0.000094779716,0.00015839835,0.00020905478],"category_scores_gemma":[0.0002751203,0.00010092352,0.00010551516,0.0002070511,0.00020264444,0.00017786665,0.000049029888,0.00065498654,0.000007457774],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016640303,0.0009195876,0.978544,0.00011677924,0.00013913408,0.004273571,0.00052269193,0.0000019316058,0.011190808,0.00009585695,0.00018585885,0.0038433718],"study_design_scores_gemma":[0.0015532674,0.00067873346,0.8917013,0.0006323186,0.00015921924,0.09518256,0.0004884468,0.000023990162,0.00012484846,0.000017609646,0.009315911,0.0001217925],"about_ca_topic_score_codex":0.000075068376,"about_ca_topic_score_gemma":0.000036217538,"teacher_disagreement_score":0.09090899,"about_ca_system_score_codex":0.00007737422,"about_ca_system_score_gemma":0.00023651675,"threshold_uncertainty_score":0.4115542},"labels":[],"label_agreement":null},{"id":"W3150530058","doi":"10.3390/microorganisms9040738","title":"Serotype Distribution of Remaining Pneumococcal Meningitis in the Mature PCV10/13 Period: Findings from the PSERENADE Project","year":2021,"lang":"en","type":"article","venue":"Microorganisms","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Toronto; University Health Network; Université Laval","funders":"National Center for Advancing Translational Sciences; Pan American Health Organization; European Centre for Disease Prevention and Control; Bill and Melinda Gates Foundation; Johns Hopkins University; World Health Organization","keywords":"Serotype; Meningitis; Medicine; Streptococcus pneumoniae; Pediatrics; Incidence (geometry); Pneumococcal conjugate vaccine; Virology; Biology; Microbiology; Antibiotics; Mathematics","score_opus":0.016200928963095305,"score_gpt":0.2638156065727476,"score_spread":0.2476146776096523,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3150530058","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9917602,0.00022390673,0.000067716144,0.006956333,0.00016285444,0.0003209577,0.00012629392,0.00003195808,0.00034978628],"genre_scores_gemma":[0.9986691,0.000026435255,0.00006630812,0.0006162727,0.00014530172,0.00002137683,0.0002664583,0.000018883462,0.00016987527],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99891436,0.0001552142,0.0002686764,0.00023614496,0.00019587956,0.00022970325],"domain_scores_gemma":[0.9993224,0.00012579029,0.00007078245,0.00036003345,0.000087912005,0.00003308068],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024015269,0.00014490171,0.00023714085,0.00003249487,0.0002105781,0.000050573275,0.00015273811,0.0001525734,0.00013703805],"category_scores_gemma":[0.00018524198,0.00008526333,0.0001010162,0.0005449606,0.00009562632,0.000050511488,0.00006177116,0.0004903829,0.000023374545],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018718036,0.0000829714,0.045046825,0.000021767044,0.000039028135,0.00011500558,0.004774628,0.0000016128805,0.94826186,0.00012684628,0.0013406026,0.0001701252],"study_design_scores_gemma":[0.0009115655,0.00015659806,0.6566908,0.00027116298,0.00013605354,0.00072655536,0.006188339,0.000012362604,0.30474097,0.00013303454,0.029872842,0.00015972843],"about_ca_topic_score_codex":0.00016366047,"about_ca_topic_score_gemma":0.00026344854,"teacher_disagreement_score":0.6435209,"about_ca_system_score_codex":0.00007346343,"about_ca_system_score_gemma":0.00024923208,"threshold_uncertainty_score":0.34769377},"labels":[],"label_agreement":null},{"id":"W3152431739","doi":"10.1016/s0140-6736(21)00627-9","title":"How low can we go in community-acquired pneumonia therapy?","year":2021,"lang":"en","type":"article","venue":"The Lancet","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Guideline; Community-acquired pneumonia; Pneumonia; Antibiotic therapy; Intensive care medicine; Superinfection; Internal medicine; Antibiotics; Immunology; Pathology","score_opus":0.05196217838465084,"score_gpt":0.29760887253239876,"score_spread":0.24564669414774792,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3152431739","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.86597276,0.0005511649,0.000005304202,0.12968044,0.00016959419,0.00013056262,0.000014018993,0.00006149879,0.0034146637],"genre_scores_gemma":[0.9887947,0.00094958936,0.0000133480435,0.007580251,0.00040382813,0.000025107596,0.000012940677,0.000015176103,0.0022050536],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991411,0.00032282533,0.00010312267,0.00009381761,0.000110603876,0.00022854152],"domain_scores_gemma":[0.99906176,0.00009825352,0.000033610915,0.0007084919,0.000044666856,0.00005319989],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022335061,0.000098300334,0.00030462234,0.000037952177,0.00017969272,0.00004298845,0.00015335855,0.00005855701,0.000046462304],"category_scores_gemma":[0.00007258092,0.00006209809,0.000060067203,0.0002854725,0.0000870957,0.000033000902,0.00004627222,0.0003943869,0.000023870547],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010452289,0.00054409466,0.12271794,0.00013851383,0.00013032799,0.00026161663,0.0047139158,0.000018650968,0.8493709,0.00049361464,0.005817258,0.015688652],"study_design_scores_gemma":[0.0041911784,0.000256632,0.4567619,0.00031303527,0.000035735735,0.00030656022,0.0019188249,0.000071774244,0.022718942,0.0011487865,0.5120511,0.00022552376],"about_ca_topic_score_codex":0.000073887706,"about_ca_topic_score_gemma":0.0008228524,"teacher_disagreement_score":0.82665193,"about_ca_system_score_codex":0.000043137687,"about_ca_system_score_gemma":0.00009969147,"threshold_uncertainty_score":0.2532287},"labels":[],"label_agreement":null},{"id":"W3157758209","doi":"10.1164/rccm.202102-0498st","title":"Nucleic Acid–based Testing for Noninfluenza Viral Pathogens in Adults with Suspected Community-acquired Pneumonia. An Official American Thoracic Society Clinical Practice Guideline","year":2021,"lang":"en","type":"review","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Center for Advancing Translational Sciences; National Institute of Allergy and Infectious Diseases; National Heart, Lung, and Blood Institute","keywords":"Medicine; Intensive care medicine; Guideline; Community-acquired pneumonia; Pneumonia; Nucleic Acid Amplification Tests; Immunology; Pathology; Internal medicine","score_opus":0.09146923528800771,"score_gpt":0.4614739385151365,"score_spread":0.3700047032271288,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3157758209","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.05978085,0.933755,0.0019127058,0.0019830703,0.0005286111,0.0015745852,0.00019222862,0.000113025366,0.0001599163],"genre_scores_gemma":[0.16986698,0.6444141,0.08691251,0.08130699,0.015153401,0.00046435528,0.0006960912,0.0011748462,0.000010717045],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99038815,0.0038075552,0.0034673333,0.0006989639,0.00089129736,0.00074670184],"domain_scores_gemma":[0.9855445,0.0063418266,0.0021156284,0.00078571506,0.004105162,0.0011071844],"candidate_categories":["metaresearch","metaepi_narrow","sts","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0037564079,0.0008371721,0.005263863,0.0005161309,0.000509857,0.000059055186,0.00037593514,0.00035363503,0.000017735465],"category_scores_gemma":[0.014041721,0.0005816625,0.0008551015,0.0018551083,0.0041098497,0.0002678794,0.000090702066,0.0030388087,0.0000010626],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011967887,0.0009797178,0.002404701,0.005738354,0.0003680851,0.001595826,0.0008729033,0.000003979377,0.00022919069,0.000020918998,0.00011107304,0.98647845],"study_design_scores_gemma":[0.004845698,0.08309518,0.0016806884,0.04117968,0.008252836,0.003301177,0.034709547,0.000072775525,0.0000069260864,0.000004562099,0.8219155,0.0009354358],"about_ca_topic_score_codex":0.00009608771,"about_ca_topic_score_gemma":0.000088144334,"teacher_disagreement_score":0.985543,"about_ca_system_score_codex":0.00034095417,"about_ca_system_score_gemma":0.0033891168,"threshold_uncertainty_score":0.9996635},"labels":[],"label_agreement":null},{"id":"W3159718387","doi":"10.1016/j.compbiomed.2021.104429","title":"The incremental burden of invasive pneumococcal disease associated with a decline in childhood vaccination using a dynamic transmission model in Japan: A secondary impact of COVID-19","year":2021,"lang":"en","type":"article","venue":"Computers in Biology and Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Vaccination; Medicine; Incidence (geometry); Transmission (telecommunications); Pneumococcal conjugate vaccine; Pediatrics; Pandemic; Pneumococcal infections; Coronavirus disease 2019 (COVID-19); Disease; Immunology; Streptococcus pneumoniae; Infectious disease (medical specialty); Internal medicine; Biology","score_opus":0.018006817303184014,"score_gpt":0.34471747138922704,"score_spread":0.32671065408604305,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3159718387","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947437,0.0008377981,0.0014002004,0.0026350948,0.000036944137,0.00031062806,0.000013055316,0.000005966325,0.000016627371],"genre_scores_gemma":[0.9990402,0.0004029929,0.000080614474,0.0003672901,0.000015016976,0.000007524086,0.000078401354,0.0000057596794,0.0000022218026],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990392,0.00018511308,0.0003672289,0.00018547323,0.00007396324,0.000149024],"domain_scores_gemma":[0.9992323,0.00035857165,0.00012351577,0.00010432118,0.00005281566,0.00012846713],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035641558,0.0001117449,0.00037573875,0.0002550513,0.000047029393,0.0000013715268,0.00005008703,0.00009826266,0.0000089681835],"category_scores_gemma":[0.00036968556,0.00006688269,0.000040728093,0.00037857995,0.00018426846,0.000030415742,0.00003945244,0.00024128317,2.5977277e-8],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006921383,0.00052283844,0.8069891,0.0001689836,0.00012877368,0.00012292207,0.0038705876,0.008918788,0.17324132,0.000062642306,0.0000050157682,0.005276898],"study_design_scores_gemma":[0.0073507978,0.0007712762,0.87867737,0.00082032627,0.000055341952,0.00006434272,0.00041731604,0.110986754,0.00008317613,0.0007018765,0.000004649124,0.000066788176],"about_ca_topic_score_codex":0.00020719608,"about_ca_topic_score_gemma":0.0007361034,"teacher_disagreement_score":0.17315814,"about_ca_system_score_codex":0.00020809281,"about_ca_system_score_gemma":0.00096835656,"threshold_uncertainty_score":0.2727397},"labels":[],"label_agreement":null},{"id":"W3161895414","doi":"10.1111/ped.14524","title":"Cerebral infarction associated with <i>Mycoplasma pneumoniae</i> infection in a child","year":2021,"lang":"en","type":"article","venue":"Pediatrics International","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen Elizabeth II Health Sciences Centre","funders":"","keywords":"Medicine; Mycoplasma pneumoniae; Content (measure theory); Cerebral infarction; Intensive care medicine; Internal medicine; Pneumonia","score_opus":0.009721870870169206,"score_gpt":0.2528315813421455,"score_spread":0.2431097104719763,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3161895414","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9753255,0.000029847042,0.00018690313,0.0034616576,0.000995179,0.00013181314,0.000029292212,0.00010068092,0.019739082],"genre_scores_gemma":[0.9973168,0.0002043782,0.000042278396,0.00083242275,0.0005590884,0.000034074827,0.00022621345,0.000020076475,0.00076466723],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99883777,0.000047141497,0.00026315285,0.00026112964,0.000400583,0.00019020405],"domain_scores_gemma":[0.9992562,0.000072756666,0.00010766353,0.00013020089,0.00034447602,0.000088731904],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013967227,0.00012996963,0.00016208734,0.00035902328,0.00009167845,0.000042052357,0.000047343096,0.00013002145,0.00021617136],"category_scores_gemma":[0.00044753044,0.000120669654,0.000081950886,0.00073759805,0.000029839353,0.00017507827,0.00003864385,0.00042516075,0.00004405383],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025618308,0.00043757213,0.9973376,0.000013071622,0.00006280631,0.0001355079,0.000066738285,0.00025612887,0.0006314555,0.00033827833,0.00036996673,0.00032525198],"study_design_scores_gemma":[0.002233163,0.0001588457,0.9787647,0.000075297685,0.00008893264,0.0020617978,0.000023423176,0.0006887842,0.00024862852,0.00011235763,0.015364273,0.00017975626],"about_ca_topic_score_codex":0.000063233965,"about_ca_topic_score_gemma":0.0008092293,"teacher_disagreement_score":0.021991255,"about_ca_system_score_codex":0.00032449537,"about_ca_system_score_gemma":0.0002284534,"threshold_uncertainty_score":0.49207658},"labels":[],"label_agreement":null},{"id":"W3162003009","doi":"10.1093/jac/dkab167","title":"Impact of the 13-valent pneumococcal conjugate vaccine on acute otitis media and acute sinusitis epidemiology in British Columbia, Canada","year":2021,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"Pfizer","keywords":"Medicine; Rate ratio; Pneumococcal conjugate vaccine; Incidence (geometry); Sinusitis; Poisson regression; Streptococcus pneumoniae; Population; Epidemiology; Pneumococcal infections; Otitis; Pediatrics; Cohort; Internal medicine; Antibiotics; Surgery; Environmental health","score_opus":0.009380224825270657,"score_gpt":0.26913259559232944,"score_spread":0.25975237076705876,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3162003009","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98835933,0.00012727412,0.000004322408,0.010589839,0.0005737271,0.00015194413,0.00013524503,0.0000041777967,0.000054136504],"genre_scores_gemma":[0.99077713,0.0025581873,0.000048602957,0.006239262,0.00020834354,8.5856595e-7,0.0000057352304,0.000022950639,0.00013892149],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998453,0.00018233682,0.0007421997,0.00017824223,0.00016326153,0.00028092548],"domain_scores_gemma":[0.9987315,0.00020370669,0.0004435985,0.00018783192,0.0002637527,0.00016964406],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002731801,0.0001372774,0.0008175207,0.00006463576,0.0000812531,0.000025862104,0.00010854441,0.00013737638,0.00016764647],"category_scores_gemma":[0.00016158854,0.00012817788,0.00031919856,0.00026061607,0.00010283494,0.00005737848,0.00002904102,0.00050766306,4.8560725e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001224303,0.00022824906,0.58752674,0.00002277099,0.00060397113,0.0011832275,0.00007425015,0.00002357026,0.39531305,8.5672144e-7,0.0136058675,0.0012950463],"study_design_scores_gemma":[0.00402244,0.0005205649,0.96752363,0.00044158124,0.00015214918,0.013038006,0.000014659892,0.000008150649,0.012843842,0.000027345945,0.001292117,0.00011552617],"about_ca_topic_score_codex":0.12233718,"about_ca_topic_score_gemma":0.63000405,"teacher_disagreement_score":0.5076668,"about_ca_system_score_codex":0.00025839877,"about_ca_system_score_gemma":0.0014035457,"threshold_uncertainty_score":0.88350725},"labels":[],"label_agreement":null},{"id":"W3165608280","doi":"10.1186/s12879-021-06235-z","title":"Assessment of nasopharyngeal Streptococcus pneumoniae colonization does not permit discrimination between Canadian children with viral and bacterial respiratory infection: a matched-cohort cross-sectional study","year":2021,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"St. Joseph’s Healthcare Hamilton; McMaster University","funders":"McMaster University; Hamilton Health Sciences","keywords":"Medicine; Streptococcus pneumoniae; Pneumonia; Bronchiolitis; Internal medicine; Viral pneumonia; Respiratory tract infections; Immunology; Respiratory disease; Cohort; Carriage; Pneumococcal conjugate vaccine; Medical microbiology; Logistic regression; Disease; Respiratory system; Biology; Lung; Pathology; Infectious disease (medical specialty); Coronavirus disease 2019 (COVID-19)","score_opus":0.016829284756404116,"score_gpt":0.3068994519716744,"score_spread":0.2900701672152703,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3165608280","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968942,0.000025179268,0.000082806786,0.000035181165,0.00039906692,0.0015997587,0.00050384493,0.00014693996,0.0003130645],"genre_scores_gemma":[0.998294,0.000012663018,0.000010895347,0.00010336267,0.0006753274,0.00032611436,0.000444714,0.00004678943,0.00008613648],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9977092,0.00026755856,0.0005669485,0.00062722294,0.0005001767,0.0003288766],"domain_scores_gemma":[0.9982193,0.00010157521,0.0002501003,0.00036805499,0.0006164775,0.0004444722],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00021916823,0.0003188998,0.0005049727,0.00038952366,0.0005962183,0.0001866664,0.00005689391,0.00017505261,0.00019350777],"category_scores_gemma":[0.00016200148,0.00026005408,0.0001442906,0.00041848831,0.00022039603,0.00036665608,0.00006194538,0.00027138792,0.000004667369],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003855928,0.00086604554,0.99488604,0.00012683247,0.00045424709,0.000029743647,0.000082660576,0.000111431815,0.0031557921,0.000062627325,0.000007343973,0.00017867368],"study_design_scores_gemma":[0.0030192963,0.0013192627,0.99368185,0.000046994253,0.00081532437,0.00007019219,0.00004944939,0.00002427768,0.0005847095,0.000017851895,0.00007929049,0.0002915186],"about_ca_topic_score_codex":0.005099298,"about_ca_topic_score_gemma":0.0525761,"teacher_disagreement_score":0.047476802,"about_ca_system_score_codex":0.00049545313,"about_ca_system_score_gemma":0.0021006379,"threshold_uncertainty_score":0.99998516},"labels":[],"label_agreement":null},{"id":"W3167103975","doi":"10.1016/j.diagmicrobio.2021.115447","title":"Invasive pneumococcal disease caused by serotypes 22F and 33F in Canada: the SAVE study 2011–2018","year":2021,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Sciences Centre; Public Health Agency of Canada; University of Manitoba","funders":"University of Manitoba","keywords":"Serotype; Streptococcus pneumoniae; Microbiology; Virology; Sulfamethoxazole; Antimicrobial; Multiple drug resistance; Pneumococcal disease; Clarithromycin; Biology; Medicine; Antibiotics","score_opus":0.006908771657666815,"score_gpt":0.21877355420565886,"score_spread":0.21186478254799204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3167103975","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99190444,0.0032142438,0.0000045113743,0.0032564846,0.00030108567,0.00096808735,0.0002354409,0.000026662849,0.00008901793],"genre_scores_gemma":[0.99483377,0.00087999494,2.6953893e-7,0.0037871166,0.000063695654,0.00020999176,0.00011203257,0.000015780646,0.00009736261],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985242,0.0004010342,0.00028027443,0.0004322243,0.000056439738,0.00030584118],"domain_scores_gemma":[0.9976681,0.0014618293,0.00006744574,0.00028421936,0.00008568035,0.00043272323],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013239941,0.0002273591,0.00038612098,0.000068318106,0.00025947313,0.000022718175,0.000048901347,0.00007067692,0.00013989177],"category_scores_gemma":[0.0017929429,0.00016072806,0.00005807202,0.00013588619,0.00037941767,0.00004915045,0.00009919439,0.00029214093,0.000016245953],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016405294,0.00060787104,0.98994094,0.00007287313,0.0001487877,0.0010441772,0.00015431874,0.000009986334,0.0050922576,0.00007981335,0.0025479924,0.00013694247],"study_design_scores_gemma":[0.0049299956,0.00016707338,0.9911622,0.00006504338,0.00045764731,0.000118217264,0.0003383611,0.000012076841,0.00017546357,0.00013716017,0.0022390422,0.00019774261],"about_ca_topic_score_codex":0.047521103,"about_ca_topic_score_gemma":0.41498232,"teacher_disagreement_score":0.3674612,"about_ca_system_score_codex":0.00014374802,"about_ca_system_score_gemma":0.0017771872,"threshold_uncertainty_score":0.95882154},"labels":[],"label_agreement":null},{"id":"W3168574149","doi":"10.1016/s0012-3692(15)34475-5","title":"Factors Influencing In-hospital Mortality in Community-Acquired Pneumonia","year":2005,"lang":"en","type":"article","venue":"CHEST Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Pfizer Canada; Bayer Canada; Fondation pour la Recherche Médicale; Pfizer; Abbott Canada; Bristol-Myers Squibb","keywords":"Medicine; Pneumonia; Chest radiograph; Community-acquired pneumonia; Pneumonia severity index; Observational study; Multivariate analysis; Internal medicine; Severity of illness; Pediatrics; Intensive care medicine; Lung","score_opus":0.04361758759980049,"score_gpt":0.31759032912682533,"score_spread":0.27397274152702483,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3168574149","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99717796,0.00007276813,0.000009142068,0.0010874503,0.00024197549,0.000116911426,0.0000017265502,0.000030386762,0.001261685],"genre_scores_gemma":[0.99924237,0.000040414903,0.000031004914,0.00038116623,0.00024070758,0.000004425841,0.0000025182737,0.000016710223,0.00004069435],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987627,0.00015174577,0.00046736567,0.00010160836,0.00020074891,0.00031578014],"domain_scores_gemma":[0.99931127,0.00006477802,0.000118831194,0.00023205004,0.000058285652,0.00021476636],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005046128,0.00015627561,0.00030095677,0.0002899116,0.00021627573,0.000040638562,0.00012583395,0.000120617384,0.00007604972],"category_scores_gemma":[0.00017994325,0.00012555212,0.00011007714,0.0003088418,0.000086656815,0.00027983874,0.000039375005,0.001144989,0.0000218017],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000056394265,0.0005102589,0.9634635,0.00003210976,0.000023014323,0.00008828103,0.003807105,0.00010887014,0.031170694,0.0000064436263,0.0000234039,0.0007607102],"study_design_scores_gemma":[0.0009395875,0.00021093969,0.99066657,0.00015942365,0.000022177883,0.0001464836,0.0017124384,0.00004448785,0.0014484633,0.000049923543,0.0044701113,0.0001293875],"about_ca_topic_score_codex":0.00011302942,"about_ca_topic_score_gemma":0.00054335454,"teacher_disagreement_score":0.02972223,"about_ca_system_score_codex":0.00041098718,"about_ca_system_score_gemma":0.00017747296,"threshold_uncertainty_score":0.5119867},"labels":[],"label_agreement":null},{"id":"W3170681045","doi":"10.2139/ssrn.3745169","title":"Impact and Effectiveness of 13-Valent Pneumococcal Conjugate Vaccine on Population Incidence of Vaccine and Non-Vaccine Serotype Invasive Pneumococcal Disease in Blantyre, Malawi, 2006-2018: Prospective Observational Time-Series and Case-Control Studies","year":2020,"lang":"en","type":"article","venue":"SSRN Electronic Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Wellcome Trust; National Institute for Health and Care Research; Bill and Melinda Gates Foundation","keywords":"Pneumococcal conjugate vaccine; Serotype; Pneumococcal disease; Incidence (geometry); Streptococcus pneumoniae; Medicine; Virology; Observational study; Population; Pneumococcal vaccine; Biology; Microbiology; Environmental health; Internal medicine; Mathematics","score_opus":0.014096799294493008,"score_gpt":0.28914328652583293,"score_spread":0.2750464872313399,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3170681045","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99473596,0.0028299796,0.0000459644,0.0011685233,0.000043360615,0.0010903503,0.00006557529,0.00001540463,0.000004896972],"genre_scores_gemma":[0.9970146,0.0026815503,0.000008889653,0.00008188428,0.00012567009,0.000035726534,0.0000138329815,0.000026874131,0.000011012777],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99788576,0.00025229144,0.00061135396,0.0003740733,0.00024290223,0.0006336129],"domain_scores_gemma":[0.9984703,0.00045175353,0.00035742193,0.00013308621,0.00031808112,0.00026936337],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00084651366,0.00031763525,0.0008465258,0.00023045504,0.0001581016,0.000017369033,0.000057715373,0.0000967373,0.0000080756245],"category_scores_gemma":[0.0006931959,0.00024031429,0.00009607598,0.00031768915,0.000072341405,0.00033766724,0.000060338516,0.0008220481,0.0000012423023],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0066701802,0.00017698026,0.9232959,0.00039757014,0.00057811785,0.00017416474,0.00020665325,0.00046405275,0.067585945,0.00027048762,0.0000029846865,0.00017692448],"study_design_scores_gemma":[0.006504592,0.0060084835,0.9801353,0.0005391497,0.00040301666,0.0018383833,0.00022015114,0.0005546262,0.00092609914,0.0026741964,0.0000014436825,0.00019452709],"about_ca_topic_score_codex":0.00013050126,"about_ca_topic_score_gemma":0.00063272123,"teacher_disagreement_score":0.066659845,"about_ca_system_score_codex":0.00038914286,"about_ca_system_score_gemma":0.00068852503,"threshold_uncertainty_score":0.97997326},"labels":[],"label_agreement":null},{"id":"W3173019425","doi":"10.21203/rs.2.13786/v1","title":"Antibiotic resistance of Streptococcus pneumonia serotypes in Kisii, Kenya","year":2019,"lang":"en","type":"preprint","venue":"Research Square","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"North York General Hospital","funders":"","keywords":"Serotype; Pneumonia; Antibiotic resistance; Antibiotics; Microbiology; Streptococcus pneumoniae; Medicine; Streptococcus; Virology; Biology; Bacteria; Internal medicine","score_opus":0.054823937323087026,"score_gpt":0.4011020466992534,"score_spread":0.3462781093761664,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3173019425","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9784063,0.0012262054,0.000010341066,0.0015785337,0.00032204486,0.00293252,0.0001366271,0.000069670976,0.015317735],"genre_scores_gemma":[0.9946494,0.0006288932,0.000042872285,0.000039510647,0.00016820013,0.000081477716,0.00005578384,0.000055995588,0.004277835],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9963347,0.00046888101,0.0006158323,0.0007315429,0.0011573825,0.0006916739],"domain_scores_gemma":[0.99708617,0.00034718335,0.00016929004,0.0014124606,0.00076521403,0.00021969478],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0012434244,0.00028942176,0.0008158232,0.0011568585,0.000091687405,0.000042791187,0.00035580577,0.0005915334,0.0001538231],"category_scores_gemma":[0.0006560744,0.00025259054,0.00026062602,0.000880155,0.0002944158,0.00005648051,0.00059356826,0.0025617091,0.00020669747],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022282732,0.00076995936,0.9050683,0.011154101,0.0001533946,0.00031808033,0.00043997745,0.000550128,0.07869262,0.00042939105,0.0014600975,0.00074111426],"study_design_scores_gemma":[0.0010945785,0.00051831646,0.9676647,0.008890645,0.000040539562,0.000007738131,0.00036793557,0.00016405755,0.007747085,0.00048200192,0.012723525,0.0002988459],"about_ca_topic_score_codex":0.00021971566,"about_ca_topic_score_gemma":0.00051283836,"teacher_disagreement_score":0.07094554,"about_ca_system_score_codex":0.00037474444,"about_ca_system_score_gemma":0.0014017718,"threshold_uncertainty_score":0.9999926},"labels":[],"label_agreement":null},{"id":"W3175139994","doi":"10.26443/mjm.v19i1.511","title":"Approach to Pneumonia in Immunocompetent Patients","year":2021,"lang":"en","type":"article","venue":"McGill Journal of Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"","keywords":"Medicine; Pneumonia; Intensive care medicine; Etiology; Community-acquired pneumonia; Bacterial pneumonia; Empiric therapy; Empiric treatment; Internal medicine; Antibiotics; Pathology; Alternative medicine","score_opus":0.026988423239817188,"score_gpt":0.28623871478569657,"score_spread":0.25925029154587936,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3175139994","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9600423,0.00035688034,0.00011549679,0.017192518,0.0009565212,0.00023199758,0.0000049084056,0.00001285327,0.021086533],"genre_scores_gemma":[0.98930234,0.00011825261,0.00037427264,0.009595765,0.00028081852,0.0000044775175,0.0000049744126,0.000016630229,0.00030246848],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984788,0.000078700185,0.0006446771,0.00013584236,0.00046082173,0.00020118926],"domain_scores_gemma":[0.99881417,0.000043704513,0.0001625802,0.00019072063,0.00050614885,0.0002826641],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036051034,0.00012287054,0.00048756567,0.00035933324,0.00006112026,0.0000033452864,0.00008664711,0.000061549224,0.000070165755],"category_scores_gemma":[0.00041571792,0.000083324776,0.00010322421,0.0005242988,0.000043631793,0.0000554782,0.000036093115,0.00038934677,0.000016048158],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003856604,0.004356644,0.21266724,0.00024263207,0.00037234765,0.002038195,0.0010361216,0.00031889457,0.73458666,0.00064043206,0.008707894,0.03464726],"study_design_scores_gemma":[0.0073689804,0.0017524051,0.6875741,0.00078153133,0.00013217879,0.0021691772,0.00041061634,0.000018780409,0.0016809643,0.000055365737,0.2979297,0.0001262105],"about_ca_topic_score_codex":0.000007956002,"about_ca_topic_score_gemma":0.0000028242184,"teacher_disagreement_score":0.73290575,"about_ca_system_score_codex":0.00015055317,"about_ca_system_score_gemma":0.00008825282,"threshold_uncertainty_score":0.3397886},"labels":[],"label_agreement":null},{"id":"W3175676175","doi":"10.3201/eid2707.204403","title":"Whole-Genome Analysis of <i>Streptococcus pneumoniae</i> Serotype 4 Causing Outbreak of Invasive Pneumococcal Disease, Alberta, Canada","year":2021,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Calgary Laboratory Services; Public Health Agency of Canada; University of Alberta; University of Calgary","funders":"Alberta Health Services","keywords":"Serotype; Streptococcus pneumoniae; Outbreak; Pneumonia; Lineage (genetic); Biology; Pneumococcal infections; Pneumococcal disease; Clade; Virology; Disease; Medicine; Phylogenetic tree; Microbiology; Genetics; Antibiotics; Gene; Internal medicine","score_opus":0.008512249669151742,"score_gpt":0.2468217281447363,"score_spread":0.23830947847558456,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3175676175","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99557877,0.0005460553,0.00004522782,0.0007276869,0.0003502166,0.00035130393,0.00075486687,0.0000705032,0.0015753454],"genre_scores_gemma":[0.99820215,0.00007895478,0.0000023118619,0.00050476944,0.00011531727,0.000057621208,0.00047818056,0.000042245552,0.00051848096],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9977175,0.00013640428,0.000718552,0.00051073416,0.0005022057,0.00041462053],"domain_scores_gemma":[0.99741477,0.00030753625,0.0003676028,0.0007049719,0.0006308993,0.0005742022],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00006271918,0.00032844782,0.00093376706,0.00048388226,0.0002120729,0.000020954714,0.000090804926,0.00008336803,0.00036900636],"category_scores_gemma":[0.0006387214,0.0003231454,0.0006283605,0.002259708,0.0001567701,0.00011575474,0.00011089115,0.00020612607,0.0000059440763],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023632836,0.0005466951,0.85960543,0.00036221519,0.0024825535,0.0002812053,0.00012185725,0.00730805,0.12898746,0.000044711058,0.000119875775,0.0001162869],"study_design_scores_gemma":[0.0007061712,0.000112342044,0.98186606,0.00018491429,0.007391316,0.000024262707,0.00019521182,0.00024983706,0.0025450026,0.000025811207,0.0063755377,0.0003235045],"about_ca_topic_score_codex":0.0739077,"about_ca_topic_score_gemma":0.3808723,"teacher_disagreement_score":0.3069646,"about_ca_system_score_codex":0.00025226249,"about_ca_system_score_gemma":0.0031680146,"threshold_uncertainty_score":0.99992204},"labels":[],"label_agreement":null},{"id":"W3175703064","doi":"10.1093/jpids/piab043","title":"Systematic Review and Meta-Analysis of Diagnostic Biomarkers for Pediatric Pneumonia","year":2021,"lang":"en","type":"review","venue":"Journal of the Pediatric Infectious Diseases Society","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Women and Children’s Health Research Institute; University of Alberta","funders":"","keywords":"Procalcitonin; Medicine; Erythrocyte sedimentation rate; Pneumonia; Internal medicine; Biomarker; White blood cell; C-reactive protein; Youden's J statistic; Meta-analysis; Bacterial pneumonia; Respiratory distress; Receiver operating characteristic; Gastroenterology; Immunology; Intensive care medicine; Sepsis; Surgery; Inflammation","score_opus":0.03608533573968211,"score_gpt":0.33993938487809416,"score_spread":0.3038540491384121,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3175703064","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000098274846,0.9957794,0.000057692145,0.00018232904,0.00035821312,0.0028843947,0.0006114661,0.000019897168,0.000008367344],"genre_scores_gemma":[0.00022495122,0.99830353,0.00001912915,0.00051115383,0.00046032717,0.00031808717,0.000022391285,0.000057702997,0.00008275087],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9954336,0.000709332,0.002597525,0.0003403948,0.0006168375,0.00030227605],"domain_scores_gemma":[0.9885729,0.0045547294,0.0048970133,0.00070060825,0.00095355517,0.0003212105],"candidate_categories":["metaepi_narrow","metaepi_broad"],"consensus_categories":[],"category_scores_codex":[0.0010734571,0.0005689948,0.010225035,0.0005437848,0.00024578124,0.00004473394,0.00029618095,0.000311613,0.000051544284],"category_scores_gemma":[0.0054320027,0.00029890807,0.025865432,0.003944051,0.00009525039,0.0000882662,0.00012961091,0.0005537451,0.0000014009262],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[9.624763e-7,0.00030959226,0.0036529596,0.72766244,0.26571128,0.000009661943,0.000019533854,0.00000638763,9.8113865e-8,0.000004384995,0.0025380347,0.000084654166],"study_design_scores_gemma":[0.00026888782,0.00015288674,0.00009698216,0.00752383,0.98587495,0.0014245322,0.00001591809,0.0000028500376,1.4115778e-8,0.0000073301553,0.004385956,0.00024583944],"about_ca_topic_score_codex":0.000003632463,"about_ca_topic_score_gemma":0.0000012165262,"teacher_disagreement_score":0.7201637,"about_ca_system_score_codex":0.00024676532,"about_ca_system_score_gemma":0.0014133471,"threshold_uncertainty_score":0.9999463},"labels":[],"label_agreement":null},{"id":"W3178587458","doi":"10.1007/s11136-021-02941-y","title":"The impact of acute pneumococcal disease on health state utility values: a systematic review","year":2021,"lang":"en","type":"review","venue":"Quality of Life Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Public Health; Public Health Ontario; Centre for Disability Prevention and Rehabilitation; SickKids Foundation; University of Toronto; University Health Network; Sinai Health System; University of Waterloo","funders":"Canada Research Chairs","keywords":"Quality of Life Research; Public health; Disease; Medicine; State (computer science); Health economics; Environmental health; Intensive care medicine; Nursing; Computer science; Pathology","score_opus":0.4390933797149147,"score_gpt":0.6079671906613061,"score_spread":0.16887381094639142,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3178587458","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00016834735,0.9900817,0.0000054935467,0.0017328127,0.000069407,0.0069153504,0.0008279174,0.000025742329,0.00017317855],"genre_scores_gemma":[0.00020522467,0.9986064,0.0000025133147,0.00012853048,0.00007102042,0.00042874183,0.000115494135,0.000045215624,0.00039688038],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.9755233,0.017511299,0.0034338487,0.0005741803,0.0022197927,0.000737604],"domain_scores_gemma":[0.9875833,0.0058369283,0.0015244099,0.002643636,0.0012588613,0.0011528964],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.02282986,0.00043185154,0.006699565,0.0003189487,0.00037966907,0.00003657097,0.0005366889,0.00014123006,0.00006760153],"category_scores_gemma":[0.013055239,0.00021771716,0.0029736776,0.0014214192,0.0006621055,0.000039220355,0.00021583859,0.001614542,0.00006420303],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000050370618,0.000614358,0.00006392214,0.9783514,0.0021651306,0.000021575277,0.000049977563,1.3261838e-7,0.0000012936064,0.00008337496,0.0017728964,0.016825544],"study_design_scores_gemma":[0.0002789621,0.0009958949,0.0007319075,0.9534271,0.0015558446,0.000026027956,0.00005854967,0.000004016084,2.528722e-7,0.00006831886,0.04265369,0.00019945939],"about_ca_topic_score_codex":0.0003154363,"about_ca_topic_score_gemma":0.000008381007,"teacher_disagreement_score":0.040880796,"about_ca_system_score_codex":0.00058822567,"about_ca_system_score_gemma":0.013869188,"threshold_uncertainty_score":0.9952582},"labels":[],"label_agreement":null},{"id":"W3178856343","doi":"10.1080/14760584.2021.1921579","title":"The epidemiologic and biologic basis for classifying older age as a high-risk, immunocompromising condition for pneumococcal vaccine policy","year":2021,"lang":"en","type":"review","venue":"Expert Review of Vaccines","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"International Federation on Ageing","funders":"Pfizer","keywords":"Immunosenescence; Medicine; Pneumococcal pneumonia; Vaccination; Immunology; Pneumococcal vaccine; Disease; Pneumococcal infections; Streptococcus pneumoniae; Public health; Internal medicine; Immune system; Biology; Pathology","score_opus":0.060552479211378615,"score_gpt":0.4396878001821921,"score_spread":0.3791353209708135,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3178856343","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000119254066,0.9892302,0.00027134077,0.0032729676,0.0005118983,0.0063545187,0.00012367559,0.00006820208,0.00004795132],"genre_scores_gemma":[0.000036452973,0.99189585,0.00070214923,0.0014697829,0.0013066593,0.0038466025,0.0004844852,0.000077466175,0.00018052138],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.996046,0.0007453076,0.0018688804,0.0007070121,0.00012746734,0.0005053261],"domain_scores_gemma":[0.99256206,0.0047024232,0.0014541798,0.00074523146,0.00038220827,0.00015387325],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0016501775,0.00068405416,0.0045270952,0.00023614554,0.0006274992,0.000041694617,0.00025314916,0.00045945673,0.000049388476],"category_scores_gemma":[0.008950937,0.00035248493,0.0017210626,0.00050921366,0.00007897292,0.0000685707,0.00012947827,0.00045005933,0.000005368331],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019756291,0.00011181568,0.00003768087,0.100965485,0.0006861493,0.000008394861,0.00002234658,9.332633e-8,0.00035629253,0.00084483874,0.0038968392,0.8930503],"study_design_scores_gemma":[0.00068915327,0.00050744746,0.00024592382,0.121543474,0.0016948921,0.00035144994,0.00003079802,0.0000034011161,0.000017624452,0.00015826766,0.8744433,0.0003142466],"about_ca_topic_score_codex":0.00006521633,"about_ca_topic_score_gemma":0.000007809833,"teacher_disagreement_score":0.8927361,"about_ca_system_score_codex":0.0001591498,"about_ca_system_score_gemma":0.00048702973,"threshold_uncertainty_score":0.9998927},"labels":[],"label_agreement":null},{"id":"W3179333137","doi":"10.1101/2021.07.02.21259855","title":"Aetiology of Lobar Pneumonia Determined by Multiplex Molecular Analyses of Lung and Pleural Aspirate Specimens in The Gambia","year":2021,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Medical Research Council; Bill and Melinda Gates Foundation","keywords":"Lobar pneumonia; Streptococcus pneumoniae; Pneumonia; Medicine; Pleural effusion; Pneumococcal pneumonia; Pneumococcal conjugate vaccine; Internal medicine; Bacterial pneumonia; Microbiology; Lung; Immunology; Biology; Antibiotics","score_opus":0.043078189266481916,"score_gpt":0.349742634048362,"score_spread":0.30666444478188004,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3179333137","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99693525,0.0014788621,0.000083525876,0.000569112,0.0001570844,0.00046312966,0.000047913338,0.0000155446,0.00024957416],"genre_scores_gemma":[0.9991817,0.00021580409,0.000068533765,0.00033649104,0.000040811825,0.00004141667,0.000056703324,0.000021988868,0.00003656716],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9980236,0.00040397065,0.0006665246,0.00042276338,0.0002430412,0.00024005731],"domain_scores_gemma":[0.99865943,0.00014912346,0.0003308575,0.0006371267,0.00014468924,0.00007877837],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035155402,0.00026897487,0.00083417766,0.00023027323,0.00003439265,0.0000149655,0.00019307795,0.00028186326,0.000045120356],"category_scores_gemma":[0.00025300664,0.0001931369,0.0002357497,0.00027424606,0.00027953964,0.000024716102,0.00020972935,0.0005564882,0.0000010891529],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017533317,0.00013075887,0.30519447,0.0002592168,0.00014729098,0.00017319371,0.00027362874,0.000095290285,0.69359386,0.0000051531465,0.000024816514,0.00008479754],"study_design_scores_gemma":[0.0010265306,0.00024970341,0.8682233,0.0003320732,0.0005190818,0.0001227837,0.00021036726,0.0012716091,0.12744102,0.00003381659,0.00035030764,0.00021937778],"about_ca_topic_score_codex":0.00023469795,"about_ca_topic_score_gemma":0.00012284041,"teacher_disagreement_score":0.5661528,"about_ca_system_score_codex":0.000032235625,"about_ca_system_score_gemma":0.00013073116,"threshold_uncertainty_score":0.78758943},"labels":[],"label_agreement":null},{"id":"W3179975227","doi":"10.1080/21645515.2021.1935169","title":"Gaps in knowledge about the vaccine coverage of immunocompromised children: a scoping review","year":2021,"lang":"en","type":"review","venue":"Human Vaccines & Immunotherapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Pneumococcal vaccine; Immunology; Diphtheria; Poliovirus; Varicella vaccine; Rubella; Vaccination; Tetanus; Measles; Poliomyelitis; Pediatrics; Disease; Immunization; Immune system; Streptococcus pneumoniae; Virus; Internal medicine","score_opus":0.06143788083232545,"score_gpt":0.4062665308495577,"score_spread":0.3448286500172323,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3179975227","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0001959561,0.99313635,0.000007479954,0.00010675269,0.00031970514,0.005259206,0.00003001732,0.00007049475,0.0008740654],"genre_scores_gemma":[0.00007747936,0.9973261,0.0000097720485,0.0008284288,0.00029176456,0.0004558175,0.00028638513,0.00018529223,0.00053898833],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99535096,0.0006766591,0.0025271678,0.0006157505,0.00028950087,0.00053997245],"domain_scores_gemma":[0.9962971,0.00034076997,0.0011063125,0.0018678664,0.00030614887,0.00008180722],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00073575415,0.00087163603,0.004600694,0.00044814358,0.0002874264,0.00005299709,0.0006146483,0.00044446785,0.000645868],"category_scores_gemma":[0.000074734606,0.0005751422,0.0015222224,0.0014202655,0.000069721274,0.000075338394,0.00020558255,0.001317744,0.000055802517],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023181048,0.0011625793,0.00058607897,0.2150072,0.0022038806,0.000037576672,0.00021482739,0.0000010909444,0.00031793021,0.00016600567,0.00034937952,0.7799303],"study_design_scores_gemma":[0.0016155237,0.00015387802,0.0011211451,0.47506788,0.0024256126,0.0003826842,0.0000055093387,5.521158e-7,0.000010979504,0.000005110888,0.5188162,0.00039493124],"about_ca_topic_score_codex":0.000029353387,"about_ca_topic_score_gemma":0.00007068102,"teacher_disagreement_score":0.77953535,"about_ca_system_score_codex":0.00021438998,"about_ca_system_score_gemma":0.0011619742,"threshold_uncertainty_score":0.99967},"labels":[],"label_agreement":null},{"id":"W3185221303","doi":"10.1080/00365540410020460","title":"Invasive Pneumococcal Disease in Greenland","year":2004,"lang":"en","type":"article","venue":"Scandinavian Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Incidence (geometry); Streptococcus pneumoniae; Serotype; Meningitis; Medicine; Pneumococcal disease; Pneumococcal infections; Pediatrics; Retrospective cohort study; Disease; Internal medicine; Immunology; Antibiotics; Biology; Microbiology","score_opus":0.009381033863384097,"score_gpt":0.2617436932160971,"score_spread":0.25236265935271296,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3185221303","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99702346,0.000592736,0.00008804933,0.00094547094,0.00041094347,0.00022445233,0.000019810383,0.00003351167,0.0006615637],"genre_scores_gemma":[0.99891275,0.00022472464,0.000006142332,0.00040263237,0.00037797992,0.000010592994,0.000004534564,0.000021582484,0.000039039885],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987587,0.00006121705,0.00047084363,0.00015829358,0.00027916435,0.00027180667],"domain_scores_gemma":[0.9985547,0.00006328841,0.00022887817,0.0001759068,0.00019527214,0.0007819583],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010188123,0.00018145928,0.00039115202,0.0005631512,0.000108945555,0.00003310855,0.000082605555,0.000060837072,0.000083728846],"category_scores_gemma":[0.00042062564,0.00014208308,0.00031722416,0.00043634395,0.00013748305,0.0002312177,0.000021453083,0.0003266903,0.000028807639],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019733534,0.0008352768,0.99206024,0.00007579253,0.000076938755,0.0025825808,0.00011320059,0.000979211,0.0024569791,0.00010901446,0.00004743237,0.0004660021],"study_design_scores_gemma":[0.0047296737,0.0009759026,0.9882783,0.00085901306,0.0002557933,0.0009885378,0.00006909414,0.00000209963,0.0001873758,0.003209823,0.0002907332,0.00015362176],"about_ca_topic_score_codex":0.000029340668,"about_ca_topic_score_gemma":0.00005845589,"teacher_disagreement_score":0.0045323386,"about_ca_system_score_codex":0.0003541215,"about_ca_system_score_gemma":0.00081024267,"threshold_uncertainty_score":0.579398},"labels":[],"label_agreement":null},{"id":"W3191459417","doi":"10.11575/prism/38904","title":"Invasive Pneumococcal Disease in Calgary During the Sars-CoV-2 Pandemic 2020","year":2021,"lang":"en","type":"article","venue":"PRISM (University of Calgary)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Pandemic; Pneumococcal disease; Coronavirus disease 2019 (COVID-19); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); 2019-20 coronavirus outbreak; Medicine; Virology; Disease; Streptococcus pneumoniae; Outbreak; Infectious disease (medical specialty); Biology; Microbiology","score_opus":0.015140076651092587,"score_gpt":0.23143327230546457,"score_spread":0.21629319565437197,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3191459417","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937471,0.00022788582,0.0007080592,0.0024423741,0.00008912936,0.0002283492,9.3448654e-7,0.000044969802,0.0025111707],"genre_scores_gemma":[0.99758023,0.0003832491,0.00015238397,0.00042869334,0.000026656695,0.0000012155084,0.0000110890005,0.000011567996,0.001404935],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991255,0.00010214564,0.00013133379,0.00024597367,0.00018765935,0.00020740872],"domain_scores_gemma":[0.99934745,0.00007908367,0.0000651097,0.00031067673,0.00006921066,0.00012848021],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008087791,0.00011431699,0.00023888219,0.0000990794,0.00018421457,0.000006105188,0.00012904589,0.00009419415,0.00008908157],"category_scores_gemma":[0.00009801482,0.000106557745,0.00016835469,0.0003072148,0.00018398534,0.00010458146,0.00015760672,0.00036829783,0.00003967064],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015712761,0.0002482415,0.45764235,0.00016992686,0.00008389446,0.0040530385,0.0008247094,0.0000016310327,0.5332465,0.00009173994,0.0002580849,0.0032227582],"study_design_scores_gemma":[0.0014603223,0.000042007818,0.9858442,0.00012495468,0.00012555232,0.00010661245,0.00013656307,0.00081665826,0.004194997,0.00011313513,0.006904332,0.0001306981],"about_ca_topic_score_codex":0.00029243148,"about_ca_topic_score_gemma":0.00020988878,"teacher_disagreement_score":0.5290515,"about_ca_system_score_codex":0.000110709385,"about_ca_system_score_gemma":0.00040301558,"threshold_uncertainty_score":0.43452987},"labels":[],"label_agreement":null},{"id":"W3194515707","doi":"10.1016/j.vaccine.2021.08.061","title":"Whole genome characterization of Streptococcus pneumoniae from respiratory and blood cultures collected from Canadian hospitals before and after PCV-13 implementation in Canada: Focus on serotypes 22F and 33F from CANWARD 2007–2018","year":2021,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Sciences Centre; Manitoba Health; Public Health Agency of Canada; University of Manitoba","funders":"Merck Canada","keywords":"Streptococcus pneumoniae; Serotype; Multilocus sequence typing; Pneumococcal conjugate vaccine; Biology; Virology; Microbiology; Population; Genotype; Genetics; Gene; Medicine; Antibiotics","score_opus":0.004844888929473797,"score_gpt":0.2239015503567129,"score_spread":0.2190566614272391,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3194515707","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9928247,0.00078276097,0.0000013170229,0.0014701475,0.00012086943,0.00061252207,0.0041492013,0.000012899732,0.00002558079],"genre_scores_gemma":[0.9977483,0.00014053316,0.000014378688,0.00088387355,0.00016061311,0.00007985912,0.000911739,0.000023307997,0.000037372214],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987122,0.00009343014,0.00040850166,0.00040143155,0.00015451934,0.00022992508],"domain_scores_gemma":[0.9991974,0.000054659125,0.00013682463,0.00021688934,0.00012298816,0.00027124447],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000055744524,0.00020917569,0.00046509283,0.0001677282,0.00009191662,0.00003237484,0.00003591309,0.00011823669,0.00027760942],"category_scores_gemma":[0.00004407203,0.00018509157,0.000026329119,0.00023329444,0.000022884133,0.00009722825,0.000035115918,0.00015888194,0.0000014482969],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008580302,0.00002725308,0.7412898,0.000016315878,0.0001384685,0.000109041735,0.00068939413,8.8484404e-7,0.2569677,0.0000030282695,0.000061213155,0.0006111157],"study_design_scores_gemma":[0.0051881415,0.00021516868,0.9821741,0.00011337334,0.00020836387,0.000003553854,0.0004555907,0.0000155416,0.009934147,0.00006989963,0.0014600799,0.0001620603],"about_ca_topic_score_codex":0.937735,"about_ca_topic_score_gemma":0.9975344,"teacher_disagreement_score":0.24703355,"about_ca_system_score_codex":0.00022062336,"about_ca_system_score_gemma":0.0010087662,"threshold_uncertainty_score":0.75478154},"labels":[],"label_agreement":null},{"id":"W3195568969","doi":"10.3138/jammi-2021-05-30","title":"Popularization of “10”","year":2021,"lang":"en","type":"article","venue":"Journal of the Association of Medical Microbiology and Infectious Disease Canada","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Stollery Children's Hospital; Children's Hospital of Eastern Ontario","funders":"","keywords":"Computer science","score_opus":0.003934899529351131,"score_gpt":0.2242443241728379,"score_spread":0.22030942464348677,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3195568969","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9846894,0.00040646642,0.00002894669,0.013887428,0.0006996292,0.00004389567,0.000026890733,0.0000019494144,0.00021537862],"genre_scores_gemma":[0.99776804,0.00014846133,0.0000026317214,0.0016439226,0.00009168744,4.2501452e-7,0.0000063280186,0.000003063209,0.0003354339],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99912333,0.00016878272,0.00036170857,0.000050736806,0.00022017407,0.00007524682],"domain_scores_gemma":[0.99864686,0.00012065651,0.00053240464,0.00007467903,0.0004838138,0.00014161455],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032712898,0.00004917642,0.00022749354,0.000039127222,0.00005550738,0.0000021012324,0.00005094374,0.000117571304,0.00017890568],"category_scores_gemma":[0.002926863,0.000032678246,0.0001052966,0.00014193577,0.000055385153,0.000022477778,0.000027269354,0.00019774657,1.8902777e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004291377,0.00020663172,0.9152178,0.00010497386,0.00038168242,0.000037019774,0.000024080704,0.00001933938,0.06710935,0.00034705768,0.016025295,0.00048381742],"study_design_scores_gemma":[0.0025841377,0.00020186602,0.8939514,0.00033686025,0.0006376692,0.0006892971,0.000058949874,0.000022719598,0.009770439,0.00026485688,0.091393344,0.00008842365],"about_ca_topic_score_codex":0.0017295681,"about_ca_topic_score_gemma":0.014313491,"teacher_disagreement_score":0.07536805,"about_ca_system_score_codex":0.00017386346,"about_ca_system_score_gemma":0.0027299654,"threshold_uncertainty_score":0.7987264},"labels":[],"label_agreement":null},{"id":"W3195817928","doi":"10.1097/inf.0000000000002766","title":"The Etiology of Childhood Pneumonia in The Gambia","year":2021,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Centers for Disease Control and Prevention; Johns Hopkins University; Bill and Melinda Gates Foundation; International Centre for Diarrhoeal Disease Research, Bangladesh; National Research Foundation; University of Oxford; Medical Research Council; London School of Hygiene and Tropical Medicine; Johns Hopkins Bloomberg School of Public Health; Wellcome Trust; University of Otago; Pfizer; GlaxoSmithKline; Sanofi","keywords":"Medicine; Etiology; Streptococcus pneumoniae; Pneumonia; Sputum; Haemophilus influenzae; Bacterial pneumonia; Epidemiology; Pneumococcal conjugate vaccine; Incidence (geometry); Pediatrics; Internal medicine; Immunology; Tuberculosis; Pathology; Antibiotics; Microbiology; Biology","score_opus":0.007404760285106087,"score_gpt":0.25596979052853697,"score_spread":0.24856503024343088,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3195817928","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98599,0.0017501513,0.000026162108,0.009185302,0.0007020331,0.00023687068,0.0000072551343,0.000020385081,0.002081835],"genre_scores_gemma":[0.9936417,0.00319137,0.0000019037292,0.0015169889,0.0014900458,0.000024842935,0.0000016869321,0.000014258956,0.00011721352],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981242,0.00065047934,0.000440616,0.00013270059,0.0003296459,0.00032237687],"domain_scores_gemma":[0.99831617,0.0006594835,0.00022647448,0.00042779153,0.00021468003,0.00015542733],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00090090215,0.00013984626,0.00020986612,0.00012038874,0.0008069785,0.00006287206,0.00020575983,0.000067268506,0.00008984867],"category_scores_gemma":[0.00088085583,0.00006229964,0.00028739398,0.00071774307,0.00014956038,0.000050083483,0.00005089498,0.0009111808,0.00002986733],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046560348,0.0006876483,0.9936746,0.000027077465,0.00009399567,0.00031013496,0.0006507107,0.00018100454,0.0005212729,0.0004396754,0.002275938,0.0010914268],"study_design_scores_gemma":[0.0009227105,0.00016812787,0.9855499,0.000013822596,0.0005050069,0.0050455546,0.0003235618,0.000022056305,0.00001096609,0.0025720356,0.004786199,0.00008004316],"about_ca_topic_score_codex":0.000011680663,"about_ca_topic_score_gemma":0.000056477107,"teacher_disagreement_score":0.008124639,"about_ca_system_score_codex":0.00005896418,"about_ca_system_score_gemma":0.0008358098,"threshold_uncertainty_score":0.6206708},"labels":[],"label_agreement":null},{"id":"W3195933183","doi":"10.21065/19257430.2.1","title":"TREATMENT OF UPPER RESPIRATORY TRACT INFECTION: A CASE REPORT","year":2012,"lang":"en","type":"article","venue":"Canadian Journal of Applied Sciences","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Amoxicillin; Respiratory tract; Ciprofloxacin; Medicine; Respiratory tract infections; Upper respiratory tract infection; Respiratory system; Respiratory infection; Lower respiratory tract infection; Antibiotics; Internal medicine; Intensive care medicine; Microbiology; Biology","score_opus":0.052732707132542946,"score_gpt":0.31567785783270697,"score_spread":0.262945150700164,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3195933183","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9786066,0.00031923008,0.000012625614,0.00031572054,0.0005117507,0.000107716594,0.0000026721038,0.0000041956855,0.020119486],"genre_scores_gemma":[0.9992387,0.000007489137,0.00008291064,0.00019547142,0.0004104686,0.0000037943087,2.0669192e-7,0.000005023205,0.000055918837],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991086,0.000017150536,0.0003675192,0.0000847245,0.00017040013,0.00025161082],"domain_scores_gemma":[0.99874544,0.000033921104,0.0002557124,0.00011937633,0.00010416331,0.000741367],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044786264,0.000086651264,0.0002242089,0.00043239794,0.00026235668,0.000016310996,0.000041395637,0.0000582566,0.00013570234],"category_scores_gemma":[0.00004645828,0.00005902634,0.00012031572,0.00037482812,0.00034473275,0.00013944885,0.0000019846068,0.00009309589,0.000007687973],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000137124025,0.00024166497,0.9689534,0.000016720156,0.00007049547,0.012630259,0.001377378,0.000041756794,0.01054635,0.00097624207,0.00037274897,0.004759281],"study_design_scores_gemma":[0.0010615404,0.0021208376,0.38816753,0.000045172947,0.00023586625,0.33414644,0.0010855295,0.000003928957,0.007206919,0.00010190072,0.26565108,0.00017328252],"about_ca_topic_score_codex":0.0009970746,"about_ca_topic_score_gemma":0.0013504967,"teacher_disagreement_score":0.5807859,"about_ca_system_score_codex":0.00018171077,"about_ca_system_score_gemma":0.0021331871,"threshold_uncertainty_score":0.37841824},"labels":[],"label_agreement":null},{"id":"W3198553275","doi":"10.1071/ma21032","title":"Exploiting the struggle for haem: a novel therapeutic approach against Haemophilus influenzae","year":2021,"lang":"en","type":"article","venue":"Microbiology Australia","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carbon Engineering (Canada)","funders":"","keywords":"Antibiotic resistance; Haemophilus influenzae; Disease; Medicine; Antibiotics; Intensive care medicine; Immunology; Biology; Microbiology","score_opus":0.10029570215748197,"score_gpt":0.3301344560231967,"score_spread":0.22983875386571473,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3198553275","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99270433,0.00024823687,0.0021673834,0.0030293034,0.00046110255,0.0006022774,0.00013760847,0.00008554213,0.0005641843],"genre_scores_gemma":[0.98948944,0.000007386034,0.00079854205,0.0058726612,0.00030535957,0.00015159034,0.00021245665,0.000026699758,0.0031358947],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.998863,0.000067566914,0.000283744,0.0003408444,0.00003753366,0.0004073468],"domain_scores_gemma":[0.9992289,0.000101618614,0.00008621858,0.00036679968,0.00014567378,0.00007079955],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018073131,0.00019026634,0.00029896578,0.0000556435,0.00030951842,0.000023591936,0.00011878143,0.00024148937,0.000066526394],"category_scores_gemma":[0.000070194656,0.00012837234,0.00020852912,0.00019824081,0.00023427056,0.00004048863,0.00004928897,0.0003462415,0.00004932566],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002329949,0.0001952027,0.004414956,0.000059307706,0.00021804967,0.000013811473,0.00020334806,0.000080296704,0.99129945,0.0003560812,0.0027371813,0.00039902516],"study_design_scores_gemma":[0.005806261,0.00047308617,0.02348613,0.0001412593,0.0006360551,0.0045442446,0.0017105854,0.0002125255,0.23776722,0.00025471073,0.7242954,0.0006725656],"about_ca_topic_score_codex":0.000009147593,"about_ca_topic_score_gemma":0.000010207658,"teacher_disagreement_score":0.75353223,"about_ca_system_score_codex":0.000051497875,"about_ca_system_score_gemma":0.00013195675,"threshold_uncertainty_score":0.5234872},"labels":[],"label_agreement":null},{"id":"W3199170880","doi":"10.1212/wnl.90.15_supplement.p6.385","title":"Long-Term Efficacy of Early Fingolimod Treatment in Young Adult Patients With Relapsing Multiple Sclerosis (P6.385)","year":2018,"lang":"en","type":"article","venue":"Neurology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario","funders":"","keywords":"Fingolimod; Multiple sclerosis; Medicine; Relapsing remitting; Pediatrics; Internal medicine; Psychiatry","score_opus":0.02110492805853493,"score_gpt":0.25140334237001266,"score_spread":0.23029841431147774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3199170880","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986756,0.0000072348917,0.000015418093,0.0002368674,0.00025433782,0.00038764885,0.0000060302395,0.000037430982,0.00037947213],"genre_scores_gemma":[0.99938506,0.000011299447,0.000019963807,0.00042041048,0.000086601016,0.000023059049,0.000007574048,0.000021697799,0.000024364437],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99910253,0.00006826458,0.00022230056,0.00025565154,0.000108575885,0.0002426655],"domain_scores_gemma":[0.99936324,0.00008528805,0.000091776725,0.00026069127,0.00012409773,0.000074885254],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000027126312,0.00013300504,0.00025943437,0.00017036583,0.00006719857,0.000004550571,0.00004790977,0.00011648459,0.00002287437],"category_scores_gemma":[0.00007153436,0.00009810727,0.000054028904,0.00018810437,0.00017894887,0.000043524273,0.000020703777,0.000145761,0.000027115848],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011214375,0.00082607573,0.9866037,0.0000107415935,0.000034291643,0.000023205515,0.00042243756,0.000005845207,0.009142956,0.000004882885,0.0000043256236,0.0018001314],"study_design_scores_gemma":[0.0070317504,0.011720091,0.9797032,0.000058079328,0.00006238559,0.000021719525,0.0000016381695,0.000036737558,0.0012563819,0.0000013643316,0.000035251673,0.00007142024],"about_ca_topic_score_codex":0.00045944142,"about_ca_topic_score_gemma":0.0017338195,"teacher_disagreement_score":0.010894015,"about_ca_system_score_codex":0.000035232293,"about_ca_system_score_gemma":0.000046639947,"threshold_uncertainty_score":0.40006986},"labels":[],"label_agreement":null},{"id":"W3199196973","doi":"10.1001/jamanetworkopen.2021.26114","title":"Trends in Outpatient Antibiotic Prescriptions in the United States During the COVID-19 Pandemic in 2020","year":2021,"lang":"en","type":"article","venue":"JAMA Network Open","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Astellas Pharma; Medicines Company; Shionogi; Cidara Therapeutics","keywords":"Medicine; Amoxicillin; Medical prescription; Azithromycin; Guideline; Quarter (Canadian coin); Antimicrobial stewardship; Observational study; Demography; Family medicine; Internal medicine; Antibiotics; Antibiotic resistance; Geography; Pharmacology","score_opus":0.05309451944252336,"score_gpt":0.3363716897775275,"score_spread":0.28327717033500416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3199196973","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9742989,0.00026312727,0.0000057264597,0.023202104,0.00014597032,0.00050549314,0.000009705043,0.000018340772,0.0015506272],"genre_scores_gemma":[0.9880454,0.0004318554,0.000008535817,0.010399508,0.00014251136,0.000061449486,0.0001121995,0.000011839539,0.0007866919],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982801,0.00070239464,0.0003415338,0.00022690921,0.00014562198,0.00030345898],"domain_scores_gemma":[0.9991608,0.0002953467,0.00006401413,0.0003697417,0.000029168632,0.00008090539],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008520211,0.0001154012,0.00021619337,0.000176863,0.00017089548,0.00010973758,0.0002603082,0.00009525231,0.0001287217],"category_scores_gemma":[0.00022966044,0.00006904669,0.000049056296,0.0024307538,0.000058818805,0.00009932548,0.00017695468,0.0006186067,0.000010545982],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006357632,0.0002201865,0.95995986,0.000024322186,0.000018981284,0.0002851366,0.003132409,0.03162754,0.00019828722,0.00006577904,0.0039698235,0.00043412094],"study_design_scores_gemma":[0.0019334363,0.0000663844,0.9210528,0.00017291999,0.00002027223,0.0001137374,0.0018748182,0.0017268171,0.000006589924,0.00008301556,0.072868206,0.00008100571],"about_ca_topic_score_codex":0.0017003175,"about_ca_topic_score_gemma":0.015339813,"teacher_disagreement_score":0.06889839,"about_ca_system_score_codex":0.00021591476,"about_ca_system_score_gemma":0.00015074208,"threshold_uncertainty_score":0.8559976},"labels":[],"label_agreement":null},{"id":"W3200885023","doi":"10.1038/s41396-021-01108-4","title":"Non-diphtheriae <i>Corynebacterium</i> species are associated with decreased risk of pneumococcal colonization during infancy","year":2021,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Fogarty International Center; Office of AIDS Research; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; School of Medicine, Duke University; Center for AIDS Research, University of Washington; University of Pennsylvania; National Institutes of Health; Children's Hospital of Philadelphia","keywords":"Biology; Streptococcus pneumoniae; Microbiome; Colonization; Microbiology; Colonisation resistance; Pneumococcal infections; Respiratory tract infections; Immunology; Antibiotics; Respiratory system; Genetics","score_opus":0.009325235118455068,"score_gpt":0.22557755653140446,"score_spread":0.2162523214129494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3200885023","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972013,0.000058545906,0.00010889579,0.0010078935,0.00020689187,0.00012785743,0.000018374252,0.000024453862,0.0012457414],"genre_scores_gemma":[0.9984721,0.00016282838,0.00002023529,0.0001740355,0.00028434378,0.000004555264,0.0000066802136,0.000022201071,0.0008530498],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989599,0.00016502189,0.00030297265,0.000106296306,0.0002721342,0.00019365503],"domain_scores_gemma":[0.9986161,0.000085955704,0.0004680367,0.00020330404,0.000499892,0.00012670703],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025509225,0.0001257506,0.0002884665,0.00006794827,0.00037118205,0.00004124918,0.00007555302,0.00007883055,0.00019888658],"category_scores_gemma":[0.00037740293,0.00007569168,0.00011762098,0.00036652267,0.00010082044,0.0000885519,0.000026564327,0.0004776462,0.000006142874],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000953642,0.00020436532,0.56832576,0.000021602516,0.00030474758,0.00015438462,0.0004435569,0.00015839729,0.43015352,0.0000030928982,0.00009781794,0.00003736542],"study_design_scores_gemma":[0.0016827597,0.00018333695,0.96050906,0.00035898195,0.0003372649,0.0011958824,0.00038709008,0.000040866023,0.03427775,0.000018764109,0.0009185281,0.00008968965],"about_ca_topic_score_codex":0.000005650182,"about_ca_topic_score_gemma":0.000056073826,"teacher_disagreement_score":0.39587578,"about_ca_system_score_codex":0.00007676153,"about_ca_system_score_gemma":0.0003028935,"threshold_uncertainty_score":0.30866173},"labels":[],"label_agreement":null},{"id":"W3201698567","doi":"10.3390/microorganisms9102116","title":"PCR and Culture Analysis of Streptococcus pneumoniae Nasopharyngeal Carriage in Healthy Children","year":2021,"lang":"en","type":"article","venue":"Microorganisms","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia; Alberta Children's Hospital; Public Health Agency of Canada; University of Calgary","funders":"Pfizer Canada; Alberta Precision Laboratories; Pfizer","keywords":"Streptococcus pneumoniae; Serotype; Carriage; Microbiology; Pneumococcal conjugate vaccine; Asymptomatic; Virology; Biology; Medicine; Internal medicine; Antibiotics; Pathology","score_opus":0.008191884655328139,"score_gpt":0.26630410550749106,"score_spread":0.2581122208521629,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3201698567","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997416,0.0009307477,0.000016264798,0.0009320685,0.00006370509,0.0002142522,0.000087519686,0.000029403549,0.00031003944],"genre_scores_gemma":[0.9984622,0.00017149074,0.00006709663,0.00086371397,0.00005161955,0.000007950899,0.00010351919,0.000015757423,0.0002566773],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989871,0.000061547915,0.00030928332,0.00031265602,0.00012340557,0.0002060547],"domain_scores_gemma":[0.99940264,0.000021017757,0.00007714071,0.00027310912,0.000089637,0.00013646792],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008569598,0.00014004858,0.0004920712,0.00026959783,0.00006732751,0.000013798435,0.00004853961,0.00013421712,0.0001756828],"category_scores_gemma":[0.000034545585,0.00012226723,0.00013094087,0.0011710557,0.0000673908,0.000041228788,0.000050478404,0.00023439708,0.000007093867],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00000928496,0.00012948719,0.44899625,0.000024636347,0.0003240489,0.00005722825,0.00055844185,0.0000059715685,0.5495436,0.000021008538,0.00006936747,0.00026065172],"study_design_scores_gemma":[0.0011311907,0.00023222895,0.9153251,0.000029745428,0.00073444453,0.0000834059,0.00019341585,0.00001169992,0.081050254,0.000018719074,0.0010741608,0.000115635616],"about_ca_topic_score_codex":0.00007603371,"about_ca_topic_score_gemma":0.00040941904,"teacher_disagreement_score":0.46849337,"about_ca_system_score_codex":0.00005503499,"about_ca_system_score_gemma":0.00015832335,"threshold_uncertainty_score":0.49859127},"labels":[],"label_agreement":null},{"id":"W3202683592","doi":"10.3390/life11101030","title":"Risk Factors and Outcomes of Hospital Acquired Pneumonia in Young Bangladeshi Children","year":2021,"lang":"en","type":"article","venue":"Life","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Global Affairs Canada; Department for International Development; International Centre for Diarrhoeal Disease Research, Bangladesh; Styrelsen för Internationellt Utvecklingssamarbete; World Health Organization","keywords":"Medicine; Pneumonia; Bacteremia; Confounding; Diarrhea; Logistic regression; Pediatrics; Malnutrition; Multivariate analysis; Severe Acute Malnutrition; Internal medicine; Antibiotics","score_opus":0.00785691325896332,"score_gpt":0.24717430009237149,"score_spread":0.23931738683340817,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3202683592","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982019,0.00014003206,0.0000041516128,0.00074972137,0.00023175696,0.00013266325,0.00003434102,0.00002896567,0.0004764398],"genre_scores_gemma":[0.9995416,0.00008256351,0.000020052956,0.0001489869,0.000048386886,0.0000049802297,0.000013722926,0.000011757643,0.00012794597],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993165,0.00004096128,0.00021157938,0.00016696857,0.00012290268,0.00014109943],"domain_scores_gemma":[0.9995387,0.000054535267,0.00006737599,0.00017996543,0.00003946901,0.00011993382],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005450198,0.00010671363,0.0002976624,0.00008216167,0.00004604993,0.000009250813,0.000031771302,0.000083074425,0.00004457388],"category_scores_gemma":[0.00035182867,0.00008093817,0.000079756675,0.00017812251,0.00005938792,0.000055170825,0.000036783684,0.00011090717,0.000005759496],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000031915354,0.00016100492,0.9936765,0.000012089529,0.00009088084,0.000014228108,0.00048075285,0.0000018233351,0.00540949,0.000027644955,0.00003383203,0.000088600435],"study_design_scores_gemma":[0.0007375254,0.00012455233,0.99665296,0.000023472607,0.000068671936,0.000013561456,0.00023097763,0.000007922479,0.0019277317,0.000017314094,0.00011228777,0.00008303133],"about_ca_topic_score_codex":0.00021532697,"about_ca_topic_score_gemma":0.00011876266,"teacher_disagreement_score":0.0034817583,"about_ca_system_score_codex":0.000017151855,"about_ca_system_score_gemma":0.00007199075,"threshold_uncertainty_score":0.33005628},"labels":[],"label_agreement":null},{"id":"W3203106116","doi":"10.3389/fmicb.2021.714815","title":"The Role of the Moraxella catarrhalis CopB Protein in Facilitating Iron Acquisition From Human Transferrin and Lactoferrin","year":2021,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Alberta Children's Hospital Research Institute","keywords":"Lactoferrin; Moraxella catarrhalis; Moraxella (Branhamella) catarrhalis; Transferrin; Bacterial outer membrane; Biochemistry; Microbiology; Biology; Mutant; Glycoprotein; Binding protein; Escherichia coli; Gene; Chemistry; Haemophilus influenzae","score_opus":0.005365682414482613,"score_gpt":0.22470462653618173,"score_spread":0.2193389441216991,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3203106116","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99631435,0.002089748,0.00004646908,0.0007534728,0.000169854,0.00031237124,0.00007750968,0.000007110815,0.00022913664],"genre_scores_gemma":[0.99937624,0.00004961846,0.00019031014,0.00014471778,0.0000233347,0.000027427617,0.000043171643,0.0000070373994,0.00013812896],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99906373,0.00027199704,0.00026723798,0.00019312493,0.000031411226,0.0001725274],"domain_scores_gemma":[0.9996491,0.000050268052,0.000046337198,0.00020202155,0.000028594264,0.000023657083],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016025588,0.00009341399,0.00022261858,0.000054813023,0.00011108516,0.000006285491,0.000075140226,0.00013254225,0.00001842077],"category_scores_gemma":[0.000044299537,0.0000610417,0.000051869312,0.00014494364,0.00024533726,0.000021333091,0.000035676436,0.0002555977,0.0000011003574],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024297038,0.00004206725,0.1668183,0.00001708147,0.00001601273,0.000006469071,0.00093118224,0.000005629475,0.83057004,0.000039685423,0.000078673605,0.0014505581],"study_design_scores_gemma":[0.0032206865,0.00026574236,0.29136384,0.0004439348,0.00007019593,0.000079326775,0.0123635195,0.00012744947,0.6621768,0.0028799444,0.026739772,0.0002687885],"about_ca_topic_score_codex":0.00044135065,"about_ca_topic_score_gemma":0.0015382242,"teacher_disagreement_score":0.16839324,"about_ca_system_score_codex":0.00006247592,"about_ca_system_score_gemma":0.00006155674,"threshold_uncertainty_score":0.24892083},"labels":[],"label_agreement":null},{"id":"W3203641953","doi":"10.21203/rs.3.rs-863168/v1","title":"Clinical Sign and Biomarker-based Algorithm to Identify Bacterial Pneumonia Among Outpatients with Lower Respiratory Tract Infection in Tanzania","year":2021,"lang":"en","type":"preprint","venue":"Research Square","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; University Health Network","funders":"Canadian Institutes of Health Research; Fondation Leenaards; Bill and Melinda Gates Foundation","keywords":"Procalcitonin; Medicine; Lower respiratory tract infection; Pneumonia; Internal medicine; Logistic regression; Prospective cohort study; Biomarker; Respiratory tract infections; Respiratory system; Algorithm; Gastroenterology; Sepsis; Immunology; Biology","score_opus":0.09194830587496407,"score_gpt":0.4449590787291467,"score_spread":0.35301077285418264,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3203641953","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945481,0.00012501345,0.000509075,0.00037413038,0.0011892642,0.0028173167,0.00008662464,0.00011290449,0.00023757333],"genre_scores_gemma":[0.9979346,0.00012912367,0.00025323677,0.00021095198,0.00054275256,0.000576454,0.00016329395,0.00010653164,0.0000830499],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.993271,0.0019635374,0.0010474602,0.0014325893,0.0014337443,0.000851687],"domain_scores_gemma":[0.99630827,0.00047856418,0.00021719217,0.001035653,0.001090658,0.0008696932],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.003249203,0.00048944046,0.0009943707,0.0015480439,0.00027681864,0.00036650625,0.00019760907,0.001016399,0.00021648],"category_scores_gemma":[0.0010821462,0.00042420995,0.00029391013,0.0012217239,0.00047259626,0.00019792403,0.0005390472,0.0031633147,0.000045625824],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006171808,0.0020756477,0.96044844,0.00076630566,0.00014240555,0.0012470392,0.000133855,0.000046472847,0.009418633,8.302363e-7,0.00020490495,0.024898285],"study_design_scores_gemma":[0.0030745978,0.0032991848,0.98550606,0.0034078779,0.000080528196,0.000021764625,0.000090023896,0.0005607657,0.0002515304,0.0000106485095,0.0032764587,0.0004205872],"about_ca_topic_score_codex":0.00090817845,"about_ca_topic_score_gemma":0.0012059782,"teacher_disagreement_score":0.025057593,"about_ca_system_score_codex":0.00058446144,"about_ca_system_score_gemma":0.0018674341,"threshold_uncertainty_score":0.99982095},"labels":[],"label_agreement":null},{"id":"W3205095382","doi":"10.1128/aac.01370-21","title":"Linear Regression Equations To Predict β-Lactam, Macrolide, Lincosamide, and Fluoroquinolone MICs from Molecular Antimicrobial Resistance Determinants in <i>Streptococcus pneumoniae</i>","year":2021,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Yukon Health and Social Services; Queen Elizabeth II Health Sciences Centre; Government of New Brunswick; BC Centre for Disease Control; Public Health Ontario; Government of Northwest Territories; Provincial Laboratory of Public Health; University of Toronto; Ste. Anne's Hospital; University of Manitoba; Mount Sinai Hospital; Public Health Agency of Canada","funders":"","keywords":"Antimicrobial; Streptococcus pneumoniae; Penicillin; Antibiotic resistance; Linear regression; Regression; Regression analysis; Minimum inhibitory concentration","score_opus":0.012327081901397023,"score_gpt":0.2786052739098182,"score_spread":0.2662781920084212,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3205095382","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98852545,0.000119123426,0.0002948287,0.009988507,0.0002163072,0.0005393468,0.0001655339,0.000058361944,0.000092559465],"genre_scores_gemma":[0.97752655,0.0021260332,0.00077073666,0.018668279,0.00018083848,0.000021265192,0.000076093165,0.000058662397,0.0005715621],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998201,0.00007609856,0.00048338156,0.0006630925,0.00016875693,0.00040768072],"domain_scores_gemma":[0.999073,0.000057596608,0.00012338941,0.00038594205,0.000120780234,0.00023929181],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00009563183,0.00032302225,0.00052310264,0.00015646109,0.00019981831,0.00007292527,0.0000968269,0.00024634498,0.000045571498],"category_scores_gemma":[0.000064140775,0.0002972823,0.000106101055,0.00037207294,0.00014815586,0.0001117312,0.00010136932,0.00029303404,0.000013345284],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015966604,0.0003637015,0.12872742,0.0000922077,0.00007145522,0.00047739936,0.00037037802,0.000009051867,0.8601083,0.000008324023,0.00376825,0.0058438363],"study_design_scores_gemma":[0.0069894237,0.00022423916,0.27268708,0.0020245193,0.00016069018,0.00015783649,0.00007267932,0.00032786687,0.6433876,0.00008445336,0.07314793,0.00073564105],"about_ca_topic_score_codex":0.000060329283,"about_ca_topic_score_gemma":0.0002390794,"teacher_disagreement_score":0.21672067,"about_ca_system_score_codex":0.00005772548,"about_ca_system_score_gemma":0.00014198579,"threshold_uncertainty_score":0.9999479},"labels":[],"label_agreement":null},{"id":"W3206476824","doi":"10.5578/mb.20219703","title":"Burden of Pneumococcal Meningitis and Bacteremia, Serotype Distribution and Antibiotic Resistance in Healthy Children After Conjugated Pneumococcal Vaccine Implementation: Single Center Experience","year":2021,"lang":"en","type":"article","venue":"Mikrobiyoloji Bulteni","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pediatric Oncology Group","funders":"","keywords":"Medicine; Bacteremia; Streptococcus pneumoniae; Meningitis; Internal medicine; Sepsis; Pneumonia; Ceftriaxone; Serotype; Pediatrics; Antibiotics; Immunology; Microbiology; Biology","score_opus":0.009763071647254144,"score_gpt":0.2769465410322672,"score_spread":0.26718346938501303,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3206476824","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99673545,0.00048659585,0.00002311743,0.0019402646,0.00009253145,0.00044595706,0.00016200873,0.000034348504,0.00007970426],"genre_scores_gemma":[0.9990514,0.0001641751,0.000106337895,0.00015422999,0.00007301701,0.000024528214,0.00032770156,0.000017908846,0.00008068672],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984839,0.00009307412,0.0005085135,0.0004371905,0.00014866104,0.00032866935],"domain_scores_gemma":[0.9992678,0.00004642277,0.00012120104,0.00022819078,0.00016429149,0.00017206962],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000102887716,0.00019986421,0.00039957836,0.00009229674,0.0000946699,0.000032877153,0.00004500052,0.0001242315,0.00012063611],"category_scores_gemma":[0.00005565936,0.00018860004,0.000051295232,0.00033233498,0.00011691859,0.0001451393,0.00007817502,0.00020767876,0.0000038400767],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031036942,0.00017079563,0.644637,0.000115078496,0.0000348596,0.000090565154,0.00079507945,8.969101e-7,0.35339966,0.000024104169,0.000034129527,0.0003874878],"study_design_scores_gemma":[0.0032943767,0.0004607991,0.97003007,0.00029350864,0.000048254726,0.0006281212,0.0004321649,0.000009885302,0.022798873,0.000010314002,0.0018088784,0.00018475261],"about_ca_topic_score_codex":0.00010103953,"about_ca_topic_score_gemma":0.00044757166,"teacher_disagreement_score":0.3306008,"about_ca_system_score_codex":0.00009772077,"about_ca_system_score_gemma":0.00008700015,"threshold_uncertainty_score":0.7690886},"labels":[],"label_agreement":null},{"id":"W3206667783","doi":"10.1007/s40121-021-00544-1","title":"Clinical and Economic Burden of Pneumococcal Disease Due to Serotypes Contained in Current and Investigational Pneumococcal Conjugate Vaccines in Children Under Five Years of Age","year":2021,"lang":"en","type":"article","venue":"Infectious Diseases and Therapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Pfizer","keywords":"Pneumococcal disease; Medicine; Serotype; Disease; Pneumococcal conjugate vaccine; Otitis; Pneumonia; Disease surveillance; Epidemiology; Environmental health; Pediatrics; Streptococcus pneumoniae; Virology; Internal medicine; Antibiotics; Surgery; Biology; Microbiology","score_opus":0.015217209184066141,"score_gpt":0.3053257974514485,"score_spread":0.29010858826738234,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3206667783","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966762,0.0022120646,0.0000034668944,0.0004627857,0.00008620321,0.00044950607,0.00008317023,0.000013498324,0.000013099383],"genre_scores_gemma":[0.997173,0.0024280616,0.0000032182322,0.00022434314,0.00010061851,0.000028888753,0.000023186692,0.000012031645,0.000006629606],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99902546,0.000112092435,0.00039159026,0.0002762499,0.00006744779,0.00012715599],"domain_scores_gemma":[0.9993144,0.00015282005,0.000075308846,0.00012330094,0.000046236815,0.00028793042],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009531846,0.00012807749,0.00041311383,0.00015394251,0.0000277856,0.000016202006,0.000025751227,0.000057184956,0.000019728886],"category_scores_gemma":[0.00008115725,0.00011940638,0.00006922755,0.0001157416,0.00018857849,0.00006067591,0.000043821972,0.00012471751,0.0000010595297],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001912889,0.00030414687,0.9905139,0.000050898932,0.000083773506,0.000037069836,0.00012135785,0.00017129205,0.0025528988,0.00042447125,0.0000035214848,0.0055453423],"study_design_scores_gemma":[0.0036438375,0.00030726937,0.99319243,0.00013235383,0.000050113315,0.000039030623,0.00004238999,0.00012005831,0.00004687733,0.002179652,0.00013226549,0.00011369171],"about_ca_topic_score_codex":0.00023235126,"about_ca_topic_score_gemma":0.0001594848,"teacher_disagreement_score":0.0054316507,"about_ca_system_score_codex":0.000021139978,"about_ca_system_score_gemma":0.00022227914,"threshold_uncertainty_score":0.4869251},"labels":[],"label_agreement":null},{"id":"W3207574179","doi":"10.1016/s0140-6736(21)01737-2","title":"Antibiotic treatment duration for bacteraemic pneumonia","year":2021,"lang":"en","type":"article","venue":"The Lancet","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"","keywords":"Pneumonia; Guideline; Antibiotics; Placebo; Viral pneumonia; Scopus","score_opus":0.049284359583391266,"score_gpt":0.3209107357466321,"score_spread":0.2716263761632408,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3207574179","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9701667,0.00010311999,0.00010842084,0.02602375,0.0002620615,0.0002728551,0.00003359173,0.000060751383,0.0029687774],"genre_scores_gemma":[0.9947714,0.00013936775,0.0000934399,0.001832412,0.0008955815,0.000018806537,0.000049706367,0.000008762349,0.002190483],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.999618,0.000024079916,0.00009076883,0.00009648621,0.00004528268,0.0001254043],"domain_scores_gemma":[0.99958545,0.00004829319,0.00002667742,0.00026425242,0.00004511827,0.000030184006],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000052005482,0.00006024386,0.00017440025,0.000014185475,0.000106094616,0.000017324941,0.000028141007,0.000030145824,0.000045822064],"category_scores_gemma":[0.000039555674,0.00003427163,0.00006680345,0.000072406685,0.00001925989,0.000021260941,0.0000062275612,0.0000461665,0.00004815953],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006761923,0.00017715983,0.046028312,0.000064794884,0.00013117856,0.000032834185,0.00025788028,0.0000097933835,0.94260347,0.0006514723,0.003872295,0.0061031943],"study_design_scores_gemma":[0.0028828196,0.000458262,0.35860908,0.000070102564,0.00023142193,0.0003656772,0.00007696696,0.00025196513,0.07311776,0.00021701331,0.56361324,0.00010568368],"about_ca_topic_score_codex":0.0000022582126,"about_ca_topic_score_gemma":0.00006449382,"teacher_disagreement_score":0.8694857,"about_ca_system_score_codex":0.000035634628,"about_ca_system_score_gemma":0.000069349655,"threshold_uncertainty_score":0.13975565},"labels":[],"label_agreement":null},{"id":"W3209055868","doi":"10.1080/21645515.2021.1976581","title":"Safety, tolerability, and immunogenicity of V114, a 15-valent pneumococcal conjugate vaccine, administered concomitantly with influenza vaccine in healthy adults aged ≥50 years: a randomized phase 3 trial (PNEU-FLU)","year":2021,"lang":"en","type":"article","venue":"Human Vaccines & Immunotherapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Nexus Clinical Research (Canada)","funders":"Merck","keywords":"Tolerability; Immunogenicity; Medicine; Pneumococcal conjugate vaccine; Reactogenicity; Influenza vaccine; Randomized controlled trial; Virology; Live attenuated influenza vaccine; Streptococcus pneumoniae; Vaccination; Immunology; Pediatrics; Adverse effect; Internal medicine; Immune system; Antibiotics; Microbiology; Biology","score_opus":0.029417745175636886,"score_gpt":0.33881525283247904,"score_spread":0.30939750765684215,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3209055868","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9903131,0.0045299437,0.00005039969,0.0008239155,0.00030953894,0.003645291,0.00007467641,0.00011689992,0.00013619251],"genre_scores_gemma":[0.99623215,0.0010281078,0.00011760013,0.0019568997,0.00018141251,0.00021909966,0.00007603417,0.00010787923,0.00008083031],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9944933,0.0009451056,0.002638783,0.0008170539,0.00045228106,0.000653458],"domain_scores_gemma":[0.9966374,0.00060586137,0.00084749504,0.0011482843,0.0004998002,0.00026113735],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001183667,0.0006564426,0.002753447,0.0004053558,0.00025620463,0.00007495068,0.00024882104,0.0003471505,0.0002880187],"category_scores_gemma":[0.00023325943,0.00054424227,0.00049320573,0.0006665764,0.00016481808,0.00019137136,0.000156252,0.00083020516,0.0000076118695],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.838011,0.0036125414,0.026073406,0.00046175954,0.0011186502,0.00016404953,0.0016776584,0.000010969912,0.12740627,0.000115774244,0.000011116327,0.0013367715],"study_design_scores_gemma":[0.8631247,0.009096585,0.11863614,0.0007050972,0.00082723395,0.00040734024,0.00037718026,0.00010465248,0.0032658002,0.00011886435,0.002783094,0.0005532612],"about_ca_topic_score_codex":0.00022066006,"about_ca_topic_score_gemma":0.0010104462,"teacher_disagreement_score":0.12414047,"about_ca_system_score_codex":0.00019393043,"about_ca_system_score_gemma":0.0006531775,"threshold_uncertainty_score":0.9997009},"labels":[],"label_agreement":null},{"id":"W3209316170","doi":"10.2196/16007","title":"Title Correction: Clinical Outcomes of Pneumonia and Other Comorbidities in Children Aged 2-59 Months in Lilongwe, Malawi: Protocol for the Prospective Observational Study “Innovative Treatments in Pneumonia”","year":2019,"lang":"en","type":"erratum","venue":"JMIR Research Protocols","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"National Heart, Lung, and Blood Institute","keywords":"Observational study; Pneumonia; Medicine; Pediatrics; Protocol (science); Alternative medicine; Internal medicine; Pathology","score_opus":0.39033220856665024,"score_gpt":0.587773810232941,"score_spread":0.1974416016662907,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3209316170","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.007040368,0.0000027429446,6.7565054e-7,0.000308667,0.00020159988,0.984828,0.00010363804,0.000022005834,0.00749233],"genre_scores_gemma":[0.002806954,0.0000012996653,0.000007940926,0.000076657874,0.00024102206,0.9399911,0.000027417856,0.000056120563,0.056791455],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9969073,0.0006029607,0.00090340816,0.0005082064,0.00066916423,0.00040899392],"domain_scores_gemma":[0.99793106,0.0008190198,0.00027791303,0.0005115906,0.00039814741,0.00006228255],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016615548,0.0003037939,0.00083187775,0.00062714313,0.00011089942,0.000047565027,0.00024586817,0.0003955482,0.000155168],"category_scores_gemma":[0.00055973924,0.000200002,0.00011905127,0.0009483234,0.00032495343,0.0000952855,0.00015150518,0.0020064823,0.000025345404],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00051944924,0.0031830599,0.9232192,0.00025126906,0.00017485385,0.000010807344,0.00037293727,0.0000015667334,0.000020767138,0.000039506536,0.07167564,0.0005309363],"study_design_scores_gemma":[0.0068277125,0.0029715456,0.9074129,0.0014157114,0.00000851249,0.000006248054,0.0002600408,0.00004242086,0.000008247577,0.000077332545,0.0808212,0.00014812808],"about_ca_topic_score_codex":0.00028763735,"about_ca_topic_score_gemma":0.00080736616,"teacher_disagreement_score":0.049299125,"about_ca_system_score_codex":0.00033649508,"about_ca_system_score_gemma":0.0010524864,"threshold_uncertainty_score":0.8717279},"labels":[],"label_agreement":null},{"id":"W3209694143","doi":"10.7189/jogh.11.04062","title":"External validation of the RISC, RISC-Malawi, and PERCH clinical prediction rules to identify risk of death in children hospitalized with pneumonia","year":2021,"lang":"en","type":"article","venue":"Journal of Global Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Global Health Research","funders":"World Health Organization; Bill and Melinda Gates Foundation","keywords":"Pneumonia; Medicine; Intensive care medicine; Pediatrics; Internal medicine","score_opus":0.019514545520851124,"score_gpt":0.3896683817463236,"score_spread":0.3701538362254725,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3209694143","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99697584,0.0004097821,0.00040242058,0.0015057967,0.0002615312,0.00027273048,0.00008974766,0.0000044644516,0.00007770988],"genre_scores_gemma":[0.99806106,0.0010156046,0.0005351574,0.00021334675,0.00015310897,0.0000015536901,0.0000019559895,0.000006760696,0.00001145974],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99781644,0.00044256236,0.0010004375,0.000144918,0.0004399671,0.00015567402],"domain_scores_gemma":[0.99841464,0.000050082577,0.0007882574,0.00018566022,0.00034799427,0.00021336766],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011210106,0.00010091643,0.00047869227,0.00007172834,0.00007927212,0.000012691294,0.00008050574,0.00008526081,0.000011770611],"category_scores_gemma":[0.00027134735,0.00006198369,0.00015105438,0.00033470604,0.000076450924,0.00009633345,0.00004126557,0.00036608733,0.0000015703931],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020043617,0.0003498568,0.9969036,0.000042412466,0.0001050018,0.0000099676045,0.00008144115,0.00008571751,0.00079051807,0.000038120153,0.00007249605,0.0013204567],"study_design_scores_gemma":[0.00203815,0.0017359972,0.9936516,0.00065607514,0.00016306316,0.0010924131,0.00006313549,0.000020491078,0.00025418692,0.00019920511,0.000082247905,0.000043381722],"about_ca_topic_score_codex":0.00025908925,"about_ca_topic_score_gemma":0.00007698871,"teacher_disagreement_score":0.0032519225,"about_ca_system_score_codex":0.00022291727,"about_ca_system_score_gemma":0.000934328,"threshold_uncertainty_score":0.25276214},"labels":[],"label_agreement":null},{"id":"W3210728492","doi":"10.3390/ani11113096","title":"Comparison of Short- versus Long-Course Antimicrobial Therapy of Uncomplicated Bacterial Pneumonia in Dogs: A Double-Blinded, Placebo-Controlled Pilot Study","year":2021,"lang":"en","type":"article","venue":"Animals","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"University of Missouri","keywords":"Double blinded; Medicine; Placebo; Antimicrobial; Pneumonia; Bacterial pneumonia; Short course; Double blind study; Internal medicine; Double blind; Surgery; Microbiology; Pediatrics; Pathology; Biology","score_opus":0.13076071568177786,"score_gpt":0.4023769994807161,"score_spread":0.2716162837989382,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3210728492","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99672,0.00018943232,0.000005085037,0.00033020752,0.00040501214,0.0017021601,0.000017261571,0.00004288872,0.00058791606],"genre_scores_gemma":[0.9996139,0.00004786897,0.000018941842,0.000048072772,0.00012223623,0.0000737962,0.000017899965,0.000028331431,0.000028944914],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9979634,0.00020422578,0.0009152593,0.00035916726,0.00027268715,0.00028525],"domain_scores_gemma":[0.99874425,0.00018200051,0.00023488386,0.00043016762,0.00031006898,0.00009865245],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032968304,0.00023539105,0.0012541076,0.00019421382,0.00006052843,0.000019995257,0.00013038021,0.000099094745,0.00017411071],"category_scores_gemma":[0.000053636926,0.00019894482,0.0001699254,0.0005554686,0.00010392521,0.00006058517,0.000053689197,0.0002555746,0.000012195554],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.06451589,0.0067189657,0.30429953,0.000023889017,0.00040159674,0.00005570231,0.00028101736,0.00002613346,0.62343967,0.000012918233,0.000052166262,0.00017254388],"study_design_scores_gemma":[0.16153125,0.011401603,0.67952895,0.00012330689,0.00031966256,0.0000329395,0.00051937735,0.000048900874,0.14602031,0.0000027215654,0.00023671066,0.0002342695],"about_ca_topic_score_codex":0.00019786172,"about_ca_topic_score_gemma":0.0011045461,"teacher_disagreement_score":0.47741935,"about_ca_system_score_codex":0.00005393495,"about_ca_system_score_gemma":0.0003792114,"threshold_uncertainty_score":0.8112734},"labels":[],"label_agreement":null},{"id":"W3214300931","doi":"10.14745/ccdr.v47i11a09f","title":"Maladies bactériennes invasives dans le Nord du Canada, 1999 à 2018","year":2021,"lang":"fr","type":"article","venue":"Relevé des maladies transmissibles au Canada","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"University of Alberta; Public Health Agency of Canada","funders":"","keywords":"Haemophilus influenzae; Medicine; Gynecology; Microbiology; Biology; Antibiotics","score_opus":0.012474345153909907,"score_gpt":0.2106735785830324,"score_spread":0.1981992334291225,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3214300931","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7603833,0.13674343,0.0006317205,0.036851,0.009527222,0.00060783233,0.0012929677,0.00013480925,0.053827707],"genre_scores_gemma":[0.86468637,0.056697447,0.00026464902,0.0027028972,0.002126619,0.00007399908,0.00013943264,0.00017887489,0.07312971],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9949465,0.0003649904,0.00096617296,0.0009234155,0.0008044682,0.0019944906],"domain_scores_gemma":[0.99628186,0.0007783583,0.00020722498,0.0007943997,0.00047912096,0.0014590541],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00021744963,0.0008675799,0.0011209643,0.0001619108,0.0017757803,0.00011033253,0.0003806411,0.00034585802,0.0018208073],"category_scores_gemma":[0.00044558872,0.0008858315,0.00034582647,0.0009713771,0.0012056858,0.00034620825,0.00008662526,0.000722726,0.000019919975],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021648925,0.0010319023,0.59891003,0.041077953,0.0047746287,0.041360054,0.0058527617,0.0025429218,0.04929039,0.013756875,0.22293483,0.018251175],"study_design_scores_gemma":[0.0011722542,0.00019878893,0.27553597,0.006047448,0.00066693727,0.0021870153,0.006412655,0.00012903188,0.015776034,0.00009818238,0.69088274,0.0008929507],"about_ca_topic_score_codex":0.9960466,"about_ca_topic_score_gemma":0.99997854,"teacher_disagreement_score":0.4679479,"about_ca_system_score_codex":0.0034630497,"about_ca_system_score_gemma":0.06504869,"threshold_uncertainty_score":0.99952376},"labels":[],"label_agreement":null},{"id":"W3215478730","doi":"10.1002/ejoc.202101170","title":"Improved Synthesis of D‐Isoglutamine: Rapid Access to Desmuramyl Analogues of Muramyl Dipeptide for the Activation of Intracellular NOD2 Receptor and Vaccine Adjuvant Applications","year":2021,"lang":"en","type":"article","venue":"European Journal of Organic Chemistry","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lakehead University","funders":"","keywords":"Muramyl dipeptide; Chemistry; NOD2; Adjuvant; Peptidoglycan; Immunoadjuvant; Stereochemistry; Immunogenicity; Dipeptide; Combinatorial chemistry; Biochemistry; Innate immune system; Immune system; Receptor; Amino acid; In vitro; Enzyme; Biology; Immunology","score_opus":0.01427152154128795,"score_gpt":0.25096942439103564,"score_spread":0.2366979028497477,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3215478730","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9855128,0.0005457663,0.0112000825,0.00224806,0.00004369978,0.00024792703,0.00003342581,0.000007081659,0.00016117285],"genre_scores_gemma":[0.9987233,0.00033257584,0.0005624423,0.00006871241,0.0001926761,0.000005923556,0.000007559212,0.000026465787,0.00008029908],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988967,0.000057391942,0.0006700827,0.00013030603,0.0001428255,0.00010265519],"domain_scores_gemma":[0.9979507,0.0003489064,0.00065862713,0.00028452667,0.0006506481,0.00010659584],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042119224,0.00011489246,0.00037132774,0.000052846204,0.000056588946,0.000011740197,0.00018646556,0.000037590977,0.00018907817],"category_scores_gemma":[0.0009307786,0.000081603874,0.00013170441,0.00030970492,0.000059799866,0.000068797824,0.000069033194,0.00017173719,5.4680146e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000107538915,0.00017362446,0.0013357128,0.00037901965,0.00023021166,0.000003900191,0.00011344408,0.000010183363,0.9826681,0.0000011697464,0.00019600056,0.014781114],"study_design_scores_gemma":[0.00074789545,0.00016228488,0.01373496,0.0002650508,0.00031690442,0.00012665348,0.0003981304,0.000027258897,0.97934306,0.000002608793,0.004806516,0.000068662535],"about_ca_topic_score_codex":7.8215095e-7,"about_ca_topic_score_gemma":5.948045e-7,"teacher_disagreement_score":0.014712451,"about_ca_system_score_codex":0.000031312557,"about_ca_system_score_gemma":0.0001568701,"threshold_uncertainty_score":0.33277094},"labels":[],"label_agreement":null},{"id":"W3215495883","doi":"10.53141/peqacp.2021.5.n1","title":"5 giorni di antibiotico per le polmoniti non complicate sono sufficienti: i risultati di non inferiorità del SAFER RCT","year":2021,"lang":"en","type":"article","venue":"QUADERNI ACP","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Amoxicillin; Randomized controlled trial; Pneumonia; SAFER; Community-acquired pneumonia; Antibiotic therapy; Intensive care medicine; Surgery; Antibiotics; Internal medicine","score_opus":0.024165017947219068,"score_gpt":0.29160662994750447,"score_spread":0.2674416120002854,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3215495883","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97605824,0.00025224176,0.0028290146,0.004226676,0.0005000982,0.00040453466,0.000056739074,0.00017343894,0.015498994],"genre_scores_gemma":[0.9933616,0.00009298717,0.00014636584,0.001443319,0.00033628597,0.000012390883,0.000100207595,0.00006983706,0.0044369935],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9979115,0.000091994596,0.00047163104,0.0005776526,0.0003581441,0.00058905355],"domain_scores_gemma":[0.99849486,0.000118702184,0.00012913224,0.0006327456,0.0002983559,0.00032619556],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00015020928,0.00032805593,0.00053505914,0.0001708013,0.00042017244,0.00009999267,0.00015112078,0.00023727723,0.00036690803],"category_scores_gemma":[0.00013473367,0.0002967412,0.00027444764,0.00041528195,0.00019295058,0.00012602986,0.00012218887,0.00052320387,0.001587674],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046830828,0.0014917348,0.29797757,0.00023343072,0.00018766568,0.0003226074,0.00088887435,0.0000983996,0.6933225,0.00024379967,0.0018431201,0.0033435172],"study_design_scores_gemma":[0.0022672415,0.00041264808,0.8513903,0.00024016248,0.00025681587,0.00038870773,0.0010530457,0.0021906681,0.039099365,0.000025849864,0.10214155,0.0005336178],"about_ca_topic_score_codex":0.0002710685,"about_ca_topic_score_gemma":0.000062962186,"teacher_disagreement_score":0.6542231,"about_ca_system_score_codex":0.000100198624,"about_ca_system_score_gemma":0.00043923676,"threshold_uncertainty_score":0.99994844},"labels":[],"label_agreement":null},{"id":"W3216854271","doi":"10.1002/advs.202104051","title":"Nano‐Enabled Reposition of Proton Pump Inhibitors for TLR Inhibition: Toward A New Targeted Nanotherapy for Acute Lung Injury","year":2021,"lang":"en","type":"article","venue":"Advanced Science","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"Natural Science Foundation of Tianjin Municipal Science and Technology Commission; National Natural Science Foundation of China","keywords":"Nano-; Nanomedicine; Medicine; Pharmacology; Nanotechnology; Materials science; Engineering; Nanoparticle; Chemical engineering","score_opus":0.013744258408703105,"score_gpt":0.32887447092602773,"score_spread":0.31513021251732465,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3216854271","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95169854,0.00017984926,0.040069293,0.0033602081,0.0007226741,0.003547087,0.000052880147,0.000112694135,0.00025677145],"genre_scores_gemma":[0.9839803,0.000073758994,0.012428925,0.0012882919,0.00021359258,0.00088180095,0.00003683018,0.000026844416,0.0010696817],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985274,0.000017460105,0.0003718768,0.000449443,0.00030215154,0.00033164967],"domain_scores_gemma":[0.9986135,0.000051356223,0.00018936639,0.00029275383,0.000685609,0.00016740846],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002543469,0.00014008593,0.0002797571,0.00017542084,0.00032768582,0.000029037938,0.0000765561,0.00007628823,0.000018290248],"category_scores_gemma":[0.00028530322,0.00012235131,0.00015397447,0.0010554548,0.00020903329,0.0004709897,0.000027466516,0.00008512991,0.000001381218],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023678169,0.0001043538,0.0003297249,0.00014106523,0.00002800739,0.000006687332,0.00023319271,0.000037716825,0.99566436,0.00031171282,0.00021690562,0.0026894803],"study_design_scores_gemma":[0.0019983414,0.0008596232,0.00035873667,0.00024786423,0.00007059248,0.000063457126,0.00008433762,0.00025489356,0.9842703,0.00084821077,0.010803127,0.0001405672],"about_ca_topic_score_codex":0.0000037679972,"about_ca_topic_score_gemma":0.0000022458955,"teacher_disagreement_score":0.03228173,"about_ca_system_score_codex":0.0001454575,"about_ca_system_score_gemma":0.0011250387,"threshold_uncertainty_score":0.49893415},"labels":[],"label_agreement":null},{"id":"W3217210502","doi":"10.1016/j.revmed.2021.10.279","title":"Dépistages des troubles cognitifs chez les adultes drépanocytaires avec le test du Montreal Cognitive Assessment (MoCA)","year":2021,"lang":"fr","type":"article","venue":"La Revue de Médecine Interne","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Gynecology; Medicine; Humanities; Psychology; Art","score_opus":0.014733809434417534,"score_gpt":0.2871192623828478,"score_spread":0.27238545294843025,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3217210502","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92390704,0.011185743,0.0059653055,0.018783862,0.0012366939,0.00052520627,0.0005151845,0.00023341998,0.037647564],"genre_scores_gemma":[0.962741,0.0031101352,0.0004935019,0.00087438343,0.002526429,0.00016487991,0.00019348605,0.00012093016,0.029775217],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99660003,0.00061553094,0.00079908385,0.00077806064,0.00031065755,0.00089663564],"domain_scores_gemma":[0.99545574,0.0024964751,0.00027265365,0.00041342946,0.0008514957,0.0005102223],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005003253,0.00060369004,0.00091547787,0.00022601098,0.00039052308,0.0002356332,0.00022540413,0.0004322236,0.0011855663],"category_scores_gemma":[0.0023694953,0.000607221,0.0004600081,0.00047075545,0.0010515432,0.00026520307,0.00023286803,0.00092543475,0.00017502019],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013718905,0.0042786743,0.86295605,0.0011897663,0.0009579751,0.0082789315,0.0022840425,0.000031985,0.039032657,0.003231382,0.0014821582,0.0761392],"study_design_scores_gemma":[0.0072811563,0.0011224997,0.91838676,0.0091620125,0.0013466375,0.0051524118,0.0066385614,0.0013301683,0.029000646,0.000824581,0.019071607,0.0006829448],"about_ca_topic_score_codex":0.0027783008,"about_ca_topic_score_gemma":0.006265955,"teacher_disagreement_score":0.075456254,"about_ca_system_score_codex":0.00048142037,"about_ca_system_score_gemma":0.0009686441,"threshold_uncertainty_score":0.9997275},"labels":[],"label_agreement":null},{"id":"W3217673746","doi":"10.1016/j.vaccine.2021.11.032","title":"Population-based incidence of invasive pneumococcal disease in children and adults in Ontario and British Columbia, 2002–2018: A Canadian Immunization Research Network (CIRN) study","year":2021,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"St. Michael's Hospital; Université de Montréal; Calgary Laboratory Services; Alberta Health Services; Sinai Health System; Toronto Public Health; BC Children's Hospital; University of British Columbia; BC Centre for Disease Control; Hospital for Sick Children; Public Health Ontario","funders":"Department of Family and Community Medicine, University of Toronto; Canadian Immunization Research Network; BC Children's Hospital; Michael Smith Health Research BC; University of Toronto; Canadian Child Health Clinician Scientist Program; Children's Hospital Foundation","keywords":"Incidence (geometry); Medicine; Pneumococcal conjugate vaccine; Vaccination; Poisson regression; Public health; Pneumococcal polysaccharide vaccine; Epidemiology; Population; Demography; Pediatrics; Cohort; Serotype; Pneumococcal disease; Environmental health; Streptococcus pneumoniae; Immunology; Internal medicine; Biology","score_opus":0.012417829042171896,"score_gpt":0.25863595436132486,"score_spread":0.24621812531915296,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3217673746","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984372,0.00034360474,5.498006e-7,0.00028288577,0.00003535294,0.00084852416,0.000015726691,0.0000068449194,0.000029280465],"genre_scores_gemma":[0.9994713,0.00008270268,0.000010300994,0.00011607676,0.000032956803,0.000039292554,0.00010304036,0.000011347713,0.00013294838],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99882483,0.00019188992,0.00028891076,0.00026919116,0.00016317445,0.0002619828],"domain_scores_gemma":[0.9991852,0.00010249787,0.000041852025,0.0002028728,0.0002126274,0.00025494065],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033475572,0.00006935812,0.00023441394,0.00020081582,0.00014247192,0.000049480564,0.000041744275,0.00006319134,0.00017221202],"category_scores_gemma":[0.00048097258,0.000097674936,0.000014984893,0.0008108423,0.000016023005,0.00007938199,0.00004747242,0.00030882668,0.0000011220458],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043504122,0.00027221892,0.9983396,0.000024565024,0.000013966033,0.00021476355,0.00021747117,0.00019822975,0.00010703385,0.0000010627084,0.000064753935,0.000502848],"study_design_scores_gemma":[0.002604997,0.00022935696,0.99625295,0.00044836968,0.00002309777,0.000033096017,0.000120154786,0.00013955902,0.0000023743296,0.000033929846,0.000029820207,0.00008231305],"about_ca_topic_score_codex":0.9843046,"about_ca_topic_score_gemma":0.99984694,"teacher_disagreement_score":0.0155423395,"about_ca_system_score_codex":0.00028049512,"about_ca_system_score_gemma":0.0014387718,"threshold_uncertainty_score":0.39830682},"labels":[],"label_agreement":null},{"id":"W32675265","doi":"10.1155/2005/672501","title":"Epidemiology of Community‐Acquired Pneumonia in Edmonton, Alberta: An Emergency Department‐Based Study","year":2005,"lang":"en","type":"article","venue":"Canadian Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Emergency department; Intensive care unit; Pneumonia; Epidemiology; Community-acquired pneumonia; Emergency medicine; Age groups; Pediatrics; Demography; Internal medicine","score_opus":0.06795424641013979,"score_gpt":0.3505561052988654,"score_spread":0.2826018588887256,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W32675265","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995507,0.0005092214,0.0000181065,0.0016739029,0.00033735408,0.0005099434,0.000016868158,0.000017095428,0.0014105341],"genre_scores_gemma":[0.99379516,0.000010047315,0.000036906094,0.00559161,0.00034710264,0.000035688547,0.000008323943,0.000037888618,0.00013724685],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9957916,0.0018589399,0.0012392389,0.0002090661,0.00020593592,0.00069522293],"domain_scores_gemma":[0.9970655,0.00019220654,0.0003413942,0.0006694278,0.0002491711,0.0014823428],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0020575935,0.00026648553,0.0006771455,0.0010746269,0.0005083769,0.000006676491,0.00030882968,0.00021375706,0.0006323773],"category_scores_gemma":[0.00067262846,0.00024514017,0.00018792652,0.00048569666,0.00011700788,0.00022773886,0.000020709598,0.0008908556,0.00003886059],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005071699,0.00094209437,0.99113554,0.000018072384,0.00008240326,0.00016165955,0.0007599219,0.0004718678,0.0030937665,0.000044653956,0.0006193459,0.002619964],"study_design_scores_gemma":[0.0020240017,0.0019936156,0.9535114,0.00004525269,0.000089428235,0.00014870339,0.00085959025,0.000088463654,0.0001030129,0.00005048372,0.04087829,0.00020774736],"about_ca_topic_score_codex":0.023095863,"about_ca_topic_score_gemma":0.77755773,"teacher_disagreement_score":0.7544618,"about_ca_system_score_codex":0.0007317195,"about_ca_system_score_gemma":0.0018464355,"threshold_uncertainty_score":0.9996526},"labels":[],"label_agreement":null},{"id":"W36216821","doi":"10.1007/0-306-46834-4_8","title":"Etiology of Community-Acquired Pneumonia","year":2006,"lang":"en","type":"article","venue":"Kluwer Academic Publishers eBooks","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Etiology; Medicine; Community-acquired pneumonia; Pneumonia; Streptococcus pneumoniae; Mycoplasma pneumoniae; Internal medicine; Haemophilus influenzae; Sputum; Gastroenterology; Microbiology; Pathology; Antibiotics; Tuberculosis; Biology","score_opus":0.024607513178020065,"score_gpt":0.2865367592413855,"score_spread":0.26192924606336543,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W36216821","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.79329646,0.000062278945,0.000071254224,0.0020830035,0.00038310842,0.00026595284,0.000009429523,0.00017896469,0.20364955],"genre_scores_gemma":[0.9887955,0.0000025439988,0.000044296707,0.002364256,0.00026758653,0.00004228906,0.000035977762,0.00003373917,0.008413808],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99835104,0.00025541705,0.0005739503,0.00017742925,0.00024717135,0.0003950167],"domain_scores_gemma":[0.9988227,0.000147084,0.00020258405,0.00049823243,0.00017510843,0.00015430393],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00055234536,0.00020224252,0.00043984485,0.00032412817,0.0002055365,0.000027563527,0.00029110257,0.0005399492,0.00008498611],"category_scores_gemma":[0.00015542764,0.00017691542,0.00017193618,0.00017969626,0.00048660097,0.00023251366,0.00010658778,0.0012017986,0.000027244656],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006886543,0.00018711947,0.06877803,0.000118980206,0.00012261682,0.000015530275,0.0006977481,0.000013156675,0.8575412,0.0027988562,0.06582332,0.0038345584],"study_design_scores_gemma":[0.0032002153,0.0006265085,0.32011706,0.00014339849,0.00028031712,0.0005260357,0.00083097717,0.000037630787,0.019325282,0.0063681584,0.64805925,0.00048517028],"about_ca_topic_score_codex":0.0003073437,"about_ca_topic_score_gemma":0.000020387291,"teacher_disagreement_score":0.83821595,"about_ca_system_score_codex":0.00008505402,"about_ca_system_score_gemma":0.00018678856,"threshold_uncertainty_score":0.72144014},"labels":[],"label_agreement":null},{"id":"W4200041288","doi":"10.3390/jcm10245727","title":"Early Childhood Pneumonia Is Associated with Reduced Lung Function and Asthma in First Nations Australian Children and Young Adults","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Health and Medical Research Council; Children's Hospital Foundation","keywords":"Medicine; Pneumonia; Asthma; Spirometry; Pediatrics; Incidence (geometry); Logistic regression; Internal medicine","score_opus":0.017919452620481766,"score_gpt":0.32160304061969386,"score_spread":0.3036835879992121,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200041288","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97984856,0.00034503304,0.000009722909,0.018799491,0.0004317104,0.00017956145,0.000006073181,0.000012446508,0.0003674129],"genre_scores_gemma":[0.99761206,0.00062164484,0.000028046134,0.00083206553,0.0006653074,0.0000024649644,0.0000087660255,0.000015817552,0.00021383887],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9980133,0.00013247717,0.0010722326,0.00022814325,0.00038003325,0.00017379335],"domain_scores_gemma":[0.9981597,0.00045194692,0.0005075236,0.00013418472,0.00039256667,0.00035405907],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00077710894,0.00014904098,0.00068736885,0.00026346062,0.00013260737,0.000016575545,0.000041568223,0.00019530051,0.000069057125],"category_scores_gemma":[0.0032432424,0.000099629375,0.00008863026,0.00050185295,0.00019168292,0.00014350191,0.000019594558,0.00085312914,0.0000011807904],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026327028,0.00045716105,0.99471164,0.00002586429,0.00035880707,0.00021340227,0.0004980867,0.0000016156124,0.0005993838,0.000017464317,0.00045768233,0.0023956317],"study_design_scores_gemma":[0.009798965,0.003637004,0.9814499,0.0024538706,0.00037997356,0.0016740288,0.00017214479,0.000017185372,0.000023960933,0.000043313234,0.0002546183,0.00009503622],"about_ca_topic_score_codex":0.00003488418,"about_ca_topic_score_gemma":0.0004929056,"teacher_disagreement_score":0.017967427,"about_ca_system_score_codex":0.000041450032,"about_ca_system_score_gemma":0.00022374465,"threshold_uncertainty_score":0.4062768},"labels":[],"label_agreement":null},{"id":"W4200107977","doi":"10.1093/ofid/ofab466.1497","title":"1305. Antimicrobial Activity of Ceftaroline and Comparator Agents against Ceftriaxone-Non-Susceptible <i>Streptococcus pneumoniae</i> from the United States (2008-2020)","year":2021,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Ceftriaxone; Streptococcus pneumoniae; Antimicrobial; Microbiology; Cephalosporin; Antibiotics; Biology","score_opus":0.01566373430051202,"score_gpt":0.2861016540331732,"score_spread":0.2704379197326612,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200107977","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9924467,0.00018796224,0.00004811516,0.0028674146,0.0003903476,0.0011678467,0.0013292984,0.000093742936,0.0014685309],"genre_scores_gemma":[0.9932677,0.0007825924,0.000009324324,0.004625229,0.00014996577,0.00008730482,0.00084972265,0.000045543835,0.00018259964],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99812,0.00021644688,0.00043617692,0.0005284865,0.00025357684,0.00044531038],"domain_scores_gemma":[0.9981144,0.00027810934,0.00027372476,0.00065532146,0.00032095762,0.00035750167],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00010486814,0.00034669996,0.0006855303,0.0001080444,0.00056311645,0.0001960406,0.00023451212,0.0001277419,0.00024941695],"category_scores_gemma":[0.00014975271,0.0002647726,0.00022095951,0.0007790717,0.00029004383,0.00027772502,0.00046848838,0.00032042956,0.000041210096],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016231852,0.001595852,0.8176525,0.000082351886,0.00049831433,0.00013842054,0.00013889698,0.00047979347,0.14228898,0.000015184027,0.036103737,0.0008435984],"study_design_scores_gemma":[0.012357889,0.0011270622,0.81436825,0.0006334326,0.0014594195,0.00016748534,0.00075926783,0.0018315975,0.062320966,0.00025274686,0.10378347,0.0009383925],"about_ca_topic_score_codex":0.0012077776,"about_ca_topic_score_gemma":0.0007931126,"teacher_disagreement_score":0.07996802,"about_ca_system_score_codex":0.000080140264,"about_ca_system_score_gemma":0.00045498364,"threshold_uncertainty_score":0.99998045},"labels":[],"label_agreement":null},{"id":"W4200208634","doi":"10.1093/ofid/ofab605","title":"Immunogenicity, Safety, and Tolerability of V114, a 15-Valent Pneumococcal Conjugate Vaccine, in Immunocompetent Adults Aged 18–49 Years With or Without Risk Factors for Pneumococcal Disease: A Randomized Phase 3 Trial (PNEU-DAY)","year":2021,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Tolerability; Pneumococcal polysaccharide vaccine; Immunogenicity; Pneumococcal vaccine; Vaccination; Adverse effect; Reactogenicity; Internal medicine; Streptococcus pneumoniae; Serotype; Randomized controlled trial; Immunology; Pneumococcal disease; Antigen; Microbiology","score_opus":0.01564548222050777,"score_gpt":0.3104574104464963,"score_spread":0.2948119282259885,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200208634","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98571664,0.00052362616,0.00014882667,0.0002582497,0.00038294744,0.011457411,0.0011446046,0.00011288339,0.00025480497],"genre_scores_gemma":[0.9968073,0.00062341156,0.000022670121,0.00015454924,0.00007938817,0.0017409474,0.0003193127,0.00008481623,0.00016764224],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9954751,0.0009911333,0.0014684218,0.00095882296,0.0004204495,0.00068606675],"domain_scores_gemma":[0.9963374,0.0011383169,0.00064963335,0.00084049866,0.0003779066,0.000656212],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007836938,0.0006031157,0.0024549766,0.00028194452,0.00041624001,0.00017608915,0.00026796758,0.00017238234,0.0003101436],"category_scores_gemma":[0.001943141,0.00043424018,0.00075502513,0.0005757615,0.00037426053,0.0003674342,0.00039073933,0.0004442525,0.0000052765713],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.5479889,0.0053824135,0.4412262,0.0003000786,0.00082588627,0.00011317376,0.0002598778,0.000077720666,0.0028828455,0.000041946612,0.000027153197,0.00087378506],"study_design_scores_gemma":[0.59092444,0.0036187768,0.40060902,0.00053434825,0.0017416732,0.000063004896,0.0003651372,0.00042178502,0.0004593583,0.00018382698,0.0005875262,0.00049112045],"about_ca_topic_score_codex":0.00068475533,"about_ca_topic_score_gemma":0.0015700777,"teacher_disagreement_score":0.042935506,"about_ca_system_score_codex":0.00022887735,"about_ca_system_score_gemma":0.0012012101,"threshold_uncertainty_score":0.99981093},"labels":[],"label_agreement":null},{"id":"W4200235040","doi":"10.1093/ofid/ofab466.503","title":"301. Detection of Pneumococcal Pneumonia During SARS-CoV-2 Infection","year":2021,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; University of British Columbia Hospital","funders":"","keywords":"Medicine; Streptococcus pneumoniae; Pneumonia; Saliva; Pneumococcal pneumonia; Serotype; Immunology; Pneumococcal infections; Bacterial pneumonia; Internal medicine; Virology; Microbiology; Biology","score_opus":0.018188546422338598,"score_gpt":0.3053088413781461,"score_spread":0.28712029495580754,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200235040","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9848449,0.0001584027,0.00016288362,0.00041477318,0.00070472155,0.00070240133,0.0000407231,0.0002550467,0.012716135],"genre_scores_gemma":[0.9985838,0.00012635402,0.0000056123,0.0004979711,0.00013911769,0.0001724733,0.000039509992,0.000056686364,0.00037846592],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99811965,0.00013669612,0.00051405915,0.0005086489,0.00028876896,0.00043218545],"domain_scores_gemma":[0.99855566,0.000056673678,0.00022908859,0.00056459947,0.00039509844,0.0001989009],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00009319418,0.00029306716,0.00055566366,0.00027308174,0.0005025031,0.00013279975,0.000119150514,0.00017980569,0.00012484018],"category_scores_gemma":[0.00028852752,0.0002865124,0.00037593875,0.0008205556,0.00012794854,0.000500247,0.00028238422,0.0002939615,0.00011512965],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055343215,0.0007164955,0.35737756,0.00012431048,0.000119014236,0.000073022624,0.000022139713,0.000023051396,0.6396049,0.00011221112,0.000047082896,0.0017248249],"study_design_scores_gemma":[0.0015777098,0.0003760478,0.60834926,0.00012490344,0.0002615233,0.0006396325,0.000043299704,0.000035052675,0.38268265,0.00032309638,0.0053624907,0.00022433135],"about_ca_topic_score_codex":0.00034683693,"about_ca_topic_score_gemma":0.000836974,"teacher_disagreement_score":0.2569223,"about_ca_system_score_codex":0.00023013199,"about_ca_system_score_gemma":0.0003520898,"threshold_uncertainty_score":0.9999587},"labels":[],"label_agreement":null},{"id":"W4200278089","doi":"10.1093/ofid/ofab466.155","title":"155. <i>In Vitro</i> Evaluation of Delafloxacin Activity Against Contemporary US Isolates from Community-Acquired Pneumonia and Community-Acquired Lower Respiratory Tract Infections: Results from the SENTRY Antimicrobial Surveillance Program (2014-2020)","year":2021,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Microbiology; Medicine; Streptococcus pneumoniae; Broth microdilution; Moxifloxacin; Klebsiella pneumoniae; Moraxella catarrhalis; Ciprofloxacin; Respiratory tract infections; Haemophilus influenzae; Community-acquired pneumonia; Pneumonia; Antimicrobial; Antibiotics; Biology; Internal medicine; Minimum inhibitory concentration; Escherichia coli; Respiratory system","score_opus":0.03527809555504659,"score_gpt":0.3137298346831037,"score_spread":0.27845173912805715,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200278089","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98971635,0.0009167769,0.00001033824,0.0011421159,0.0005834987,0.0024874173,0.0029488734,0.00020058772,0.0019940652],"genre_scores_gemma":[0.9954581,0.0002483292,0.000014356159,0.0022171822,0.00012298336,0.00031234248,0.0015445112,0.0000676093,0.000014544557],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.990824,0.0067837243,0.0009313983,0.00055780396,0.00043845337,0.0004646346],"domain_scores_gemma":[0.9945971,0.0023213818,0.0006036181,0.0015599866,0.0006497026,0.00026821552],"candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.0019057164,0.0004870289,0.000952152,0.0001491705,0.0016289623,0.00033395897,0.0003869423,0.00030085366,0.000048142327],"category_scores_gemma":[0.0018290802,0.0004227495,0.0002896552,0.0007291612,0.00054021867,0.00074394076,0.0006197044,0.0009779024,0.000015906891],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012294162,0.010897516,0.68183523,0.000059018537,0.00047864876,0.000055916484,0.00058677484,0.00018614167,0.29627353,0.0000021476214,0.0015275129,0.0068681673],"study_design_scores_gemma":[0.011181508,0.0010125083,0.96981835,0.00047431482,0.00048538172,0.000049678736,0.0011406294,0.0007137848,0.010939949,0.00019463722,0.003453089,0.0005361748],"about_ca_topic_score_codex":0.011198269,"about_ca_topic_score_gemma":0.008249769,"teacher_disagreement_score":0.28798312,"about_ca_system_score_codex":0.0002923264,"about_ca_system_score_gemma":0.001266587,"threshold_uncertainty_score":0.99982244},"labels":[],"label_agreement":null},{"id":"W4200416139","doi":"10.1093/ofid/ofab466.1463","title":"1271. <i>In vitro</i> Activities of Ceftaroline and Comparator Agents Against Bacterial Pathogens Frequently Causing Community-Acquired Respiratory Tract Infections in Patients from a Global Population: ATLAS Surveillance Program 2016-2019","year":2021,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Moraxella catarrhalis; Medicine; Streptococcus pneumoniae; Haemophilus influenzae; Microbiology; Staphylococcus aureus; Broth microdilution; Respiratory tract infections; Population; Bacterial pneumonia; Pneumonia; Internal medicine; Antibiotics; Biology; Minimum inhibitory concentration; Respiratory system; Bacteria","score_opus":0.019135245853563552,"score_gpt":0.3022742452416747,"score_spread":0.2831389993881111,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200416139","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948439,0.00021361363,0.000004240064,0.0000935722,0.0005165448,0.0013152838,0.002150387,0.00009243128,0.0007700476],"genre_scores_gemma":[0.99731654,0.000055074353,0.000023113054,0.0005476916,0.000082503495,0.00015718715,0.0017718325,0.000034495904,0.0000115421735],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99744487,0.0007578416,0.0007105192,0.00040574357,0.00025923157,0.00042178293],"domain_scores_gemma":[0.99857646,0.00017539941,0.00031122906,0.0005047122,0.000181376,0.00025081268],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00017545515,0.00033172077,0.000806121,0.0001852366,0.00038810112,0.00016150445,0.00011689395,0.0001735308,0.000056019875],"category_scores_gemma":[0.00021791761,0.00034033865,0.00016082214,0.0006717542,0.00016287601,0.00054428674,0.00026266652,0.0002754863,0.000005040034],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033090523,0.0073031555,0.97670275,0.00006158611,0.000109027824,0.000051743194,0.00009105547,0.00008832884,0.012656167,0.0000100090565,0.00025104062,0.0023442507],"study_design_scores_gemma":[0.006758078,0.00065151765,0.98959106,0.0002497148,0.00009005118,0.000018620198,0.00018041082,0.000055825694,0.00063492445,0.00009987953,0.0013616465,0.00030828678],"about_ca_topic_score_codex":0.0040398664,"about_ca_topic_score_gemma":0.0068684537,"teacher_disagreement_score":0.012888314,"about_ca_system_score_codex":0.0004298632,"about_ca_system_score_gemma":0.0004236627,"threshold_uncertainty_score":0.9999049},"labels":[],"label_agreement":null},{"id":"W4200438338","doi":"10.1093/ofid/ofab466.1244","title":"1050. Phase 3 Trial to Evaluate the Safety, Tolerability, and Immunogenicity of V114 Followed by 23valent Pneumococcal Polysaccharide Vaccine 6 Months Later in At-risk Adults Aged 18–49 Years (PNEU-DAY): A Subgroup Analysis by Baseline Risk Factors","year":2021,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Pneumococcal polysaccharide vaccine; Tolerability; Pneumococcal conjugate vaccine; Immunogenicity; Adverse effect; Vaccination; Internal medicine; Pneumococcal vaccine; Streptococcus pneumoniae; Immunology; Pediatrics; Pneumococcal disease; Immune system","score_opus":0.010337051663773524,"score_gpt":0.3007900164486744,"score_spread":0.2904529647849009,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200438338","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99200207,0.0007352762,0.00007747243,0.0008705721,0.00026967356,0.0029495708,0.002920923,0.00006618967,0.00010826265],"genre_scores_gemma":[0.9978586,0.0005976237,0.0000033903455,0.00040547445,0.00005052073,0.0003138011,0.0005148693,0.00005012166,0.00020558712],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9955396,0.0012442699,0.0012031653,0.00089221646,0.0005272435,0.000593471],"domain_scores_gemma":[0.99736345,0.00053015974,0.00038772504,0.0009830174,0.00022513905,0.0005104933],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0013397916,0.00046997512,0.0012890947,0.00031951224,0.0005133733,0.00013019648,0.00030820962,0.00017724917,0.0009942637],"category_scores_gemma":[0.0012195281,0.00035073352,0.0007345827,0.0014880074,0.00010601731,0.00023527937,0.00064761343,0.00044315774,0.000018155808],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.011454442,0.0038101766,0.94300854,0.000034298955,0.0016465704,0.000038370243,0.00034205036,0.00022190729,0.03588656,0.0000013073685,0.0018777087,0.0016780599],"study_design_scores_gemma":[0.06750388,0.0024533495,0.9148832,0.00009286416,0.005600728,0.000014429948,0.00031605855,0.0008044976,0.00614972,0.0000475053,0.0016230727,0.00051071786],"about_ca_topic_score_codex":0.007814161,"about_ca_topic_score_gemma":0.012887204,"teacher_disagreement_score":0.056049436,"about_ca_system_score_codex":0.00034769892,"about_ca_system_score_gemma":0.00022314915,"threshold_uncertainty_score":0.99991894},"labels":[],"label_agreement":null},{"id":"W4200450327","doi":"10.3791/50490-v","title":"Characterization of Inflammatory Responses During Intranasal Colonization with &lt;em&gt;Streptococcus pneumoniae&lt;/em&gt;","year":2014,"lang":"en","type":"article","venue":"Journal of Visualized Experiments","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Streptococcus pneumoniae; Colonization; Microbiology; Immune system; Biology; Nasal administration; Pathogen; Pneumonia; Pneumococcal infections; Pneumolysin; Respiratory tract; Immunology; Virulence; Meningitis; Inflammation; Antibiotics; Medicine; Respiratory system; Gene","score_opus":0.014172169071149519,"score_gpt":0.33409142911125284,"score_spread":0.3199192600401033,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200450327","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99741876,0.00005782698,0.0014062608,0.00014422939,0.00036619933,0.00042416976,0.000006542219,0.000044512683,0.00013149816],"genre_scores_gemma":[0.99896497,0.00008145658,0.00014346365,0.00014984354,0.00034310433,0.000025339315,0.000014109144,0.000051754185,0.00022595817],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975393,0.00029459468,0.0009950764,0.00020652839,0.00069384836,0.00027069275],"domain_scores_gemma":[0.9977278,0.000064634274,0.0010970574,0.0002641413,0.0006025662,0.00024379225],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004413073,0.00025594182,0.00062077027,0.0005365965,0.00016628957,0.00004622276,0.00013172334,0.00016321968,0.00009504498],"category_scores_gemma":[0.00019476961,0.00020146873,0.00015968627,0.000358012,0.00010092785,0.00036621053,0.00003471496,0.00023669124,0.000009121559],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015643985,0.00046798633,0.03212276,0.00010839674,0.00023593313,0.00005779464,0.0019333635,0.000026049576,0.9630963,0.00006006818,0.000026630516,0.00030032353],"study_design_scores_gemma":[0.0061944844,0.0020438135,0.23168643,0.0006181251,0.00017987404,0.00026618986,0.0002484226,0.00013563091,0.7538414,0.000007157738,0.0045585553,0.00021992775],"about_ca_topic_score_codex":8.6194495e-7,"about_ca_topic_score_gemma":0.0000029840655,"teacher_disagreement_score":0.2092549,"about_ca_system_score_codex":0.00016290383,"about_ca_system_score_gemma":0.00024778137,"threshold_uncertainty_score":0.8215657},"labels":[],"label_agreement":null},{"id":"W4200470952","doi":"10.1093/ofid/ofab466.1403","title":"1211. Incidence of All-Cause Community-Acquired Pneumonia in Ontario and British Columbia, Canada, 2002-2018; a Canadian Immunization Research Network (CIRN) study","year":2021,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Montréal; Institute for Clinical Evaluative Sciences; University of Calgary; BC Centre for Disease Control; Hospital for Sick Children; University of British Columbia; Public Health Ontario; University Health Network; SickKids Foundation; University of Toronto","funders":"","keywords":"Medicine; Incidence (geometry); Population; Demography; Community-acquired pneumonia; Pneumococcal conjugate vaccine; Poisson regression; Pneumonia; Confidence interval; Pediatrics; Streptococcus pneumoniae; Environmental health; Internal medicine","score_opus":0.04325388069734064,"score_gpt":0.3123821418017891,"score_spread":0.26912826110444843,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200470952","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99008554,0.00034538872,9.300465e-7,0.0004605798,0.00022754906,0.0013727709,0.000088664594,0.000021648142,0.007396915],"genre_scores_gemma":[0.9963876,0.00013947522,0.000004132758,0.0009872109,0.000025400674,0.00017432935,0.000112566704,0.0000328435,0.0021364524],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9972755,0.0008795044,0.00045408504,0.00032095276,0.00038398174,0.0006859981],"domain_scores_gemma":[0.99786043,0.00024251154,0.00010210466,0.0006534379,0.0005874908,0.00055404723],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006214963,0.00014833082,0.00047013845,0.00014637248,0.0012802484,0.0004516265,0.0002644099,0.00010220213,0.00067456806],"category_scores_gemma":[0.0005482318,0.00021858218,0.000042603493,0.001017142,0.0001816733,0.00029255316,0.0005167684,0.0005887823,0.0000052494834],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018247592,0.0009456764,0.98921376,0.00003386218,0.00021028769,0.0007123946,0.00038750828,0.00006911693,0.000113930364,0.000014595936,0.0076039145,0.00067671214],"study_design_scores_gemma":[0.0015127363,0.00059838616,0.9815142,0.00026732494,0.00015415132,0.00023911223,0.0025948132,0.000016497559,0.000004135194,0.00019328287,0.012706575,0.0001987761],"about_ca_topic_score_codex":0.9999143,"about_ca_topic_score_gemma":0.99999964,"teacher_disagreement_score":0.009031171,"about_ca_system_score_codex":0.0015590283,"about_ca_system_score_gemma":0.010590199,"threshold_uncertainty_score":0.99501884},"labels":[],"label_agreement":null},{"id":"W4200562121","doi":"10.1093/ofid/ofab466.1517","title":"1325. Recalibrating Estimates of Pneumococcal Disease in Hospitalized Canadian adults from 2010 to 2017 with Use of an Extended Spectrum Serotype-specific Urine Antigen Detection","year":2021,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Saint John Regional Hospital; Ottawa Hospital; McMaster University; Public Health Ontario; Mount Sinai Hospital; Vancouver General Hospital; University of British Columbia; Université de Sherbrooke; University of Toronto; Dalhousie University; Izaak Walton Killam Health Centre; Saskatchewan Health; Centre hospitalier universitaire de Québec; Nova Scotia Health Authority; Saskatchewan Health Authority; McGill University Health Centre; Public Health Agency of Canada","funders":"","keywords":"Medicine; Streptococcus pneumoniae; Serotype; Sputum; Pneumonia; Internal medicine; Pneumococcal pneumonia; Cohort; Community-acquired pneumonia; Pneumococcal disease; Pneumococcal conjugate vaccine; Pediatrics; Immunology; Tuberculosis; Pathology; Antibiotics; Microbiology","score_opus":0.016798279780076347,"score_gpt":0.2658519008999366,"score_spread":0.24905362111986026,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200562121","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967055,0.00012041219,0.00008440736,0.00059690734,0.00021514061,0.0012362195,0.0005330719,0.000064394044,0.00044400242],"genre_scores_gemma":[0.99897796,0.000060114846,0.00018082568,0.00023013126,0.00004939262,0.00012700896,0.00026849238,0.000051001603,0.00005505517],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99821347,0.00011038918,0.00047115205,0.0005485221,0.00023003753,0.00042641748],"domain_scores_gemma":[0.99788207,0.0000872169,0.00018778259,0.0006798382,0.000212008,0.000951074],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00006503345,0.0002740786,0.00056770066,0.00035484348,0.00020616938,0.00012988871,0.00014926952,0.00009649236,0.00028299808],"category_scores_gemma":[0.0002754782,0.00024528804,0.00012089799,0.0006594424,0.00010327008,0.0006591904,0.00011795265,0.00017675471,0.000013613141],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008480494,0.0010157779,0.976552,0.00006844459,0.00010683787,0.00041569007,0.00008998375,0.00053502084,0.018706633,0.00005796473,0.00007344824,0.0015301335],"study_design_scores_gemma":[0.002195097,0.0010044504,0.9814963,0.0005554044,0.00012992337,0.000032738382,0.00011992137,0.0006734797,0.012499304,0.0003582652,0.00064595364,0.00028918768],"about_ca_topic_score_codex":0.08763426,"about_ca_topic_score_gemma":0.2979366,"teacher_disagreement_score":0.21030232,"about_ca_system_score_codex":0.00015352694,"about_ca_system_score_gemma":0.0008208349,"threshold_uncertainty_score":0.99999994},"labels":[],"label_agreement":null},{"id":"W4200579072","doi":"10.1093/ofid/ofab466.1501","title":"1309. Incidence and Epidemiology of Invasive Pneumococcal Disease due to Serotype 3 in South-Central Ontario","year":2021,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Toronto Public Health; Public Health Agency of Canada; William Osler Health System; University Health Network; University of Toronto; The Scarborough Hospital; North York General Hospital; Sinai Health System","funders":"Medical Center, University of Rochester; National Institutes of Health; Shionogi; Pfizer; Meiji Seika Pharma; University of Queensland; National University of Singapore; Medpace; Tufts Medical Center; North Bristol NHS Trust; University of Texas Southwestern Medical Center; Nabriva Therapeutics; Wayne State University","keywords":"Medicine; Epidemiology; Incidence (geometry); Population; Bacteremia; Pneumonia; Pneumococcal disease; Pediatrics; Pneumococcal infections; Internal medicine; Streptococcus pneumoniae; Antibiotics; Environmental health","score_opus":0.024380057663159437,"score_gpt":0.30503087313993066,"score_spread":0.28065081547677123,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200579072","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953418,0.00032153557,0.00005120643,0.0017308622,0.00022240337,0.00085678656,0.00007068439,0.000033136304,0.0013715975],"genre_scores_gemma":[0.99571854,0.00003285522,0.000024435514,0.0036388452,0.00004224331,0.0001575281,0.00003890258,0.000020008509,0.0003266514],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982851,0.00020569493,0.00044704054,0.00047163418,0.00012257372,0.00046793398],"domain_scores_gemma":[0.9982485,0.0003134065,0.00012020636,0.00038379998,0.00014949242,0.0007845892],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014608477,0.0002044697,0.0006414388,0.00016036966,0.00013688848,0.000025150815,0.00012695976,0.000090474816,0.0003063342],"category_scores_gemma":[0.0020386355,0.00018778082,0.00013071403,0.00036772387,0.00013871609,0.00019814173,0.00041332975,0.0002235203,0.000034048055],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017033344,0.0005099922,0.99571973,0.0000947957,0.00006188212,0.00054913224,0.00041105572,0.00016458392,0.001163733,0.0007329763,0.00015086976,0.00027088923],"study_design_scores_gemma":[0.0012151301,0.00037006775,0.99449503,0.00028244086,0.00014216067,0.0001356045,0.00020213725,0.000014933,0.00018159651,0.0016476986,0.0011224077,0.00019080582],"about_ca_topic_score_codex":0.0039199926,"about_ca_topic_score_gemma":0.06974926,"teacher_disagreement_score":0.06582927,"about_ca_system_score_codex":0.00023153532,"about_ca_system_score_gemma":0.001714493,"threshold_uncertainty_score":0.9472254},"labels":[],"label_agreement":null},{"id":"W4205347208","doi":"10.1016/s2213-2600(21)00502-6","title":"Non-typeable Haemophilus influenzae–Moraxella catarrhalis vaccine for the prevention of exacerbations in chronic obstructive pulmonary disease: a multicentre, randomised, placebo-controlled, observer-blinded, proof-of-concept, phase 2b trial","year":2022,"lang":"en","type":"article","venue":"The Lancet Respiratory Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut universitaire de cardiologie et de pneumologie de Québec; Cegep regional de Lanaudiere","funders":"Mylan; UK Research and Innovation; Sunovion; Grifols; Boston Scientific Corporation; Sanofi; Regeneron Pharmaceuticals; Teva Pharmaceutical Industries; AstraZeneca; Amgen","keywords":"Pulmonary disease; Haemophilus influenzae; Clinical trial; MEDLINE; Respiratory tract infections; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score_opus":0.06649055409681909,"score_gpt":0.35243343228910445,"score_spread":0.28594287819228537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4205347208","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95871973,0.0132258665,0.000491343,0.0053020837,0.0010499319,0.020275539,0.00026561276,0.00005982221,0.0006100946],"genre_scores_gemma":[0.99253213,0.00008012326,0.000016080565,0.00074094004,0.0020080763,0.004079559,0.000084928826,0.000046924804,0.00041121116],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.996547,0.0005893667,0.0012998754,0.00042792442,0.00066069234,0.0004751321],"domain_scores_gemma":[0.9963404,0.0013619049,0.0008351787,0.0010057898,0.0002878907,0.00016882968],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023415242,0.00033721805,0.0014110077,0.00029797293,0.00049685023,0.000008708224,0.00046370435,0.00009358638,0.00032740872],"category_scores_gemma":[0.0011705625,0.00019748544,0.0003836682,0.00085315877,0.00035588036,0.00012651541,0.00012581787,0.0006340821,0.0000013797599],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.9279068,0.00221619,0.0025420783,0.0008488197,0.0009579456,0.000084151136,0.002131272,0.024653504,0.025751723,0.00038092805,0.0029993115,0.009527257],"study_design_scores_gemma":[0.93384916,0.004675042,0.005727861,0.0004249951,0.0020472023,0.000031063297,0.0013973247,0.0113549065,0.002455631,0.00038279724,0.037355915,0.0002981013],"about_ca_topic_score_codex":0.00016800997,"about_ca_topic_score_gemma":0.00014501058,"teacher_disagreement_score":0.0343566,"about_ca_system_score_codex":0.0004361688,"about_ca_system_score_gemma":0.0011020689,"threshold_uncertainty_score":0.80532223},"labels":[],"label_agreement":null},{"id":"W4205621121","doi":"10.1016/j.ijid.2022.01.026","title":"Induced sputum as an adequate clinical specimen for the etiological diagnosis of community-acquired pneumonia (CAP) in children and adolescents","year":2022,"lang":"en","type":"article","venue":"International Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Universidad de Antioquia; Departamento Administrativo de Ciencia, Tecnología e Innovación (COLCIENCIAS)","keywords":"Sputum; Medicine; Pneumonia; Community-acquired pneumonia; Etiology; Gram staining; Population; Microbiological culture; Pcr test; Pediatrics; Hypoxemia; Internal medicine; Pathology; Polymerase chain reaction; Microbiology; Tuberculosis; Bacteria; Antibiotics; Biology","score_opus":0.03880656607823409,"score_gpt":0.36815825320388357,"score_spread":0.3293516871256495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4205621121","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974057,0.00018463949,0.000026277143,0.0011345188,0.0007782095,0.0003365926,0.00008658219,0.000012981067,0.000034470337],"genre_scores_gemma":[0.9981432,0.00022053477,0.00000371755,0.0011533796,0.0003816144,0.000060699345,0.000017803457,0.000012295687,0.000006773727],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99830204,0.0004937046,0.000634097,0.00010137391,0.00034639932,0.00012235658],"domain_scores_gemma":[0.9984786,0.00052397855,0.00041979528,0.00014926991,0.00028501358,0.00014332337],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006138431,0.0001110114,0.00029866182,0.0002414496,0.0002044279,0.0000243599,0.00025064993,0.000051921994,0.00010396428],"category_scores_gemma":[0.00063188205,0.00007892356,0.00023242318,0.00012354944,0.00014294498,0.00011288212,0.00014127059,0.00047191474,0.0000012074969],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004330329,0.002745004,0.98682535,0.000007344836,0.00039747314,0.000027027772,0.00017555934,0.000111714035,0.00064539333,0.00011305992,0.00011850893,0.008400507],"study_design_scores_gemma":[0.0029454124,0.003065897,0.99168456,0.000066449604,0.0001749292,0.0006042635,0.00033175625,0.000038873914,0.000061680745,0.0006173302,0.00033457906,0.00007428694],"about_ca_topic_score_codex":0.00012696446,"about_ca_topic_score_gemma":0.000020822115,"teacher_disagreement_score":0.00832622,"about_ca_system_score_codex":0.00010778692,"about_ca_system_score_gemma":0.00014804293,"threshold_uncertainty_score":0.32184094},"labels":[],"label_agreement":null},{"id":"W4205833073","doi":"10.1007/978-3-030-22009-9_550","title":"Consequences of Pneumonia in Older Adults","year":2021,"lang":"en","type":"book-chapter","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Health Sciences North","funders":"","keywords":"Pneumonia; Medicine; Intensive care medicine; Internal medicine","score_opus":0.017212814766124837,"score_gpt":0.26345811100116145,"score_spread":0.2462452962350366,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4205833073","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.021210235,0.00066079054,0.000003900834,0.0010947332,0.00023918317,0.00033923998,0.000018752182,0.00003820398,0.97639495],"genre_scores_gemma":[0.27602258,0.00058269093,0.000036670594,0.0008292025,0.00010036384,0.000012382414,0.000030135712,0.000033509918,0.72235245],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","domain_scores_codex":[0.9990407,0.0000101813375,0.0003830738,0.00025126524,0.00018885551,0.00012587637],"domain_scores_gemma":[0.99934965,0.000048081994,0.00011332556,0.00026878717,0.00014092741,0.00007923556],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000055266617,0.00018340534,0.0005074287,0.0002271425,0.000017841812,0.000004329542,0.000047623325,0.0003156315,0.002870536],"category_scores_gemma":[0.000027791031,0.00014520853,0.00016767431,0.00004497071,0.00019654774,0.000020496236,0.000027725013,0.00033425793,0.00006727924],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031897242,0.0014338619,0.059405137,0.0058696596,0.0015108403,0.008916444,0.0016038849,0.000011075809,0.37747493,0.50014234,0.0065929675,0.036719855],"study_design_scores_gemma":[0.008565499,0.0016765932,0.08808423,0.028596815,0.000973569,0.0027707012,0.0007777709,0.000017863695,0.03402841,0.00499299,0.8275073,0.0020082342],"about_ca_topic_score_codex":0.000057558867,"about_ca_topic_score_gemma":0.00019166597,"teacher_disagreement_score":0.8209143,"about_ca_system_score_codex":0.000043314554,"about_ca_system_score_gemma":0.00035108835,"threshold_uncertainty_score":0.998041},"labels":[],"label_agreement":null},{"id":"W4206441463","doi":"10.21065/19257430.153.1","title":"PNEUMONIA THERAPY OF AN INFANT ADMITTED IN A LOCAL HOSPITAL OF RAWALPINDI, PAKISTAN; A CASE REPORT","year":2011,"lang":"en","type":"article","venue":"Canadian Journal of Applied Sciences","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Pneumonia; Medicine; Antibiotic therapy; Intensive care medicine; Pediatrics; Antibiotics; Internal medicine; Microbiology","score_opus":0.027620172139482483,"score_gpt":0.28454094373755623,"score_spread":0.25692077159807375,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4206441463","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961245,0.0000926577,0.000027978625,0.00010786949,0.00015488443,0.0001698194,0.000005991424,0.0000027447174,0.0033135256],"genre_scores_gemma":[0.9995913,0.000008600071,0.00024028684,0.000111420035,0.00003357811,0.0000029968344,4.1028713e-7,0.000006129316,0.0000053057283],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987097,0.000025219695,0.00064895226,0.00014094872,0.00023754554,0.0002376803],"domain_scores_gemma":[0.9986595,0.000023484963,0.00044831017,0.00016453677,0.00017170398,0.0005324871],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00079175975,0.000098421726,0.00033209796,0.00062581146,0.00009846635,0.000010294651,0.00016086121,0.00007135543,0.000077382836],"category_scores_gemma":[0.000037806665,0.00007192814,0.00008103382,0.0006740116,0.0007385138,0.00011709345,0.0000054978645,0.00020026907,7.1041455e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039640343,0.0009718757,0.6494136,0.00007839888,0.0002217349,0.18926011,0.033771504,0.00017040168,0.096749574,0.0031022597,0.00010359335,0.025760587],"study_design_scores_gemma":[0.0034482102,0.007953257,0.82558733,0.0002990053,0.00007787355,0.09478668,0.02182202,0.00014324773,0.04134322,0.0013109521,0.0028074114,0.00042079898],"about_ca_topic_score_codex":0.009084073,"about_ca_topic_score_gemma":0.026708053,"teacher_disagreement_score":0.17617376,"about_ca_system_score_codex":0.00006816186,"about_ca_system_score_gemma":0.0032792059,"threshold_uncertainty_score":0.99751455},"labels":[],"label_agreement":null},{"id":"W4206578657","doi":"10.1016/j.vaccine.2021.12.065","title":"A population-based analysis to determine the impact of the 13-valent pneumococcal conjugate vaccine on community-acquired pneumonia in British Columbia, Canada","year":2022,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"Pfizer Canada","keywords":"Pneumococcal conjugate vaccine; Medicine; Incidence (geometry); Pneumonia; Pediatrics; Immunization; Pneumococcal pneumonia; Population; Community-acquired pneumonia; Streptococcus pneumoniae; Internal medicine; Immunology; Environmental health; Antibiotics","score_opus":0.013273605380874789,"score_gpt":0.2620631367762056,"score_spread":0.24878953139533078,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4206578657","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951617,0.000026955362,0.0000026072896,0.003334196,0.00017189926,0.00092504336,0.00028888797,0.000028247674,0.000060449343],"genre_scores_gemma":[0.99723536,0.0000029368923,0.0000023497303,0.0021398487,0.000044642242,0.00017203749,0.00009333239,0.000028159066,0.00028134225],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9976903,0.0006627659,0.0006123634,0.0002443618,0.00044879716,0.00034136442],"domain_scores_gemma":[0.9981977,0.000335067,0.00022137056,0.0009626266,0.00011481607,0.00016843743],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005103721,0.00017572277,0.00061341934,0.00022382282,0.0008041718,0.000041821873,0.00037765616,0.000046418463,0.00061138876],"category_scores_gemma":[0.00022646139,0.0001518196,0.0003677099,0.0025068617,0.000010573503,0.000028549686,0.0001768343,0.000551604,0.0000015442141],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009217678,0.00043408043,0.94733995,0.000018057775,0.00030592157,0.00004048519,0.00008629635,0.038278695,0.012107685,4.449639e-7,0.00081784045,0.00047838187],"study_design_scores_gemma":[0.0017869084,0.0008407253,0.99269736,0.00005078439,0.00036177697,0.000058401765,0.00014482714,0.0031375932,0.000113675575,0.000006918108,0.00064903067,0.00015201399],"about_ca_topic_score_codex":0.9571982,"about_ca_topic_score_gemma":0.992296,"teacher_disagreement_score":0.04535741,"about_ca_system_score_codex":0.00086314074,"about_ca_system_score_gemma":0.0006293266,"threshold_uncertainty_score":0.6694278},"labels":[],"label_agreement":null},{"id":"W4210242399","doi":"10.1093/jac/dkac034","title":"PCV-15 and PPSV-23 coverage of invasive and respiratory tract <i>Streptococcus pneumoniae</i>, including MDR and XDR isolates: CANWARD 2007–20","year":2022,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Sciences Centre; Public Health Agency of Canada; University of Manitoba","funders":"","keywords":"Streptococcus pneumoniae; Levofloxacin; Penicillin; Microbiology; Serotype; Respiratory tract infections; Medicine; Trimethoprim; Pneumococcal infections; Sulfamethoxazole; Biology; Respiratory system; Virology; Antibiotics; Internal medicine","score_opus":0.01896406662479397,"score_gpt":0.27066625903449754,"score_spread":0.25170219240970354,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210242399","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954835,0.0010509194,0.000027609567,0.0025843699,0.00026172935,0.000314402,0.00005590195,0.000014811369,0.00020675929],"genre_scores_gemma":[0.9912884,0.0025747635,0.000051820163,0.0057216203,0.00024581302,0.0000038104956,0.0000027454541,0.000041825286,0.00006920062],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99849045,0.00011416079,0.0006717912,0.00024100277,0.0002312381,0.00025135168],"domain_scores_gemma":[0.99868554,0.00015071545,0.0006251972,0.00016226702,0.00016061722,0.00021564399],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047791045,0.00024212948,0.0006639257,0.00032272222,0.00031104125,0.000041353836,0.00009798482,0.000098303724,0.00009474426],"category_scores_gemma":[0.000058084377,0.00021311715,0.00014925314,0.00022421006,0.00021321459,0.00020252573,0.000087691806,0.0006424141,7.320284e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026525694,0.00025940101,0.16253465,0.00012486069,0.00018000837,0.00011389847,0.00087294896,0.000026728369,0.83113116,0.000005717983,0.0035665652,0.0009188049],"study_design_scores_gemma":[0.03162573,0.0103714,0.21944542,0.0014162628,0.00086814736,0.015522043,0.0018302512,0.00008129458,0.44141194,0.00032142128,0.27570054,0.0014055261],"about_ca_topic_score_codex":0.000018760113,"about_ca_topic_score_gemma":0.000010658933,"teacher_disagreement_score":0.3897192,"about_ca_system_score_codex":0.00009702482,"about_ca_system_score_gemma":0.0003416553,"threshold_uncertainty_score":0.8690665},"labels":[],"label_agreement":null},{"id":"W4210294285","doi":"10.1097/inf.0000000000003454","title":"Clinical Presentations and Outcomes of Children in Canada With Recurrent Invasive Pneumococcal Disease From the IMPACT Surveillance Network","year":2022,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Children's Hospital of Winnipeg; Janeway Children's Health and Rehabilitation Centre; Nova Scotia Health Authority; Stollery Children's Hospital; Alberta Children's Hospital; Izaak Walton Killam Health Centre; University of Alberta; Public Health Agency of Canada; University of British Columbia; Hospital for Sick Children; Centre Hospitalier Universitaire Sainte-Justine; Dalhousie University; Montreal Children's Hospital; University of Toronto; BC Children's Hospital; University of Calgary; Children's Hospital of Eastern Ontario","funders":"","keywords":"Pneumococcal disease; Serotype; Streptococcus pneumoniae; Disease; Disease surveillance; Pneumococcal infections","score_opus":0.010720167816834795,"score_gpt":0.2848204697289516,"score_spread":0.2741003019121168,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210294285","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953398,0.00094780675,0.00000899338,0.0023784116,0.00041447196,0.0005601504,0.00030432735,0.000011754574,0.000034265893],"genre_scores_gemma":[0.9976412,0.00087770773,0.0000014555784,0.0005060101,0.0008754739,0.00005214064,0.000020539539,0.00001639031,0.000009058386],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99788266,0.0007502566,0.00048654687,0.00018025807,0.00042369086,0.00027657466],"domain_scores_gemma":[0.997457,0.0013577231,0.00034197746,0.00028640512,0.00008887739,0.00046797274],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048190178,0.00016629582,0.00031943893,0.00007212784,0.0006718342,0.0000275698,0.00014990398,0.000017364104,0.00013589751],"category_scores_gemma":[0.00042927737,0.00008361432,0.00017934311,0.0004799955,0.00010055569,0.000054333188,0.000111028356,0.0008555168,9.634877e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030282102,0.0002697327,0.9852467,0.000006295961,0.00021442416,0.00008090159,0.00006429279,0.011689664,8.0117655e-7,0.0000039243164,0.0019429163,0.00017748281],"study_design_scores_gemma":[0.0014530275,0.0002191601,0.9971053,0.000008790154,0.00044218535,0.00016837283,0.00008857144,0.00014546921,3.8770125e-8,0.00022748842,0.00003813029,0.00010344142],"about_ca_topic_score_codex":0.08552892,"about_ca_topic_score_gemma":0.13778968,"teacher_disagreement_score":0.052260764,"about_ca_system_score_codex":0.00025134344,"about_ca_system_score_gemma":0.004725714,"threshold_uncertainty_score":0.9205606},"labels":[],"label_agreement":null},{"id":"W4210390339","doi":"10.1016/j.cmi.2022.01.020","title":"Predictors and microbiology of respiratory and bloodstream bacterial infection in patients with COVID-19: author's response","year":2022,"lang":"en","type":"letter","venue":"Clinical Microbiology and Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Clinical Evaluative Sciences; Sunnybrook Hospital; Ottawa Hospital; University Health Network; Health Sciences Centre; Sunnybrook Health Science Centre; North York General Hospital; University of Toronto; Toronto East General Hospital; Toronto General Hospital; Public Health Ontario; Hotel Dieu Shaver Health and Rehabilitation Centre","funders":"","keywords":"Serology; Clinical microbiology; Coronavirus disease 2019 (COVID-19); Medicine; Scopus; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Inclusion (mineral); MEDLINE; Disease; Immunology; Internal medicine; Microbiology; Biology; Psychology; Infectious disease (medical specialty)","score_opus":0.028750670469212675,"score_gpt":0.3233637109371312,"score_spread":0.2946130404679185,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210390339","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97730714,0.000110112094,0.00000827267,0.020139627,0.0012252618,0.0008421878,0.00028643175,0.000063164676,0.000017809003],"genre_scores_gemma":[0.76978815,0.00096463575,0.00003158499,0.22485629,0.0016453479,0.00019443981,0.0020284604,0.00011674156,0.00037433705],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.99585354,0.002000152,0.00097069825,0.0008027859,0.00004436486,0.0003284653],"domain_scores_gemma":[0.9977876,0.0010946285,0.00053927273,0.0002915569,0.00010414249,0.00018277812],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0012357114,0.00037776938,0.0009791802,0.0006191831,0.00023640764,0.000013470112,0.00004445314,0.001966793,0.00016697742],"category_scores_gemma":[0.0010811,0.00030950308,0.00011976167,0.00024114491,0.0014128151,0.00008144835,0.00012793581,0.0022847336,0.0000023207963],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0037950387,0.0003570807,0.9548052,0.00027925777,0.00025605666,0.000039739058,0.00006998543,0.0000010089342,0.011357609,0.0000020219697,0.02876922,0.00026779526],"study_design_scores_gemma":[0.0036706522,0.0064353934,0.49094188,0.000062528336,0.00024135175,0.0002980666,0.0000026876155,3.206017e-7,0.000052818585,0.0000072138023,0.49810386,0.0001832203],"about_ca_topic_score_codex":0.000100965386,"about_ca_topic_score_gemma":0.00012617241,"teacher_disagreement_score":0.46933463,"about_ca_system_score_codex":0.0001369343,"about_ca_system_score_gemma":0.00036895316,"threshold_uncertainty_score":0.9999357},"labels":[],"label_agreement":null},{"id":"W4210766622","doi":"10.3390/pediatric14010011","title":"Acute Intrathoracic Tuberculosis in Children and Adolescents with Community-Acquired Pneumonia in an Area with an Intermediate Disease Burden","year":2022,"lang":"en","type":"article","venue":"Pediatric Reports","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Departamento Administrativo de Ciencia, Tecnología e Innovación (COLCIENCIAS)","keywords":"Medicine; Tuberculosis; Pneumonia; Pediatrics; Coinfection; Sputum; Etiology; Population; Community-acquired pneumonia; Bacterial pneumonia; Mycobacterium tuberculosis; Internal medicine; Immunology; Pathology; Environmental health; Human immunodeficiency virus (HIV)","score_opus":0.008935320127903282,"score_gpt":0.25802734590660703,"score_spread":0.24909202577870376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210766622","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986777,0.00011774558,0.000004344791,0.00017549441,0.00007652534,0.0008034269,0.000029302604,0.00008855801,0.000026908356],"genre_scores_gemma":[0.99899673,0.000107774686,0.000017315462,0.00023815164,0.00015132785,0.00021760537,0.000207902,0.00004695707,0.000016212618],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99793434,0.00037689137,0.00047249827,0.0004601705,0.00040060905,0.00035547267],"domain_scores_gemma":[0.9985236,0.000017310444,0.00022380745,0.00070323877,0.000056774104,0.0004752625],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043774032,0.0002611913,0.0003931648,0.0005706061,0.00029036452,0.0000454909,0.000113798094,0.000058082478,0.000017263688],"category_scores_gemma":[0.000029065854,0.00020911725,0.000038025326,0.00084470416,0.000103048966,0.00030513707,0.00014173379,0.0006932664,7.8420356e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004914053,0.0009477388,0.99152195,0.000070210204,0.000032513348,0.004570384,0.00095214683,0.00023569868,0.0005064841,2.9862454e-7,0.0000053614053,0.00066581275],"study_design_scores_gemma":[0.0012435041,0.0015470817,0.9929202,0.00007481769,0.00037787764,0.0030327358,0.0003292964,0.00016389023,0.000010290988,0.000020156283,0.0000128737565,0.00026727948],"about_ca_topic_score_codex":0.00037861473,"about_ca_topic_score_gemma":0.0003605234,"teacher_disagreement_score":0.0015376481,"about_ca_system_score_codex":0.00015435944,"about_ca_system_score_gemma":0.0002809149,"threshold_uncertainty_score":0.8527554},"labels":[],"label_agreement":null},{"id":"W4210833716","doi":"10.1172/jci157124","title":"Streptococcus pneumoniae colonization associates with impaired adaptive immune responses against SARS-CoV-2","year":2022,"lang":"en","type":"article","venue":"Journal of Clinical Investigation","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Economic and Social Research Council; School of Medicine, New York University; University College London; National Institute for Health Research Health Protection Research Unit; National Institute for Health and Care Research; York University; Wellcome Trust; University College London Hospitals NHS Foundation Trust; Pfizer","keywords":"Coinfection; Streptococcus pneumoniae; Immune system; Asymptomatic; Immunity; Acquired immune system; Cellular immunity; Respiratory system; Disease; Exacerbation","score_opus":0.09176330780616665,"score_gpt":0.3759521306607322,"score_spread":0.28418882285456554,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210833716","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9931497,0.000075711185,0.00011865354,0.00551384,0.00050710817,0.00035299401,0.000015896547,0.00004052496,0.00022554553],"genre_scores_gemma":[0.99647105,0.000043089025,0.00024251461,0.0026796681,0.00033990425,0.000024079474,0.000017474136,0.00002506133,0.00015714583],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99669224,0.0008925116,0.0014438707,0.00017972436,0.00061183266,0.00017983225],"domain_scores_gemma":[0.99654675,0.0006935389,0.00176345,0.00018351673,0.0006473512,0.00016540026],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022171012,0.0001485451,0.00057836395,0.00023559008,0.00033049774,0.00002942331,0.00011618942,0.00012184896,0.000021874464],"category_scores_gemma":[0.0021484885,0.00011415342,0.00027636226,0.00054082414,0.00022940226,0.00022844506,0.000047800942,0.0009551851,0.000006735574],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012831587,0.0006340527,0.6949204,0.000019744783,0.00044891576,0.00021823347,0.0004590178,0.0008408422,0.2972178,0.00011133055,0.0018191433,0.0020273698],"study_design_scores_gemma":[0.0043856525,0.010001892,0.9549359,0.00021615776,0.00041442277,0.00025227683,0.00060816045,0.0013921073,0.018998628,0.00058716466,0.007983453,0.00022415571],"about_ca_topic_score_codex":0.0000072004696,"about_ca_topic_score_gemma":0.000009848473,"teacher_disagreement_score":0.27821916,"about_ca_system_score_codex":0.0002292109,"about_ca_system_score_gemma":0.0011876442,"threshold_uncertainty_score":0.46550414},"labels":[],"label_agreement":null},{"id":"W4210898648","doi":"10.1093/ofid/ofac043","title":"Community-Acquired Pneumonia in Canada During Coronavirus Disease 2019","year":2022,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Queen's University; University of Manitoba; University of Toronto; McMaster University","funders":"","keywords":"Medicine; Community-acquired pneumonia; Coronavirus disease 2019 (COVID-19); Etiology; Pneumonia; Context (archaeology); Intensive care medicine; Coronavirus; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); 2019-20 coronavirus outbreak; Disease; Family medicine; Pathology; Infectious disease (medical specialty); Outbreak; Internal medicine","score_opus":0.021552510404589373,"score_gpt":0.2903788131580252,"score_spread":0.26882630275343583,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210898648","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9908599,0.00029437238,9.922773e-7,0.0017195691,0.0005354361,0.0010280979,0.0006008001,0.00010001939,0.0048607606],"genre_scores_gemma":[0.9944525,0.000030670402,6.3897414e-7,0.0034108942,0.00003230095,0.0006339302,0.00019066791,0.000049052716,0.0011993559],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998069,0.00040267454,0.00035113157,0.0002955351,0.0003698332,0.0005118575],"domain_scores_gemma":[0.9985492,0.00008190915,0.00011872825,0.0006600374,0.00004826964,0.0005418446],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00012336721,0.00023981598,0.0003901514,0.00018858722,0.0016861052,0.00007578256,0.00039235046,0.00002556993,0.0010948332],"category_scores_gemma":[0.00009366118,0.00024962093,0.0001220717,0.0005120844,0.000066157554,0.00023886297,0.000978953,0.00045976404,0.000031999163],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022933229,0.0009881892,0.992474,0.000059863156,0.00006511322,0.0005582674,0.000057603134,0.0012822077,0.0015231324,0.00010224112,0.0018563655,0.0008036454],"study_design_scores_gemma":[0.0024349901,0.0002375605,0.9687463,0.0000477715,0.00010561541,0.00012725912,0.000847249,0.00007359933,0.000038386883,0.00021712424,0.026827468,0.00029667307],"about_ca_topic_score_codex":0.7604783,"about_ca_topic_score_gemma":0.76036614,"teacher_disagreement_score":0.024971101,"about_ca_system_score_codex":0.0020648248,"about_ca_system_score_gemma":0.0030176162,"threshold_uncertainty_score":0.9999956},"labels":[],"label_agreement":null},{"id":"W4210974090","doi":"10.1002/ajh.26493","title":"Immunogenicity of a 5‐dose pneumococcal vaccination schedule following allogeneic hematopoietic stem cell transplantation","year":2022,"lang":"en","type":"article","venue":"American Journal of Hematology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"St. Antonius Ziekenhuis; ZonMw","keywords":"Medicine; Pneumococcal polysaccharide vaccine; Pneumococcal conjugate vaccine; Immunogenicity; Vaccination; Hematopoietic stem cell transplantation; Immunology; Pneumococcal vaccine; Transplantation; Serotype; Vaccination schedule; Pneumococcal infections; Internal medicine; Streptococcus pneumoniae; Antibody; Immunization; Pneumococcal disease; Antibiotics","score_opus":0.010245731203748954,"score_gpt":0.26769308146892973,"score_spread":0.2574473502651808,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210974090","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99717414,0.00052203686,0.0010176146,0.0006592162,0.00028970098,0.00015359203,0.000005190546,0.00001404714,0.00016445942],"genre_scores_gemma":[0.99944085,0.000057050227,0.00021924905,0.0002013379,0.00002482706,0.000013809312,0.0000037478153,0.00001798652,0.000021147955],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983841,0.00028260046,0.00070096663,0.00013209826,0.00030318354,0.00019700703],"domain_scores_gemma":[0.9987285,0.00013067687,0.0007589397,0.00016031705,0.00012140086,0.00010016573],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037503164,0.00012430437,0.0006451164,0.00033596973,0.00014861349,0.0000038479775,0.00013369192,0.000038265443,0.000105281484],"category_scores_gemma":[0.000014371837,0.000112015536,0.00036997703,0.0004272233,0.00007372243,0.000071558425,0.000028535043,0.00036779075,0.0000036453882],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006769902,0.0010576393,0.14736669,0.00024282781,0.00047376665,0.000980467,0.0024628856,0.0005820412,0.84062093,0.00038664974,0.00003308623,0.005116014],"study_design_scores_gemma":[0.01659792,0.023244238,0.33805236,0.00033557805,0.00354427,0.1339437,0.026717713,0.0002941423,0.4530481,0.0005069169,0.0027529006,0.0009621547],"about_ca_topic_score_codex":0.00000938579,"about_ca_topic_score_gemma":0.0000019981605,"teacher_disagreement_score":0.38757282,"about_ca_system_score_codex":0.00009414593,"about_ca_system_score_gemma":0.00026921296,"threshold_uncertainty_score":0.4567861},"labels":[],"label_agreement":null},{"id":"W4211244827","doi":"10.1517/13543784.11.2.189","title":"The macrolides","year":2002,"lang":"en","type":"review","venue":"Expert Opinion on Investigational Drugs","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; St. Paul's Hospital; Royal University Hospital","funders":"","keywords":"Clarithromycin; Azithromycin; Erythromycin; Medicine; Macrolide Antibiotics; Antimicrobial; Antibiotics; Intensive care medicine; Dosing; Adverse effect; Antibiotic resistance; Clinical trial; Pharmacology; Biology; Internal medicine; Microbiology","score_opus":0.10257103055064343,"score_gpt":0.3915771278110502,"score_spread":0.28900609726040677,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4211244827","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[7.3801107e-7,0.98028404,0.0000027077804,0.0050463085,0.001706281,0.0006338014,0.000029603249,0.00011157501,0.012184961],"genre_scores_gemma":[0.000002015711,0.9901853,0.000040373012,0.003352636,0.0019590028,0.0005066166,0.00020202178,0.000059493042,0.0036925385],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99802375,0.00018974561,0.00058538356,0.00037691463,0.00054615195,0.00027804062],"domain_scores_gemma":[0.9982404,0.0006545871,0.00024263895,0.00049067056,0.000095990465,0.0002757058],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00019189701,0.00037939672,0.0007048056,0.00018701467,0.00062502257,0.00006949522,0.00019986759,0.00029501072,0.00018981192],"category_scores_gemma":[0.00027980763,0.0002168917,0.0005318286,0.0003438343,0.00037208552,0.00004942972,0.00004444004,0.00061183266,0.0013713196],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000033340932,0.00008637416,0.0000034159254,0.00078641064,0.00018383421,0.0000052588675,0.0001404031,0.0000012732191,0.000002619235,0.016865978,0.1372622,0.8446589],"study_design_scores_gemma":[0.00017530071,0.00008875007,0.000010676895,0.006180749,0.000026852007,0.00013742856,0.000017717126,0.000014291245,0.0000028469592,0.00029087576,0.99283457,0.00021994855],"about_ca_topic_score_codex":0.0000043044392,"about_ca_topic_score_gemma":2.2522849e-7,"teacher_disagreement_score":0.85557234,"about_ca_system_score_codex":0.0002018568,"about_ca_system_score_gemma":0.0004861495,"threshold_uncertainty_score":0.9994062},"labels":[],"label_agreement":null},{"id":"W4213041805","doi":"10.1016/j.cjcpc.2021.12.003","title":"A Survey of Immunization Practices in Patients With Congenital Heart Disease","year":2022,"lang":"en","type":"article","venue":"CJC Pediatric and Congenital Heart Disease","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"Michael Smith Health Research BC; Canadian Child Health Clinician Scientist Program; BC Children's Hospital; Children's Hospital Foundation","keywords":"Heart disease; Medicine; Immunization; Disease; Pediatrics; Population; Health care; Family medicine; Medical emergency; Environmental health; Cardiology; Internal medicine; Immunology","score_opus":0.016005533816094614,"score_gpt":0.2670090192724922,"score_spread":0.2510034854563976,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4213041805","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99669564,0.0015722517,0.000002800122,0.0003307112,0.00011488764,0.0006304812,0.00055632263,0.00003089911,0.00006598702],"genre_scores_gemma":[0.99886084,0.000023994957,0.0000053376934,0.00050133676,0.00005959689,0.00009314247,0.00031598884,0.00002285982,0.00011693318],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985836,0.00024525574,0.00028855633,0.00028443083,0.00037796365,0.00022019616],"domain_scores_gemma":[0.99874455,0.00014004506,0.00015574272,0.00024887352,0.00025223647,0.0004585503],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001939687,0.00015753014,0.00026114794,0.00023979189,0.00022039417,0.00001991146,0.000055077013,0.000029948695,0.00011662983],"category_scores_gemma":[0.0004259274,0.00014054179,0.000048575417,0.00078922685,0.00009470995,0.00020629224,0.00009526497,0.00021394281,0.000008026276],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018780626,0.0011228573,0.9964452,0.00007561028,0.00002979284,0.000033633594,0.000056323177,0.000015960555,0.00001732521,0.0000062046206,0.00023380382,0.00008525809],"study_design_scores_gemma":[0.0026034303,0.00057807594,0.9956394,0.000004988512,0.0003728111,0.0000048560214,0.00008146814,0.00010156707,7.380196e-7,0.000009322192,0.00044113045,0.00016222088],"about_ca_topic_score_codex":0.0002298286,"about_ca_topic_score_gemma":0.000036150985,"teacher_disagreement_score":0.0021651501,"about_ca_system_score_codex":0.000048089954,"about_ca_system_score_gemma":0.00063508784,"threshold_uncertainty_score":0.5731127},"labels":[],"label_agreement":null},{"id":"W4213418748","doi":"10.29169/1927-5951.2021.11.03","title":"Therapeutic Effectiveness of Cefoperazone for Community-Acquired Pneumonia and Associated Factors in a Tertiary Care Hospital, Vietnam","year":2021,"lang":"en","type":"article","venue":"Journal of Pharmacy and Nutrition Sciences","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Cefoperazone; Medicine; Internal medicine; Community-acquired pneumonia; Pneumonia; Klebsiella pneumoniae; Statistical significance; Klebsiella pneumonia; Exact test; Streptococcus pneumoniae; Antibiotics; Retrospective cohort study; Pseudomonas aeruginosa; Antibiotic resistance; Bacteria; Imipenem; Microbiology","score_opus":0.03830196456157648,"score_gpt":0.3594098038236477,"score_spread":0.3211078392620712,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4213418748","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951612,0.0037751268,0.00002637966,0.00065174757,0.00014499338,0.00020894295,0.000014963554,0.0000037939362,0.000012864694],"genre_scores_gemma":[0.9988558,0.0009562754,0.000027035514,0.000121084566,0.000023653685,0.000007682804,0.0000033006042,0.0000035093863,0.0000016281213],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990949,0.0003283695,0.0002584999,0.000075774995,0.00014494517,0.00009753643],"domain_scores_gemma":[0.99908715,0.00037393425,0.00014726639,0.000039145118,0.0002875912,0.00006489986],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006801556,0.000071719245,0.00025257215,0.00016264978,0.00022357293,0.00002451996,0.00004793647,0.000031111904,0.000004111277],"category_scores_gemma":[0.00011608782,0.000052215233,0.000071748465,0.0002676012,0.00020147403,0.00021602836,0.000016197791,0.00014257777,4.0912443e-8],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006552674,0.0005250863,0.48639968,0.00038011454,0.000034881337,0.000009340504,0.0010698837,0.0000018948671,0.51089126,0.000006446311,0.0000032243904,0.0006126851],"study_design_scores_gemma":[0.005653519,0.0012180357,0.86386645,0.0009254623,0.00011475377,0.00012250041,0.0062030433,0.000075465614,0.12113522,0.00019676126,0.00040528082,0.00008349344],"about_ca_topic_score_codex":0.000013086134,"about_ca_topic_score_gemma":0.000007720969,"teacher_disagreement_score":0.38975602,"about_ca_system_score_codex":0.000031020256,"about_ca_system_score_gemma":0.000110962545,"threshold_uncertainty_score":0.21292754},"labels":[],"label_agreement":null},{"id":"W4214553879","doi":"10.1177/2333794x221078698","title":"Association of Clinical Signs, Host Biomarkers and Etiology With Radiological Pneumonia in Bhutanese Children","year":2022,"lang":"en","type":"article","venue":"Global Pediatric Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Toronto General Hospital; University Health Network","funders":"","keywords":"Medicine; Pneumonia; Procalcitonin; Radiological weapon; Etiology; Erythrocyte sedimentation rate; Clinical endpoint; Intensive care medicine; Internal medicine; Sepsis; Radiology; Clinical trial","score_opus":0.0184974194781699,"score_gpt":0.3418460055144631,"score_spread":0.3233485860362932,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4214553879","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9902186,0.0004685697,0.0000103075545,0.008260122,0.00018577391,0.0004523707,0.00012735203,0.00003418724,0.0002427502],"genre_scores_gemma":[0.9968624,0.00086823886,0.000061058505,0.0019252168,0.00020739039,0.00002145756,0.000032931806,0.0000057728103,0.000015499909],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99787664,0.0006456818,0.0006219408,0.00029246294,0.00024596057,0.00031729118],"domain_scores_gemma":[0.9990537,0.00019989145,0.0003573614,0.00013072029,0.000039719896,0.00021856365],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014807452,0.0001095961,0.0005164215,0.000106945605,0.0001286958,0.0000032254552,0.000054258864,0.00013223036,0.000035620167],"category_scores_gemma":[0.00029605342,0.00008562513,0.00006512407,0.00066295476,0.00006444048,0.000023750797,0.000060304916,0.0003903454,0.0000032280016],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016384516,0.00028303414,0.9973137,0.000029673496,0.000049779093,0.00002328668,0.00004098161,0.000017620996,0.000027592147,0.000033758723,0.0011385265,0.0008782229],"study_design_scores_gemma":[0.0018793059,0.0043527125,0.9915075,0.0000036641043,0.000054733453,0.000270771,0.000066815184,0.000018087236,1.2352355e-7,0.0000169153,0.0017513782,0.00007804102],"about_ca_topic_score_codex":0.00036410533,"about_ca_topic_score_gemma":0.00006509011,"teacher_disagreement_score":0.0066438657,"about_ca_system_score_codex":0.00038833267,"about_ca_system_score_gemma":0.00071543356,"threshold_uncertainty_score":0.34916914},"labels":[],"label_agreement":null},{"id":"W4214890189","doi":"10.1177/13524585221078497","title":"Emergency department use by persons with MS: A population-based descriptive study with a focus on infection-related visits","year":2022,"lang":"en","type":"article","venue":"Multiple Sclerosis Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; University of Saskatchewan; Nova Scotia Health Authority; Dalhousie University; University of British Columbia Hospital","funders":"Canadian Institutes of Health Research","keywords":"Emergency department; Medicine; Multiple sclerosis; Emergency medicine; Population; Pediatrics; Environmental health; Immunology; Psychiatry","score_opus":0.04755716566227545,"score_gpt":0.2595398068259643,"score_spread":0.21198264116368884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4214890189","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974493,0.000037655824,0.00035724282,0.00055022346,0.00029559966,0.0010499553,0.000082127786,0.000103501196,0.000074392236],"genre_scores_gemma":[0.999092,0.000012220236,0.00007586819,0.00020750037,0.000064408814,0.00029260063,0.00003487493,0.000054122385,0.00016641675],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978435,0.00033122717,0.00040025378,0.00034154317,0.0007376478,0.00034579964],"domain_scores_gemma":[0.99890804,0.00008057512,0.00028020536,0.0002481301,0.00017997029,0.00030308106],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00025317253,0.0002729012,0.00031231283,0.0003501489,0.0017145129,0.00007368191,0.00007286027,0.0000494414,0.00061031163],"category_scores_gemma":[0.00007468644,0.00019428821,0.0001472841,0.0006984026,0.000028082943,0.00019588174,0.00002529281,0.00080552633,0.000011680432],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008202919,0.003258232,0.9796551,0.0000051592465,0.0004994712,0.00007286477,0.0009556591,0.0090128975,0.00438294,0.0000024374613,0.00097097154,0.0003640043],"study_design_scores_gemma":[0.0073100696,0.010321784,0.9785977,0.000096306474,0.00038825776,0.00024805215,0.00076562003,0.0009019543,0.0001739651,0.0000028880104,0.0009347659,0.00025864824],"about_ca_topic_score_codex":0.0010866197,"about_ca_topic_score_gemma":0.0011321044,"teacher_disagreement_score":0.008110943,"about_ca_system_score_codex":0.00072372396,"about_ca_system_score_gemma":0.00019408432,"threshold_uncertainty_score":0.9995851},"labels":[],"label_agreement":null},{"id":"W4220690966","doi":"10.1186/s12887-022-03235-z","title":"Etiology and the challenge of diagnostic testing of community-acquired pneumonia in children and adolescents","year":2022,"lang":"en","type":"article","venue":"BMC Pediatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":91,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Hospital Universitario de San Vicente Fundación; Canada Research Chairs; Universidad de Antioquia; Departamento Administrativo de Ciencia, Tecnología e Innovación (COLCIENCIAS)","keywords":"Medicine; Mycoplasma pneumoniae; Etiology; Pneumonia; Streptococcus pneumoniae; Community-acquired pneumonia; Population; Sputum; Atypical pneumonia; Serology; Immunology; Tuberculosis; Internal medicine; Pathology; Microbiology; Antibiotics; Biology","score_opus":0.024491419629553476,"score_gpt":0.2616044796205605,"score_spread":0.237113059991007,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220690966","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99819154,0.0010395144,0.000006771411,0.00026999222,0.00004874631,0.0003225585,0.000022197084,0.000010467315,0.000088191744],"genre_scores_gemma":[0.9992463,0.0005303013,0.000024069685,0.000107717715,0.00004796581,0.000026634938,0.0000053509334,0.0000077331015,0.000003900087],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990372,0.00042500795,0.00024725066,0.00007728004,0.0001068664,0.00010636652],"domain_scores_gemma":[0.998157,0.001458571,0.00013314867,0.00017839184,0.00003664172,0.000036209673],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00056377455,0.00007089797,0.00023561664,0.0001379969,0.00015698354,0.0000019745846,0.00007108486,0.00004049227,0.0000037127388],"category_scores_gemma":[0.0017775185,0.00005354449,0.000027575286,0.0002949928,0.00020088746,0.000015664078,0.00019909417,0.00028863075,2.3021914e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038765764,0.00020564022,0.9978912,0.00014567107,0.000006726633,0.0000013658353,0.0006178472,0.000040323743,0.00038202864,0.000063013984,0.000009367699,0.00059803884],"study_design_scores_gemma":[0.002286775,0.0003265962,0.99665755,0.000019187466,0.00008733303,0.00006907529,0.00025584194,0.00006611293,0.0000061786272,0.00015090455,0.000029349862,0.000045086454],"about_ca_topic_score_codex":0.00019615694,"about_ca_topic_score_gemma":0.000036540205,"teacher_disagreement_score":0.0022480094,"about_ca_system_score_codex":0.000015380925,"about_ca_system_score_gemma":0.00006127378,"threshold_uncertainty_score":0.21834809},"labels":[],"label_agreement":null},{"id":"W4220930616","doi":"10.1016/j.vaccine.2022.02.081","title":"Recalibrated estimates of non-bacteremic and bacteremic pneumococcal community acquired pneumonia in hospitalized Canadian adults from 2010 to 2017 with addition of an extended spectrum serotype-specific urine antigen detection assay","year":2022,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Saint John Regional Hospital; Ottawa Hospital; McMaster University; Mount Sinai Hospital; Vancouver General Hospital; Public Health Ontario; University of British Columbia; Izaak Walton Killam Health Centre; Nova Scotia Health Authority; Centre hospitalier universitaire de Québec; McGill University Health Centre; University of Ottawa; Public Health Agency of Canada; University of Toronto; Dalhousie University","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Serotype; Pneumonia; Streptococcus pneumoniae; Community-acquired pneumonia; Bacteremia; Pneumococcal pneumonia; Sputum; Internal medicine; Context (archaeology); Urine; Immunology; Microbiology; Biology; Pathology; Antibiotics; Tuberculosis","score_opus":0.010663720209905369,"score_gpt":0.23531049030602438,"score_spread":0.22464677009611903,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220930616","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977845,0.00003429951,0.000028926532,0.00047691102,0.00016917565,0.00090374314,0.0004876996,0.000056483605,0.000058254296],"genre_scores_gemma":[0.9989147,0.000044072807,0.00012467348,0.000080891696,0.000045639536,0.000081202365,0.0006480535,0.00004307603,0.000017674918],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983498,0.00028140683,0.00050488074,0.00034035346,0.00019721275,0.00032633095],"domain_scores_gemma":[0.9986159,0.00009803161,0.00023480583,0.000594768,0.00011222328,0.00034422957],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030870043,0.00025523847,0.0005734986,0.00064569275,0.00026550598,0.000016812253,0.00017175874,0.00012106306,0.00041139493],"category_scores_gemma":[0.000052899322,0.00023316177,0.000052101343,0.0007129519,0.000034465564,0.00019924038,0.00007929296,0.00046016776,0.0000045363313],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017323697,0.0004173653,0.220363,0.000057381327,0.00006130347,0.00004755947,0.00052458525,0.000068473004,0.77545744,9.1862773e-7,0.000040213235,0.0012294014],"study_design_scores_gemma":[0.0032795682,0.0026158642,0.92594916,0.0002663751,0.000048950344,0.000109855624,0.00029885373,0.0013538221,0.065647185,0.000036703732,0.00017704532,0.00021664865],"about_ca_topic_score_codex":0.06828899,"about_ca_topic_score_gemma":0.1321378,"teacher_disagreement_score":0.70981026,"about_ca_system_score_codex":0.0002248523,"about_ca_system_score_gemma":0.00019907145,"threshold_uncertainty_score":0.95080614},"labels":[],"label_agreement":null},{"id":"W4220940685","doi":"10.1136/bmjopen-2021-056706","title":"Aetiology of lobar pneumonia determined by multiplex molecular analyses of lung and pleural aspirate specimens in the Gambia: findings from population-based pneumonia surveillance","year":2022,"lang":"en","type":"article","venue":"BMJ Open","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"London School of Hygiene and Tropical Medicine; Medical Research Council; Bill and Melinda Gates Foundation","keywords":"Medicine; Pneumonia; Lobar pneumonia; Etiology; Lung; Pathology; Population; Intensive care medicine; Internal medicine; Environmental health","score_opus":0.06446080925281046,"score_gpt":0.40192290620791676,"score_spread":0.3374620969551063,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220940685","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962065,0.00008549821,0.00001983506,0.0011685562,0.00006405261,0.002061093,0.0002553889,0.000010313621,0.00012873091],"genre_scores_gemma":[0.9986411,0.0000032050782,0.000060367984,0.00076223933,0.000015519812,0.00028128168,0.00018611303,0.000016194346,0.00003399606],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981832,0.00050177926,0.00055057456,0.0002945333,0.00027509968,0.00019484582],"domain_scores_gemma":[0.99891865,0.00028279697,0.000275069,0.00041583323,0.00005471068,0.000052916934],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005956343,0.00015582441,0.00052839547,0.00014805218,0.00012588613,0.000020271413,0.00029015585,0.00006186074,0.000118388474],"category_scores_gemma":[0.00018133585,0.0001227878,0.0000924163,0.00039392908,0.00008632635,0.000057177214,0.00018214715,0.00020413859,0.0000012949157],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000096948424,0.00008748101,0.5412943,0.000022891807,0.000039962648,0.000036547175,0.00008977756,0.0005058418,0.45771497,0.000007051653,0.000065895074,0.000038375445],"study_design_scores_gemma":[0.0018244238,0.00035466312,0.98681486,0.00003975657,0.000068500056,0.000026639445,0.00013035083,0.003725808,0.006592037,0.000034057666,0.00025284194,0.0001360479],"about_ca_topic_score_codex":0.0036900456,"about_ca_topic_score_gemma":0.0006314193,"teacher_disagreement_score":0.4511229,"about_ca_system_score_codex":0.00006169288,"about_ca_system_score_gemma":0.00010832212,"threshold_uncertainty_score":0.55782694},"labels":[],"label_agreement":null},{"id":"W4221043323","doi":"10.1016/j.vaccine.2022.03.048","title":"Vaccine effectiveness of the 7-valent and 13-valent pneumococcal conjugate vaccines in Canada: An IMPACT study","year":2022,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Children's Hospital; Alberta Health Services; Izaak Walton Killam Health Centre; BC Children's Hospital; Dalhousie University; University of British Columbia; University of Calgary","funders":"","keywords":"Pneumococcal conjugate vaccine; Medicine; Vaccination; Serotype; Pediatrics; Pneumococcal disease; Immunization; Streptococcus pneumoniae; Cohort; Pneumococcal vaccine; Pneumococcal infections; Conjugate vaccine; Internal medicine; Immunology; Antibiotics; Antigen","score_opus":0.013822917902856852,"score_gpt":0.28326585700519996,"score_spread":0.2694429391023431,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4221043323","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969415,0.00024169845,0.0000010387856,0.00061855145,0.00039961695,0.0016677176,0.00005007551,0.000025218029,0.00005455639],"genre_scores_gemma":[0.99951,0.000023966837,8.6235326e-7,0.00015657369,0.00006241967,0.00017017749,0.000009380999,0.00003029624,0.00003635608],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99778944,0.0006701083,0.00048003503,0.00037632755,0.00036543727,0.00031866718],"domain_scores_gemma":[0.99884087,0.00017666502,0.00015274915,0.00055617176,0.00009242972,0.0001811211],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007106931,0.00025108006,0.0006138146,0.00019911083,0.00023714965,0.000007847678,0.0001829805,0.000034693014,0.00015191743],"category_scores_gemma":[0.00007815395,0.00016152184,0.00010170319,0.0006513687,0.0000067426727,0.00007209294,0.00025368962,0.0004444053,8.394375e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005737728,0.00097081123,0.94612867,0.000112817936,0.00012374386,0.00008046456,0.00024848938,0.0013959383,0.04996372,0.000006348362,0.000086524604,0.0003086919],"study_design_scores_gemma":[0.006161139,0.0022319132,0.98775405,0.000059507052,0.00016148499,0.0002256375,0.0008822976,0.00026723306,0.001778474,0.00001698863,0.00030070054,0.00016056481],"about_ca_topic_score_codex":0.3174307,"about_ca_topic_score_gemma":0.49845132,"teacher_disagreement_score":0.18102062,"about_ca_system_score_codex":0.00075698324,"about_ca_system_score_gemma":0.00093945564,"threshold_uncertainty_score":0.6871146},"labels":[],"label_agreement":null},{"id":"W4221124944","doi":"10.1101/2022.03.23.485412","title":"A multiple comorbidities mouse model to assess atherosclerosis progression following lung infection in <i>ApoE</i> deficient mice","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; University of Ottawa","funders":"","keywords":"Inflammation; Medicine; Streptococcus pneumoniae; Pneumonia; Lung; Apolipoprotein E; Immunology; Inoculation; Disease; Pathology; Internal medicine; Biology; Microbiology; Antibiotics","score_opus":0.04260926159603288,"score_gpt":0.29100104033150354,"score_spread":0.24839177873547066,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4221124944","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99198127,0.00020207687,0.0027614008,0.0002921318,0.0015542813,0.0022805892,0.00024297263,0.0006637751,0.000021498628],"genre_scores_gemma":[0.9947131,0.00018285228,0.0017807815,0.0007532039,0.00018434018,0.0021569422,0.0000021743588,0.00020450309,0.000022049031],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9962761,0.0002518017,0.0007736392,0.0011806877,0.00077147107,0.00074631016],"domain_scores_gemma":[0.9977362,0.00009792949,0.00034581323,0.0011241551,0.0002701074,0.00042578072],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008331295,0.00066699105,0.0008663596,0.0008547259,0.00047753824,0.00018626891,0.00030817668,0.00052395207,0.000030978546],"category_scores_gemma":[0.000355594,0.0007025527,0.00041473273,0.0010176769,0.00006473895,0.00018948627,0.0008035968,0.0015559912,0.00002384911],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004125754,0.00061827496,0.3134916,0.00041262916,0.00009807255,0.000031640553,0.000055953526,0.012230555,0.67283046,0.00002828977,0.0001602585,9.744342e-7],"study_design_scores_gemma":[0.0039390433,0.00051178865,0.52477723,0.0033307632,0.00075066026,1.911492e-7,0.000041842693,0.050904624,0.4068256,0.0000012573169,0.0065794704,0.0023375477],"about_ca_topic_score_codex":0.00024982632,"about_ca_topic_score_gemma":0.00004233996,"teacher_disagreement_score":0.2660049,"about_ca_system_score_codex":0.001507815,"about_ca_system_score_gemma":0.0008851402,"threshold_uncertainty_score":0.99954253},"labels":[],"label_agreement":null},{"id":"W4223505753","doi":"10.1017/ice.2022.78","title":"Rotating opportunistic prevalence audit: A new pragmatic audit method is effective at identifying misuse of ciprofloxacin in a large academic hospital","year":2022,"lang":"en","type":"article","venue":"Infection Control and Hospital Epidemiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Audit; Medical prescription; Ciprofloxacin; Medicine; Tertiary care; Emergency medicine; Family medicine; Intensive care medicine; Medical emergency; Business; Nursing; Antibiotics; Accounting; Microbiology","score_opus":0.030840462431203836,"score_gpt":0.36977594531457153,"score_spread":0.3389354828833677,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4223505753","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.967505,0.0013945809,0.02076429,0.0067376005,0.00097060675,0.002232897,0.00012688014,0.000100657664,0.00016752588],"genre_scores_gemma":[0.9956981,0.00037311504,0.00033163783,0.0021316474,0.00020831196,0.00076900737,0.000020699836,0.00003166323,0.00043581665],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9959796,0.0014827467,0.0011152541,0.00064299797,0.00020743128,0.00057197287],"domain_scores_gemma":[0.99585176,0.0026485773,0.00084651407,0.00027531284,0.00010489379,0.00027291896],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.003086715,0.00030283784,0.0011302398,0.00041215398,0.00043866818,0.000006357809,0.00009688513,0.0002492632,0.0003286157],"category_scores_gemma":[0.0051432224,0.0002835332,0.00026386394,0.00042263098,0.00014100179,0.00016919174,0.00020626155,0.0010824233,0.00001695335],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016535145,0.00035265376,0.9759274,0.00063311035,0.00025405455,0.000051316772,0.001978307,0.0003000002,0.008591869,0.0009145454,0.0010570091,0.009774371],"study_design_scores_gemma":[0.0066155437,0.0038073745,0.96394193,0.00033031116,0.00048231616,0.00026648832,0.00023063138,0.015531914,0.000099189,0.0028234315,0.0054668067,0.0004040445],"about_ca_topic_score_codex":0.0005159341,"about_ca_topic_score_gemma":0.000052741714,"teacher_disagreement_score":0.02819314,"about_ca_system_score_codex":0.00030945567,"about_ca_system_score_gemma":0.00022232636,"threshold_uncertainty_score":0.9999617},"labels":[],"label_agreement":null},{"id":"W4223904478","doi":"10.1136/bmjgh-2021-008143","title":"Derivation and validation of a novel risk assessment tool to identify children aged 2–59 months at risk of hospitalised pneumonia-related mortality in 20 countries","year":2022,"lang":"en","type":"article","venue":"BMJ Global Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Global Health Research","funders":"World Health Organization; Bill and Melinda Gates Foundation","keywords":"Pneumonia; Medicine; Logistic regression; Risk assessment; Unconsciousness; Case fatality rate; Risk of mortality; Emergency medicine; Mortality rate; Intensive care medicine; Pediatrics; Epidemiology; Internal medicine","score_opus":0.015965149840103724,"score_gpt":0.3794419306115532,"score_spread":0.36347678077144946,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4223904478","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9942455,0.00007875177,0.00026586733,0.001081723,0.00017354154,0.0021753712,0.0018700054,0.000034845205,0.000074348216],"genre_scores_gemma":[0.99907243,0.0001111947,0.00014435271,0.00030657425,0.000019875084,0.00011656911,0.00020792683,0.000010083045,0.0000110026],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99780697,0.00031773103,0.00083812093,0.0002885246,0.00052155636,0.00022711736],"domain_scores_gemma":[0.9987131,0.000048892438,0.00069601665,0.00029812963,0.000113749644,0.0001301064],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012690286,0.00014259251,0.00043516347,0.00013219228,0.00027697813,0.000010303758,0.0000681775,0.000068409194,0.00003441617],"category_scores_gemma":[0.00017316219,0.00014131411,0.00007550765,0.00060632295,0.00006134559,0.0000968285,0.000117429256,0.00021674996,0.0000012459707],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000102464815,0.00048131373,0.9923342,0.000095333235,0.00010912602,0.0000026696086,0.00035898742,0.0026399144,0.0029337609,0.0001490674,0.00019256312,0.00060058635],"study_design_scores_gemma":[0.0026545154,0.00078044675,0.99512607,0.00007476515,0.00011007029,0.0000337935,0.00013437355,0.00046316246,0.00033321424,0.00010611467,0.00007164907,0.000111807705],"about_ca_topic_score_codex":0.004578027,"about_ca_topic_score_gemma":0.0007946878,"teacher_disagreement_score":0.0048268754,"about_ca_system_score_codex":0.00092646043,"about_ca_system_score_gemma":0.00053157593,"threshold_uncertainty_score":0.69206375},"labels":[],"label_agreement":null},{"id":"W4224133945","doi":"10.1371/journal.pone.0267051","title":"Naturally acquired antibodies against 7 Streptococcus pneumoniae serotypes in Indigenous and non-Indigenous adults","year":2022,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"NOSM University","funders":"Mitacs; Bruce Power; Pfizer Canada; Northern Ontario Academic Medicine Association; Pfizer","keywords":"Indigenous; Streptococcus pneumoniae; Serotype; Pneumococcal infections; Antibody; Immunology; Pneumococcal polysaccharide vaccine; Immunoglobulin G; Biology; Antigen; Pneumococcal conjugate vaccine; Pneumococcal vaccine; Microbiology; Medicine; Antibiotics; Pneumococcal disease; Ecology","score_opus":0.015488543070845445,"score_gpt":0.23349928717086973,"score_spread":0.2180107441000243,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4224133945","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996665,0.00060292945,5.3329956e-7,0.00045699743,0.00008934032,0.0014267605,0.000059483005,0.0001269522,0.00057199533],"genre_scores_gemma":[0.9980758,0.00032060093,0.00003874167,0.00080487726,0.000096716496,0.0002598709,0.000054929933,0.00003738227,0.00031109012],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983889,0.00007212911,0.00031888424,0.0003723714,0.0004110153,0.0004366957],"domain_scores_gemma":[0.9993104,0.000051405656,0.00010528438,0.00030069397,0.000083455714,0.00014878654],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014667021,0.00021353892,0.00044502562,0.00033787198,0.0005142854,0.000026663341,0.00012181637,0.00009574492,0.00005008972],"category_scores_gemma":[0.000048737886,0.00020188594,0.00006420724,0.00038311732,0.00008039052,0.00009768272,0.0001543197,0.00042167457,0.000024587962],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000099128454,0.0021726573,0.6839733,0.000271727,0.00024064923,0.00036964205,0.010200114,0.000028161074,0.30040494,0.0000014741958,0.0000126557015,0.0022255096],"study_design_scores_gemma":[0.0023726597,0.0013563508,0.9838516,0.00038931007,0.00016171162,0.000051301882,0.0012125697,0.00013990507,0.009611901,0.00002232382,0.00046098296,0.0003693838],"about_ca_topic_score_codex":0.00010468474,"about_ca_topic_score_gemma":0.00019770415,"teacher_disagreement_score":0.29987827,"about_ca_system_score_codex":0.00017107504,"about_ca_system_score_gemma":0.00020916063,"threshold_uncertainty_score":0.823267},"labels":[],"label_agreement":null},{"id":"W4224860695","doi":"10.1016/j.jval.2022.03.017","title":"Healthcare Costs for Pneumococcal Disease in the Era of Infant Immunization With 13-Valent Pneumococcal Conjugate Vaccine: A Population-Based Study","year":2022,"lang":"en","type":"article","venue":"Value in Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"Pfizer","keywords":"Pneumococcal conjugate vaccine; Pneumococcal disease; Medicine; Immunization; Streptococcus pneumoniae; Pediatrics; Immunology; Biology; Microbiology; Antibody","score_opus":0.02402005044632292,"score_gpt":0.316356643054663,"score_spread":0.29233659260834005,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4224860695","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9775638,0.00020153777,0.000047635804,0.016257066,0.00015110677,0.005631676,0.00010810939,0.000033311724,0.0000057846114],"genre_scores_gemma":[0.9966155,0.000018252018,0.000023279084,0.001777401,0.000046828467,0.0013055541,0.00017869248,0.000029767622,0.000004715093],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9969855,0.001120887,0.00079144153,0.00031581943,0.0004415305,0.00034484518],"domain_scores_gemma":[0.99862367,0.00035673403,0.00028368545,0.00045627166,0.00010703351,0.00017258603],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013805422,0.0001727383,0.00043122555,0.00029795588,0.00035414388,0.000010746199,0.0001417302,0.000034645174,0.00001417405],"category_scores_gemma":[0.00014461565,0.00012628027,0.00007683369,0.00088963454,0.000019243245,0.00005397703,0.000035095523,0.0005706673,6.375439e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007907895,0.001705437,0.9261069,0.0004677002,0.000013237052,0.00002476256,0.0012905295,0.06888992,0.00019462852,0.00023182243,0.0000084629355,0.0002758046],"study_design_scores_gemma":[0.004268322,0.0036813552,0.9776452,0.00026015876,0.000031888012,0.0000103388575,0.0012848419,0.012393138,0.0000067025267,0.00004697529,0.00025571423,0.00011536814],"about_ca_topic_score_codex":0.0118454555,"about_ca_topic_score_gemma":0.0019398446,"teacher_disagreement_score":0.056496788,"about_ca_system_score_codex":0.00064500194,"about_ca_system_score_gemma":0.0012677046,"threshold_uncertainty_score":0.99473476},"labels":[],"label_agreement":null},{"id":"W4225311307","doi":"10.1186/s12879-021-06994-9","title":"Clinical sign and biomarker-based algorithm to identify bacterial pneumonia among outpatients with lower respiratory tract infection in Tanzania","year":2022,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; University of Toronto; University Health Network","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Fondation Leenaards; Bill and Melinda Gates Foundation","keywords":"Medicine; Procalcitonin; Lower respiratory tract infection; Pneumonia; Internal medicine; Respiratory tract infections; Prospective cohort study; Logistic regression; Biomarker; Respiratory system; Algorithm; Sepsis; Gastroenterology; Immunology; Biology","score_opus":0.028091839506241188,"score_gpt":0.32968609576183566,"score_spread":0.3015942562555945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4225311307","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958913,0.000051977095,0.00073101674,0.00004610103,0.001360821,0.0013309802,0.0001191038,0.00026983753,0.00019887366],"genre_scores_gemma":[0.9980313,0.000008815745,0.000039115723,0.00089731364,0.00025869775,0.0006079534,0.00005137994,0.00006679144,0.000038602477],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99708295,0.00063437875,0.0006772133,0.00069819996,0.00048169694,0.0004255869],"domain_scores_gemma":[0.9984791,0.00022075111,0.00022406176,0.0004141969,0.00012859587,0.0005332531],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004601265,0.00033919813,0.00053161784,0.000696216,0.0004708942,0.000085940555,0.00008171507,0.00013508245,0.00031634758],"category_scores_gemma":[0.00026833836,0.00031184196,0.00021894721,0.0008739808,0.00019699121,0.00022150713,0.00010972631,0.00044858296,0.000027430466],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00059869426,0.0030852614,0.9866976,0.00007053096,0.00006632226,0.00017304787,0.00003263272,0.0002532364,0.0015737015,0.0000025545407,0.00019342186,0.007252953],"study_design_scores_gemma":[0.0059025516,0.004477719,0.98393095,0.0000937568,0.00024474206,0.000052741278,0.000026448026,0.0004734912,0.000024596231,0.000017431737,0.0043824967,0.00037305264],"about_ca_topic_score_codex":0.00025802475,"about_ca_topic_score_gemma":0.0005055193,"teacher_disagreement_score":0.0068799,"about_ca_system_score_codex":0.00034078135,"about_ca_system_score_gemma":0.0005333985,"threshold_uncertainty_score":0.99993336},"labels":[],"label_agreement":null},{"id":"W4229652940","doi":"10.21203/rs.2.14338/v1","title":"Development and Implementation of a clinical pathway to reduce inappropriate admissions among patients with Community acquired pneumonia in a private health system in Brazil: An observational cohort study and a promising tool for efficiency improvement.","year":2019,"lang":"en","type":"preprint","venue":"Research Square","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Observational study; Community-acquired pneumonia; Medicine; Pneumonia; Cohort; Cohort study; Intensive care medicine; Environmental health; Family medicine; Internal medicine","score_opus":0.14741150069731615,"score_gpt":0.4826087476657064,"score_spread":0.33519724696839026,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4229652940","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97794396,0.00001324528,0.000071558,0.00016226516,0.00005740837,0.021617297,0.00010455577,0.000024325169,0.0000054074535],"genre_scores_gemma":[0.99651337,0.0000086811315,0.0007714888,0.00003957203,0.000020625672,0.0023471308,0.000257082,0.000032627184,0.0000094332745],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99535275,0.0012604501,0.0014232505,0.00064075144,0.00084917067,0.00047360643],"domain_scores_gemma":[0.997712,0.0003183296,0.00040878865,0.0005577709,0.0006126028,0.00039051275],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008437748,0.000239958,0.0008380762,0.0006544533,0.00035619398,0.000062610074,0.00016648993,0.00016807734,0.0000020776697],"category_scores_gemma":[0.000525212,0.00019263156,0.000041907748,0.0004653033,0.00008530153,0.0001250607,0.00059469935,0.000864811,2.9543514e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00050601596,0.0023905304,0.9732013,0.0039377715,0.00007240281,0.0000034341094,0.0066953814,0.000041009902,0.0010636591,0.00001449865,0.0000016808524,0.012072341],"study_design_scores_gemma":[0.0052227634,0.0056678546,0.9775611,0.0038428411,0.000017048977,9.984084e-7,0.006845304,0.0004943621,0.00013360026,0.000006494234,0.000036323123,0.00017130743],"about_ca_topic_score_codex":0.0013896417,"about_ca_topic_score_gemma":0.0025378563,"teacher_disagreement_score":0.019270167,"about_ca_system_score_codex":0.00064658216,"about_ca_system_score_gemma":0.0032957841,"threshold_uncertainty_score":0.7855287},"labels":[],"label_agreement":null},{"id":"W4230834696","doi":"10.1002/14651858.cd001268.pub2","title":"Chest radiograph in acute respiratory infections in children","year":2005,"lang":"en","type":"review","venue":"Cochrane Database of Systematic Reviews","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":true,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Clinical Evaluative Sciences","funders":"","keywords":"Medicine; Confidence interval; Odds ratio; Radiography; Ambulatory; Chest radiograph; Randomized controlled trial; MEDLINE; Pediatrics; Cochrane Library; Physical therapy; Emergency medicine; Internal medicine; Surgery","score_opus":0.08673314173625017,"score_gpt":0.39468111757776614,"score_spread":0.30794797584151595,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4230834696","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00008044941,0.98465234,0.000023172335,0.000015936475,0.00021888813,0.014138712,0.00042526337,0.00004639988,0.00039886704],"genre_scores_gemma":[0.000011333459,0.99535954,0.00008507591,0.00011139202,0.00021836342,0.0034080178,0.00062682043,0.000085381034,0.00009405777],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.9911323,0.0018149351,0.005387237,0.0007268004,0.00047511604,0.0004635863],"domain_scores_gemma":[0.99478215,0.00047906814,0.002050706,0.002341209,0.00010615674,0.00024068331],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0036843834,0.0008384324,0.00998889,0.0025400019,0.00006387612,0.000024390529,0.00043221033,0.0004515464,0.000118407595],"category_scores_gemma":[0.0013919771,0.0005731744,0.0016400556,0.0029149153,0.00015484693,0.00021362629,0.00011209926,0.0010493104,0.00040963522],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000021516437,0.00057270157,0.0012493348,0.96987444,0.00041635567,0.00006737339,0.00003452827,4.0831182e-7,0.000016281414,0.000031540094,0.0005827134,0.02715218],"study_design_scores_gemma":[0.000621458,0.00009295498,0.00027865238,0.6634022,0.003783952,0.00101534,0.0000060964726,0.0000011742986,4.6706728e-7,4.934732e-7,0.3304675,0.00032971072],"about_ca_topic_score_codex":0.00004166192,"about_ca_topic_score_gemma":0.00008392451,"teacher_disagreement_score":0.3298848,"about_ca_system_score_codex":0.00032401556,"about_ca_system_score_gemma":0.000523558,"threshold_uncertainty_score":0.999672},"labels":[],"label_agreement":null},{"id":"W4230999927","doi":"10.1517/eoed.8.2.297.21133","title":"Ketolides: an emerging treatment for macrolide-resistant respiratory infections, focusing on S. pneumoniae","year":2003,"lang":"en","type":"article","venue":"Expert Opinion on Emerging Drugs","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre","funders":"","keywords":"Telithromycin; Ketolide; Streptococcus pneumoniae; Microbiology; Macrolide Antibiotics; Erythromycin; Efflux; Medicine; Antibiotics; Biology","score_opus":0.05614382737932102,"score_gpt":0.3787878638256813,"score_spread":0.3226440364463603,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4230999927","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95836705,0.002476923,0.0012527665,0.0072966474,0.007510258,0.003053506,0.0000626048,0.0012470882,0.018733155],"genre_scores_gemma":[0.99056756,0.00086059404,0.00023939586,0.0052230875,0.0014676199,0.00080737507,0.00004880855,0.00018365406,0.0006019092],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99720824,0.00024518272,0.00063799083,0.0007971756,0.0004246883,0.00068673823],"domain_scores_gemma":[0.9982229,0.00021673125,0.00020333577,0.0007895027,0.00015894754,0.00040858774],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00041325614,0.00051970955,0.00054572703,0.0006791216,0.0010713695,0.00007328388,0.000104339786,0.00020201615,0.00010853347],"category_scores_gemma":[0.00023171765,0.00044415894,0.0003975201,0.00043623973,0.00008469834,0.00020331123,0.000016226679,0.00027228796,0.00006552255],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018250127,0.0123413745,0.010185745,0.00033407507,0.0013348601,0.00014135597,0.018520348,0.0036581592,0.72360706,0.04183837,0.014351023,0.1718626],"study_design_scores_gemma":[0.0031547772,0.004448195,0.00072471553,0.0003711756,0.000029709314,0.000029032302,0.0013370309,0.00020515142,0.034463,0.0001313213,0.9545935,0.00051243824],"about_ca_topic_score_codex":0.000059465365,"about_ca_topic_score_gemma":0.0000148492345,"teacher_disagreement_score":0.9402424,"about_ca_system_score_codex":0.0006847074,"about_ca_system_score_gemma":0.00028758368,"threshold_uncertainty_score":0.99980104},"labels":[],"label_agreement":null},{"id":"W4231100782","doi":"10.1016/j.vaccine.2007.01.021","title":"Prevenar™ vaccination: Review of the global data, 2006","year":2007,"lang":"en","type":"review","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Women's Health Research Institute","funders":"","keywords":"Vaccination; Virology; Medicine","score_opus":0.09183497538115162,"score_gpt":0.4257862007611221,"score_spread":0.33395122537997046,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4231100782","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[4.4819097e-7,0.98919576,0.000023382026,0.0008943297,0.0006131698,0.0016661839,0.00041418485,0.000042407937,0.0071501266],"genre_scores_gemma":[8.1368495e-7,0.9962254,0.00002971041,0.0012658689,0.0005400775,0.000032138898,0.00034757092,0.000029480172,0.0015289007],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978668,0.00015639902,0.0009987295,0.0003951926,0.00035319309,0.00022966653],"domain_scores_gemma":[0.9968616,0.00008680189,0.00061804336,0.002127535,0.00019574778,0.000110292036],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006474155,0.00033036256,0.001704475,0.000092197835,0.00007764917,0.000006194658,0.0006373371,0.00025542508,0.00068553607],"category_scores_gemma":[0.00040104974,0.00017610252,0.0005417731,0.0013340337,0.000008738144,0.000062628635,0.00032889252,0.00041687064,0.00012064183],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000018305584,0.00011610631,0.00026990945,0.17300335,0.00019462279,0.000011238977,8.231077e-7,2.8819414e-8,1.8009835e-7,0.000078098405,0.05582752,0.7704963],"study_design_scores_gemma":[0.00023531033,0.000052564228,0.0006923967,0.12987588,0.0028173202,0.000564317,5.624781e-7,4.6038213e-7,3.72189e-7,0.000007799183,0.8656244,0.00012858481],"about_ca_topic_score_codex":0.000009565486,"about_ca_topic_score_gemma":0.000018594566,"teacher_disagreement_score":0.8097969,"about_ca_system_score_codex":0.00017860848,"about_ca_system_score_gemma":0.0006756687,"threshold_uncertainty_score":0.7506139},"labels":[],"label_agreement":null},{"id":"W4231866474","doi":"10.1055/s-0040-1702193","title":"The Role of Streptococcus pneumoniae in Community-Acquired Pneumonia","year":2020,"lang":"en","type":"review","venue":"Seminars in Respiratory and Critical Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Streptococcus pneumoniae; Epidemiology; Antibiotic resistance; Intensive care medicine; Pneumonia; Disease; Immunology; Antibiotics; Pneumococcal infections; Subclinical infection; Community-acquired pneumonia; Herd immunity; Vaccination; Internal medicine; Microbiology","score_opus":0.03711051341117299,"score_gpt":0.3711754428318477,"score_spread":0.3340649294206747,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4231866474","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0030587884,0.991786,6.843798e-7,0.00063369976,0.00026057506,0.0011940743,0.000048579215,0.000043880926,0.0029737127],"genre_scores_gemma":[0.037416324,0.9613141,0.0000031627974,0.0005419805,0.00027655213,0.00032701396,0.000027727743,0.00007225594,0.000020925927],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99543893,0.0014176344,0.0015847506,0.00050624873,0.0004933152,0.0005591304],"domain_scores_gemma":[0.9955805,0.002768947,0.00022258346,0.0008298461,0.00019016626,0.00040794196],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010646734,0.00059824676,0.0026822737,0.0004705167,0.000319613,0.000020186708,0.0003904292,0.000596106,0.000028531773],"category_scores_gemma":[0.0027537814,0.00038456748,0.0002922726,0.0010403373,0.0019010169,0.00006398158,0.00024295376,0.002211876,0.000007913477],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031548832,0.0001622913,0.0049138996,0.019310612,0.00005409702,0.0005118076,0.0016243885,1.4158839e-7,0.0006622341,0.0009812022,0.000038285074,0.9717095],"study_design_scores_gemma":[0.0006855792,0.0020508345,0.0009983551,0.036524832,0.00060737424,0.00009104399,0.009717518,0.0000029717478,0.000020430878,0.0002311767,0.9487632,0.0003066897],"about_ca_topic_score_codex":0.000042939668,"about_ca_topic_score_gemma":0.00014131781,"teacher_disagreement_score":0.9714028,"about_ca_system_score_codex":0.00022902468,"about_ca_system_score_gemma":0.0005395892,"threshold_uncertainty_score":0.99986064},"labels":[],"label_agreement":null},{"id":"W4232418375","doi":"10.3410/f.1115475.571503","title":"Faculty Opinions recommendation of Accuracy of phenotypic methods for identification of Streptococcus pneumoniae isolates included in surveillance programs.","year":2008,"lang":"en","type":"dataset","venue":"Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Streptococcus pneumoniae; Identification (biology); Medicine; Biology; Microbiology","score_opus":0.05017371163800505,"score_gpt":0.42569734078445653,"score_spread":0.3755236291464515,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4232418375","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00002711606,0.0009865777,0.00036609182,0.045520872,0.00057727494,0.004227007,0.9482549,0.000028230656,0.0000119361075],"genre_scores_gemma":[0.00026632263,0.0008297307,0.0013532526,0.0005108943,0.00011934034,0.00079320295,0.9959531,0.0000299127,0.0001442652],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99429435,0.00075031177,0.003261444,0.0006164136,0.0007573238,0.00032017523],"domain_scores_gemma":[0.98630154,0.000565054,0.0038847711,0.0014481889,0.0076090153,0.0001914182],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0024005654,0.00046634104,0.0016200813,0.00069531513,0.0001479949,0.000030500396,0.0008881924,0.0007331056,0.000057515797],"category_scores_gemma":[0.01565866,0.00031864885,0.00081247103,0.002827181,0.00049998245,0.00025782615,0.00025464347,0.0007958644,0.000003948754],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003876898,0.001427681,0.00040990874,0.019217724,0.00024780646,1.1163061e-7,0.00021354052,4.7626483e-7,0.0008431985,0.00007828096,0.9660856,0.01143687],"study_design_scores_gemma":[0.001186616,0.0003577918,0.023127431,0.008763417,0.00020992951,0.000021583177,0.00003539156,0.000051530336,0.00036371313,0.00003110286,0.9656127,0.00023879395],"about_ca_topic_score_codex":0.000057929803,"about_ca_topic_score_gemma":0.000014911269,"teacher_disagreement_score":0.047698185,"about_ca_system_score_codex":0.0001285364,"about_ca_system_score_gemma":0.0008734338,"threshold_uncertainty_score":0.99992657},"labels":[],"label_agreement":null},{"id":"W4233136200","doi":"10.1164/ajrccm.176.12.1289a","title":"Atypical Coverage for Community-acquired Pneumonia","year":2007,"lang":"en","type":"article","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Alexandra Hospital; University of Alberta Hospital; Sturgeon Community Hospital; Grey Nuns Community Hospital","funders":"","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Intensive care medicine; Internal medicine","score_opus":0.02987435490529451,"score_gpt":0.3551373556599488,"score_spread":0.3252630007546543,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4233136200","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98403484,0.0015387534,0.008863392,0.003919478,0.00041843098,0.00019906287,0.000009442013,0.000026851822,0.0009897627],"genre_scores_gemma":[0.98808914,0.000038483537,0.00024531633,0.010602104,0.0009774074,0.000004676623,0.0000025473591,0.000025138283,0.000015185602],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.99817544,0.00022791965,0.00071406947,0.00014686145,0.0003726337,0.00036308137],"domain_scores_gemma":[0.99643534,0.0015938923,0.00019554343,0.0002408006,0.00083497976,0.0006994358],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013921127,0.00019809771,0.00073850923,0.00028012326,0.00034583124,0.000012853182,0.00011630002,0.000092302456,0.0000366594],"category_scores_gemma":[0.0020857404,0.00014105013,0.00017674106,0.00029780157,0.0018500712,0.000099549565,0.00003074699,0.0006096478,0.0000018615475],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0066926475,0.0008400368,0.16130733,0.0011575464,0.00036222956,0.00144746,0.006074798,0.0000029988853,0.3255762,0.005901265,0.0012466428,0.48939088],"study_design_scores_gemma":[0.008853171,0.084266,0.49936488,0.0012187555,0.0013705448,0.0040933997,0.03858607,0.0000068729614,0.0035493267,0.0008996595,0.35723183,0.0005594751],"about_ca_topic_score_codex":0.000008985576,"about_ca_topic_score_gemma":0.0000088407005,"teacher_disagreement_score":0.4888314,"about_ca_system_score_codex":0.0000848861,"about_ca_system_score_gemma":0.00015733388,"threshold_uncertainty_score":0.68166643},"labels":[],"label_agreement":null},{"id":"W4234877267","doi":"10.1164/ajrccm.184.11.1314a","title":"Further Appraisal of the Evidence Underlying Performance Measures for Community-acquired Pneumonia","year":2011,"lang":"en","type":"letter","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine","score_opus":0.10923910179365379,"score_gpt":0.37145180724882426,"score_spread":0.2622127054551705,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4234877267","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.63758147,0.012525767,0.0010433013,0.345033,0.0023093496,0.0007971661,0.00004158958,0.000038194998,0.0006301783],"genre_scores_gemma":[0.8355744,0.00016514373,0.00006001068,0.16242458,0.0016844489,0.000018526527,0.0000019250906,0.00004968666,0.000021307469],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9967329,0.0009014464,0.0009848764,0.00022067067,0.0007737181,0.00038637794],"domain_scores_gemma":[0.99433714,0.0026169573,0.0007127974,0.00059454294,0.0015038454,0.00023471225],"candidate_categories":["sts","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0011611148,0.00036866337,0.001285054,0.00028823118,0.00037983453,0.000013572032,0.00042458624,0.00029014502,0.000031350934],"category_scores_gemma":[0.0033628403,0.00021421896,0.00036972848,0.00033371887,0.004060818,0.00014081337,0.00007572392,0.0023568277,8.252794e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0038663067,0.0007466573,0.1907772,0.026483068,0.0025610507,0.0009876112,0.039210998,0.0000096803915,0.17106116,0.00031491436,0.11454158,0.44943976],"study_design_scores_gemma":[0.003016997,0.0476726,0.074138425,0.018130148,0.004735703,0.0023842384,0.0198624,0.000006393106,0.0016179924,0.0001406303,0.827537,0.000757464],"about_ca_topic_score_codex":0.000037394086,"about_ca_topic_score_gemma":0.0000064696655,"teacher_disagreement_score":0.7129954,"about_ca_system_score_codex":0.00008146602,"about_ca_system_score_gemma":0.0005168496,"threshold_uncertainty_score":0.99994475},"labels":[],"label_agreement":null},{"id":"W4236249820","doi":"10.7326/0003-4819-151-7-200910060-01004","title":"Community-Acquired Pneumonia","year":2009,"lang":"en","type":"article","venue":"Annals of Internal Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Intensive care unit; Pediatrics; Intensive care medicine; Pneumococcal pneumonia; Streptococcus pneumoniae; Internal medicine","score_opus":0.07975358440130827,"score_gpt":0.3835833464313203,"score_spread":0.30382976203001205,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4236249820","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8988068,0.00034442134,0.00014344156,0.052686032,0.0002874661,0.00013959939,0.0000034509,0.000070447146,0.047518328],"genre_scores_gemma":[0.97065496,0.00013708409,0.000020394584,0.027576065,0.0003244696,0.0000027302542,0.0000053413382,0.00001003057,0.0012689399],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988769,0.00009628244,0.0004369019,0.00010842099,0.0002721515,0.00020930842],"domain_scores_gemma":[0.99890006,0.00008217739,0.00014650234,0.0003807045,0.0002833486,0.00020718497],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039925193,0.0001437795,0.00043186196,0.00022359767,0.00008607122,0.0000034885534,0.00015936275,0.00007386431,0.00024750686],"category_scores_gemma":[0.00040611232,0.00010008397,0.00012473688,0.00021232395,0.00022060148,0.00006292681,0.000023962493,0.00031059352,0.00003470631],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027138504,0.0006190665,0.0128811095,0.00008196274,0.00015913673,0.00011811136,0.0010890694,0.0000023842997,0.9387709,0.0008953992,0.017402742,0.027708732],"study_design_scores_gemma":[0.002692476,0.01426988,0.7666263,0.0025331187,0.00015797466,0.0009256504,0.00076081196,0.00006688684,0.06955059,0.0026074045,0.13955773,0.00025119295],"about_ca_topic_score_codex":0.00017543529,"about_ca_topic_score_gemma":0.0000071380173,"teacher_disagreement_score":0.8692203,"about_ca_system_score_codex":0.000011986066,"about_ca_system_score_gemma":0.000034160563,"threshold_uncertainty_score":0.4081306},"labels":[],"label_agreement":null},{"id":"W4236714051","doi":"10.1093/ofid/ofw172.1387","title":"Activity of Imipenem-Relebactam (MK-7655) Against Enterobacteriaceae and Pseudomonas aeruginosa From Respiratory Tract Infections in North America—SMART 2015","year":2016,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Pseudomonas aeruginosa; Enterobacteriaceae; Microbiology; Imipenem; Respiratory tract infections; Pathogenic organism; Respiratory system; Antibiotics; Biology; Internal medicine; Bacteria; Escherichia coli; Antibiotic resistance","score_opus":0.012640713542566406,"score_gpt":0.2758139389328558,"score_spread":0.26317322539028937,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4236714051","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99375284,0.00013555588,0.000069211266,0.00091080903,0.000388343,0.0010842207,0.0006960548,0.00013641117,0.002826536],"genre_scores_gemma":[0.9980614,0.0003669889,0.000007692438,0.001022215,0.00009548895,0.0002366475,0.000056746743,0.00005279354,0.00010000499],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978256,0.00024120105,0.0005464974,0.0006266055,0.0002525965,0.0005074862],"domain_scores_gemma":[0.9980567,0.00033072426,0.00035067578,0.0006502205,0.00014538951,0.00046626906],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00011635238,0.0003975243,0.0007773819,0.00040264064,0.00026084695,0.00009311432,0.0002007203,0.00016269629,0.0002622922],"category_scores_gemma":[0.00029968345,0.000301382,0.00022742733,0.0005397781,0.00036658422,0.00085754675,0.00029357822,0.0002566347,0.000069886446],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015010932,0.0027752228,0.92368317,0.000032455846,0.00015373057,0.00003733309,0.000050558458,0.0000077382565,0.05533104,0.000020267007,0.0011395891,0.016618812],"study_design_scores_gemma":[0.004228548,0.0010143386,0.9752946,0.00024768448,0.00018513187,0.000026030568,0.000060535604,0.0000074476516,0.0016374243,0.00008692509,0.016851943,0.00035937806],"about_ca_topic_score_codex":0.0010778544,"about_ca_topic_score_gemma":0.005244027,"teacher_disagreement_score":0.053693615,"about_ca_system_score_codex":0.0002487223,"about_ca_system_score_gemma":0.00034296172,"threshold_uncertainty_score":0.99994385},"labels":[],"label_agreement":null},{"id":"W4238614936","doi":"10.14745/ccdr.v36i00a12f","title":"Mise à jour sur l’utilisation des vaccins conjugués contre le pneumocoque chez les enfants","year":2010,"lang":"fr","type":"article","venue":"Relevé des maladies transmissibles au Canada","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Gynecology","score_opus":0.01511400901348016,"score_gpt":0.23638779169596943,"score_spread":0.22127378268248926,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4238614936","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95515645,0.01799518,0.00025827813,0.005683913,0.0036610698,0.00080974796,0.0003572522,0.00015331399,0.015924817],"genre_scores_gemma":[0.96801984,0.011402541,0.00015081535,0.0005355533,0.0013075353,0.00006461542,0.000048852344,0.00013873426,0.01833153],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9957781,0.00030335717,0.0009634065,0.00072338834,0.00058796257,0.0016437721],"domain_scores_gemma":[0.99669033,0.00056086027,0.00026326696,0.0006406583,0.0005224381,0.0013224279],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005105927,0.00077470776,0.00096013956,0.00026629452,0.0016657595,0.00012746443,0.00036026607,0.00065184286,0.0022030778],"category_scores_gemma":[0.00042650607,0.0007516448,0.00036256292,0.0005998757,0.0013531495,0.00045116525,0.000034902216,0.0014069949,0.000031529384],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022773775,0.0007185033,0.5778244,0.011226774,0.0010958703,0.0010489641,0.0032624046,0.00043886484,0.28566197,0.0033956137,0.0050772843,0.1100216],"study_design_scores_gemma":[0.0031090197,0.00033971257,0.588024,0.004819168,0.0007083613,0.0008971398,0.0023424025,0.00084567076,0.021473138,0.0003529597,0.37618095,0.00090748887],"about_ca_topic_score_codex":0.8143917,"about_ca_topic_score_gemma":0.9935878,"teacher_disagreement_score":0.37110364,"about_ca_system_score_codex":0.00096252654,"about_ca_system_score_gemma":0.01030442,"threshold_uncertainty_score":0.9996339},"labels":[],"label_agreement":null},{"id":"W4239966738","doi":"10.1097/00006454-200007000-00033","title":"Current abstracts","year":2000,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Current (fluid)","score_opus":0.010548295610929936,"score_gpt":0.27286304746570167,"score_spread":0.2623147518547717,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4239966738","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9869619,0.0013439365,0.000024243032,0.0014232834,0.0009034081,0.00020272753,0.0000065714853,0.000108592525,0.009025318],"genre_scores_gemma":[0.9892755,0.004501506,0.000002396521,0.00078721397,0.004864567,0.000013083944,0.0000016393358,0.00002024661,0.000533855],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99881905,0.000081096216,0.00032918944,0.00013024853,0.00032424476,0.0003161921],"domain_scores_gemma":[0.9988684,0.00007107386,0.000112760725,0.00024130118,0.00010750199,0.00059895497],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00026386822,0.00015224784,0.00015493137,0.00015696955,0.0006586881,0.00007472088,0.00009111261,0.000042485677,0.002291079],"category_scores_gemma":[0.00011739675,0.00009122462,0.00026496756,0.00033175168,0.000054682776,0.00010728248,0.000012796762,0.00073955004,0.0010801665],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012737942,0.0010092811,0.93944275,0.00006861768,0.00008827371,0.00027913085,0.00013775751,0.0012686936,0.000069291564,0.00003768427,0.01423468,0.043236442],"study_design_scores_gemma":[0.0011038727,0.00015781696,0.8970714,0.000019704552,0.0008584961,0.0034672748,0.000009160093,0.000050104733,0.000003158489,0.000978406,0.09612248,0.00015808757],"about_ca_topic_score_codex":0.0000042716415,"about_ca_topic_score_gemma":0.0000011811663,"teacher_disagreement_score":0.0818878,"about_ca_system_score_codex":0.00009316207,"about_ca_system_score_gemma":0.00043355563,"threshold_uncertainty_score":0.9996976},"labels":[],"label_agreement":null},{"id":"W4240447854","doi":"10.1503/cmaj.1090019","title":"Efficacy of pneumococcal polysaccharide vaccine","year":2009,"lang":"en","type":"article","venue":"Canadian Medical Association Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Pneumococcal vaccine; Pneumococcal infections; Vaccination; Pneumococcal polysaccharide vaccine; Medicine; Pneumococcal vaccination; Streptococcus pneumoniae; Immunology; Intensive care medicine; Pneumococcal disease; Family medicine; Microbiology; Biology","score_opus":0.007003898520255866,"score_gpt":0.25847182170178257,"score_spread":0.2514679231815267,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4240447854","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.90247345,0.00008152964,0.000043679993,0.09222618,0.0004962296,0.000110264904,0.000006030635,0.000022518387,0.0045401505],"genre_scores_gemma":[0.98376,0.00006485996,0.000021357731,0.014572315,0.0012449239,9.952506e-7,0.000002513734,0.000007784283,0.000325256],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982204,0.00006989897,0.0004534379,0.000102104525,0.0008054035,0.00034877768],"domain_scores_gemma":[0.9975767,0.000095431686,0.0001850162,0.000102438586,0.00032135128,0.0017190725],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000678533,0.000094748146,0.00027203807,0.0002785444,0.00015702602,0.000019400863,0.000101785365,0.000299972,0.002135177],"category_scores_gemma":[0.0018068661,0.000078667945,0.00016422938,0.00030042298,0.000015406025,0.00006506336,0.000004233626,0.00081089034,0.0000906523],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000116143645,0.00075267634,0.6146015,0.000027675773,0.0005888706,0.0022881883,0.0005488298,0.00001744422,0.063677385,0.0012349283,0.12210638,0.19403999],"study_design_scores_gemma":[0.002044848,0.00029026993,0.8187441,0.00008322796,0.00006726388,0.0012884947,0.00004500584,0.000041529613,0.0002896809,0.00009082893,0.17692657,0.00008818507],"about_ca_topic_score_codex":0.00027426498,"about_ca_topic_score_gemma":0.0015195254,"teacher_disagreement_score":0.20414262,"about_ca_system_score_codex":0.00049033936,"about_ca_system_score_gemma":0.002482082,"threshold_uncertainty_score":0.99877703},"labels":[],"label_agreement":null},{"id":"W4240755291","doi":"10.1007/bf03399445","title":"Global Pneumococcal Disease and Policies for Control","year":2014,"lang":"en","type":"article","venue":"Pneumonia","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network","funders":"","keywords":"Serotype; Public health; Pneumococcal disease; Disease control; Pneumococcal conjugate vaccine; Geography; Latin Americans; Global health; Medicine; Demography; Environmental health; Streptococcus pneumoniae; Virology; Political science; Biology; Sociology","score_opus":0.009996271622605711,"score_gpt":0.2827138388198501,"score_spread":0.27271756719724444,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4240755291","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98150206,0.000110795016,0.0031193842,0.012036583,0.0002322746,0.0006373,0.00009817869,0.00015555801,0.0021078587],"genre_scores_gemma":[0.9962405,0.0000139882995,0.000036331945,0.0029601532,0.00037005031,0.00011084142,0.0000073764886,0.000015580674,0.00024516333],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99917746,0.00003229691,0.00016734989,0.00022961009,0.000112725415,0.00028058726],"domain_scores_gemma":[0.9991738,0.00009313744,0.000041735184,0.000214537,0.00007035556,0.00040639075],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000110605695,0.00014512405,0.00024390785,0.00004982338,0.00017270012,0.000031188403,0.00004748217,0.00006189186,0.000009253809],"category_scores_gemma":[0.00023119556,0.00011683103,0.000109890956,0.00009839395,0.00011665278,0.000050427898,0.000020182943,0.00006635637,0.000022095412],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002183314,0.00021447154,0.9042878,0.00019788984,0.00012011211,0.000012276212,0.000055488304,0.000039034967,0.076354794,0.012017151,0.0006042571,0.005878373],"study_design_scores_gemma":[0.0018068056,0.00032298025,0.9078591,0.000030028568,0.00022577429,0.00006109503,0.000011650885,0.0018641218,0.00004177777,0.0015075987,0.08613099,0.00013810197],"about_ca_topic_score_codex":0.000015107987,"about_ca_topic_score_gemma":0.000015002528,"teacher_disagreement_score":0.085526735,"about_ca_system_score_codex":0.000039171875,"about_ca_system_score_gemma":0.00006340248,"threshold_uncertainty_score":0.47642308},"labels":[],"label_agreement":null},{"id":"W4240761324","doi":"10.21203/rs.2.13786/v2","title":"Antibiotic resistance of Streptococcus pneumonia serotypes in Kisii, Kenya","year":2020,"lang":"en","type":"preprint","venue":"Research Square","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"North York General Hospital","funders":"","keywords":"Streptococcus pneumoniae; Erythromycin; Pneumonia; Tetracycline; Microbiology; Serotype; Trimethoprim; Ofloxacin; Sulfamethoxazole; Pneumococcal pneumonia; Antibiotics; Medicine; Chloramphenicol; Drug resistance; Internal medicine; Biology; Ciprofloxacin","score_opus":0.07933291416801512,"score_gpt":0.41061551103118943,"score_spread":0.3312825968631743,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4240761324","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9755647,0.0012271021,0.00001686242,0.0075942157,0.00023782613,0.0028510755,0.0001875886,0.00012058392,0.012200004],"genre_scores_gemma":[0.9978218,0.0005637675,0.00007265511,0.00007657619,0.00023478789,0.00009317174,0.000058921334,0.000055174598,0.0010231294],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.996401,0.0004722368,0.0006247429,0.0007570667,0.0011289155,0.0006160116],"domain_scores_gemma":[0.9976052,0.00028037987,0.00015351608,0.0009977437,0.0006301041,0.0003330755],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0008513353,0.0002850543,0.00079914485,0.0008137454,0.000108115906,0.00004360185,0.000352638,0.0004885915,0.00013044495],"category_scores_gemma":[0.0010113476,0.00025517013,0.00025803185,0.0011147298,0.0003242784,0.000048386286,0.00065450877,0.0027620606,0.00011680635],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043503937,0.0010308659,0.72745246,0.01698772,0.0002693383,0.0013293391,0.0011083055,0.00023380709,0.24555665,0.0010510182,0.0031415098,0.0014039499],"study_design_scores_gemma":[0.001163399,0.00068422937,0.9578625,0.007820239,0.000056087483,0.000008524122,0.0005136163,0.00018553865,0.013283741,0.0013583765,0.0167158,0.00034793653],"about_ca_topic_score_codex":0.00017981784,"about_ca_topic_score_gemma":0.0004779238,"teacher_disagreement_score":0.23227291,"about_ca_system_score_codex":0.000303523,"about_ca_system_score_gemma":0.0012841799,"threshold_uncertainty_score":0.99999005},"labels":[],"label_agreement":null},{"id":"W4241675738","doi":"10.1093/jac/dkv234","title":"Clinical cure rates in subjects treated with azithromycin for community-acquired respiratory tract infections caused by azithromycin-susceptible or azithromycin-resistant<i>Streptococcus pneumoniae</i>: analysis of Phase 3 clinical trial data—authors' response: Figure 1.","year":2015,"lang":"en","type":"letter","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Health Sciences Centre","funders":"","keywords":"Azithromycin; Streptococcus pneumoniae; Medicine; Respiratory tract infections; Clinical trial; Internal medicine; Respiratory system; Antibiotics; Microbiology; Biology","score_opus":0.1343996409041772,"score_gpt":0.4402798804865825,"score_spread":0.3058802395824053,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4241675738","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92614543,0.00021195486,0.00015507088,0.065515965,0.0011028771,0.003496151,0.0032416189,0.00009586748,0.0000350313],"genre_scores_gemma":[0.64309394,0.0035836182,0.00120637,0.32182422,0.015477234,0.00030488567,0.009386529,0.0015922191,0.0035309955],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9845943,0.005697968,0.0063359775,0.0012164623,0.0010960487,0.0010592372],"domain_scores_gemma":[0.98383707,0.0047506,0.005669574,0.0026984792,0.0024078346,0.00063647295],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["metaepi_narrow","research_integrity"],"category_scores_codex":[0.010330324,0.001344273,0.0065460694,0.0026311006,0.00046733377,0.00018033946,0.0013701789,0.0031613961,0.00027678913],"category_scores_gemma":[0.0023314294,0.0009788198,0.0022480018,0.0036030745,0.0013077861,0.00058900716,0.00012246954,0.006739517,0.000006813686],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.11294541,0.013701824,0.027709365,0.00033601836,0.008873296,0.0007343301,0.0002701689,0.000027645976,0.16579685,1.6099894e-7,0.6692175,0.00038741968],"study_design_scores_gemma":[0.21034217,0.07369604,0.011756226,0.0019045264,0.012288023,0.00019247652,0.00025360315,0.000085031825,0.0053685135,0.000004042633,0.6827992,0.0013101507],"about_ca_topic_score_codex":0.00014371298,"about_ca_topic_score_gemma":0.0006022107,"teacher_disagreement_score":0.28305155,"about_ca_system_score_codex":0.0005136163,"about_ca_system_score_gemma":0.0053246254,"threshold_uncertainty_score":0.99993086},"labels":[],"label_agreement":null},{"id":"W4243607164","doi":"10.1016/j.vaccine.2015.06.104","title":"Effectiveness of three pneumococcal conjugate vaccines to prevent invasive pneumococcal disease in Quebec, Canada","year":2016,"lang":"en","type":"letter","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Centre hospitalier universitaire de Québec; Institut National de Santé Publique du Québec; Université Laval","funders":"","keywords":"Pneumococcal disease; Pneumococcal conjugate vaccine; Pneumococcal infections; Medicine; Streptococcus pneumoniae; Virology; Immunology; Microbiology; Biology; Antibiotics","score_opus":0.009929911376414404,"score_gpt":0.24486953666325387,"score_spread":0.23493962528683945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4243607164","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.64933133,0.00021390858,0.000023718045,0.34606606,0.0010182416,0.0028334798,0.00028898873,0.000063445914,0.00016085913],"genre_scores_gemma":[0.8725639,0.000112160196,0.0000061954797,0.11785372,0.003891246,0.0011303037,0.00041582572,0.00025104004,0.0037755873],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9963947,0.0003845725,0.0009324235,0.00090521266,0.0005694791,0.00081360753],"domain_scores_gemma":[0.9968228,0.0009665935,0.0003035984,0.0010218854,0.00035393547,0.0005311932],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00030002007,0.0007236595,0.0015648913,0.0006330837,0.00007782843,0.000019777024,0.0003551067,0.00052588625,0.0002494812],"category_scores_gemma":[0.0005232861,0.0005242659,0.00031628253,0.00054979784,0.000024610446,0.00010393296,0.00020279054,0.0011810635,0.00005854903],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00189563,0.00072161166,0.40725034,0.01094351,0.00095055497,0.009187269,0.00007159753,0.000120034805,0.29570115,0.000037410966,0.2720159,0.0011049808],"study_design_scores_gemma":[0.0026215846,0.00036865575,0.6992936,0.0047889785,0.00037969206,0.000040684194,0.0000052601486,0.0000041666103,0.0053761937,0.00009901647,0.28639632,0.00062581804],"about_ca_topic_score_codex":0.3102122,"about_ca_topic_score_gemma":0.847629,"teacher_disagreement_score":0.5374168,"about_ca_system_score_codex":0.0010042511,"about_ca_system_score_gemma":0.0038169397,"threshold_uncertainty_score":0.9997209},"labels":[],"label_agreement":null},{"id":"W4244320858","doi":"10.1503/cmaj.051576","title":"Corrections","year":2006,"lang":"en","type":"article","venue":"Canadian Medical Association Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Computer science; Data science; World Wide Web; Information retrieval","score_opus":0.004941787720151322,"score_gpt":0.23112790572190858,"score_spread":0.22618611800175725,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4244320858","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.55993927,0.00015172966,0.00046139967,0.16852021,0.0050856574,0.00018587902,0.000020863536,0.00011030351,0.2655247],"genre_scores_gemma":[0.96179533,0.00003321589,0.000033101187,0.021154126,0.0048611914,0.000005901856,0.000008929464,0.000014422743,0.012093754],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987268,0.000049788803,0.00023683766,0.00007303556,0.00062764174,0.00028591647],"domain_scores_gemma":[0.99847823,0.000050177103,0.00007624326,0.000056870766,0.00028043237,0.001058019],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004337903,0.00006163056,0.00011884892,0.00019664844,0.00036621012,0.00004059348,0.0000449833,0.0002484399,0.0047275284],"category_scores_gemma":[0.00054861343,0.00005345199,0.000100028774,0.00023587426,0.000023078921,0.000053226046,0.000003008671,0.0007048348,0.00048236246],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000014778738,0.00004933523,0.5161417,0.000002468326,0.000047907244,0.00046104772,0.000018677909,0.0000067870506,0.00019651387,0.00035287454,0.47566053,0.0070606484],"study_design_scores_gemma":[0.00039921756,0.000032771008,0.2348937,0.000018565353,0.0000241854,0.0013590009,0.000040044397,0.00005610712,0.000013314159,0.00013434565,0.7629795,0.000049250055],"about_ca_topic_score_codex":0.0023045416,"about_ca_topic_score_gemma":0.027432038,"teacher_disagreement_score":0.40185606,"about_ca_system_score_codex":0.00085967476,"about_ca_system_score_gemma":0.00262792,"threshold_uncertainty_score":0.99618226},"labels":[],"label_agreement":null},{"id":"W4245112225","doi":"10.21203/rs.2.9748/v1","title":"Effectiveness of Pneumococcal Conjugate Vaccination against Invasive Pneumococcal Disease among children with and those without HIV infection: A Systematic Review and Meta-Analysis","year":2019,"lang":"en","type":"review","venue":"Research Square","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Cochrane Library; Vaccination; Meta-analysis; Observational study; Serotype; Pneumococcal conjugate vaccine; Pediatrics; Systematic review; Pneumococcal infections; Randomized controlled trial; MEDLINE; Internal medicine; Streptococcus pneumoniae; Immunology; Biology; Antibiotics","score_opus":0.09231268132221634,"score_gpt":0.417187475179691,"score_spread":0.32487479385747464,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4245112225","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0065936577,0.97365487,0.00001894674,0.00006710653,0.000016077307,0.019186461,0.00028609193,0.000057855454,0.00011892805],"genre_scores_gemma":[0.042058103,0.9534965,0.0000031358204,0.000027318749,0.000031895805,0.0036841426,0.00040223278,0.00008668537,0.00020996272],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99133533,0.004989631,0.0010989362,0.0010446275,0.0010253729,0.00050608977],"domain_scores_gemma":[0.9948372,0.0015920727,0.0007076078,0.001150426,0.0010761471,0.00063654984],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0033182094,0.0007258382,0.0084819645,0.0015191939,0.00027943047,0.0001062596,0.00017954959,0.00032621712,0.00004872065],"category_scores_gemma":[0.0012945796,0.00042318864,0.001688256,0.0024897608,0.00034733443,0.0002456254,0.00022903335,0.0011623492,0.000027595639],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030002027,0.00018772716,0.025923051,0.8961378,0.077345975,0.000030518433,0.000023158047,0.0000044307585,0.000008545402,0.00003466049,0.0000033207336,0.00027086696],"study_design_scores_gemma":[0.0006147467,0.0005516829,0.090998136,0.21894006,0.68789077,0.0001242475,0.000011872277,0.000010451232,0.000003316108,0.0000050706485,0.00042338792,0.0004262472],"about_ca_topic_score_codex":0.000044299253,"about_ca_topic_score_gemma":0.000038073053,"teacher_disagreement_score":0.6771977,"about_ca_system_score_codex":0.00023427518,"about_ca_system_score_gemma":0.0008729174,"threshold_uncertainty_score":0.999822},"labels":[],"label_agreement":null},{"id":"W4246054531","doi":"10.3410/f.717956463.793461168","title":"Faculty Opinions recommendation of Macrolide-based regimens and mortality in hospitalized patients with community-acquired pneumonia: a systematic review and meta-analysis.","year":2012,"lang":"en","type":"review","venue":"Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Pneumonia; Community-acquired pneumonia; Meta-analysis; Medicine; Intensive care medicine; Internal medicine; Family medicine","score_opus":0.07802014913757857,"score_gpt":0.385994402000597,"score_spread":0.3079742528630184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4246054531","genre_codex":"review","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000046370496,0.824944,0.000017935015,0.034564786,0.00007907565,0.0076581254,0.13265261,0.00003997868,0.0000388158],"genre_scores_gemma":[0.00009090037,0.28109577,0.00014725387,0.003843307,0.000019840096,0.0013992087,0.7131666,0.0000424356,0.00019464696],"study_design_codex":"systematic_review","study_design_gemma":"not_applicable","domain_scores_codex":[0.99242705,0.002756988,0.0028578665,0.0005592701,0.0010456023,0.00035322356],"domain_scores_gemma":[0.9912366,0.0003300505,0.0028582518,0.0018069623,0.0033649222,0.00040316844],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0030907963,0.0007516835,0.0073941266,0.00067437405,0.00025522395,0.000068421374,0.0005396892,0.00051119167,0.000079814905],"category_scores_gemma":[0.0025991853,0.00037723116,0.0019333744,0.0040882304,0.0004644301,0.00028267215,0.00025210233,0.0010095296,0.000004010042],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000048359893,0.0008668378,0.0003964014,0.97271067,0.018957907,3.439605e-7,0.00012252673,2.4895472e-8,7.106969e-8,0.00007758751,0.006250791,0.0006120178],"study_design_scores_gemma":[0.0006209059,0.00015452875,0.006690422,0.15946743,0.27355987,0.00003205921,0.00000898508,0.0000014145297,1.2756065e-7,0.0000025009297,0.55917716,0.00028456814],"about_ca_topic_score_codex":0.000041068964,"about_ca_topic_score_gemma":0.000011171125,"teacher_disagreement_score":0.8132432,"about_ca_system_score_codex":0.00013616646,"about_ca_system_score_gemma":0.00039494407,"threshold_uncertainty_score":0.999868},"labels":[],"label_agreement":null},{"id":"W4246699522","doi":"10.7326/0003-4819-133-4-200008150-00013","title":"Update in Infectious Diseases","year":2000,"lang":"en","type":"review","venue":"Annals of Internal Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Streptococcus pneumoniae; Antibiotic resistance; Pharyngitis; Vancomycin-resistant Enterococcus; Pneumonia; Infectious disease (medical specialty); Antibiotics; Virology; Vancomycin; Intensive care medicine; Immunology; Internal medicine; Microbiology; Disease; Staphylococcus aureus","score_opus":0.07070550459023942,"score_gpt":0.41758667002809813,"score_spread":0.34688116543785874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4246699522","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0002255298,0.9839103,0.0000040889136,0.00081228686,0.00045755968,0.0004579368,0.000040968116,0.000049439175,0.014041864],"genre_scores_gemma":[0.00071346824,0.9952188,0.0000010524567,0.0025170515,0.00072697224,0.00005218167,0.000051899646,0.000045655677,0.00067292387],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978173,0.00012564275,0.0011272539,0.0003189981,0.00031526788,0.00029558924],"domain_scores_gemma":[0.9986601,0.0001696608,0.00038262276,0.00040640563,0.000118965865,0.00026224682],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00019661995,0.00038334358,0.0024986044,0.0009908228,0.000023491595,0.0000046042305,0.00017755892,0.00023432705,0.0012244186],"category_scores_gemma":[0.00031903383,0.00024392051,0.00053581974,0.0005355057,0.0002466915,0.000053108095,0.000040263345,0.0006239892,0.0001636726],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000347511,0.0002792447,0.0010339062,0.009200197,0.00035872907,0.00044730215,0.00003335482,4.7958247e-7,0.0000029260648,0.00007420581,0.006613548,0.9819214],"study_design_scores_gemma":[0.0005706729,0.00073619885,0.00040334577,0.06653381,0.00069782906,0.0005829036,0.0000059681415,0.0000010204569,0.0000020366674,0.00010652035,0.93019766,0.000162026],"about_ca_topic_score_codex":0.00013442119,"about_ca_topic_score_gemma":0.000017778311,"teacher_disagreement_score":0.9817593,"about_ca_system_score_codex":0.000044004144,"about_ca_system_score_gemma":0.0002279601,"threshold_uncertainty_score":0.9996886},"labels":[],"label_agreement":null},{"id":"W4249079200","doi":"10.1155/2014/568786","title":"Selected Abstracts of the Critical Care Canada Forum 201, November 9 to 12, 2013, Toronto, Ontario","year":2014,"lang":"en","type":"article","venue":"Canadian Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"St. Michael's Hospital; Sunnybrook Health Science Centre; Mount Sinai Hospital; Health Sciences Centre; University Health Network; Hospital for Sick Children","funders":"","keywords":"Medicine; Ventilator-associated pneumonia; Pneumonia; Infection control; Emergency medicine; Incidence (geometry); Intensive care medicine; Internal medicine","score_opus":0.012844949467637685,"score_gpt":0.2475897884435443,"score_spread":0.23474483897590662,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4249079200","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.957513,0.00044775792,0.000023372237,0.010815205,0.0026748236,0.00037881,0.000061186285,0.000016189306,0.028069656],"genre_scores_gemma":[0.98048073,0.000001505297,0.00002721814,0.018094575,0.00042241713,0.00000781027,0.000001802634,0.000029459681,0.0009344892],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980892,0.00010910469,0.00048800829,0.00020788815,0.00043796105,0.0006678579],"domain_scores_gemma":[0.9967133,0.000071438815,0.00011569306,0.00042563368,0.0007681514,0.0019057984],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00021306101,0.00020260082,0.00030720665,0.000121276666,0.00052793394,0.000042897696,0.0002423561,0.00016308969,0.0013041721],"category_scores_gemma":[0.0005474577,0.00015098265,0.00013140363,0.00017847157,0.00008945075,0.000110300294,0.000025663488,0.00068176293,0.000021946924],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004554316,0.000060982995,0.5061361,0.000084493666,0.00013096901,0.00024282464,0.0009587154,0.00025435243,0.012401468,0.0002389484,0.47635308,0.0030925267],"study_design_scores_gemma":[0.00032742135,0.00018818011,0.3900307,0.00007275624,0.000050464416,0.00022662777,0.00025231234,0.0000018895788,0.00057857495,0.0000068388426,0.60814613,0.00011807894],"about_ca_topic_score_codex":0.98520124,"about_ca_topic_score_gemma":0.99998176,"teacher_disagreement_score":0.13179307,"about_ca_system_score_codex":0.0037703884,"about_ca_system_score_gemma":0.019198814,"threshold_uncertainty_score":0.99960876},"labels":[],"label_agreement":null},{"id":"W4251036610","doi":"10.1007/bf03404065","title":"The Epidemiology of Invasive Pneumococcal Disease in British Columbia Following Implementation of an Infant Immunization Program: Increases in Herd Immunity and Replacement Disease","year":2012,"lang":"en","type":"article","venue":"Canadian Journal of Public Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; Provincial Laboratory of Public Health; University of British Columbia; Alberta Health Services; BC Centre for Disease Control","funders":"","keywords":"Herd immunity; Epidemiology; Pneumococcal conjugate vaccine; Medicine; Pneumococcal disease; Incidence (geometry); Serotype; Herd; Pediatrics; Immunization; Vaccination; Public health; Environmental health; Immunology; Streptococcus pneumoniae; Veterinary medicine; Biology; Internal medicine; Antibody","score_opus":0.046447863923815724,"score_gpt":0.3623850441608675,"score_spread":0.31593718023705175,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4251036610","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948284,0.0024280201,0.000009472109,0.0020220913,0.00009634095,0.00057208294,0.000036741763,0.000002702422,0.000004137316],"genre_scores_gemma":[0.99913317,0.0003511914,0.000035879348,0.00036492114,0.000039810304,0.000024618139,0.000039235736,0.000008282168,0.000002913747],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9973862,0.0011081406,0.00089682377,0.000078724326,0.00011056963,0.00041950835],"domain_scores_gemma":[0.9971541,0.00024134637,0.000479948,0.00016669696,0.00015745411,0.0018004215],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003975255,0.00006207532,0.0003272246,0.00024282462,0.00017970044,0.000025253488,0.00007794574,0.000036846814,0.000020152229],"category_scores_gemma":[0.0027946972,0.00006679691,0.00006333436,0.00035041687,0.00013859042,0.0003155884,0.000014849157,0.00021667442,7.278529e-8],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015033582,0.00018034545,0.97978634,0.000092125214,0.000025298357,0.000024405326,0.00047608794,0.0000037887205,0.000036720176,0.00003137198,0.000024783034,0.019303732],"study_design_scores_gemma":[0.0010069911,0.00051424094,0.9946589,0.00023856596,0.000023046032,0.00004325978,0.0027074623,0.000024334737,0.0000014933717,0.00005688855,0.00067713513,0.00004770206],"about_ca_topic_score_codex":0.38894844,"about_ca_topic_score_gemma":0.837616,"teacher_disagreement_score":0.44866762,"about_ca_system_score_codex":0.0004108564,"about_ca_system_score_gemma":0.0071328077,"threshold_uncertainty_score":0.9984958},"labels":[],"label_agreement":null},{"id":"W4251058845","doi":"10.3410/f.725255033.793503344","title":"Faculty Opinions recommendation of MapZ marks the division sites and positions FtsZ rings in Streptococcus pneumoniae.","year":2015,"lang":"en","type":"dataset","venue":"Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"FtsZ; Division (mathematics); Streptococcus pneumoniae; Microbiology; Biology; Bacterial protein; Bacteria; Genetics; Mathematics; Arithmetic","score_opus":0.03441958768213161,"score_gpt":0.36449616923846967,"score_spread":0.33007658155633807,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4251058845","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000020404183,0.0007533769,0.0000073750152,0.28456384,0.00037685488,0.0016784974,0.7124887,0.000028094597,0.000082814615],"genre_scores_gemma":[0.00019184258,0.00045466475,0.00006369491,0.0045763864,0.00024773547,0.00036559053,0.9935537,0.000027364875,0.0005190333],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9956475,0.0005544314,0.0015530342,0.00063890277,0.0012416899,0.00036445053],"domain_scores_gemma":[0.99295014,0.0002458133,0.001114585,0.001377732,0.0039354283,0.00037632277],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0016408787,0.0005172284,0.0009911121,0.0005546024,0.00033180707,0.000119308825,0.00076680805,0.00070905144,0.00021018944],"category_scores_gemma":[0.005081593,0.00028669956,0.00046838258,0.002152116,0.0005404883,0.00029677936,0.0005319426,0.0015722247,0.000029868932],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009651079,0.0005179248,0.00031233334,0.0039243074,0.000115974995,9.0194004e-7,0.00015627359,1.9507756e-7,0.000029212635,0.000089790046,0.9934029,0.0014405189],"study_design_scores_gemma":[0.0008745181,0.0002579298,0.040063992,0.011542597,0.00027700115,0.000085507556,0.00006878541,0.000014381569,0.000009801046,0.00003646759,0.946515,0.00025399317],"about_ca_topic_score_codex":0.00008213649,"about_ca_topic_score_gemma":0.000032600732,"teacher_disagreement_score":0.28106496,"about_ca_system_score_codex":0.00017280751,"about_ca_system_score_gemma":0.0006006736,"threshold_uncertainty_score":0.9999585},"labels":[],"label_agreement":null},{"id":"W4252365081","doi":"10.1139/w2012-073","title":"Serotype distribution of invasive <i>Streptococcus pneumoniae</i> in Canada during the introduction of the 13-valent pneumococcal conjugate vaccine, 2010","year":2012,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; Ste. Anne's Hospital; University of Manitoba; Mount Sinai Hospital; Public Health Agency of Canada","funders":"","keywords":"Serotype; Streptococcus pneumoniae; Pneumococcal conjugate vaccine; Conjugate vaccine; Pneumococcal infections; Epidemiology; Virology; Biology; Medicine; Pediatrics; Microbiology; Internal medicine; Antibiotics","score_opus":0.006343181424172701,"score_gpt":0.1956976036333489,"score_spread":0.1893544222091762,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4252365081","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9919999,0.0003563036,0.0000014704912,0.00568094,0.0015452831,0.00026474588,0.00012500191,0.0000011745611,0.000025151556],"genre_scores_gemma":[0.9993818,0.00003822158,8.626657e-7,0.00018227518,0.00032600237,0.00000387666,0.000012430558,0.0000080996415,0.00004643958],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99879164,0.00017123455,0.0005639664,0.00008877714,0.00005674946,0.00032761946],"domain_scores_gemma":[0.9988041,0.00006183282,0.00044807704,0.00022323646,0.00024772887,0.00021505223],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002772728,0.00011591887,0.00032343314,0.000106448126,0.00009948485,0.0000027827923,0.00016550897,0.00009507516,0.00006204719],"category_scores_gemma":[0.00021149393,0.00006945045,0.00011187124,0.00024778556,0.00014722972,0.000056619738,0.000019982117,0.00047244484,0.0000018497101],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015843334,0.0000149475345,0.51087856,0.000027378503,0.000038938564,0.000007868452,0.000084994106,0.00007933053,0.48737139,0.000010235746,0.0014352436,0.0000352609],"study_design_scores_gemma":[0.0005694215,0.000100534315,0.8749096,0.00007248944,0.000066166474,0.0013283207,0.00023514715,6.559463e-7,0.109110825,0.0000042791103,0.0135416845,0.000060876464],"about_ca_topic_score_codex":0.265735,"about_ca_topic_score_gemma":0.93695295,"teacher_disagreement_score":0.671218,"about_ca_system_score_codex":0.0006872053,"about_ca_system_score_gemma":0.003780863,"threshold_uncertainty_score":0.7391545},"labels":[],"label_agreement":null},{"id":"W4253477947","doi":"10.1128/aac.02899-14","title":"Telavancin for Hospital-Acquired Pneumonia: Clinical Response and 28-Day Survival","year":2014,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Pneumonia; Medicine; Intensive care medicine; Internal medicine","score_opus":0.020806012483340033,"score_gpt":0.31699172799956277,"score_spread":0.29618571551622275,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4253477947","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9750941,0.000016782125,0.00051795953,0.023036912,0.000599593,0.00047611416,0.000018350369,0.00006115182,0.00017903752],"genre_scores_gemma":[0.9834191,0.000740725,0.00018486383,0.014414427,0.00043032694,0.0000134078,0.00000997717,0.00004102775,0.0007461025],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988205,0.00012521034,0.00032943478,0.0003717662,0.00008590562,0.0002671897],"domain_scores_gemma":[0.9992205,0.00022056565,0.000090757094,0.00021511149,0.00006826363,0.00018481394],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00070158293,0.00019369574,0.00041491885,0.00006169959,0.00021839372,0.000041939704,0.000054166183,0.00017850827,0.00003014717],"category_scores_gemma":[0.00012832691,0.00015558058,0.00014107165,0.00007561656,0.00020600394,0.000060463233,0.000020672012,0.00010229868,0.000008671001],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025484222,0.0012703136,0.4576393,0.0001876885,0.00042005914,0.000022876562,0.0007185346,9.814335e-7,0.40735146,0.00014096027,0.06373287,0.06596653],"study_design_scores_gemma":[0.003967259,0.0013164865,0.51563054,0.00004923371,0.000057840276,0.000028241566,0.000021765094,0.00007427391,0.002751254,0.00003286942,0.47588643,0.00018383673],"about_ca_topic_score_codex":0.000008235361,"about_ca_topic_score_gemma":0.000004432591,"teacher_disagreement_score":0.41215354,"about_ca_system_score_codex":0.000013806621,"about_ca_system_score_gemma":0.000043783395,"threshold_uncertainty_score":0.63443923},"labels":[],"label_agreement":null},{"id":"W4253565764","doi":"10.1093/jac/dky252","title":"Preface","year":2018,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine","score_opus":0.01131689073052796,"score_gpt":0.28874917174492304,"score_spread":0.2774322810143951,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4253565764","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9842,0.000019836774,0.0005622701,0.011366089,0.0005437252,0.00007134779,0.0000010695933,0.000016538059,0.0032191486],"genre_scores_gemma":[0.98496616,0.00013704518,0.0008780916,0.011746531,0.0014946222,1.6453359e-7,2.7651808e-7,0.000018022276,0.0007590697],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994272,0.000015038702,0.00025621304,0.000064837055,0.00011265985,0.0001240695],"domain_scores_gemma":[0.9993295,0.000010768219,0.000170817,0.00010872731,0.0002884962,0.000091700276],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012904302,0.00007953624,0.00021096294,0.00011186496,0.00006428477,0.000014676104,0.00006568968,0.00006705707,0.00028663073],"category_scores_gemma":[0.000019771425,0.00005673228,0.0001598684,0.00013836141,0.00011234704,0.00007613543,0.0000059034383,0.00016718378,0.00005276959],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018366809,0.00016783409,0.0041822307,0.000010586752,0.00008886243,0.000021446425,0.0001756713,7.2681235e-7,0.9542319,0.000009195157,0.03870078,0.0022270568],"study_design_scores_gemma":[0.0020006192,0.0009347769,0.0102592725,0.000094344934,0.000040215207,0.002016272,0.00001475958,0.000004739109,0.51688105,0.000017921051,0.4676644,0.00007164386],"about_ca_topic_score_codex":0.0000012905296,"about_ca_topic_score_gemma":8.1611364e-7,"teacher_disagreement_score":0.4373509,"about_ca_system_score_codex":0.00003345518,"about_ca_system_score_gemma":0.00013570076,"threshold_uncertainty_score":0.31384054},"labels":[],"label_agreement":null},{"id":"W4254740556","doi":"10.33321/cdi.2020.44.40","title":"Invasive Pneumococcal Disease Surveillance, 1 July to 30 September 2019","year":2020,"lang":"en","type":"article","venue":"Communicable Diseases Intelligence","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"NSW Health Pathology; Queensland Health","keywords":"Pneumococcal disease; Serotype; Pneumococcal conjugate vaccine; Medicine; Quarter (Canadian coin); Conjugate vaccine; Streptococcus pneumoniae; Pediatrics; Pneumococcal infections; Virology; Immunization; Immunology; Biology; Microbiology; Geography; Antibody; Antibiotics","score_opus":0.038351545702430635,"score_gpt":0.3111481955868999,"score_spread":0.2727966498844692,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4254740556","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.852626,0.012236068,0.0085349195,0.047742177,0.0014188078,0.005465898,0.0017806834,0.002161656,0.06803374],"genre_scores_gemma":[0.985304,0.0006066358,0.00007945501,0.012718372,0.00018745792,0.000111393325,0.000084475505,0.000046122703,0.00086211495],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982193,0.00018820493,0.0004119731,0.00043623132,0.0003121437,0.0004321483],"domain_scores_gemma":[0.9961737,0.0003829792,0.000078112666,0.001255826,0.00023234605,0.001877048],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00008732386,0.00028380123,0.00045922748,0.000092533155,0.00027656445,0.000060291088,0.00061406475,0.00007282934,0.0013188554],"category_scores_gemma":[0.0011756577,0.00025498125,0.0002793608,0.0006075058,0.0002183444,0.00012822787,0.00051449134,0.0004015584,0.0062473402],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014655613,0.0025433747,0.78688407,0.0011044773,0.00054764294,0.0009651833,0.0011573429,0.006468065,0.020632124,0.0010687007,0.16602805,0.011135424],"study_design_scores_gemma":[0.0005959921,0.00090656325,0.32525975,0.0004148982,0.00032813163,0.000029645622,0.0003897668,0.0015683906,0.0016018215,0.0004010873,0.66756874,0.00093523826],"about_ca_topic_score_codex":0.000018958195,"about_ca_topic_score_gemma":0.000013166195,"teacher_disagreement_score":0.50154066,"about_ca_system_score_codex":0.00007671826,"about_ca_system_score_gemma":0.00041934606,"threshold_uncertainty_score":0.9999902},"labels":[],"label_agreement":null},{"id":"W4254850284","doi":"10.15766/mep_2374-8265.1117","title":"Structured Oral Examinations in Internal Medicine - Case E","year":2009,"lang":"en","type":"article","venue":"MedEdPORTAL","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; University of Saskatchewan","funders":"","keywords":"Medicine; Pleural effusion; Empyema; Internal medicine; Surgery","score_opus":0.0231746399633409,"score_gpt":0.32922028252091634,"score_spread":0.30604564255757544,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4254850284","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97288513,0.000047681886,0.000075982505,0.0024936777,0.000306976,0.00017549611,0.0000031334796,0.00006430346,0.023947598],"genre_scores_gemma":[0.99696,0.0000043755035,0.00005598891,0.0012508002,0.000225884,0.000006856172,0.00001683506,0.0000079836955,0.0014713112],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991549,0.000027693584,0.0002834489,0.00017206758,0.00017388903,0.00018797489],"domain_scores_gemma":[0.9995544,0.000022115926,0.00005188551,0.00017549985,0.00004858262,0.00014750921],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013636932,0.00011647809,0.00022615916,0.0002692229,0.00006261336,0.0000064714113,0.000042061998,0.000076730044,0.00088136113],"category_scores_gemma":[0.00013792387,0.000086843356,0.00004833887,0.00028737422,0.00008063488,0.00006931762,0.000008398766,0.00024830978,0.000023311935],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013229917,0.0011282658,0.5726128,0.0000690816,0.00015802855,0.12162556,0.003939879,0.000028342734,0.1444745,0.0052760253,0.016697215,0.13385798],"study_design_scores_gemma":[0.0023760782,0.0007825757,0.9517693,0.000095874835,0.000083497565,0.028656248,0.00051846926,0.00019615288,0.0009540595,0.00063502236,0.013774758,0.00015797286],"about_ca_topic_score_codex":0.00022383263,"about_ca_topic_score_gemma":0.0008855387,"teacher_disagreement_score":0.37915647,"about_ca_system_score_codex":0.000057638492,"about_ca_system_score_gemma":0.000054407785,"threshold_uncertainty_score":0.96502864},"labels":[],"label_agreement":null},{"id":"W4280526881","doi":"10.1007/s00134-022-06699-w","title":"Corticosteroids for severe community-acquired pneumonia: a story without an ending","year":2022,"lang":"en","type":"letter","venue":"Intensive Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Pain medicine; Anesthesiology; Pneumonia; Intensive care medicine; Community-acquired pneumonia; Emergency medicine; Medical emergency; Anesthesia; Internal medicine","score_opus":0.05672268094344964,"score_gpt":0.3337233837163936,"score_spread":0.277000702772944,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4280526881","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.07195031,0.0022823235,0.00020664469,0.9078577,0.009301183,0.0039881784,0.0007869821,0.0006611394,0.002965501],"genre_scores_gemma":[0.10311317,0.0000696184,0.000026586327,0.8806092,0.0065769623,0.00075746333,0.0051445626,0.00026622118,0.0034361947],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9961686,0.0008248698,0.0007272537,0.0007001664,0.0008166866,0.0007623837],"domain_scores_gemma":[0.9923936,0.00083845353,0.0004638643,0.0014861065,0.004484975,0.00033298405],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00044324866,0.00076302316,0.0017628748,0.0007606222,0.0011780986,0.00002546828,0.0004477055,0.000810049,0.00058604236],"category_scores_gemma":[0.0027432418,0.0006300752,0.00041424096,0.00032364426,0.00070512,0.0001137122,0.00021749886,0.0055960445,0.000016980011],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034627473,0.000066688524,0.0028586441,0.001882152,0.0006810948,0.0021292898,0.016095031,0.000003414485,0.029987104,0.0000054537413,0.94337404,0.0025707884],"study_design_scores_gemma":[0.003319774,0.0086727245,0.0014245446,0.0013171204,0.0016687452,0.0030238174,0.055783037,0.000017969944,0.00007070712,0.00002153772,0.9241052,0.000574806],"about_ca_topic_score_codex":0.00022169469,"about_ca_topic_score_gemma":0.00007073668,"teacher_disagreement_score":0.039688006,"about_ca_system_score_codex":0.001088391,"about_ca_system_score_gemma":0.0004552703,"threshold_uncertainty_score":0.9996151},"labels":[],"label_agreement":null},{"id":"W4281661162","doi":"10.1111/apa.16447","title":"Under‐five children's acute respiratory infection dropped significantly in Bangladesh: An evidence from Bangladesh demographic and health survey, 1996–2018","year":2022,"lang":"en","type":"review","venue":"Acta Paediatrica","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Medicine; Cross-sectional study; Respiratory infection; Logistic regression; Odds ratio; Pediatrics; Under-five; Demography; Environmental health; Respiratory system; Internal medicine","score_opus":0.09356211963149258,"score_gpt":0.3579478463319645,"score_spread":0.26438572670047195,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4281661162","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.03132857,0.9627062,0.000014653763,0.00030588912,0.0008488463,0.0029743926,0.0014785366,0.00028830805,0.00005456719],"genre_scores_gemma":[0.0153217595,0.98001397,0.000025643936,0.0009934311,0.00088855065,0.00035086027,0.0022006228,0.00017160297,0.00003357774],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99244374,0.0028522275,0.001505814,0.0016064596,0.00073203864,0.00085973553],"domain_scores_gemma":[0.9953468,0.001540025,0.0010750612,0.0011836153,0.000082716935,0.0007717963],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.002137038,0.000918396,0.0027083545,0.0020476258,0.0006459255,0.00011136503,0.00038729917,0.00077960093,0.00025120674],"category_scores_gemma":[0.0003816292,0.0008212678,0.00060899626,0.0035389308,0.00025053995,0.0004321143,0.00027836417,0.002402591,0.000032809086],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012117312,0.0011988258,0.5170208,0.00351773,0.0015573878,0.00025896128,0.00038599333,0.000004032631,0.000044602348,0.000010902501,0.0037537606,0.47212583],"study_design_scores_gemma":[0.0010920003,0.0020349473,0.58969694,0.0020910862,0.0022364736,0.00018976779,0.000029023158,0.000005925817,4.4663597e-7,0.000018808423,0.40167966,0.0009248944],"about_ca_topic_score_codex":0.007968881,"about_ca_topic_score_gemma":0.003673357,"teacher_disagreement_score":0.47120094,"about_ca_system_score_codex":0.00087309733,"about_ca_system_score_gemma":0.002254597,"threshold_uncertainty_score":0.9998989},"labels":[],"label_agreement":null},{"id":"W4282601070","doi":"10.1016/j.rmed.2022.106884","title":"Comparison of the prognostic performance of the CURB-65 and a modified version of the pneumonia severity index designed to identify high-risk patients using the International Community-Acquired Pneumonia Collaboration Cohort","year":2022,"lang":"en","type":"article","venue":"Respiratory Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Dalhousie University","keywords":"Medicine; Pneumonia severity index; Receiver operating characteristic; Pneumonia; Internal medicine; Community-acquired pneumonia; Cohort; Risk of mortality","score_opus":0.033025631796836465,"score_gpt":0.32849773495362905,"score_spread":0.29547210315679256,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4282601070","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957231,0.00008287542,0.000028908597,0.0012815958,0.0010508243,0.0016760025,0.00007539649,0.000013845896,0.000067427616],"genre_scores_gemma":[0.9990837,0.000008788959,0.0000050421286,0.0007329042,0.000061276754,0.000060334816,0.000007124745,0.000018612302,0.000022213608],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99633914,0.0013440333,0.0007444486,0.00019508589,0.0012040585,0.00017323426],"domain_scores_gemma":[0.99730766,0.00033866917,0.00089438533,0.0008337117,0.00055547175,0.00007012783],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014211189,0.00018795044,0.0004416418,0.00013817691,0.0012068091,0.000009907741,0.00065193727,0.00007920005,0.0000240812],"category_scores_gemma":[0.0009340408,0.00009392337,0.000096897624,0.0011265614,0.0006447704,0.00008787163,0.0006293354,0.00059852784,3.930275e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018160052,0.00024982827,0.7595635,0.00007926391,0.00008464168,2.3071136e-7,0.0017190173,0.0022598444,0.23548466,0.000012190406,0.0001518272,0.00021339995],"study_design_scores_gemma":[0.0016004451,0.00082891167,0.9811467,0.00034128834,0.00034746318,0.0000062638014,0.0013210046,0.0039460505,0.009504209,0.00001224762,0.0008599838,0.00008546077],"about_ca_topic_score_codex":0.00041007565,"about_ca_topic_score_gemma":0.000098596116,"teacher_disagreement_score":0.22598046,"about_ca_system_score_codex":0.00023153263,"about_ca_system_score_gemma":0.000337453,"threshold_uncertainty_score":0.9281922},"labels":[],"label_agreement":null},{"id":"W4283208786","doi":"10.1016/j.vaccine.2022.06.042","title":"Opsonophagocytic activity against Streptococcus pneumoniae in Indigenous and non-Indigenous patients with severe chronic kidney disease immunized with 13-valent pneumococcal conjugate vaccine","year":2022,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"NOSM University","funders":"","keywords":"Serotype; Immunogenicity; Streptococcus pneumoniae; Pneumococcal conjugate vaccine; Immunization; Titer; Pneumococcal polysaccharide vaccine; Immunology; Medicine; Antibody titer; Antibody; Pneumococcal vaccine; Virology; Biology; Microbiology; Pneumococcal disease; Antibiotics","score_opus":0.004559403498332144,"score_gpt":0.2197475719635661,"score_spread":0.21518816846523395,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4283208786","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99443895,0.0002663785,0.000012037597,0.0006674872,0.00016271441,0.003904311,0.0002936047,0.0001547932,0.00009973688],"genre_scores_gemma":[0.9977126,0.00014244775,0.000008486659,0.0006582186,0.00010278936,0.000778122,0.00028775944,0.000116844334,0.0001927141],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9969791,0.00020338704,0.00051741954,0.00083010213,0.00056908245,0.0009008624],"domain_scores_gemma":[0.99769694,0.000075187614,0.0003110643,0.0008580756,0.00015744848,0.0009013148],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00022959762,0.0006005017,0.00088960334,0.0005221209,0.0008319692,0.00005149671,0.00023770408,0.00010392204,0.00015542831],"category_scores_gemma":[0.000043832417,0.00046097787,0.00011145479,0.00090764003,0.000036894722,0.0002442686,0.0002812516,0.0010363122,0.000017483217],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0030282263,0.0022528195,0.96995115,0.0003447317,0.00030238787,0.0008371273,0.0011974261,0.0015559457,0.017085085,7.332911e-7,0.00003680257,0.0034075368],"study_design_scores_gemma":[0.024771199,0.0050006215,0.96623003,0.00024880024,0.000325984,0.00010853445,0.000102783044,0.00031205468,0.00037573185,0.0000040471155,0.0019250589,0.0005951258],"about_ca_topic_score_codex":0.00024011562,"about_ca_topic_score_gemma":0.0003621369,"teacher_disagreement_score":0.021742972,"about_ca_system_score_codex":0.0011643997,"about_ca_system_score_gemma":0.0017614556,"threshold_uncertainty_score":0.9997842},"labels":[],"label_agreement":null},{"id":"W4283377211","doi":"10.1136/bmjopen-2022-062428","title":"Shorter versus longer durations of antibiotic treatment for patients with community-acquired pneumonia: a protocol for a systematic review and meta-analysis","year":2022,"lang":"en","type":"review","venue":"BMJ Open","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; McMaster University; Impact","funders":"","keywords":"Medicine; Meta-analysis; MEDLINE; Community-acquired pneumonia; Protocol (science); Intensive care medicine; CINAHL; Pneumonia; Internal medicine; Psychological intervention; Alternative medicine; Psychiatry; Pathology","score_opus":0.40926839974541784,"score_gpt":0.5198845550723369,"score_spread":0.11061615532691904,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4283377211","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[7.84306e-7,0.13860258,0.000029094675,0.00009386219,0.000015031091,0.86014473,0.0009599496,0.000014605706,0.00013934905],"genre_scores_gemma":[0.0000037902507,0.060306273,0.0001592136,0.00012955375,0.000009216398,0.9379787,0.0007826463,0.000053102645,0.00057751517],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9971403,0.0008384445,0.0012631115,0.00032955618,0.00024219904,0.00018641986],"domain_scores_gemma":[0.9964789,0.00079083006,0.001184415,0.0012159313,0.000226946,0.0001029878],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008350586,0.00044285023,0.0077200476,0.00026144276,0.0003746752,0.00005714971,0.00028248844,0.000102094935,0.00015679168],"category_scores_gemma":[0.000223547,0.0002303701,0.0019512087,0.00062047044,0.000058057623,0.0000889027,0.00015475083,0.000120397905,0.0000020008986],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012411804,0.00089267374,0.000014757752,0.842737,0.15557452,0.00000204134,0.000057867135,3.641874e-7,8.476602e-8,0.000008136461,0.00006412475,0.00052428315],"study_design_scores_gemma":[0.0024014201,0.0038954492,0.00001032237,0.039996903,0.8453933,0.000017301865,0.000032751173,0.0000028694844,1.3965052e-7,7.247236e-7,0.108012326,0.00023651133],"about_ca_topic_score_codex":0.000030255569,"about_ca_topic_score_gemma":0.00011828949,"teacher_disagreement_score":0.80274016,"about_ca_system_score_codex":0.00017901667,"about_ca_system_score_gemma":0.0004367035,"threshold_uncertainty_score":0.939422},"labels":[],"label_agreement":null},{"id":"W4283462147","doi":"10.1016/j.ijantimicag.2022.106629","title":"Immunogenicity of the 13-valent pneumococcal conjugate vaccine followed by the 23-valent pneumococcal polysaccharide vaccine in people living with HIV on combination antiretroviral therapy","year":2022,"lang":"en","type":"article","venue":"International Journal of Antimicrobial Agents","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"ZonMw; Amsterdam University Medical Centers","keywords":"Medicine; Pneumococcal polysaccharide vaccine; Pneumococcal conjugate vaccine; Vaccination; Pneumococcal vaccine; Immunogenicity; Vaccination schedule; Immunology; Internal medicine; Population; Streptococcus pneumoniae; Immunization; Antibody; Pneumococcal disease; Antibiotics","score_opus":0.00974072115433985,"score_gpt":0.25354896393677845,"score_spread":0.2438082427824386,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4283462147","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98907566,0.000057451358,0.000030270565,0.008662787,0.0014864536,0.00050588435,0.00008248593,0.000012252415,0.00008677801],"genre_scores_gemma":[0.9976434,0.00018356468,0.0000054553375,0.0017093954,0.00015827228,0.000013209612,0.000016172078,0.000030524716,0.00023997578],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99733996,0.00033358292,0.0008915659,0.00022615214,0.0009466024,0.00026213308],"domain_scores_gemma":[0.9982755,0.00015096339,0.00086669944,0.00025779946,0.0003732492,0.000075773125],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00064191496,0.00024309929,0.00044044945,0.00031590977,0.00027401026,0.00004396376,0.0006993429,0.00006166278,0.00016835671],"category_scores_gemma":[0.000091391,0.00014459676,0.00039725757,0.00040112968,0.00005458704,0.00015749494,0.00021908707,0.00083089306,0.0000053487515],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012280759,0.0015561556,0.44972253,0.000010291321,0.00036728784,0.000046411347,0.00040137095,0.0008415247,0.54360664,0.000021195863,0.0019714516,0.00022703786],"study_design_scores_gemma":[0.007740943,0.0017000473,0.9485539,0.00033394992,0.00010912853,0.0010194941,0.000162477,0.00021752593,0.03856232,0.000009100453,0.0014196159,0.00017145919],"about_ca_topic_score_codex":0.00012953574,"about_ca_topic_score_gemma":0.000041247527,"teacher_disagreement_score":0.50504434,"about_ca_system_score_codex":0.0004091875,"about_ca_system_score_gemma":0.00024667874,"threshold_uncertainty_score":0.5896485},"labels":[],"label_agreement":null},{"id":"W4283587489","doi":"10.14740/ijcp483","title":"<i>Moraxella osloensis</i> Bacteremia and Pneumonia in a Seventeen-Year-Old Patient","year":2022,"lang":"en","type":"article","venue":"International Journal of Clinical Pediatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Moraxella catarrhalis; Medicine; Bacteremia; Pneumonia; Moraxella; Antibiotics; Blood culture; Intensive care medicine; Internal medicine; Microbiology; Streptococcus pneumoniae; Bacteria; Biology","score_opus":0.02728196551625583,"score_gpt":0.3571824558280734,"score_spread":0.32990049031181756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4283587489","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9908097,0.00019135502,0.000017592989,0.005392491,0.0028089879,0.00009911714,0.000023974317,0.000008598302,0.00064820313],"genre_scores_gemma":[0.9942965,0.00085207954,0.00013373872,0.0033651574,0.0011541297,0.0000036371653,0.000004405978,0.000013849327,0.00017651592],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9974643,0.00018233951,0.0012931856,0.00016017743,0.00076002936,0.00013995383],"domain_scores_gemma":[0.99823046,0.00047898278,0.0006135127,0.00010723079,0.00036603218,0.00020379544],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009595556,0.00010336496,0.00036389564,0.00037186014,0.000052273197,0.0000227575,0.00016823056,0.00007631659,0.00013766243],"category_scores_gemma":[0.00089925237,0.00008965211,0.00024848082,0.00022319192,0.000050769646,0.00009070344,0.00017194403,0.0010448184,0.000007809225],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038581708,0.0006910099,0.9874536,0.000010361601,0.000072443436,0.000918278,0.00010632767,0.00012974485,0.0003422992,0.00007418369,0.0027162386,0.007099733],"study_design_scores_gemma":[0.004672676,0.0019125598,0.81379676,0.000047774254,0.00014375667,0.0023865586,0.00029393754,0.00010279546,0.000024705765,0.00046827976,0.1759826,0.00016757852],"about_ca_topic_score_codex":0.000008035495,"about_ca_topic_score_gemma":0.0000061432306,"teacher_disagreement_score":0.17365678,"about_ca_system_score_codex":0.00012684369,"about_ca_system_score_gemma":0.00030646464,"threshold_uncertainty_score":0.45392746},"labels":[],"label_agreement":null},{"id":"W4283734370","doi":"10.1136/bmjresp-2022-001218","title":"Estimating population-based incidence of community-acquired pneumonia and acute otitis media in children and adults in Ontario and British Columbia using health administrative data, 2005–2018: a Canadian Immunisation Research Network (CIRN) study","year":2022,"lang":"en","type":"article","venue":"BMJ Open Respiratory Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Centre for Disease Control; Alberta Health Services; Sinai Health System; Université de Montréal; Hospital for Sick Children; Public Health Ontario; University of British Columbia; University of Calgary; Institute for Clinical Evaluative Sciences; University Health Network; BC Children's Hospital; University of Toronto","funders":"Department of Family and Community Medicine, University of Toronto; Canadian Immunization Research Network; BC Children's Hospital; Michael Smith Health Research BC; University of Toronto; Canadian Child Health Clinician Scientist Program; Children's Hospital Foundation","keywords":"Medicine; Incidence (geometry); Community-acquired pneumonia; Pneumonia; Population; Acute otitis media; Pneumococcal pneumonia; Pediatrics; Otitis; Streptococcus pneumoniae; Rate ratio; Demography; Internal medicine; Surgery; Environmental health","score_opus":0.28637047785558234,"score_gpt":0.4834497419853451,"score_spread":0.1970792641297628,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4283734370","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99224377,0.00023597009,0.0000012255897,0.00041921192,0.00005074706,0.0067329616,0.00024417773,0.000008735743,0.00006320306],"genre_scores_gemma":[0.9985784,0.000017404076,0.000294066,0.00029025922,0.00003750117,0.0004677913,0.00025337067,0.000030845502,0.000030342408],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9901609,0.006567203,0.0008508022,0.00056239334,0.0010018112,0.00085690676],"domain_scores_gemma":[0.9972564,0.0008887016,0.00020346466,0.0008855574,0.00027960786,0.00048625455],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.019884616,0.00014931682,0.0005933668,0.0006934224,0.0028571333,0.0004525295,0.0005920892,0.00010133776,0.00011438205],"category_scores_gemma":[0.0010089338,0.0002143837,0.0000150793885,0.0013012247,0.0004509781,0.0004278237,0.0017143253,0.0019649589,5.3614116e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019085823,0.0003519739,0.99132204,0.00006041795,0.000043175092,0.00016041931,0.0036254972,0.00020978208,0.000113721886,0.000002888812,0.00024655688,0.0036726957],"study_design_scores_gemma":[0.0028008714,0.0018803502,0.9864697,0.00060224463,0.000014274218,0.0001525144,0.005182949,0.0025295855,8.702253e-7,0.00006398043,0.00013536187,0.00016730925],"about_ca_topic_score_codex":0.9929103,"about_ca_topic_score_gemma":0.99933726,"teacher_disagreement_score":0.018875683,"about_ca_system_score_codex":0.0016208088,"about_ca_system_score_gemma":0.008403662,"threshold_uncertainty_score":0.99844104},"labels":[],"label_agreement":null},{"id":"W4283761640","doi":"10.1016/j.vaccine.2022.06.056","title":"Understanding predictors of pneumococcal vaccine uptake in older adults aged 65 years and older in high-income countries across the globe: A scoping review","year":2022,"lang":"en","type":"review","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Waterloo; Public Health Ontario; University of Toronto","funders":"Connaught Fund","keywords":"Globe; Medicine; Pneumococcal infections; Gerontology; Pneumococcal disease; Streptococcus pneumoniae; Environmental health; Demography; Biology; Sociology","score_opus":0.044870694965540456,"score_gpt":0.3407854905135685,"score_spread":0.295914795548028,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4283761640","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.03175413,0.96238977,0.0000045864676,0.00048833975,0.00047826677,0.0046998262,0.000099644894,0.000055513334,0.000029904106],"genre_scores_gemma":[0.009499244,0.98936045,0.000003620715,0.00027364003,0.00019731994,0.00046033127,0.00007644263,0.000080501915,0.000048417987],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.9963214,0.0003855908,0.0016835395,0.0006239079,0.00043742076,0.0005481857],"domain_scores_gemma":[0.9979807,0.00055019755,0.00062089844,0.00066208333,0.000044266737,0.00014183031],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0011349964,0.0005347157,0.0028632828,0.00045100076,0.00017564597,0.00003035032,0.00027068277,0.0002914042,0.0004416962],"category_scores_gemma":[0.00032326594,0.00036605523,0.0003172674,0.0016398444,0.000040865736,0.00011223847,0.00028641775,0.0011679442,0.000006268342],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002606108,0.0007386737,0.11045315,0.8081275,0.0008977263,0.0010472152,0.002351364,0.000011202662,0.00001445459,0.00014516589,0.0010934173,0.07485951],"study_design_scores_gemma":[0.004652899,0.00028453235,0.1686709,0.6691991,0.0009976167,0.00038230876,0.00024852672,0.0000034819388,6.017127e-7,0.0000072502557,0.15509541,0.00045733692],"about_ca_topic_score_codex":0.00010029194,"about_ca_topic_score_gemma":0.0008298211,"teacher_disagreement_score":0.154002,"about_ca_system_score_codex":0.0005762875,"about_ca_system_score_gemma":0.0004511978,"threshold_uncertainty_score":0.9998791},"labels":[],"label_agreement":null},{"id":"W4283812970","doi":"10.1093/cid/ciac475","title":"Distribution of Serotypes Causing Invasive Pneumococcal Disease in Children From High-Income Countries and the Impact of Pediatric Pneumococcal Vaccination","year":2022,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":81,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"","keywords":"Serotype; Pneumococcal disease; Medicine; Pediatrics; Incidence (geometry); Vaccination; Pneumococcal conjugate vaccine; Streptococcus pneumoniae; Virology; Antibiotics; Microbiology","score_opus":0.01228469221085039,"score_gpt":0.3178802134604719,"score_spread":0.3055955212496215,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4283812970","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965981,0.00063454465,0.000020214995,0.00029635226,0.00019703101,0.0008880497,0.0013069042,0.000048736583,0.000010021589],"genre_scores_gemma":[0.99861836,0.0005707636,3.492993e-7,0.00007111523,0.0002901775,0.0001126301,0.0003153944,0.000017308936,0.000003888762],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.997812,0.0005884217,0.00080792606,0.00031842839,0.00027376416,0.00019949736],"domain_scores_gemma":[0.9974193,0.0014628835,0.00041861823,0.00030106434,0.00016150027,0.00023660873],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038595885,0.00019069084,0.0006246235,0.00016187536,0.00024548147,0.000019267794,0.00008197292,0.00007918689,0.00014133379],"category_scores_gemma":[0.0014307268,0.00013465899,0.00038410974,0.0004909784,0.00032609116,0.00012078025,0.00017731449,0.00038520823,0.0000023117036],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00050663156,0.0009006124,0.99655956,0.000062081686,0.00019962285,0.000013782212,0.00004046522,0.0013121895,0.000099591234,0.00016301448,0.000022579889,0.000119842225],"study_design_scores_gemma":[0.0046104495,0.0006602063,0.9921932,0.0000344811,0.00073913566,0.000008152764,0.0000196492,0.00024381118,0.00001493293,0.001341779,0.000006296112,0.00012788775],"about_ca_topic_score_codex":0.0008514589,"about_ca_topic_score_gemma":0.000041979813,"teacher_disagreement_score":0.0043663685,"about_ca_system_score_codex":0.0001815221,"about_ca_system_score_gemma":0.0005510513,"threshold_uncertainty_score":0.5491234},"labels":[],"label_agreement":null},{"id":"W4283836075","doi":"10.1136/bmjdrc-2022-002880","title":"In-hospital hyperglycemia but not diabetes mellitus alone is associated with increased in-hospital mortality in community-acquired pneumonia (CAP): a systematic review and meta-analysis of observational studies prior to COVID-19","year":2022,"lang":"en","type":"review","venue":"BMJ Open Diabetes Research & Care","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Australian Government","keywords":"Medicine; CINAHL; Diabetes mellitus; Observational study; Meta-analysis; MEDLINE; Pneumonia; Intensive care medicine; Emergency medicine; Cohort study; Internal medicine; Psychological intervention","score_opus":0.3388189189749601,"score_gpt":0.5038522166302299,"score_spread":0.16503329765526986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4283836075","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.20734794,0.7659176,3.0020335e-8,0.0015104219,0.000031722346,0.022898527,0.0022386205,0.000021437985,0.00003370208],"genre_scores_gemma":[0.06572501,0.8899544,0.000024815132,0.002825438,0.000018963658,0.039535083,0.0016707219,0.00012590243,0.000119670076],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.982246,0.010413081,0.0030188393,0.0010984367,0.002184302,0.0010393753],"domain_scores_gemma":[0.9875617,0.0074315676,0.001180019,0.0020112474,0.0012182231,0.00059725094],"candidate_categories":["metaresearch","metaepi_narrow","metaepi_broad"],"consensus_categories":[],"category_scores_codex":[0.012098024,0.0008710319,0.015260195,0.0021350703,0.0004845391,0.00015266602,0.0013820454,0.00034762535,0.0002823235],"category_scores_gemma":[0.021361278,0.0006314667,0.0012855217,0.008907529,0.000517561,0.0003572947,0.0020852746,0.0018472875,0.000007636321],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000032285217,0.0016503143,0.0563224,0.8151861,0.12289793,0.00030300554,0.0031104572,0.00001583204,0.000014601214,0.000011942937,0.00024220017,0.00021296718],"study_design_scores_gemma":[0.0038545965,0.005794921,0.06892793,0.20346564,0.6904687,0.000009801899,0.010219974,0.000037465714,0.000018999284,0.000034437227,0.014591942,0.00257555],"about_ca_topic_score_codex":0.002463044,"about_ca_topic_score_gemma":0.0051233904,"teacher_disagreement_score":0.61172044,"about_ca_system_score_codex":0.002694673,"about_ca_system_score_gemma":0.0027622317,"threshold_uncertainty_score":0.99961364},"labels":[],"label_agreement":null},{"id":"W4285494400","doi":"10.1111/imm.13546","title":"Pneumolysin suppresses the initial macrophage pro‐inflammatory response to <i>Streptococcus pneumoniae</i>","year":2022,"lang":"en","type":"article","venue":"Immunology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Rosetrees Trust; University College London Hospitals NHS Foundation Trust; National Institute for Health and Care Research; Medical Research Council Canada; Wellcome Trust","keywords":"Pneumolysin; Streptococcus pneumoniae; Microbiology; Macrophage; Inflammatory response; Immunology; Biology; Medicine; Inflammation; Antibiotics; In vitro; Genetics","score_opus":0.016771048510751452,"score_gpt":0.295930693930159,"score_spread":0.2791596454194075,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4285494400","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9783111,0.00031966457,0.000013518918,0.017099794,0.0011748245,0.0010605374,0.00005803203,0.00021121095,0.0017513199],"genre_scores_gemma":[0.99201965,0.000012954044,0.000007024305,0.004305528,0.00019648043,0.0012212058,0.00001309602,0.000044765962,0.0021793],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976173,0.00082873134,0.00038648953,0.00038179953,0.0002877015,0.0004979775],"domain_scores_gemma":[0.9985278,0.0003322852,0.00010743299,0.0008217138,0.00009287479,0.00011785447],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00053953344,0.000223782,0.00031993966,0.00026142233,0.00089122745,0.000027545539,0.0003613067,0.00010820543,0.0010236999],"category_scores_gemma":[0.00029713073,0.00017069858,0.00016812784,0.0005088301,0.0002679014,0.000057918503,0.0004697039,0.00086969853,0.0003698435],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001139446,0.00023080687,0.0058615007,0.000012730169,0.00015319056,0.00070365245,0.00089264964,0.00009685294,0.9862202,0.00011985811,0.002254948,0.0023141974],"study_design_scores_gemma":[0.0014273119,0.0019825536,0.106383145,0.000015347254,0.00008207649,0.0017984475,0.00086521334,0.000009885537,0.049076192,0.00006392032,0.8380407,0.0002551925],"about_ca_topic_score_codex":0.000018589015,"about_ca_topic_score_gemma":0.000009402124,"teacher_disagreement_score":0.937144,"about_ca_system_score_codex":0.00018735822,"about_ca_system_score_gemma":0.00040828792,"threshold_uncertainty_score":0.9998895},"labels":[],"label_agreement":null},{"id":"W4285745662","doi":"10.15167/2421-4248/jpmh2021.62.4.1805","title":"Pneumococcal infections and homelessness","year":2020,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Carriage; Streptococcus pneumoniae; Medicine; Vaccination; Outbreak; Pneumococcal vaccination; Pneumococcal infections; Pediatrics; Demography; Immunology; Virology; Biology; Microbiology","score_opus":0.030187980321214947,"score_gpt":0.2350393990610257,"score_spread":0.20485141873981075,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4285745662","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98117006,0.000058006444,0.00009925603,0.009931734,0.00013164597,0.00042357238,0.0000034555082,0.0001348625,0.0080474075],"genre_scores_gemma":[0.99732065,0.000030202384,0.000003510016,0.0017500926,0.00023551159,0.0004942385,0.0000019999572,0.00000974254,0.00015405622],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995141,0.000015609874,0.0000952786,0.0001418699,0.000068829315,0.00016430368],"domain_scores_gemma":[0.9995404,0.00002257998,0.000018689536,0.000076584234,0.000027949816,0.00031380606],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000043057924,0.00006835015,0.00013846545,0.00004577628,0.00008359537,0.000016706146,0.000020133328,0.00004914742,0.000023396493],"category_scores_gemma":[0.000100179655,0.000056695917,0.000040600742,0.00020036595,0.000053354204,0.000053260756,0.000024844108,0.0001374834,0.000028642204],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003528496,0.00026214652,0.85111916,0.00016297674,0.00012179499,0.000066705914,0.00045079156,0.000007883017,0.012616803,0.0006994719,0.00064052764,0.13381647],"study_design_scores_gemma":[0.0004742198,0.00005625069,0.92228025,0.000002651322,0.00004556918,0.000063750354,0.00004348365,0.000024302926,0.0003870129,0.00002292756,0.07653542,0.000064138854],"about_ca_topic_score_codex":0.0000034534746,"about_ca_topic_score_gemma":0.000004219749,"teacher_disagreement_score":0.13375233,"about_ca_system_score_codex":0.000014488295,"about_ca_system_score_gemma":0.000019141777,"threshold_uncertainty_score":0.23119925},"labels":[],"label_agreement":null},{"id":"W4285804622","doi":"10.3389/fped.2022.945767","title":"Investigation of Concurrent Pneumococcal Meningitis in Two Children Attending the Same Day-Care Center","year":2022,"lang":"en","type":"article","venue":"Frontiers in Pediatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine","funders":"National Research Council of the Philippines","keywords":"Streptococcus pneumoniae; Serotype; Medicine; Meningitis; Carriage; Pneumococcal conjugate vaccine; Pediatrics; Pneumococcal infections; Neisseria meningitidis; Pneumococcal vaccine; Immunology; Microbiology; Antibiotics; Biology","score_opus":0.012573386232407833,"score_gpt":0.2628029890449043,"score_spread":0.25022960281249645,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4285804622","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99579775,0.0009380357,0.00018929708,0.0005592923,0.0017396405,0.0004587017,0.00007708209,0.000021806773,0.00021838432],"genre_scores_gemma":[0.9991561,0.00011440487,0.00010084718,0.0001817594,0.00022999766,0.00006994652,0.00010301759,0.00001542792,0.000028460076],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99878705,0.00017751109,0.00033914074,0.00019518744,0.0002867716,0.00021432346],"domain_scores_gemma":[0.9995537,0.000049094022,0.00012677613,0.00017266844,0.000034758436,0.000063005],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002908507,0.00010995174,0.00022276858,0.00042588823,0.00012848616,0.000008249163,0.00012787968,0.000036532525,0.000025234669],"category_scores_gemma":[0.00007360497,0.00009337093,0.00007899526,0.0007699167,0.00007816458,0.00005574353,0.000108230444,0.00051468547,0.0000014370863],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000069555854,0.000038846734,0.9927064,0.000027480412,0.000011332476,0.000011390098,0.0026059682,0.0003373805,0.0004915804,0.000027900287,0.0022312852,0.0015034396],"study_design_scores_gemma":[0.0019170803,0.0001341643,0.99151754,0.000024620644,0.00007552633,0.00003620351,0.0027259435,0.0003166742,0.0001345443,0.00009461442,0.00288986,0.0001332064],"about_ca_topic_score_codex":0.000049332317,"about_ca_topic_score_gemma":0.000026669286,"teacher_disagreement_score":0.0033583792,"about_ca_system_score_codex":0.00031503715,"about_ca_system_score_gemma":0.00012741155,"threshold_uncertainty_score":0.3807556},"labels":[],"label_agreement":null},{"id":"W4289536056","doi":"10.2139/ssrn.4172277","title":"Shorter Versus Longer Duration of Antibiotic Treatment for Community-Acquired Pneumonia in Children: A Systematic Review and Meta-Analysis","year":2022,"lang":"en","type":"review","venue":"SSRN Electronic Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Impact; McMaster University","funders":"","keywords":"Meta-analysis; Community-acquired pneumonia; Medicine; Duration (music); Pneumonia; Antibiotics; Intensive care medicine; Pediatrics; Internal medicine; Microbiology; Biology; Physics","score_opus":0.0951445193866702,"score_gpt":0.36971661899453667,"score_spread":0.27457209960786644,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4289536056","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00019306153,0.9955871,0.00004425622,0.00013002164,0.000040766558,0.0039081736,0.000062061685,0.000012355934,0.000022206557],"genre_scores_gemma":[0.0026739452,0.99635816,0.000006307295,0.000071361734,0.000030131523,0.0003851801,0.00017390073,0.00004504199,0.00025599374],"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9956494,0.0014264146,0.0015787535,0.0002593243,0.0002639232,0.00082217355],"domain_scores_gemma":[0.99774945,0.00036499387,0.0011495389,0.0005688461,0.00007588586,0.00009128607],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0026756858,0.0004577448,0.006707097,0.0007788006,0.0002789704,0.000024728735,0.00018175525,0.00015458529,0.00007302196],"category_scores_gemma":[0.00016673641,0.00028532083,0.0031977487,0.00091711764,0.00005104173,0.00007147906,0.000037147463,0.0013255856,0.0000020853665],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040506326,0.0007787359,0.00007730173,0.37259415,0.61821437,0.00000867215,0.00011086791,0.0000029060607,0.000004143513,0.00026890583,0.000004255944,0.007895157],"study_design_scores_gemma":[0.0008137212,0.002011612,0.000019447623,0.0062359157,0.9859877,0.0016349589,0.00012964402,0.0000030843635,2.9602904e-7,0.00003664588,0.0028962346,0.00023071573],"about_ca_topic_score_codex":0.000044067154,"about_ca_topic_score_gemma":0.0004666996,"teacher_disagreement_score":0.36777332,"about_ca_system_score_codex":0.0016272794,"about_ca_system_score_gemma":0.0016015106,"threshold_uncertainty_score":0.9999599},"labels":[],"label_agreement":null},{"id":"W4290694536","doi":"10.1016/j.lana.2022.100341","title":"Invasive pneumococcal disease and long-term outcomes in children: A 20-year population cohort study","year":2022,"lang":"en","type":"article","venue":"The Lancet Regional Health - Americas","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Sciences Centre; Provincial Laboratory of Public Health; Dalhousie University; University of Alberta","funders":"","keywords":"Medicine; Hazard ratio; Streptococcus pneumoniae; Population; Pediatrics; Cohort; Proportional hazards model; Pneumococcal infections; Vaccination; Cohort study; Disease; Demography; Internal medicine; Immunology; Environmental health; Confidence interval","score_opus":0.05463036926992869,"score_gpt":0.36868116490586694,"score_spread":0.31405079563593824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4290694536","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96919256,0.00018734956,0.000002167231,0.028730279,0.00007520434,0.0016976242,0.000031947882,0.00004838225,0.000034462097],"genre_scores_gemma":[0.99043703,0.00017675618,0.000004749106,0.008602829,0.00019702301,0.00034788102,0.000092775284,0.000016213182,0.0001247412],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984688,0.00034708422,0.00026950473,0.00027776058,0.00035117075,0.00028567557],"domain_scores_gemma":[0.99919206,0.0001138836,0.00014481758,0.0003279945,0.00001950316,0.00020174381],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036586804,0.00013267393,0.000460341,0.000116223666,0.0004148642,0.000010718911,0.000096983946,0.000016079544,0.000042005428],"category_scores_gemma":[0.00004411902,0.00009267091,0.000058947713,0.00029850108,0.000104443534,0.00004036284,0.00009808336,0.0003987175,0.000008053824],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015807399,0.0005180656,0.99807423,0.000026173422,0.00006815969,0.00003487012,0.00030902118,0.000052180025,0.000013966304,0.000055438908,0.0003308802,0.0003589595],"study_design_scores_gemma":[0.0013000995,0.00060268224,0.9972604,0.00002166279,0.000047822534,0.00013436317,0.00021141187,0.00001630447,8.727243e-8,0.00005422221,0.00026026112,0.00009068028],"about_ca_topic_score_codex":0.0005099299,"about_ca_topic_score_gemma":0.00018395089,"teacher_disagreement_score":0.021244448,"about_ca_system_score_codex":0.000202124,"about_ca_system_score_gemma":0.00021871389,"threshold_uncertainty_score":0.37790102},"labels":[],"label_agreement":null},{"id":"W4292314731","doi":"10.1097/qad.0000000000003365","title":"Risk factors for pneumococcal carriage in adults living with HIV on antiretroviral therapy in the infant pneumococcal vaccine era in Malawi","year":2022,"lang":"en","type":"article","venue":"AIDS","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Department for International Development; Medical Research Council; Royal Society; Government of the United Kingdom; Department of Health and Social Care; European and Developing Countries Clinical Trials Partnership; Wellcome Trust; National Institute for Health and Care Research; European Commission; Bill and Melinda Gates Foundation","keywords":"Carriage; Medicine; Vaccination; Pneumococcal conjugate vaccine; Pediatrics; Serotype; Pneumococcal vaccine; Socioeconomic status; Conjugate vaccine; Population; Streptococcus pneumoniae; Environmental health; Immunization; Immunology; Biology","score_opus":0.011598304227677648,"score_gpt":0.2600682514608743,"score_spread":0.24846994723319665,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4292314731","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973329,0.000043227672,0.000009369601,0.0006027126,0.00017157855,0.0014129978,0.000055434215,0.00004085289,0.00033096236],"genre_scores_gemma":[0.9985565,0.000047286638,0.000012772433,0.00055831106,0.00010923797,0.00059625244,0.00002603139,0.000038966184,0.00005465264],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99804074,0.00038317585,0.00040665257,0.0004013815,0.00031189798,0.00045617565],"domain_scores_gemma":[0.9987802,0.0006405765,0.00010578344,0.0003736471,0.000026805737,0.00007300802],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00070231466,0.0002563137,0.00042070996,0.00052033615,0.0002046128,0.000022139968,0.00020013636,0.00008920486,0.00008034099],"category_scores_gemma":[0.0001827791,0.0001608935,0.0001232585,0.0008685646,0.000038340146,0.00010024742,0.000053814718,0.0010763935,0.0000036966944],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00053642114,0.00066393893,0.9857564,0.000025631853,0.000025445292,0.0000888161,0.0035277456,0.00063028064,0.0073611774,0.00009816131,0.000023291643,0.001262697],"study_design_scores_gemma":[0.00440137,0.008075461,0.9823341,0.00015949612,0.000019318357,0.000035196943,0.0028427606,0.0004949985,0.0002266262,0.00002173898,0.0011866455,0.00020228149],"about_ca_topic_score_codex":0.000727239,"about_ca_topic_score_gemma":0.00059969345,"teacher_disagreement_score":0.007411522,"about_ca_system_score_codex":0.00020395826,"about_ca_system_score_gemma":0.0001254811,"threshold_uncertainty_score":0.6561046},"labels":[],"label_agreement":null},{"id":"W4293698152","doi":"10.5539/gjhs.v14n9p49","title":"Prevalence and Clinical Predictors of Severe Pneumonia among School-Aged Children: A Systematized Review","year":2022,"lang":"en","type":"review","venue":"Global Journal of Health Science","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Worry; Inclusion and exclusion criteria; Pneumonia; Medicine; Inclusion (mineral); Disease; Environmental health; Intensive care medicine; Pediatrics; Alternative medicine; Psychiatry; Psychology; Pathology; Internal medicine","score_opus":0.05133766943920591,"score_gpt":0.4176191581518435,"score_spread":0.36628148871263755,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4293698152","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.010277773,0.9860917,0.000003859821,0.00020651442,0.0011463057,0.0020466316,0.00008120319,0.000018913446,0.00012714765],"genre_scores_gemma":[0.0014781313,0.99776846,0.00006755574,0.00045053067,0.00018135375,0.000017413171,0.0000025783468,0.000014207112,0.000019770168],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9921882,0.0010190223,0.0042038467,0.0004889447,0.0016205988,0.00047939614],"domain_scores_gemma":[0.992287,0.00021074404,0.005563145,0.00055922393,0.00033982078,0.0010401017],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.010269347,0.00035726285,0.00391807,0.00031610823,0.0004204544,0.000033860702,0.0007487504,0.00015516445,0.00007990838],"category_scores_gemma":[0.0022000195,0.00023436839,0.00083223946,0.0018252496,0.0009064359,0.00027398625,0.00024883868,0.0013403256,0.000005377961],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013037922,0.00024081056,0.6417123,0.26355794,0.00028641243,0.00005832225,0.000009531411,6.3515694e-7,4.77442e-7,0.0000074118184,0.0012308761,0.09288227],"study_design_scores_gemma":[0.0006459098,0.0015525976,0.5975464,0.30114648,0.0021725572,0.02157134,0.000011604554,9.0086405e-7,1.730635e-8,0.0000040286736,0.07513455,0.00021361357],"about_ca_topic_score_codex":0.00001794147,"about_ca_topic_score_gemma":0.0000015046589,"teacher_disagreement_score":0.09266865,"about_ca_system_score_codex":0.0007706609,"about_ca_system_score_gemma":0.010277193,"threshold_uncertainty_score":0.9953336},"labels":[],"label_agreement":null},{"id":"W4294713617","doi":"10.1016/j.vaccine.2022.08.053","title":"A detailed analysis of possible efficacy signals of NTHi-Mcat vaccine against severe COPD exacerbations in a previously reported randomised phase 2b trial","year":2022,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"GlaxoSmithKline","keywords":"Medicine; COPD; Internal medicine; Haemophilus influenzae; Exacerbation; Moraxella catarrhalis; Placebo; Chronic bronchitis; Immunology; Antibiotics; Pathology","score_opus":0.02682154992518962,"score_gpt":0.32216746402116314,"score_spread":0.29534591409597355,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4294713617","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99545795,0.00036112854,0.00008914548,0.00058631995,0.00014712638,0.002731123,0.00007738613,0.00006643141,0.0004834164],"genre_scores_gemma":[0.99828666,0.00009328829,0.000046173816,0.00022640266,0.00006870284,0.00036512903,0.00026899873,0.000028966231,0.00061565934],"study_design_codex":"bench_or_experimental","study_design_gemma":"randomized_trial","domain_scores_codex":[0.99676615,0.00038921775,0.0016988262,0.00040585248,0.00044106515,0.0002988908],"domain_scores_gemma":[0.9975595,0.00046006578,0.00083694025,0.0007035722,0.00027057246,0.00016937811],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0011071039,0.00023931691,0.0015086281,0.0016037499,0.00015657271,0.000008599487,0.000152853,0.00009689938,0.0020217127],"category_scores_gemma":[0.00095980807,0.00020572047,0.00062533293,0.004529781,0.000012904056,0.00007425226,0.00008369391,0.00035181805,0.0000031660388],"study_design_candidate":"randomized_trial","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.20314428,0.013856871,0.16686015,0.0002864789,0.008450415,0.00032163176,0.0019362471,0.020226594,0.58026487,0.000023481602,0.0020989936,0.0025299743],"study_design_scores_gemma":[0.8685581,0.004250562,0.09915002,0.00015354596,0.009648166,0.00007681509,0.0003894266,0.009128045,0.0061358046,0.000016772787,0.0020957259,0.0003970071],"about_ca_topic_score_codex":0.00006027831,"about_ca_topic_score_gemma":0.0001969674,"teacher_disagreement_score":0.66541386,"about_ca_system_score_codex":0.00015235231,"about_ca_system_score_gemma":0.00044188357,"threshold_uncertainty_score":0.9988906},"labels":[],"label_agreement":null},{"id":"W4296778053","doi":"10.1093/pch/21.supp5.e59","title":"Invasive Pneumococcal Disease in Canadian Children, 2000-2014: The Canadian Immunization Monitoring Program, Active","year":2016,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Pneumococcal conjugate vaccine; Medicine; Conjugate vaccine; Pneumococcal disease; Pediatrics; Immunization; Immunization program; Epidemiology; Vaccination; Serotype; Streptococcus pneumoniae; Immunology; Internal medicine; Antibiotics","score_opus":0.011238428134599548,"score_gpt":0.27529826756119236,"score_spread":0.26405983942659284,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4296778053","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.89214766,0.0016005256,0.000005744003,0.101329185,0.0007196503,0.0027209062,0.00023341818,0.00010600411,0.0011369046],"genre_scores_gemma":[0.99440944,0.0022351434,0.000015296697,0.0020219814,0.0010005491,0.00015875825,0.000067039015,0.000039809365,0.000052003164],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978295,0.00017774946,0.0003657411,0.0003423271,0.00026572988,0.0010189464],"domain_scores_gemma":[0.9969381,0.00011772149,0.00013321472,0.00044084096,0.0001466592,0.0022234744],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003977213,0.00021804369,0.0002552397,0.0007322784,0.0010236313,0.000042836913,0.0001791702,0.00014341937,0.00003526661],"category_scores_gemma":[0.00043427898,0.00013996818,0.00009569113,0.0008343828,0.000093636765,0.00013416546,0.000027858308,0.00053636305,0.0001148192],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012313057,0.00008514373,0.9814073,0.000025297744,0.00002209101,0.000022632832,0.00043657617,0.000014677747,0.000020316782,0.0001337748,0.00030050904,0.017519383],"study_design_scores_gemma":[0.0006800869,0.00013579527,0.98009306,0.00012886657,0.00003539608,0.000021789518,0.00004139401,0.0000080161035,0.00001868891,0.000045220713,0.018632997,0.00015868749],"about_ca_topic_score_codex":0.8649042,"about_ca_topic_score_gemma":0.96991074,"teacher_disagreement_score":0.10500653,"about_ca_system_score_codex":0.0034044464,"about_ca_system_score_gemma":0.0143815195,"threshold_uncertainty_score":0.99120605},"labels":[],"label_agreement":null},{"id":"W4300453423","doi":"","title":"Incidence of invasive pneumococcal disease after introduction of the Universal Infant Immunization Program, British Columbia (2002-2005).","year":2006,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Pneumococcal disease; Incidence (geometry); Immunization; Medicine; Pediatrics; Disease; Streptococcus pneumoniae; Immunology; Mathematics; Biology; Antibody; Microbiology; Internal medicine; Antibiotics","score_opus":0.0041196026146599635,"score_gpt":0.18746686830352294,"score_spread":0.18334726568886298,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4300453423","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973073,0.00011291102,0.000012035635,0.0006459395,0.00023975437,0.0013347857,0.000027210459,0.000041554253,0.000278495],"genre_scores_gemma":[0.9977211,0.000028262073,0.000011799746,0.000056242414,0.00024562073,0.0005388538,0.00001873121,0.000011517171,0.0013678785],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990974,0.00006808476,0.00026611701,0.00015763112,0.00020915957,0.00020157277],"domain_scores_gemma":[0.99924433,0.000021427348,0.00015416865,0.00027595565,0.00021204387,0.000092064125],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012333295,0.00006568978,0.00015870579,0.000051032628,0.00007491001,0.00002817944,0.00007804764,0.00005770554,0.00007930578],"category_scores_gemma":[0.00022922026,0.00007029291,0.00009417384,0.00035620367,0.00025336503,0.00012615831,0.00005147582,0.00011958074,0.0000015932928],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006180233,0.0004725057,0.98410803,0.00011493433,0.00003130129,0.00001825004,0.000029612822,0.000063611136,0.0072274543,0.00002156043,0.0015539657,0.006296946],"study_design_scores_gemma":[0.00045037534,0.00003907079,0.98933977,0.000043996763,0.00012239472,0.000032524033,0.000024350116,0.000013187948,0.0008956961,0.000053636086,0.008918305,0.00006671918],"about_ca_topic_score_codex":0.0028002183,"about_ca_topic_score_gemma":0.010280733,"teacher_disagreement_score":0.0074805147,"about_ca_system_score_codex":0.00009034394,"about_ca_system_score_gemma":0.00016980607,"threshold_uncertainty_score":0.57368904},"labels":[],"label_agreement":null},{"id":"W4301029067","doi":"","title":"Observatoire Régional du Pneumocoque en région Pays de la Loire : résistance de Streptococcus pneumoniae aux antibiotiques en 2011","year":2012,"lang":"fr","type":"preprint","venue":"HAL (Le Centre pour la Communication Scientifique Directe)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Streptococcus pneumoniae; Microbiology; Biology; Antibiotics","score_opus":0.012864487099831162,"score_gpt":0.2568163567163048,"score_spread":0.24395186961647367,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4301029067","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.86108935,0.006990853,0.035011716,0.055559706,0.0013257334,0.0018384648,0.00037167253,0.0007705591,0.037041966],"genre_scores_gemma":[0.96837515,0.010298447,0.005947984,0.0006016411,0.0006294898,0.0002611613,0.0005843488,0.00019388559,0.013107906],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9760003,0.019233473,0.0012324298,0.0013347634,0.00075339153,0.0014456561],"domain_scores_gemma":[0.9879846,0.005085973,0.00093336654,0.0027441361,0.0021837177,0.0010682222],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.011331987,0.0009950036,0.0010505515,0.0003383366,0.001158794,0.00037879875,0.0015550763,0.0016356743,0.00069202133],"category_scores_gemma":[0.002689196,0.001046378,0.0007531549,0.0005200612,0.0011586696,0.0004222573,0.0012951287,0.002698102,0.00037732924],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003754449,0.0030251122,0.6365859,0.0009266489,0.00046584546,0.00014512904,0.01375284,0.00017204232,0.17845778,0.13571288,0.0026247515,0.028093567],"study_design_scores_gemma":[0.0013022509,0.000005262598,0.6621101,0.0073475344,0.0005334779,0.00042348763,0.0004637572,0.0063857823,0.054347932,0.0039433558,0.2618688,0.0012682644],"about_ca_topic_score_codex":0.0026246738,"about_ca_topic_score_gemma":0.0025999527,"teacher_disagreement_score":0.25924405,"about_ca_system_score_codex":0.0017512204,"about_ca_system_score_gemma":0.0028653212,"threshold_uncertainty_score":0.99966043},"labels":[],"label_agreement":null},{"id":"W4301196935","doi":"","title":"Impacto de Streptococcus pneumoniae en las neumonías del niño latinoamericano Impact of Streptococcus pneumoniae in pneumonias of Latin American children","year":2000,"lang":"es","type":"article","venue":"DOAJ (DOAJ: Directory of Open Access Journals)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Streptococcus pneumoniae; Medicine; Latin Americans; Pneumonia; Microbiology; Political science; Biology; Internal medicine; Antibiotics","score_opus":0.08744694046643087,"score_gpt":0.51319977821175,"score_spread":0.42575283774531913,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4301196935","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98760575,0.0037511967,0.000016946991,0.000322294,0.00025331613,0.0031305407,0.0014487177,0.0001016111,0.0033696475],"genre_scores_gemma":[0.98149705,0.016976075,0.00004535784,0.00022023864,0.00040824446,0.00019406958,0.00007804215,0.0002972945,0.0002836336],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.98801136,0.0020082546,0.0046026907,0.0014883479,0.0018252849,0.0020640448],"domain_scores_gemma":[0.9891203,0.0015319055,0.004977004,0.0020719643,0.0007698178,0.0015290274],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.0021729607,0.0016901208,0.0049199937,0.0035849223,0.0003635072,0.00064331654,0.0038093869,0.00060972146,0.010109324],"category_scores_gemma":[0.00094613683,0.0015105751,0.0018281311,0.0059026983,0.0015814566,0.001957748,0.0009822933,0.00242962,0.000073094845],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035234762,0.0018662928,0.61037683,0.00024007917,0.0012903966,0.00012065217,0.00080461864,0.0044317963,0.35022223,0.000009639154,0.0005341366,0.029750975],"study_design_scores_gemma":[0.0022814355,0.00085115834,0.97340024,0.0027908003,0.0008335873,0.000078395016,0.0003874987,0.00041924577,0.016925104,0.00023980839,0.00053103775,0.0012616875],"about_ca_topic_score_codex":0.02168913,"about_ca_topic_score_gemma":0.00049268466,"teacher_disagreement_score":0.3630234,"about_ca_system_score_codex":0.001115581,"about_ca_system_score_gemma":0.0027171886,"threshold_uncertainty_score":0.9998718},"labels":[],"label_agreement":null},{"id":"W4304698211","doi":"10.12688/wellcomeopenres.17099.3","title":"Development and implementation of a customised rapid syndromic diagnostic test for severe pneumonia","year":2022,"lang":"en","type":"preprint","venue":"Wellcome Open Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"NIHR Cambridge Biomedical Research Centre; Academy of Medical Sciences; Medical Research Council; National Institute for Health and Care Research; Wellcome Trust","keywords":"Pneumonia; Medicine; Cohort; Internal medicine","score_opus":0.13188136492158548,"score_gpt":0.43939556216423276,"score_spread":0.3075141972426473,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4304698211","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98308206,0.00027677946,0.000016676831,0.0019751717,0.00022590256,0.010156256,0.000351767,0.000031308937,0.0038840803],"genre_scores_gemma":[0.98852456,0.0005560672,0.001114248,0.0001252218,0.00007900004,0.0067639127,0.0004303039,0.00007341544,0.002333265],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9973056,0.00023146986,0.00063645537,0.0006693354,0.0006686396,0.000488547],"domain_scores_gemma":[0.99652225,0.002132348,0.00019572675,0.0005839916,0.00032888484,0.00023681787],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0024344593,0.00023956186,0.0006133072,0.00054926315,0.00054330635,0.000135189,0.00056274206,0.00017300577,0.0013835464],"category_scores_gemma":[0.00078813644,0.00022468412,0.000105546955,0.00032646957,0.00014329152,0.000066163724,0.0026553855,0.0010027771,0.000026090187],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001362423,0.004584213,0.5294113,0.021696374,0.00274856,0.00061790785,0.011163367,0.00024398243,0.17808865,0.0015308447,0.028436476,0.22011587],"study_design_scores_gemma":[0.009694176,0.0025188802,0.46147725,0.001332578,0.0003085214,0.00026010032,0.0057339887,0.00020790499,0.010838568,0.00054987957,0.50625473,0.0008234405],"about_ca_topic_score_codex":0.00039521098,"about_ca_topic_score_gemma":0.0001261081,"teacher_disagreement_score":0.47781825,"about_ca_system_score_codex":0.0004529109,"about_ca_system_score_gemma":0.0022723197,"threshold_uncertainty_score":0.9995293},"labels":[],"label_agreement":null},{"id":"W4306248079","doi":"10.1371/journal.pone.0275923","title":"Pneumococcal vaccination uptake and missed opportunities for vaccination among Canadian adults: A cross-sectional analysis of the Canadian Longitudinal Study on Aging (CLSA)","year":2022,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dalhousie University; University of Calgary; McGill University Health Centre","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; Canada Research Chairs; Government of Canada","keywords":"Vaccination; Medicine; Odds ratio; Confidence interval; Logistic regression; Pneumococcal vaccination; Cross-sectional study; Influenza vaccine; Odds; Pneumococcal vaccine; Cohort; Pediatrics; Demography; Immunology; Internal medicine; Streptococcus pneumoniae","score_opus":0.1624059946539636,"score_gpt":0.3203435083084363,"score_spread":0.15793751365447267,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4306248079","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99607295,0.00001412007,0.0000028719185,0.0018087572,0.00009489373,0.0011226612,0.00031159748,0.000020108231,0.000552016],"genre_scores_gemma":[0.9986762,0.0000027050587,0.0000061549254,0.0003222996,0.000060763425,0.00032929645,0.00010983952,0.00001646816,0.00047630735],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986821,0.000085759835,0.00030598877,0.00026470152,0.00041930669,0.00024218035],"domain_scores_gemma":[0.9989339,0.00007929228,0.0001352248,0.00022483067,0.00034666064,0.00028008607],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039004802,0.00012495408,0.00026551314,0.0010951937,0.0012424142,0.000049645732,0.000094142175,0.00005730983,0.0002754357],"category_scores_gemma":[0.00017317121,0.00011190746,0.00012080617,0.0007224612,0.000027581365,0.0000832633,0.000024802348,0.00024060717,4.4169593e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042318483,0.00061454816,0.99649054,0.000044980927,0.0011709756,0.000011566691,0.0005221785,0.000223168,0.00060555374,0.00007536856,0.00002103136,0.00017777935],"study_design_scores_gemma":[0.0009638103,0.000517954,0.9920071,0.000022001768,0.0011842315,0.000005233012,0.0011488281,0.003768364,0.00011900374,0.00001191487,0.00014850347,0.0001030951],"about_ca_topic_score_codex":0.22380309,"about_ca_topic_score_gemma":0.94223696,"teacher_disagreement_score":0.71843386,"about_ca_system_score_codex":0.00075319526,"about_ca_system_score_gemma":0.00070688326,"threshold_uncertainty_score":0.9555772},"labels":[],"label_agreement":null},{"id":"W4306937573","doi":"10.3390/microorganisms10102074","title":"Trends in Asymptomatic Nasopharyngeal Streptococcus pneumoniae Carriage with qPCR and Culture Analysis","year":2022,"lang":"en","type":"article","venue":"Microorganisms","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Children's Hospital; University of Calgary","funders":"Pfizer Canada; Alberta Precision Laboratories; Pfizer","keywords":"Carriage; Streptococcus pneumoniae; Medicine; Serotype; Sibling; Asymptomatic; Pediatrics; Immunology; Internal medicine; Microbiology; Biology; Pathology; Antibiotics; Psychology","score_opus":0.006909783028195749,"score_gpt":0.24426699532318663,"score_spread":0.23735721229499088,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4306937573","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99737513,0.00019271368,0.000023743129,0.00088765554,0.000056203564,0.00022050523,0.000056552894,0.00008532019,0.0011021782],"genre_scores_gemma":[0.9969054,0.000008152408,0.000059820097,0.0006026662,0.000040334748,0.00007922074,0.000086254804,0.000026820358,0.002191324],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988514,0.00008341207,0.00023239129,0.00034975234,0.00022198503,0.00026103266],"domain_scores_gemma":[0.99946105,0.000017417457,0.000075081705,0.00028215215,0.00002807949,0.00013622124],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011599327,0.00019049294,0.00040660962,0.00065890217,0.00026464465,0.000028923401,0.00008293342,0.000061886574,0.0008825742],"category_scores_gemma":[0.0000061516157,0.00014914038,0.000105450286,0.0019482583,0.00006693878,0.000056647445,0.00008407186,0.00037953918,0.000008531858],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025041536,0.0002614345,0.47295356,0.000028997418,0.0005527546,0.00039047853,0.0028172638,0.00013600831,0.520978,0.000023808065,0.00046955125,0.0013631381],"study_design_scores_gemma":[0.0032899177,0.0014793958,0.9630395,0.000027798189,0.001832437,0.0005572024,0.0018921905,0.00019461395,0.011429209,0.000037852402,0.015775722,0.0004441651],"about_ca_topic_score_codex":0.000049511797,"about_ca_topic_score_gemma":0.00025038238,"teacher_disagreement_score":0.5095488,"about_ca_system_score_codex":0.0001538322,"about_ca_system_score_gemma":0.000063527405,"threshold_uncertainty_score":0.9663568},"labels":[],"label_agreement":null},{"id":"W4307055594","doi":"10.1093/pch/pxac100.068","title":"69 Triage Administration of Ondansetron for Gastroenteritis in children; a randomized controlled trial","year":2022,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Ondansetron; Medicine; Vomiting; Triage; Emergency department; Randomized controlled trial; Pediatrics; Placebo; Emergency medicine; Anesthesia; Surgery; Psychiatry","score_opus":0.009967265624984673,"score_gpt":0.2921486100428927,"score_spread":0.28218134441790804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4307055594","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9722469,0.0009123173,0.0006600344,0.008404494,0.0008092107,0.016340347,0.00026021225,0.00004778276,0.00031874445],"genre_scores_gemma":[0.99466735,0.0004584805,0.00013742152,0.0013639644,0.00058014796,0.0025019248,0.00020838666,0.000022728733,0.000059607206],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9970594,0.00068159937,0.0012754875,0.00026659714,0.00036372783,0.00035320676],"domain_scores_gemma":[0.9985059,0.00042493493,0.00064115337,0.00020325184,0.000061133695,0.00016365798],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0027354695,0.00016183475,0.0016098837,0.0004970423,0.0002796603,0.000009100805,0.00007846475,0.000057171736,0.0000733459],"category_scores_gemma":[0.0007341044,0.00014082197,0.0006266614,0.00041458494,0.000046407826,0.000037024027,0.00002731162,0.00038501943,0.0000010609615],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.98329514,0.0014743857,0.01341323,0.00010035122,0.00012201622,0.0000038498215,0.00020704845,0.000031723735,0.000047443125,0.00034601218,0.00044599434,0.0005128144],"study_design_scores_gemma":[0.9827985,0.0053238375,0.010324916,0.000022567869,0.00019155913,0.000072649585,0.000061722145,0.00011211784,0.000009372428,0.00006682911,0.00093042967,0.00008547608],"about_ca_topic_score_codex":0.00007025181,"about_ca_topic_score_gemma":0.000032373737,"teacher_disagreement_score":0.02242048,"about_ca_system_score_codex":0.00022784136,"about_ca_system_score_gemma":0.0009228241,"threshold_uncertainty_score":0.57425535},"labels":[],"label_agreement":null},{"id":"W4307966634","doi":"10.3899/jrheum.220771","title":"Implementing a Nurse-Driven Protocol for Pneumococcal Vaccination in an Academic Rheumatology Clinic","year":2022,"lang":"en","type":"article","venue":"The Journal of Rheumatology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Vaccination; Pneumococcal polysaccharide vaccine; Pneumococcal conjugate vaccine; Pneumococcal vaccination; Rheumatology; Internal medicine; Pneumococcal vaccine; Pneumococcal infections; Immunization; Protocol (science); Pediatrics; Immunology; Streptococcus pneumoniae; Pneumococcal disease; Antigen; Alternative medicine; Antibiotics","score_opus":0.04606784302759668,"score_gpt":0.40751733426732506,"score_spread":0.36144949123972836,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4307966634","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97134674,0.000014150331,0.0003143217,0.0041051903,0.00031920764,0.02377492,0.0000042198153,0.000021841131,0.00009940216],"genre_scores_gemma":[0.9762845,0.000016050237,0.00008017621,0.00026103514,0.000018040833,0.023267196,0.0000036396136,0.00002648134,0.000042868312],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9973,0.0007145731,0.0012152724,0.00014011809,0.00020194311,0.00042808417],"domain_scores_gemma":[0.99803907,0.0005510358,0.0009461197,0.00020167293,0.00016559272,0.00009654185],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022519203,0.00013651652,0.0005565521,0.00041440324,0.00039212883,0.0000059987447,0.00030426015,0.00012303877,0.00048130067],"category_scores_gemma":[0.00028983524,0.000096973745,0.00014836079,0.0002655505,0.000059135196,0.00012891815,0.00008325894,0.0011153176,0.0000069046587],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011531775,0.00037054456,0.98500603,0.00013685036,0.00008207832,0.000012740791,0.0016117143,0.00019190923,0.007886237,0.0006377139,0.0009231715,0.0019878154],"study_design_scores_gemma":[0.05207313,0.021214377,0.53621906,0.0006696175,0.0006094203,0.1621085,0.019623343,0.0099730315,0.00079139136,0.006760423,0.1890842,0.0008734924],"about_ca_topic_score_codex":0.00001951873,"about_ca_topic_score_gemma":0.00008198011,"teacher_disagreement_score":0.44878697,"about_ca_system_score_codex":0.00014886928,"about_ca_system_score_gemma":0.00038733988,"threshold_uncertainty_score":0.5269905},"labels":[],"label_agreement":null},{"id":"W4308620242","doi":"10.1002/ange.202211940","title":"Synthetic Zwitterionic <i>Streptococcus pneumoniae</i> Type 1 Oligosaccharides Carrying Labile <i>O</i>‐Acetyl Esters","year":2022,"lang":"en","type":"article","venue":"Angewandte Chemie","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"H2020 European Research Council; Agencia Estatal de Investigación; Aard- en Levenswetenschappen, Nederlandse Organisatie voor Wetenschappelijk Onderzoek","keywords":"Chemistry; Trisaccharide; Glycosidic bond; Polysaccharide; Hydrolysis; Oligosaccharide; Stereochemistry; Nuclear magnetic resonance spectroscopy; Galactose; Carbohydrate conformation; Biochemistry; Enzyme","score_opus":0.019511973893964543,"score_gpt":0.2612735349838394,"score_spread":0.24176156108987484,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4308620242","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9870566,0.0006207516,0.000003846763,0.0025476678,0.00069388846,0.0004487641,0.00004641288,0.00026300448,0.008319027],"genre_scores_gemma":[0.99450165,0.00009760306,0.000014539371,0.0031707634,0.00019968017,0.00027173976,0.000049421524,0.000054588236,0.0016399925],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984382,0.000046505025,0.00029783492,0.0004361627,0.00034481732,0.00043647594],"domain_scores_gemma":[0.99899423,0.00006569742,0.000108026215,0.0005433872,0.000079027646,0.00020960897],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001866521,0.00024152112,0.0003448372,0.00012347463,0.0005221229,0.000036626334,0.00016964001,0.00007844801,0.0010323114],"category_scores_gemma":[0.00006062612,0.00022688243,0.0001898449,0.0005109146,0.0001012335,0.000087927074,0.0001808226,0.0004856521,0.000110450674],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026371772,0.00014544188,0.023064526,0.00007644017,0.00008185997,0.00011239216,0.00033230433,0.0000533974,0.97110456,0.000015991513,0.0046210657,0.00036562164],"study_design_scores_gemma":[0.00087950943,0.0005350801,0.00184008,0.00006999341,0.0002048218,0.000513376,0.0005367418,0.000011435892,0.64999706,0.000036463825,0.3450292,0.00034623023],"about_ca_topic_score_codex":0.000034500306,"about_ca_topic_score_gemma":0.0000066317252,"teacher_disagreement_score":0.34040812,"about_ca_system_score_codex":0.0002428873,"about_ca_system_score_gemma":0.00021555199,"threshold_uncertainty_score":0.9998809},"labels":[],"label_agreement":null},{"id":"W4308638869","doi":"10.1002/anie.202211940","title":"Synthetic Zwitterionic <i>Streptococcus pneumoniae</i> Type 1 Oligosaccharides Carrying Labile <i>O</i>‐Acetyl Esters","year":2022,"lang":"en","type":"article","venue":"Angewandte Chemie International Edition","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"China Scholarship Council; Instituto de Salud Carlos III; H2020 European Research Council; Agencia Estatal de Investigación; Aard- en Levenswetenschappen, Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Nederlandse Organisatie voor Wetenschappelijk Onderzoek","keywords":"Chemistry; Trisaccharide; Glycosidic bond; Polysaccharide; Hydrolysis; Oligosaccharide; Stereochemistry; Nuclear magnetic resonance spectroscopy; Galactose; Carbohydrate conformation; Biochemistry; Enzyme","score_opus":0.01683029971092561,"score_gpt":0.2705180046623379,"score_spread":0.2536877049514123,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4308638869","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9643436,0.00017283943,0.0002181288,0.011691906,0.0064283074,0.00057370774,0.0002687037,0.00033827467,0.01596454],"genre_scores_gemma":[0.993518,0.000075098214,0.000018883635,0.0033141905,0.0010519944,0.0003123749,0.00044993017,0.000034414963,0.0012251358],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985322,0.000033947646,0.00030062217,0.00036133578,0.00052761636,0.00024430585],"domain_scores_gemma":[0.9992215,0.000064289045,0.00014156148,0.00025846128,0.00019120204,0.00012300508],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00016773466,0.00018195804,0.00020049926,0.00017729784,0.00034317185,0.000048178357,0.00017296517,0.000067335815,0.0019998315],"category_scores_gemma":[0.0000945885,0.00018352909,0.00015775589,0.00027724396,0.00007526736,0.00018860574,0.00013011236,0.00040519994,0.00009031962],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005388801,0.00025305414,0.011446961,0.000038590155,0.00013183121,0.00007533054,0.00020767954,0.00017419469,0.9691022,0.00008092903,0.017845275,0.0005900542],"study_design_scores_gemma":[0.0010418135,0.00040517113,0.0038566214,0.000100473066,0.00012805937,0.0006000721,0.00041891026,0.00010992066,0.603644,0.00017640172,0.3892143,0.0003042167],"about_ca_topic_score_codex":0.000023185303,"about_ca_topic_score_gemma":0.0000044464923,"teacher_disagreement_score":0.37136903,"about_ca_system_score_codex":0.00043902994,"about_ca_system_score_gemma":0.00014687663,"threshold_uncertainty_score":0.99891245},"labels":[],"label_agreement":null},{"id":"W4308956014","doi":"10.1001/jamapediatrics.2022.4123","title":"Short-Course vs Long-Course Antibiotic Therapy for Children With Nonsevere Community-Acquired Pneumonia","year":2022,"lang":"en","type":"review","venue":"JAMA Pediatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Pneumonia; Short course; Antibiotics; Course (navigation); Antibiotic therapy; Intensive care medicine; Community-acquired pneumonia; Pediatrics; Internal medicine; Microbiology","score_opus":0.0533959978117684,"score_gpt":0.34530246636581274,"score_spread":0.29190646855404434,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4308956014","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.009929903,0.98183817,0.00004688647,0.00038366675,0.0008176648,0.005225995,0.0009738584,0.0003351505,0.00044871823],"genre_scores_gemma":[0.0024345438,0.99166346,0.00007796256,0.0007293961,0.0019651155,0.0003949404,0.0019296308,0.00026919253,0.0005357428],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9964495,0.0006136656,0.00085935637,0.0006428368,0.0006746222,0.0007600193],"domain_scores_gemma":[0.9963957,0.0008703102,0.00054048136,0.0015780735,0.00020740044,0.00040803643],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008466759,0.00091728615,0.0023899383,0.0005012275,0.0011318133,0.00013382097,0.0006538064,0.0007380794,0.00013084442],"category_scores_gemma":[0.00016505094,0.00068037474,0.001067678,0.0014406862,0.00019790683,0.00015343544,0.00017625788,0.002137317,0.000047487203],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016828175,0.0029247007,0.058520284,0.009908706,0.0014999487,0.00017998702,0.00016917905,0.000007164593,0.000001894258,0.000016620681,0.006770803,0.9198324],"study_design_scores_gemma":[0.0021051725,0.0025650223,0.051029567,0.0011008921,0.009112781,0.0017693606,0.000070454575,0.0000030057686,6.9608257e-7,0.0000041797343,0.93131566,0.00092320936],"about_ca_topic_score_codex":0.00003729031,"about_ca_topic_score_gemma":0.000029965579,"teacher_disagreement_score":0.9245449,"about_ca_system_score_codex":0.00028415403,"about_ca_system_score_gemma":0.0019884661,"threshold_uncertainty_score":0.99956477},"labels":[],"label_agreement":null},{"id":"W4309268803","doi":"10.1136/bmjopen-2022-062360","title":"Novel care pathway to optimise antimicrobial prescribing for uncomplicated community-acquired pneumonia: study protocol for a prospective before–after cohort study in the emergency department of a tertiary care Canadian children’s hospital","year":2022,"lang":"en","type":"article","venue":"BMJ Open","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University; University of British Columbia; Impact","funders":"","keywords":"Medicine; Emergency department; Community-acquired pneumonia; Pneumonia; Pediatrics; Intensive care medicine; Prospective cohort study; Emergency medicine; Internal medicine; Psychiatry","score_opus":0.041055200443266826,"score_gpt":0.36951623089710156,"score_spread":0.32846103045383473,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4309268803","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5288293,9.938827e-7,0.0000082807555,0.00026207202,0.000057015266,0.4697225,0.0010535616,0.000013110037,0.000053168256],"genre_scores_gemma":[0.50923544,1.1771299e-8,0.000050920065,0.00017258117,0.000026139924,0.4903535,0.00012161459,0.000025974585,0.000013812767],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99791884,0.0003391024,0.00060754997,0.00043991246,0.00029182882,0.00040279026],"domain_scores_gemma":[0.99844193,0.00003143385,0.00016306041,0.00086220156,0.00034378807,0.00015756027],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007518701,0.00026714784,0.0004937142,0.00020829012,0.0009611223,0.000050344075,0.00068502355,0.00004671544,0.000024544159],"category_scores_gemma":[0.00007043661,0.00020543241,0.00014589663,0.00039400603,0.000030777363,0.000093324634,0.00056988216,0.00026290538,8.744743e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00086171034,0.0050700456,0.9290031,0.00015884645,0.00025824134,0.00001963516,0.0632775,0.00016059887,0.0007534241,0.0000019734402,0.00028492374,0.00014997252],"study_design_scores_gemma":[0.0077663627,0.010218942,0.93976414,0.00008316338,0.00016611666,0.000024238498,0.040878396,0.000012829243,0.00013757874,0.000002046139,0.00071113947,0.00023506896],"about_ca_topic_score_codex":0.04491979,"about_ca_topic_score_gemma":0.2852787,"teacher_disagreement_score":0.24035892,"about_ca_system_score_codex":0.00070196454,"about_ca_system_score_gemma":0.0007815973,"threshold_uncertainty_score":0.96144015},"labels":[],"label_agreement":null},{"id":"W4310275049","doi":"10.1038/s41541-022-00572-z","title":"A highly immunogenic vaccine platform against encapsulated pathogens using chimeric probiotic Escherichia coli membrane vesicles","year":2022,"lang":"en","type":"article","venue":"npj Vaccines","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Umeå Universitet; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology; Japan Agency for Medical Research and Development; Karolinska Institutet; Nihon University","keywords":"Immunogenicity; Immune system; Adjuvant; Biology; Microbiology; Escherichia coli; Antigen; ELISPOT; Vaccination; Virology; Immunology; T cell; Biochemistry; Gene","score_opus":0.020061104714728654,"score_gpt":0.2526604921828822,"score_spread":0.23259938746815356,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4310275049","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957361,0.0008328419,0.000020079824,0.00075348245,0.0008496869,0.00089716865,0.000050376573,0.00035487645,0.0005053373],"genre_scores_gemma":[0.9973188,0.00011866313,0.00026733486,0.0011150467,0.00035345092,0.00009595991,0.00011098445,0.00009104818,0.0005286874],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99790376,0.000096651005,0.0006060209,0.00048564945,0.00034782744,0.0005600621],"domain_scores_gemma":[0.9987799,0.000053411477,0.00024501001,0.0005751533,0.00013811784,0.00020841359],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00024521377,0.0003778323,0.0005972249,0.00036068063,0.0008779633,0.000037489714,0.00021089111,0.000119119206,0.00068597315],"category_scores_gemma":[0.00006912471,0.00033171903,0.0002707048,0.0014262305,0.000023848288,0.00015854326,0.00018799119,0.00053800707,0.00005049452],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017738622,0.00034746542,0.00909728,0.0000958907,0.00027764912,0.00012548896,0.0002221637,0.0013400002,0.9866119,0.00002593236,0.00022048275,0.0014583792],"study_design_scores_gemma":[0.023635427,0.005837334,0.4944375,0.00047534995,0.003275729,0.004100885,0.0024095967,0.03071874,0.35576305,0.00024686294,0.07587694,0.0032226057],"about_ca_topic_score_codex":0.000059285245,"about_ca_topic_score_gemma":0.000008566839,"teacher_disagreement_score":0.6308488,"about_ca_system_score_codex":0.0002731036,"about_ca_system_score_gemma":0.00032123137,"threshold_uncertainty_score":0.9999135},"labels":[],"label_agreement":null},{"id":"W4310551861","doi":"10.1097/inf.0000000000003748","title":"Invasive Pneumococcal Disease in High-risk Children: A 10-Year Retrospective Study","year":2022,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Clinical Evaluative Sciences; University of Toronto; SickKids Foundation; Mount Sinai Hospital; Public Health Ontario; Hospital for Sick Children","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Pediatrics; Meningitis; Pneumococcal vaccine; Vaccination; Internal medicine; Pneumonia; Streptococcus pneumoniae; Immunology; Antibiotics","score_opus":0.005826766653028656,"score_gpt":0.23457599882436772,"score_spread":0.22874923217133908,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4310551861","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961219,0.0002511204,0.000009148133,0.00076428853,0.00078294537,0.0015198268,0.00016397615,0.0001216562,0.000265176],"genre_scores_gemma":[0.9964568,0.0003410718,0.0000014520172,0.00035135314,0.0022373702,0.0003029045,0.000012008213,0.000055521792,0.00024153577],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9965279,0.0010366936,0.0005725657,0.00043050176,0.0008921047,0.0005402243],"domain_scores_gemma":[0.9978419,0.0001721556,0.00040515224,0.0005399219,0.0001853084,0.0008555912],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009138825,0.00032122585,0.0004157751,0.00073091045,0.0019711002,0.000094649615,0.00026646332,0.000043708777,0.0015081347],"category_scores_gemma":[0.001037971,0.00023659012,0.00037780547,0.0014193454,0.000090478214,0.00015602485,0.00026919102,0.0020500359,0.000119631135],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005851806,0.003384959,0.99073416,0.000013723971,0.000187332,0.0008911232,0.00047728184,0.0027667782,0.00001712176,0.000030946976,0.00085054233,0.000060853115],"study_design_scores_gemma":[0.004722662,0.001541867,0.9893889,0.0000075297303,0.0016551233,0.000532779,0.00040951848,0.000040008406,4.1486925e-7,0.0013429223,0.00009382489,0.00026444803],"about_ca_topic_score_codex":0.00015719481,"about_ca_topic_score_gemma":0.000052365387,"teacher_disagreement_score":0.0041374816,"about_ca_system_score_codex":0.00087302196,"about_ca_system_score_gemma":0.0013431151,"threshold_uncertainty_score":0.9994046},"labels":[],"label_agreement":null},{"id":"W4310805162","doi":"10.1016/j.jped.2022.11.003","title":"Impact of PCV10 on pediatric pneumococcal disease burden in Brazil: time for new recommendations?","year":2022,"lang":"en","type":"review","venue":"Jornal de Pediatria","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Government of Canada","keywords":"Medicine; Pneumococcal disease; Disease; Environmental health; Family medicine; Intensive care medicine; Pediatrics; Streptococcus pneumoniae; Internal medicine; Microbiology","score_opus":0.0567390942023206,"score_gpt":0.410518350455776,"score_spread":0.3537792562534554,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4310805162","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004403556,0.9878125,0.00002471146,0.0009167064,0.0009055603,0.0037405717,0.0014658415,0.00010476449,0.0006257714],"genre_scores_gemma":[0.000082550076,0.9918758,0.00006329385,0.00007849059,0.005332338,0.00032809406,0.000609863,0.00010287148,0.0015266539],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99743176,0.00027072892,0.0010663476,0.00045623374,0.00031490903,0.0004600501],"domain_scores_gemma":[0.9972021,0.0010257739,0.0006205175,0.00046057827,0.000055091732,0.0006359509],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00051156234,0.00045060742,0.0016171661,0.0011877535,0.000117393574,0.000024752282,0.00023221882,0.00028116137,0.0021928349],"category_scores_gemma":[0.00094683655,0.0003614543,0.0019027492,0.00094553916,0.000021677097,0.00007062486,0.000078236044,0.000920921,0.0001383815],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011133841,0.0021612488,0.023046881,0.02565314,0.0009507226,0.00028839277,0.00017829567,0.00026030376,0.000032160773,0.00009195316,0.12667847,0.81954503],"study_design_scores_gemma":[0.0015644364,0.001072194,0.006101827,0.0006557113,0.003323106,0.00006448598,0.0000029411797,0.00003291467,6.010649e-8,0.000091664566,0.98675454,0.0003361185],"about_ca_topic_score_codex":0.000060290295,"about_ca_topic_score_gemma":0.0000032583562,"teacher_disagreement_score":0.86007607,"about_ca_system_score_codex":0.0008670601,"about_ca_system_score_gemma":0.0050738673,"threshold_uncertainty_score":0.9998838},"labels":[],"label_agreement":null},{"id":"W4311525183","doi":"10.1093/ofid/ofac492.079","title":"887. Race and ethnicity differences in hospital length of stay for children with acute osteomyelitis in the United States","year":2022,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Medicine; Medicaid; Rate ratio; Incidence (geometry); Quartile; Osteomyelitis; Confidence interval; Internal medicine; Surgery; Health care","score_opus":0.01036009111931199,"score_gpt":0.27184902071110906,"score_spread":0.2614889295917971,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4311525183","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945299,0.00010843304,0.000016594553,0.002569477,0.000045141915,0.0019176819,0.0005625661,0.000018178745,0.00023199744],"genre_scores_gemma":[0.9984298,0.00013654308,0.000005560915,0.0005812387,0.000015856473,0.0005695607,0.00018699629,0.000015261094,0.000059206828],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99900025,0.00015649803,0.00020870975,0.0002255813,0.0001746355,0.00023430836],"domain_scores_gemma":[0.9993997,0.00018925604,0.0001064319,0.00019524664,0.000049346247,0.00005997407],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015046685,0.00014078249,0.000306697,0.00021309264,0.00025713714,0.00004673765,0.0001657506,0.00002875302,0.000045660632],"category_scores_gemma":[0.00004912317,0.00009160256,0.000051305382,0.00054639764,0.00013747052,0.000134505,0.00016495973,0.00019911924,5.6685246e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016479843,0.00066302274,0.9964465,0.000020342588,0.00013439277,0.000017998746,0.00095159514,0.00010944751,0.000023651917,0.0002933985,0.00030831122,0.000866575],"study_design_scores_gemma":[0.0032268222,0.0038328213,0.98753893,0.00003322282,0.0001856692,0.00006648169,0.0029422126,0.0001101128,0.000027479624,0.00048157785,0.0014110754,0.00014360428],"about_ca_topic_score_codex":0.0018247219,"about_ca_topic_score_gemma":0.001169148,"teacher_disagreement_score":0.008907545,"about_ca_system_score_codex":0.000058733836,"about_ca_system_score_gemma":0.00011843503,"threshold_uncertainty_score":0.3735444},"labels":[],"label_agreement":null},{"id":"W4311735609","doi":"10.1093/ofid/ofac492.638","title":"586. Systematic Literature Review of the 13-valent Pneumococcal Conjugate Vaccine (PCV13) Effectiveness Against Invasive Pneumococcal Disease in Children Globally","year":2022,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Pneumococcal disease; Vaccination; Pediatrics; Cochrane Library; Observational study; Systematic review; Streptococcus pneumoniae; MEDLINE; Meta-analysis; Internal medicine; Immunology","score_opus":0.00552902741225124,"score_gpt":0.2591541609077534,"score_spread":0.25362513349550214,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4311735609","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9495562,0.032478876,0.0000029616772,0.0018234998,0.00060102687,0.012716631,0.00090972753,0.00011619883,0.001794889],"genre_scores_gemma":[0.98605144,0.0059680743,5.9565326e-7,0.0044431733,0.000059298993,0.0030723526,0.00024769118,0.00006062113,0.000096739896],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99547756,0.0016206588,0.0009837365,0.00066969247,0.00070684403,0.0005415207],"domain_scores_gemma":[0.9973047,0.00030304192,0.0005485231,0.0011154782,0.00026873624,0.0004595234],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000681243,0.0004909527,0.0013197826,0.0002536141,0.00066809746,0.00012371482,0.00082193594,0.00008453343,0.00013476747],"category_scores_gemma":[0.0010838226,0.00034411394,0.0006973807,0.0016138678,0.00011635441,0.00030654276,0.001327255,0.0006368817,0.00002250013],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002192785,0.0018434845,0.93301773,0.061161336,0.0003745925,0.00015905248,0.000042439042,0.0005171357,0.0018466598,0.00032548673,0.00040163868,0.0000911964],"study_design_scores_gemma":[0.0031706083,0.00055475696,0.9081774,0.085580595,0.0010273701,0.0003266191,0.000047342102,0.000029295128,0.000110993315,0.000237141,0.00034816324,0.00038973134],"about_ca_topic_score_codex":0.000071570765,"about_ca_topic_score_gemma":0.000079216996,"teacher_disagreement_score":0.036495265,"about_ca_system_score_codex":0.0005754286,"about_ca_system_score_gemma":0.000883706,"threshold_uncertainty_score":0.9999011},"labels":[],"label_agreement":null},{"id":"W4311750320","doi":"10.1093/ofid/ofac492.1303","title":"1673. <i>In vitro</i> Activities of Ceftaroline and Comparator Agents against Bacterial Pathogens Frequently Causing Community-Acquired Respiratory Tract Infections in Patients from a Global Population: ATLAS Surveillance Program 2017-2020","year":2022,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Moraxella catarrhalis; Medicine; Streptococcus pneumoniae; Haemophilus influenzae; Microbiology; Broth microdilution; Staphylococcus aureus; Respiratory tract infections; Population; Bacterial pneumonia; Pneumonia; Internal medicine; Antibiotics; Biology; Respiratory system; Minimum inhibitory concentration; Bacteria","score_opus":0.02206754184400463,"score_gpt":0.30404439907638847,"score_spread":0.28197685723238386,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4311750320","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99336594,0.00011614957,0.0000020971634,0.000100676625,0.00055842084,0.001884856,0.0031677408,0.000105564926,0.0006985625],"genre_scores_gemma":[0.99714357,0.000020682137,0.000011771326,0.0006071511,0.00007199676,0.00047056773,0.0016331896,0.000035175504,0.0000058731207],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99719495,0.0009670788,0.00069213787,0.00039398993,0.0003356576,0.00041620753],"domain_scores_gemma":[0.99870557,0.00014649786,0.00036820152,0.00045869124,0.00009035431,0.00023071615],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002391344,0.00032015672,0.0007431084,0.00022702238,0.00080220023,0.00011805848,0.0001706438,0.00010139889,0.00009246437],"category_scores_gemma":[0.00012918872,0.00034210092,0.00015108516,0.0007623928,0.00015805404,0.00044832574,0.00045455314,0.00037760937,0.0000024311016],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000601317,0.007896499,0.9842132,0.00004681013,0.00009497482,0.000057794536,0.00014630993,0.00034583567,0.0048146225,0.000008805357,0.00030296698,0.0014708617],"study_design_scores_gemma":[0.0067609064,0.0013823708,0.988591,0.00007664454,0.00007896848,0.000028566039,0.00033006433,0.00012431349,0.00008339998,0.000088342225,0.0021465016,0.00030892907],"about_ca_topic_score_codex":0.0048185256,"about_ca_topic_score_gemma":0.005189291,"teacher_disagreement_score":0.006514128,"about_ca_system_score_codex":0.00067679153,"about_ca_system_score_gemma":0.000269775,"threshold_uncertainty_score":0.9999031},"labels":[],"label_agreement":null},{"id":"W4311815793","doi":"10.1101/2022.12.16.22283251","title":"Sustained reductions in life-threatening invasive bacterial diseases during the first two years of the COVID-19 pandemic: analyses of prospective surveillance data from 30 countries participating in the IRIS Consortium","year":2022,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"Wellcome Trust","keywords":"Pandemic; Streptococcus pneumoniae; Haemophilus influenzae; Neisseria meningitidis; Medicine; Incidence (geometry); Serotype; Disease surveillance; Confidence interval; Disease; Coronavirus disease 2019 (COVID-19); Virology; Biology; Internal medicine; Infectious disease (medical specialty); Microbiology","score_opus":0.10930757768541777,"score_gpt":0.38197351342796265,"score_spread":0.2726659357425449,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4311815793","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944009,0.0004993319,0.000007031935,0.0022794784,0.00037957585,0.0011000062,0.0012788849,0.000029065872,0.000025690984],"genre_scores_gemma":[0.9984951,0.00028735842,0.0000047587464,0.00023261616,0.00022140736,0.00060257834,0.00012489203,0.000020559131,0.000010701496],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99727786,0.0008402381,0.0007389788,0.00048145643,0.00040941237,0.00025206787],"domain_scores_gemma":[0.99598217,0.0018006405,0.00063952134,0.0013838777,0.00011838214,0.0000753942],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009420139,0.0002101516,0.000590061,0.00015545769,0.0003208162,0.000035258287,0.00070711004,0.00008684938,0.00025776203],"category_scores_gemma":[0.006934425,0.00012456435,0.00013897536,0.00057819317,0.00060504675,0.0000637739,0.0012235421,0.0007472546,7.893745e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017640891,0.0001314382,0.98685974,0.00019507713,0.00024368598,0.000032475033,0.004403845,0.004812055,0.0030704243,0.000010279093,0.000058444617,0.000006119561],"study_design_scores_gemma":[0.0011024496,0.00003317605,0.992541,0.00019215874,0.0002952174,0.000010718593,0.004576573,0.000111641624,0.00023781159,0.00014352384,0.00063177507,0.00012395778],"about_ca_topic_score_codex":0.0047468115,"about_ca_topic_score_gemma":0.0077150725,"teacher_disagreement_score":0.0059924107,"about_ca_system_score_codex":0.0002600023,"about_ca_system_score_gemma":0.001339312,"threshold_uncertainty_score":0.8301655},"labels":[],"label_agreement":null},{"id":"W4312085136","doi":"10.1016/j.celrep.2022.111851","title":"Pneumolysin promotes host cell necroptosis and bacterial competence during pneumococcal meningitis as shown by whole-animal dual RNA-seq","year":2022,"lang":"en","type":"article","venue":"Cell Reports","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"H2020 European Research Council; European Molecular Biology Laboratory; Joint Programming Initiative on Antimicrobial Resistance; Center for Information Technology; ZonMw; Université de Lausanne; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Rijksuniversiteit Groningen; Amsterdam University Medical Centers; European Research Council; Universiteit Leiden; National Science Foundation","keywords":"Pneumolysin; Necroptosis; RNA-Seq; Biology; Meningitis; Microbiology; Streptococcus pneumoniae; Virology; Host (biology); Transcriptome; Immunology; Gene; Gene expression; Genetics; Medicine; Programmed cell death; Apoptosis; Antibiotics","score_opus":0.00706076399575355,"score_gpt":0.2203094066108705,"score_spread":0.21324864261511695,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4312085136","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933338,0.00014846573,0.0000024550795,0.0007630482,0.0006966924,0.0005576627,0.000046834226,0.00016408626,0.004286946],"genre_scores_gemma":[0.99443305,0.00002268588,0.000034548877,0.00008402597,0.00024210439,0.00012951404,0.000090813606,0.00006048463,0.004902754],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99754864,0.00010854023,0.00061817904,0.0007246073,0.0004990277,0.00050101685],"domain_scores_gemma":[0.9987069,0.000053610584,0.000340349,0.00044703812,0.00007666675,0.00037546203],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00025578262,0.0003185725,0.00047566695,0.00015798767,0.00080943643,0.000101527454,0.0000781044,0.00011117216,0.0008238664],"category_scores_gemma":[0.0000623556,0.00028606164,0.00015971574,0.00027443416,0.00016150044,0.00014325156,0.00030714736,0.0005430104,0.00002290819],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008413193,0.0003842058,0.013797724,0.000106379106,0.000034323333,0.004465601,0.0003478786,0.0000056785175,0.9802388,0.0000014521685,0.0004447772,0.00008904167],"study_design_scores_gemma":[0.0010716355,0.0013394457,0.03132899,0.000047289443,0.0002048435,0.011141685,0.00035702833,0.000028814478,0.90206146,0.000009541711,0.051949278,0.00045998962],"about_ca_topic_score_codex":0.00010026108,"about_ca_topic_score_gemma":0.000003979685,"teacher_disagreement_score":0.07817735,"about_ca_system_score_codex":0.00014634599,"about_ca_system_score_gemma":0.00024077373,"threshold_uncertainty_score":0.9999592},"labels":[],"label_agreement":null},{"id":"W4312181086","doi":"10.1038/s41598-022-26838-z","title":"AmiA and AliA peptide ligands are secreted by Klebsiella pneumoniae and inhibit growth of Streptococcus pneumoniae","year":2022,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Bern; Universitair Medisch Centrum Utrecht; York University; Centre Hospitalier Universitaire Vaudois; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Klebsiella pneumoniae; Streptococcus pneumoniae; Peptide; Microbiology; Permease; Biology; Peptide sequence; Biochemistry; Enterobacteriaceae; Escherichia coli; Gene; Antibiotics","score_opus":0.007558024382225962,"score_gpt":0.22839486581599303,"score_spread":0.22083684143376706,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4312181086","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954122,0.00040124694,0.0000052699197,0.0009125165,0.0014495917,0.0005690181,0.000052083982,0.00008878845,0.0011093182],"genre_scores_gemma":[0.9949962,0.00002268427,0.000007424791,0.00015780969,0.000045923483,0.00007903217,0.0000698278,0.000028044016,0.0045930673],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9974524,0.00006240388,0.0006469973,0.0008377645,0.00065054704,0.0003499141],"domain_scores_gemma":[0.99832666,0.00004465117,0.000503524,0.00061452686,0.00020083493,0.00030978245],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008645595,0.00022625065,0.00043443366,0.00033300638,0.00072948175,0.000098621844,0.000073323965,0.00008432087,0.00012348774],"category_scores_gemma":[0.0001539329,0.00020572626,0.000108180575,0.0007129441,0.00050241104,0.00011835631,0.00023988337,0.00034609632,0.000002841247],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000069932294,0.00010716846,0.42548275,0.000100774676,0.000040022085,0.00047570528,0.0003350068,0.000004152049,0.5617542,0.000015691117,0.0114711495,0.00020633811],"study_design_scores_gemma":[0.0025639047,0.0017004769,0.3813962,0.00049695995,0.00065607944,0.009540652,0.0034999559,0.00037093624,0.28955424,0.0025590165,0.30631766,0.0013439086],"about_ca_topic_score_codex":0.000042626878,"about_ca_topic_score_gemma":0.000019116673,"teacher_disagreement_score":0.2948465,"about_ca_system_score_codex":0.00006728995,"about_ca_system_score_gemma":0.0001846618,"threshold_uncertainty_score":0.8389274},"labels":[],"label_agreement":null},{"id":"W4312772688","doi":"10.26443/mjm.v20i2.511","title":"Approach to Pneumonia in Immunocompetent Patients","year":2022,"lang":"en","type":"article","venue":"McGill Journal of Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"","keywords":"Medicine; Pneumonia; Intensive care medicine; Etiology; Community-acquired pneumonia; Bacterial pneumonia; Empiric therapy; Internal medicine; Pathology; Alternative medicine","score_opus":0.02499702140028867,"score_gpt":0.27526074058101935,"score_spread":0.25026371918073065,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4312772688","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9729603,0.00016794693,0.00004163434,0.013071247,0.0010548718,0.00039432937,0.000010329921,0.000014091705,0.012285265],"genre_scores_gemma":[0.99015534,0.00002574866,0.00011082421,0.009285428,0.00017583465,0.000019161964,0.0000045830398,0.000016833712,0.00020624559],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99826556,0.000114310336,0.00062699424,0.00012478154,0.0006645066,0.00020383472],"domain_scores_gemma":[0.9991807,0.000038244925,0.00021163073,0.0001679969,0.00017145462,0.00023000242],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006476489,0.00011644761,0.00042982362,0.0006292446,0.00016890242,0.0000019569795,0.00015065956,0.000027998563,0.00015402627],"category_scores_gemma":[0.00015648174,0.00008260409,0.00009477954,0.00055771833,0.000039755898,0.00004377263,0.000079746635,0.0005868699,0.000007119199],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019839075,0.010659868,0.39988157,0.0002682426,0.0006078396,0.0015549995,0.0038492293,0.0056351116,0.48568603,0.0012053216,0.034539104,0.054128755],"study_design_scores_gemma":[0.0074072634,0.005227775,0.4429182,0.00015853533,0.000097280754,0.0015837414,0.0007621572,0.00004133156,0.000113231,0.000048012553,0.54152155,0.000120894096],"about_ca_topic_score_codex":0.000017724373,"about_ca_topic_score_gemma":9.692648e-7,"teacher_disagreement_score":0.50698245,"about_ca_system_score_codex":0.00031378417,"about_ca_system_score_gemma":0.00005573708,"threshold_uncertainty_score":0.33684972},"labels":[],"label_agreement":null},{"id":"W4313148403","doi":"10.56920/cehh.108","title":"&lt;p&gt;Epidemiological and economic burden of pneumococcal diseases in Canadian children&lt;/p&gt;","year":2011,"lang":"en","type":"article","venue":"Community Ear and Hearing Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Medicine; Epidemiology; Otitis; Vaccination; Streptococcus pneumoniae; Incidence (geometry); Pneumococcal infections; Pediatrics; Cohort; Pneumonia; Meningitis; Pneumococcal conjugate vaccine; Bacteremia; Environmental health; Immunology; Internal medicine; Surgery","score_opus":0.06953139477972824,"score_gpt":0.3176460348705624,"score_spread":0.24811464009083417,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313148403","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958224,0.00089566264,0.0000016596052,0.0013710317,0.000042756415,0.00024098775,0.000030773863,0.000025034464,0.0015696703],"genre_scores_gemma":[0.99829715,0.0010303349,0.000037206908,0.0005361896,0.000049467155,0.000006243827,0.000014754191,0.00000962089,0.000019038425],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988184,0.0003776392,0.00029849258,0.00012779115,0.00003885066,0.00033885633],"domain_scores_gemma":[0.99885106,0.000136788,0.00006122809,0.000286495,0.000015662932,0.0006487804],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00065829215,0.00011293273,0.00042554032,0.0001877804,0.0003658567,0.0000069221096,0.00007416973,0.000101793754,0.000044395943],"category_scores_gemma":[0.000117499585,0.00009790537,0.00004338983,0.00006389981,0.00020654542,0.00004239946,0.000080249716,0.00049038924,0.0000065021777],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020145211,0.00008750489,0.9953719,0.00010417084,0.000016861328,0.0000032342873,0.0012347006,0.0000048672964,0.000413863,0.0009076934,0.00006080269,0.0017742708],"study_design_scores_gemma":[0.000438122,0.00043725054,0.9965741,0.000121468904,0.0000140059055,0.000059026945,0.00009765974,0.00013005073,0.00000635024,0.00020848835,0.0018340149,0.00007946729],"about_ca_topic_score_codex":0.4007429,"about_ca_topic_score_gemma":0.26090187,"teacher_disagreement_score":0.139841,"about_ca_system_score_codex":0.00013629987,"about_ca_system_score_gemma":0.0004504124,"threshold_uncertainty_score":0.75258476},"labels":[],"label_agreement":null},{"id":"W4313312564","doi":"10.7189/jogh.12.04097","title":"Community case management of fast-breathing pneumonia with 3 days oral amoxicillin vs 5 days cotrimoxazole in children 2-59 months of age in rural Pakistan: A cluster randomized trial","year":2022,"lang":"en","type":"article","venue":"Journal of Global Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; SickKids Foundation","funders":"","keywords":"Medicine; Pneumonia; Amoxicillin; Randomized controlled trial; Community-acquired pneumonia; Cluster randomised controlled trial; Pediatrics; Emergency medicine; Surgery; Internal medicine; Antibiotics","score_opus":0.014403575393290602,"score_gpt":0.33013343574854026,"score_spread":0.31572986035524964,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313312564","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960452,0.0002624868,0.00012302156,0.0009967991,0.00021026403,0.0018547995,0.00011295621,0.000009484177,0.0003850142],"genre_scores_gemma":[0.9989485,0.00012630582,0.00031491337,0.0004911932,0.0000498009,0.000027007034,0.000013181934,0.00001452851,0.0000145668555],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.99517435,0.0019599036,0.0017598594,0.0001229109,0.00062694895,0.00035604625],"domain_scores_gemma":[0.9979694,0.000149035,0.001251728,0.00030225288,0.00010893408,0.00021864238],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004257458,0.00021312547,0.0015779648,0.0003006719,0.0002170596,0.000012006333,0.00020151923,0.00006656587,0.000020524893],"category_scores_gemma":[0.000047336285,0.000156193,0.000279932,0.00072632194,0.0001528226,0.0001122399,0.00014353234,0.0010948208,3.5846e-7],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.83457136,0.005445424,0.13891019,0.0006163702,0.0008124848,0.0056312867,0.0034027603,0.0053757834,0.00015270172,0.0003823141,0.0002487366,0.004450572],"study_design_scores_gemma":[0.8629355,0.007914582,0.10940431,0.0009663635,0.00032802654,0.010297776,0.0072754663,0.00040449435,0.000014588507,0.00015075723,0.0001119392,0.00019619416],"about_ca_topic_score_codex":0.007174551,"about_ca_topic_score_gemma":0.0029799975,"teacher_disagreement_score":0.029505877,"about_ca_system_score_codex":0.0013362801,"about_ca_system_score_gemma":0.0006478358,"threshold_uncertainty_score":0.99943674},"labels":[],"label_agreement":null},{"id":"W4313405613","doi":"10.4049/jimmunol.208.supp.105.17","title":"Effects of <i>Mycoplasma pneumoniae</i> CARDS Toxin on mitochondrial homeostasis","year":2022,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Mary's University","funders":"","keywords":"Toxin; Biology; Pneumolysin; Mitochondrion; Cell biology; Microbiology; Virulence; Gene; Biochemistry","score_opus":0.0075261233933944915,"score_gpt":0.24208781238838956,"score_spread":0.23456168899499508,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313405613","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9922955,0.0016869197,0.00002316217,0.002942487,0.0023720954,0.00019995481,0.00000721859,0.000010509387,0.00046213466],"genre_scores_gemma":[0.9983745,0.00044690171,0.000014043267,0.0007094116,0.00020954313,0.000009166844,7.1889906e-7,0.00001584693,0.00021987298],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99854225,0.00049534894,0.00040917916,0.000070567585,0.00029726353,0.00018539361],"domain_scores_gemma":[0.99868584,0.0005136819,0.00039680398,0.00024187722,0.000114983864,0.000046809324],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033772862,0.00011255498,0.0004131676,0.0002395775,0.00021100667,0.0000030048482,0.00022162209,0.00006294298,0.00010480262],"category_scores_gemma":[0.00019166486,0.000071085524,0.00022282523,0.0002494287,0.00014542164,0.000030306821,0.000088818655,0.00078306487,0.0000130313265],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012125565,0.00036876657,0.0005588577,0.00002768499,0.00047253238,0.00012832889,0.00059015164,0.00017629894,0.99170625,0.00008250851,0.001879683,0.0027963528],"study_design_scores_gemma":[0.014600476,0.038294286,0.019135157,0.0002577309,0.0019410198,0.039159156,0.0019605267,0.000017517943,0.6565775,0.00042501267,0.22726986,0.00036170366],"about_ca_topic_score_codex":0.00001265176,"about_ca_topic_score_gemma":0.0000014955513,"teacher_disagreement_score":0.33512872,"about_ca_system_score_codex":0.00011943383,"about_ca_system_score_gemma":0.00020850594,"threshold_uncertainty_score":0.34020707},"labels":[],"label_agreement":null},{"id":"W4313423643","doi":"10.4049/jimmunol.208.supp.105.16","title":"Role of <i>Mycoplasma pneumoniae</i> CARDS toxin in inducing mitochondrial damage and inflammation.","year":2022,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Mary's University","funders":"","keywords":"Toxin; Inflammation; Biology; Mitochondrion; Programmed cell death; Immunology; Microbiology; Cell biology; Apoptosis","score_opus":0.007138064641110001,"score_gpt":0.2340936016845466,"score_spread":0.2269555370434366,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313423643","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960998,0.0008780704,0.0000059809036,0.0021482094,0.00036950683,0.00011174862,0.0000030383685,0.0000041773574,0.00037946808],"genre_scores_gemma":[0.99950963,0.0001665153,0.000024383316,0.00012276463,0.000108316395,0.000004244379,6.417281e-7,0.000007539291,0.000055934863],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99896747,0.00029722563,0.0004190724,0.00005076946,0.00014784628,0.0001176291],"domain_scores_gemma":[0.9993087,0.00014522823,0.00030081003,0.00014533757,0.00007403032,0.00002586991],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004680446,0.00006807274,0.00026214917,0.0002457076,0.00011630708,0.0000034176715,0.00011222253,0.000050119197,0.000055399403],"category_scores_gemma":[0.00011044287,0.000047932685,0.00005525529,0.00020305924,0.000103812934,0.000063567655,0.000098182114,0.00061634165,0.0000013258832],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002456725,0.000053470445,0.010647361,0.0000073491956,0.00008616768,0.000021944228,0.002127832,0.00037291745,0.9846721,0.000073575604,0.000052360338,0.0016392011],"study_design_scores_gemma":[0.022719793,0.013456887,0.41795665,0.0004428616,0.0010681067,0.06351592,0.037722077,0.0006092155,0.31473044,0.0031336134,0.12400981,0.00063464517],"about_ca_topic_score_codex":0.000040983443,"about_ca_topic_score_gemma":0.000021372982,"teacher_disagreement_score":0.6699417,"about_ca_system_score_codex":0.00007073589,"about_ca_system_score_gemma":0.0001706148,"threshold_uncertainty_score":0.2677732},"labels":[],"label_agreement":null},{"id":"W4313437313","doi":"10.1016/j.biopha.2023.114213","title":"Teicoplanin derivatives block spike protein mediated viral entry as pan-SARS-CoV-2 inhibitors","year":2023,"lang":"en","type":"article","venue":"Biomedicine & Pharmacotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Jewish General Hospital","funders":"Shantou Science and Technology Project; National Infrastructure for Microbiological Resources; Chinese Academy of Meteorological Sciences; Chinese Academy of Medical Sciences Initiative for Innovative Medicine; National Natural Science Foundation of China","keywords":"Teicoplanin; Glycopeptide antibiotic; Glycopeptide; Virology; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Chemistry; Biology; Antibiotics; Coronavirus disease 2019 (COVID-19); Medicine; Microbiology; Vancomycin; Staphylococcus aureus; Infectious disease (medical specialty); Disease; Bacteria; Genetics","score_opus":0.027775770148700286,"score_gpt":0.34844324436865404,"score_spread":0.32066747421995373,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313437313","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9826385,0.000495466,0.000017797604,0.0116712,0.0010055472,0.0014380687,0.0000411444,0.0010408931,0.0016514286],"genre_scores_gemma":[0.9844165,0.00078156963,0.000032615837,0.010019711,0.0018799745,0.0002626731,0.00014421943,0.000111290006,0.00235148],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973716,0.00013371749,0.0006170691,0.00054099585,0.00065471337,0.00068188517],"domain_scores_gemma":[0.9989649,0.00010302888,0.00019463258,0.00035669698,0.00012819785,0.0002525581],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00034313757,0.00044869032,0.00058190554,0.00084356964,0.00022428033,0.000027179181,0.00018696442,0.00021339081,0.0002463641],"category_scores_gemma":[0.0000996226,0.00034139564,0.000193129,0.0018116119,0.00037224992,0.00013308742,0.000046304354,0.00046674936,0.0012273384],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023464258,0.00035052618,0.004621976,0.00009591636,0.00026328303,0.0003778933,0.00057304156,4.844982e-7,0.9531619,0.000020910224,0.03502607,0.0052733854],"study_design_scores_gemma":[0.005449939,0.0010179225,0.004697354,0.00023959842,0.00008051281,0.00013152481,0.00014052687,0.00008670595,0.69596124,0.000038385373,0.29186466,0.00029160845],"about_ca_topic_score_codex":0.0000911887,"about_ca_topic_score_gemma":0.000004268573,"teacher_disagreement_score":0.25720063,"about_ca_system_score_codex":0.00011118165,"about_ca_system_score_gemma":0.00028385664,"threshold_uncertainty_score":0.9999038},"labels":[],"label_agreement":null},{"id":"W4313476187","doi":"10.1186/s12877-022-03653-9","title":"Increasing pneumococcal vaccine uptake in older adults: a scoping review of interventions in high-income countries","year":2023,"lang":"en","type":"review","venue":"BMC Geriatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Work & Health; University Health Network; Public Health Ontario; University of Toronto","funders":"University of Toronto","keywords":"Medicine; Psychological intervention; Vaccination; CINAHL; MEDLINE; Family medicine; Systematic review; Health care; Gerontology; Nursing; Immunology","score_opus":0.05365457393798928,"score_gpt":0.3799547737375769,"score_spread":0.32630019979958763,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313476187","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0032849873,0.99153346,0.000025479672,0.00007176971,0.0006092535,0.0042440407,0.00008600307,0.00009932502,0.000045683108],"genre_scores_gemma":[0.00008479122,0.99860936,0.00012769621,0.000058898982,0.0002538448,0.00057163136,0.00014246507,0.00009514013,0.000056144247],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.9951246,0.0005128613,0.0030490842,0.0005320696,0.00034826374,0.00043314428],"domain_scores_gemma":[0.9973133,0.0007483048,0.0010028702,0.0006038489,0.00019417748,0.00013747188],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0017166699,0.000481767,0.00357221,0.0016988461,0.000057386667,0.000022767072,0.00022844879,0.0004370235,0.00013005335],"category_scores_gemma":[0.002089583,0.00040522614,0.0010151522,0.003245868,0.000039597264,0.00009983397,0.00018031608,0.00073004665,0.00009603869],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018205932,0.00019675396,0.0058748573,0.9791844,0.000058116373,0.00008444046,0.000027602506,0.0000014134863,4.2013568e-7,0.00003883622,0.000028713115,0.014486263],"study_design_scores_gemma":[0.001185171,0.00010088591,0.013867885,0.9540372,0.0010741722,0.00017615542,0.00001661763,0.000002969925,1.4275886e-7,0.0000049877494,0.029230356,0.00030347257],"about_ca_topic_score_codex":0.00017647896,"about_ca_topic_score_gemma":0.000870968,"teacher_disagreement_score":0.029201642,"about_ca_system_score_codex":0.00038935192,"about_ca_system_score_gemma":0.00138936,"threshold_uncertainty_score":0.99983996},"labels":[],"label_agreement":null},{"id":"W4313500432","doi":"10.3390/nu15020263","title":"An Isolate of Streptococcus mitis Displayed In Vitro Antimicrobial Activity and Deleterious Effect in a Preclinical Model of Lung Infection","year":2023,"lang":"en","type":"article","venue":"Nutrients","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lallemand (Canada)","funders":"Université Paris-Saclay; Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement; AgroParisTech","keywords":"Streptococcus mitis; Microbiology; Antimicrobial; Staphylococcus aureus; Pseudomonas aeruginosa; Biology; Haemophilus influenzae; In vitro; Streptococcus; Bacteria; Antibiotics","score_opus":0.019795060145644913,"score_gpt":0.3399766609881853,"score_spread":0.3201816008425404,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313500432","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99906594,0.000004329904,0.00010450585,0.000033726385,0.00008989833,0.000611891,0.000039667946,0.00003090263,0.0000191631],"genre_scores_gemma":[0.99983335,0.000050150233,0.000013014935,0.000022734175,0.000016132775,0.000036406647,0.000010581793,0.000011780264,0.000005836129],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99909693,0.00012109318,0.00029509302,0.00021397015,0.000102807535,0.00017013338],"domain_scores_gemma":[0.9995634,0.00007601823,0.00009739758,0.00016441659,0.000031403157,0.00006738428],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023430616,0.00010318191,0.0003621078,0.00031461578,0.000023905754,0.00000439937,0.000030749226,0.00013984868,0.00000162275],"category_scores_gemma":[0.00008092576,0.000093599745,0.00006520662,0.00041948966,0.0000658994,0.000105976214,0.000032359436,0.00019529159,0.0000012358418],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004504359,0.00033639878,0.45836225,0.00014963857,0.000012360107,0.000007532772,0.00010883881,0.00019700683,0.53911674,4.95204e-7,0.0000039106812,0.0012543857],"study_design_scores_gemma":[0.0034701491,0.00065021345,0.7862084,0.00018326308,0.000035774057,0.0000043908394,0.0000020795412,0.07367052,0.13569076,0.000011192932,0.0000036103,0.00006964936],"about_ca_topic_score_codex":0.00018910972,"about_ca_topic_score_gemma":0.0000710271,"teacher_disagreement_score":0.403426,"about_ca_system_score_codex":0.000043847525,"about_ca_system_score_gemma":0.000045653174,"threshold_uncertainty_score":0.38168868},"labels":[],"label_agreement":null},{"id":"W4313544416","doi":"10.1186/s12890-022-02301-7","title":"The burden of lower respiratory infections and their underlying etiologies in the Middle East and North Africa region, 1990–2019: results from the Global Burden of Disease Study 2019","year":2023,"lang":"en","type":"article","venue":"BMC Pulmonary Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Institute for Health Metrics and Evaluation","keywords":"Medicine; Incidence (geometry); Demography; Population; Disease burden; Mortality rate; Etiology; Burden of disease; Environmental health; Surgery; Internal medicine","score_opus":0.1353418618168762,"score_gpt":0.30504661120709264,"score_spread":0.16970474939021643,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313544416","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9837383,0.0037500018,0.000010321174,0.010364265,0.0002543242,0.0010438318,0.00015312334,0.000051334464,0.0006345065],"genre_scores_gemma":[0.99839514,0.0007829915,0.0000012304331,0.0001556903,0.0004058141,0.00006424982,0.00003399019,0.000013455855,0.00014744302],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9979064,0.0005385206,0.0006048104,0.000346598,0.00033768266,0.00026599204],"domain_scores_gemma":[0.9966766,0.002068268,0.00023748398,0.00077314494,0.00012262404,0.00012183769],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010268391,0.00022369728,0.0003867805,0.000103758226,0.0004059766,0.000013548572,0.00025092205,0.00007742412,0.0000036222891],"category_scores_gemma":[0.0013556862,0.000095288786,0.00007580892,0.0009461761,0.0009771955,0.00006831305,0.0001620036,0.00030219698,0.0000036707684],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024536909,0.0007541419,0.9339782,0.00016098638,0.00035398378,0.00029236352,0.04377929,0.0009736011,0.0018728311,0.00020928551,0.011788402,0.0033832167],"study_design_scores_gemma":[0.0016137566,0.0011453601,0.9150426,0.00032383043,0.00019104267,0.00003502267,0.06773617,0.0003280866,6.9284897e-7,0.00057451247,0.012905547,0.00010336716],"about_ca_topic_score_codex":0.0020519684,"about_ca_topic_score_gemma":0.0008004873,"teacher_disagreement_score":0.023956884,"about_ca_system_score_codex":0.00003747341,"about_ca_system_score_gemma":0.00016987094,"threshold_uncertainty_score":0.3885764},"labels":[],"label_agreement":null},{"id":"W4313561875","doi":"10.1016/j.chest.2022.12.035","title":"Guideline-Concordant Antibiotic Therapy for the Hospital Treatment of Community-Acquired Pneumonia and 1-Year All-Cause and Cardiovascular Mortality in Older Adult Patients Surviving to Discharge","year":2023,"lang":"en","type":"article","venue":"CHEST Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; University of Ottawa","funders":"","keywords":"Medicine; Guideline; Community-acquired pneumonia; Pneumonia severity index; Pneumonia; Concordance; Hazard ratio; Internal medicine; Intensive care medicine; Emergency medicine; Confidence interval; Pathology","score_opus":0.04974480525923823,"score_gpt":0.3274224528598206,"score_spread":0.27767764760058233,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313561875","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974297,0.00035759926,0.00007757069,0.0011299275,0.00023823857,0.0007203114,0.000022248245,0.000014745011,0.000009632149],"genre_scores_gemma":[0.99701476,0.0026289497,0.000036662084,0.00015962735,0.000098304095,0.000018887815,0.000010467336,0.000019866759,0.000012479113],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999013,0.0001322557,0.00035237192,0.000115186,0.00017743907,0.00020971194],"domain_scores_gemma":[0.99919724,0.00013634884,0.00008084456,0.00027850614,0.00016834056,0.00013872831],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000597777,0.00014092153,0.00034967234,0.00011085822,0.00024121655,0.000031669857,0.00006332835,0.000049834496,0.0000030741692],"category_scores_gemma":[0.00013812912,0.00008427502,0.00016406333,0.00017131434,0.00007646816,0.00006346184,0.000033691154,0.00012578309,0.0000012249615],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039508443,0.0004646516,0.9836244,0.000055614102,0.0009700078,0.000015506952,0.0033374673,0.000028376238,0.005482134,0.0000043530877,0.000100562516,0.005877393],"study_design_scores_gemma":[0.0036593606,0.001147455,0.9908484,0.00008492307,0.0002441763,0.000034294484,0.0016287392,0.00011115605,0.0006449277,0.000012121309,0.001491179,0.000093234914],"about_ca_topic_score_codex":0.00016355843,"about_ca_topic_score_gemma":0.00007268506,"teacher_disagreement_score":0.0072240075,"about_ca_system_score_codex":0.000047507765,"about_ca_system_score_gemma":0.000045878453,"threshold_uncertainty_score":0.34366357},"labels":[],"label_agreement":null},{"id":"W4313827051","doi":"10.1016/j.chest.2022.09.036","title":"Corticosteroids in Community-Acquired Pneumonia","year":2023,"lang":"en","type":"letter","venue":"CHEST Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Impact; Hamilton Health Sciences","funders":"","keywords":"Medicine; Pneumonia; Intensive care medicine; Community-acquired pneumonia; Internal medicine","score_opus":0.05797719186169716,"score_gpt":0.31207923090627493,"score_spread":0.2541020390445778,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313827051","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.19251883,0.00019526259,0.000019069137,0.80069417,0.0030358783,0.00032312167,0.000021678712,0.0001812806,0.0030107028],"genre_scores_gemma":[0.03343373,0.0007041391,0.00004009437,0.94159883,0.011098456,0.000049898277,0.00017223685,0.00025433255,0.0126482975],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978224,0.0003954531,0.00065718684,0.0001760082,0.00040830683,0.0005406199],"domain_scores_gemma":[0.9986756,0.00022575774,0.00026902382,0.00051372615,0.0001271772,0.00018873664],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00051735644,0.0003160984,0.00064797775,0.00068470044,0.00037015826,0.00010738987,0.00026648605,0.00081066106,0.0001350843],"category_scores_gemma":[0.00023944349,0.00026646542,0.00028451454,0.00042912737,0.0001514318,0.000087107954,0.00008802919,0.008027706,0.00050064287],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023767061,0.00022045858,0.02681896,0.0008400299,0.00022566407,0.017663145,0.000740791,0.0000043309515,0.019983118,8.566888e-7,0.9314601,0.0020188056],"study_design_scores_gemma":[0.0009448227,0.00035977073,0.11644814,0.00085694797,0.00014190235,0.0062220288,0.00012034525,0.0000078610055,0.0000623442,0.000094085735,0.874503,0.00023875592],"about_ca_topic_score_codex":0.000030441495,"about_ca_topic_score_gemma":0.000033779652,"teacher_disagreement_score":0.15908511,"about_ca_system_score_codex":0.000362562,"about_ca_system_score_gemma":0.0003687768,"threshold_uncertainty_score":0.9999788},"labels":[],"label_agreement":null},{"id":"W4315498306","doi":"10.3389/fepid.2022.1031666","title":"Respiratory Diseases' Burden in children and adolescents of marginalized population: A retrospective study in slum area of Karachi, Pakistan","year":2023,"lang":"en","type":"article","venue":"Frontiers in Epidemiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Bronchiolitis; Medicine; Bronchitis; Pneumonia; Asthma; Population; Slum; Pediatrics; Disease burden; Environmental health; Respiratory system; Internal medicine","score_opus":0.02515216834257691,"score_gpt":0.33429896358474015,"score_spread":0.30914679524216326,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4315498306","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978544,0.0005603929,0.00005041336,0.00025660865,0.00022779367,0.0009301502,0.000048175178,0.000024600768,0.000047456797],"genre_scores_gemma":[0.999515,0.00008048296,0.000074621006,0.00017245191,0.000041480514,0.000055172866,0.00003256159,0.00001211475,0.0000161206],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9974562,0.0008744552,0.0009098998,0.000341117,0.00011541544,0.00030290027],"domain_scores_gemma":[0.9992226,0.00010760117,0.0002529809,0.000284854,0.00004223627,0.00008974241],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012290956,0.0001517318,0.0010563103,0.0009898,0.000024284018,0.0000012818431,0.00008518679,0.00016238882,0.0000072255457],"category_scores_gemma":[0.0013387738,0.00013928485,0.000073809344,0.00084470154,0.000183445,0.00006663236,0.00006176225,0.00032230854,0.0000011786265],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003428728,0.00029772572,0.99755687,0.000059911363,0.000053007858,0.000030608117,0.0003562894,0.00014826414,0.000063545136,0.000041112282,0.00039974455,0.0006500695],"study_design_scores_gemma":[0.0037813634,0.00042753288,0.9933622,0.00020375919,0.000044222947,0.0000049117734,0.0006022889,0.0002442724,0.0000013026283,0.0011682769,0.000061029274,0.00009884841],"about_ca_topic_score_codex":0.0010131549,"about_ca_topic_score_gemma":0.0002449364,"teacher_disagreement_score":0.004194658,"about_ca_system_score_codex":0.00018664713,"about_ca_system_score_gemma":0.000059638503,"threshold_uncertainty_score":0.56798714},"labels":[],"label_agreement":null},{"id":"W4317567726","doi":"10.2147/idr.s397513","title":"Bacterial Epidemiology and Antimicrobial Resistance Profiles of Respiratory Specimens of Children with Pneumonia in Hainan, China","year":2023,"lang":"en","type":"article","venue":"Infection and Drug Resistance","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Science Foundation of Hainan Province; National Natural Science Foundation of China","keywords":"Moraxella catarrhalis; Microbiology; Streptococcus pneumoniae; Haemophilus influenzae; Antibiotic resistance; Biology; Acinetobacter baumannii; Pneumonia; Pseudomonas aeruginosa; Antimicrobial; Sputum; Klebsiella pneumoniae; Klebsiella pneumonia; Acinetobacter; Antibiotics; Medicine; Bacteria; Escherichia coli; Internal medicine; Tuberculosis","score_opus":0.014114638254602444,"score_gpt":0.27044153032260304,"score_spread":0.2563268920680006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4317567726","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970008,0.00025121437,0.000017590974,0.00096496084,0.00012090666,0.00039505636,0.000033452627,0.0000618683,0.0011541292],"genre_scores_gemma":[0.99844754,0.00041437254,0.000089048204,0.00011141841,0.000082990184,0.00002171593,0.0000114825925,0.00001829355,0.0008031238],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986493,0.00019090482,0.00048867334,0.00033013927,0.00010163156,0.00023937577],"domain_scores_gemma":[0.99922246,0.00013423183,0.00025978152,0.00022247313,0.00007571428,0.00008532689],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005677129,0.00016446528,0.0005203633,0.00034385626,0.000100804304,0.000005979586,0.000034328186,0.00010929358,0.0000108261665],"category_scores_gemma":[0.00022348725,0.00013521734,0.00005068192,0.0005574623,0.00041588725,0.00008670788,0.000031961128,0.00019350367,0.0000022478696],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046099897,0.00009747719,0.85371065,0.0003581465,0.00004783675,0.000011660631,0.00021208721,0.0000096289095,0.14312993,0.000881328,0.000917656,0.0001625803],"study_design_scores_gemma":[0.0015173334,0.00013835293,0.98332006,0.00044919335,0.000036424535,0.000022988506,0.000016446686,0.0000035440394,0.008843173,0.00011405776,0.005411321,0.00012712162],"about_ca_topic_score_codex":0.000092542585,"about_ca_topic_score_gemma":0.0018202236,"teacher_disagreement_score":0.13428676,"about_ca_system_score_codex":0.00003496744,"about_ca_system_score_gemma":0.00009129658,"threshold_uncertainty_score":0.5514003},"labels":[],"label_agreement":null},{"id":"W4317878675","doi":"10.1370/afm.21.s1.3675","title":"Understanding the Impact of COVID-10 on Antibiotic User in Canada through the use of Electronic Medical Records","year":2023,"lang":"en","type":"article","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Medical prescription; Context (archaeology); Medical record; Logistic regression; Coronavirus disease 2019 (COVID-19); Retrospective cohort study; Pandemic; Pediatrics; Cohort; Cohort study; Population; Emergency medicine; Internal medicine; Disease; Environmental health; Infectious disease (medical specialty); Geography","score_opus":0.14696388471570357,"score_gpt":0.35324308490077305,"score_spread":0.20627920018506948,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4317878675","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9901506,0.000010553775,0.00013529637,0.007505549,0.000094525356,0.00022315848,0.0000072041094,0.000017955712,0.0018551608],"genre_scores_gemma":[0.99833256,0.00009136388,7.921668e-7,0.0010540142,0.000024281837,0.0000016309775,0.0000026794248,0.000008951674,0.00048373692],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989968,0.00009853867,0.00022583742,0.00009781207,0.00033547616,0.00024555912],"domain_scores_gemma":[0.9988657,0.00074244326,0.000059252587,0.00024967612,0.000023889621,0.00005903178],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002616625,0.00008073101,0.00018599382,0.00006828356,0.000065009044,0.000004297672,0.0000899861,0.000052555126,0.00054377574],"category_scores_gemma":[0.0004418665,0.00003449297,0.00008288678,0.00066832814,0.00010648134,0.000033331205,0.000022638875,0.0002660116,0.000005828308],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002975773,0.0003224724,0.8304593,0.00014316347,0.00067514624,0.00014464266,0.0012146063,0.013692217,0.0061258753,0.013549282,0.13297908,0.0003966553],"study_design_scores_gemma":[0.004379548,0.0034515713,0.91750646,0.0007271815,0.00023946425,0.00018433783,0.008059493,0.017974954,0.003088047,0.001453761,0.042512346,0.000422868],"about_ca_topic_score_codex":0.64459574,"about_ca_topic_score_gemma":0.8150916,"teacher_disagreement_score":0.17049584,"about_ca_system_score_codex":0.0009227748,"about_ca_system_score_gemma":0.004089249,"threshold_uncertainty_score":0.7254152},"labels":[],"label_agreement":null},{"id":"W4319457586","doi":"10.1139/cjm-2022-0208","title":"Epidemiology of invasive <i>Haemophilus influenzae</i> disease in northwestern Ontario: comparison of invasive and noninvasive <i>H. influenzae</i> clinical isolates","year":2023,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; NOSM University","funders":"Canadian Immunization Research Network","keywords":"Haemophilus influenzae; Incidence (geometry); Epidemiology; Pasteurellaceae; Serotype; Population; Antibiotic resistance; Biology; Microbiology; Disease; Transmission (telecommunications); Antibiotics; Medicine; Pathology; Environmental health","score_opus":0.05655496169188019,"score_gpt":0.3301929847179807,"score_spread":0.2736380230261005,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4319457586","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962181,0.0017725759,0.000003759353,0.0009935779,0.00050765404,0.0003029596,0.00015072702,0.00000661674,0.000044053293],"genre_scores_gemma":[0.9969328,0.0002793923,0.000049482653,0.0025427744,0.00009444338,0.0000049142127,0.00003797165,0.00002098297,0.000037212412],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99662787,0.0004695808,0.0020532184,0.0002877538,0.000049416747,0.0005121871],"domain_scores_gemma":[0.99529475,0.0019064632,0.0011290575,0.00028079542,0.00047021318,0.00091869175],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008591061,0.0002440377,0.001561479,0.0009159635,0.00007468007,0.0000029139844,0.00021823405,0.0003765389,0.000043187494],"category_scores_gemma":[0.0018017052,0.00021142265,0.00030188123,0.0004329998,0.0010647466,0.00009304733,0.0000606598,0.000825579,0.000016113216],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020069939,0.0000911805,0.9762989,0.00013791666,0.00022983104,0.0005438417,0.001980932,0.0002891103,0.019372154,0.000033573342,0.0007013413,0.000120515615],"study_design_scores_gemma":[0.0025885487,0.0019359309,0.9864147,0.0006605931,0.00023550869,0.0009500142,0.0006107184,0.0000061805554,0.0017228944,0.0002456119,0.0044332035,0.0001961022],"about_ca_topic_score_codex":0.037966676,"about_ca_topic_score_gemma":0.750233,"teacher_disagreement_score":0.7122663,"about_ca_system_score_codex":0.00019096959,"about_ca_system_score_gemma":0.006337252,"threshold_uncertainty_score":0.9992959},"labels":[],"label_agreement":null},{"id":"W4320717319","doi":"10.1016/j.vaccine.2023.02.004","title":"Vaccine effectiveness of the 7-valent and 13-valent pneumococcal conjugate vaccines in Canada: An IMPACT study","year":2023,"lang":"en","type":"letter","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer","keywords":"Medicine; Vaccination; Quantile; Pertussis vaccine; Pregnancy; Pneumococcal conjugate vaccine; Epidemiology; Population; Immunization; Pediatrics; Immunology; Internal medicine; Environmental health; Antigen; Streptococcus pneumoniae; Statistics","score_opus":0.021178163396885732,"score_gpt":0.29559891273177186,"score_spread":0.27442074933488614,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4320717319","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9464321,0.00022377906,5.927347e-7,0.049025964,0.0011170536,0.0029366624,0.00015595846,0.00007013033,0.000037750804],"genre_scores_gemma":[0.9840158,0.000121604666,6.60797e-7,0.0142124435,0.0009905653,0.00020806729,0.00009171054,0.00013741948,0.0002217149],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99615055,0.00087060203,0.0009308153,0.0007924248,0.00060180365,0.0006537726],"domain_scores_gemma":[0.99748826,0.0005574239,0.0003650134,0.0011459503,0.00023318683,0.00021017637],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007371446,0.00068786973,0.0016225065,0.0004995789,0.00014286816,0.000022269776,0.00033832283,0.00039478444,0.00005975575],"category_scores_gemma":[0.00019698124,0.00041913567,0.00025670926,0.0009060303,0.000014677041,0.000089216686,0.0002475567,0.0018942486,0.000008233102],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030149153,0.0004018114,0.95693696,0.0011397835,0.00049711304,0.0009339992,0.00013459187,0.00014861817,0.0063340347,5.638861e-7,0.032979358,0.00019169935],"study_design_scores_gemma":[0.0053180787,0.0015779398,0.9844892,0.0007969369,0.0005948533,0.00022807458,0.00014491506,0.00006908354,0.00048328665,0.000015660858,0.0058951015,0.00038685068],"about_ca_topic_score_codex":0.45289797,"about_ca_topic_score_gemma":0.6610478,"teacher_disagreement_score":0.20814985,"about_ca_system_score_codex":0.0009870566,"about_ca_system_score_gemma":0.0017547733,"threshold_uncertainty_score":0.9998261},"labels":[],"label_agreement":null},{"id":"W4320928966","doi":"10.1016/j.lana.2023.100448","title":"Increase of invasive pneumococcal disease in children temporally associated with RSV outbreak in Quebec: a time-series analysis","year":2023,"lang":"en","type":"article","venue":"The Lancet Regional Health - Americas","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval; Institut National de Santé Publique du Québec; Centre hospitalier de l'Université Laval; Université de Montréal","funders":"Ministère de la Santé; Assistance publique-Hôpitaux de Paris; Fondation de France; European Society for Paediatric Infectious Diseases; Ministère de la Santé et des Services sociaux","keywords":"Incidence (geometry); Poisson regression; Medicine; Outbreak; Pediatrics; Pneumococcal disease; Population; Psychological intervention; Pneumococcal infections; Epidemiology; Disease; Demography; Internal medicine; Streptococcus pneumoniae; Virology; Environmental health; Biology","score_opus":0.0306850039273637,"score_gpt":0.31817000446860755,"score_spread":0.2874850005412439,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4320928966","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96900326,0.00008423057,0.000003342429,0.030021612,0.000011275469,0.0005511467,0.00008593719,0.00008241279,0.00015677646],"genre_scores_gemma":[0.995336,0.0002525919,0.000014521895,0.0032044167,0.000087891836,0.00009473899,0.00034355806,0.000019337052,0.0006469483],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99818134,0.0003676374,0.0004254695,0.00026948948,0.00033636828,0.0004196734],"domain_scores_gemma":[0.9987124,0.00028766994,0.00030358828,0.00037800515,0.000075320015,0.0002430098],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00050327816,0.00017160141,0.0008312779,0.0005126847,0.0000944779,0.00000928013,0.00014075312,0.000051064955,0.000022932103],"category_scores_gemma":[0.00025135642,0.00011074061,0.00013020703,0.003360605,0.00035161752,0.00008219392,0.00004770172,0.00030987698,0.000030498884],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005261081,0.00026208893,0.9963418,0.00004745138,0.00030264634,0.000080862694,0.00049829594,0.00074140704,0.00012846856,0.00006511859,0.00083559175,0.00017011554],"study_design_scores_gemma":[0.0011364698,0.00029697028,0.99715763,0.00024246499,0.00014497062,0.000014879735,0.0001528382,0.00024954972,0.0000035272976,0.000067400804,0.00042175013,0.00011153542],"about_ca_topic_score_codex":0.027064959,"about_ca_topic_score_gemma":0.025106493,"teacher_disagreement_score":0.026817195,"about_ca_system_score_codex":0.00021868215,"about_ca_system_score_gemma":0.0012467665,"threshold_uncertainty_score":0.99268275},"labels":[],"label_agreement":null},{"id":"W4322706595","doi":"10.1542/peds.144.2ma5.466","title":"Burden of Hospitalized Patients with Pneumococcal Pneumonia","year":2019,"lang":"en","type":"article","venue":"PEDIATRICS","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital","funders":"","keywords":"Medicine; Pneumonia; Pneumococcal pneumonia; Intensive care medicine; Pediatrics; Streptococcus pneumoniae; Internal medicine; Antibiotics; Microbiology","score_opus":0.004087637861312679,"score_gpt":0.21780723690052356,"score_spread":0.2137195990392109,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4322706595","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949753,0.000033550237,0.000014201519,0.00020770468,0.00026604853,0.0004735514,0.000016842427,0.0000547267,0.0039580376],"genre_scores_gemma":[0.9991012,0.000032841617,0.000059394708,0.00007744614,0.00018676349,0.0000060291986,0.000018850566,0.000023250044,0.0004941798],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99906,0.000017773156,0.00022292929,0.00018615193,0.00031927947,0.00019389912],"domain_scores_gemma":[0.9992302,0.000043494907,0.00011978355,0.00028557744,0.00022231079,0.00009861891],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000590934,0.00012568633,0.00027353098,0.00015296193,0.000032991033,0.0000068428426,0.0000676685,0.00009041651,0.00011465032],"category_scores_gemma":[0.000049504935,0.00009026142,0.000084086074,0.00037141226,0.000038905022,0.00006420322,0.000029816792,0.00015495738,0.00016833683],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048670438,0.00018405502,0.99359524,0.000118571654,0.000023291343,0.0000045693164,0.000099239645,0.0000393742,0.0056218687,0.000043717235,0.0000554434,0.00016592862],"study_design_scores_gemma":[0.0022011518,0.001017966,0.99039346,0.00001895731,0.00016087043,0.000005826453,0.000024657718,0.000034110897,0.000102381324,0.000017601475,0.0058933906,0.0001296141],"about_ca_topic_score_codex":0.000016004928,"about_ca_topic_score_gemma":5.7089244e-7,"teacher_disagreement_score":0.005837947,"about_ca_system_score_codex":0.000033690212,"about_ca_system_score_gemma":0.00011274724,"threshold_uncertainty_score":0.36807537},"labels":[],"label_agreement":null},{"id":"W4322736681","doi":"10.15690/pf.v20i1.2534","title":"Modern approaches at the management of children with community-acquired pneumonia","year":2023,"lang":"en","type":"article","venue":"Педиатрическая фармакология","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children’s Health Research Institute","funders":"","keywords":"Christian ministry; Community-acquired pneumonia; Pneumonia; Russian federation; Medicine; Etiology; Public health; Political science; Family medicine; Intensive care medicine; Nursing; Business; Pathology; Law","score_opus":0.06108911077516614,"score_gpt":0.2684159771476965,"score_spread":0.20732686637253034,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4322736681","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98234206,0.00011701897,0.00014666619,0.0017751023,0.00009160175,0.00083435175,0.00003461961,0.00029884095,0.014359726],"genre_scores_gemma":[0.9937718,0.00009205545,0.000090802096,0.00035111938,0.00006569449,0.00013800272,0.00013232333,0.000056222107,0.0053019817],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984059,0.0001655163,0.00032097456,0.00026962155,0.0004376945,0.0004003323],"domain_scores_gemma":[0.9984829,0.0000706988,0.00013616121,0.0011185511,0.000058738944,0.00013294748],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041341846,0.0002545151,0.00036055545,0.00016792033,0.00063702813,0.000020574502,0.00029010256,0.00010077495,0.00005290794],"category_scores_gemma":[0.0000070442893,0.00015472919,0.00015655188,0.0008163784,0.00037521933,0.000068348534,0.00031701065,0.0003127151,0.00022186615],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009671325,0.0031014003,0.771243,0.002332166,0.008676172,0.00031768045,0.010248403,0.0049065603,0.10862833,0.003935897,0.005565186,0.08007808],"study_design_scores_gemma":[0.0022142953,0.0005884762,0.98400253,0.00033136486,0.0006553767,0.0002960404,0.001372758,0.0009072712,0.00418439,0.00026142513,0.004858925,0.00032717528],"about_ca_topic_score_codex":0.000066392415,"about_ca_topic_score_gemma":0.00007608785,"teacher_disagreement_score":0.21275951,"about_ca_system_score_codex":0.00007886459,"about_ca_system_score_gemma":0.000048562706,"threshold_uncertainty_score":0.6309673},"labels":[],"label_agreement":null},{"id":"W4323036473","doi":"10.1007/s40121-023-00780-7","title":"Reanalysis of the Clinical and Economic Burden of Pneumococcal Disease Due to Serotypes Contained in Current and Investigational Pneumococcal Conjugate Vaccines in Children &lt; 5 Age: A Societal Perspective","year":2023,"lang":"en","type":"article","venue":"Infectious Diseases and Therapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Pfizer","keywords":"Medicine; Pneumococcal disease; Pneumococcal conjugate vaccine; Disease burden; Economic cost; Indirect costs; Economic impact analysis; Environmental health; Burden of disease; Serotype; Disease; Pediatrics; Demography; Streptococcus pneumoniae; Virology; Population; Internal medicine; Business; Biology","score_opus":0.018200740816143444,"score_gpt":0.323275831663058,"score_spread":0.3050750908469146,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4323036473","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964866,0.0010477991,0.0000011446432,0.0015428243,0.00007636703,0.0007035268,0.00009850003,0.000025284451,0.000017940332],"genre_scores_gemma":[0.99786687,0.0018042814,9.281229e-7,0.00012504522,0.00011418363,0.00005534532,0.000012001566,0.00001284434,0.000008471921],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99887985,0.00015206875,0.00040624515,0.00030734073,0.00010224332,0.0001522239],"domain_scores_gemma":[0.99926823,0.00016434705,0.00010700459,0.00016059059,0.00006303173,0.00023676315],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018984472,0.00015543606,0.00044721994,0.00022401148,0.000072006565,0.000018552686,0.000047268666,0.00005728279,0.000010576373],"category_scores_gemma":[0.00015153782,0.0001121668,0.00014960808,0.0003212042,0.00033265285,0.000062544255,0.00006745295,0.00015525828,0.0000013498201],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017977122,0.00019780162,0.99456716,0.000035083787,0.00017789389,0.000008779669,0.00040292108,0.00017877376,0.0021817465,0.00050172576,0.000009658467,0.0015586902],"study_design_scores_gemma":[0.0026652713,0.0002600262,0.99297535,0.00008751598,0.000120628545,0.000014915913,0.00014339523,0.0004913517,0.00002468961,0.003043305,0.000063321335,0.00011023539],"about_ca_topic_score_codex":0.00042229102,"about_ca_topic_score_gemma":0.00022377381,"teacher_disagreement_score":0.002541579,"about_ca_system_score_codex":0.00004085595,"about_ca_system_score_gemma":0.00020258126,"threshold_uncertainty_score":0.45740294},"labels":[],"label_agreement":null},{"id":"W4323036645","doi":"10.1080/21645515.2023.2177066","title":"Phase 3 trial to evaluate the safety, tolerability, and immunogenicity of V114, a 15-valent pneumococcal conjugate vaccine, followed by 23-valent pneumococcal polysaccharide vaccine 6 months later, in at-risk adults 18–49 years of age (PNEU-DAY): A subgroup analysis by baseline risk factors","year":2023,"lang":"en","type":"article","venue":"Human Vaccines & Immunotherapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Immunogenicity; Pneumococcal conjugate vaccine; Tolerability; Medicine; Pneumococcal vaccine; Pneumococcal polysaccharide vaccine; Immunology; Pneumococcal disease; Streptococcus pneumoniae; Virology; Adverse effect; Internal medicine; Microbiology; Antigen; Biology; Antibiotics","score_opus":0.022274983777616345,"score_gpt":0.3186826281464151,"score_spread":0.2964076443687988,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4323036645","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99210733,0.0017575291,0.00006145388,0.000423138,0.00037382165,0.003622228,0.0014694444,0.00016774943,0.000017321141],"genre_scores_gemma":[0.9954311,0.0031655638,0.000010650412,0.00018963295,0.00011300875,0.00021521152,0.00046690114,0.00013606384,0.0002718252],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99264634,0.0013737024,0.0030354597,0.0011061206,0.0008742231,0.00096414314],"domain_scores_gemma":[0.99559283,0.00096068165,0.0010461917,0.0016865807,0.0003706782,0.00034304018],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0030828046,0.00087353506,0.0023513278,0.0010520555,0.00048417327,0.000061744,0.000625724,0.00040104083,0.00031322727],"category_scores_gemma":[0.00041672395,0.00068533473,0.0011176388,0.00260838,0.00012889721,0.00015808766,0.00042617274,0.0009057364,0.000026276693],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.026336834,0.003023747,0.28373948,0.0001351549,0.0030765554,0.00002767875,0.002397038,0.00032649172,0.6785033,0.0000031637142,0.00036623454,0.002064378],"study_design_scores_gemma":[0.10657954,0.0060036853,0.8452005,0.00021036336,0.0058755423,0.000014998912,0.00042949984,0.002813302,0.029087076,0.000047537214,0.002853097,0.00088487426],"about_ca_topic_score_codex":0.0025193666,"about_ca_topic_score_gemma":0.0023705668,"teacher_disagreement_score":0.6494162,"about_ca_system_score_codex":0.00031828816,"about_ca_system_score_gemma":0.000128967,"threshold_uncertainty_score":0.99955976},"labels":[],"label_agreement":null},{"id":"W4323066518","doi":"10.1186/s41479-023-00110-y","title":"Acute organ injury and long-term sequelae of severe pneumococcal infections","year":2023,"lang":"en","type":"review","venue":"Pneumonia","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Medicine; Intensive care medicine; Term (time)","score_opus":0.05031013844914072,"score_gpt":0.37766242496349234,"score_spread":0.3273522865143516,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4323066518","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.039320968,0.9529239,0.000012381826,0.00037283258,0.0015394203,0.0030802467,0.0008112984,0.0008651815,0.0010737953],"genre_scores_gemma":[0.0011263348,0.9962423,0.0000067498318,0.00008394494,0.00034039762,0.00022735559,0.00017156263,0.00018878725,0.0016126091],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9973863,0.00015623526,0.0010067559,0.0006542832,0.00031339054,0.00048306145],"domain_scores_gemma":[0.99797446,0.00027135617,0.0004672336,0.00074571394,0.00015822244,0.00038300763],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00020148061,0.00065226905,0.0023923411,0.00079565914,0.00022847789,0.000043770302,0.00018348872,0.00071324053,0.000093935254],"category_scores_gemma":[0.00016663177,0.000522998,0.00069569226,0.0012169027,0.000272564,0.00011100324,0.00025219703,0.0010841636,0.00041534417],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003217029,0.0010558859,0.0326046,0.10100989,0.006894135,0.0012322095,0.0002532508,9.545191e-7,0.008593379,0.00022046348,0.00089090585,0.84721214],"study_design_scores_gemma":[0.00071409123,0.0011538016,0.032447014,0.023819784,0.011265519,0.007314006,0.000013925695,0.0000017949545,0.00003055246,0.000055697517,0.922118,0.0010657794],"about_ca_topic_score_codex":0.000015564543,"about_ca_topic_score_gemma":0.000034230496,"teacher_disagreement_score":0.92122716,"about_ca_system_score_codex":0.00018204912,"about_ca_system_score_gemma":0.0007299511,"threshold_uncertainty_score":0.9997222},"labels":[],"label_agreement":null},{"id":"W4323339041","doi":"10.21037/tp-22-247","title":"Direct costs of community-acquired pneumonia for hospitalized children in Shanghai, China from 2018 to 2020: a cross-sectional analysis","year":2023,"lang":"en","type":"article","venue":"Translational Pediatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital","funders":"National Key Research and Development Program of China; Science and Technology Commission of Shanghai Municipality","keywords":"Medicine; Cross-sectional study; Pneumonia; China; Pediatrics; Environmental health; Intensive care medicine; Internal medicine; Pathology; Geography","score_opus":0.02475110978925798,"score_gpt":0.3241884795471705,"score_spread":0.2994373697579125,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4323339041","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99454916,0.00007330829,0.000778411,0.0009835107,0.00018736889,0.00072131335,0.0022636862,0.00010768271,0.00033555212],"genre_scores_gemma":[0.9967879,0.000053740965,0.00026100324,0.00019046538,0.00033856387,0.000107452004,0.0020970001,0.000026449803,0.00013744723],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984577,0.00008173677,0.0005510345,0.00024140479,0.0004124627,0.00025572052],"domain_scores_gemma":[0.9989007,0.00042282214,0.000113235896,0.00023647188,0.00017380809,0.00015292584],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047376662,0.00017633243,0.00044245832,0.0008872463,0.00021414878,0.00002632725,0.00014224729,0.00016532684,0.00011104973],"category_scores_gemma":[0.00015903797,0.00017596666,0.00038003156,0.0032910022,0.00006345758,0.00009856545,0.000025267942,0.00018028803,0.000032193504],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017784757,0.0002534524,0.99032634,0.00002731548,0.00031494172,0.000001987622,0.00045176788,0.0049620857,0.0028631461,0.000049424885,0.00044166791,0.00013003747],"study_design_scores_gemma":[0.0018021266,0.00019109392,0.9958944,0.000008744889,0.00044881355,0.0000021660542,0.0000145109025,0.00090819737,0.00006975586,0.00029232126,0.00020602433,0.00016190214],"about_ca_topic_score_codex":0.0006893885,"about_ca_topic_score_gemma":0.00037699775,"teacher_disagreement_score":0.005568018,"about_ca_system_score_codex":0.00008229164,"about_ca_system_score_gemma":0.00012904363,"threshold_uncertainty_score":0.71757126},"labels":[],"label_agreement":null},{"id":"W4323546357","doi":"10.14745/ccdr.v49i23a08","title":"Summary of the NACI Statement on Public Health Level Recommendations on the Use of Pneumococcal Vaccines in Adults, Including the Use of 15-valent and 20-valent Conjugate Vaccines","year":2023,"lang":"en","type":"article","venue":"Canada Communicable Disease Report","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"University of British Columbia; Public Health Agency of Canada","funders":"Health Canada; Centers for Disease Control and Prevention; Canadian Armed Forces; Association des pharmaciens du Canada; Association of Medical Microbiology and Infectious Disease Canada; Indigenous Services Canada; Public Health Agency; Public Health Agency of Canada","keywords":"Medicine; Pneumococcal conjugate vaccine; Immunization; Family medicine; Pediatrics; Immunology; Streptococcus pneumoniae; Immune system","score_opus":0.25468084360785354,"score_gpt":0.3422904178628685,"score_spread":0.08760957425501498,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4323546357","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9164063,0.00023406249,0.0000015448484,0.08155392,0.00019055224,0.0010615587,0.000479145,0.000017145854,0.000055766108],"genre_scores_gemma":[0.99545497,0.0019464295,0.0000100858815,0.0019886363,0.00001550807,0.000111394795,0.00012935407,0.000021753882,0.00032184494],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99736387,0.00060457404,0.0010669811,0.00021362235,0.00045527535,0.00029567184],"domain_scores_gemma":[0.99607795,0.0011224854,0.00067814207,0.001632643,0.00026438403,0.00022438174],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009264881,0.00018667673,0.00042341594,0.00015843182,0.00042251224,0.000019484354,0.0002728515,0.000036288307,0.000020823276],"category_scores_gemma":[0.0011863086,0.000101515456,0.000118737844,0.0006259859,0.00012374019,0.00010334542,0.00037230624,0.00034891636,3.08894e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032033134,0.0010078442,0.892267,0.00085878145,0.0004035247,0.00011934792,0.0006927293,0.0030575236,0.0010093859,0.00054769695,0.09746353,0.002252288],"study_design_scores_gemma":[0.0008332948,0.00016108638,0.78075707,0.0015142824,0.00008375566,0.000025044927,0.0009416071,0.0010937768,0.00021115453,0.000023934324,0.21422835,0.0001266622],"about_ca_topic_score_codex":0.07422686,"about_ca_topic_score_gemma":0.22247963,"teacher_disagreement_score":0.14825277,"about_ca_system_score_codex":0.0003016312,"about_ca_system_score_gemma":0.0023411794,"threshold_uncertainty_score":0.93193793},"labels":[],"label_agreement":null},{"id":"W4323644799","doi":"10.46747/cfp.6509625","title":"Vaccine strategies for prevention of community-acquired pneumonia in Canada","year":2019,"lang":"en","type":"article","venue":"Canadian Family Physician","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"University of Manitoba; Jewish General Hospital; Cégep de l'Outaouais; Hôpital Saint-Luc; McGill University; McGill University Health Centre; McMaster University; Pfizer (Canada); Memorial University of Newfoundland; College of Family Physicians of Canada; University of Calgary; Université de Sherbrooke; University of Toronto","funders":"Pfizer Canada; Sanofi Pasteur; Seqirus; Grifols; H. Lundbeck A/S; Astellas Pharma; Novo Nordisk; Teva Pharmaceutical Industries; Medicines Company; Zoetis; Sunovion; Purdue University; Bayer HealthCare; Sanofi; AstraZeneca; McMaster University; Amgen; Pfizer; GlaxoSmithKline","keywords":"Medicine; Pneumococcal polysaccharide vaccine; Vaccination; Pneumococcal disease; Pneumococcal conjugate vaccine; Population; Immunization; Advisory committee; Pneumonia; Pneumococcal pneumonia; Pneumococcal vaccine; Community-acquired pneumonia; Pediatrics; Family medicine; Immunology; Streptococcus pneumoniae; Environmental health; Internal medicine; Antigen","score_opus":0.022313870435478632,"score_gpt":0.2586411258623342,"score_spread":0.23632725542685554,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4323644799","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98292947,0.00005675212,0.000015031101,0.00044018618,0.00022632135,0.0006107546,0.00007712088,0.0000097841785,0.01563461],"genre_scores_gemma":[0.9876296,0.0000034112759,0.000010123951,0.0120704835,0.000041895713,0.00003443285,0.000058836344,0.000018775556,0.0001324512],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99923635,0.00005596219,0.00022992882,0.00010106969,0.00009387878,0.00028281217],"domain_scores_gemma":[0.9992925,0.000046776888,0.0000715562,0.0003186538,0.00008939239,0.00018114834],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000079612524,0.00011611043,0.00029955085,0.00017778798,0.00007995181,0.000008482234,0.000096379445,0.000050952713,0.000004492668],"category_scores_gemma":[0.0000065347344,0.00011884068,0.000070567745,0.00026562103,0.000016952348,0.0000939641,0.000008399679,0.00014352043,0.000007682567],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000105649684,0.00030912703,0.053999837,0.0008884133,0.00022927167,0.000027818245,0.00067498756,0.000984207,0.8972263,0.0024983226,0.006521656,0.03653441],"study_design_scores_gemma":[0.0023441417,0.00065855554,0.9342002,0.0003108492,0.00007212539,0.0000024226424,0.010461696,0.00033391351,0.001915353,0.0012525867,0.04816453,0.00028358013],"about_ca_topic_score_codex":0.95489097,"about_ca_topic_score_gemma":0.99612176,"teacher_disagreement_score":0.89531094,"about_ca_system_score_codex":0.00067184854,"about_ca_system_score_gemma":0.005012434,"threshold_uncertainty_score":0.8891843},"labels":[],"label_agreement":null},{"id":"W4327549448","doi":"10.1161/circresaha.122.321636","title":"Pneumonia-Induced Inflammation, Resolution and Cardiovascular Disease: Causes, Consequences and Clinical Opportunities","year":2023,"lang":"en","type":"review","venue":"Circulation Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; Institute of Infection and Immunity; University of Ottawa","funders":"","keywords":"Pneumonia; Medicine; Intensive care medicine; Disease; Myocardial infarction; Inflammation; Immunology; Adverse effect; Coronary artery disease; Internal medicine","score_opus":0.6008616488487561,"score_gpt":0.5103370275635896,"score_spread":0.09052462128516658,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4327549448","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0062096897,0.9900787,0.000011564147,0.0010239534,0.00023310899,0.0019192027,0.0000447475,0.00016625375,0.0003127636],"genre_scores_gemma":[0.0056147506,0.9928847,0.000003656861,0.000018469085,0.0005702728,0.00025961048,0.00018172778,0.00005818976,0.00040861417],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99560326,0.0015189875,0.0008785973,0.00067578506,0.00094091945,0.00038247497],"domain_scores_gemma":[0.9973087,0.0007699446,0.00015143056,0.0006725431,0.00054189423,0.0005555426],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0036040405,0.0002715332,0.00118575,0.0008824131,0.0005611206,0.00015351904,0.000091783055,0.00045424263,0.000019825458],"category_scores_gemma":[0.0017526507,0.00022837197,0.0004523822,0.00069461804,0.0010232051,0.00015601442,0.00013742707,0.00094694534,0.00007360494],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015739397,0.000060672566,0.0053575165,0.024924695,0.002529104,0.0007116892,0.00007338429,0.000018741777,0.000038153135,0.001684486,0.00040080195,0.964185],"study_design_scores_gemma":[0.00037290665,0.00010621306,0.027824016,0.0077363933,0.0019847744,0.00026858476,0.00012561434,0.0002509196,2.9986725e-7,0.0003276527,0.96069914,0.00030347132],"about_ca_topic_score_codex":0.00010151717,"about_ca_topic_score_gemma":0.000020675941,"teacher_disagreement_score":0.96388155,"about_ca_system_score_codex":0.00014130468,"about_ca_system_score_gemma":0.0017620652,"threshold_uncertainty_score":0.9312738},"labels":[],"label_agreement":null},{"id":"W4361192109","doi":"10.3390/vaccines11040748","title":"Burden of Acute-Care Hospitalization for Community-Acquired Pneumonia in Canadian Adults Aged 50 Years or Older: Focusing on Most Responsible Diagnosis Tells Only Part of the Story","year":2023,"lang":"en","type":"article","venue":"Vaccines","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer Canada; Pfizer","keywords":"Medicine; Pneumonia; Incidence (geometry); Community-acquired pneumonia; Diagnosis code; Comorbidity; Reimbursement; Pneumococcal pneumonia; Retrospective cohort study; Mortality rate; Health care; Pediatrics; Intensive care medicine; Emergency medicine; Internal medicine; Population; Environmental health; Streptococcus pneumoniae","score_opus":0.020701780476885766,"score_gpt":0.28554975226052315,"score_spread":0.2648479717836374,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4361192109","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996233,0.00006060919,7.8665363e-7,0.0021673876,0.00031779837,0.00088900584,0.00021049444,0.000039578114,0.00008137055],"genre_scores_gemma":[0.9990341,0.0001402652,0.000011998499,0.00022046399,0.00007893984,0.00009614199,0.00006447779,0.00003117796,0.0003224093],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99899095,0.00020444898,0.00028288004,0.00013859542,0.00014012626,0.00024301796],"domain_scores_gemma":[0.99881643,0.00037755733,0.00012531364,0.0004269741,0.00015873807,0.0000949981],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027442994,0.00012414381,0.00027514086,0.00047010562,0.00022078263,0.000008293506,0.00014764062,0.00011416918,0.000024696255],"category_scores_gemma":[0.0004900647,0.00009149845,0.00009344317,0.0009629465,0.00003556673,0.000055817563,0.000038528702,0.00014888469,0.0000047637386],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00085892115,0.00028762603,0.9153601,0.0008057028,0.00023924738,0.00003982213,0.01877946,0.00073386246,0.044808928,0.000052847117,0.008219438,0.00981407],"study_design_scores_gemma":[0.0016060584,0.000645347,0.9718235,0.0011376974,0.00012519267,0.0000055400346,0.0032292705,0.00008116439,0.0077371006,0.000011519218,0.013476935,0.0001206441],"about_ca_topic_score_codex":0.03194836,"about_ca_topic_score_gemma":0.21836798,"teacher_disagreement_score":0.18641962,"about_ca_system_score_codex":0.00013572552,"about_ca_system_score_gemma":0.00064584747,"threshold_uncertainty_score":0.974498},"labels":[],"label_agreement":null},{"id":"W4361757264","doi":"10.2196/45712","title":"Duration of Protection From Pneumonia After Pneumococcal Vaccination in Hemodialysis Patients (DOPPIO): Protocol for a Prospective Multicenter Study","year":2023,"lang":"en","type":"article","venue":"JMIR Research Protocols","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Vaccination; Pneumonia; Guideline; Pneumococcal pneumonia; Antibody titer; Hemodialysis; Dialysis; Intensive care medicine; Internal medicine; Pediatrics; Streptococcus pneumoniae; Immunology; Titer; Antibody","score_opus":0.17515067615118374,"score_gpt":0.5204481881319036,"score_spread":0.3452975119807199,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4361757264","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3275926,3.8118248e-8,0.000034172797,0.00028109897,0.000007701283,0.6719269,0.000027391126,0.000079759084,0.000050298935],"genre_scores_gemma":[0.3627742,2.7023885e-8,0.000022332983,0.00001235137,0.000082454026,0.6369265,0.000019972815,0.000030677813,0.00013150933],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9964989,0.0005888411,0.0008050726,0.0006392087,0.00094810984,0.00051990565],"domain_scores_gemma":[0.99773,0.00017985057,0.00021225373,0.00046475028,0.0012755129,0.00013763379],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012646144,0.00022355314,0.00042016892,0.0011225198,0.00019767595,0.000067764784,0.00014189012,0.00019256989,0.00009317406],"category_scores_gemma":[0.00060811004,0.00018478413,0.00015224921,0.0018381103,0.00006318633,0.00033293015,0.000122379,0.00055591215,0.0000692639],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0066501563,0.009198489,0.8819915,0.0009484766,0.00007554241,0.000018784098,0.0018754484,0.000015732065,0.09454559,0.000005102371,0.00016932466,0.004505843],"study_design_scores_gemma":[0.015976429,0.005841319,0.9610985,0.00084519706,0.000010276214,4.9982754e-7,0.00029158953,0.0012468846,0.00930818,0.00017760013,0.0050441404,0.00015940992],"about_ca_topic_score_codex":0.00008780077,"about_ca_topic_score_gemma":0.00022216543,"teacher_disagreement_score":0.085237406,"about_ca_system_score_codex":0.0004598638,"about_ca_system_score_gemma":0.00022170447,"threshold_uncertainty_score":0.7535278},"labels":[],"label_agreement":null},{"id":"W4362521337","doi":"10.1007/s00134-023-07033-8","title":"ERS/ESICM/ESCMID/ALAT guidelines for the management of severe community-acquired pneumonia","year":2023,"lang":"en","type":"article","venue":"Intensive Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":285,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"European Society of Intensive Care Medicine; Shionogi; ZonMw; Pfizer; European Respiratory Society; McMaster University; European Society of Clinical Microbiology and Infectious Diseases; Nabriva Therapeutics","keywords":"Medicine; Community-acquired pneumonia; Anesthesiology; Pain medicine; Pneumonia; Intensive care medicine; Internal medicine; Pathology","score_opus":0.12303548164062435,"score_gpt":0.3908387087952975,"score_spread":0.26780322715467314,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4362521337","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.74966794,0.0039930185,0.0009847733,0.22930387,0.0049373163,0.004201639,0.00016859181,0.0006286535,0.006114208],"genre_scores_gemma":[0.9740023,0.00086218567,0.000100877434,0.021188516,0.00057224894,0.0002227496,0.00016927364,0.000056413715,0.0028254064],"study_design_codex":"not_applicable","study_design_gemma":"qualitative","domain_scores_codex":[0.99844545,0.000076154065,0.00057023414,0.00021352427,0.0003774561,0.00031717186],"domain_scores_gemma":[0.99137414,0.00055813947,0.00016130718,0.0007601675,0.0070211473,0.00012509248],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045008157,0.00023844115,0.0005483335,0.00022863047,0.0003708775,0.0000059392564,0.0002428159,0.000101475394,0.000056053148],"category_scores_gemma":[0.0014929604,0.00013824088,0.00020689177,0.0006586227,0.0004577112,0.00003484578,0.00014679255,0.00025217762,0.000039592076],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009160304,0.00016451602,0.021769824,0.0069632544,0.0047138254,0.0006914631,0.034182727,0.00057787274,0.26211357,0.0015766937,0.58539826,0.080931984],"study_design_scores_gemma":[0.006701426,0.0025467775,0.12781619,0.004697885,0.0025185053,0.00031764686,0.4665976,0.00060179346,0.0023441901,0.00038726773,0.38506433,0.00040640644],"about_ca_topic_score_codex":0.00015154398,"about_ca_topic_score_gemma":0.000037967773,"teacher_disagreement_score":0.43241486,"about_ca_system_score_codex":0.00008368948,"about_ca_system_score_gemma":0.00005786059,"threshold_uncertainty_score":0.56372994},"labels":[],"label_agreement":null},{"id":"W4362522951","doi":"10.1183/13993003.00735-2022","title":"ERS/ESICM/ESCMID/ALAT guidelines for the management of severe community-acquired pneumonia","year":2023,"lang":"en","type":"article","venue":"European Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":139,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"FP7 Health; MSD Italia; Grifols; Lung Foundation Netherlands; European Society of Clinical Microbiology and Infectious Diseases; Shionogi; European Society of Intensive Care Medicine; Vlaamse regering; ZonMw; Nabriva Therapeutics; Koninklijke Nederlandse Akademie van Wetenschappen; Insmed; European Commission; Australian College of Critical Care Nurses; McMaster University; Gilead Sciences; Amsterdam University Medical Centers; Cidara Therapeutics; AstraZeneca; CSL Behring; GlaxoSmithKline; Horizon 2020 Framework Programme; European Respiratory Society; Pfizer","keywords":"Medicine; Community-acquired pneumonia; Pneumonia; Intensive care medicine; Internal medicine","score_opus":0.16925917943700425,"score_gpt":0.37487738028370454,"score_spread":0.2056182008467003,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4362522951","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9688026,0.0010289411,0.00090289145,0.007318918,0.0018011504,0.0011650295,0.00004767017,0.00033055435,0.018602274],"genre_scores_gemma":[0.97707474,0.0009825481,0.0007338725,0.01135483,0.0021891454,0.00005334746,0.000016439428,0.00023680899,0.0073582376],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99752873,0.00061885006,0.0008481837,0.00017974166,0.00043029903,0.0003942088],"domain_scores_gemma":[0.9978535,0.00023728996,0.00034734863,0.00071236567,0.0006319064,0.00021755381],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0032892195,0.0002373328,0.0003329969,0.00027566732,0.0012265409,0.00006719054,0.00045910894,0.00005406881,0.00007504765],"category_scores_gemma":[0.00022333533,0.00015488129,0.0003649526,0.0005667025,0.0001856697,0.00010632882,0.00019840014,0.0005241084,0.00019771775],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010548737,0.0010625295,0.043796025,0.0022771477,0.0054318784,0.0031890252,0.0034951498,0.0055950033,0.3525295,0.0013148524,0.3819918,0.1982622],"study_design_scores_gemma":[0.0026639653,0.0007307437,0.22373359,0.0005772593,0.00046222267,0.0004771569,0.0024738358,0.0001304583,0.00050945044,0.00009183609,0.7679095,0.0002399771],"about_ca_topic_score_codex":0.0000020353255,"about_ca_topic_score_gemma":0.0000023659647,"teacher_disagreement_score":0.3859177,"about_ca_system_score_codex":0.00006331021,"about_ca_system_score_gemma":0.00009786397,"threshold_uncertainty_score":0.94336843},"labels":[],"label_agreement":null},{"id":"W4362587332","doi":"10.1101/2023.03.30.23287917","title":"Trends in serotype distribution and disease severity in adults hospitalised with <i>Streptococcus pneumoniae</i> infection in Bristol and Bath: a retrospective cohort study, 2006-2022","year":2023,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Ottawa Mental Health Centre","funders":"Department of Health and Social Care; National Institute for Health and Care Research","keywords":"Serotype; Medicine; Streptococcus pneumoniae; Pneumococcal disease; Retrospective cohort study; Cohort; Pandemic; Disease; Pediatrics; Vaccination; Coronavirus disease 2019 (COVID-19); Virology; Internal medicine; Infectious disease (medical specialty); Biology; Microbiology; Antibiotics","score_opus":0.010392040852049311,"score_gpt":0.26477076325759896,"score_spread":0.25437872240554965,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4362587332","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957239,0.00009438963,0.000008595664,0.00063560315,0.00026800652,0.0026767903,0.00039033862,0.00013789322,0.000064455206],"genre_scores_gemma":[0.9977214,0.0003097365,0.0000013114312,0.0000416002,0.000067241504,0.0012911429,0.0004217124,0.00004786521,0.00009801516],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9972982,0.00026489288,0.0005562636,0.0011076081,0.00039785614,0.00037518443],"domain_scores_gemma":[0.9988205,0.000048257036,0.00020740453,0.0005048663,0.00011270433,0.00030629273],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006194039,0.0004343313,0.000817638,0.00074482046,0.00008560623,0.00004525357,0.000072118,0.0002841072,0.000012063115],"category_scores_gemma":[0.00031014197,0.00039710183,0.000076207194,0.0013118396,0.00015773026,0.0001281923,0.00024990443,0.0013145965,0.0000032217122],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003689654,0.0009224296,0.99655116,0.00025959054,0.0000627262,0.00076284,0.0005080583,0.000085749394,0.00006788351,0.0000035883263,0.00004761525,0.00035938702],"study_design_scores_gemma":[0.0031632786,0.0005714664,0.99400604,0.0009435004,0.00014295292,0.000015673158,0.00009422931,0.0005416951,0.000007387868,0.00008467493,0.00005255937,0.0003765381],"about_ca_topic_score_codex":0.0040498343,"about_ca_topic_score_gemma":0.02522455,"teacher_disagreement_score":0.021174716,"about_ca_system_score_codex":0.0007100788,"about_ca_system_score_gemma":0.00021144732,"threshold_uncertainty_score":0.99984807},"labels":[],"label_agreement":null},{"id":"W4362672024","doi":"10.1101/2023.04.05.534641","title":"Therapeutic immunization with a whole cell vaccine reduces pneumococcal nasopharyngeal density, shedding, and middle ear infection in mice","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Infection and Immunity; National Health and Medical Research Council; Pfizer; State Government of Victoria; Murdoch Children's Research Institute; University of Melbourne; Medical Research Council; Children’s Hospital of Wisconsin Research Institute","keywords":"Streptococcus pneumoniae; Carriage; Vaccination; Medicine; Immunology; Pneumococcal conjugate vaccine; Pneumococcal infections; Serotype; Immune system; Immunization; Antibody; Virology; Microbiology; Biology; Antibiotics","score_opus":0.01924522338544444,"score_gpt":0.23907352769470203,"score_spread":0.2198283043092576,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4362672024","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99632025,0.00059586356,0.0001951525,0.00061755895,0.00063457765,0.0010901507,0.000028975533,0.00050529814,0.000012197208],"genre_scores_gemma":[0.99812347,0.0007577687,0.00019655623,0.00020166831,0.0003279966,0.00019312452,0.000001978122,0.00016654859,0.000030908235],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99761754,0.00017298208,0.00051987433,0.0008905017,0.00031715093,0.0004819444],"domain_scores_gemma":[0.9983503,0.00007130996,0.00031681717,0.0006314009,0.000381894,0.00024828227],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00044132702,0.0005311449,0.00068585936,0.0007452608,0.00023189154,0.00015434313,0.0001519946,0.0005666764,0.000014612594],"category_scores_gemma":[0.000079212805,0.0004948997,0.000101823774,0.0009957635,0.00009873739,0.00018649199,0.00028642325,0.0011600285,0.000056405424],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007380431,0.00025090636,0.26911977,0.0005806277,0.000113313414,0.000099397985,0.000034947363,0.00012350337,0.729569,0.000015220821,0.000017668252,0.0000018126123],"study_design_scores_gemma":[0.0013829373,0.00029848152,0.826181,0.0011129766,0.00028111073,5.9204916e-7,0.00000813811,0.00048721628,0.16923255,0.0000020078185,0.0005398888,0.0004730998],"about_ca_topic_score_codex":0.0002668528,"about_ca_topic_score_gemma":0.00007734716,"teacher_disagreement_score":0.5603365,"about_ca_system_score_codex":0.0002942841,"about_ca_system_score_gemma":0.0005103244,"threshold_uncertainty_score":0.99975026},"labels":[],"label_agreement":null},{"id":"W4365513667","doi":"10.3390/medicina59040760","title":"Prevalence and Etiology of Community- and Hospital-Acquired Pneumonia in Saudi Arabia and Their Antimicrobial Susceptibility Patterns: A Systematic Review","year":2023,"lang":"en","type":"review","venue":"Medicina","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumonia; Antibiotic resistance; Etiology; Community-acquired pneumonia; Systematic review; Antibiotics; Acinetobacter; Intensive care medicine; Antimicrobial; Empiric therapy; Internal medicine; MEDLINE; Microbiology; Biology; Pathology; Alternative medicine","score_opus":0.04469595247594123,"score_gpt":0.33235144463543503,"score_spread":0.2876554921594938,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4365513667","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.06640967,0.92911863,0.000002759682,0.00045184646,0.00014969775,0.003716905,0.000088934954,0.000044633096,0.000016944892],"genre_scores_gemma":[0.018488778,0.9808191,0.000002268155,0.0003728697,0.000042249576,0.00015508561,0.000036229285,0.000039807663,0.00004358353],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.9963529,0.0015615469,0.0012941491,0.00037489453,0.00014082823,0.00027565524],"domain_scores_gemma":[0.99750936,0.0009402793,0.0005835928,0.00073316135,0.000081548744,0.00015208298],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.002010439,0.00044822544,0.004160055,0.00027494563,0.00011212997,0.000009331006,0.00015496023,0.00032427005,0.000009550892],"category_scores_gemma":[0.0011629327,0.00028309142,0.00016782702,0.00034878205,0.0006245193,0.00004466248,0.00021406209,0.0006909204,0.0000041791045],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000003096125,0.00010262346,0.004667304,0.98624724,0.00014391901,0.000025217085,0.0006996741,4.6519006e-9,0.000044403543,0.000002249139,0.000055336317,0.0080089485],"study_design_scores_gemma":[0.00048793058,0.00082892773,0.014222736,0.97817224,0.0027320709,0.00072638673,0.00022292299,0.0000015728672,9.861202e-7,0.000014810988,0.0023246885,0.00026471572],"about_ca_topic_score_codex":0.00011257107,"about_ca_topic_score_gemma":0.00009904247,"teacher_disagreement_score":0.051700518,"about_ca_system_score_codex":0.00006732097,"about_ca_system_score_gemma":0.00013382023,"threshold_uncertainty_score":0.99996215},"labels":[],"label_agreement":null},{"id":"W4366352697","doi":"10.1186/s12887-023-04004-2","title":"Children hospitalized with community-acquired pneumonia complicated by effusion: a single-centre retrospective cohort study","year":2023,"lang":"en","type":"article","venue":"BMC Pediatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Impact; McMaster University; University of Toronto; Hamilton Regional Laboratory Medicine Program; Western University","funders":"","keywords":"Medicine; Pleural effusion; Retrospective cohort study; Pneumonia; Community-acquired pneumonia; Intensive care unit; Cohort; Effusion; Medical record; Cohort study; Pediatrics; Surgery; Internal medicine","score_opus":0.01763232678119368,"score_gpt":0.2568799314971796,"score_spread":0.2392476047159859,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4366352697","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949583,0.00003488184,0.000056607554,0.00028810973,0.00019160504,0.0026306736,0.000120837656,0.0009232184,0.0007957899],"genre_scores_gemma":[0.997964,0.000035574834,0.000041806492,0.00020022268,0.00029317584,0.00012815099,0.00046143788,0.00007272833,0.0008028998],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99773264,0.00033881955,0.00039095682,0.0004370539,0.0006343685,0.00046616961],"domain_scores_gemma":[0.99825156,0.00015008922,0.00019354631,0.0008123393,0.00030525264,0.00028723464],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00044386848,0.00032947861,0.0006012761,0.00030001544,0.00068719836,0.0000584534,0.00021713531,0.00015561105,0.00003709822],"category_scores_gemma":[0.00018029909,0.00026384948,0.00012475802,0.0023637814,0.00012990218,0.000083012295,0.00016663091,0.00047775838,0.00020504495],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009848728,0.0022510448,0.98912877,0.00004233433,0.00013672932,0.000034262383,0.0004958291,0.000009054617,0.0027470272,0.000002894094,0.0050279447,0.000025624471],"study_design_scores_gemma":[0.0038297651,0.0018644966,0.99233514,0.000023834149,0.0005891096,0.000051122748,0.00044597645,0.000050759634,0.00004598643,0.00000931185,0.0004433999,0.00031109553],"about_ca_topic_score_codex":0.00020365117,"about_ca_topic_score_gemma":0.00009929543,"teacher_disagreement_score":0.004584545,"about_ca_system_score_codex":0.00025235693,"about_ca_system_score_gemma":0.00014502642,"threshold_uncertainty_score":0.99998134},"labels":[],"label_agreement":null},{"id":"W4366462833","doi":"10.1007/s11606-023-08203-6","title":"Corticosteroids in Community-Acquired Bacterial Pneumonia: a Systematic Review, Pairwise and Dose-Response Meta-Analysis","year":2023,"lang":"en","type":"review","venue":"Journal of General Internal Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":81,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Impact; McMaster University","funders":"National Cancer Institute; National Institutes of Health; Breast Cancer Research Foundation","keywords":"Medicine; Pneumonia; Relative risk; Intensive care unit; Mechanical ventilation; Community-acquired pneumonia; Internal medicine; Meta-analysis; Randomized controlled trial; Confidence interval","score_opus":0.16884087777836815,"score_gpt":0.41883469826531183,"score_spread":0.24999382048694369,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4366462833","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0018362607,0.9940643,0.000022121214,0.0016726808,0.00080183934,0.0014889973,0.000038739003,0.000027785813,0.000047307105],"genre_scores_gemma":[0.00027491458,0.9946942,0.000021157639,0.0013490565,0.0006437564,0.00013691495,0.000027896749,0.00008449809,0.0027676031],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.98824435,0.0051777586,0.0050154566,0.00030712844,0.0008770703,0.0003782212],"domain_scores_gemma":[0.9931861,0.0017043024,0.0033226057,0.0008175936,0.00044118686,0.0005282],"candidate_categories":["metaepi_narrow","metaepi_broad"],"consensus_categories":[],"category_scores_codex":[0.0071420497,0.00074462296,0.0151667865,0.0026881413,0.00010409959,0.00004351193,0.00049652846,0.00033223303,0.00025994616],"category_scores_gemma":[0.0035643433,0.00039805364,0.0037052715,0.0017714434,0.00025654357,0.00013115589,0.00017949217,0.0017170424,0.000024404457],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045027028,0.00033972223,0.00003788288,0.7834068,0.20730482,0.0034182437,0.00035798998,0.0000017839532,0.0010890323,0.0000030255717,0.0011296689,0.0024607764],"study_design_scores_gemma":[0.0010763692,0.0020987254,0.00020997398,0.32779557,0.6142075,0.006573724,0.00006232025,0.000011222436,0.0000012067896,0.000005423576,0.04769663,0.00026131963],"about_ca_topic_score_codex":0.00018651811,"about_ca_topic_score_gemma":0.000096427946,"teacher_disagreement_score":0.4556112,"about_ca_system_score_codex":0.00035854266,"about_ca_system_score_gemma":0.0003599992,"threshold_uncertainty_score":0.9998471},"labels":[],"label_agreement":null},{"id":"W4366463600","doi":"10.1007/s40121-023-00798-x","title":"Historical Population-Level Impact of Infant 13-Valent Pneumococcal Conjugate Vaccine (PCV13) National Immunization Programs on Invasive Pneumococcal Disease in Australia, Canada, England and Wales, Israel, and the United States","year":2023,"lang":"en","type":"article","venue":"Infectious Diseases and Therapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Pfizer","keywords":"Pneumococcal conjugate vaccine; Incidence (geometry); Medicine; Serotype; Population; Pneumococcal disease; Demography; Pediatrics; Vaccination; Streptococcus pneumoniae; Immunology; Environmental health; Biology; Antibiotics; Microbiology","score_opus":0.026918322685030582,"score_gpt":0.2915037630268598,"score_spread":0.26458544034182924,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4366463600","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99737376,0.00060772843,0.0000018626835,0.0008646595,0.00010144614,0.0008344883,0.0001606079,0.000048967628,0.0000065003737],"genre_scores_gemma":[0.99581367,0.0033471454,4.2086825e-7,0.00019925622,0.00007632841,0.00010752268,0.00038809978,0.000019938981,0.00004763159],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987431,0.00015908999,0.00035761404,0.00025154042,0.0002678108,0.00022085382],"domain_scores_gemma":[0.9989324,0.0003461102,0.00013296399,0.00014315703,0.0001703038,0.00027504738],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016184541,0.0002197023,0.00035360595,0.0003112111,0.00019329142,0.000038661896,0.000039273607,0.000063802356,0.000009035734],"category_scores_gemma":[0.000174015,0.00014170815,0.000083454164,0.00051503803,0.00011504965,0.00007653193,0.000029533883,0.0001769691,6.0465067e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00081658555,0.0003070061,0.9951385,0.00007678718,0.00016392245,0.00002812829,0.00023055013,0.001265912,0.00043472057,0.00016761887,0.00005642392,0.0013138241],"study_design_scores_gemma":[0.0062621743,0.0006195181,0.9898398,0.0000989672,0.000072107556,0.000025203606,0.000040598046,0.0012377664,0.000007788298,0.0008132147,0.0008276481,0.00015520056],"about_ca_topic_score_codex":0.3165922,"about_ca_topic_score_gemma":0.052691206,"teacher_disagreement_score":0.26390097,"about_ca_system_score_codex":0.00029744266,"about_ca_system_score_gemma":0.00030316185,"threshold_uncertainty_score":0.9645947},"labels":[],"label_agreement":null},{"id":"W4366977150","doi":"10.1016/j.vaccine.2023.04.036","title":"A Phase III, multicenter, randomized, double-blind, active comparator-controlled study to evaluate the safety, tolerability, and immunogenicity of V114 compared with PCV13 in healthy infants (PNEU-PED-EU-1)","year":2023,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Merck Canada Inc. (Canada)","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Confidence interval; Toddler; Serotype; Adverse effect; Immunogenicity; Vaccination; Tolerability; Randomized controlled trial; Neutralizing antibody; Seroconversion; Pediatrics; Streptococcus pneumoniae; Internal medicine; Antibody; Immunology; Microbiology; Biology","score_opus":0.046340696379162494,"score_gpt":0.38029437804928395,"score_spread":0.33395368167012146,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4366977150","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9830739,0.00014482718,0.00003152418,0.003189269,0.00017723026,0.013126266,0.000028280787,0.00008528931,0.00014343944],"genre_scores_gemma":[0.9983521,0.00007807209,0.000009678737,0.0005884154,0.00006302528,0.0008204307,0.000020037369,0.000027307487,0.000040941275],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9965813,0.0007645348,0.0012774823,0.00048663138,0.00045994276,0.00043011524],"domain_scores_gemma":[0.99768305,0.0007987575,0.00028422257,0.00064874615,0.00034559597,0.0002396044],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024605603,0.0003435171,0.0022327732,0.0004679164,0.00023666368,0.000026971842,0.00017974488,0.00006575568,0.000059505932],"category_scores_gemma":[0.00023691443,0.00019375594,0.00018394808,0.0012348793,0.00007067215,0.000101568054,0.00016487253,0.0004057389,0.000020362224],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.9440727,0.005092329,0.03858274,0.00005635652,0.0008673325,0.000027333559,0.00491084,0.00047219516,0.0055433507,0.0000085795355,0.00005690934,0.00030929016],"study_design_scores_gemma":[0.9230402,0.0038110942,0.06442774,0.00012292406,0.00062762736,0.000027200695,0.00215083,0.0048830686,0.0005982679,0.000008238644,0.00011711887,0.00018565035],"about_ca_topic_score_codex":0.00094550697,"about_ca_topic_score_gemma":0.0023265812,"teacher_disagreement_score":0.025845002,"about_ca_system_score_codex":0.0001164769,"about_ca_system_score_gemma":0.00021220611,"threshold_uncertainty_score":0.7901138},"labels":[],"label_agreement":null},{"id":"W4367047556","doi":"10.1093/cid/ciad252","title":"Several Concerns With Doxycycline Meta-Analysis","year":2023,"lang":"en","type":"review","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University","funders":"Gilead Sciences; National Institutes of Health; Pfizer","keywords":"Medicine; Bronchitis; Pneumonia; Doxycycline; Adverse effect; Meta-analysis; Chronic bronchitis; Exacerbation; Spiramycin; Internal medicine; Antibiotics; Erythromycin","score_opus":0.41747815547316636,"score_gpt":0.5274209149841274,"score_spread":0.109942759510961,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4367047556","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00004274335,0.9946166,0.00015296362,0.00017102761,0.0005098102,0.0014787916,0.00082833413,0.0010404955,0.0011591958],"genre_scores_gemma":[0.00022337679,0.99162346,0.00000459219,0.0011237031,0.0013278493,0.00069356436,0.0006646183,0.00015699933,0.004181823],"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99532694,0.00070142833,0.0019172763,0.0010948793,0.0004661379,0.0004933563],"domain_scores_gemma":[0.9945906,0.0022003816,0.0008435133,0.0012091981,0.00025155317,0.0009047738],"candidate_categories":["metaepi_narrow","metaepi_broad","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00043018803,0.00079499296,0.009410516,0.00071459566,0.00022704618,0.000081709455,0.00020182095,0.0006318411,0.0011919272],"category_scores_gemma":[0.00084796216,0.0004536742,0.0140619185,0.0027138025,0.0005002399,0.00007771711,0.00012447084,0.0011169711,0.0012378967],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017363123,0.0017763798,0.01215085,0.008611794,0.9331863,0.00080460956,0.000004919874,0.00006657217,1.6961785e-8,0.00007008865,0.0049639135,0.038347196],"study_design_scores_gemma":[0.0003313441,0.00039841063,0.0010062578,0.00031235034,0.5058862,0.000026205194,0.0000018978851,0.00000615572,5.879436e-9,0.00001590035,0.49172577,0.00028950654],"about_ca_topic_score_codex":0.000027185206,"about_ca_topic_score_gemma":0.00012840003,"teacher_disagreement_score":0.48676184,"about_ca_system_score_codex":0.00012178716,"about_ca_system_score_gemma":0.0010590398,"threshold_uncertainty_score":0.9997915},"labels":[],"label_agreement":null},{"id":"W4367668073","doi":"10.1093/jac/dkad064","title":"<i> <u>S</u>treptococcus pneumoniae</i> serotyping and antimicrobial susceptibility: <u>a</u>ssessment for <u>v</u>accine <u>e</u>fficacy in Canada after the introduction of PCV13","year":2023,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba","funders":"Pfizer Canada; Public Health Agency of Canada; University of Manitoba","keywords":"Streptococcus pneumoniae; Serotype; Pneumococcal infections; Antibiotic resistance; Antimicrobial; Vaccination; Microbiology; Biology; Medicine; Virology; Antibiotics","score_opus":0.009081494013204057,"score_gpt":0.25649260088514947,"score_spread":0.24741110687194542,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4367668073","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9481759,0.000041648593,0.000079367244,0.050182495,0.0005536859,0.0009214222,0.000017884286,0.000015001707,0.000012584937],"genre_scores_gemma":[0.99538827,0.000524277,0.00016539669,0.0030871097,0.00069826737,0.000018200852,0.000008138252,0.000039069007,0.000071255214],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9981678,0.00007454282,0.00091759174,0.00025814102,0.0002260225,0.00035586825],"domain_scores_gemma":[0.998658,0.00013666088,0.00045581028,0.00027548813,0.00036661103,0.000107445616],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005978325,0.00022941409,0.00062928826,0.00028751977,0.000099036966,0.000031552605,0.00013649784,0.00009704853,0.000051587293],"category_scores_gemma":[0.00007580159,0.00016115789,0.00021384304,0.00059255393,0.00011395863,0.00015470039,0.000034772278,0.00037419013,0.0000017037676],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008592764,0.00019899817,0.08681616,0.00024602754,0.00015438838,0.000026201755,0.00032214014,0.00020249792,0.88615805,0.0000032576245,0.021534242,0.0034787518],"study_design_scores_gemma":[0.0139568,0.0013659263,0.5181978,0.00081811444,0.00033161064,0.0015630821,0.0009870783,0.00039904634,0.3933468,0.000078868565,0.068331674,0.0006232572],"about_ca_topic_score_codex":0.0097699305,"about_ca_topic_score_gemma":0.033396818,"teacher_disagreement_score":0.4928113,"about_ca_system_score_codex":0.00030101254,"about_ca_system_score_gemma":0.0010333628,"threshold_uncertainty_score":0.9968241},"labels":[],"label_agreement":null},{"id":"W4367668075","doi":"10.1093/jac/dkad066","title":"Analysis of MDR in the predominant <i>Streptococcus pneumoniae</i> serotypes in Canada: the SAVE study, 2011–2020","year":2023,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; University of Manitoba","funders":"Merck Canada; Pfizer Canada; Public Health Agency; Public Health Agency of Canada; University of Manitoba; Pfizer","keywords":"Streptococcus pneumoniae; Serotype; Microbiology; Penicillin; Antimicrobial; Antibiotic resistance; Biology; Cephalosporin; Pneumococcal infections; Multiple drug resistance; Antibiotics; Virology; Medicine","score_opus":0.01127987134466153,"score_gpt":0.26499866632299607,"score_spread":0.25371879497833455,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4367668075","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9829621,0.00003909872,0.000003222241,0.016276425,0.00015933579,0.0004716791,0.00001301364,0.0000046223504,0.000070536495],"genre_scores_gemma":[0.9973495,0.0003633482,0.0000034300674,0.0021193638,0.00009809715,0.0000060938096,0.000001984711,0.000013921707,0.00004423203],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983793,0.00017722657,0.00073935674,0.00013378487,0.0003405038,0.0002298385],"domain_scores_gemma":[0.9989726,0.00018195182,0.00039009604,0.00028405126,0.00012378559,0.00004753186],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00085029105,0.00014697268,0.00060673495,0.00041122176,0.00006267721,0.00001604499,0.0002830488,0.000053670177,0.000069114314],"category_scores_gemma":[0.000038054626,0.00007682924,0.00026014866,0.0017935834,0.00006485069,0.000050818242,0.00002100872,0.00042970706,0.0000036197875],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018256297,0.00050856883,0.84041375,0.000021051981,0.0008542407,0.00036136658,0.0027837465,0.0016734847,0.14508578,0.0000014589981,0.007342656,0.00077130675],"study_design_scores_gemma":[0.0022859382,0.00036291045,0.98374146,0.00007634267,0.00047155836,0.00010203775,0.0024301482,0.00022129754,0.006682396,0.0000042273814,0.0035232196,0.000098475575],"about_ca_topic_score_codex":0.055755533,"about_ca_topic_score_gemma":0.41069683,"teacher_disagreement_score":0.35494128,"about_ca_system_score_codex":0.00017308762,"about_ca_system_score_gemma":0.00087512727,"threshold_uncertainty_score":0.95053226},"labels":[],"label_agreement":null},{"id":"W4367668077","doi":"10.1093/jac/dkad067","title":"Genomic investigation of the most common <i>Streptococcus pneumoniae</i> serotypes causing invasive infections in Canada: the SAVE study, 2011–2020","year":2023,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Mount Sinai Hospital; Queen Elizabeth II Health Sciences Centre; Government of New Brunswick; Public Health Ontario; Manitoba Health; University of Toronto; Saskatchewan Health; Saskatchewan Health Authority; University of Manitoba; Institut National de Santé Publique du Québec; Canada Research Chairs; University of Prince Edward Island; Public Health Agency of Canada","funders":"","keywords":"Streptococcus pneumoniae; Serotype; Microbiology; Biology; Pneumococcal infections; Virology; Medicine; Antibiotics","score_opus":0.013710675596596267,"score_gpt":0.2451336874030054,"score_spread":0.23142301180640912,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4367668077","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.981623,0.000020872403,0.000002406045,0.017169714,0.0005155377,0.0006024883,0.0000117577165,0.000010443768,0.00004376443],"genre_scores_gemma":[0.9965288,0.00019793231,0.0000038325743,0.0030256833,0.00017594185,0.00000480564,0.0000018733455,0.000023324332,0.000037812544],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99865705,0.00015998047,0.0006321495,0.00011872829,0.00023943077,0.00019268604],"domain_scores_gemma":[0.998804,0.00015496244,0.00053208973,0.0002479446,0.0001910924,0.000069964575],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003447514,0.00015068825,0.00036867266,0.00015486243,0.00019949178,0.000019977118,0.00015662491,0.000062579325,0.000021944024],"category_scores_gemma":[0.000052432726,0.00009048036,0.00013857204,0.00076809217,0.00012178845,0.00008070609,0.000043214575,0.0005025854,0.0000037613017],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021408747,0.00007230099,0.5386496,0.000017288714,0.000089054425,0.000029243483,0.0007228106,0.0008176636,0.4553463,8.574179e-7,0.004118306,0.00011515427],"study_design_scores_gemma":[0.0017798155,0.00027375494,0.9002226,0.0002056876,0.00009686346,0.00040018116,0.00083089864,0.00004402882,0.09456133,0.000024735018,0.0014527378,0.0001073577],"about_ca_topic_score_codex":0.06188031,"about_ca_topic_score_gemma":0.41492796,"teacher_disagreement_score":0.36157298,"about_ca_system_score_codex":0.0003811887,"about_ca_system_score_gemma":0.002454188,"threshold_uncertainty_score":0.9443667},"labels":[],"label_agreement":null},{"id":"W4367668079","doi":"10.1093/jac/dkad068","title":"Comparison of PCV10, PCV13, PCV15, PCV20 and PPSV23 vaccine coverage of invasive <i>Streptococcus pneumoniae</i> isolate serotypes in Canada: the SAVE study, 2011–20","year":2023,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; University of Manitoba","funders":"Pfizer Canada; Public Health Agency of Canada; University of Manitoba","keywords":"Streptococcus pneumoniae; Serotype; Broth microdilution; Microbiology; Antibiotic resistance; Pneumococcal infections; Antimicrobial; Biology; Pneumococcal disease; Medicine; Virology; Minimum inhibitory concentration; Antibiotics","score_opus":0.0173906543125459,"score_gpt":0.2893012741508972,"score_spread":0.2719106198383513,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4367668079","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9917655,0.000070957896,0.000009554465,0.0059197578,0.0002631735,0.001837722,0.000028285645,0.0000098260425,0.00009520427],"genre_scores_gemma":[0.99822265,0.0005293,0.000010590929,0.00099135,0.00011889967,0.000016282016,0.0000023987554,0.000031716438,0.00007679473],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99795496,0.0001240715,0.0011335762,0.00018399654,0.000329906,0.00027347627],"domain_scores_gemma":[0.99817353,0.00024234707,0.0009169442,0.00026406313,0.0002890862,0.00011403461],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004289026,0.0002359484,0.0009770043,0.0002873205,0.00008303029,0.000014697119,0.00020069396,0.000094115756,0.00006104075],"category_scores_gemma":[0.000054138734,0.00015889031,0.00016552256,0.0004988951,0.00008056057,0.0001025764,0.00005053389,0.0005079118,0.0000032354344],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035862613,0.00040446877,0.5191603,0.00010724557,0.00024400199,0.000072884155,0.0009863811,0.00036341735,0.4703352,0.0000012456512,0.007314965,0.0006513115],"study_design_scores_gemma":[0.010568392,0.0022065903,0.7409023,0.00049941364,0.00020560647,0.0002654228,0.0017284284,0.0001370195,0.2349685,0.00002284071,0.008222339,0.00027313386],"about_ca_topic_score_codex":0.017103484,"about_ca_topic_score_gemma":0.12259787,"teacher_disagreement_score":0.23536669,"about_ca_system_score_codex":0.00014452056,"about_ca_system_score_gemma":0.0011373094,"threshold_uncertainty_score":0.9894417},"labels":[],"label_agreement":null},{"id":"W4367668094","doi":"10.1093/jac/dkad065","title":"Antimicrobial susceptibility testing of invasive isolates of <i>Streptococcus pneumoniae</i> from Canadian patients: the SAVE study, 2011–2020","year":2023,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; University of Manitoba","funders":"Pfizer Canada; Public Health Agency of Canada; University of Manitoba","keywords":"Streptococcus pneumoniae; Levofloxacin; Penicillin; Microbiology; Meningitis; Medicine; Broth microdilution; Ceftriaxone; Antimicrobial; Trimethoprim; Sulfamethoxazole; Biology; Antibiotics; Minimum inhibitory concentration; Surgery","score_opus":0.015708383147741395,"score_gpt":0.25541274126074937,"score_spread":0.23970435811300797,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4367668094","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99454576,0.000017675678,0.000005032321,0.003918111,0.00049479766,0.0007042377,0.00016472396,0.00002195275,0.00012773479],"genre_scores_gemma":[0.9977442,0.00012973975,0.00007532195,0.0016619539,0.0003031735,0.0000019836898,0.000013456218,0.000040517814,0.000029663694],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9978818,0.00014169622,0.0011155364,0.00024267037,0.00026704845,0.0003512356],"domain_scores_gemma":[0.99708295,0.0003628296,0.0009677893,0.00039262456,0.0009866151,0.00020720306],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048899563,0.0002544981,0.0007530507,0.0003068319,0.00017406335,0.000026074193,0.0003165881,0.0001488759,0.00012029453],"category_scores_gemma":[0.0003184232,0.00017678863,0.0003600516,0.000692698,0.00025191842,0.00013483886,0.000046910038,0.00048005037,0.00001916996],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009491656,0.00047572018,0.4623196,0.00003696392,0.0002429049,0.000027003309,0.0009545132,0.00004281657,0.5287439,2.5758658e-7,0.0065653473,0.00049603585],"study_design_scores_gemma":[0.0054068835,0.0020396665,0.67354864,0.00046224435,0.0003008129,0.00007765209,0.00077585416,0.000024265786,0.31479847,0.00002443834,0.0022792749,0.00026178834],"about_ca_topic_score_codex":0.007884055,"about_ca_topic_score_gemma":0.00762246,"teacher_disagreement_score":0.21394542,"about_ca_system_score_codex":0.00012342278,"about_ca_system_score_gemma":0.0009778572,"threshold_uncertainty_score":0.99872255},"labels":[],"label_agreement":null},{"id":"W4367845547","doi":"10.21203/rs.3.rs-2828156/v1","title":"Impact assessment of self-medication on COVID-19 prevalence in Gauteng, South Africa, using an age-structured disease transmission modelling framework","year":2023,"lang":"en","type":"preprint","venue":"Research Square","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Response Biomedical (Canada); York University","funders":"International Development Research Centre","keywords":"Psychological intervention; Disease; Public health; Medicine; Transmission (telecommunications); Infectious disease (medical specialty); Vaccination; Markov chain Monte Carlo; Demography; Environmental health; Statistics; Computer science; Monte Carlo method; Mathematics; Psychiatry; Internal medicine; Virology; Nursing","score_opus":0.21348769807285695,"score_gpt":0.5009717058942639,"score_spread":0.28748400782140693,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4367845547","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8878335,0.0003439936,0.10747093,0.00084346323,0.00019252505,0.0026783636,0.0003420226,0.00023379667,0.00006145308],"genre_scores_gemma":[0.99590296,0.0006244576,0.0026989249,0.000038842205,0.00022168405,0.00018683734,0.00020499111,0.000071926646,0.000049408343],"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9948681,0.0010828158,0.00060216384,0.0008804721,0.0019357393,0.0006306897],"domain_scores_gemma":[0.9964139,0.0005327948,0.00020779933,0.0011420762,0.00034318943,0.0013602277],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0020952262,0.00032576022,0.00055084313,0.0013822464,0.00027114162,0.000059353813,0.0003371277,0.0005924849,0.0001285053],"category_scores_gemma":[0.00089850894,0.00026185112,0.00029019738,0.00090360205,0.00018087347,0.00007991589,0.00018703623,0.003042415,0.000005600632],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035667294,0.0014217487,0.14588304,0.0139135225,0.0001590672,0.00047773114,0.009647915,0.8247817,0.0026967535,0.00015130192,0.000050861072,0.0004596455],"study_design_scores_gemma":[0.0009586711,0.00083413237,0.34662244,0.00886002,0.00019054233,0.0000047996205,0.00059267523,0.6366418,0.00004390166,0.004625945,0.0002767836,0.00034830262],"about_ca_topic_score_codex":0.00020056704,"about_ca_topic_score_gemma":0.0000057669813,"teacher_disagreement_score":0.2007394,"about_ca_system_score_codex":0.0015457508,"about_ca_system_score_gemma":0.004982554,"threshold_uncertainty_score":0.9999834},"labels":[],"label_agreement":null},{"id":"W4368370749","doi":"10.20944/preprints202305.0021.v1","title":"Patterns of Global Genetic Diversity of Streptococcus pneumoniae Inferred Based on Archived Multilocus Sequence Typing Data","year":2023,"lang":"en","type":"preprint","venue":"Preprints.org","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Multilocus sequence typing; Biology; Genetic diversity; Genetics; Evolutionary biology; Linkage disequilibrium; Phylogenetic tree; Typing; Genetic variation; Streptococcus pneumoniae; Biological dispersal; Population; Genotype; Gene; Haplotype; Demography","score_opus":0.2858096137543327,"score_gpt":0.4004964279671162,"score_spread":0.11468681421278348,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4368370749","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9942356,0.000009262296,0.0008234952,0.00032318587,0.0006434247,0.0012457849,0.0019902498,0.00019665017,0.00053238554],"genre_scores_gemma":[0.99921876,0.000048933063,0.000082352635,0.000104242325,0.000088024266,0.00005285762,0.00029445143,0.000036350175,0.000074047915],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99694103,0.00022473144,0.0007645253,0.0011753433,0.00053165725,0.0003627264],"domain_scores_gemma":[0.99529904,0.00018440341,0.0006159782,0.003443754,0.00022739891,0.00022942884],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00040858952,0.00039862582,0.0008031533,0.00022114538,0.0001288279,0.00000723753,0.0010929683,0.00032237353,0.00014941508],"category_scores_gemma":[0.00065741816,0.0003966006,0.0002929523,0.00019502867,0.00018296552,0.00005042506,0.0065067937,0.0008285151,0.0001673152],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008651812,0.00041316863,0.9577372,0.0009497957,0.00027134307,0.00007168195,0.00017787253,0.006697122,0.0329068,0.000009516575,0.000006202032,0.0006727958],"study_design_scores_gemma":[0.0009110678,0.000108588225,0.9863505,0.0014289249,0.0003253888,0.000005334325,0.00004363561,0.0061436803,0.0041527236,0.00013828918,0.00011430018,0.0002775999],"about_ca_topic_score_codex":0.0016591231,"about_ca_topic_score_gemma":0.00028509105,"teacher_disagreement_score":0.028754078,"about_ca_system_score_codex":0.00021999283,"about_ca_system_score_gemma":0.00061108504,"threshold_uncertainty_score":0.9998486},"labels":[],"label_agreement":null},{"id":"W4372271641","doi":"10.1101/2023.05.04.23289541","title":"THE IMPACT OF THE COVID-19 PANDEMIC ON NON-COVID-19 COMMUNITY-ACQUIRED PNEUMONIA, A RETROSPECTIVE COHORT STUDY","year":2023,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Centre for Advancing Health Outcomes; St. Paul's Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research; Providence Health Care; St. Paul's Foundation","keywords":"Medicine; Coronavirus disease 2019 (COVID-19); Pandemic; Confounding; Pneumonia; Retrospective cohort study; Community-acquired pneumonia; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Cohort study; 2019-20 coronavirus outbreak; Internal medicine; Virology; Infectious disease (medical specialty)","score_opus":0.09879669138252144,"score_gpt":0.3986923826886601,"score_spread":0.29989569130613863,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4372271641","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9879246,0.00004109585,0.000056245957,0.0043051736,0.0013758589,0.004846475,0.00023153017,0.0003714879,0.00084756775],"genre_scores_gemma":[0.99553674,0.0001935223,0.0000011717564,0.0019089561,0.00024629713,0.0008059533,0.000032121006,0.000106031526,0.001169175],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9945446,0.002295928,0.0008901541,0.00069471716,0.0010064088,0.0005681847],"domain_scores_gemma":[0.9926061,0.0019744502,0.00075673097,0.0037322228,0.00027391984,0.0006565575],"candidate_categories":["metaepi_narrow","sts","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.004712133,0.000629627,0.0012301035,0.00033062336,0.0019037067,0.000075136566,0.0012525279,0.00047057413,0.000060382208],"category_scores_gemma":[0.0071583586,0.000331919,0.0010114921,0.0008974969,0.0007761358,0.000033309232,0.001288978,0.0031212028,0.00006921254],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018824525,0.0008865644,0.9853298,0.00018336435,0.0013972189,0.0000617807,0.0040996205,0.0014124995,0.0048820083,0.000012013958,0.0015199494,0.000026904649],"study_design_scores_gemma":[0.0014444367,0.0013494048,0.99253964,0.00013760958,0.000508975,0.00008509865,0.0012382432,0.000118676835,0.000039116603,0.00077643717,0.0014647043,0.00029767564],"about_ca_topic_score_codex":0.010571773,"about_ca_topic_score_gemma":0.0034386292,"teacher_disagreement_score":0.007612207,"about_ca_system_score_codex":0.0028124047,"about_ca_system_score_gemma":0.0030144404,"threshold_uncertainty_score":0.9999133},"labels":[],"label_agreement":null},{"id":"W4376637663","doi":"10.1101/2023.05.15.23289731","title":"Routine respiratory metagenomics service for intensive care unit patients","year":2023,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Thomas Hospital","funders":"Medical Research Council; National Institute for Health and Care Research","keywords":"Fastidious organism; Medicine; Intensive care unit; SCCmec; Infection control; Microbiology; Intensive care medicine; Staphylococcus aureus; Methicillin-resistant Staphylococcus aureus; Biology; Bacteria","score_opus":0.11218516120783326,"score_gpt":0.3444927586392799,"score_spread":0.23230759743144666,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4376637663","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9916332,0.00023694095,0.0001632974,0.0018126129,0.0028609107,0.0019079226,0.0005570856,0.00035620804,0.00047184556],"genre_scores_gemma":[0.9804177,0.000055701836,0.00014319582,0.015254986,0.0009322501,0.0007051587,0.0010898381,0.00023729452,0.0011638325],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9980066,0.00009206821,0.0005571084,0.00066755037,0.00028109926,0.0003955676],"domain_scores_gemma":[0.9945459,0.0001414589,0.00028517074,0.0009204646,0.0038617773,0.00024527276],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002515076,0.00040605487,0.0007104674,0.00036344407,0.00018827931,0.000034381486,0.00026459785,0.00048791405,0.000027797063],"category_scores_gemma":[0.0008933674,0.00036069413,0.00037243357,0.000319637,0.00006063683,0.000033807788,0.0005117483,0.00081161945,0.00025519033],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016278638,0.00013265431,0.9841759,0.0030500488,0.00079661043,0.00006025525,0.0030426867,0.00037801388,0.0049029132,0.00006477222,0.0023741238,0.00085919345],"study_design_scores_gemma":[0.0034525576,0.00063347386,0.6925857,0.0007711467,0.0015658961,0.00000674034,0.0028990628,0.00020934093,0.0029590165,0.00021267023,0.2939476,0.0007567713],"about_ca_topic_score_codex":0.0000524915,"about_ca_topic_score_gemma":0.00017431473,"teacher_disagreement_score":0.2915902,"about_ca_system_score_codex":0.00019178158,"about_ca_system_score_gemma":0.00047053644,"threshold_uncertainty_score":0.9998845},"labels":[],"label_agreement":null},{"id":"W4376872917","doi":"10.1007/s00134-023-07082-z","title":"Correction: ERS/ESICM/ESCMID/ALAT guidelines for the management of severe community-acquired pneumonia","year":2023,"lang":"en","type":"erratum","venue":"Intensive Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Medicine; Community-acquired pneumonia; Anesthesiology; Pneumonia; Pain medicine; Intensive care medicine; Medical physics; Internal medicine; Pathology","score_opus":0.09241333525694881,"score_gpt":0.3719974736506744,"score_spread":0.27958413839372565,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4376872917","genre_codex":"editorial","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00230769,0.0362733,0.0014985631,0.24330594,0.62161905,0.012466297,0.0010864583,0.0015626521,0.07988008],"genre_scores_gemma":[0.017229969,0.016603943,0.00012972548,0.05597671,0.017834531,0.0014792142,0.004862366,0.00062383135,0.8852597],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9967647,0.00016635073,0.0012343781,0.00050554104,0.0008171601,0.0005118462],"domain_scores_gemma":[0.9787865,0.0009836163,0.0006263783,0.0015337522,0.017859146,0.00021058322],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00058105757,0.00068261864,0.0015757503,0.0004811053,0.00067372865,0.000016317319,0.0005190259,0.00061345985,0.00012227024],"category_scores_gemma":[0.0037816851,0.00042206966,0.00058303395,0.00083341997,0.0008462661,0.000043499036,0.00028755012,0.0015514096,0.000054096705],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001590654,0.00003254041,0.00015355814,0.0030406066,0.0018505414,0.00015944599,0.002621166,0.00003141535,0.0007533119,0.000024435092,0.98346907,0.007704823],"study_design_scores_gemma":[0.0020601097,0.0015913423,0.0053322148,0.0131001985,0.003857594,0.00042929404,0.12377991,0.00020159908,0.00005912602,0.00004750326,0.84918165,0.00035948367],"about_ca_topic_score_codex":0.00058318314,"about_ca_topic_score_gemma":0.00029704114,"teacher_disagreement_score":0.8053796,"about_ca_system_score_codex":0.00034885432,"about_ca_system_score_gemma":0.00032878816,"threshold_uncertainty_score":0.9998231},"labels":[],"label_agreement":null},{"id":"W4377020212","doi":"10.3390/microorganisms11051333","title":"Changes in the Incidence of Invasive Pneumococcal Disease in Calgary, Canada, during the SARS-CoV-2 Pandemic 2020–2022","year":2023,"lang":"en","type":"article","venue":"Microorganisms","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Children's Hospital; University of Calgary","funders":"Pfizer Canada; Pfizer","keywords":"Pandemic; Incidence (geometry); Outbreak; Medicine; Quarter (Canadian coin); Transmission (telecommunications); Population; Virology; Serotype; Pneumococcal infections; Coronavirus disease 2019 (COVID-19); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Vaccination; Disease; Demography; Streptococcus pneumoniae; Environmental health; Infectious disease (medical specialty); Biology; Geography; Internal medicine; Microbiology","score_opus":0.016451367826026596,"score_gpt":0.26148729856402486,"score_spread":0.24503593073799826,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4377020212","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9920418,0.00012339606,8.04268e-7,0.007133427,0.00014087827,0.0004562922,0.000024063245,0.000027808588,0.00005153001],"genre_scores_gemma":[0.9976462,0.00016872403,0.0000010020962,0.0018894431,0.00006935935,0.00006743497,0.000010181702,0.000017512511,0.00013013065],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99888325,0.00013267204,0.0002395548,0.00020855531,0.000242459,0.00029351725],"domain_scores_gemma":[0.9993287,0.00019038118,0.00006564593,0.0003313204,0.000033488268,0.000050491915],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029342517,0.00013193423,0.00020260969,0.00012537042,0.00011988464,0.000010355931,0.00023718967,0.00005542532,0.000025307461],"category_scores_gemma":[0.00020886642,0.00008103685,0.00004275481,0.0009412589,0.00010778073,0.000031268806,0.00010498483,0.00036092303,0.000019079689],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014083938,0.000028307837,0.31872502,0.00005322524,0.0000073918077,0.00049492996,0.00080284086,0.000006728535,0.67953527,0.000005839218,0.00027928423,0.000047068883],"study_design_scores_gemma":[0.00040984098,0.00003618893,0.8623033,0.00009699929,0.000022008955,0.000096718446,0.00064643705,0.000015438141,0.1352422,0.000040589945,0.0010061048,0.00008414161],"about_ca_topic_score_codex":0.06636275,"about_ca_topic_score_gemma":0.8096499,"teacher_disagreement_score":0.74328715,"about_ca_system_score_codex":0.00019838348,"about_ca_system_score_gemma":0.00070989184,"threshold_uncertainty_score":0.93985444},"labels":[],"label_agreement":null},{"id":"W4377115976","doi":"10.3390/pathogens12050732","title":"Systematic Review and Meta-Analysis of the Efficacy and Effectiveness of Pneumococcal Vaccines in Adults","year":2023,"lang":"en","type":"review","venue":"Pathogens","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Pneumococcal polysaccharide vaccine; Pneumococcal pneumonia; Randomized controlled trial; Internal medicine; Pediatrics; Streptococcus pneumoniae; Pneumococcal disease","score_opus":0.0670674896404123,"score_gpt":0.3636634595512466,"score_spread":0.2965959699108343,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4377115976","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0011120404,0.99453986,9.568918e-7,0.000024870757,0.000028671342,0.0040652105,0.00019630781,0.00001291754,0.000019168874],"genre_scores_gemma":[0.0011961716,0.9982007,0.0000015692217,0.000023126555,0.000006914361,0.00049769785,0.00001631392,0.000026750731,0.000030733056],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9970087,0.0012574543,0.0011067169,0.0003196735,0.00017723124,0.00013026127],"domain_scores_gemma":[0.997102,0.0015096635,0.0006233969,0.00059824303,0.000103898754,0.00006275391],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012324594,0.0002958053,0.008495303,0.00046576498,0.00003165617,0.0000038854323,0.00010642757,0.00015400338,0.000010298545],"category_scores_gemma":[0.0010566084,0.00014010291,0.001743218,0.0020320853,0.00006294523,0.000014546031,0.00009463885,0.0002095976,0.00000237346],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000024860178,0.000057255063,0.00016878983,0.9439013,0.05557928,0.000008396029,0.000022528804,5.9107003e-7,0.00003012413,0.000014849437,5.3241047e-7,0.00021384573],"study_design_scores_gemma":[0.0001572185,0.000047999656,0.004784114,0.21034758,0.7842015,0.000047604535,0.000005216625,0.0000019868003,0.0000012980662,0.0000018329857,0.00030677475,0.000096887765],"about_ca_topic_score_codex":0.00001171426,"about_ca_topic_score_gemma":0.000026325879,"teacher_disagreement_score":0.73355377,"about_ca_system_score_codex":0.000024734092,"about_ca_system_score_gemma":0.00007872908,"threshold_uncertainty_score":0.5807219},"labels":[],"label_agreement":null},{"id":"W4377139578","doi":"10.3389/fimmu.2023.1175275","title":"Chronic ethanol exposure impairs alveolar leukocyte infiltration during pneumococcal pneumonia, leading to an increased bacterial burden despite increased CXCL1 and nitric oxide levels","year":2023,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Pró-Reitoria de Pesquisa, Universidade Federal de Minas Gerais; Fundação de Amparo à Pesquisa do Estado de Minas Gerais; Universidade Federal de Minas Gerais; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior","keywords":"CXCL1; Bronchoalveolar lavage; Streptococcus pneumoniae; Pneumococcal pneumonia; Immunology; Inflammation; Medicine; Pneumonia; Lung; Infiltration (HVAC); Nitric oxide; Chemokine; Cellular infiltration; Microbiology; Internal medicine; Biology; Antibiotics","score_opus":0.014139876912341092,"score_gpt":0.26118955497126156,"score_spread":0.24704967805892047,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4377139578","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99658173,0.00045550006,0.0002461449,0.00040703538,0.00088187517,0.00092881196,0.000027234873,0.00038697605,0.000084665204],"genre_scores_gemma":[0.9982933,0.00018066849,0.00033569496,0.00011497632,0.0005077917,0.00021752101,0.000108015054,0.000075228905,0.00016683369],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.997167,0.0004420508,0.0006506091,0.00067153975,0.00021999997,0.0008488031],"domain_scores_gemma":[0.9987938,0.00009999115,0.00015464732,0.0005456123,0.00009571155,0.00031022998],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00051404815,0.00039554632,0.00075195264,0.0016865064,0.00033758997,0.00006661906,0.00021983804,0.0005128009,0.000043193846],"category_scores_gemma":[0.00038403558,0.0004114594,0.00012400185,0.0012418998,0.0002200721,0.00040600606,0.00015283095,0.0007067287,0.000079843354],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033930747,0.000051766034,0.139378,0.000077894336,0.00015948633,0.00018438807,0.00052997796,0.0001233466,0.85696685,0.000008345432,0.000041470554,0.0021391746],"study_design_scores_gemma":[0.0038404574,0.0008919578,0.92955375,0.00016760951,0.000103515056,0.0003259812,0.0005396263,0.00033367256,0.061686605,0.000050496863,0.0020935864,0.0004127262],"about_ca_topic_score_codex":0.00047301003,"about_ca_topic_score_gemma":0.00009337286,"teacher_disagreement_score":0.7952802,"about_ca_system_score_codex":0.00071250595,"about_ca_system_score_gemma":0.0004455719,"threshold_uncertainty_score":0.9998337},"labels":[],"label_agreement":null},{"id":"W4378172923","doi":"10.1542/peds.2022-060097","title":"Shorter Versus Longer-term Antibiotic Treatments for Community-Acquired Pneumonia in Children: A Meta-analysis","year":2023,"lang":"en","type":"review","venue":"PEDIATRICS","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Impact","funders":"China Scholarship Council; McMaster University","keywords":"Medicine; Confidence interval; Antibiotics; Relative risk; Odds ratio; Meta-analysis; Pneumonia; Internal medicine; Community-acquired pneumonia; Adverse effect","score_opus":0.2673361274373721,"score_gpt":0.42851677845259906,"score_spread":0.16118065101522694,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4378172923","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.002715611,0.9923886,0.000022563652,0.00004076286,0.00044420033,0.0030712879,0.0009953979,0.00018752246,0.00013406949],"genre_scores_gemma":[0.0007175436,0.9953812,0.00004284989,0.00006372936,0.00044032893,0.00045601447,0.0019972294,0.00014132613,0.00075979554],"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99699265,0.00045607294,0.0010942217,0.00055467343,0.00035344297,0.0005489629],"domain_scores_gemma":[0.9971226,0.00093931914,0.00046328935,0.0011425257,0.0001014002,0.0002308719],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00055996526,0.00069858454,0.004935139,0.0021808026,0.00025925232,0.00005884129,0.00031813563,0.0005801718,0.00005002307],"category_scores_gemma":[0.0002173805,0.0005109733,0.0052534537,0.0036302195,0.000065703614,0.00006550866,0.00012915694,0.00065195607,0.0001684108],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009611428,0.003315998,0.03699527,0.025682354,0.81999344,0.00028427521,0.0004513116,0.000021192262,0.0000029311632,0.000014645595,0.00069852034,0.112443924],"study_design_scores_gemma":[0.0011978353,0.0004778379,0.004594059,0.00013552245,0.96424675,0.000038982947,0.000018883004,0.0000069962853,1.902186e-7,0.0000031423365,0.028804861,0.00047491348],"about_ca_topic_score_codex":0.00006206324,"about_ca_topic_score_gemma":0.00012043262,"teacher_disagreement_score":0.14425331,"about_ca_system_score_codex":0.0003158552,"about_ca_system_score_gemma":0.0003333618,"threshold_uncertainty_score":0.99973416},"labels":[],"label_agreement":null},{"id":"W4378472573","doi":"10.1371/journal.pgph.0001898","title":"Use of standardised patients to assess tuberculosis case management by private pharmacies in Patna, India: A repeat cross-sectional study","year":2023,"lang":"en","type":"article","venue":"PLOS Global Public Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Global Health Research; York University; University of Ottawa; McGill University","funders":"World Health Organization; World Bank Group; Bill and Melinda Gates Foundation","keywords":"Medicine; Pharmacy; Pharmacist; Cross-sectional study; Family medicine; Tuberculosis; Pediatrics","score_opus":0.13635063371554842,"score_gpt":0.40416168812975345,"score_spread":0.26781105441420505,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4378472573","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944468,0.000009630567,0.000020569587,0.0014909952,0.00025763313,0.0022030217,0.0011689158,0.00015437152,0.00024807442],"genre_scores_gemma":[0.9978726,0.00003677237,0.000030249073,0.001603833,0.000031973665,0.00022959415,0.00012382117,0.00001772575,0.000053419888],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99718434,0.00026219073,0.0007401458,0.00043798087,0.0008019508,0.000573395],"domain_scores_gemma":[0.99863577,0.000058250924,0.0001454181,0.00033821468,0.00025817138,0.0005641512],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007786738,0.0001875469,0.0004006409,0.00038943236,0.00021790597,0.00010099974,0.00009427903,0.00006858907,0.000041797197],"category_scores_gemma":[0.0002785473,0.00016840958,0.00008275044,0.0019597323,0.000049153172,0.00026618285,0.00016626179,0.00019159092,0.00003164416],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006763914,0.002864098,0.9911944,0.00025123832,0.00024772482,0.00042444427,0.0003267207,0.000028581935,0.00006214151,0.00003694668,0.00319271,0.0013033263],"study_design_scores_gemma":[0.0024797928,0.00081586157,0.9878329,0.000042726195,0.000027886004,0.00004183499,0.00028593812,0.00004585472,0.000018640547,0.000005606042,0.008277968,0.00012498366],"about_ca_topic_score_codex":0.00043117855,"about_ca_topic_score_gemma":0.00010811611,"teacher_disagreement_score":0.005085258,"about_ca_system_score_codex":0.0010246966,"about_ca_system_score_gemma":0.00029184343,"threshold_uncertainty_score":0.68675435},"labels":[],"label_agreement":null},{"id":"W4380423035","doi":"10.1542/peds.2022-060428","title":"Safety and Tolerability of V114 Pneumococcal Vaccine in Infants: A Phase 3 Study","year":2023,"lang":"en","type":"article","venue":"PEDIATRICS","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"","keywords":"Medicine; Tolerability; Irritability; Adverse effect; Pneumococcal conjugate vaccine; Incidence (geometry); Vaccination; Streptococcus pneumoniae; Pediatrics; Serotype; Pneumococcal vaccine; Internal medicine; Immunology","score_opus":0.018403678016109558,"score_gpt":0.3320736628338109,"score_spread":0.31366998481770136,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4380423035","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99838036,0.000068738846,0.000014218269,0.00046927555,0.00014830804,0.00054222636,0.00002261709,0.0000686373,0.0002856154],"genre_scores_gemma":[0.999435,0.000260506,0.000007017192,0.000054459324,0.00014951096,0.000018404002,0.0000073787633,0.0000098250885,0.000057865465],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989757,0.000060680926,0.00042118036,0.00020389166,0.00016466757,0.00017385781],"domain_scores_gemma":[0.99935234,0.00017981982,0.00006697242,0.00022470439,0.00006963245,0.00010651129],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00049240957,0.00009796102,0.00032982705,0.0003364563,0.000045502176,0.000004740655,0.000040812007,0.000066060275,0.000027615064],"category_scores_gemma":[0.00048838346,0.00008194704,0.00004203365,0.0011757407,0.000022590522,0.00004939613,0.00006160087,0.00019342738,0.000014201766],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016821944,0.0011762555,0.9931051,0.00010117776,0.000011280755,0.000051943192,0.0005900672,0.000017893468,0.0023401203,0.0000070639376,0.00006193036,0.0023689088],"study_design_scores_gemma":[0.005237951,0.00092070265,0.9915495,0.000008022154,0.000085365195,0.0000118981925,0.00035642332,0.00026541203,0.0000376998,0.00003200758,0.001417941,0.00007709868],"about_ca_topic_score_codex":0.000043674958,"about_ca_topic_score_gemma":0.000053360553,"teacher_disagreement_score":0.0050697317,"about_ca_system_score_codex":0.000033574637,"about_ca_system_score_gemma":0.00008479637,"threshold_uncertainty_score":0.3341703},"labels":[],"label_agreement":null},{"id":"W4380569001","doi":"10.46747/cfp.6906e124","title":"Durée d’une antibiothérapie pour une pneumonie acquise dans la communauté chez l’enfant","year":2023,"lang":"fr","type":"article","venue":"Canadian Family Physician","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Humanities; Philosophy","score_opus":0.019162874255721385,"score_gpt":0.26415211211743483,"score_spread":0.24498923786171345,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4380569001","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5721989,0.0030961253,0.000025504993,0.038488664,0.004901255,0.0008155404,0.001144858,0.0004547772,0.37887436],"genre_scores_gemma":[0.92434907,0.0011724007,0.000012002974,0.06017148,0.0022652398,0.00004317341,0.0002998489,0.00023116406,0.011455643],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9956648,0.00036170823,0.0006388959,0.0007594944,0.00043510366,0.0021400368],"domain_scores_gemma":[0.9959183,0.00031591044,0.00019109281,0.0013400003,0.00017721977,0.0020574953],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004317864,0.0007232769,0.00089540065,0.0008355341,0.001048526,0.00015073837,0.0005673106,0.00058501965,0.000039981056],"category_scores_gemma":[0.0000635158,0.00079444115,0.00050264597,0.003734067,0.0010485773,0.00025844024,0.000109293476,0.0011130772,0.006800355],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003500775,0.0009926487,0.010210941,0.0006993098,0.0013978886,0.010750881,0.0074846647,0.0007311382,0.68602055,0.019371238,0.17588803,0.08641773],"study_design_scores_gemma":[0.0015561685,0.0002951133,0.34894627,0.0014423894,0.00047841048,0.00005936998,0.0078578545,0.0014116114,0.0013172908,0.0009310354,0.6347921,0.0009124035],"about_ca_topic_score_codex":0.111352615,"about_ca_topic_score_gemma":0.08075314,"teacher_disagreement_score":0.68470323,"about_ca_system_score_codex":0.0011781866,"about_ca_system_score_gemma":0.0033915406,"threshold_uncertainty_score":0.9994506},"labels":[],"label_agreement":null},{"id":"W4380575671","doi":"10.46747/cfp.6906400","title":"Antibiotic treatment duration for community-acquired pneumonia in children","year":2023,"lang":"en","type":"article","venue":"Canadian Family Physician","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Amoxicillin; Antibiotics; Community-acquired pneumonia; Pneumonia; Duration (music); Antibiotic resistance; Randomized controlled trial; Pediatrics; Intensive care medicine; Internal medicine","score_opus":0.03230729341524906,"score_gpt":0.2770095196711759,"score_spread":0.2447022262559268,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4380575671","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923392,0.000028628712,0.000004760923,0.0011843019,0.00014875355,0.0008454402,0.00013685306,0.00009684146,0.005215219],"genre_scores_gemma":[0.98635876,0.000020528292,0.000007973984,0.012711894,0.0001564571,0.000060960487,0.0004274751,0.000029916635,0.00022602476],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99916863,0.000059580154,0.00017421375,0.00015572946,0.000066795816,0.00037506642],"domain_scores_gemma":[0.9993277,0.00003880689,0.00003592249,0.00030630417,0.000039089504,0.0002521361],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000092204486,0.00014198919,0.0002256174,0.0004166349,0.00033425022,0.000021780246,0.00006515043,0.000079015044,6.8620875e-7],"category_scores_gemma":[0.000013556052,0.00013605031,0.00009795237,0.00058621925,0.000049442904,0.0000643003,0.0000068903014,0.00009658932,0.00013890964],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052438347,0.00074678427,0.22499932,0.00012670165,0.00045686375,0.00010901615,0.0014414175,0.0003292238,0.660659,0.0006834635,0.0067176735,0.103678115],"study_design_scores_gemma":[0.0011968485,0.0004674764,0.9826166,0.0000632612,0.00005802616,0.0000035085545,0.00044794023,0.0003783152,0.001204881,0.000118195596,0.0132853445,0.0001596188],"about_ca_topic_score_codex":0.016557062,"about_ca_topic_score_gemma":0.037559908,"teacher_disagreement_score":0.7576173,"about_ca_system_score_codex":0.00050076854,"about_ca_system_score_gemma":0.00041491856,"threshold_uncertainty_score":0.9899918},"labels":[],"label_agreement":null},{"id":"W4381251839","doi":"10.1016/j.celrep.2023.112648","title":"Polysialylation controls immune function of myeloid cells in murine model of pneumococcal pneumonia","year":2023,"lang":"en","type":"article","venue":"Cell Reports","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Office of Research Infrastructure Programs, National Institutes of Health; National Institute of General Medical Sciences; National Institutes of Health; National Cancer Institute; Fonds de recherche du Québec – Nature et technologies; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; School of Medicine, University of Maryland","keywords":"Immune system; Myeloid; Biology; Adoptive cell transfer; Immunology; Sialic acid; Pneumonia; Streptococcus pneumoniae; Bone marrow; Cell biology; T cell; Microbiology; Medicine; Internal medicine","score_opus":0.014696676667829906,"score_gpt":0.24618869469835197,"score_spread":0.23149201803052208,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4381251839","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950189,0.00005468515,0.00027009184,0.00012197993,0.00035543897,0.0004297082,0.0000054371535,0.00007161498,0.0036721432],"genre_scores_gemma":[0.9981606,0.000048594873,0.000018427665,0.000027507704,0.00005332634,0.000029579132,0.000032139535,0.000022294222,0.0016075576],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983525,0.000034177046,0.0009006614,0.0002425505,0.00026291155,0.0002071586],"domain_scores_gemma":[0.9988896,0.000049271548,0.00044097326,0.00039432876,0.0001476312,0.00007817098],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038678362,0.00013480154,0.00045693433,0.000422941,0.000035221754,0.000004083566,0.000032719054,0.0001346687,0.0000332489],"category_scores_gemma":[0.00006704089,0.00012245291,0.00017689599,0.0005762702,0.00006319766,0.00007663855,0.000031766725,0.00016929393,0.00001511281],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000060513725,0.00021280789,0.026907895,0.0001455049,0.000024157902,0.00011148775,0.000097512435,0.01256072,0.9593803,0.0000139904305,0.000020995556,0.00046411288],"study_design_scores_gemma":[0.0009850757,0.00030123128,0.3450027,0.00009927741,0.00013486684,0.000052558942,0.00006538553,0.012887415,0.63958293,0.0002730384,0.0004831569,0.00013235548],"about_ca_topic_score_codex":0.000053433298,"about_ca_topic_score_gemma":0.000009348185,"teacher_disagreement_score":0.3197974,"about_ca_system_score_codex":0.00004707323,"about_ca_system_score_gemma":0.0001633702,"threshold_uncertainty_score":0.49934846},"labels":[],"label_agreement":null},{"id":"W4381730539","doi":"10.1093/cid/ciad385","title":"Management of Pediatric Pneumonia: A Decade After the Pediatric Infectious Diseases Society and Infectious Diseases Society of America Guideline","year":2023,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Center for Advancing Translational Sciences; Agency for Healthcare Research and Quality; National Institutes of Health; Pfizer","keywords":"Medicine; Guideline; Pediatric Infectious Disease; Pandemic; Pneumonia; Pediatrics; Infectious disease (medical specialty); Quarter (Canadian coin); Medical prescription; Community-acquired pneumonia; Coronavirus disease 2019 (COVID-19); Emergency department; Intensive care medicine; Emergency medicine; Family medicine; Disease; Internal medicine; Pathology","score_opus":0.021874008536180208,"score_gpt":0.3439602444505749,"score_spread":0.32208623591439467,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4381730539","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9899608,0.004492256,0.00034947367,0.0009848548,0.00092789665,0.0014039465,0.00063390686,0.0009146889,0.0003321582],"genre_scores_gemma":[0.95842797,0.03690668,0.0000186467,0.0020888546,0.0016848267,0.0004797265,0.000105387066,0.00010177426,0.00018616626],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.995227,0.0003492366,0.001966505,0.0009566836,0.00074982236,0.0007507745],"domain_scores_gemma":[0.9953248,0.0014976525,0.00085222383,0.0009859847,0.00051780813,0.00082156813],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00042263826,0.00062858034,0.0013099366,0.00031769648,0.0005072577,0.00006607706,0.0002487725,0.00033195602,0.00012297131],"category_scores_gemma":[0.0006076788,0.00046836497,0.0021510923,0.0026802327,0.0010992186,0.00022086945,0.0005510713,0.00063032494,0.00006467572],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000079379715,0.0024951901,0.9717371,0.0014948654,0.0011265114,0.00006739005,0.00009994106,0.00025092027,0.000027125614,0.000039153678,0.017423473,0.00515897],"study_design_scores_gemma":[0.0033886682,0.0011938916,0.9789303,0.0001000223,0.007636785,0.00005471075,0.0002737067,0.00067963626,0.0000027368978,0.00075908116,0.0064777294,0.0005027574],"about_ca_topic_score_codex":0.00004920608,"about_ca_topic_score_gemma":0.000007439836,"teacher_disagreement_score":0.032414425,"about_ca_system_score_codex":0.00012156551,"about_ca_system_score_gemma":0.0004213729,"threshold_uncertainty_score":0.9997768},"labels":[],"label_agreement":null},{"id":"W4381886257","doi":"10.2139/ssrn.4485625","title":"Impact of Pneumococcal Conjugate Vaccine Introduction on Pneumonia Incidence Rates in Children 2-59 Months of Age in Mongolia, 2015-2021: Population-Based Surveillance","year":2023,"lang":"en","type":"preprint","venue":"SSRN Electronic Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Pneumococcal conjugate vaccine; Incidence (geometry); Pneumonia; Medicine; Conjugate vaccine; Population; Conjugate; Vaccination; Pediatrics; Streptococcus pneumoniae; Virology; Environmental health; Immunology; Microbiology; Biology; Immunization; Mathematics; Antibiotics; Internal medicine; Antigen","score_opus":0.00966514724887623,"score_gpt":0.3071634800306183,"score_spread":0.29749833278174204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4381886257","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964767,0.00055000646,0.00005784518,0.0014891826,0.0003949265,0.0009214782,0.000058888363,0.00003681454,0.0000141343535],"genre_scores_gemma":[0.99659425,0.0023220854,0.000008500303,0.000018231734,0.00062428863,0.00004214054,0.00022477828,0.0000722975,0.00009343362],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99554056,0.0004345093,0.0014541157,0.0006046263,0.00051973504,0.0014464624],"domain_scores_gemma":[0.9977438,0.00017538872,0.0010380772,0.0006180463,0.0002773515,0.000147324],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0022230148,0.0004850255,0.0012753693,0.001546148,0.000073118135,0.000026494808,0.00030612684,0.0004331541,0.00003500382],"category_scores_gemma":[0.0006007421,0.00041930305,0.00048522206,0.00089604827,0.00006552133,0.00010900888,0.0001005614,0.004759135,0.0000118996995],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044556067,0.00041029736,0.9105094,0.000073701114,0.0003159682,0.000026653708,0.000049604445,0.064570695,0.022893207,0.00010973221,0.000020339136,0.0005748457],"study_design_scores_gemma":[0.0021980586,0.0014233512,0.9895653,0.00053041044,0.00007330798,0.00017515128,0.000041467505,0.0010046818,0.00041412696,0.004272411,0.0000039987112,0.00029772858],"about_ca_topic_score_codex":0.006759987,"about_ca_topic_score_gemma":0.01414273,"teacher_disagreement_score":0.07905591,"about_ca_system_score_codex":0.0026845941,"about_ca_system_score_gemma":0.003944364,"threshold_uncertainty_score":0.9998541},"labels":[],"label_agreement":null},{"id":"W4381890136","doi":"10.1101/2023.06.21.545950","title":"Structural Elucidation of Intact Rough-Type Lipopolysaccharides using Field Asymmetric Ion Mobility Spectrometry and Kendrick Mass Defect Plots","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome British Columbia; University of Victoria","funders":"National Institutes of Health; Genome British Columbia","keywords":"Ion-mobility spectrometry; Chemistry; Mass spectrometry; Tandem mass spectrometry; Fractionation; Chromatography; Analytical Chemistry (journal)","score_opus":0.032448757814442356,"score_gpt":0.2767906986992034,"score_spread":0.24434194088476108,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4381890136","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950435,0.00060989853,0.0009762701,0.0001386117,0.0019401965,0.00083755323,0.0000751248,0.00037216276,0.00000665958],"genre_scores_gemma":[0.9973586,0.00034925752,0.0015337433,0.00009995343,0.00051481376,0.000030070343,9.5223544e-7,0.00010885809,0.0000037540237],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9972495,0.00015824173,0.00073540775,0.00092292967,0.0004720716,0.00046185745],"domain_scores_gemma":[0.9973577,0.00024988217,0.00055419566,0.0010209207,0.0005465574,0.00027071827],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00058081164,0.0005105224,0.00086576695,0.0012075395,0.00019200421,0.00009557255,0.0002083896,0.00068712427,0.000034340712],"category_scores_gemma":[0.0013116621,0.00049518235,0.00027309114,0.0020135043,0.00012617983,0.00018802658,0.0003103374,0.0010564617,0.000015693744],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059132046,0.000074458876,0.21983102,0.0008507089,0.00029520874,0.00003157965,0.000008613822,0.000108803804,0.7786511,0.000059513353,0.000023655519,0.0000062009963],"study_design_scores_gemma":[0.00047010227,0.00034712665,0.5630016,0.00046514167,0.0005000134,3.3061735e-7,0.0000063729253,0.0014703444,0.4332384,0.000011094314,0.00006587912,0.0004236116],"about_ca_topic_score_codex":0.0003770953,"about_ca_topic_score_gemma":0.0000053058916,"teacher_disagreement_score":0.3454127,"about_ca_system_score_codex":0.0004128675,"about_ca_system_score_gemma":0.00055860257,"threshold_uncertainty_score":0.99974996},"labels":[],"label_agreement":null},{"id":"W4382281089","doi":"10.21203/rs.3.rs-3097836/v1","title":"Streptococcus Pneumoniae-Associated Hemolytic Uremic Syndrome Canadian Immunization Monitoring Program ACTive National Pediatric Surveillance (1991-2019)","year":2023,"lang":"en","type":"preprint","venue":"Research Square","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dalhousie University; SickKids Foundation; University of Manitoba; Children's Hospital of Eastern Ontario; University of Calgary","funders":"IWK Health Centre; Hospital for Sick Children; Michael Smith Health Research BC; BC Children's Hospital; Public Health Agency of Canada; Children's Hospital Foundation; Public Health Agency","keywords":"Medicine; Streptococcus pneumoniae; Epidemiology; Pneumonia; Pediatrics; Serotype; Pneumococcal disease; Internal medicine; Surgery; Immunology; Antibiotics; Biology; Microbiology","score_opus":0.08644666066899544,"score_gpt":0.41447777779219713,"score_spread":0.3280311171232017,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4382281089","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9885393,0.00033602552,0.0000021740336,0.0019943502,0.0012461061,0.0047775498,0.0011640335,0.0007525915,0.001187892],"genre_scores_gemma":[0.99224126,0.00079534086,0.00001137374,0.000022651235,0.0007611542,0.0016214892,0.0029216835,0.00015851232,0.001466507],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99412316,0.0006835007,0.0006045052,0.0009515017,0.0022680375,0.0013692921],"domain_scores_gemma":[0.9944881,0.00058225496,0.00024497163,0.00075450406,0.003097235,0.00083290756],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0017714987,0.00045933944,0.000670037,0.0025452524,0.00084407424,0.00022878627,0.00046013185,0.00095220184,0.00006821634],"category_scores_gemma":[0.0029606048,0.00046869848,0.00030075826,0.0028302295,0.00016016941,0.00013112384,0.00037415916,0.0036684645,0.0004572711],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":true,"study_design_scores_codex":[0.000028812145,0.0006267869,0.98920226,0.0012709707,0.0004968151,0.000705326,0.00036265107,0.001247228,0.0014312824,0.000023143984,0.002701379,0.0019033661],"study_design_scores_gemma":[0.0006760711,0.00046504446,0.9945447,0.0009530413,0.00006318461,0.000049299608,0.0002203453,0.00064134033,0.000079886755,0.0002484384,0.0016317011,0.00042697147],"about_ca_topic_score_codex":0.028487409,"about_ca_topic_score_gemma":0.016553607,"teacher_disagreement_score":0.011933803,"about_ca_system_score_codex":0.005014995,"about_ca_system_score_gemma":0.006115254,"threshold_uncertainty_score":0.9997765},"labels":[],"label_agreement":null},{"id":"W4382285093","doi":"10.2139/ssrn.4488943","title":"Changes in Pneumococcal Carriage in Hospitalised Children 2-59 Months of Age in Mongolia Following Pneumococcal Conjugate Vaccine Introduction","year":2023,"lang":"en","type":"preprint","venue":"SSRN Electronic Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Carriage; Pneumococcal conjugate vaccine; Medicine; Pediatrics; Pneumococcal vaccine; Streptococcus pneumoniae; Biology; Microbiology","score_opus":0.010767785315398638,"score_gpt":0.2706424311318355,"score_spread":0.2598746458164369,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4382285093","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99033403,0.0010448098,0.000027824879,0.005355732,0.001480605,0.00158038,0.000022159958,0.00008482196,0.000069652444],"genre_scores_gemma":[0.9931287,0.0047054878,0.000008385406,0.00004833274,0.00141171,0.00016739503,0.00012680728,0.00012114421,0.0002820422],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9942915,0.00039283393,0.0014078668,0.0008395841,0.00052400626,0.0025442115],"domain_scores_gemma":[0.9984822,0.00007674734,0.0005536041,0.0005897236,0.00010025195,0.0001974481],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0027724523,0.000607068,0.0015443352,0.002278476,0.00008833034,0.000049968734,0.0003917924,0.00071373786,0.00001886781],"category_scores_gemma":[0.00037382383,0.00058337726,0.0004915923,0.0010664224,0.000066927976,0.00015893496,0.00027652312,0.008419037,0.000012353568],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034987714,0.0007060823,0.90435076,0.00019187109,0.0006335313,0.0005916439,0.0010015585,0.003692121,0.08634895,0.00047234906,0.000026613528,0.0016346668],"study_design_scores_gemma":[0.0054539726,0.00090648304,0.98083633,0.00095062517,0.00022544607,0.00045143784,0.0009051486,0.00017276702,0.0009942744,0.0084858285,0.000075064956,0.00054262107],"about_ca_topic_score_codex":0.0015592689,"about_ca_topic_score_gemma":0.058993965,"teacher_disagreement_score":0.08535468,"about_ca_system_score_codex":0.0028516734,"about_ca_system_score_gemma":0.0022710185,"threshold_uncertainty_score":0.99966174},"labels":[],"label_agreement":null},{"id":"W4382814878","doi":"10.5114/pja.2023.129082","title":"The effectiveness of new antibiotics in the treatment of community-acquired pneumonia","year":2023,"lang":"en","type":"article","venue":"Alergologia Polska - Polish Journal of Allergology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Community-acquired pneumonia; Antibiotics; Pneumonia; Medicine; Internal medicine; Microbiology; Biology","score_opus":0.04917519927394085,"score_gpt":0.3406717798907961,"score_spread":0.29149658061685524,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4382814878","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994511,0.0005252139,0.000010727199,0.003264235,0.00063402456,0.00033346264,0.000009572695,0.000016951244,0.00069481693],"genre_scores_gemma":[0.9963293,0.0031180356,0.000017513377,0.00022935183,0.0001732175,0.0000024285323,0.0000067156325,0.000018669514,0.00010473262],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9963301,0.0020370896,0.00087203144,0.000099749974,0.00026253646,0.00039852055],"domain_scores_gemma":[0.994862,0.0036570474,0.0005958694,0.0005401734,0.00023505476,0.00010981782],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018683056,0.00021050699,0.00078098814,0.000388376,0.00019472501,0.000011200877,0.0004858507,0.00022363875,0.000010134018],"category_scores_gemma":[0.0006553547,0.000110510104,0.0003440638,0.00075335504,0.00064846576,0.00006299256,0.000057577654,0.00040128618,0.000007717742],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0043071,0.005349644,0.62857276,0.00041383406,0.003219811,0.0010410699,0.015014,0.0010017802,0.31817523,0.0060290997,0.0070124012,0.009863301],"study_design_scores_gemma":[0.0028369129,0.0074332054,0.9720154,0.00013705368,0.00017265746,0.00102521,0.002264695,0.000008593766,0.007264548,0.0010132135,0.0057362616,0.00009227729],"about_ca_topic_score_codex":0.00053650927,"about_ca_topic_score_gemma":0.0003152899,"teacher_disagreement_score":0.34344265,"about_ca_system_score_codex":0.00010300371,"about_ca_system_score_gemma":0.00042369287,"threshold_uncertainty_score":0.45064715},"labels":[],"label_agreement":null},{"id":"W4383187643","doi":"10.1186/s13073-023-01200-8","title":"Phylogenomic insights into evolutionary trajectories of multidrug resistant S. pneumoniae CC271 over a period of 14 years in China","year":2023,"lang":"en","type":"article","venue":"Genome Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Chinese Academy of Sciences","keywords":"Phylogenetic tree; Biology; Streptococcus pneumoniae; Multiple drug resistance; Genetics; Population; clone (Java method); Multilocus sequence typing; China; Evolutionary biology; Phylogenetics; Gene; Drug resistance; Genotype; Demography; Geography; Antibiotics","score_opus":0.010848036403623638,"score_gpt":0.2617295564075089,"score_spread":0.25088152000388525,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4383187643","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957249,0.001548839,0.000006324438,0.0011262362,0.0003368738,0.00038273507,0.000019856501,0.000060837505,0.00079338375],"genre_scores_gemma":[0.99872935,0.0004254828,0.00003181655,0.00009029221,0.00022190838,0.000030102607,0.000050158094,0.000030353083,0.00039055294],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983156,0.00007481299,0.0006561987,0.00029309845,0.0003897562,0.0002705465],"domain_scores_gemma":[0.9991402,0.00006774244,0.00017446047,0.00039200607,0.00009192485,0.0001336764],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002675496,0.00019048768,0.00065583107,0.0008470604,0.000063961386,0.0000017691926,0.00012683809,0.00012069066,0.00011417419],"category_scores_gemma":[0.00019419368,0.00015230694,0.000112619644,0.0012012268,0.00045313823,0.000049481674,0.00006312402,0.00024923525,0.000023708493],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014352081,0.00016122355,0.054251507,0.00030668697,0.00008007577,0.00016513864,0.012620068,0.00008533199,0.93160826,0.00010578908,0.00015836142,0.00031406368],"study_design_scores_gemma":[0.0023091014,0.00077282207,0.98469734,0.00027577163,0.00007610036,0.000026619146,0.00083248375,0.00013654614,0.00082488987,0.00025215236,0.009665288,0.00013088666],"about_ca_topic_score_codex":0.00046060528,"about_ca_topic_score_gemma":0.00018268079,"teacher_disagreement_score":0.93078333,"about_ca_system_score_codex":0.00016705322,"about_ca_system_score_gemma":0.00022259247,"threshold_uncertainty_score":0.62108964},"labels":[],"label_agreement":null},{"id":"W4383302512","doi":"10.1128/aac.00395-23","title":"New Resistance Mutations Linked to Decreased Susceptibility to Solithromycin in Streptococcus pneumoniae Revealed by Chemogenomic Screens","year":2023,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research; Alliance de recherche numérique du Canada; Government of Canada","keywords":"Streptococcus pneumoniae; Mutagenesis; Microbiology; Biology; Mutant; Drug resistance; Telithromycin; Mutation; Streptococcus; Genetics; Gene; Bacteria; Antibiotics","score_opus":0.015454670617423361,"score_gpt":0.29181317379915395,"score_spread":0.2763585031817306,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4383302512","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9675787,0.0000062551926,0.00015881361,0.030519744,0.000081631806,0.0012236468,0.000094394396,0.00013302827,0.00020376881],"genre_scores_gemma":[0.9778319,0.00011826801,0.00036409445,0.017660696,0.000120532815,0.00004002605,0.00009139556,0.00004737417,0.0037256845],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99846005,0.00004153873,0.0003843786,0.0005375478,0.00013730551,0.0004391981],"domain_scores_gemma":[0.99902827,0.00003371999,0.000059392765,0.0003530887,0.00006243716,0.00046309765],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017131414,0.00023673807,0.0003878273,0.00024004054,0.00015887435,0.000044135977,0.00010954903,0.00012702987,0.00013511493],"category_scores_gemma":[0.000046966852,0.00022631574,0.00009853002,0.0008408036,0.000042667933,0.000055309607,0.000039548584,0.000164625,0.00015330463],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012464004,0.00016541565,0.21232007,0.000045128338,0.00004648746,0.000022763608,0.00074678566,0.000013219948,0.63658214,0.0000047581198,0.1478767,0.0020518997],"study_design_scores_gemma":[0.0027186677,0.00017359645,0.90463173,0.0001718551,0.000028746648,0.000006345376,0.00012839418,0.000019094641,0.0087579675,0.000035709403,0.08304472,0.0002831668],"about_ca_topic_score_codex":0.00025312975,"about_ca_topic_score_gemma":0.00091120583,"teacher_disagreement_score":0.69231164,"about_ca_system_score_codex":0.00011606525,"about_ca_system_score_gemma":0.00016135501,"threshold_uncertainty_score":0.92288876},"labels":[],"label_agreement":null},{"id":"W4383555508","doi":"10.1177/17151635231176498","title":"Projected health and economic outcomes of extending public funding of pharmacy services to include administration of Pneu23 and Td/Tdap immunizations by pharmacy practitioners in New Brunswick","year":2023,"lang":"en","type":"article","venue":"Canadian Pharmacists Journal / Revue des Pharmaciens du Canada","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"University of New Brunswick","funders":"Canadian Institutes of Health Research; Nova Scotia Department of Health and Wellness; New Brunswick Innovation Foundation; Department of Health, Western Cape Government; Nova Scotia Health Research Foundation; Fondation de la recherche en santé du Nouveau-Brunswick","keywords":"Pharmacy; Medicine; Legislation; Health care; Population; Public health; Immunization; Family medicine; Nursing; Environmental health; Economic growth; Political science; Economics","score_opus":0.0585472662691076,"score_gpt":0.35504163661885096,"score_spread":0.29649437034974335,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4383555508","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99521124,0.00069321616,0.000021230626,0.0026867865,0.0004143222,0.0005522649,0.0003243192,0.000019177352,0.00007743507],"genre_scores_gemma":[0.9929696,0.005644757,0.00006445195,0.00096191803,0.00009366818,0.000008434655,0.00007660235,0.000034062436,0.00014653437],"study_design_codex":"observational","study_design_gemma":"case_report","domain_scores_codex":[0.997886,0.00014997994,0.0009307846,0.00026468208,0.00023469179,0.00053387525],"domain_scores_gemma":[0.9971411,0.00013034268,0.00056700135,0.00014012458,0.00024055032,0.0017808819],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005436916,0.00023469613,0.0005388451,0.0012967412,0.00034400116,0.00005294712,0.00017608868,0.000033194945,0.00011362479],"category_scores_gemma":[0.00013173118,0.00025188838,0.0000666667,0.0011189487,0.00012663424,0.00049564766,0.00004816376,0.00034008492,0.0000013618285],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030586365,0.00018998019,0.78193885,0.0022596007,0.00057261396,0.001684279,0.0063146874,0.000623866,0.17383708,0.00020055193,0.0050000832,0.02707254],"study_design_scores_gemma":[0.060631108,0.0021354575,0.08917633,0.001850171,0.001909882,0.33494475,0.00400978,0.04448598,0.13489962,0.00019822079,0.32146257,0.0042961272],"about_ca_topic_score_codex":0.108752385,"about_ca_topic_score_gemma":0.20987378,"teacher_disagreement_score":0.69276255,"about_ca_system_score_codex":0.0010128433,"about_ca_system_score_gemma":0.015409053,"threshold_uncertainty_score":0.9999933},"labels":[],"label_agreement":null},{"id":"W4385275746","doi":"10.2139/ssrn.4519527","title":"Long-Term Impact of Pneumococcal Conjugate Vaccines from National, Active, Laboratory-Based Surveillance of Invasive Pneumococcal Disease, South Africa, 2005-2019","year":2023,"lang":"en","type":"preprint","venue":"SSRN Electronic Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Pneumococcal disease; Pneumococcal conjugate vaccine; Medicine; Term (time); Disease; Virology; Streptococcus pneumoniae; Microbiology; Biology; Internal medicine; Antibiotics","score_opus":0.022587979261916344,"score_gpt":0.30193434565541677,"score_spread":0.2793463663935004,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4385275746","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9912708,0.0020898725,0.00037629568,0.00063664,0.00060698856,0.0008367889,0.004001242,0.00010173369,0.000079681464],"genre_scores_gemma":[0.99588966,0.002278895,0.000009719406,0.000040580842,0.00076732197,0.00005753602,0.00056350895,0.0001276343,0.00026512222],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9946711,0.00043685417,0.0012172844,0.00071129267,0.0010176162,0.0019458659],"domain_scores_gemma":[0.99490744,0.00054546725,0.0016247708,0.00066507066,0.0017035492,0.00055371],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0012229714,0.0006858626,0.0014126049,0.000831226,0.00017865023,0.000051624556,0.0005210909,0.00048907293,0.00014029726],"category_scores_gemma":[0.00091639213,0.0005676065,0.0011665215,0.00058240903,0.00022707645,0.00014245568,0.00021408095,0.004095423,0.00005091415],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015771977,0.0008408243,0.87125945,0.00039280648,0.0040252144,0.000092770846,0.00020779825,0.004485316,0.11654454,0.00023471755,0.00021770186,0.00012169051],"study_design_scores_gemma":[0.0029833263,0.00083710434,0.9853128,0.0008034235,0.0005713762,0.000041010106,0.00012766475,0.00015059659,0.0015110245,0.0070704054,0.000051431718,0.0005398312],"about_ca_topic_score_codex":0.0001275022,"about_ca_topic_score_gemma":0.0007510115,"teacher_disagreement_score":0.11503351,"about_ca_system_score_codex":0.0021910632,"about_ca_system_score_gemma":0.038652323,"threshold_uncertainty_score":0.99967754},"labels":[],"label_agreement":null},{"id":"W4385374720","doi":"10.1016/j.vaccine.2023.07.049","title":"Effectiveness of thirteen-valent pneumococcal conjugate vaccine to prevent serotype 3 invasive pneumococcal disease in Quebec in children, Canada","year":2023,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Institut universitaire de cardiologie et de pneumologie de Québec; Centre Hospitalier de l’Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine; Centre hospitalier universitaire de Québec; Institut National de Santé Publique du Québec; Université Laval; Université de Montréal","funders":"","keywords":"Pneumococcal conjugate vaccine; Serotype; Pneumococcal disease; Medicine; Cohort; Logistic regression; Streptococcus pneumoniae; Pediatrics; Virology; Internal medicine; Biology; Microbiology; Antibiotics","score_opus":0.007320353414281755,"score_gpt":0.25306507429727754,"score_spread":0.2457447208829958,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4385374720","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99447095,0.000097978314,0.0000031395946,0.0025351557,0.0002793229,0.002401595,0.00007625101,0.00007918114,0.00005642315],"genre_scores_gemma":[0.9987695,0.0000790465,0.0000025320094,0.00027488437,0.000094803865,0.00030910553,0.00010632356,0.000045504163,0.0003182565],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9975975,0.00029669137,0.00067245495,0.00054352597,0.000343067,0.0005467562],"domain_scores_gemma":[0.9984425,0.0003023016,0.00011304576,0.0005061141,0.00013581854,0.00050022907],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00047922466,0.00032732298,0.0007497938,0.0006461098,0.00005836554,0.000010463667,0.00017940355,0.000110916924,0.00006354366],"category_scores_gemma":[0.0004424816,0.00028371584,0.000120691424,0.0016975976,0.000010682095,0.000092480404,0.00015484628,0.0003844157,0.00005821434],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006495443,0.0005158547,0.87032205,0.00047303652,0.00008281242,0.00032301102,0.00008742093,0.0023830018,0.124593824,0.000038075184,0.00027171173,0.00025966304],"study_design_scores_gemma":[0.0032988943,0.00039154608,0.9807443,0.0009745934,0.00007605201,0.00002137794,0.000039610477,0.00009380577,0.01364159,0.000041676754,0.00041580576,0.00026075434],"about_ca_topic_score_codex":0.3787571,"about_ca_topic_score_gemma":0.7960183,"teacher_disagreement_score":0.4172612,"about_ca_system_score_codex":0.0005751889,"about_ca_system_score_gemma":0.0015636561,"threshold_uncertainty_score":0.9999615},"labels":[],"label_agreement":null},{"id":"W4385378217","doi":"10.1016/j.hlc.2023.06.550","title":"Systemic Inflammation in CAD Patients: Pneumonia Begets Adverse Cardiac Events","year":2023,"lang":"en","type":"article","venue":"Heart Lung and Circulation","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Mace; Medicine; Myocardial infarction; Coronary artery disease; Internal medicine; Cardiology; Heart failure; Pneumonia; Inflammation; Stroke (engine); Percutaneous coronary intervention","score_opus":0.009487364588947512,"score_gpt":0.2608205034454901,"score_spread":0.2513331388565426,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4385378217","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99849856,0.000060172522,0.000008501077,0.00034326568,0.00029978628,0.0004444416,0.0000055196697,0.000103989965,0.00023578985],"genre_scores_gemma":[0.99958587,0.00004322613,0.0000019030213,0.000056767556,0.00009290623,0.000046098878,0.00008608089,0.0000111997515,0.000075927615],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99925417,0.000062750296,0.00021543901,0.00015966185,0.00016236836,0.00014559517],"domain_scores_gemma":[0.99969417,0.000024314415,0.000041374515,0.00011353843,0.00005984607,0.00006674663],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016587402,0.000080360755,0.00015589962,0.00022331218,0.000096493706,0.0000059292634,0.000011257243,0.000089484565,0.0000042232878],"category_scores_gemma":[0.000045746394,0.00007767874,0.00004964556,0.00032308575,0.000011859556,0.00011972375,0.000010716777,0.0000957658,0.000080128084],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000052524533,0.000017541506,0.9736148,0.00012421815,0.000012925164,0.0000028115792,0.00028503189,0.00041782908,0.024716772,0.00003774676,0.000055681354,0.00070935505],"study_design_scores_gemma":[0.00058216933,0.00003141582,0.9958334,0.00019966601,0.00003340299,0.000011588913,0.00007036647,0.001888862,0.00006831224,0.00003015662,0.0011761074,0.000074543925],"about_ca_topic_score_codex":0.000031611202,"about_ca_topic_score_gemma":0.00000894894,"teacher_disagreement_score":0.02464846,"about_ca_system_score_codex":0.000102043836,"about_ca_system_score_gemma":0.000033049855,"threshold_uncertainty_score":0.3167647},"labels":[],"label_agreement":null},{"id":"W4385452189","doi":"10.1371/journal.pgph.0002216","title":"Derivation and validation of a clinical prediction model for risk-stratification of children hospitalized with severe pneumonia in Bangladesh","year":2023,"lang":"en","type":"article","venue":"PLOS Global Public Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Global Affairs Canada; Department for International Development; International Centre for Diarrhoeal Disease Research, Bangladesh; Styrelsen för Internationellt Utvecklingssamarbete","keywords":"Medicine; Pneumonia; Severe Acute Malnutrition; Malnutrition; Pediatrics; Cohort; Under-five; Emergency medicine; Intensive care medicine; Internal medicine","score_opus":0.06850145013014544,"score_gpt":0.35594176417279605,"score_spread":0.2874403140426506,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4385452189","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9903141,0.000011629097,0.0037931583,0.004034873,0.000037980826,0.0012649617,0.0003817319,0.00007870102,0.000082825536],"genre_scores_gemma":[0.9985922,0.00014418246,0.0005689773,0.00011824777,0.00004275912,0.00008638001,0.00042932524,0.000009859246,0.000008046444],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984528,0.0001310389,0.0007423843,0.0002412151,0.0002373326,0.00019525063],"domain_scores_gemma":[0.9988954,0.000061042876,0.0004680261,0.00018123807,0.00024193451,0.00015235876],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009484691,0.00009388012,0.00035040086,0.00014716522,0.000067924164,0.000010527493,0.000039915998,0.000119498305,0.0000017374854],"category_scores_gemma":[0.0005194345,0.00007907243,0.000050371033,0.00065811194,0.00006849393,0.00017925774,0.000011989151,0.00011348563,8.125205e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008524877,0.00039291888,0.9932617,0.00021118132,0.00006697989,1.4958017e-7,0.00020623373,0.000525876,0.00041695335,0.00045954838,0.00012181538,0.0042513963],"study_design_scores_gemma":[0.0021559484,0.00081820897,0.9177333,0.000090600726,0.000040819144,0.000008176826,0.00004834498,0.07864908,0.00006327377,0.00031507388,0.00002314693,0.000053994954],"about_ca_topic_score_codex":0.00010276893,"about_ca_topic_score_gemma":0.00004679667,"teacher_disagreement_score":0.078123204,"about_ca_system_score_codex":0.000093046736,"about_ca_system_score_gemma":0.0007274694,"threshold_uncertainty_score":0.32244802},"labels":[],"label_agreement":null},{"id":"W4385486620","doi":"10.1538/expanim.23-0001","title":"Nucleic acid sensing Toll-like receptors 3 and 9 play complementary roles in the development of bacteremia after nasal colonization associated with influenza co-infection","year":2023,"lang":"en","type":"article","venue":"EXPERIMENTAL ANIMALS","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Tokyo; Wakayama Medical University; York University","keywords":"Bacteremia; Streptococcus pneumoniae; Immunology; Biology; Innate immune system; TLR9; Sepsis; Pathogen; Microbiology; Immune system; Colonization; Virology; Antibiotics; Gene; Gene expression; DNA methylation","score_opus":0.02865103175248061,"score_gpt":0.31276790535208593,"score_spread":0.2841168735996053,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4385486620","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99914265,0.000053209296,0.0000075410408,0.00008418526,0.00008347481,0.00037997926,0.0000072607227,0.000059006095,0.00018271495],"genre_scores_gemma":[0.9993375,0.000004170952,0.000091744485,0.00041228638,0.00002748351,0.0000314603,0.000062691484,0.000016906555,0.000015770811],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99907744,0.00009233015,0.00028609877,0.00016931635,0.00020215196,0.00017263525],"domain_scores_gemma":[0.9997098,0.000042717504,0.000091638576,0.00007827287,0.000033175686,0.000044406817],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021937593,0.00013051694,0.00018876976,0.0001474297,0.0001541337,0.000020518699,0.000026776685,0.000059689286,0.00006723785],"category_scores_gemma":[0.000013888324,0.00009295959,0.000026479496,0.00033411596,0.00007732595,0.000082956,0.000030516978,0.0001023689,0.000012023717],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018360234,0.0001369339,0.4474606,0.000014551247,0.000067901536,0.00001733198,0.009387618,0.000003619426,0.5422954,0.000005912727,0.00020019342,0.00022635903],"study_design_scores_gemma":[0.0012388236,0.0004633382,0.83779514,0.00016143544,0.000021985652,0.000028456308,0.00305254,0.00004574553,0.15479779,0.0000023307473,0.002274413,0.00011798664],"about_ca_topic_score_codex":0.000021858683,"about_ca_topic_score_gemma":0.00021751894,"teacher_disagreement_score":0.39033458,"about_ca_system_score_codex":0.00016325348,"about_ca_system_score_gemma":0.0000665621,"threshold_uncertainty_score":0.3790782},"labels":[],"label_agreement":null},{"id":"W4385546586","doi":"10.1016/j.ijantimicag.2023.106942","title":"Macrolides for better resolution of community-acquired pneumonia: A global meta-analysis of clinical outcomes with focus on microbial aetiology","year":2023,"lang":"en","type":"review","venue":"International Journal of Antimicrobial Agents","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Streptococcus pneumoniae; Community-acquired pneumonia; Odds ratio; Pneumonia; Confidence interval; Internal medicine; Meta-analysis; Regimen; Medicine; Klebsiella pneumoniae; Etiology; Pathogen; Antibiotics; Microbiology; Immunology; Biology","score_opus":0.30106624303913104,"score_gpt":0.4915018394818742,"score_spread":0.19043559644274316,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4385546586","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.64572835,0.2524403,0.005307555,0.02662454,0.019879067,0.009845254,0.039084267,0.00023908945,0.0008515902],"genre_scores_gemma":[0.13517971,0.8544743,0.0017883416,0.0047866846,0.0017095282,0.00007721345,0.0012644082,0.000229115,0.00049069937],"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9950334,0.0007890845,0.0031735492,0.00023435644,0.0005298013,0.00023981334],"domain_scores_gemma":[0.9933472,0.0009464632,0.0038968604,0.000369386,0.0013203981,0.00011965837],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0013258164,0.00041050542,0.005676533,0.0011674525,0.000083738836,0.000023565131,0.0006591804,0.00042481537,0.000059559236],"category_scores_gemma":[0.00046664212,0.0002581674,0.0075858873,0.0006131429,0.00031740966,0.000074355215,0.00013548325,0.0006074764,0.000009703066],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018047007,0.0029358894,0.007989177,0.0027154407,0.9507013,0.00027062686,0.00010619239,0.00028982948,0.0005166213,0.000092840855,0.0052792314,0.027298184],"study_design_scores_gemma":[0.005782479,0.0030980243,0.021917766,0.0040031658,0.7485852,0.0011887612,0.000030039797,0.00001572636,0.000116603165,0.00009352153,0.21462844,0.0005402259],"about_ca_topic_score_codex":0.000093103925,"about_ca_topic_score_gemma":0.000111429654,"teacher_disagreement_score":0.602034,"about_ca_system_score_codex":0.00017470657,"about_ca_system_score_gemma":0.00048506493,"threshold_uncertainty_score":0.99998707},"labels":[],"label_agreement":null},{"id":"W4385620466","doi":"10.1016/j.vaccine.2023.08.001","title":"Distribution of serotypes causing invasive pneumococcal disease in older adults from high-income countries and impact of pediatric and adult vaccination policies","year":2023,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer","keywords":"Serotype; Pneumococcal disease; Medicine; Pneumococcal conjugate vaccine; Vaccination; Pediatrics; Streptococcus pneumoniae; Virology; Biology","score_opus":0.006617717146737714,"score_gpt":0.26836068739318825,"score_spread":0.26174297024645055,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4385620466","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99827546,0.00028519222,0.0000061830947,0.000644008,0.000059669685,0.00032750826,0.0003656901,0.000034105917,0.0000021856374],"genre_scores_gemma":[0.99851847,0.0011089275,0.0000020407645,0.000020903984,0.000111055335,0.000012838519,0.00020621254,0.000010442205,0.000009088386],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999245,0.00003450033,0.00028786677,0.00016524372,0.00012227958,0.00014513735],"domain_scores_gemma":[0.99929464,0.00015217786,0.00012771116,0.00012326748,0.00019249963,0.00010972701],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000069916445,0.00012122987,0.00028456218,0.00028782414,0.00004829308,0.000008545038,0.000021566115,0.000068382236,0.000020754345],"category_scores_gemma":[0.00027117095,0.00009511675,0.000043870197,0.0005380631,0.000013346776,0.00012042869,0.000042315696,0.00008509393,0.0000019100944],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024005793,0.00006303542,0.9943005,0.00034731717,0.000031928466,0.000015902617,0.00035863966,0.00005527777,0.0043813284,0.000039708182,0.000043226548,0.00012310866],"study_design_scores_gemma":[0.002332184,0.00021167134,0.99557155,0.00021746315,0.00013283991,0.000004573665,0.00008163354,0.0003045073,0.00096858945,0.00009011607,0.0000037171487,0.000081171864],"about_ca_topic_score_codex":0.0018026078,"about_ca_topic_score_gemma":0.00030899496,"teacher_disagreement_score":0.003412739,"about_ca_system_score_codex":0.00005828324,"about_ca_system_score_gemma":0.00010062917,"threshold_uncertainty_score":0.38787487},"labels":[],"label_agreement":null},{"id":"W4385767237","doi":"10.1016/j.chest.2023.08.008","title":"Comparative Effectiveness of First-Line and Alternative Antibiotic Regimens in Hospitalized Patients With Nonsevere Community-Acquired Pneumonia","year":2023,"lang":"en","type":"article","venue":"CHEST Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; St. Michael's Hospital; Queen's University","funders":"","keywords":"Medicine; Internal medicine; Community-acquired pneumonia; Antibiotics; Propensity score matching; Pneumonia; Retrospective cohort study; Cohort","score_opus":0.028828763871450055,"score_gpt":0.2973610855130007,"score_spread":0.26853232164155066,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4385767237","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989776,0.00003191034,0.000040075327,0.00017590972,0.000116448515,0.00037721952,0.000015008186,0.000024195304,0.00024165065],"genre_scores_gemma":[0.9997661,0.00008016237,0.000031223153,0.000029181469,0.000028893168,0.0000056808003,0.00001695994,0.000016286933,0.000025512154],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99883413,0.00037964288,0.0002639678,0.000120615216,0.00020096298,0.00020068316],"domain_scores_gemma":[0.9989276,0.0003581526,0.00018800069,0.00016655799,0.00022776198,0.00013190872],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047549474,0.00015781596,0.0005049118,0.00028132036,0.0002390432,0.000018330276,0.000076892706,0.00006302868,0.000006160606],"category_scores_gemma":[0.00009840092,0.00011351976,0.000053641925,0.00048422566,0.00023947054,0.0001180587,0.000048423746,0.00041861754,0.0000060578946],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044586134,0.00057374424,0.9894763,0.0003324281,0.00017632618,0.00009175346,0.002111975,0.00015954496,0.0065192976,0.0000064888854,0.000014198509,0.00009206046],"study_design_scores_gemma":[0.0059136534,0.0017154495,0.98644304,0.0012614306,0.00007253827,0.0001142011,0.00042047456,0.00012320981,0.0036582565,0.00007043524,0.0000877442,0.000119543954],"about_ca_topic_score_codex":0.0000411547,"about_ca_topic_score_gemma":0.000044366665,"teacher_disagreement_score":0.005467792,"about_ca_system_score_codex":0.00009111678,"about_ca_system_score_gemma":0.0000711122,"threshold_uncertainty_score":0.46292016},"labels":[],"label_agreement":null},{"id":"W4385840336","doi":"10.3390/vaccines11081369","title":"Estimating the Clinical and Economic Impact of Switching from the 13-Valent Pneumococcal Conjugate Vaccine (PCV13) to Higher-Valent Options in Greek Infants","year":2023,"lang":"en","type":"article","venue":"Vaccines","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer","keywords":"Pneumococcal conjugate vaccine; Medicine; Vaccination; Otitis; Serotype; Pneumococcal disease; Conjugate vaccine; Pneumonia; Pneumococcal pneumonia; Pediatrics; Disease; Intensive care medicine; Streptococcus pneumoniae; Internal medicine; Immunology; Immunization; Surgery; Antibiotics","score_opus":0.044301321552190985,"score_gpt":0.3742726428286977,"score_spread":0.32997132127650675,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4385840336","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9883531,0.00010956826,0.000016245398,0.010024295,0.0006885101,0.00059236353,0.000048988095,0.00007430533,0.000092621696],"genre_scores_gemma":[0.998561,0.00016014867,0.00005714032,0.00048669195,0.0005946767,0.00005246309,0.00001081067,0.000024438552,0.000052587267],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99840075,0.00014691695,0.0007307684,0.00031056165,0.000109942994,0.00030105378],"domain_scores_gemma":[0.9983079,0.00083762687,0.00015951191,0.0004487077,0.000046587385,0.00019970779],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007785776,0.00019329817,0.00043995856,0.00015098619,0.00018885292,0.000032955977,0.00016329621,0.00008808718,0.00007362285],"category_scores_gemma":[0.00041461154,0.0001022363,0.00019193726,0.00032856924,0.00002958442,0.00008503979,0.00016625742,0.00035339562,0.000091720765],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001037616,0.000060039354,0.9783398,0.00001957225,0.00014385511,0.000022899289,0.00039744584,0.0067878505,0.010068911,0.000022079868,0.0014285371,0.0026052347],"study_design_scores_gemma":[0.0014062937,0.00029209422,0.98809606,0.00017444509,0.00010084691,0.000040394352,0.00008508564,0.00879468,0.000053071228,0.0002089372,0.0006368686,0.00011125221],"about_ca_topic_score_codex":0.0015845961,"about_ca_topic_score_gemma":0.0010699291,"teacher_disagreement_score":0.010207941,"about_ca_system_score_codex":0.00007203325,"about_ca_system_score_gemma":0.0001869107,"threshold_uncertainty_score":0.41690755},"labels":[],"label_agreement":null},{"id":"W4386440427","doi":"10.9778/cmajo.20220193","title":"Identifying clusters of coexisting conditions and outcomes among adults admitted to hospital with community-acquired pneumonia: a multicentre cohort study","year":2023,"lang":"en","type":"article","venue":"CMAJ Open","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Public Health Ontario; St. Michael's Hospital","funders":"Natural Environment Research Council; Economic and Social Research Council; Medical Research Council; Canadian Thoracic Society; Public Health Agency; Directorate for Biological Sciences; Seqirus; Public Health Agency of Canada","keywords":"Medicine; Comorbidity; COPD; Community-acquired pneumonia; Internal medicine; Cohort; Diabetes mellitus; Pneumonia; Dementia; Population; Heart failure; Cohort study; Lung cancer; Disease","score_opus":0.03407321353581666,"score_gpt":0.34569694064429796,"score_spread":0.3116237271084813,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386440427","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99493974,0.0000026885264,0.000015306081,0.0004282037,0.0001347655,0.0037624817,0.000043070784,0.00012409121,0.0005496662],"genre_scores_gemma":[0.99889374,0.0000026552846,0.000054321463,0.00023047435,0.000015641246,0.0003045943,0.00006602309,0.00003138854,0.000401152],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99874616,0.00017551695,0.00034010885,0.00025274264,0.00023531227,0.0002501885],"domain_scores_gemma":[0.9987859,0.00022403387,0.00014000986,0.00044778833,0.00017306159,0.00022919339],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038260425,0.00017783833,0.0004925825,0.00021765062,0.0005529303,0.000085923115,0.00021201193,0.000054209446,0.00002080502],"category_scores_gemma":[0.00024420844,0.00014220171,0.00004891001,0.00059351866,0.00014460273,0.00021229617,0.00044569443,0.00021484868,0.00002760636],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000637724,0.0004837075,0.98667884,0.00010299032,0.00031618722,0.00008464961,0.010822472,0.000026095457,0.0012098433,0.0000031265538,0.00008254751,0.00012574297],"study_design_scores_gemma":[0.0031674982,0.00091252784,0.9587593,0.00050588156,0.0002577747,0.000014351132,0.035950564,0.00015495306,0.00007095864,0.00000286485,0.000041214793,0.00016209244],"about_ca_topic_score_codex":0.0034436833,"about_ca_topic_score_gemma":0.004014443,"teacher_disagreement_score":0.027919544,"about_ca_system_score_codex":0.000048649956,"about_ca_system_score_gemma":0.000058751364,"threshold_uncertainty_score":0.5798818},"labels":[],"label_agreement":null},{"id":"W4386648057","doi":"10.1186/s12879-023-08560-x","title":"Genomic classification and antimicrobial resistance profiling of Streptococcus pneumoniae and Haemophilus influenzae isolates associated with paediatric otitis media and upper respiratory infection","year":2023,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Joseph’s Healthcare Hamilton; University of British Columbia; McMaster University; St. Joseph's Hospital; University of Waterloo","funders":"","keywords":"Medical microbiology; Streptococcus pneumoniae; Haemophilus influenzae; Microbiology; Parasitology; Otitis; Antibiotic resistance; Biology; Acute otitis media; Medicine; Genetics; Pathology; Antibiotics","score_opus":0.019971963871693792,"score_gpt":0.256674608890559,"score_spread":0.2367026450188652,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386648057","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977223,0.00070399535,0.00002084545,0.00008092558,0.00013449967,0.0007452373,0.00013631725,0.0003339548,0.00012187588],"genre_scores_gemma":[0.99887276,0.0006218487,0.000010452651,0.00013100647,0.00014163516,0.00009721517,0.000055711113,0.00004324386,0.000026155614],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99858886,0.00013968885,0.00038379946,0.00044381164,0.00016292771,0.00028092883],"domain_scores_gemma":[0.9987562,0.000340413,0.0002664354,0.00021499858,0.00020659051,0.00021540941],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001890599,0.00025013607,0.000393401,0.00053578103,0.0003251863,0.00005736809,0.000030278801,0.00017088599,0.000005251397],"category_scores_gemma":[0.00059436786,0.00022156029,0.00006745514,0.00071729254,0.00034148435,0.00020236828,0.00005866882,0.00019637332,0.00000488204],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006128805,0.00012232245,0.9565498,0.0004340749,0.00009353728,0.000010490316,0.00013043206,0.00003462777,0.04206948,0.00008195627,0.000078973855,0.0003329655],"study_design_scores_gemma":[0.0019359734,0.00031634505,0.9957002,0.00023777834,0.00040439997,0.000022844259,0.00005193776,0.00017476243,0.00064802077,0.00012546791,0.0001489455,0.00023334635],"about_ca_topic_score_codex":0.000028836976,"about_ca_topic_score_gemma":0.00043399428,"teacher_disagreement_score":0.041421458,"about_ca_system_score_codex":0.000091252994,"about_ca_system_score_gemma":0.00023791967,"threshold_uncertainty_score":0.9034966},"labels":[],"label_agreement":null},{"id":"W4386895964","doi":"10.36347/sasjm.2023.v09i09.010","title":"Cognitive Impairment in Pneumonia","year":2023,"lang":"en","type":"article","venue":"SAS Journal of Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre","funders":"","keywords":"Pneumonia; Medicine; Dementia; Cognitive impairment; Community-acquired pneumonia; Cohort; Cohort study; Pediatrics; Internal medicine; Disease","score_opus":0.03205262677158979,"score_gpt":0.3491594555794097,"score_spread":0.31710682880781993,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386895964","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9711477,0.0002883169,0.000025154428,0.025202561,0.0006474753,0.0001575027,0.0000016663636,0.000026212387,0.002503387],"genre_scores_gemma":[0.99678016,0.00044605217,0.000007827076,0.0016029954,0.00069054397,0.0000035765606,0.0000026971975,0.000012565858,0.0004536024],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99875385,0.000058002934,0.0004987281,0.00008808665,0.00039553412,0.00020579332],"domain_scores_gemma":[0.9991896,0.00014823068,0.00017480201,0.00008366182,0.00020177205,0.00020189508],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00081109506,0.000100276935,0.00038024934,0.00070338184,0.000037395406,0.0000027430144,0.000053501677,0.00005920725,0.00019939277],"category_scores_gemma":[0.00043791952,0.00006394707,0.000085951324,0.00073056546,0.00013775345,0.00005643757,0.000016509637,0.00039183188,0.000081949904],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00097032177,0.0008627396,0.58563936,0.00030274247,0.00050255714,0.014601431,0.006009059,0.000068870046,0.33124447,0.00016405023,0.02497052,0.0346639],"study_design_scores_gemma":[0.008274051,0.0033737528,0.9642621,0.0019480461,0.0001762202,0.002714026,0.0024936865,0.000044934008,0.00053902227,0.0003445465,0.015744623,0.000084978376],"about_ca_topic_score_codex":0.00000933182,"about_ca_topic_score_gemma":0.000008545955,"teacher_disagreement_score":0.37862277,"about_ca_system_score_codex":0.00007697101,"about_ca_system_score_gemma":0.00016185123,"threshold_uncertainty_score":0.26076856},"labels":[],"label_agreement":null},{"id":"W4387004990","doi":"10.1016/j.vaccine.2023.09.042","title":"Clonal diversity of Streptococcus pneumoniae serotype 19A collected from children &lt; 5 years old in Québec, Canada, 2016–2021","year":2023,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Montréal; Centre hospitalier universitaire de Québec; Université Laval; Institut National de Santé Publique du Québec; Public Health Agency of Canada","funders":"Public Health Agency of Canada","keywords":"Serotype; Streptococcus pneumoniae; Biology; Clade; Phylogenetic tree; Genotype; Phylogenetic diversity; Microbiology; Antibiotics; Genetics; Gene","score_opus":0.008330492777208503,"score_gpt":0.21857768801915517,"score_spread":0.21024719524194665,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387004990","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968996,0.00008773212,6.721837e-7,0.0018615042,0.00020394109,0.00036452856,0.00025903553,0.000051398787,0.0002715734],"genre_scores_gemma":[0.99717724,0.000064151114,0.000003962231,0.00027407563,0.00012428506,0.0000122397605,0.00013421172,0.000016033437,0.0021938158],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989421,0.000043614655,0.00026896302,0.00024861618,0.00025129836,0.0002454143],"domain_scores_gemma":[0.9993298,0.00008350214,0.00008428905,0.0002815141,0.00008031987,0.0001405558],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007552015,0.00013358059,0.0003377079,0.00023134956,0.00010213001,0.0000045741067,0.00011556048,0.00009422287,0.00088825944],"category_scores_gemma":[0.00008348347,0.00012528668,0.000069171394,0.0009577788,0.000011507534,0.000037258145,0.00016623054,0.0002192161,0.00006982338],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046205267,0.0000897482,0.9518991,0.000009682628,0.00011325664,0.00011526373,0.00013807975,0.000054577144,0.016499968,0.0000030472488,0.030551547,0.00047949975],"study_design_scores_gemma":[0.0017944995,0.000116861636,0.9897119,0.000066465625,0.000063489046,0.0000048008633,0.000038144204,0.000069087386,0.0007389133,0.000007970717,0.0072729727,0.0001149055],"about_ca_topic_score_codex":0.7861907,"about_ca_topic_score_gemma":0.9297949,"teacher_disagreement_score":0.14360425,"about_ca_system_score_codex":0.0002128065,"about_ca_system_score_gemma":0.0010755209,"threshold_uncertainty_score":0.9725818},"labels":[],"label_agreement":null},{"id":"W4387157237","doi":"10.1080/21645515.2023.2257426","title":"Cost-effectiveness analysis of PCV20 to prevent pneumococcal disease in the Canadian pediatric population","year":2023,"lang":"en","type":"article","venue":"Human Vaccines & Immunotherapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer","keywords":"Pneumococcal conjugate vaccine; Medicine; Pneumococcal pneumonia; Cost effectiveness; Quality-adjusted life year; Pneumonia; Population; Otitis; Cost-effectiveness analysis; Pediatrics; Intensive care medicine; Environmental health; Internal medicine; Streptococcus pneumoniae; Surgery","score_opus":0.06997226984340042,"score_gpt":0.3738813292977974,"score_spread":0.30390905945439695,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387157237","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99768156,0.00012096273,0.00001794454,0.0007863597,0.00011002174,0.0011353404,0.000027261314,0.000045685298,0.00007487898],"genre_scores_gemma":[0.99889624,0.000041295694,0.0000025886836,0.0005568131,0.000088908724,0.00018233608,0.0001268544,0.000023127157,0.000081818536],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987096,0.0002027834,0.0003626298,0.00020910129,0.00022803168,0.00028784914],"domain_scores_gemma":[0.9990881,0.00012718674,0.0000802902,0.00045755613,0.00009867671,0.00014818223],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047908578,0.00015397568,0.00032948764,0.0015058247,0.00023429695,0.000026888285,0.00015085643,0.000075324926,0.000056984918],"category_scores_gemma":[0.000040802002,0.00011565981,0.00020732019,0.0034377018,0.000014049288,0.000043917633,0.000020189918,0.0001680685,0.000025387684],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046263776,0.0002087056,0.99050045,0.00006407722,0.00029053882,0.000018918501,0.0006108103,0.0031528738,0.004134861,0.00024747907,0.000016130813,0.00070888974],"study_design_scores_gemma":[0.0004454387,0.00011435028,0.9955982,0.0000249604,0.0012677108,0.0000016525781,0.000056910525,0.00041294462,0.000040632563,0.00009236849,0.0018264502,0.0001183563],"about_ca_topic_score_codex":0.01484506,"about_ca_topic_score_gemma":0.07624782,"teacher_disagreement_score":0.06140276,"about_ca_system_score_codex":0.00020935554,"about_ca_system_score_gemma":0.00015719976,"threshold_uncertainty_score":0.9917152},"labels":[],"label_agreement":null},{"id":"W4387169516","doi":"10.3390/vaccines11101548","title":"Changes in Invasive Pneumococcal Disease in the Paediatric Population in the Second COVID-19 Pandemic Year","year":2023,"lang":"en","type":"article","venue":"Vaccines","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Incidence (geometry); Quarter (Canadian coin); Medicine; Pandemic; Coronavirus disease 2019 (COVID-19); Population; Pediatrics; Demography; Disease; Internal medicine; Infectious disease (medical specialty); Environmental health","score_opus":0.0481649143570038,"score_gpt":0.32296273576238005,"score_spread":0.27479782140537623,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387169516","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9849953,0.00010015964,3.8514523e-7,0.014058082,0.00011495629,0.0005697318,0.000013241572,0.00004437948,0.00010378481],"genre_scores_gemma":[0.9958377,0.00019866582,4.277162e-7,0.0033627525,0.00025737085,0.00017898972,0.0000444433,0.000009131142,0.00011053111],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99911636,0.00021149771,0.00017996597,0.00016551591,0.00013554617,0.00019110841],"domain_scores_gemma":[0.99919987,0.00047206564,0.00004070955,0.00020683029,0.0000122475785,0.00006830105],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005240674,0.00009575747,0.00013852921,0.0004708405,0.000061532235,0.000015644657,0.00011208017,0.00006302463,0.000070720125],"category_scores_gemma":[0.00061280373,0.000053491167,0.00004115772,0.0013994536,0.000010881226,0.000051097064,0.000024651696,0.0002295063,0.000050349656],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030846964,0.0000596234,0.99664825,0.000084867694,0.0000027741596,0.00012319599,0.0014139685,0.00010265249,0.0008465091,0.000041573192,0.0004705239,0.00017519674],"study_design_scores_gemma":[0.0008625917,0.000048475693,0.99195987,0.00002230817,0.000015425525,0.00001575017,0.001126307,0.000075936885,0.000004484067,0.00048034597,0.0053243847,0.00006413416],"about_ca_topic_score_codex":0.00021273133,"about_ca_topic_score_gemma":0.024271606,"teacher_disagreement_score":0.024058873,"about_ca_system_score_codex":0.00007261534,"about_ca_system_score_gemma":0.00010638163,"threshold_uncertainty_score":0.9935329},"labels":[],"label_agreement":null},{"id":"W4387297932","doi":"10.1101/2023.10.03.23296132","title":"Predicting individualized treatment effects of corticosteroids in community-acquired-pneumonia: a data-driven analysis of randomized controlled trials","year":2023,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Logistic regression; Odds ratio; Placebo; Randomized controlled trial; Internal medicine; Missing data; Odds; Statistics","score_opus":0.10023121173922157,"score_gpt":0.3821971923184499,"score_spread":0.28196598057922834,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387297932","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98927546,0.00072487944,0.0002371714,0.00034610968,0.0007620999,0.007734401,0.0006565239,0.00013987898,0.00012347779],"genre_scores_gemma":[0.99526775,0.0013778313,0.00008611403,0.00005047626,0.00008845392,0.0017646038,0.0011868196,0.000059664326,0.000118296506],"study_design_codex":"observational","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9816544,0.011932279,0.0047597596,0.0005875891,0.00070537644,0.00036056884],"domain_scores_gemma":[0.9717289,0.021752292,0.0035582087,0.002521341,0.00026458234,0.00017467428],"candidate_categories":["metaresearch","metaepi_narrow","metaepi_broad"],"consensus_categories":[],"category_scores_codex":[0.013420023,0.0005873027,0.018330848,0.002761523,0.000103768834,0.00003134201,0.0005896226,0.00051436486,0.000032415177],"category_scores_gemma":[0.025885623,0.00038333016,0.0032254034,0.001342281,0.0003578758,0.000057027868,0.00087011076,0.00072027434,0.0000035668302],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.045149297,0.002680932,0.7810043,0.002397731,0.10417708,0.00015985407,0.004751713,0.0034655784,0.05558685,0.00001490047,0.0000090011945,0.0006027791],"study_design_scores_gemma":[0.5324805,0.0008418142,0.2967347,0.0027917014,0.13439451,0.0000064533833,0.00028479123,0.029795708,0.0021973418,0.00009829868,0.000024461622,0.00034976052],"about_ca_topic_score_codex":0.0016668239,"about_ca_topic_score_gemma":0.0008606067,"teacher_disagreement_score":0.48733115,"about_ca_system_score_codex":0.00017387088,"about_ca_system_score_gemma":0.0004485749,"threshold_uncertainty_score":0.99986184},"labels":[],"label_agreement":null},{"id":"W4387337806","doi":"10.1016/j.cjca.2023.06.210","title":"FLUOROQUINOLONES AND THE RISK OF SEVERE HYPOGLYCEMIA AMONG SULFONYLUREA USERS: POPULATION-BASED COHORT STUDY","year":2023,"lang":"en","type":"article","venue":"Canadian Journal of Cardiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Concomitant; Hypoglycemia; Sulfonylurea; Diabetes mellitus; Internal medicine; Population; Cohort; Cohort study; Amoxicillin; Adverse effect; Type 2 diabetes; Intensive care medicine; Insulin; Antibiotics; Endocrinology; Environmental health","score_opus":0.011355819417688533,"score_gpt":0.24052381406543896,"score_spread":0.22916799464775042,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387337806","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979773,0.00011254328,0.000024046205,0.00076112733,0.00037525565,0.00032024016,0.000019622676,0.000008065027,0.00040179995],"genre_scores_gemma":[0.9995263,0.00004398525,0.0000047227604,0.00009167429,0.00026950228,0.000007634261,0.000004897097,0.000010069647,0.00004121153],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99896395,0.0003135613,0.0003353275,0.00009353829,0.00011193243,0.00018166257],"domain_scores_gemma":[0.9988881,0.0002698198,0.00021379763,0.00018783621,0.00019176319,0.0002487326],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00073166715,0.000089586894,0.00050919846,0.000356098,0.00015216426,0.0000085470465,0.000077005236,0.000099009325,0.000008157331],"category_scores_gemma":[0.0005412935,0.00005693405,0.00016756862,0.00025409076,0.00028740603,0.000037271107,0.0000070095657,0.00028182575,0.0000029443775],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000066588815,0.0000020985797,0.99363893,0.000008634096,0.00045995164,0.00012506609,0.00015215344,0.004407564,0.00003618148,0.000018412482,0.0007996049,0.00028479917],"study_design_scores_gemma":[0.0021659879,0.00031771648,0.9938115,0.000024606466,0.00053180783,0.000301102,0.0004320197,0.000052519004,0.0000049176374,0.00007116883,0.0022334643,0.000053199215],"about_ca_topic_score_codex":0.005573095,"about_ca_topic_score_gemma":0.006139583,"teacher_disagreement_score":0.004355045,"about_ca_system_score_codex":0.00006280263,"about_ca_system_score_gemma":0.0005560306,"threshold_uncertainty_score":0.84248894},"labels":[],"label_agreement":null},{"id":"W4387366457","doi":"10.3389/fimmu.2023.1242659","title":"Multifaceted roles and regulation of nucleotide-binding oligomerization domain containing proteins","year":2023,"lang":"en","type":"review","venue":"Frontiers in Immunology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Dalhousie University","funders":"Canadian Institutes of Health Research; Dalhousie University; Kenneth Rainin Foundation; Dalhousie Medical Research Foundation","keywords":"NOD2; NOD1; Peptidoglycan; Nod; Innate immune system; Cell biology; Biology; Cytosol; Inflammasome; Inflammation; Signal transduction; Pattern recognition receptor; Immune system; Receptor; Chemistry; Biochemistry; Immunology; Enzyme","score_opus":0.027131861853909672,"score_gpt":0.3007011993417946,"score_spread":0.2735693374878849,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387366457","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.012182393,0.98343694,0.0013021141,0.000053210602,0.0009298701,0.0018058274,0.000025546296,0.00011368482,0.00015039228],"genre_scores_gemma":[0.000613298,0.9973923,0.0012970145,0.000009334384,0.00005014822,0.0001757565,0.00016850815,0.000062695304,0.00023092172],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984397,0.00023686419,0.000693367,0.00029660805,0.00009508281,0.00023837619],"domain_scores_gemma":[0.99916476,0.000067804096,0.00043910122,0.00024639379,0.000046372308,0.000035550158],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025746974,0.00023752099,0.0014620832,0.0010918402,0.0000791071,0.000008315073,0.00007537466,0.00050076353,0.000007938793],"category_scores_gemma":[0.00019246414,0.0002127562,0.00014355188,0.0006365252,0.00021350307,0.000058257774,0.00006119329,0.00040220996,0.000009835219],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008867374,0.00011365938,0.0045677763,0.011553258,0.0012517466,0.00004135268,0.0008681389,0.000009015929,0.010978567,0.0004481365,0.00009120167,0.96998847],"study_design_scores_gemma":[0.002459653,0.00071142626,0.0060138064,0.029643796,0.0009850967,0.00018078544,0.0012641763,0.0001322993,0.00012270249,0.00030501152,0.9576277,0.000553549],"about_ca_topic_score_codex":0.000017024307,"about_ca_topic_score_gemma":0.000008031794,"teacher_disagreement_score":0.9694349,"about_ca_system_score_codex":0.00015673938,"about_ca_system_score_gemma":0.00019526249,"threshold_uncertainty_score":0.8675946},"labels":[],"label_agreement":null},{"id":"W4387408922","doi":"10.12688/wellcomeopenres.19219.1","title":"Phylogenetic inference of pneumococcal transmission from cross-sectional data, a pilot study","year":2023,"lang":"en","type":"preprint","venue":"Wellcome Open Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Alberta","funders":"National Institute for Health and Care Research; National Institute for Health Research Health Protection Research Unit; Wellcome Trust; Ministry of Education, Culture, Sports, Science and Technology; Pfizer","keywords":"Inference; Phylogenetic tree; Cross-sectional study; Biology; Computer science; Computational biology; Artificial intelligence; Statistics; Genetics; Mathematics","score_opus":0.5427608346529678,"score_gpt":0.5292977221507162,"score_spread":0.013463112502251517,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387408922","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9899198,0.00013472441,0.00015099716,0.0005375102,0.00055807375,0.0046467627,0.00089837896,0.00007743946,0.003076339],"genre_scores_gemma":[0.9940787,0.00023688022,0.00012490514,0.000026199636,0.00036678946,0.0004985079,0.000863898,0.00008084357,0.0037232665],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99417675,0.0009237562,0.0009454811,0.0016096556,0.0017558961,0.0005884387],"domain_scores_gemma":[0.9948355,0.0009769264,0.00017509359,0.0028824217,0.00072038185,0.0004096706],"candidate_categories":["metaepi_narrow","open_science","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00373229,0.0003373801,0.00084298244,0.00067930995,0.00042303684,0.00041367137,0.0031261353,0.00030907997,0.0013177148],"category_scores_gemma":[0.0005491299,0.00028406226,0.00011226335,0.00074631366,0.00047214195,0.00012468218,0.008044005,0.0028874343,0.00058682193],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00065167557,0.0038102225,0.88851744,0.00035279422,0.0004190137,0.00015526116,0.00021784756,0.00029343707,0.10395836,0.000018049253,0.00037609835,0.0012297959],"study_design_scores_gemma":[0.001911471,0.00330994,0.98737395,0.00046579706,0.00007316648,0.0000075179623,0.00012502246,0.00090045034,0.00070716714,0.0010157351,0.0038614238,0.00024835506],"about_ca_topic_score_codex":0.010141226,"about_ca_topic_score_gemma":0.0005281764,"teacher_disagreement_score":0.10325119,"about_ca_system_score_codex":0.00016135698,"about_ca_system_score_gemma":0.0019074723,"threshold_uncertainty_score":0.9999787},"labels":[],"label_agreement":null},{"id":"W4387584852","doi":"10.4314/ahs.v23i2.21","title":"Challenges and recommendations for addressing under-five pneumonia morbidity and mortality in Nigeria","year":2023,"lang":"en","type":"article","venue":"African Health Sciences","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children’s Health Research Institute","funders":"","keywords":"Medicine; Pneumonia; Malnutrition; Focus group; Qualitative research; Severe Acute Malnutrition; Child mortality; Intensive care medicine; Anxiety; Environmental health; Family medicine; Pediatrics; Population; Psychiatry; Pathology; Internal medicine","score_opus":0.2702520716398572,"score_gpt":0.4485240248121227,"score_spread":0.17827195317226552,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387584852","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9234614,0.0006433402,0.000014012224,0.07445586,0.00016060153,0.0003585913,0.000016369555,0.000060223072,0.00082960556],"genre_scores_gemma":[0.99550545,0.00333698,0.00013702283,0.000866482,0.00004852006,0.000062003455,0.0000035510138,0.000004574489,0.0000354287],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99904555,0.000072033465,0.00019879839,0.0002886315,0.000115503695,0.00027948036],"domain_scores_gemma":[0.99939615,0.00024878702,0.0000744976,0.00009239865,0.00002671602,0.00016145295],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010362992,0.00007397613,0.0001972809,0.00021368207,0.00047714022,0.000024238827,0.000041146406,0.000034346165,0.00000318053],"category_scores_gemma":[0.00010630247,0.000060296446,0.000018272209,0.00043212587,0.00029428565,0.00010882153,0.00003264661,0.00008682562,0.0000018489872],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003266845,0.0003636474,0.7908093,0.0012855413,0.000059640137,0.000016475424,0.026669139,0.00007133339,0.0053500296,0.011787352,0.0021156822,0.16143921],"study_design_scores_gemma":[0.00025440115,0.0003365558,0.98365414,0.00011480287,0.00000579951,0.000013882144,0.009698817,0.0005379613,0.000015596454,0.0024138233,0.0028840501,0.00007014929],"about_ca_topic_score_codex":0.00026306423,"about_ca_topic_score_gemma":0.0028150976,"teacher_disagreement_score":0.19284488,"about_ca_system_score_codex":0.000040976225,"about_ca_system_score_gemma":0.00024459048,"threshold_uncertainty_score":0.3669825},"labels":[],"label_agreement":null},{"id":"W4387636926","doi":"10.1371/journal.pone.0292899","title":"Retrospective cohort analysis of outpatient antibiotic prescribing for community-acquired pneumonia in Canadian older adults","year":2023,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; University Health Network; Western University; University of Calgary; London Health Sciences Centre; Sinai Health System; Lawson Health Research Institute; BC Centre for Disease Control; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Antimicrobial stewardship; Guideline; Community-acquired pneumonia; Retrospective cohort study; Pneumonia; Population; Poisson regression; Cohort; Defined daily dose; Confidence interval; Cohort study; Internal medicine; Pediatrics; Medical prescription; Antibiotics; Emergency medicine; Antibiotic resistance; Environmental health; Pharmacology","score_opus":0.0417066524062795,"score_gpt":0.26896902392132904,"score_spread":0.22726237151504955,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387636926","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976928,0.000016092266,0.0000036661895,0.00040043343,0.000045566034,0.0010743914,0.00017366724,0.00006222632,0.0005311621],"genre_scores_gemma":[0.99934113,0.000021940936,0.00003084948,0.00015034384,0.0000224881,0.000059982547,0.00019901601,0.000020804875,0.00015346284],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988175,0.00009222347,0.00032118024,0.00018651795,0.00023490813,0.00034765786],"domain_scores_gemma":[0.99899596,0.00008994022,0.00008656675,0.00039151785,0.00024101697,0.00019498415],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003811585,0.0001148549,0.0005682809,0.0011902228,0.00016078123,0.000008237045,0.00008313844,0.0001048369,0.000024235756],"category_scores_gemma":[0.00043303854,0.00011274812,0.0001364085,0.0018949177,0.00005958969,0.000046107478,0.000028177481,0.00019802766,0.000010444595],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033382028,0.0010591095,0.9659299,0.0002163285,0.0016790603,0.0000092503205,0.0019447508,0.000042132357,0.028987056,0.000018478138,0.000025276491,0.000055224576],"study_design_scores_gemma":[0.0007444753,0.0003865715,0.98642516,0.0005322758,0.0017691309,5.037777e-7,0.00047835213,0.005971141,0.0035667592,0.000006467713,0.000015990523,0.000103199694],"about_ca_topic_score_codex":0.088130236,"about_ca_topic_score_gemma":0.25333932,"teacher_disagreement_score":0.16520907,"about_ca_system_score_codex":0.00038043023,"about_ca_system_score_gemma":0.00015249549,"threshold_uncertainty_score":0.917942},"labels":[],"label_agreement":null},{"id":"W4387765136","doi":"10.1080/22221751.2023.2272656","title":"A broad-spectrum pneumococcal vaccine induces mucosal immunity and protects against lethal <i>Streptococcus pneumoniae</i> challenge","year":2023,"lang":"en","type":"article","venue":"Emerging Microbes & Infections","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"National Research Council Canada; National Health Research Institutes","keywords":"Streptococcus pneumoniae; Serotype; Immunization; Vaccination; Microbiology; Immunogenicity; Immunity; Immune system; Pneumococcal infections; Immunology; Pneumococcal conjugate vaccine; Medicine; Virology; Biology; Antibiotics","score_opus":0.01579013149225269,"score_gpt":0.2760242690455793,"score_spread":0.26023413755332664,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387765136","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9841404,0.00032320953,0.00005340452,0.008302882,0.0007771005,0.0012456778,0.000034579785,0.0013844668,0.003738279],"genre_scores_gemma":[0.99701554,0.00091127394,0.000014582371,0.00030137593,0.0005234133,0.0004531714,0.00007031475,0.00009257983,0.0006177611],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9975456,0.00017881027,0.00056196493,0.00065177405,0.00024077529,0.0008210979],"domain_scores_gemma":[0.9986089,0.00014042573,0.00016726498,0.0005970085,0.00013379738,0.00035260065],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003788665,0.00047955464,0.0005586139,0.00083820085,0.0012751574,0.000094694326,0.00014578557,0.00030074368,0.0001066505],"category_scores_gemma":[0.00017438007,0.00045368396,0.00027777135,0.0015399775,0.00016756696,0.00027224692,0.00026077632,0.0012449028,0.0003232387],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016683956,0.0006541973,0.02932063,0.00020236273,0.00025492714,0.0001326607,0.00089786306,0.000100353944,0.96356285,0.00014054753,0.0009325017,0.0037844426],"study_design_scores_gemma":[0.006753623,0.0029690384,0.60434616,0.0010852008,0.00057774794,0.002175267,0.0016231026,0.00060454186,0.09138261,0.0007037082,0.2855856,0.002193362],"about_ca_topic_score_codex":0.0002030935,"about_ca_topic_score_gemma":0.00031583375,"teacher_disagreement_score":0.8721802,"about_ca_system_score_codex":0.00014700963,"about_ca_system_score_gemma":0.00020143812,"threshold_uncertainty_score":0.9997915},"labels":[],"label_agreement":null},{"id":"W4388002244","doi":"10.1186/s12887-023-04355-w","title":"Quality of antibiotic prescribing for pediatric community-acquired Pneumonia in outpatient care","year":2023,"lang":"en","type":"article","venue":"BMC Pediatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; University Health Network; Western University; University of Calgary; University of British Columbia; BC Centre for Disease Control; London Health Sciences Centre; Sinai Health System; Lawson Health Research Institute","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Medical prescription; Guideline; Community-acquired pneumonia; Amoxicillin; Pneumonia; Antibiotics; Retrospective cohort study; Cohort; Pediatrics; Emergency medicine; Intensive care medicine; Internal medicine; Pharmacology","score_opus":0.09886687871383343,"score_gpt":0.35582056566866993,"score_spread":0.2569536869548365,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388002244","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975412,0.00029082186,0.00017239623,0.00006351101,0.00047225214,0.0008720702,0.00012332245,0.0001474283,0.00031700145],"genre_scores_gemma":[0.9989551,0.00019077628,0.0002122464,0.000062362094,0.00031991722,0.00003657321,0.00010934425,0.000031186195,0.00008255198],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99825335,0.00026372742,0.000640732,0.00020311237,0.00029261125,0.00034646582],"domain_scores_gemma":[0.9982204,0.0007392191,0.00021752372,0.00045500827,0.00025009614,0.0001177523],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00076326984,0.00016238188,0.00042332854,0.0006543776,0.00017942954,0.000011167579,0.00013931586,0.00017706593,0.000003302532],"category_scores_gemma":[0.001270136,0.00015392689,0.00020225231,0.0014648073,0.00004332687,0.00006637953,0.00010025197,0.00025928929,0.000019124825],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005138625,0.00027572797,0.99052626,0.0029099951,0.000006578781,0.0000034422799,0.0018003396,0.0002480498,0.0036392568,0.00004009069,0.00021337869,0.00028550797],"study_design_scores_gemma":[0.0017900856,0.00049424137,0.9939659,0.000027175734,0.00013015137,0.0000025292834,0.0025727893,0.0001809257,0.00025490668,0.000036766905,0.00038294354,0.0001615366],"about_ca_topic_score_codex":0.00015639841,"about_ca_topic_score_gemma":0.00022279816,"teacher_disagreement_score":0.0034397019,"about_ca_system_score_codex":0.00011359711,"about_ca_system_score_gemma":0.0002982741,"threshold_uncertainty_score":0.6276956},"labels":[],"label_agreement":null},{"id":"W4388266016","doi":"10.1016/j.jcjd.2023.10.201","title":"FLUOROQUINOLONES AND THE RISK OF SEVERE HYPOGLYCEMIA AMONG SULFONYLUREA USERS: POPULATION-BASED COHORT STUDY","year":2023,"lang":"en","type":"article","venue":"Canadian Journal of Diabetes","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Sulfonylurea; Cohort; Hypoglycemia; Population; Cohort study; Environmental health; Demography; Internal medicine; Insulin","score_opus":0.009264097841595665,"score_gpt":0.22735387092291304,"score_spread":0.21808977308131738,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388266016","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99842864,0.00017677499,5.5491233e-7,0.0007471058,0.00020387358,0.00033347617,0.000023899562,0.000010117418,0.000075562355],"genre_scores_gemma":[0.999693,0.000008985079,0.0000060888747,0.00012883147,0.00009153563,0.000007941151,0.000004606078,0.000012735431,0.000046286554],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999081,0.00013317616,0.00033486105,0.00008590137,0.00016585515,0.00019916978],"domain_scores_gemma":[0.9988027,0.00029350584,0.00024806848,0.00016912028,0.00017808098,0.00030851678],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005792038,0.000097054406,0.00034288876,0.00037686975,0.0001885565,0.00002388974,0.000081126054,0.00006034639,0.000029262528],"category_scores_gemma":[0.000588614,0.000061750485,0.000114358096,0.00035532637,0.0001952975,0.00007336633,0.000006171238,0.00023299368,0.0000032416835],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008261886,0.000015844322,0.9983931,0.000020278674,0.00026778583,0.000016158903,0.0002558214,0.0002922934,0.000076751494,0.000008212655,0.0003170999,0.0003283553],"study_design_scores_gemma":[0.0019115772,0.00027836068,0.99627316,0.0000914923,0.0004437335,0.0000050777476,0.00045097113,0.00017804085,0.000042120384,0.00007536016,0.00018662232,0.00006349903],"about_ca_topic_score_codex":0.0029725865,"about_ca_topic_score_gemma":0.012077864,"teacher_disagreement_score":0.009105278,"about_ca_system_score_codex":0.000055065502,"about_ca_system_score_gemma":0.00043676273,"threshold_uncertainty_score":0.6739732},"labels":[],"label_agreement":null},{"id":"W4388522715","doi":"10.21203/rs.3.rs-3558072/v1","title":"Predictors of mortality in severe pneumonia patients: A systematic review and meta-analysis","year":2023,"lang":"en","type":"review","venue":"Research Square","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Henan University; National Natural Science Foundation of China","keywords":"Medicine; Internal medicine; Cochrane Library; Confidence interval; Odds ratio; Meta-analysis; ARDS; Pneumonia; Septic shock; Comorbidity; Sepsis; Lung","score_opus":0.24302215643886074,"score_gpt":0.485579134583193,"score_spread":0.24255697814433227,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388522715","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000935004,0.9912351,3.507279e-7,0.00008119328,0.000021891776,0.0077256653,0.00061796943,0.00004482496,0.00017954629],"genre_scores_gemma":[0.00025330755,0.99646103,0.0000012821329,0.0000395065,0.000017991752,0.00218322,0.00020566673,0.000053554188,0.00078445434],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99331737,0.0024370903,0.0018022327,0.00060568436,0.0013741392,0.0004634611],"domain_scores_gemma":[0.9964724,0.00091747986,0.0004828043,0.0011856453,0.00066528347,0.00027639745],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0035906013,0.00039999947,0.009890064,0.0019642909,0.00008770261,0.000024385685,0.00023753116,0.00032128146,0.00013839336],"category_scores_gemma":[0.0024739474,0.00023791494,0.0026577916,0.006069828,0.00017133627,0.00006655769,0.00021453913,0.0010197662,0.000069616675],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[6.945787e-7,0.00015860374,0.0024032071,0.8938448,0.103338026,0.000036381698,0.000025444695,2.7351211e-7,5.874409e-8,0.0000092945165,0.000086472624,0.00009674881],"study_design_scores_gemma":[0.00012923687,0.00020322928,0.002232359,0.17941448,0.805938,0.000013814898,0.000027676917,0.0000014292347,3.31801e-8,0.000005463182,0.011848029,0.00018623962],"about_ca_topic_score_codex":0.00012424456,"about_ca_topic_score_gemma":0.00015350427,"teacher_disagreement_score":0.71443033,"about_ca_system_score_codex":0.00023561045,"about_ca_system_score_gemma":0.00045210496,"threshold_uncertainty_score":0.970189},"labels":[],"label_agreement":null},{"id":"W4388905413","doi":"10.1080/14760584.2023.2286374","title":"Effectiveness of pneumococcal vaccination on hospitalization and death in the adult and older adult diabetic population: a systematic review","year":2023,"lang":"en","type":"review","venue":"Expert Review of Vaccines","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Vaccination; Population; Pneumococcal disease; Intensive care medicine; Streptococcus pneumoniae; Pediatrics; Immunology; Biology; Environmental health","score_opus":0.021340898630369604,"score_gpt":0.36570404755716224,"score_spread":0.34436314892679265,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388905413","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0005533536,0.99002826,0.0000056192343,0.00028686394,0.00011632634,0.008935291,0.0000108089425,0.000027455288,0.000036030287],"genre_scores_gemma":[0.000866672,0.9965251,0.0000057148836,0.00047151334,0.00006190847,0.001889201,0.00012366248,0.000046385925,0.00000980526],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.9962319,0.001296271,0.0015828342,0.00039072832,0.00033987436,0.00015839453],"domain_scores_gemma":[0.997207,0.00092311046,0.00088801526,0.0005496719,0.00037346245,0.00005874697],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012292967,0.0004249675,0.003797614,0.00029422902,0.00005503982,0.000011776183,0.00013979177,0.00017516223,0.000009556872],"category_scores_gemma":[0.0024070917,0.00022798241,0.00037686474,0.00091969915,0.0000140049015,0.0000792885,0.000042370866,0.00021446345,0.0000050194526],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000024383833,0.000103544044,0.000528238,0.9879901,0.00010980919,0.0000052062264,0.00004688012,4.3101682e-8,0.0000024247702,0.0003496302,0.000043989887,0.010817733],"study_design_scores_gemma":[0.0003216248,0.00025285422,0.015008819,0.98035574,0.0023945044,0.000117277275,0.000013939403,0.000004085266,0.0000017300979,0.000014677724,0.0013231544,0.0001915945],"about_ca_topic_score_codex":0.000028707913,"about_ca_topic_score_gemma":0.000005122382,"teacher_disagreement_score":0.0144805815,"about_ca_system_score_codex":0.00006760847,"about_ca_system_score_gemma":0.00006163429,"threshold_uncertainty_score":0.92968524},"labels":[],"label_agreement":null},{"id":"W4389029628","doi":"10.1093/ofid/ofad500.1495","title":"1662. Perspectives of Caregivers of Children with Community-Acquired Pneumonia in the Emergency Department: A Qualitative Study","year":2023,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University; University of Toronto","funders":"","keywords":"Feeling; Medicine; Emergency department; Pneumonia; Qualitative research; Antibiotics; Grounded theory; Family medicine; Intensive care medicine; Pediatrics; Psychiatry; Psychology; Internal medicine","score_opus":0.02585194570015075,"score_gpt":0.35486533201096,"score_spread":0.32901338631080923,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389029628","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99333847,0.00009007522,0.000002559174,0.00031500444,0.000047915106,0.0021449039,0.00018872775,0.000056506964,0.003815852],"genre_scores_gemma":[0.99938476,0.000057243004,0.0000010213813,0.00004986131,0.000011365428,0.00032520475,0.000070985494,0.000021622156,0.00007795788],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99806327,0.0008737608,0.00033063383,0.00020156578,0.00029199393,0.00023877375],"domain_scores_gemma":[0.9988536,0.00017788688,0.00020196245,0.0005126669,0.00017375498,0.0000800764],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038064303,0.00018189327,0.0004215713,0.0002758562,0.00034907588,0.000020136173,0.00030793663,0.000036759495,0.000053188018],"category_scores_gemma":[0.00012261154,0.00011943366,0.000125702,0.0012517269,0.0002289798,0.00018044985,0.00016988779,0.00016478894,0.000010023146],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013081371,0.0035027429,0.873788,0.00004529705,0.00048793564,0.000014632021,0.12109863,0.00004501147,0.00022464832,0.00027080748,0.0002757798,0.00011569007],"study_design_scores_gemma":[0.0016532898,0.002333829,0.6275798,0.00005453585,0.000221896,0.000012038553,0.36780316,0.00000232063,0.000031544947,0.00018422112,0.00003260423,0.00009071228],"about_ca_topic_score_codex":0.0026366662,"about_ca_topic_score_gemma":0.0032782485,"teacher_disagreement_score":0.24670455,"about_ca_system_score_codex":0.00005560927,"about_ca_system_score_gemma":0.0001493815,"threshold_uncertainty_score":0.48703632},"labels":[],"label_agreement":null},{"id":"W4389030131","doi":"10.1093/ofid/ofad500.2211","title":"2596. Title: The Dynamics Of Invasive Pneumococcal Disease (IPD) due to <i>Streptococcus pneumoniae</i> and Impact Of Pneumococcal Conjugate Vaccines (PCVs) In Canada From 2000-2019","year":2023,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Institut National de Santé Publique du Québec; University of Alberta; University of British Columbia","funders":"","keywords":"Pneumococcal disease; Medicine; Serotype; Pneumococcal conjugate vaccine; Streptococcus pneumoniae; Incidence (geometry); Population; Pediatrics; Pneumococcal infections; Epidemiology; Demography; Virology; Internal medicine; Environmental health; Biology; Microbiology; Antibiotics","score_opus":0.007571004839395869,"score_gpt":0.26784728618239656,"score_spread":0.2602762813430007,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389030131","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9934091,0.00016096841,0.0000023212156,0.0012202943,0.00027174823,0.0011907576,0.0015376962,0.00004165942,0.0021654358],"genre_scores_gemma":[0.998832,0.00018242677,5.605334e-7,0.00019941901,0.00004289356,0.00014595404,0.00014838496,0.00003548325,0.00041287325],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985627,0.00008279593,0.00043490887,0.00031855682,0.0002183095,0.0003827212],"domain_scores_gemma":[0.99841255,0.00039207545,0.00016169113,0.00044967825,0.0001294433,0.00045457997],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008830548,0.00023820097,0.00049383426,0.00016523735,0.00015832367,0.0000515826,0.00023038992,0.000058971174,0.00016482623],"category_scores_gemma":[0.00032389167,0.00017103006,0.00015084604,0.00062146015,0.00009601019,0.000116080744,0.00029178374,0.00016491619,0.000057135225],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010466638,0.00014247546,0.9878508,0.0000529438,0.00014405722,0.000120075536,0.000036019,0.00027457194,0.004439417,0.00013310944,0.0045013605,0.0022005406],"study_design_scores_gemma":[0.0009308176,0.00032026623,0.99579924,0.00016373768,0.00013234887,0.000012875172,0.00019434936,0.000515909,0.00018308287,0.000555167,0.0009950164,0.00019715901],"about_ca_topic_score_codex":0.20132051,"about_ca_topic_score_gemma":0.5003746,"teacher_disagreement_score":0.2990541,"about_ca_system_score_codex":0.00043420485,"about_ca_system_score_gemma":0.0029140455,"threshold_uncertainty_score":0.80399793},"labels":[],"label_agreement":null},{"id":"W4389030582","doi":"10.1093/ofid/ofad500.2220","title":"2606. Epidemiology of invasive pneumococcal disease in adults with and without underlying lung disease in Ontario, Canada","year":2023,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Mount Sinai Hospital; HalTech; William Osler Health System; Public Health Agency of Canada; Sinai Health System; The Scarborough Hospital; Public Health Ontario; University of Toronto","funders":"","keywords":"Medicine; Bronchiectasis; Epidemiology; Pneumococcal disease; Asthma; COPD; Streptococcus pneumoniae; Population; Pediatrics; Disease; Pneumococcal infections; Internal medicine; Intensive care medicine; Lung; Environmental health","score_opus":0.02752278093185365,"score_gpt":0.3041519001046282,"score_spread":0.27662911917277455,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389030582","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958643,0.00021406518,0.000006131321,0.0013891943,0.00012220924,0.0014912088,0.00009866331,0.000055448087,0.0007588053],"genre_scores_gemma":[0.99823165,0.00007750848,0.0000026929658,0.0009038998,0.000014712317,0.00040051455,0.00012685341,0.000034695753,0.000207481],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9980733,0.00018377342,0.0004879375,0.0005176062,0.00018615408,0.0005512691],"domain_scores_gemma":[0.9982345,0.00037872005,0.00016482416,0.00035969468,0.00007562899,0.000786598],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016628923,0.00027128297,0.0006563368,0.00035391017,0.00015879801,0.00001843955,0.00013761799,0.000064361906,0.00008063583],"category_scores_gemma":[0.00072621205,0.00022420274,0.000073443916,0.0005824638,0.00018961575,0.00024247295,0.0002116155,0.00029043682,0.000004171185],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00081111427,0.0003261371,0.9957624,0.00035315278,0.000069993745,0.00044998777,0.00012789387,0.0014257692,0.000034334567,0.00026735,0.00021689806,0.00015498577],"study_design_scores_gemma":[0.003402145,0.00022981381,0.9928663,0.0011721285,0.0001564285,0.000014079509,0.0002568027,0.0007711688,0.000003014347,0.00067901256,0.00019485189,0.00025428674],"about_ca_topic_score_codex":0.82779795,"about_ca_topic_score_gemma":0.9906935,"teacher_disagreement_score":0.16289553,"about_ca_system_score_codex":0.0005763596,"about_ca_system_score_gemma":0.004287284,"threshold_uncertainty_score":0.9142722},"labels":[],"label_agreement":null},{"id":"W4389030812","doi":"10.1093/ofid/ofad500.1750","title":"2127. <i>In vitro</i> Activities of Ceftaroline and Comparator Agents against Bacterial Pathogens Frequently Causing Community-Acquired Respiratory Tract Infections in Patients from a Global Population: ATLAS Surveillance Program 2018-2021","year":2023,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Moraxella catarrhalis; Medicine; Streptococcus pneumoniae; Haemophilus influenzae; Microbiology; Staphylococcus aureus; Broth microdilution; Respiratory tract infections; Population; Bacterial pneumonia; Internal medicine; Pneumonia; Antibiotics; Biology; Respiratory system; Bacteria; Minimum inhibitory concentration","score_opus":0.025714360368881528,"score_gpt":0.31269731869959483,"score_spread":0.2869829583307133,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389030812","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947934,0.0000640779,0.0000020165949,0.00009929474,0.00057007663,0.0016884039,0.0019929493,0.00015081977,0.00063896464],"genre_scores_gemma":[0.9974448,0.000047467307,0.000009643212,0.00030749745,0.0000966332,0.00026761394,0.0017795569,0.000038090726,0.0000087115895],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99751884,0.0006315692,0.00070057,0.00039079628,0.00028004672,0.00047819564],"domain_scores_gemma":[0.99867284,0.00019864502,0.00029909908,0.0004704106,0.000108292166,0.00025071518],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00024087624,0.00033402594,0.00076771236,0.0003387917,0.00044604056,0.00014687213,0.0001366115,0.0001701621,0.000046395995],"category_scores_gemma":[0.00020846246,0.0003392198,0.00015170775,0.0011313112,0.00017947663,0.00052552536,0.00027576814,0.00026494055,0.000011896796],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003486334,0.00437754,0.98437655,0.00006222378,0.00009531919,0.00003926755,0.00012073119,0.00015216669,0.007284294,0.000007936782,0.0002987479,0.002836605],"study_design_scores_gemma":[0.0058458988,0.00079160376,0.99094296,0.00019879214,0.000071366674,0.000007485605,0.00022821935,0.00014617475,0.00022201292,0.00011085617,0.0011360123,0.00029859273],"about_ca_topic_score_codex":0.0043949615,"about_ca_topic_score_gemma":0.0072179525,"teacher_disagreement_score":0.007062281,"about_ca_system_score_codex":0.00041187505,"about_ca_system_score_gemma":0.0002232913,"threshold_uncertainty_score":0.999906},"labels":[],"label_agreement":null},{"id":"W4389032076","doi":"10.1093/ofid/ofad500.1484","title":"1650. Caregiver Perspectives on Educational Materials Used for Paediatric Community-Acquired Pneumonia and Antibiotic Stewardship in the Emergency Department: A Qualitative Study","year":2023,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University; University of Toronto","funders":"","keywords":"Medicine; Emergency department; Qualitative research; Family medicine; Nursing","score_opus":0.041568493096113206,"score_gpt":0.3855432346014242,"score_spread":0.343974741505311,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389032076","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9917661,0.00012470875,0.0000013733599,0.0028884518,0.0002886945,0.0037680888,0.00041533555,0.00007398678,0.00067326607],"genre_scores_gemma":[0.9981116,0.00008278993,0.0000011574365,0.0002827801,0.000098803255,0.001014225,0.00019540379,0.000032200653,0.0001810407],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9976559,0.0011441142,0.00032055678,0.0003195973,0.0002336492,0.0003261532],"domain_scores_gemma":[0.9984217,0.00081651204,0.00013071396,0.00038804865,0.00012487947,0.00011811734],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00070339296,0.00022844296,0.00036695745,0.00032967687,0.0008923829,0.00013996684,0.00021458254,0.000056471392,0.00007335029],"category_scores_gemma":[0.0004645605,0.00016585962,0.00010219411,0.0007211714,0.000105643536,0.00019950322,0.00013901251,0.0001312856,0.00004149486],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027010625,0.007431942,0.80531305,0.0002212075,0.0003911043,0.00002267929,0.17858213,0.000017035281,0.0015500137,0.0028987569,0.0031030974,0.00019885103],"study_design_scores_gemma":[0.0023841811,0.0022371956,0.71278936,0.000046992896,0.000246212,0.000011186166,0.27979922,0.0000039118922,0.000043920973,0.0020158943,0.00023115838,0.00019078043],"about_ca_topic_score_codex":0.00041650113,"about_ca_topic_score_gemma":0.0006975924,"teacher_disagreement_score":0.101217076,"about_ca_system_score_codex":0.00010850832,"about_ca_system_score_gemma":0.00017563942,"threshold_uncertainty_score":0.6863578},"labels":[],"label_agreement":null},{"id":"W4389083107","doi":"10.1099/mgen.0.001141","title":"Genomic analysis of Streptococcus pneumoniae serogroup 20 isolates in Alberta, Canada from 1993–2019","year":2023,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; Women and Children’s Health Research Institute; University of Alberta","funders":"Ministry of Economic Development and Trade, Government of Alberta; Pfizer Canada; Merck Canada; Government of Alberta; Pfizer","keywords":"Biology; Multilocus sequence typing; Antibiotic resistance; Microbiology; Streptococcus pneumoniae; Typing; Serotype; Carriage; Tigecycline; Tetracycline; Molecular epidemiology; Virology; Genotype; Antibiotics; Medicine; Genetics; Gene","score_opus":0.008675246165884103,"score_gpt":0.22831491935321752,"score_spread":0.2196396731873334,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389083107","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976014,0.00006264095,0.0000063039292,0.0007254381,0.00033771514,0.00033926693,0.0007029249,0.00003499482,0.00018932762],"genre_scores_gemma":[0.9976154,0.000081560764,0.000023210823,0.00045421062,0.000110266126,0.000012888681,0.0006832083,0.00003585696,0.0009833782],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985415,0.000045152487,0.0005578706,0.00037497093,0.00009621906,0.00038430793],"domain_scores_gemma":[0.99908715,0.0001354759,0.00015412917,0.00043237125,0.000051983854,0.00013886718],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000103904684,0.00021339407,0.0006406335,0.00056919234,0.00007119114,0.000015864802,0.00016588082,0.00014289585,0.00013827249],"category_scores_gemma":[0.000025038922,0.00021532933,0.00023563641,0.0014126146,0.000057579255,0.000035237215,0.000093351875,0.00023218276,0.00008622988],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019707295,0.00005282654,0.32417428,0.000013157468,0.000647394,0.000027303427,0.00030361337,0.0036805288,0.6696915,0.0000040373257,0.0011372204,0.00024841222],"study_design_scores_gemma":[0.0011060081,0.000089682,0.9260995,0.000034017994,0.0012047004,0.0000057768007,0.00022157448,0.0029348882,0.011412546,0.000013874086,0.056548674,0.0003287742],"about_ca_topic_score_codex":0.70172316,"about_ca_topic_score_gemma":0.94485605,"teacher_disagreement_score":0.65827894,"about_ca_system_score_codex":0.000449589,"about_ca_system_score_gemma":0.00074946345,"threshold_uncertainty_score":0.8780875},"labels":[],"label_agreement":null},{"id":"W4389295958","doi":"10.1097/inf.0000000000004199","title":"Bloodstream Infections in Children Hospitalized for Influenza, the Canadian Immunization Monitoring Program Active","year":2023,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary; Janeway Children's Health and Rehabilitation Centre; University of Alberta; McGill University Health Centre; McGill University; Public Health Agency of Canada; Dalhousie University; BC Children's Hospital; Montreal Children's Hospital; University of Toronto; SickKids Foundation; Alberta Children's Hospital; Stollery Children's Hospital; Hospital for Sick Children; University of British Columbia","funders":"Moderna; GlaxoSmithKline; Public Health Agency; Children's Hospital Foundation; Public Health Agency of Canada; Sanofi; Michael Smith Health Research BC; BC Children's Hospital; Sanofi Pasteur; Seqirus; AstraZeneca; Pfizer","keywords":"Medicine; Odds ratio; Pneumonia; Confidence interval; Intensive care unit; Logistic regression; Streptococcus pneumoniae; Internal medicine; Bacteremia; Bloodstream infection; Pediatrics; Immunology; Antibiotics; Biology; Microbiology","score_opus":0.01321570913938268,"score_gpt":0.3049768468419851,"score_spread":0.2917611377026024,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389295958","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99490577,0.00015430701,0.000015346666,0.0014236777,0.0009854955,0.0019722993,0.00003972898,0.00023558043,0.0002677948],"genre_scores_gemma":[0.99619806,0.00057945604,0.000005482322,0.00023687264,0.002211903,0.00062107894,0.000019527037,0.000042111973,0.000085486965],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99848694,0.00015775427,0.00036723356,0.00017836485,0.00026542402,0.000544271],"domain_scores_gemma":[0.99858165,0.00019453214,0.00018614896,0.00030606205,0.0002889254,0.0004427077],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00047682098,0.0002050261,0.00019975506,0.0007770411,0.002135664,0.0001824637,0.00015754413,0.000110109744,0.000021538064],"category_scores_gemma":[0.00072344975,0.00012761839,0.00025706505,0.0019337023,0.000087648936,0.00017975939,0.000037547892,0.0007285281,0.0000452471],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002562517,0.00026920534,0.9946414,0.0000153779,0.000144879,0.000012142026,0.0002793192,0.0015118548,0.000014470601,0.000027170963,0.00038503556,0.0026734914],"study_design_scores_gemma":[0.0017835927,0.0002941698,0.9943481,0.000023404444,0.00068365113,0.00040527235,0.000107699445,0.00021580914,0.000006657554,0.00051627506,0.0014643874,0.00015098749],"about_ca_topic_score_codex":0.005497061,"about_ca_topic_score_gemma":0.003706311,"teacher_disagreement_score":0.002522504,"about_ca_system_score_codex":0.00046470398,"about_ca_system_score_gemma":0.0013577207,"threshold_uncertainty_score":0.99916345},"labels":[],"label_agreement":null},{"id":"W4389329963","doi":"10.2139/ssrn.4654901","title":"Use of 15-Valent and 20-Valent Pneumococcal Conjugate Vaccines in the Pediatric Canadian Population: A Cost-Utility Analysis","year":2023,"lang":"en","type":"article","venue":"SSRN Electronic Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Pneumococcal conjugate vaccine; Conjugate; Medicine; Population; Conjugate vaccine; Streptococcus pneumoniae; Immunology; Environmental health; Immunization; Microbiology; Biology; Antigen; Mathematics; Antibiotics","score_opus":0.02781110538565274,"score_gpt":0.2876275402360325,"score_spread":0.25981643485037975,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389329963","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958886,0.000508764,0.000018849636,0.0030729752,0.000091826005,0.00032666637,0.000018036975,0.000017021226,0.00005727661],"genre_scores_gemma":[0.9961183,0.0033227745,0.0000017980491,0.00018079512,0.00016943282,0.000014605321,0.000020530897,0.000010324719,0.00016142118],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99787456,0.00019570415,0.00042940225,0.00018392234,0.00025492065,0.0010614707],"domain_scores_gemma":[0.99924666,0.00011306187,0.00013586802,0.00021344246,0.000102948754,0.0001880144],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014039843,0.00013622448,0.00031650366,0.0009325041,0.0002143463,0.000032434753,0.00009479943,0.000085605774,0.000027575663],"category_scores_gemma":[0.00013420286,0.000093398405,0.00018680953,0.0017775267,0.00003126265,0.00010887314,0.000017368435,0.0010258629,0.000007921715],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026578133,0.000052305055,0.9975342,0.000016775153,0.00025293956,0.000026514137,0.00016034006,0.0002802597,0.00013906416,0.00029239542,0.00008162378,0.0011369794],"study_design_scores_gemma":[0.0005407755,0.00019560305,0.9947754,0.000009216582,0.0008130699,0.0003796584,0.00048207885,0.00078891206,0.000004973331,0.00094242237,0.0009803271,0.00008754243],"about_ca_topic_score_codex":0.01394129,"about_ca_topic_score_gemma":0.33690813,"teacher_disagreement_score":0.32296684,"about_ca_system_score_codex":0.00041245393,"about_ca_system_score_gemma":0.0013420705,"threshold_uncertainty_score":0.99262494},"labels":[],"label_agreement":null},{"id":"W4389560705","doi":"10.1186/s12890-023-02794-w","title":"Adjunct prednisone in community-acquired pneumonia: 180-day outcome of a multicentre, double-blind, randomized, placebo-controlled trial","year":2023,"lang":"en","type":"article","venue":"BMC Pulmonary Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Impact","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Universität Basel","keywords":"Medicine; Pneumonia; Placebo; Community-acquired pneumonia; Prednisone; Clinical endpoint; Internal medicine; Corticosteroid; Randomized controlled trial; Clinical trial","score_opus":0.08182101631013049,"score_gpt":0.35740500114450446,"score_spread":0.27558398483437396,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389560705","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97467226,0.0005183694,0.0001318744,0.0027902573,0.0018875861,0.012493769,0.000016608199,0.00030814996,0.0071811276],"genre_scores_gemma":[0.99210685,0.00024140044,0.000030916308,0.00038114135,0.0007100972,0.0019001561,0.00016902339,0.000074705196,0.0043856753],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9934492,0.0021206015,0.0023943828,0.00045611925,0.00088098925,0.0006987244],"domain_scores_gemma":[0.99343413,0.0043234555,0.0006132541,0.0010182405,0.0002233346,0.0003876011],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.006557562,0.00053343887,0.0035518948,0.0013653876,0.00025183713,0.000010280544,0.00034306772,0.0003586607,0.00026890743],"category_scores_gemma":[0.0035589754,0.00036331327,0.0006500556,0.0016694134,0.0007546451,0.0001476212,0.00016561593,0.000839959,0.00012701156],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.9621148,0.0016154967,0.017532853,0.00049218157,0.00032386658,0.00032824842,0.0012524279,0.00016202031,0.01558172,0.00007641862,0.00018411301,0.0003358188],"study_design_scores_gemma":[0.9777162,0.0012045522,0.011722217,0.0006406846,0.0009460667,0.000118759664,0.0014072624,0.004970745,0.000118610275,0.00008103997,0.0007841099,0.00028975573],"about_ca_topic_score_codex":0.0007196163,"about_ca_topic_score_gemma":0.00035978833,"teacher_disagreement_score":0.017434627,"about_ca_system_score_codex":0.00014868521,"about_ca_system_score_gemma":0.00027337956,"threshold_uncertainty_score":0.99988186},"labels":[],"label_agreement":null},{"id":"W4390331335","doi":"10.1371/journal.pcbi.1011755","title":"Pneumococcal population dynamics: Investigating vaccine-induced changes through multiscale modelling","year":2023,"lang":"en","type":"article","venue":"PLoS Computational Biology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Biology; Colonisation; Competition (biology); Vaccination; Resistance (ecology); Population; Strain (injury); Evolutionary biology; Host (biology); Ecology; Microbiology; Virology; Colonization; Demography","score_opus":0.08285578068176484,"score_gpt":0.33248426278000204,"score_spread":0.24962848209823718,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390331335","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98483086,0.000012777155,0.008934606,0.0050415383,0.00024848618,0.0002836633,0.000027364855,0.00037417014,0.0002465394],"genre_scores_gemma":[0.9952998,0.00000813008,0.0023922902,0.0007335383,0.00027734207,0.00005256013,0.0011659665,0.000022849254,0.000047521866],"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99900335,0.000075284544,0.00025881667,0.00029241992,0.00012374774,0.0002464069],"domain_scores_gemma":[0.99933887,0.00024015707,0.000094259536,0.00010791478,0.00013417106,0.00008463996],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000089392815,0.00014019523,0.0002447674,0.00018808157,0.00021550567,0.000011135043,0.000054154858,0.00015395683,0.00001954308],"category_scores_gemma":[0.000107038984,0.00012524339,0.000061084465,0.000403732,0.00003254533,0.00006305302,0.000045885743,0.00020444502,0.000137224],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031989755,0.00025383875,0.41495773,0.00017028172,0.00027511947,0.000030464798,0.0007247179,0.34091178,0.22436792,0.013869129,0.00009644747,0.004310582],"study_design_scores_gemma":[0.0005482325,0.00019037572,0.09569042,0.000054303397,0.000038200218,0.000037000424,0.0000618053,0.8893397,0.0003727262,0.013391588,0.00013772587,0.00013794658],"about_ca_topic_score_codex":0.00007516352,"about_ca_topic_score_gemma":0.000055276185,"teacher_disagreement_score":0.5484279,"about_ca_system_score_codex":0.00008732273,"about_ca_system_score_gemma":0.000049256912,"threshold_uncertainty_score":0.5107277},"labels":[],"label_agreement":null},{"id":"W4390988957","doi":"10.25318/82-003-x202400100002-eng","title":"Factors associated with shingles and pneumococcal vaccination among older Canadians","year":2024,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Statistics Canada","funders":"","keywords":"Shingles; Medicine; Vaccination; Socioeconomic status; Receipt; Population; Odds; Pneumococcal vaccine; Logistic regression; Odds ratio; Demography; Pediatrics; Family medicine; Gerontology; Environmental health; Immunology; Internal medicine; Streptococcus pneumoniae","score_opus":0.027187765975689178,"score_gpt":0.23312647700103584,"score_spread":0.20593871102534667,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390988957","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99526626,0.00009219607,0.00001806012,0.0011427883,0.00017936705,0.00045418358,0.000012726467,0.00017352203,0.002660871],"genre_scores_gemma":[0.998265,0.0000050598965,4.0706541e-7,0.00012483305,0.00006453299,0.0002483113,0.00001825004,0.000019331012,0.0012542435],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993759,0.000021935364,0.00009341808,0.00017015492,0.00011158089,0.00022700518],"domain_scores_gemma":[0.9995937,0.00007129035,0.000019635308,0.0000719601,0.00003299877,0.00021045493],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000100454185,0.00009850496,0.00012294306,0.00015807046,0.0000892429,0.00006778331,0.000021325457,0.00008043855,0.000023160626],"category_scores_gemma":[0.00010201012,0.000066059314,0.00003189275,0.00021170666,0.000032641758,0.00012491805,0.000007506883,0.00016429754,0.0000014058845],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000002075429,0.00004143579,0.98346984,0.000048857684,0.00016619619,0.000053086027,0.00044887542,0.000003617534,0.00024380094,0.00008590649,0.00030427435,0.015132032],"study_design_scores_gemma":[0.00023633135,0.000030064542,0.99680644,0.000045223358,0.00010932395,0.000008782728,0.00010121888,0.000089981186,0.00013088972,0.000014806315,0.0023425608,0.00008439154],"about_ca_topic_score_codex":0.00025485348,"about_ca_topic_score_gemma":0.0046062344,"teacher_disagreement_score":0.015047641,"about_ca_system_score_codex":0.00014696916,"about_ca_system_score_gemma":0.00005982913,"threshold_uncertainty_score":0.26938206},"labels":[],"label_agreement":null},{"id":"W4391616885","doi":"10.1016/j.carbpol.2024.121928","title":"Formation and immunological evaluation of Moraxella catarrhalis glycoconjugates based on synthetic oligosaccharides","year":2024,"lang":"en","type":"article","venue":"Carbohydrate Polymers","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"University of Cape Town; Science Foundation Ireland","keywords":"Glycoconjugate; Lipid A; Moraxella catarrhalis; Glycan; Residue (chemistry); Chemistry; Antigen; Biochemistry; Glycoprotein; Microbiology; Biology; Bacteria; Streptococcus pneumoniae; Immunology; Antibiotics","score_opus":0.02837444381057688,"score_gpt":0.29308585869024284,"score_spread":0.264711414879666,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391616885","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9921628,0.0024893594,0.000056439047,0.001596544,0.00029356952,0.0003311984,0.000024174726,0.00008453866,0.0029613236],"genre_scores_gemma":[0.9994959,0.000094706804,0.000007401763,0.00023880457,0.000038989027,0.00005099758,0.000030900697,0.000012394691,0.000029885236],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991348,0.00008570539,0.00020963402,0.00018087114,0.0002530385,0.00013600137],"domain_scores_gemma":[0.99953705,0.00009451298,0.000042419946,0.0001758239,0.0000817447,0.00006842197],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029729446,0.00011904106,0.00017235815,0.00026208907,0.0000637147,0.00002617628,0.00003241353,0.0000899394,0.00013925182],"category_scores_gemma":[0.000091874055,0.000089354086,0.00007586103,0.00024315945,0.00013577164,0.00008787962,0.000010623045,0.00012112269,0.0000214569],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004774446,0.0000670757,0.0003422252,0.00019021888,0.00007087622,0.000016429532,0.00032442604,0.0004309933,0.97230774,0.0004791584,0.000040258474,0.025682839],"study_design_scores_gemma":[0.0011881104,0.0008468336,0.0040660785,0.0007904502,0.0009753444,0.00008207467,0.00043211316,0.3828098,0.6066561,0.00033241598,0.0015463157,0.0002743665],"about_ca_topic_score_codex":0.000046620084,"about_ca_topic_score_gemma":0.000002592677,"teacher_disagreement_score":0.38237882,"about_ca_system_score_codex":0.00007003373,"about_ca_system_score_gemma":0.00012652608,"threshold_uncertainty_score":0.36437538},"labels":[],"label_agreement":null},{"id":"W4391659537","doi":"10.1080/21645515.2024.2305522","title":"Antenatal tetanus, diphtheria, and acellular pertussis (Tdap) immunization and risk of serogroup 19 IPD in children: An indirect cohort study","year":2024,"lang":"en","type":"article","venue":"Human Vaccines & Immunotherapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval; Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine; Centre hospitalier de l'Université Laval; McGill University","funders":"Fonds de Recherche du Québec - Santé; Centre Hospitalier Universitaire de Québec; Université Laval","keywords":"Diphtheria; Medicine; Tetanus; Immunization; Pediatrics; Cohort; Whooping cough; Vaccination; Cohort study; Virology; Immunology; Antibody; Internal medicine","score_opus":0.012761269876245922,"score_gpt":0.2841452182136225,"score_spread":0.27138394833737656,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391659537","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9885307,0.01012282,0.000026128597,0.000053501204,0.00010415895,0.0009824085,0.00002119694,0.00010279751,0.00005628914],"genre_scores_gemma":[0.9967946,0.0027566303,0.00002440299,0.00007558155,0.000074938085,0.00003258011,0.00006136385,0.00006269988,0.000117195006],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99855363,0.00021168224,0.00046118692,0.00037617085,0.00018066814,0.0002166837],"domain_scores_gemma":[0.99924266,0.000055683915,0.00011152463,0.00044927277,0.00006519493,0.0000756627],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004529632,0.000262645,0.00045994596,0.00038180608,0.00021816703,0.000080470636,0.00009667518,0.00013152968,0.00007183966],"category_scores_gemma":[0.000019817753,0.00021086732,0.00006648666,0.00042727252,0.00008810841,0.00019340917,0.000058309626,0.00034110996,0.0000020220223],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005222512,0.0006184895,0.9487859,0.000064668915,0.0008417157,0.000027449545,0.0024170072,0.000004866528,0.042970788,0.000031801446,0.0000026541004,0.0041824505],"study_design_scores_gemma":[0.0018600279,0.0010211268,0.99360275,0.000114294366,0.0006702499,0.00022954488,0.0007595744,0.00041649537,0.00066767115,0.000043210515,0.00040052264,0.00021450217],"about_ca_topic_score_codex":0.00043955358,"about_ca_topic_score_gemma":0.00014468034,"teacher_disagreement_score":0.044816896,"about_ca_system_score_codex":0.000050276816,"about_ca_system_score_gemma":0.000048383838,"threshold_uncertainty_score":0.85989195},"labels":[],"label_agreement":null},{"id":"W4391683671","doi":"10.3390/vaccines12020179","title":"Mortality of Invasive Pneumococcal Disease following Introduction of the 13-Valent Pneumococcal Conjugate Vaccine in Greenland","year":2024,"lang":"en","type":"article","venue":"Vaccines","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Danmarks Frie Forskningsfond; Aase og Ejnar Danielsens Fond","keywords":"Medicine; Pneumococcal conjugate vaccine; Case fatality rate; Pediatrics; Incidence (geometry); Comorbidity; Mortality rate; Pneumococcal disease; Conjugate vaccine; Demography; Epidemiology; Streptococcus pneumoniae; Internal medicine; Immunology; Immunization; Antibiotics","score_opus":0.015254671004099673,"score_gpt":0.2859557677660022,"score_spread":0.2707010967619025,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391683671","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9922412,0.0005603914,0.0000111211575,0.005218546,0.0011633647,0.0005813126,0.000025858375,0.00005255116,0.00014566073],"genre_scores_gemma":[0.99905646,0.00010277091,0.000003301221,0.0000682956,0.000518987,0.00003952625,0.000013930082,0.000022102322,0.00017463762],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998555,0.00010171492,0.00057166134,0.00032667854,0.00024018729,0.00020474655],"domain_scores_gemma":[0.99912524,0.00010775271,0.00010503852,0.00044977062,0.000092942704,0.00011924399],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027889118,0.00018458428,0.00041931274,0.00023654639,0.000055698813,0.000011858109,0.00011153329,0.00007891793,0.00006077613],"category_scores_gemma":[0.0003377149,0.00011717665,0.00033773654,0.0006824331,0.000035768404,0.00012713883,0.00007959657,0.00026109407,0.00000824077],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008882339,0.00017320304,0.7100491,0.000506244,0.00013750953,0.00005341005,0.0001267799,0.00015403063,0.28815076,0.0001223941,0.00020096792,0.00023677065],"study_design_scores_gemma":[0.0008815158,0.00013192842,0.97820044,0.00041711266,0.0003729129,0.00003069516,0.00006134977,0.00025484714,0.017754063,0.0002625747,0.0015226083,0.00010995071],"about_ca_topic_score_codex":0.00012187257,"about_ca_topic_score_gemma":0.0003442021,"teacher_disagreement_score":0.2703967,"about_ca_system_score_codex":0.000057957874,"about_ca_system_score_gemma":0.00023422981,"threshold_uncertainty_score":0.4778325},"labels":[],"label_agreement":null},{"id":"W4391750955","doi":"10.1016/j.vaccine.2024.02.023","title":"Minimal interval for the administration of a pneumococcal polysaccharide vaccine following the administration of a pneumococcal conjugate vaccine","year":2024,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Institut National de Santé Publique du Québec; Université Laval","funders":"","keywords":"Pneumococcal conjugate vaccine; Administration (probate law); Streptococcus pneumoniae; Medicine; Pneumococcal polysaccharide vaccine; Pneumococcal infections; Pneumococcal disease; Virology; Conjugate; Pneumococcal vaccine; Immunology; Microbiology; Biology; Antibiotics; Political science; Mathematics","score_opus":0.020096644326977855,"score_gpt":0.3140311326830126,"score_spread":0.29393448835603475,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391750955","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97274,0.0009807716,0.0017377647,0.02122656,0.0011149131,0.0018172247,0.00009315402,0.00013372219,0.00015587584],"genre_scores_gemma":[0.9979456,0.00008756312,0.00007624955,0.00031058045,0.00073691463,0.00027278898,0.000052594485,0.0000607596,0.0004569577],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9974318,0.000103808685,0.0012173988,0.00047007718,0.00037133356,0.00040555093],"domain_scores_gemma":[0.9977336,0.0009248005,0.00030608985,0.0006318959,0.00025093622,0.00015270946],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008372902,0.00037152227,0.0007009918,0.00025110794,0.00024297957,0.00006983098,0.00029253823,0.00019460646,0.0001460409],"category_scores_gemma":[0.00041282893,0.00021332069,0.00070652796,0.0006793606,0.000029356243,0.0002161732,0.000080423655,0.00044866846,0.00001623571],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0037522234,0.00045479098,0.00551647,0.0006093107,0.0008766124,0.00009079168,0.0005062233,0.000021601638,0.9826639,0.00094679,0.0009560275,0.0036052174],"study_design_scores_gemma":[0.010970414,0.01669683,0.4462948,0.0020367831,0.0057180636,0.0024771052,0.0019600638,0.020029156,0.4427336,0.0006791379,0.049446836,0.0009571962],"about_ca_topic_score_codex":0.000036635996,"about_ca_topic_score_gemma":0.00020845725,"teacher_disagreement_score":0.53993034,"about_ca_system_score_codex":0.00007047899,"about_ca_system_score_gemma":0.00054426934,"threshold_uncertainty_score":0.8698965},"labels":[],"label_agreement":null},{"id":"W4391781527","doi":"10.1016/j.vaccine.2024.01.104","title":"Immunization with a whole cell vaccine reduces pneumococcal nasopharyngeal density and shedding, and middle ear infection in mice","year":2024,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Infection and Immunity; Murdoch Children's Research Institute; University of Melbourne; Medical Research Council; Children’s Hospital of Wisconsin Research Institute; Meso Scale Diagnostics; National Health and Medical Research Council; State Government of Victoria; Pfizer","keywords":"Streptococcus pneumoniae; Vaccination; Pneumococcal infections; Carriage; Immunology; Pneumococcal conjugate vaccine; Medicine; Immunization; Immune system; Otitis; Pneumococcal vaccine; Serotype; Virology; Biology; Microbiology; Antibiotics","score_opus":0.00938399030684126,"score_gpt":0.24311262527236527,"score_spread":0.233728634965524,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391781527","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996251,0.0014276525,0.000060240156,0.0013657722,0.00015102899,0.0003205599,0.0000029700898,0.00013011483,0.0002907019],"genre_scores_gemma":[0.99855137,0.0005823479,0.00005464292,0.00012366197,0.00015321627,0.00001789979,0.000021708445,0.000027128282,0.00046802935],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99916387,0.000042140586,0.00020571385,0.0003124093,0.00009473262,0.00018112214],"domain_scores_gemma":[0.9996247,0.00004746166,0.000037338134,0.00012174903,0.00005924559,0.00010945619],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000147058,0.00016436886,0.00024207529,0.00031468103,0.000112152455,0.000056545075,0.000023345367,0.00010110786,0.000031303065],"category_scores_gemma":[0.000027094598,0.00012586152,0.000025987383,0.0005053038,0.000011984133,0.0002111472,0.00004179848,0.00028878127,0.000015116568],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013655456,0.00014656922,0.45086697,0.00038058133,0.000041749827,0.00010531296,0.00043228775,0.000024671892,0.54664594,0.000026947097,0.00013335179,0.0010590594],"study_design_scores_gemma":[0.0020903181,0.0007980786,0.95524997,0.00055162987,0.00015261465,0.000645776,0.00007749289,0.0017595731,0.034317765,0.00003109104,0.0041399254,0.00018576924],"about_ca_topic_score_codex":0.00016596548,"about_ca_topic_score_gemma":0.000287057,"teacher_disagreement_score":0.5123282,"about_ca_system_score_codex":0.00005361421,"about_ca_system_score_gemma":0.0000582343,"threshold_uncertainty_score":0.5132484},"labels":[],"label_agreement":null},{"id":"W4391845332","doi":"10.1136/thorax-2023-220377","title":"Indirect impact of childhood 13-valent pneumococcal conjugate vaccine (PCV13) in Canadian older adults: a Canadian Immunization Research Network (CIRN) retrospective observational study","year":2024,"lang":"en","type":"article","venue":"Thorax","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Sinai Health System; BC Children's Hospital; University of Toronto; University Health Network; Public Health Ontario; University of British Columbia; Institute for Clinical Evaluative Sciences","funders":"Canadian Immunization Research Network; Ontario Ministry of Health and Long-Term Care","keywords":"Medicine; Pneumococcal conjugate vaccine; Pediatrics; Pneumonia; Observational study; Vaccination; Incidence (geometry); Pneumococcal pneumonia; Pneumococcal disease; Retrospective cohort study; Community-acquired pneumonia; Immunization; Streptococcus pneumoniae; Internal medicine; Immunology; Antibiotics","score_opus":0.04728232095522865,"score_gpt":0.37959053148647803,"score_spread":0.33230821053124937,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391845332","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99375343,0.00048785916,0.0000019534968,0.0012090208,0.00031551087,0.0018061392,0.00014072291,0.00005622312,0.0022291304],"genre_scores_gemma":[0.9989912,0.00005669385,0.000008529848,0.000109610686,0.00034395856,0.00011402145,0.00015063549,0.00004827642,0.00017710435],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9974439,0.00034400052,0.00048561426,0.00041691813,0.00042016496,0.0008894145],"domain_scores_gemma":[0.9982999,0.00011816705,0.00005375257,0.00039320835,0.00047084148,0.00066410867],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014860862,0.00021792078,0.0004291851,0.0013108484,0.00030089184,0.00005382992,0.0001497673,0.000177263,0.0003695323],"category_scores_gemma":[0.00030803145,0.00018697041,0.0001307411,0.002813095,0.00005849611,0.00015415812,0.00004150175,0.0009062111,0.000058029927],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059210153,0.00028744212,0.9932617,0.000047959635,0.00024333803,0.0002161412,0.0033475698,0.00032966372,0.00039267843,0.000111753965,0.00093106925,0.00077147165],"study_design_scores_gemma":[0.0010218294,0.0010176224,0.99489164,0.00066320354,0.0000598299,0.00004446141,0.00050835335,0.0009155145,0.00003145746,0.00011139996,0.00057257654,0.00016209907],"about_ca_topic_score_codex":0.85099417,"about_ca_topic_score_gemma":0.9652047,"teacher_disagreement_score":0.114210576,"about_ca_system_score_codex":0.0026663702,"about_ca_system_score_gemma":0.005519244,"threshold_uncertainty_score":0.9790902},"labels":[],"label_agreement":null},{"id":"W4391958052","doi":"10.1016/j.chest.2024.02.025","title":"Anaerobic Antibiotic Coverage in Aspiration Pneumonia and the Associated Benefits and Harms","year":2024,"lang":"en","type":"article","venue":"CHEST Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"St. Michael's Hospital; Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Canadian Frailty Network; University of Toronto","keywords":"Aspiration pneumonia; Intensive care medicine; Antibiotics; Pneumonia; Medicine; Anaerobic exercise; Anaerobic bacteria; Antibiotic therapy; Microbiology; Internal medicine; Biology; Physical therapy; Bacteria","score_opus":0.017093064795548143,"score_gpt":0.25897095777340906,"score_spread":0.24187789297786091,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391958052","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9901908,0.0038243982,0.000024397972,0.0051315897,0.0002721796,0.00012880556,0.000002605024,0.000025403206,0.0003998177],"genre_scores_gemma":[0.9974769,0.001702239,0.000006854331,0.00053075585,0.00014863625,0.0000015054361,0.0000019346544,0.000011317634,0.00011989294],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993736,0.00006446443,0.0001939907,0.00011515703,0.00011383304,0.00013892225],"domain_scores_gemma":[0.99967873,0.00009305105,0.00004492187,0.000060501363,0.000033763612,0.00008900546],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047878159,0.00008922015,0.00016590735,0.00013312322,0.0001618237,0.00017280226,0.000026034817,0.00007552573,0.00001358362],"category_scores_gemma":[0.00013417547,0.00005323592,0.00004378413,0.00021276213,0.00009799893,0.00013041083,0.000016177462,0.00047077285,0.0000075288335],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016063922,0.00036080534,0.6810756,0.0004956663,0.0005286267,0.001321144,0.0040388126,0.00024281672,0.17683423,0.003202482,0.0007009583,0.13103825],"study_design_scores_gemma":[0.0021815824,0.00022431712,0.9892929,0.00055582996,0.00012766774,0.0016996984,0.00007138124,0.0012919495,0.0003782053,0.00028633588,0.0037974084,0.00009271188],"about_ca_topic_score_codex":0.00000940759,"about_ca_topic_score_gemma":0.000037336344,"teacher_disagreement_score":0.30821735,"about_ca_system_score_codex":0.00006517768,"about_ca_system_score_gemma":0.000078366524,"threshold_uncertainty_score":0.21708977},"labels":[],"label_agreement":null},{"id":"W4391967344","doi":"10.1503/cmaj.230628-f","title":"Pneumonie d’aspiration","year":2024,"lang":"en","type":"article","venue":"Canadian Medical Association Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Medicine; Gynecology; Humanities; Philosophy","score_opus":0.008402740037816854,"score_gpt":0.2599073040028398,"score_spread":0.2515045639650229,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391967344","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5117699,0.0013295854,0.00056983664,0.38554922,0.008679175,0.00030157279,0.000029446042,0.00029300372,0.09147827],"genre_scores_gemma":[0.97052556,0.00011856618,0.000017477827,0.022259526,0.0038000215,0.000006871729,0.000007673692,0.000019788718,0.003244486],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983756,0.00006284098,0.00028041805,0.000118317075,0.00085169444,0.00031114562],"domain_scores_gemma":[0.99812037,0.000073738534,0.00004287416,0.000066549874,0.00021081477,0.0014856554],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0008280174,0.00008299031,0.0001336843,0.00030599392,0.00023887437,0.00015084591,0.00005733993,0.00032011897,0.004372166],"category_scores_gemma":[0.00074113405,0.00006803811,0.00012977717,0.0003279504,0.000021994387,0.00013324924,0.0000045920237,0.0010096317,0.0011450092],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000006414635,0.00008655655,0.14462934,0.0000919883,0.00060465146,0.008886634,0.00056024163,0.000011569165,0.002917184,0.0039920066,0.4837044,0.35450903],"study_design_scores_gemma":[0.00023612629,0.0000971591,0.027504994,0.00012915304,0.000048949456,0.002819439,0.00005966327,0.0005899937,0.00002451967,0.00014281824,0.96827096,0.000076205215],"about_ca_topic_score_codex":0.00029345066,"about_ca_topic_score_gemma":0.0039569703,"teacher_disagreement_score":0.4845666,"about_ca_system_score_codex":0.0011012661,"about_ca_system_score_gemma":0.004779211,"threshold_uncertainty_score":0.9996327},"labels":[],"label_agreement":null},{"id":"W4392111386","doi":"10.1093/jpids/piae015","title":"Features Associated With Radiographic Pneumonia in Children with SARS-CoV-2","year":2024,"lang":"en","type":"letter","venue":"Journal of the Pediatric Infectious Diseases Society","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Children's Hospital Research Institute of Manitoba; Stollery Children's Hospital; Izaak Walton Killam Health Centre; Dalhousie University; McMaster Children's Hospital; Western University; Children’s Health Research Institute; Hospital for Sick Children; University of British Columbia; University of Calgary; Children's Hospital of Eastern Ontario; Public Health Agency of Canada; University of Ottawa","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; University of California, San Francisco; Alberta Children's Hospital Research Institute; Health Resources and Services Administration; Cincinnati Children's Hospital Medical Center; University of California, Davis; Alberta Innovates; Astellas Pharma; Alberta Children's Hospital Foundation; National Institutes of Health; Children's Hospital Foundation; National Heart, Lung, and Blood Institute; Pfizer; Alberta Health Services; Patient-Centered Outcomes Research Institute","keywords":"Medicine; Pneumonia; Radiography; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Hypoxemia; 2019-20 coronavirus outbreak; Viral pneumonia; Pediatrics; Intensive care medicine; Internal medicine; Virology; Radiology; Disease; Infectious disease (medical specialty)","score_opus":0.006747381163258137,"score_gpt":0.23458589249167472,"score_spread":0.2278385113284166,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392111386","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9213686,0.0027057095,0.000005716698,0.073738486,0.00091931055,0.0007888405,0.00016100607,0.00013179587,0.00018054554],"genre_scores_gemma":[0.8056589,0.0017208054,0.000008061264,0.18333328,0.0086474875,0.000043121312,0.0000472047,0.00019602398,0.00034513455],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99711186,0.00023628814,0.00064162124,0.0003847653,0.0010648331,0.0005606219],"domain_scores_gemma":[0.9978747,0.00016247042,0.0010099082,0.00044920735,0.0003777826,0.0001259265],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0002544281,0.00058548985,0.00096035626,0.00060720264,0.0002715687,0.000135721,0.00031866762,0.00079580507,0.0000070470296],"category_scores_gemma":[0.000119484,0.00030790083,0.0017782438,0.002605634,0.0002563322,0.00014282187,0.000072942654,0.0054957955,0.0000053286585],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019881165,0.0002407308,0.6078538,0.00015426464,0.0018492623,0.00029424115,0.000079196885,0.000044653643,0.000040576222,5.5661616e-7,0.38940457,0.00001829288],"study_design_scores_gemma":[0.0038084842,0.001544351,0.9339362,0.0008959199,0.016448237,0.027404195,0.000026838425,0.000009256228,0.000007231734,0.00013418747,0.015087657,0.0006974574],"about_ca_topic_score_codex":0.000051085164,"about_ca_topic_score_gemma":0.000034491288,"teacher_disagreement_score":0.3743169,"about_ca_system_score_codex":0.00065457734,"about_ca_system_score_gemma":0.0013983913,"threshold_uncertainty_score":0.9999373},"labels":[],"label_agreement":null},{"id":"W4392298757","doi":"10.14745/ccdr.v50i12a04","title":"PCV13, PCV15 or PCV20: Which vaccine is best for children in terms of immunogenicity?","year":2024,"lang":"en","type":"article","venue":"Canada Communicable Disease Report","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire de Sherbrooke; Université Laval","funders":"","keywords":"Immunogenicity; Virology; Medicine; Immunology; Immune system","score_opus":0.01905912584679999,"score_gpt":0.30027610752193235,"score_spread":0.28121698167513237,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392298757","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97177905,0.0027734325,0.00003525229,0.009899785,0.0005417768,0.0075492994,0.0005418005,0.0001288435,0.006750762],"genre_scores_gemma":[0.99421537,0.0001700923,0.00004109494,0.00092233747,0.00007942448,0.0011972099,0.00023509792,0.00004930816,0.0030900945],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982724,0.00004854657,0.00073633995,0.00030979895,0.00030314643,0.00032973758],"domain_scores_gemma":[0.997801,0.00015296417,0.00012777292,0.0014500361,0.00013064782,0.0003375611],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027488216,0.00021114663,0.00049408124,0.00017396935,0.00013725516,0.000024550523,0.0002464308,0.000083166706,0.00019693114],"category_scores_gemma":[0.00035945073,0.00016557069,0.00017379537,0.0006336818,0.000042520285,0.00009141755,0.00012646061,0.0003143141,0.000003247794],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010046149,0.0012275006,0.9108464,0.0019122832,0.0012738665,0.0054421523,0.00014199516,0.0001105578,0.0065150675,0.00023594864,0.06730668,0.0039829398],"study_design_scores_gemma":[0.0032865605,0.0003887951,0.42116255,0.0018505913,0.0009888306,0.0022315115,0.00012706379,0.0013670682,0.0018255389,0.00022499799,0.56596565,0.0005808535],"about_ca_topic_score_codex":0.14214683,"about_ca_topic_score_gemma":0.38332012,"teacher_disagreement_score":0.49865896,"about_ca_system_score_codex":0.0003330487,"about_ca_system_score_gemma":0.00427598,"threshold_uncertainty_score":0.8635657},"labels":[],"label_agreement":null},{"id":"W4392298875","doi":"10.1139/cjm-2023-0155","title":"High diversity within and low but significant genetic differentiation among geographic and temporal populations of the global <i>Streptococcus pneumoniae</i>","year":2024,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Multilocus sequence typing; Linkage disequilibrium; Genetic diversity; Genetics; Evolutionary biology; Genetic variation; Streptococcus pneumoniae; Population; Biological dispersal; Population genetics; Genetic structure; Genotype; Haplotype; Gene; Demography","score_opus":0.0099434883421351,"score_gpt":0.20964190121286572,"score_spread":0.19969841287073062,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392298875","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974937,0.0005862424,0.00003309026,0.0009395455,0.0006430011,0.00014110176,0.0001496739,0.000004480355,0.000009174812],"genre_scores_gemma":[0.999768,0.000021569274,0.000018260229,0.00010718896,0.000054828204,8.272737e-7,0.0000058828687,0.0000045316783,0.000018895891],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99940264,0.00006933423,0.00025505896,0.000107051805,0.00003394883,0.00013198052],"domain_scores_gemma":[0.9994695,0.000017561788,0.0001328292,0.000085820226,0.000080247955,0.00021402216],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000086394844,0.00008613424,0.00018687181,0.00015389646,0.00019964375,0.000017513927,0.00006247589,0.00010027344,0.000014919027],"category_scores_gemma":[0.00002649358,0.000057962166,0.00008056278,0.00015901469,0.00037745837,0.000037536774,0.000029564853,0.00019152487,5.0607997e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000031668558,0.000008307917,0.92343616,0.000033832293,0.000071144124,0.00004988459,0.000105691295,0.000017655826,0.07594899,0.00011106927,0.0000670811,0.00014698072],"study_design_scores_gemma":[0.00026892946,0.00014884051,0.99729896,0.00012977362,0.00019060905,0.0006913941,0.00006651946,0.000024180297,0.00063877896,0.00029993622,0.00018608454,0.000056014316],"about_ca_topic_score_codex":0.0041753976,"about_ca_topic_score_gemma":0.025544325,"teacher_disagreement_score":0.075310215,"about_ca_system_score_codex":0.00006796835,"about_ca_system_score_gemma":0.00036057233,"threshold_uncertainty_score":0.992237},"labels":[],"label_agreement":null},{"id":"W4392636482","doi":"","title":"Antimicrobial therapy for community-acquired pneumonia in adults","year":2002,"lang":"en","type":"article","venue":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Científicas)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Pneumonia; Antimicrobial; Medicine; Intensive care medicine; Community-acquired pneumonia; Internal medicine; Microbiology; Biology","score_opus":0.033037837358766524,"score_gpt":0.265013199949305,"score_spread":0.23197536259053847,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392636482","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9345554,0.00030557223,0.00044694488,0.02865699,0.00081953144,0.0015226443,0.00007171775,0.0004103525,0.033210848],"genre_scores_gemma":[0.9965753,0.0003252549,0.0005952468,0.0012404737,0.0004420221,0.0003812736,0.00011235208,0.0000612713,0.00026682962],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99746966,0.0003840101,0.0006555223,0.00046717506,0.00035933132,0.00066428876],"domain_scores_gemma":[0.998225,0.00025545034,0.00021384213,0.0006165193,0.00032902468,0.00036020705],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00047842262,0.00038155905,0.00053423695,0.0005472552,0.0007985482,0.00008884436,0.0003303982,0.00046739625,0.00005106455],"category_scores_gemma":[0.00035741177,0.0003529461,0.00029531473,0.0006712533,0.00003531958,0.00027051358,0.000085624815,0.00067685696,0.000019127257],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0042026513,0.018380502,0.036721375,0.0014196938,0.0008947179,0.0009765739,0.01802887,0.00021537104,0.53280646,0.34918866,0.008416465,0.028748699],"study_design_scores_gemma":[0.0063900203,0.00043377845,0.037234917,0.0003843146,0.000050709164,0.0018028865,0.00029346868,0.0007961368,0.0025944014,0.000084559666,0.94947845,0.00045633997],"about_ca_topic_score_codex":0.000002773369,"about_ca_topic_score_gemma":0.00016517898,"teacher_disagreement_score":0.94106203,"about_ca_system_score_codex":0.00044224592,"about_ca_system_score_gemma":0.00021298561,"threshold_uncertainty_score":0.99989223},"labels":[],"label_agreement":null},{"id":"W4392740706","doi":"10.2139/ssrn.4754908","title":"Global Serotype Distribution of Remaining Invasive Pneumococcal Disease after Extensive Use of Pcv10/13: The Pserenade Project","year":2024,"lang":"en","type":"preprint","venue":"SSRN Electronic Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; University of Calgary; University of Toronto","funders":"","keywords":"Serotype; Pneumococcal disease; Distribution (mathematics); Geography; Disease; Virology; Medicine; Biology; Microbiology; Streptococcus pneumoniae; Internal medicine; Mathematics","score_opus":0.023884822122162905,"score_gpt":0.29645532554939885,"score_spread":0.27257050342723593,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392740706","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9910728,0.0038627712,0.00051114766,0.0023561772,0.00066676666,0.00095730554,0.0004407335,0.000041698968,0.00009065421],"genre_scores_gemma":[0.9958478,0.0029963627,0.000008704914,0.00015864862,0.00052953325,0.000076436634,0.000095734125,0.000039069557,0.00024770113],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9967269,0.00027569217,0.00076926587,0.0004200534,0.00053499645,0.0012731034],"domain_scores_gemma":[0.99788254,0.00013171417,0.00056853023,0.0005561753,0.0006732982,0.00018774786],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0007595716,0.00038582706,0.00063271984,0.00016298129,0.00014062705,0.000063836655,0.00023224013,0.00029465568,0.000014145808],"category_scores_gemma":[0.00073483586,0.00025034053,0.00067703327,0.00043860482,0.00026330646,0.00008554034,0.00041192654,0.00411279,0.000009527177],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.013976665,0.0032904954,0.8047557,0.009373142,0.021252455,0.0026675132,0.0037699093,0.006392487,0.028588766,0.08296142,0.0042781364,0.018693304],"study_design_scores_gemma":[0.0027976637,0.003335839,0.7234182,0.009768144,0.00917452,0.006634094,0.0032315967,0.00067993026,0.00083411933,0.23362641,0.005224049,0.0012754364],"about_ca_topic_score_codex":0.00025104822,"about_ca_topic_score_gemma":0.00092962047,"teacher_disagreement_score":0.150665,"about_ca_system_score_codex":0.0016041406,"about_ca_system_score_gemma":0.016480463,"threshold_uncertainty_score":0.9999949},"labels":[],"label_agreement":null},{"id":"W4392952743","doi":"10.2139/ssrn.4763116","title":"Global Impact of 10- and 13-Valent Pneumococcal Conjugate Vaccines on Invasive Pneumococcal Disease in All Ages: The PSERENADE Project","year":2024,"lang":"en","type":"preprint","venue":"SSRN Electronic Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Institute of Infection and Immunity; University of Toronto; University of Calgary","funders":"","keywords":"Pneumococcal disease; Pneumococcal conjugate vaccine; Conjugate; Medicine; Disease; Streptococcus pneumoniae; Virology; Microbiology; Biology; Internal medicine; Mathematics","score_opus":0.024431797038364726,"score_gpt":0.34112922532374135,"score_spread":0.3166974282853766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392952743","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98826826,0.0052261567,0.000005826325,0.0038943468,0.00042283593,0.0013879188,0.00014617483,0.000055174365,0.000593321],"genre_scores_gemma":[0.98823583,0.010435828,0.0000013777175,0.00016182015,0.0006042804,0.00010001136,0.000040888743,0.000058939615,0.0003610339],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99576515,0.00036516934,0.00085127255,0.0006436715,0.0004870517,0.0018876975],"domain_scores_gemma":[0.9983491,0.00017211385,0.00041035045,0.0005367846,0.00017353475,0.00035815962],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0011213847,0.00063723413,0.0008579055,0.00045754635,0.00014369951,0.000114399685,0.00035293392,0.00034127012,0.0000401202],"category_scores_gemma":[0.00033528835,0.00037548016,0.0007953258,0.00038993635,0.00017980083,0.00006514018,0.00043247815,0.005573925,0.000023003124],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.010248596,0.0050133164,0.8679864,0.0050306767,0.017218787,0.0031485467,0.0031191383,0.012459302,0.042670816,0.014125302,0.0026958687,0.016283244],"study_design_scores_gemma":[0.0044777156,0.00618807,0.86471486,0.003757609,0.002533147,0.0040347488,0.0007941957,0.00068779325,0.00013518336,0.1107467,0.000937985,0.0009920052],"about_ca_topic_score_codex":0.0008057421,"about_ca_topic_score_gemma":0.0034358574,"teacher_disagreement_score":0.096621394,"about_ca_system_score_codex":0.0027516417,"about_ca_system_score_gemma":0.013149881,"threshold_uncertainty_score":0.9998697},"labels":[],"label_agreement":null},{"id":"W4393022915","doi":"10.1101/2024.03.14.24304296","title":"Cost-effectiveness of PCV20 to Prevent Pneumococcal Disease in the Pediatric Population - A German Societal Perspective Analysis","year":2024,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer","keywords":"Perspective (graphical); German; Pneumococcal disease; Population; Medicine; Cost analysis; Cost-effectiveness analysis; Intensive care medicine; Economics; Environmental health; Risk analysis (engineering); Geography; Computer science; Operations research; Cost effectiveness; Streptococcus pneumoniae; Mathematics; Biology","score_opus":0.03671894295025189,"score_gpt":0.38059821393402604,"score_spread":0.34387927098377413,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4393022915","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99487853,0.00041221283,0.00014148178,0.0012900347,0.000352702,0.0025503892,0.000109550514,0.000054257962,0.00021081978],"genre_scores_gemma":[0.99855965,0.000043398788,0.000008885866,0.00008761531,0.00030732944,0.0008395984,0.00007620365,0.000027374006,0.000049968432],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99771327,0.0005901747,0.00041684456,0.0005936926,0.00045504258,0.0002309648],"domain_scores_gemma":[0.9987105,0.000215955,0.0001335847,0.00059433526,0.00015822178,0.00018741617],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009311569,0.00027468932,0.0006256336,0.000867338,0.00006287066,0.0000319101,0.00019298166,0.00018044513,0.000026699441],"category_scores_gemma":[0.00022382845,0.00019060084,0.00079067226,0.0017107979,0.000047186502,0.000025706953,0.00028360396,0.00084366516,0.000025895326],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009217301,0.0007659462,0.9885034,0.0012579861,0.00071989844,0.00011834361,0.0022840893,0.0042066295,0.0014971023,0.00046816678,0.000013887331,0.00007235637],"study_design_scores_gemma":[0.00020153374,0.00009618321,0.9916049,0.0001901374,0.004641041,0.0000053553194,0.00017337578,0.00071899785,0.000047257316,0.002106972,0.000038482318,0.00017575485],"about_ca_topic_score_codex":0.00031159332,"about_ca_topic_score_gemma":0.00007490342,"teacher_disagreement_score":0.003921143,"about_ca_system_score_codex":0.0004233226,"about_ca_system_score_gemma":0.00028481337,"threshold_uncertainty_score":0.77724767},"labels":[],"label_agreement":null},{"id":"W4393150356","doi":"10.21608/zumj.2024.273951.3222","title":"Epidemiology and Clinical Characterstics of Community Aquired Pneumonia in childhood at Zagazig University Hospitals","year":2024,"lang":"en","type":"article","venue":"Zagazig University Medical Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Epidemiology; Pneumonia; University hospital; Clinical epidemiology; Pediatrics; Family medicine; Gerontology; Environmental health; Internal medicine","score_opus":0.03464909301000487,"score_gpt":0.322850266319459,"score_spread":0.28820117330945416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4393150356","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99039286,0.000165953,0.0002666324,0.0065072337,0.00064753543,0.00014252095,0.000034157176,0.000053955813,0.0017891342],"genre_scores_gemma":[0.9946609,0.0038212114,0.000069647715,0.0006124552,0.00019257322,3.819245e-8,0.000012950614,0.000013028147,0.000617156],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99710494,0.0014341086,0.0005543648,0.00021858989,0.0003225669,0.00036541102],"domain_scores_gemma":[0.9968944,0.0016698004,0.00019553512,0.0002608032,0.00010831327,0.00087112805],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0025490264,0.00017994049,0.0007106138,0.00046084428,0.00037605228,0.000006409541,0.00027956805,0.0004765827,0.0002585414],"category_scores_gemma":[0.0016073945,0.00016484775,0.00029749976,0.0004292565,0.0009654254,0.00020076876,0.0003151727,0.002458312,0.000037109083],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020642878,0.0007987706,0.9814396,0.00014214612,0.00044161722,0.0029913008,0.001137055,0.0000023114428,0.0006238455,0.0010820307,0.0014691396,0.0096657695],"study_design_scores_gemma":[0.0019588466,0.00073096564,0.96823895,0.000492924,0.0002751743,0.002175439,0.0009216142,0.00023802463,0.000007661877,0.00011608761,0.024704797,0.00013951954],"about_ca_topic_score_codex":0.000066344845,"about_ca_topic_score_gemma":0.00011811331,"teacher_disagreement_score":0.023235658,"about_ca_system_score_codex":0.00036915627,"about_ca_system_score_gemma":0.0006314072,"threshold_uncertainty_score":0.99984306},"labels":[],"label_agreement":null},{"id":"W4393355111","doi":"10.1101/2024.03.29.587239","title":"A comprehensive two-hybrid analysis to explore the <i>L. pneumophila</i> effector-effector interactome","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; University of Toronto","funders":"","keywords":"Effector; Interactome; Computational biology; Biology; Computer science; Cell biology; Genetics; Gene","score_opus":0.026728200244896395,"score_gpt":0.28346538330206056,"score_spread":0.25673718305716414,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4393355111","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98616266,0.0013732266,0.00039231297,0.0034743128,0.0039674616,0.0028393397,0.0006701572,0.0010807506,0.000039770723],"genre_scores_gemma":[0.9921624,0.00012042294,0.00015745628,0.004050208,0.0017585688,0.0014519446,0.0000036051229,0.00027350974,0.000021860576],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99507356,0.00044898316,0.00092301355,0.0017953347,0.0008250857,0.0009339998],"domain_scores_gemma":[0.99460435,0.0004696301,0.000356079,0.0028446254,0.0008574233,0.00086789735],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005509346,0.0011729273,0.0017436906,0.0015739651,0.00035671526,0.00047265308,0.0007288895,0.00042270785,0.000101354584],"category_scores_gemma":[0.00030600152,0.0008731888,0.0013518294,0.0030805913,0.00022948679,0.00009174745,0.0014580488,0.0027306564,0.0019274498],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010189871,0.0002783504,0.0078772,0.0012652619,0.0062305126,0.0008682055,0.000074132186,0.0006891014,0.9786195,0.000045100976,0.003945927,0.0000048030133],"study_design_scores_gemma":[0.0026191866,0.0011651767,0.36968106,0.004140475,0.024854753,0.0000028314837,0.000040976778,0.0028637266,0.34960997,0.000009560824,0.24115993,0.003852364],"about_ca_topic_score_codex":0.00009993014,"about_ca_topic_score_gemma":0.000006514764,"teacher_disagreement_score":0.62900954,"about_ca_system_score_codex":0.00063395576,"about_ca_system_score_gemma":0.0006929851,"threshold_uncertainty_score":0.9995701},"labels":[],"label_agreement":null},{"id":"W4393869573","doi":"10.1017/cts.2024.271","title":"297 Antibiotic prescribing for inpatients with community-acquired bacterial pneumonia (CABP) due to methicillin-resistant Staphylococcus aureus (MRSA) in the All of Us database: Are there differences by age, sex, race, and ethnicity?","year":2024,"lang":"en","type":"article","venue":"Journal of Clinical and Translational Science","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Centre for Applied Research in Cancer Control; Northwestern University","keywords":"Staphylococcus aureus; Antibiotics; Medicine; Pneumonia; Microbiology; Biology; Internal medicine; Bacteria","score_opus":0.09862350796259088,"score_gpt":0.3848075731847996,"score_spread":0.2861840652222087,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4393869573","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949152,0.00033563588,0.00073205424,0.0033284782,0.00015966714,0.00032574983,0.00016237015,0.0000043895,0.000036458234],"genre_scores_gemma":[0.9989621,0.00011517272,0.00043284218,0.00038703365,0.00007998483,0.0000027330493,0.000006128224,0.000005419429,0.0000086097825],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9981739,0.0002986073,0.0006819942,0.00017157788,0.00051742786,0.00015649882],"domain_scores_gemma":[0.99779993,0.0015690491,0.0001998489,0.00012152836,0.00015184096,0.00015781738],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002915117,0.000110393994,0.0004241279,0.00013693735,0.00020713745,0.00007649587,0.00018842325,0.00006851675,0.00000397571],"category_scores_gemma":[0.00031041753,0.00005753964,0.000074388954,0.00035564532,0.0007172325,0.00023725104,0.000025533533,0.00044786758,1.2340568e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013667308,0.0008685049,0.35892594,0.00044847664,0.00017466553,0.00011682059,0.0027200363,0.00006524248,0.6276601,0.0003234954,0.00005207643,0.007277925],"study_design_scores_gemma":[0.0013648545,0.0017617592,0.99181306,0.00094640127,0.00013778162,0.000018063642,0.00033515017,0.00042790224,0.0009808003,0.00032368963,0.0017947911,0.00009572787],"about_ca_topic_score_codex":0.00005409965,"about_ca_topic_score_gemma":0.00030430872,"teacher_disagreement_score":0.6328871,"about_ca_system_score_codex":0.0000071102318,"about_ca_system_score_gemma":0.00024219422,"threshold_uncertainty_score":0.26426733},"labels":[],"label_agreement":null},{"id":"W4394095693","doi":"10.6084/m9.figshare.24130109","title":"Additional file 1 of Genomic classification and antimicrobial resistance profiling of Streptococcus pneumoniae and Haemophilus influenzae isolates associated with paediatric otitis media and upper respiratory infection","year":2023,"lang":"en","type":"dataset","venue":"Open MIND","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; McMaster University; University of Waterloo","funders":"","keywords":"Streptococcus pneumoniae; Haemophilus influenzae; Microbiology; Otitis; Medicine; Antimicrobial; Acute otitis media; Antibiotic resistance; Biology; Antibiotics","score_opus":0.030652416021733308,"score_gpt":0.2779313154934449,"score_spread":0.2472788994717116,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394095693","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.19335933,0.000071416056,1.4256487e-7,0.00003806034,0.00005449769,0.0007324783,0.8056907,0.0000048739257,0.00004852719],"genre_scores_gemma":[0.0018817063,0.0002394115,0.00011484459,0.000045947912,0.00012498525,0.00020488304,0.9972384,0.00003369797,0.00011614728],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99843115,0.0001349528,0.0005488515,0.0005024166,0.00018851798,0.00019413534],"domain_scores_gemma":[0.9975,0.0011210899,0.00073640153,0.00027479706,0.00024602344,0.00012168098],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00025635626,0.0002695462,0.0005968556,0.00042689987,0.00016328898,0.000059384718,0.00009211476,0.0003868024,0.007341448],"category_scores_gemma":[0.0010804402,0.00024279243,0.000048399033,0.0003676607,0.00036364098,0.00017013749,0.00015594742,0.0003843082,0.00003832067],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009103673,0.00010841073,0.008153975,0.0003084761,0.00019021824,0.000016406031,0.00004330967,0.0000014895678,0.006018537,3.985467e-7,0.98451966,0.0005480999],"study_design_scores_gemma":[0.0010522045,0.0003553978,0.49062052,0.0016481371,0.00039772026,0.000024338338,0.000038580256,0.000011759419,0.00022796393,0.0000062037443,0.50533944,0.0002777068],"about_ca_topic_score_codex":0.00006004503,"about_ca_topic_score_gemma":0.0012142216,"teacher_disagreement_score":0.48246655,"about_ca_system_score_codex":0.00007226171,"about_ca_system_score_gemma":0.0004946388,"threshold_uncertainty_score":0.993566},"labels":[],"label_agreement":null},{"id":"W4394498740","doi":"10.6084/m9.figshare.5240527","title":"Supplementary Material for: Risk Factors for Community-Acquired Pneumonia in Adults: A Systematic Review of Observational Studies","year":2017,"lang":"en","type":"review","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Observational study; Pneumonia; Community-acquired pneumonia; Medicine; Intensive care medicine; Internal medicine","score_opus":0.37373893303048367,"score_gpt":0.4543643644039896,"score_spread":0.08062543137350592,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394498740","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000007864919,0.50825495,6.86489e-8,0.000021153937,0.00010906061,0.00597505,0.48561484,0.00001179697,0.000005220451],"genre_scores_gemma":[0.000004904947,0.6133386,0.000014592573,0.00008600519,0.00009245224,0.008875099,0.37752175,0.00003697308,0.000029626879],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.9973744,0.00043001128,0.001506615,0.00023480333,0.0002092089,0.00024494776],"domain_scores_gemma":[0.9950982,0.0017583376,0.0018064454,0.0008211239,0.0004470096,0.00006890332],"candidate_categories":["metaresearch","metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00043986342,0.00042118336,0.004017559,0.00018459298,0.00031541914,0.000019502611,0.00036971364,0.00021606182,0.003996726],"category_scores_gemma":[0.010942291,0.0002907596,0.0009227416,0.0001205591,0.000023479864,0.00007463285,0.00013819996,0.00024968348,0.000012566526],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009148172,0.00008782452,0.000021333799,0.97626996,0.0006087595,0.0000019844356,0.00009840374,3.31133e-8,3.3645088e-7,0.0000014735505,0.021873038,0.0010277091],"study_design_scores_gemma":[0.00030115433,0.00017641438,0.000030237665,0.5758524,0.0018610113,0.000008649344,0.00006504365,7.3006305e-7,8.842709e-7,0.0000035214914,0.42156467,0.00013529853],"about_ca_topic_score_codex":0.000024136767,"about_ca_topic_score_gemma":0.000086589214,"teacher_disagreement_score":0.40041757,"about_ca_system_score_codex":0.00022131304,"about_ca_system_score_gemma":0.00036437207,"threshold_uncertainty_score":0.99995446},"labels":[],"label_agreement":null},{"id":"W4394538166","doi":"10.6084/m9.figshare.24130109.v1","title":"Additional file 1 of Genomic classification and antimicrobial resistance profiling of Streptococcus pneumoniae and Haemophilus influenza isolates associated with paediatric otitis media and upper respiratory infection","year":2023,"lang":"en","type":"dataset","venue":"Open MIND","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; McMaster University; University of Waterloo","funders":"","keywords":"Streptococcus pneumoniae; Haemophilus influenzae; Microbiology; Haemophilus; Otitis; Acute otitis media; Antibiotic resistance; Antimicrobial; Medicine; Biology; Virology; Bacteria; Antibiotics; Genetics","score_opus":0.03596877758077996,"score_gpt":0.28641405375987805,"score_spread":0.25044527617909806,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394538166","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.194432,0.00007446817,1.4186921e-7,0.00003248091,0.00005377164,0.00071881065,0.80463696,0.0000047798358,0.00004659236],"genre_scores_gemma":[0.0016242643,0.00021087064,0.00011329354,0.00005630819,0.00012564227,0.0002049766,0.9975302,0.000033822937,0.00010062543],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984417,0.00013286756,0.0005496827,0.00049700635,0.00018709406,0.00019164839],"domain_scores_gemma":[0.99754536,0.0010813768,0.0007400004,0.00027155163,0.00024169355,0.00012003487],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00025269928,0.00026632185,0.00058989966,0.00042128892,0.0001608361,0.00005876544,0.00009087254,0.0003831153,0.007244164],"category_scores_gemma":[0.0010289446,0.00023983566,0.00004771891,0.00036273885,0.0003589965,0.00016835176,0.00015368525,0.00037962053,0.000037784517],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009636228,0.00010822415,0.008594821,0.00030597282,0.00018983691,0.00001568217,0.00004902038,0.0000013381139,0.005145962,4.0636846e-7,0.98496026,0.0005321033],"study_design_scores_gemma":[0.0010801861,0.00035204444,0.4480475,0.0016310991,0.0003959621,0.000023049495,0.00004344371,0.000011188003,0.00021020352,0.0000064065957,0.5479241,0.0002748188],"about_ca_topic_score_codex":0.00005663738,"about_ca_topic_score_gemma":0.0010971487,"teacher_disagreement_score":0.43945268,"about_ca_system_score_codex":0.0000713164,"about_ca_system_score_gemma":0.0004870988,"threshold_uncertainty_score":0.9936634},"labels":[],"label_agreement":null},{"id":"W4394577897","doi":"10.1038/s42003-024-06113-9","title":"Klebsiella pneumoniae peptide hijacks a Streptococcus pneumoniae permease to subvert pneumococcal growth and colonization","year":2024,"lang":"en","type":"article","venue":"Communications Biology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centre Hospitalier Universitaire Vaudois; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; York University; University of Bern","keywords":"Streptococcus pneumoniae; Microbiology; Biology; Pneumolysin; Klebsiella pneumoniae; Streptococcus mitis; Pneumococcal infections; Antibiotics; Streptococcus; Bacteria; Gene; Escherichia coli","score_opus":0.02506853398474709,"score_gpt":0.33128622041865063,"score_spread":0.30621768643390357,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394577897","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9466035,0.001706168,0.0006373888,0.03975456,0.00040281354,0.0013061156,0.00010885182,0.0005860344,0.008894609],"genre_scores_gemma":[0.995855,0.0011901933,0.00023076375,0.0013774058,0.0001310006,0.00039373006,0.00019562378,0.00004564387,0.00058065413],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99834937,0.00024589547,0.00042918883,0.00050056865,0.00010032409,0.0003746448],"domain_scores_gemma":[0.99772924,0.00037764243,0.000057688983,0.0012918899,0.00018957436,0.00035394932],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021945279,0.00026359313,0.00036078796,0.00045918606,0.0004405527,0.00008463718,0.00038548268,0.00025512173,0.00006341335],"category_scores_gemma":[0.0003180485,0.00023373547,0.00012331468,0.0007733041,0.0004401069,0.00010825057,0.00043153428,0.0005368384,0.0002899232],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020770252,0.00031729994,0.18131992,0.00015764499,0.0001745248,0.000034576184,0.00081762706,0.0000072670073,0.79169554,0.018165749,0.00101931,0.0062698056],"study_design_scores_gemma":[0.0014716982,0.002259716,0.31747955,0.00062865583,0.0006489107,0.001020491,0.00065867085,0.0062456173,0.005624134,0.0027470165,0.6600697,0.0011458541],"about_ca_topic_score_codex":0.000045283858,"about_ca_topic_score_gemma":0.00015529316,"teacher_disagreement_score":0.78607136,"about_ca_system_score_codex":0.000121953955,"about_ca_system_score_gemma":0.00027245592,"threshold_uncertainty_score":0.95314556},"labels":[],"label_agreement":null},{"id":"W4394914465","doi":"10.1007/s00431-024-05519-1","title":"Challenges in the treatment of pediatric Mycoplasma pneumoniae pneumonia","year":2024,"lang":"en","type":"article","venue":"European Journal of Pediatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":98,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Natural Science Foundation of China","keywords":"Medicine; Pneumonia; Mycoplasma pneumoniae; Azithromycin; Antibiotics; Doxycycline; Mycoplasma pneumonia; Immunology; Community-acquired pneumonia; Minocycline; Internal medicine; Microbiology","score_opus":0.06636517081431892,"score_gpt":0.2995270406038618,"score_spread":0.2331618697895429,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394914465","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9547478,0.0327726,0.00002654744,0.003461626,0.001051489,0.00016479984,0.0000073289084,0.000024806788,0.007743007],"genre_scores_gemma":[0.90953475,0.08734585,0.000043154272,0.00006006051,0.0028825777,0.0000015853552,8.4854173e-7,0.00003226567,0.000098887605],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981713,0.0003764468,0.000696714,0.00015724279,0.00039334892,0.00020492812],"domain_scores_gemma":[0.998974,0.0003184121,0.0002300152,0.0002377974,0.0001229469,0.00011681764],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010023318,0.00017344452,0.0003299956,0.0007027533,0.000044708948,0.00003058934,0.00017325481,0.000040135066,0.000014353067],"category_scores_gemma":[0.000095459734,0.00009955864,0.00029832224,0.0006874922,0.00003744592,0.00009269192,0.000013812195,0.0003441418,0.000067202585],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032620545,0.008539055,0.5319383,0.003149111,0.000531714,0.051528193,0.04417083,0.0006338886,0.0170634,0.0012962243,0.007696835,0.33312622],"study_design_scores_gemma":[0.0038960313,0.01761683,0.52426964,0.00021907418,0.0026458593,0.013147655,0.0021352014,0.000079235746,0.00015545219,0.00011486274,0.43525824,0.0004619019],"about_ca_topic_score_codex":9.3379197e-7,"about_ca_topic_score_gemma":0.0000031027703,"teacher_disagreement_score":0.4275614,"about_ca_system_score_codex":0.00008273197,"about_ca_system_score_gemma":0.00020496127,"threshold_uncertainty_score":0.40598834},"labels":[],"label_agreement":null},{"id":"W4394959696","doi":"10.1097/id9.0000000000000118","title":"Prevention and Treatment of Mycoplasma pneumoniae Requires Long-term Attention","year":2024,"lang":"en","type":"article","venue":"Infectious Diseases & Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Mycoplasma pneumoniae; Term (time); Intensive care medicine; Medicine; Microbiology; Biology; Internal medicine; Pneumonia; Physics","score_opus":0.017904045806681347,"score_gpt":0.31098141391252065,"score_spread":0.2930773681058393,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394959696","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99491036,0.0029682808,0.00008566239,0.00012468557,0.00033494906,0.00046838404,0.000042178144,0.00030282658,0.000762681],"genre_scores_gemma":[0.9976374,0.0014354388,0.0000021308517,0.000023329329,0.00011682609,0.000081689606,0.00007481526,0.000023787205,0.00060456974],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99907565,0.00011634124,0.00027726238,0.00021821141,0.0001398948,0.00017265229],"domain_scores_gemma":[0.9993209,0.000092134804,0.000066706794,0.00029939832,0.00007747905,0.00014335815],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000624279,0.00018174027,0.00027494173,0.00024190407,0.00018877385,0.000050216542,0.000030485131,0.00008677431,0.000090545414],"category_scores_gemma":[0.000040896997,0.0001486481,0.00025372166,0.00025485922,0.00014674664,0.0001833193,0.00002937363,0.00010853939,0.000035717778],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004622273,0.0014136474,0.9111906,0.0004452867,0.00041473855,0.00007373891,0.00017966933,0.000008156738,0.031220397,0.000112028414,0.000026090243,0.054869387],"study_design_scores_gemma":[0.0010824705,0.0023701764,0.99228495,0.00047838694,0.0009526624,0.00065935345,0.00004198782,0.000113012014,0.0005645679,0.00027142724,0.0010286153,0.00015239076],"about_ca_topic_score_codex":0.000106413114,"about_ca_topic_score_gemma":0.00006674698,"teacher_disagreement_score":0.08109431,"about_ca_system_score_codex":0.0001721934,"about_ca_system_score_gemma":0.00015333376,"threshold_uncertainty_score":0.6061694},"labels":[],"label_agreement":null},{"id":"W4394963944","doi":"10.1101/2024.04.16.24305938","title":"The effect of anti-platelet agents on end organ dysfunction and mortality in community acquired pneumonia: A protocol for a systematic review and meta-analysis","year":2024,"lang":"en","type":"review","venue":"medRxiv","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University Health Centre; CancerCare Manitoba; Université Laval; University of British Columbia; University Health Network; University of Toronto; George & Fay Yee Centre for Healthcare Innovation; University of Manitoba","funders":"","keywords":"Medicine; Observational study; Meta-analysis; Community-acquired pneumonia; Randomized controlled trial; Pneumonia; Publication bias; Intensive care medicine; Odds ratio; MEDLINE; Clinical trial; Internal medicine; Hazard ratio; Confidence interval","score_opus":0.11261249100006646,"score_gpt":0.4251636506898312,"score_spread":0.31255115968976477,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394963944","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0016715266,0.7592119,0.000002422827,0.00010133366,0.000032551856,0.23883888,0.00008159658,0.000032185075,0.000027572687],"genre_scores_gemma":[0.0017812283,0.609414,0.0000010331104,0.000095205265,0.00001597009,0.38849783,0.000030939984,0.000046510064,0.000117291056],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9956192,0.0023061316,0.0012599333,0.00034711056,0.0002687664,0.00019890565],"domain_scores_gemma":[0.99718726,0.001103353,0.00062230846,0.0009243416,0.00006718926,0.00009554696],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004154122,0.0004799062,0.006813935,0.00035007746,0.00020912118,0.00004155906,0.00014909606,0.00020704098,0.000016725666],"category_scores_gemma":[0.0006797642,0.00020692857,0.0014896954,0.0010407686,0.00013425162,0.000034293764,0.000079755104,0.0004960905,0.000005557674],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000007838026,0.000066142224,0.00054382463,0.94475245,0.054095585,0.000013265668,0.000026353064,1.1815677e-7,0.0000060934685,0.000004557278,0.000021225806,0.0004625602],"study_design_scores_gemma":[0.00044728673,0.0008003929,0.00064466917,0.08866169,0.8917131,0.00008560896,0.0000065753497,0.000009746372,0.00000902007,0.000005819463,0.017429274,0.00018681087],"about_ca_topic_score_codex":0.000027879523,"about_ca_topic_score_gemma":0.00008717449,"teacher_disagreement_score":0.8560907,"about_ca_system_score_codex":0.00006669222,"about_ca_system_score_gemma":0.00006729621,"threshold_uncertainty_score":0.8438302},"labels":[],"label_agreement":null},{"id":"W4395037761","doi":"10.1128/spectrum.04245-23","title":"International circumpolar surveillance: update on the interlaboratory quality control program for <i>Streptococcus pneumoniae</i> , 2009 to 2020","year":2024,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta; Ste. Anne's Hospital; Public Health Agency of Canada","funders":"Centers for Disease Control and Prevention; Public Health Agency; Public Health Agency of Canada; GlaxoSmithKline","keywords":"Circumpolar star; Streptococcus pneumoniae; Environmental health; Geography; Medicine; Biology; Microbiology","score_opus":0.011011624523018917,"score_gpt":0.31282093032163294,"score_spread":0.30180930579861404,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4395037761","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.73319626,0.00051740115,0.00096612197,0.25020403,0.0054999096,0.004201779,0.0026465484,0.00074884656,0.0020191264],"genre_scores_gemma":[0.9846732,0.000036065525,0.000024339142,0.013338339,0.00079185213,0.00058473065,0.00015654656,0.000034118028,0.0003608091],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99848115,0.00016290425,0.0003791925,0.00050250295,0.00007022888,0.00040403675],"domain_scores_gemma":[0.9990478,0.00029736216,0.00006551132,0.0003705938,0.00010154455,0.00011717042],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005600826,0.00023123687,0.0003352482,0.00013035633,0.00014698606,0.000072709314,0.00022324947,0.00016705452,0.00028352565],"category_scores_gemma":[0.00016468782,0.0001518314,0.00022201288,0.00028729544,0.00015578704,0.00003818757,0.000042694097,0.0004257955,0.0005403919],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016343185,0.00025273536,0.01634785,0.000051175095,0.0004656886,0.00004166349,0.000097515935,0.000006316811,0.90589017,0.0021506825,0.07126393,0.00326885],"study_design_scores_gemma":[0.0007631841,0.0008760473,0.0098339245,0.00006563417,0.000041864892,0.00009637032,0.000047522073,0.000046597852,0.0092219645,0.00012837273,0.9786825,0.0001959826],"about_ca_topic_score_codex":0.0000069037765,"about_ca_topic_score_gemma":0.000057364337,"teacher_disagreement_score":0.9074186,"about_ca_system_score_codex":0.00015466851,"about_ca_system_score_gemma":0.00015635873,"threshold_uncertainty_score":0.69458246},"labels":[],"label_agreement":null},{"id":"W4396221157","doi":"10.1080/14760584.2024.2345670","title":"Cost-effectiveness analysis of 20-valent pneumococcal conjugate vaccine for routine pediatric vaccination programs in Japan","year":2024,"lang":"en","type":"article","venue":"Expert Review of Vaccines","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer Japan","keywords":"Pneumococcal conjugate vaccine; Medicine; Vaccination; Immunization program; Immunization; Pediatrics; Pneumococcal vaccination; Pneumococcal disease; Conjugate vaccine; Pneumococcal infections; Routine immunization; Streptococcus pneumoniae; Immunology; Antibody; Microbiology; Biology; Antibiotics","score_opus":0.056914771521500915,"score_gpt":0.3958288752334885,"score_spread":0.33891410371198755,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4396221157","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8106079,0.17871149,0.00087288895,0.0025529168,0.0006327989,0.00626604,0.00005482488,0.00013324631,0.0001678963],"genre_scores_gemma":[0.94156903,0.056215473,0.00010408852,0.00020037778,0.00030269267,0.0012894379,0.00021847217,0.000036248308,0.000064196814],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978991,0.00015146582,0.0010408576,0.00041324305,0.00023584614,0.00025950096],"domain_scores_gemma":[0.9985302,0.0003273889,0.00024074744,0.00036836762,0.00042994664,0.00010332013],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00091736374,0.0002651406,0.001343336,0.0009206899,0.000037532256,0.000012313484,0.00011520661,0.00010759297,0.00013522797],"category_scores_gemma":[0.0003265385,0.00019143234,0.0007066725,0.0029213973,0.0000097721095,0.00012715394,0.00003843862,0.00015298523,0.000005083452],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000287061,0.0018393754,0.7680117,0.07382164,0.002158205,0.000022253695,0.00052056054,0.00010452298,0.039994467,0.00044551183,0.0010623963,0.111732304],"study_design_scores_gemma":[0.0027076541,0.0013977767,0.93846345,0.010572547,0.005615037,0.000038232716,0.000086376,0.0028388626,0.0042217146,0.00002853657,0.033641,0.00038880197],"about_ca_topic_score_codex":0.000040761846,"about_ca_topic_score_gemma":0.000053473264,"teacher_disagreement_score":0.17045176,"about_ca_system_score_codex":0.000110943285,"about_ca_system_score_gemma":0.00012823571,"threshold_uncertainty_score":0.7806384},"labels":[],"label_agreement":null},{"id":"W4396798308","doi":"10.1101/2024.05.09.593393","title":"DivIVA controls the dynamics of septum splitting and cell elongation in <i>Streptococcus pneumoniae</i>","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Nautical Research Society","funders":"","keywords":"Elongation; Streptococcus pneumoniae; Dynamics (music); Cell biology; Physics; Microbiology; Biology; Materials science; Composite material; Acoustics","score_opus":0.00813659983018008,"score_gpt":0.22415411504766794,"score_spread":0.21601751521748785,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4396798308","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941836,0.001301646,0.000121019664,0.0016727753,0.0007590868,0.0014886967,0.00018832751,0.00018562337,0.000099212746],"genre_scores_gemma":[0.99890834,0.00017877208,0.000079579906,0.00024131185,0.00021023312,0.0002664155,6.4414996e-7,0.000096224314,0.000018478702],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9976153,0.00014932202,0.00076789956,0.000718136,0.00033706788,0.0004123046],"domain_scores_gemma":[0.9980772,0.00017778818,0.00040226578,0.0008884987,0.0002788527,0.00017538226],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00073055224,0.00045083338,0.000710369,0.00034654685,0.000123422,0.0001140954,0.00021346337,0.00049326237,0.000010278924],"category_scores_gemma":[0.00018348613,0.00036027897,0.00019911326,0.0005672691,0.00023028086,0.0000613149,0.0004696814,0.001516677,0.000018723706],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011860755,0.00016791931,0.19741851,0.0016080032,0.00012947904,0.00007773889,0.000038083064,0.00007946139,0.799528,0.00089748675,0.000033758457,0.00000969253],"study_design_scores_gemma":[0.0021218676,0.00026960674,0.8361915,0.0034061335,0.000990805,2.3960078e-7,0.000058850066,0.012292516,0.1414442,0.000047202968,0.0021841398,0.0009929662],"about_ca_topic_score_codex":0.000055808065,"about_ca_topic_score_gemma":0.000021862375,"teacher_disagreement_score":0.6580838,"about_ca_system_score_codex":0.00029342662,"about_ca_system_score_gemma":0.0005815705,"threshold_uncertainty_score":0.9998849},"labels":[],"label_agreement":null},{"id":"W4396831136","doi":"10.1007/s40121-024-00977-4","title":"Cost-effectiveness of PCV20 to Prevent Pneumococcal Disease in the Pediatric Population: A German Societal Perspective Analysis","year":2024,"lang":"en","type":"article","venue":"Infectious Diseases and Therapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer","keywords":"Medicine; Pneumococcal conjugate vaccine; Otitis; Pediatrics; Pneumonia; Cost effectiveness; Population; Cost-effectiveness analysis; Vaccination; Pneumococcal pneumonia; Environmental health; Streptococcus pneumoniae; Internal medicine; Surgery; Immunology","score_opus":0.020940596046716813,"score_gpt":0.35836831559321985,"score_spread":0.337427719546503,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4396831136","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937202,0.00397594,0.00014998802,0.0005189073,0.00013130867,0.0012401649,0.00006721933,0.00007418616,0.00012212276],"genre_scores_gemma":[0.99840516,0.00075285765,9.174727e-7,0.00024326472,0.00020330722,0.00034814954,0.000018411867,0.000015237744,0.000012720396],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99889207,0.00023434956,0.0001943276,0.00030679943,0.00020479228,0.00016766675],"domain_scores_gemma":[0.99925834,0.00023606978,0.000034994613,0.0002069377,0.000075052936,0.00018857865],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020195273,0.0001598054,0.00029235816,0.00041330935,0.00011106816,0.000053744356,0.000050538096,0.000046450514,0.00003691474],"category_scores_gemma":[0.000036004985,0.000104901024,0.00036766988,0.0014306601,0.000050948118,0.00008314626,0.000018175317,0.00014343375,0.000004844623],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014407514,0.0009717614,0.9933838,0.0001833274,0.00055539113,0.00006262923,0.0008317247,0.0004221446,0.00038832545,0.0014984201,0.0000111374275,0.0015472133],"study_design_scores_gemma":[0.000525026,0.0003555663,0.99535793,0.000047398233,0.0010557086,0.000016620166,0.000110174355,0.000300828,0.000008484863,0.001797534,0.00030417053,0.00012053549],"about_ca_topic_score_codex":0.00020843747,"about_ca_topic_score_gemma":0.00001997574,"teacher_disagreement_score":0.0046849702,"about_ca_system_score_codex":0.000111648194,"about_ca_system_score_gemma":0.000111058966,"threshold_uncertainty_score":0.42777395},"labels":[],"label_agreement":null},{"id":"W4396914340","doi":"10.1093/ofid/ofae275","title":"Invasive Pneumococcal Disease Epidemiology and Serotype Replacement After the Introduction of the 13-Valent Pneumococcal Conjugate Vaccine in Ontario, Canada, 2007–2022","year":2024,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; Nova Scotia Health Authority; Public Health Ontario; University of Toronto","funders":"Public Health Ontario","keywords":"Pneumococcal disease; Medicine; Serotype; Pneumococcal conjugate vaccine; Epidemiology; Conjugate vaccine; Virology; Pneumococcal infections; Conjugate; Streptococcus pneumoniae; Microbiology; Pathogenic organism; Immunology; Antibiotics; Internal medicine; Antibody; Immunogenicity; Biology","score_opus":0.01073473688516011,"score_gpt":0.26302621515069147,"score_spread":0.25229147826553133,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4396914340","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96470517,0.0012465996,0.0000043184073,0.029751932,0.0014678664,0.0019385272,0.00010091558,0.00003544091,0.0007492561],"genre_scores_gemma":[0.9946051,0.00015572412,7.6447003e-7,0.0029214858,0.00020553218,0.0006340869,0.000042374,0.000028076436,0.0014068404],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99788123,0.0003642036,0.00058164884,0.0005441959,0.00020949217,0.00041922415],"domain_scores_gemma":[0.9985087,0.000340465,0.0001399559,0.0006167785,0.00009535973,0.00029872122],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004070799,0.0002666984,0.0004687846,0.00011359999,0.0002695839,0.0000531853,0.00019312976,0.00007480299,0.00090840616],"category_scores_gemma":[0.0006071622,0.00015672966,0.00015814854,0.00032413763,0.00018233788,0.00017602065,0.00041711854,0.0004994545,0.000011810219],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00057358353,0.00023737823,0.9825991,0.00015452031,0.00016837,0.00007132807,0.00008499482,0.00018907872,0.00064327166,0.0004683269,0.014547798,0.00026227732],"study_design_scores_gemma":[0.0008417415,0.00032841068,0.941874,0.00019333705,0.0003564374,0.00013149405,0.00010637494,0.000082221406,0.00007456644,0.0008426412,0.05500298,0.00016578569],"about_ca_topic_score_codex":0.39681646,"about_ca_topic_score_gemma":0.93651104,"teacher_disagreement_score":0.53969455,"about_ca_system_score_codex":0.0006808532,"about_ca_system_score_gemma":0.0023186894,"threshold_uncertainty_score":0.994641},"labels":[],"label_agreement":null},{"id":"W4398764239","doi":"10.14745/ccdr.v50i05a02f","title":"Surveillance des pneumococcies invasives au Canada, 2021–2022","year":2024,"lang":"fr","type":"article","venue":"Relevé des maladies transmissibles au Canada","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Geography; Environmental science; Political science","score_opus":0.012735704624430728,"score_gpt":0.23159224456854482,"score_spread":0.2188565399441141,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4398764239","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.58114,0.34742904,0.00025216918,0.015805833,0.014071674,0.00078291027,0.0016778404,0.00018693833,0.038653616],"genre_scores_gemma":[0.8906982,0.060716566,0.000051468636,0.00066856004,0.0025055879,0.00008846781,0.00006459864,0.00015729721,0.045049265],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9947004,0.0003324752,0.0009091081,0.000937268,0.0009330437,0.0021877587],"domain_scores_gemma":[0.99655676,0.0010937179,0.00011204134,0.0006262617,0.0003128699,0.0012983793],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00042303544,0.00086216885,0.0009892837,0.00028997572,0.0014296051,0.00017421042,0.00040001931,0.00031040172,0.0027157436],"category_scores_gemma":[0.0003274558,0.00081529224,0.00033205622,0.0015003377,0.0014780117,0.0003376561,0.00006252415,0.0009931546,0.000036607562],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":true,"study_design_scores_codex":[0.00015975742,0.00032647984,0.5202341,0.09624402,0.0045490544,0.017756162,0.005376711,0.0037247124,0.030313408,0.008538807,0.10689599,0.20588078],"study_design_scores_gemma":[0.0004094165,0.00023939721,0.27932313,0.011952499,0.0003819303,0.0007789218,0.0015417152,0.00040593243,0.0018816823,0.00017029852,0.70212513,0.0007899757],"about_ca_topic_score_codex":0.9976457,"about_ca_topic_score_gemma":0.99998266,"teacher_disagreement_score":0.59522915,"about_ca_system_score_codex":0.0094723,"about_ca_system_score_gemma":0.069928735,"threshold_uncertainty_score":0.9998704},"labels":[],"label_agreement":null},{"id":"W4398774847","doi":"10.1371/journal.pone.0302400","title":"Serotype epidemiology and antibiotic resistance of pneumococcal isolates colonizing infants in Botswana (2016–2019)","year":2024,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"Center for AIDS Research, University of Washington; University of Pennsylvania; Sanofi; Merck; National Institutes of Health; National Institute of Allergy and Infectious Diseases; Pfizer","keywords":"Serotype; Streptococcus pneumoniae; Pneumococcal conjugate vaccine; Penicillin; Microbiology; Meningitis; Antibiotic resistance; Carriage; Pneumococcal infections; Virology; Epidemiology; Medicine; Sulfamethoxazole; Multilocus sequence typing; Amoxicillin; Antibiotics; Biology; Drug resistance; Pediatrics; Internal medicine; Genotype","score_opus":0.05566523703011387,"score_gpt":0.2981063287312216,"score_spread":0.24244109170110775,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4398774847","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99061316,0.0050601517,0.000010273211,0.0030561348,0.00007079523,0.0002606495,0.000010472332,0.000059237656,0.0008590998],"genre_scores_gemma":[0.9977793,0.0008900474,0.00025781896,0.00023821673,0.000060227503,0.000005659378,0.0000036061303,0.00001603768,0.00074908294],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990444,0.000089867346,0.00033781322,0.00023307739,0.00007067942,0.00022413142],"domain_scores_gemma":[0.99926215,0.00038719104,0.000051398074,0.00016885252,0.000045847857,0.00008454697],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035926708,0.00010156016,0.0004678179,0.00019653162,0.000037374022,0.0000058582236,0.00003866729,0.00012665299,0.00002326082],"category_scores_gemma":[0.00054861803,0.00008510173,0.000036968424,0.00027205318,0.00013228018,0.00006275683,0.0000317573,0.0002641059,0.00003389733],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005471654,0.00030439516,0.3845212,0.000906304,0.00014733145,0.00004256749,0.00013749136,0.000001404865,0.6132274,0.00036823814,0.00012376076,0.00016520398],"study_design_scores_gemma":[0.00078976474,0.0005912109,0.9573734,0.0060232137,0.00031485324,0.000040269868,0.000045833694,0.001243254,0.030659528,0.0007641173,0.0019440966,0.00021049687],"about_ca_topic_score_codex":0.000033152934,"about_ca_topic_score_gemma":0.000063852654,"teacher_disagreement_score":0.5825679,"about_ca_system_score_codex":0.000036434056,"about_ca_system_score_gemma":0.000097058524,"threshold_uncertainty_score":0.3470348},"labels":[],"label_agreement":null},{"id":"W4398784133","doi":"10.14745/ccdr.v50i05a02","title":"Invasive pneumococcal disease surveillance in Canada, 2021–2022","year":2024,"lang":"en","type":"article","venue":"Canada Communicable Disease Report","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Yukon Health and Social Services; Queen Elizabeth II Health Sciences Centre; Government of New Brunswick; BC Centre for Disease Control; Public Health Ontario; Provincial Laboratory of Public Health; University of Toronto; Ste. Anne's Hospital; Saskatchewan Disease Control Laboratory; University of Manitoba; Mount Sinai Hospital; Public Health Agency of Canada","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Pneumococcal disease; Medicine; Intensive care medicine; Disease surveillance; Disease; Streptococcus pneumoniae; Biology; Internal medicine; Microbiology","score_opus":0.010301575453743281,"score_gpt":0.2440211606997069,"score_spread":0.23371958524596362,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4398784133","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9700417,0.008548703,0.0000032235623,0.014204548,0.0010577539,0.00055499317,0.0003433147,0.00006720279,0.0051785745],"genre_scores_gemma":[0.99546343,0.00048175248,0.000002539182,0.0014106461,0.00010511434,0.00014078016,0.00032219148,0.00004160545,0.0020319573],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9977928,0.00015417216,0.0005540397,0.00042874608,0.00059502304,0.00047521264],"domain_scores_gemma":[0.99664694,0.00028847187,0.000076267876,0.0015105495,0.00014059074,0.0013371573],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023812725,0.00024399474,0.0004080202,0.0001224794,0.00018732747,0.00003973282,0.00023817326,0.000038777856,0.0004372598],"category_scores_gemma":[0.00072591234,0.00023098329,0.00012256051,0.0006053342,0.00007774567,0.00008805362,0.00016517552,0.00056507776,0.000007791108],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006371945,0.000099140234,0.83599955,0.00042188526,0.000118496275,0.13581818,0.000013787832,0.00036155013,0.0006456001,0.0000980011,0.025659028,0.0007010449],"study_design_scores_gemma":[0.00023408911,0.000010852623,0.7038831,0.0003365251,0.000073995936,0.00030841932,0.00010563829,0.0007322026,0.000019100442,0.00004132557,0.29401335,0.00024136071],"about_ca_topic_score_codex":0.99385613,"about_ca_topic_score_gemma":0.9998033,"teacher_disagreement_score":0.26835433,"about_ca_system_score_codex":0.003447797,"about_ca_system_score_gemma":0.09623791,"threshold_uncertainty_score":0.94192255},"labels":[],"label_agreement":null},{"id":"W4399274587","doi":"10.1002/jhm.13422","title":"Real‐world use of glucocorticoids and clinical outcomes in adults hospitalized with community‐acquired pneumonia on medical wards","year":2024,"lang":"en","type":"article","venue":"Journal of Hospital Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ottawa Hospital; St. Michael's Hospital; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Canadian Frailty Network; Canadian Cancer Society","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Intensive care unit; Intensive care medicine; Hospital medicine; Emergency medicine; Internal medicine","score_opus":0.0279741393695752,"score_gpt":0.3540283536066768,"score_spread":0.32605421423710157,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399274587","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9826468,0.00023942288,0.000020559493,0.015026367,0.0012755353,0.00034362986,0.000006282461,0.000036472356,0.00040488146],"genre_scores_gemma":[0.99677795,0.001765454,0.000094555195,0.00072790874,0.000404341,0.0000058109817,0.0000043769305,0.000038173857,0.00018140739],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99648553,0.0002971621,0.0016603064,0.00020460643,0.0010862574,0.00026616408],"domain_scores_gemma":[0.997106,0.001283465,0.0004070628,0.00035582308,0.00030806623,0.00053955574],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014655574,0.0002736641,0.0013177976,0.0007625032,0.00006118123,0.00001778149,0.00016321903,0.00019328522,0.000059443446],"category_scores_gemma":[0.00201946,0.00014970284,0.0002301482,0.0006013963,0.0008316716,0.00022145826,0.000058690013,0.0013394163,0.000003311195],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008820263,0.0015823161,0.9858313,0.00037567626,0.0005670561,0.0026154532,0.0012272407,0.0000021705996,0.00044940074,0.00020352399,0.0004532834,0.0058105406],"study_design_scores_gemma":[0.006763521,0.02780216,0.9521526,0.010340483,0.0004117805,0.0004046526,0.00040963606,0.00013499236,0.000040531268,0.000076885706,0.0013089004,0.000153849],"about_ca_topic_score_codex":0.00040548432,"about_ca_topic_score_gemma":0.00019008911,"teacher_disagreement_score":0.033678703,"about_ca_system_score_codex":0.00010757769,"about_ca_system_score_gemma":0.00037647557,"threshold_uncertainty_score":0.6104705},"labels":[],"label_agreement":null},{"id":"W4399354351","doi":"10.1007/s10140-024-02248-8","title":"Imaging of pulmonary infections encountered in the emergency department in post-COVID 19 era– common, rare and exotic. Bacterial and viral","year":2024,"lang":"en","type":"review","venue":"Emergency Radiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"The Scarborough Hospital","funders":"","keywords":"Medicine; Emergency department; Radiological weapon; Intensive care medicine; Medical diagnosis; Psychological intervention; Coronavirus disease 2019 (COVID-19); Radiological imaging; Disease; Infectious disease (medical specialty); Pediatrics; Pathology; Radiology","score_opus":0.036807761357643784,"score_gpt":0.34694171188122985,"score_spread":0.31013395052358605,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399354351","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.061374713,0.933554,0.0000038033215,0.00064538413,0.0024212694,0.0012169395,0.00016408606,0.000032058986,0.0005877694],"genre_scores_gemma":[0.04648664,0.952349,0.0000034834104,0.0001083088,0.00034375378,0.00033950512,0.00027013855,0.000035928206,0.00006322814],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9971907,0.0006774775,0.0011800503,0.0004983827,0.000110368084,0.0003429951],"domain_scores_gemma":[0.9991564,0.00010812147,0.00021469215,0.00036054314,0.000030092298,0.00013012771],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000459047,0.00040786705,0.0013260987,0.0006751753,0.00010761126,0.0000073281976,0.00014159661,0.00027573633,0.00037321125],"category_scores_gemma":[0.00016381426,0.00027146543,0.00027172206,0.00052056834,0.00016768345,0.00007260374,0.00010272004,0.0007368668,0.00001165003],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002604996,0.0028371299,0.39782482,0.06516363,0.002177218,0.005744952,0.0059852367,0.000007566888,0.0019210718,0.0011385137,0.016098097,0.50084126],"study_design_scores_gemma":[0.0004841764,0.00041369282,0.024620587,0.0012997952,0.0013720451,0.009064399,0.00019309521,0.000026505333,3.4545025e-7,0.00034782835,0.9617978,0.00037977876],"about_ca_topic_score_codex":0.00022407113,"about_ca_topic_score_gemma":0.0008376759,"teacher_disagreement_score":0.94569963,"about_ca_system_score_codex":0.00012644619,"about_ca_system_score_gemma":0.00033471928,"threshold_uncertainty_score":0.9999738},"labels":[],"label_agreement":null},{"id":"W4399362593","doi":"10.1002/ppul.27110","title":"Necrotizing pneumonia associated with macrolide‐resistant <i>Mycoplasma</i> in a child","year":2024,"lang":"en","type":"article","venue":"Pediatric Pulmonology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Mycoplasma pneumoniae; Pneumonia; Mycoplasma pneumonia; Macrolide Antibiotics; Antibiotics; Virulence; Mycoplasma; Intensive care medicine; Azithromycin; Microbiology; Internal medicine; Erythromycin","score_opus":0.007649839428730985,"score_gpt":0.23824985010187405,"score_spread":0.23060001067314306,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399362593","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9841819,0.0018020133,0.000037640857,0.004595096,0.0005018743,0.00038352737,0.000021302569,0.00040795596,0.008068722],"genre_scores_gemma":[0.9978946,0.00042284353,0.000024594448,0.00061935675,0.0003814332,0.0000921872,0.00002086221,0.00005022075,0.0004939264],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983104,0.00008646551,0.00038107234,0.00047237592,0.00018061028,0.00056911045],"domain_scores_gemma":[0.9992753,0.00020074207,0.00007105802,0.00025132892,0.000049566668,0.00015197007],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022543363,0.0002395907,0.00042318972,0.0007229905,0.00012079922,0.00004148361,0.00007962049,0.00027023902,0.00006166944],"category_scores_gemma":[0.00016712779,0.00018822748,0.000107296364,0.0013914413,0.00007473254,0.000098044184,0.000046582114,0.00077040715,0.00018026876],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026005885,0.0006810327,0.96146727,0.00036681668,0.00027430154,0.016247401,0.0004620223,0.000104373365,0.016065342,0.00083981204,0.0012812688,0.001950325],"study_design_scores_gemma":[0.004263015,0.0024011205,0.903507,0.0005857284,0.0012467303,0.014379491,0.00017823979,0.0019782654,0.0003904764,0.00063684775,0.06935718,0.001075885],"about_ca_topic_score_codex":0.00006593638,"about_ca_topic_score_gemma":0.00030475724,"teacher_disagreement_score":0.06807591,"about_ca_system_score_codex":0.00021447985,"about_ca_system_score_gemma":0.00030805587,"threshold_uncertainty_score":0.76756936},"labels":[],"label_agreement":null},{"id":"W4399560898","doi":"10.2196/50678","title":"Estimating the Global and Regional Burden of Streptococcus pneumoniae Meningitis in Children: Protocol for a Systematic Review and Meta-Analysis","year":2024,"lang":"en","type":"review","venue":"JMIR Research Protocols","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Centre for Global Health Research","funders":"","keywords":"Streptococcus pneumoniae; Meningitis; Meta-analysis; Preprint; Medicine; Pandemic; Protocol (science); Antibiotic resistance; Serotype; Pneumococcal infections; Systematic review; Burden of disease; Coronavirus disease 2019 (COVID-19); Disease; Virology; Pediatrics; Antibiotics; MEDLINE; Microbiology; Internal medicine; Infectious disease (medical specialty); Biology; Computer science; Pathology; Alternative medicine","score_opus":0.35097208543014435,"score_gpt":0.6019545816210726,"score_spread":0.2509824961909283,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399560898","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[1.3149449e-7,0.27643618,0.0000054362686,0.0004582701,6.5463047e-7,0.72286606,0.00015892334,0.00002598783,0.00004834157],"genre_scores_gemma":[2.82923e-7,0.018881314,0.00008570418,0.000038216855,0.000069696616,0.98061496,0.000020475967,0.00004787368,0.00024145932],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.9945756,0.0014642662,0.0017521564,0.0008048784,0.0008842674,0.0005187949],"domain_scores_gemma":[0.99720645,0.0006195462,0.000646528,0.00093509123,0.00038563198,0.00020673769],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.003758034,0.00053127535,0.0058588474,0.00062802463,0.00020902322,0.00016739478,0.00036989085,0.00028141885,0.00004204071],"category_scores_gemma":[0.00066372723,0.00025715624,0.0016945333,0.0025437162,0.00037695814,0.00007851241,0.00032412072,0.0010272681,0.000007965793],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000070079996,0.00010374873,0.000049095073,0.9700059,0.027795373,0.00001307989,0.000035573405,9.634858e-7,5.1912866e-7,0.0001335168,0.00039530543,0.0014598982],"study_design_scores_gemma":[0.0006507274,0.0008216584,0.000019670402,0.6736639,0.19142653,0.00037351673,0.000015492527,0.000091292495,1.8471967e-7,0.00017018714,0.13246848,0.00029833286],"about_ca_topic_score_codex":0.000028559565,"about_ca_topic_score_gemma":0.000012529015,"teacher_disagreement_score":0.296342,"about_ca_system_score_codex":0.00019755148,"about_ca_system_score_gemma":0.00072342204,"threshold_uncertainty_score":0.9999881},"labels":[],"label_agreement":null},{"id":"W4399694624","doi":"10.1093/ofid/ofae336","title":"Guideline-Concordant Therapy for Community-Acquired Pneumonia in the Hospitalized Population: A Systematic Review and Meta-analysis","year":2024,"lang":"en","type":"review","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University of Calgary","funders":"","keywords":"Medicine; Guideline; Odds ratio; Meta-analysis; Pneumonia; Intensive care unit; Mortality rate; Internal medicine; Adverse effect; Confidence interval; Rate ratio; Intensive care medicine; Emergency medicine; Pathology","score_opus":0.0982313649163227,"score_gpt":0.4250266487664899,"score_spread":0.3267952838501672,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399694624","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000014655624,0.976709,0.000018745119,0.0025377513,0.00009878265,0.019585084,0.0006778185,0.00009971611,0.00025846716],"genre_scores_gemma":[0.0010374106,0.9699746,0.0000082811885,0.010236177,0.0000358956,0.017278101,0.0010408439,0.0000925366,0.0002961582],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9949832,0.0018398671,0.00197111,0.0005380723,0.00030333432,0.00036442262],"domain_scores_gemma":[0.9967341,0.00064722187,0.0007653143,0.001499035,0.00018315691,0.00017116228],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0015960173,0.0007573658,0.008724463,0.00055358105,0.000557951,0.00046786043,0.0006213363,0.00019653836,0.00009607175],"category_scores_gemma":[0.00047717296,0.00037022753,0.0044237776,0.0018345623,0.000088487635,0.00018842162,0.00024698908,0.00042345442,0.000022629158],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009534997,0.00069473375,0.00033026104,0.8306649,0.16123487,0.000039921564,0.000087156586,0.0000014343666,1.0392154e-7,0.00029791266,0.004848784,0.0017903905],"study_design_scores_gemma":[0.00041978754,0.0003507952,0.00006618138,0.022115469,0.81588763,0.00018132907,0.000066783046,0.0000073079996,8.857747e-9,0.0003113421,0.16021913,0.00037422322],"about_ca_topic_score_codex":0.0006486477,"about_ca_topic_score_gemma":0.00047473772,"teacher_disagreement_score":0.80854946,"about_ca_system_score_codex":0.00016009256,"about_ca_system_score_gemma":0.0002300056,"threshold_uncertainty_score":0.99987495},"labels":[],"label_agreement":null},{"id":"W4400110034","doi":"10.1080/22423982.2024.2371111","title":"Prevalence of <i>Haemophilus influenzae</i> in the nasopharynx of children from regions with varying incidence of invasive <i>H. influenzae</i> serotype a disease: Canadian Immunization Research Network (CIRN) study","year":2024,"lang":"en","type":"article","venue":"International Journal of Circumpolar Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Children's Hospital of Eastern Ontario; McMaster University; NOSM University; St. Joseph’s Healthcare Hamilton; University of British Columbia; University of Ottawa; Hamilton Regional Laboratory Medicine Program; Public Health Agency of Canada","funders":"Canadian Immunization Research Network","keywords":"Haemophilus influenzae; Serotype; Incidence (geometry); Immunization; Disease; Pasteurellaceae; Medicine; Epidemiology; Virology; Pediatrics; Microbiology; Immunology; Biology; Antibody; Antibiotics; Internal medicine","score_opus":0.03646046581315819,"score_gpt":0.3578570772797527,"score_spread":0.3213966114665945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400110034","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9887596,0.0067368136,0.00009454678,0.0032360815,0.00023794001,0.0007196874,0.00013390838,0.000006306121,0.00007511401],"genre_scores_gemma":[0.9974147,0.0011834162,0.000051417534,0.0010441643,0.00025995134,0.0000103980055,0.0000135577875,0.000018057799,0.000004334045],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99665654,0.00061368704,0.001011039,0.0001849653,0.0012644024,0.00026934055],"domain_scores_gemma":[0.9969339,0.0006236182,0.0005465601,0.00032887186,0.0013184722,0.00024857785],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0020022378,0.00013216848,0.00036690474,0.0007717275,0.000115438306,0.000028573826,0.00056473,0.000061712395,0.0000174557],"category_scores_gemma":[0.000626586,0.00009569078,0.000102314014,0.00104149,0.00019695588,0.0003254023,0.000059397753,0.0007911859,0.0000019033308],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003072409,0.0003637063,0.9890554,0.0002723006,0.0003382003,0.0002068075,0.004832839,0.002274053,0.0013418075,0.00043441242,0.0002512464,0.0003220153],"study_design_scores_gemma":[0.0010704607,0.0010827122,0.9910273,0.0048067695,0.000110464476,0.00029767523,0.00038643266,0.00007315086,0.00014015254,0.00074411236,0.00018173656,0.00007906386],"about_ca_topic_score_codex":0.024846006,"about_ca_topic_score_gemma":0.0068961307,"teacher_disagreement_score":0.017949875,"about_ca_system_score_codex":0.0003373876,"about_ca_system_score_gemma":0.0059954794,"threshold_uncertainty_score":0.99963963},"labels":[],"label_agreement":null},{"id":"W4400409152","doi":"10.1016/j.chest.2024.03.004","title":"Response","year":2024,"lang":"en","type":"letter","venue":"CHEST Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Medicine; Traditional medicine; Intensive care medicine","score_opus":0.03192324281632637,"score_gpt":0.3045257405700687,"score_spread":0.27260249775374235,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400409152","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0034961984,0.00069264654,0.000026315895,0.98672694,0.0029875194,0.00008634837,0.000010113051,0.00008620972,0.005887708],"genre_scores_gemma":[0.00060130015,0.00012736049,0.000044998833,0.92096496,0.019035539,0.0000068737627,0.000011673352,0.00007488439,0.05913243],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988322,0.000113293296,0.00027782388,0.00017649656,0.00031873595,0.0002813995],"domain_scores_gemma":[0.9993225,0.00010384067,0.00008988177,0.00023718162,0.000097787066,0.00014881334],"candidate_categories":["research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00038177858,0.00020003361,0.00030046463,0.00038894024,0.00013653537,0.000118297125,0.000092800066,0.0006412408,0.0006232747],"category_scores_gemma":[0.00016792174,0.00014060497,0.00035404103,0.00015738283,0.000073421754,0.000037141108,0.000025807178,0.0058035087,0.0018196297],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004442416,0.000014695258,0.00009663775,0.00022608042,0.00015313052,0.0225781,0.000058585316,1.7871002e-7,0.00352392,9.223523e-7,0.97292584,0.00037751364],"study_design_scores_gemma":[0.00024542166,0.0002166342,0.0011849279,0.0005062905,0.00031114928,0.032176666,0.00001004628,0.0000016342093,0.00011464071,0.000112267946,0.9649826,0.00013766867],"about_ca_topic_score_codex":4.2334764e-7,"about_ca_topic_score_gemma":1.2967921e-7,"teacher_disagreement_score":0.065762006,"about_ca_system_score_codex":0.00020957217,"about_ca_system_score_gemma":0.00068403385,"threshold_uncertainty_score":0.9989576},"labels":[],"label_agreement":null},{"id":"W4400512481","doi":"10.3389/fpubh.2024.1402795","title":"Serotype distribution of invasive pneumococcal disease from countries of the WHO Africa, Americas, Eastern Mediterranean, South-East Asia, and Western Pacific regions: a systematic literature review from 2010 to 2021","year":2024,"lang":"en","type":"review","venue":"Frontiers in Public Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Pfizer","keywords":"Pneumococcal disease; East Asia; Serotype; Geography; Mediterranean climate; Distribution (mathematics); Disease; Medicine; China; Virology; Streptococcus pneumoniae; Biology; Microbiology","score_opus":0.05346207205817038,"score_gpt":0.31612472333886593,"score_spread":0.26266265128069555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400512481","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00012410339,0.9757546,0.00034603509,0.010067321,0.0018645317,0.0048466334,0.0069507807,0.000027705208,0.00001828401],"genre_scores_gemma":[0.00096620305,0.99589574,0.000032047912,0.0004540472,0.0003091194,0.00059479685,0.0013383918,0.000059556878,0.00035011765],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.9947774,0.0014797836,0.0019043637,0.0007276911,0.0006390492,0.00047170484],"domain_scores_gemma":[0.996329,0.00021897662,0.0012405847,0.0011902918,0.00028058075,0.0007405797],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008487526,0.00057794503,0.004006236,0.00042148642,0.0001062933,0.00010014409,0.00038218725,0.00033578384,0.000013979999],"category_scores_gemma":[0.0010872921,0.00035221977,0.0005422503,0.001815465,0.0003009034,0.00015124847,0.00019565906,0.0009795118,0.000021071155],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026266263,0.0001927051,0.0067388057,0.93085283,0.00079545897,0.000084098814,0.0043158084,1.2289858e-7,3.481017e-7,0.00003697419,0.037567947,0.019388651],"study_design_scores_gemma":[0.0001680607,0.00010442246,0.0011499443,0.5653093,0.0013912948,0.00002675918,0.0005388596,0.0000093965355,2.3645475e-8,0.000023637194,0.43108428,0.00019405308],"about_ca_topic_score_codex":0.00006152737,"about_ca_topic_score_gemma":0.000033007247,"teacher_disagreement_score":0.39351633,"about_ca_system_score_codex":0.0004364277,"about_ca_system_score_gemma":0.002609169,"threshold_uncertainty_score":0.99989295},"labels":[],"label_agreement":null},{"id":"W4400879543","doi":"10.1016/j.rpth.2024.102526","title":"The association of antiplatelet agents with mortality among patients with non–COVID-19 community-acquired pneumonia: a systematic review and meta-analysis","year":2024,"lang":"en","type":"review","venue":"Research and Practice in Thrombosis and Haemostasis","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; University of British Columbia; Université Laval; University of Manitoba; Centre hospitalier universitaire de Québec; University of Toronto; George & Fay Yee Centre for Healthcare Innovation; CancerCare Manitoba; Centre hospitalier de l'Université Laval","funders":"","keywords":"Meta-analysis; Medicine; Coronavirus disease 2019 (COVID-19); Pneumonia; Systematic review; 2019-20 coronavirus outbreak; Community-acquired pneumonia; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Intensive care medicine; MEDLINE; Internal medicine; Virology; Disease; Infectious disease (medical specialty); Outbreak; Biology","score_opus":0.3431001324095266,"score_gpt":0.5139768953733596,"score_spread":0.17087676296383297,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400879543","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0031239365,0.98936266,0.0000021157632,0.0024239137,0.000011410197,0.004500153,0.0002986625,0.000015231935,0.00026191844],"genre_scores_gemma":[0.008975621,0.9898143,0.000012921646,0.00032219404,0.0000071699255,0.00063453097,0.00009059357,0.00003607895,0.000106616455],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99186945,0.005189496,0.0010021436,0.00046534181,0.0010648257,0.00040876845],"domain_scores_gemma":[0.9895736,0.00775048,0.00093427836,0.0007818674,0.00061584054,0.0003439281],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.010047562,0.0004148861,0.0046790224,0.0005502586,0.0007867682,0.0002768174,0.00017047806,0.00025054967,0.000019947785],"category_scores_gemma":[0.0041960105,0.00019228505,0.00040335566,0.0024275065,0.00050362124,0.000299277,0.00021351842,0.0012796903,0.0000026460712],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046993402,0.00050036085,0.006663463,0.7846842,0.20605923,0.00004911385,0.00059039367,2.3478617e-7,2.0253182e-7,0.00001724804,0.000370115,0.0010184284],"study_design_scores_gemma":[0.0005710684,0.000857189,0.0062447544,0.030236136,0.93121797,0.00006699672,0.00066462206,0.00000450444,1.7396061e-7,0.000014150232,0.029837942,0.00028450874],"about_ca_topic_score_codex":0.0012111755,"about_ca_topic_score_gemma":0.0013705889,"teacher_disagreement_score":0.75444806,"about_ca_system_score_codex":0.00022749336,"about_ca_system_score_gemma":0.00039497775,"threshold_uncertainty_score":0.7841157},"labels":[],"label_agreement":null},{"id":"W4401010509","doi":"10.1007/s40121-024-01022-0","title":"Pediatric Pneumococcal Conjugate Vaccine and Dosing Schedule Perceptions Among Health Care Providers and Caregivers in Germany, France, Spain, and Greece","year":2024,"lang":"en","type":"article","venue":"Infectious Diseases and Therapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer","keywords":"Medicine; Vaccination; Dosing; Family medicine; Pneumococcal conjugate vaccine; Booster dose; Vaccination schedule; Pediatrics; Health care; Immunization; Streptococcus pneumoniae; Immunology; Internal medicine","score_opus":0.006643098488969675,"score_gpt":0.2674237725996613,"score_spread":0.26078067411069167,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401010509","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94913656,0.049071528,0.00002414668,0.00081362895,0.00014023906,0.0005822529,0.00003277174,0.0001339946,0.0000648658],"genre_scores_gemma":[0.973079,0.0260743,0.0000037883544,0.0005531258,0.00018129076,0.000049296003,0.000007973819,0.000025435373,0.000025759084],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999045,0.000076141834,0.00018473335,0.0003699705,0.000088789595,0.00023534341],"domain_scores_gemma":[0.99943525,0.00007826826,0.000038908893,0.000106635576,0.000041199393,0.00029972807],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007845441,0.0001948761,0.00027654658,0.00029567885,0.00030948882,0.00012636556,0.000016882115,0.00007921143,0.000016356236],"category_scores_gemma":[0.000014482711,0.00016224127,0.00004854895,0.0002457276,0.00013982612,0.00020288958,0.000025663692,0.00022019086,0.0000011891279],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003445932,0.00006776983,0.97103596,0.0005313478,0.00005742018,0.000050379153,0.0022363686,0.0000053922126,0.0006087881,0.00006781731,0.000029454157,0.025274862],"study_design_scores_gemma":[0.0020508473,0.0005767198,0.9928479,0.00015092001,0.000101237936,0.00014956084,0.0010047924,0.00020552492,0.0000029359808,0.0001001523,0.0026303972,0.00017897188],"about_ca_topic_score_codex":0.00033138666,"about_ca_topic_score_gemma":0.00019781193,"teacher_disagreement_score":0.02509589,"about_ca_system_score_codex":0.00005109644,"about_ca_system_score_gemma":0.00012529192,"threshold_uncertainty_score":0.6616007},"labels":[],"label_agreement":null},{"id":"W4401200560","doi":"10.1093/cid/ciae383","title":"A Phase 3 Clinical Study to Evaluate the Safety, Tolerability, and Immunogenicity of V116 in Pneumococcal Vaccine–Experienced Adults 50 Years of Age or Older (STRIDE-6)","year":2024,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Meso Scale Diagnostics","keywords":"Medicine; Immunogenicity; Tolerability; Pneumococcal conjugate vaccine; Serotype; Pneumococcal vaccine; Pneumococcal infections; Pneumococcal disease; Pediatrics; Streptococcus pneumoniae; Immunology; Internal medicine; Adverse effect; Antibody; Microbiology; Antibiotics","score_opus":0.05248748038116181,"score_gpt":0.45428376507864937,"score_spread":0.40179628469748757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401200560","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961313,0.0003709681,0.000028833327,0.00040108856,0.0007381477,0.002084938,0.00008158252,0.000097190365,0.000065969376],"genre_scores_gemma":[0.9989355,0.00030006337,0.0000028703305,0.00034747916,0.00022230695,0.00012599461,0.000006624098,0.000026110696,0.00003300034],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99577904,0.0008383877,0.0021263734,0.0006439492,0.00033576935,0.00027646095],"domain_scores_gemma":[0.9956487,0.0029779668,0.00015173318,0.0006601794,0.00018739427,0.0003740263],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001776507,0.00023053255,0.0010556185,0.000186509,0.00008026,0.00003261125,0.00017372222,0.00014748014,0.00015972767],"category_scores_gemma":[0.005072038,0.00014761848,0.00045841167,0.000814907,0.0004400254,0.00008964745,0.00024445733,0.0005593256,0.000016702978],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023285227,0.020562815,0.9377081,0.00020318181,0.000356081,0.00021170049,0.0010834764,0.000016684246,0.0010098261,0.000015774556,0.00011318153,0.036390696],"study_design_scores_gemma":[0.009280379,0.011189061,0.9766689,0.00041242008,0.00052809314,0.000020518708,0.00066880276,0.00019519006,0.000046459467,0.0000770698,0.0007507101,0.0001623944],"about_ca_topic_score_codex":0.00013570632,"about_ca_topic_score_gemma":0.00037110454,"teacher_disagreement_score":0.03896084,"about_ca_system_score_codex":0.00005665685,"about_ca_system_score_gemma":0.00050037727,"threshold_uncertainty_score":0.607207},"labels":[],"label_agreement":null},{"id":"W4401280651","doi":"10.1093/jac/dkae272","title":"Phenotypic and molecular characterization of <i>Streptococcus pneumoniae</i> serotype 3 isolates from blood and respiratory samples in Canada: CANWARD 2007–21","year":2024,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Sciences Centre; Manitoba Health; Public Health Agency of Canada; University of Manitoba","funders":"Merck Canada; Public Health Agency; Public Health Agency of Canada; University of Manitoba","keywords":"Streptococcus pneumoniae; Serotype; Microbiology; Biology; Respiratory system; Streptococcaceae; Blood culture; Respiratory disease; Virology; Immunology; Medicine; Antibiotics; Internal medicine; Lung","score_opus":0.00756634146925482,"score_gpt":0.22209881668964493,"score_spread":0.2145324752203901,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401280651","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99601775,0.00085253955,0.000057808837,0.0025848735,0.0002433549,0.0001610928,0.000055591205,0.000008395923,0.000018605955],"genre_scores_gemma":[0.9958766,0.0010449078,0.000060644154,0.0028139919,0.00016029483,0.0000011665824,0.0000055944415,0.00002633112,0.000010479534],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990662,0.000040928437,0.0004718698,0.0001581898,0.00011822233,0.00014460894],"domain_scores_gemma":[0.9994717,0.000044510583,0.00018373184,0.00010019174,0.000100721794,0.00009912888],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011808294,0.00014745719,0.00039237316,0.0001739247,0.000029276569,0.000027281865,0.000050536222,0.00008597431,0.000037254827],"category_scores_gemma":[0.000016961698,0.00012360958,0.00006228565,0.00017845466,0.000060081715,0.00010734108,0.00001305377,0.00026080816,4.2358073e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005987054,0.000065146356,0.11494526,0.000100049874,0.00016016322,0.000109876,0.0001722349,0.000003353347,0.8829174,0.000004930835,0.00019346522,0.00126827],"study_design_scores_gemma":[0.0021064598,0.00034327342,0.2658262,0.00092539634,0.00018783791,0.0002358176,0.000042887157,0.000033348875,0.7142292,0.000029300822,0.015852135,0.00018811633],"about_ca_topic_score_codex":0.013794934,"about_ca_topic_score_gemma":0.011230763,"teacher_disagreement_score":0.16868813,"about_ca_system_score_codex":0.00008125753,"about_ca_system_score_gemma":0.00093138346,"threshold_uncertainty_score":0.9927723},"labels":[],"label_agreement":null},{"id":"W4401284237","doi":"10.1016/j.japh.2024.102202","title":"Changing the conversation: Empowering community pharmacists to address pneumococcal vaccine hesitancy","year":2024,"lang":"en","type":"article","venue":"Journal of the American Pharmacists Association","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Merck Canada","keywords":"Medicine; Pharmacist; Family medicine; Pneumococcal vaccine; Conversation; Public health; Agency (philosophy); Randomized controlled trial; Community pharmacist; Nursing; Streptococcus pneumoniae; Pharmacy; Internal medicine","score_opus":0.02082976614765439,"score_gpt":0.354486242982134,"score_spread":0.33365647683447963,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401284237","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97625786,0.00017333722,0.00024620458,0.020329248,0.0022212288,0.0003009375,0.00001383566,0.00005576517,0.00040160943],"genre_scores_gemma":[0.9944348,0.000100585705,0.00001435274,0.0038574522,0.0010224703,0.000011431872,0.0000016431669,0.000024630812,0.00053263287],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9981446,0.00048178446,0.00046023147,0.00010102438,0.0005422928,0.0002700345],"domain_scores_gemma":[0.9982648,0.0004308431,0.0006281514,0.00021910273,0.00030880328,0.00014830894],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015854259,0.00015277606,0.00032705598,0.00024959457,0.00046920025,0.00010082103,0.0002792504,0.000031354626,0.00006223786],"category_scores_gemma":[0.00035983778,0.00008902395,0.00031801226,0.0011511768,0.000037557365,0.00019384718,0.00009084694,0.0010527835,0.000035312813],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005261923,0.00053657277,0.13158078,0.00026199303,0.002422862,0.00027342964,0.02392998,0.00055095623,0.77177674,0.000039778184,0.02938336,0.03871734],"study_design_scores_gemma":[0.0071929,0.00196332,0.6291074,0.0015681501,0.004298414,0.00849392,0.007708232,0.004619295,0.11724576,0.00034535743,0.21631008,0.0011471824],"about_ca_topic_score_codex":0.0000044161848,"about_ca_topic_score_gemma":0.0000013528588,"teacher_disagreement_score":0.654531,"about_ca_system_score_codex":0.0008816885,"about_ca_system_score_gemma":0.0001562454,"threshold_uncertainty_score":0.4573879},"labels":[],"label_agreement":null},{"id":"W4401443102","doi":"10.1128/mbio.01360-24","title":"Holistic understanding of trimethoprim resistance in <i>Streptococcus pneumoniae</i> using an integrative approach of genome-wide association study, resistance reconstruction, and machine learning","year":2024,"lang":"en","type":"article","venue":"mBio","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research; Alliance de recherche numérique du Canada","keywords":"Streptococcus pneumoniae; Genome-wide association study; Computational biology; Antibiotic resistance; Genome; In silico; Biology; Genetics; Gene; Genotype; Single-nucleotide polymorphism; Antibiotics","score_opus":0.06525393288307842,"score_gpt":0.31373412017819285,"score_spread":0.24848018729511445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401443102","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9893716,0.0011622664,0.0062002763,0.0001183923,0.00012976202,0.00052947097,0.000023335848,0.000050504997,0.0024143849],"genre_scores_gemma":[0.99852574,0.00007004354,0.00077557366,0.000016999045,0.00003478053,0.000014695083,0.0000088326915,0.00002033532,0.0005330172],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99853534,0.00028648728,0.00047963858,0.00032292565,0.00020861343,0.0001669702],"domain_scores_gemma":[0.99913585,0.00032332118,0.00022488627,0.00015781277,0.00009743413,0.00006070055],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00077084464,0.00014879499,0.0004168467,0.000357558,0.00010960016,0.000028157545,0.000046246143,0.000104369414,0.000007082202],"category_scores_gemma":[0.0004927545,0.00013099218,0.00006069205,0.0007084302,0.00010869861,0.00015224393,0.000021879163,0.00042608997,2.855192e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008509982,0.00029979975,0.9374317,0.00046846757,0.00015704481,0.00001953561,0.00442699,0.00013049299,0.056265857,0.0004690678,0.000008708943,0.00023726218],"study_design_scores_gemma":[0.0069250874,0.0020765,0.8957608,0.004461482,0.0013830547,0.00006691561,0.059487015,0.009452566,0.008924352,0.007557544,0.0027000005,0.001204681],"about_ca_topic_score_codex":0.000067981484,"about_ca_topic_score_gemma":0.0005636813,"teacher_disagreement_score":0.05506002,"about_ca_system_score_codex":0.00063983205,"about_ca_system_score_gemma":0.00015150782,"threshold_uncertainty_score":0.53417057},"labels":[],"label_agreement":null},{"id":"W4401560114","doi":"10.1016/s2468-2667(24)00189-0","title":"New-generation pneumococcal vaccines for children","year":2024,"lang":"en","type":"article","venue":"The Lancet Public Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Medicine; Pneumococcal infections; Virology; Streptococcus pneumoniae; Intensive care medicine; Biology; Microbiology","score_opus":0.10158135292361778,"score_gpt":0.37138269996455603,"score_spread":0.2698013470409383,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401560114","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.23333374,0.0011191267,0.013512025,0.7479695,0.0012096758,0.001119193,0.00004249701,0.00048270795,0.001211559],"genre_scores_gemma":[0.9671247,0.0002650207,0.00029861432,0.017629031,0.012055458,0.000111183,0.00014499231,0.00003206636,0.002338908],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991095,0.000061612736,0.00019086654,0.00017959734,0.000109390865,0.00034903153],"domain_scores_gemma":[0.9993873,0.0000600872,0.000031241096,0.00026614952,0.000042775053,0.00021242567],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00067528844,0.0000913329,0.00022109295,0.0000859159,0.00022601454,0.000099468525,0.00008391556,0.000049864924,0.00006730266],"category_scores_gemma":[0.0000873921,0.000052459218,0.000078841,0.00026352672,0.000014621606,0.00009377767,0.000015749445,0.0001925329,0.000055960783],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018805153,0.00009425348,0.016165795,0.00026590936,0.00020389429,0.0000025236343,0.00085063605,0.000014307701,0.013155663,0.036303043,0.7024721,0.23045306],"study_design_scores_gemma":[0.00066845206,0.00029969873,0.117188044,0.000036911213,0.000022791593,0.00014900437,0.000017413964,0.0011767413,0.00009338627,0.00035012545,0.879917,0.00008040021],"about_ca_topic_score_codex":0.00006560714,"about_ca_topic_score_gemma":0.000062765306,"teacher_disagreement_score":0.733791,"about_ca_system_score_codex":0.00008505477,"about_ca_system_score_gemma":0.0009884308,"threshold_uncertainty_score":0.21392249},"labels":[],"label_agreement":null},{"id":"W4401875672","doi":"10.1186/s12913-024-11400-6","title":"Regional differences in pediatric pneumococcal vaccine schedules for Indigenous children in Canada: an environmental scan","year":2024,"lang":"en","type":"article","venue":"BMC Health Services Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Indigenous; Pneumococcal conjugate vaccine; Medicine; Public health; Vaccination; Environmental health; Population; Health policy; Health administration; Health informatics; Economic growth; Nursing; Streptococcus pneumoniae; Immunology","score_opus":0.04093065806214413,"score_gpt":0.36334488846986457,"score_spread":0.32241423040772044,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401875672","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936565,0.0033431973,0.0000048064426,0.0011955764,0.00010875217,0.0015663498,0.00007827071,0.00002874529,0.000017795921],"genre_scores_gemma":[0.99716157,0.001326496,0.000053841995,0.0005127849,0.00045072098,0.00028265352,0.00014399568,0.000028791963,0.00003915263],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9972997,0.0002889478,0.00045311035,0.00049265404,0.0006082213,0.0008573754],"domain_scores_gemma":[0.9989596,0.00027746076,0.00003877818,0.00024638203,0.000030108095,0.00044767608],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009040553,0.00015906479,0.00033231493,0.00083687063,0.00024478824,0.00004159902,0.0002114324,0.00010287116,0.000044150132],"category_scores_gemma":[0.000009258444,0.00013261735,0.000044480126,0.00078366406,0.000029687257,0.00012836841,0.000064288004,0.0007367033,0.000015831352],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007560471,0.00024251646,0.9948635,0.0013720966,0.000009565957,0.000024403193,0.0009977815,0.000014031751,0.00019869399,0.000031232194,0.000008822113,0.0021617613],"study_design_scores_gemma":[0.0007755794,0.00056070136,0.9945292,0.0002153825,0.000006243809,0.000038861603,0.0014609287,0.0017187954,0.000012529362,0.000063258085,0.0005083887,0.00011016084],"about_ca_topic_score_codex":0.5569535,"about_ca_topic_score_gemma":0.94819003,"teacher_disagreement_score":0.3912366,"about_ca_system_score_codex":0.0017833997,"about_ca_system_score_gemma":0.009009665,"threshold_uncertainty_score":0.9966083},"labels":[],"label_agreement":null},{"id":"W4402554814","doi":"10.1080/14760584.2024.2404636","title":"Adult indication 13-valent pneumococcal conjugate vaccine clinical development overview: formulation, safety, immunogenicity (dosing and sequence), coadministration, and efficacy","year":2024,"lang":"en","type":"review","venue":"Expert Review of Vaccines","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer","keywords":"Immunogenicity; Medicine; Pneumococcal conjugate vaccine; Serotype; Dosing; Pneumococcal pneumonia; Vaccine efficacy; Pneumococcal polysaccharide vaccine; Streptococcus pneumoniae; Clinical trial; Pneumococcal disease; Immunology; Pneumonia; Virology; Internal medicine; Antibody; Antibiotics; Biology; Microbiology","score_opus":0.08918255257438873,"score_gpt":0.454827757290332,"score_spread":0.36564520471594325,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402554814","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0010112575,0.9943638,0.000028912094,0.00126978,0.00044354508,0.0026811203,0.0000341874,0.00008709875,0.00008031152],"genre_scores_gemma":[0.00046425304,0.99720776,0.00027076234,0.0008291659,0.00044049456,0.00020863132,0.0004464567,0.00006791869,0.000064544605],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9948453,0.00032421635,0.003418049,0.00077414553,0.00035140844,0.00028692084],"domain_scores_gemma":[0.9972637,0.00031658015,0.0011191072,0.0005814369,0.00044482495,0.0002743284],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010733891,0.00067716633,0.003122583,0.00026755693,0.00022684368,0.000048905644,0.00016406499,0.0004042251,0.00005942138],"category_scores_gemma":[0.0007036871,0.00045751192,0.0005856159,0.0005234943,0.000067325236,0.00015425937,0.00018518472,0.0005696239,0.00003751474],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028025668,0.00023823345,0.0005587563,0.15592386,0.0006595994,0.000015733121,0.0001185505,3.389792e-8,0.000078050616,0.0002187992,0.0012678177,0.84089255],"study_design_scores_gemma":[0.00069632963,0.00024569375,0.004066801,0.16955374,0.0021576716,0.00060530356,0.000008072977,0.000006443338,0.000018445908,0.000011004391,0.82225966,0.0003708027],"about_ca_topic_score_codex":0.000011113089,"about_ca_topic_score_gemma":0.000014869978,"teacher_disagreement_score":0.84052175,"about_ca_system_score_codex":0.00015273917,"about_ca_system_score_gemma":0.0010135563,"threshold_uncertainty_score":0.9997877},"labels":[],"label_agreement":null},{"id":"W4402554906","doi":"10.1080/21645515.2024.2400751","title":"An economic evaluation of pneumococcal conjugate vaccines, PCV20 versus PCV15, for the prevention of pneumococcal disease in the Swedish pediatric population","year":2024,"lang":"en","type":"article","venue":"Human Vaccines & Immunotherapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer","keywords":"Medicine; Pneumococcal conjugate vaccine; Population; Pneumococcal pneumonia; Cost effectiveness; Quality-adjusted life year; Pediatrics; Indirect costs; Demography; Environmental health; Streptococcus pneumoniae","score_opus":0.07304766164792943,"score_gpt":0.3946732201482089,"score_spread":0.32162555850027946,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402554906","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9931137,0.0030398297,0.00013098634,0.0006752478,0.00087586965,0.0020284497,0.000038489325,0.00005091031,0.000046501573],"genre_scores_gemma":[0.9984492,0.00036233637,0.000007782081,0.000063969004,0.0006072893,0.0002779498,0.0001497453,0.00004614731,0.00003558757],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981087,0.0002720995,0.00078140036,0.00029609294,0.00031472967,0.00022699987],"domain_scores_gemma":[0.9985165,0.00038445188,0.00024741248,0.00059776707,0.0002034247,0.00005044282],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013308024,0.00022580876,0.00031945136,0.00027785636,0.00019337874,0.000056524463,0.00024062752,0.000100429985,0.00010329898],"category_scores_gemma":[0.000052220585,0.000148008,0.0002784209,0.00030971656,0.000037430567,0.00021878134,0.000020319349,0.000223588,0.000005980323],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0052281762,0.0034693521,0.56802195,0.0024045787,0.0017449965,0.000012293317,0.0049369484,0.01823069,0.33299053,0.013266349,0.0002385516,0.049455572],"study_design_scores_gemma":[0.0042856717,0.0009844506,0.9575144,0.000104438186,0.0021257796,0.000009134327,0.00024120243,0.031143382,0.00035178178,0.0015705253,0.0014758705,0.0001933798],"about_ca_topic_score_codex":0.00008474029,"about_ca_topic_score_gemma":0.00021716817,"teacher_disagreement_score":0.38949242,"about_ca_system_score_codex":0.0001577088,"about_ca_system_score_gemma":0.00028465095,"threshold_uncertainty_score":0.6035591},"labels":[],"label_agreement":null},{"id":"W4402580342","doi":"10.1007/s13346-024-01708-5","title":"Pneumolysin-responsive liposomal platform for selective treatment of Streptococcus pneumoniae","year":2024,"lang":"en","type":"article","venue":"Drug Delivery and Translational Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; NanoMedicines Innovation Network","keywords":"Pneumolysin; Streptococcus pneumoniae; Microbiology; Pneumococcal infections; Biology; Polymyxin B; Pasteurella multocida; Polymyxin; Antibiotics; Bacteria","score_opus":0.07449958738372456,"score_gpt":0.38990823976141203,"score_spread":0.31540865237768745,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402580342","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99273086,0.0018791754,0.00006329981,0.002176721,0.00009059251,0.0011236168,0.0002736258,0.000045072702,0.0016170217],"genre_scores_gemma":[0.9981018,0.00038890206,0.00004509778,0.000022159385,0.00017868001,0.00023434054,0.000066060624,0.000019831134,0.0009431687],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986452,0.000067254514,0.00024099676,0.00032421242,0.00041154254,0.000310787],"domain_scores_gemma":[0.99742395,0.001826154,0.000019032661,0.000117433156,0.00045576433,0.00015767802],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003230227,0.00013794762,0.00023565767,0.00048424694,0.00026024765,0.00003553609,0.00003939499,0.00008907828,0.00003829554],"category_scores_gemma":[0.000050436585,0.00010739636,0.00018178696,0.0004411768,0.00021005473,0.0001466684,0.000008840691,0.00019797783,0.000016598853],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0031324406,0.0019574647,0.053730562,0.0013379923,0.002331203,0.00034252665,0.010605399,0.00017649069,0.655606,0.026514105,0.00096101855,0.24330479],"study_design_scores_gemma":[0.01110508,0.013026862,0.4053422,0.00122938,0.001205598,0.0004918182,0.0023118951,0.020582544,0.2456883,0.01900713,0.27900425,0.0010049477],"about_ca_topic_score_codex":0.000036507947,"about_ca_topic_score_gemma":0.00005754022,"teacher_disagreement_score":0.4099177,"about_ca_system_score_codex":0.00007302396,"about_ca_system_score_gemma":0.0006907432,"threshold_uncertainty_score":0.43794963},"labels":[],"label_agreement":null},{"id":"W4402885078","doi":"10.1016/j.vaccine.2024.126379","title":"Effectiveness of the ten- and thirteen-valent pneumococcal conjugate vaccines to prevent serotype 19A invasive pneumococcal disease in Quebec, Canada. A Canadian immunization research network (CIRN) study","year":2024,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Institut Universitaire de Cardiologie et de Pneumologie de Québec; Centre Hospitalier de l’Université de Montréal; Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine; Centre hospitalier universitaire de Québec; Institut National de Santé Publique du Québec","funders":"","keywords":"Pneumococcal disease; Pneumococcal conjugate vaccine; Serotype; Immunization; Medicine; Streptococcus pneumoniae; Virology; Conjugate; Pneumococcal infections; Immunology; Pediatrics; Biology; Microbiology; Antibody; Antibiotics","score_opus":0.014767605741834222,"score_gpt":0.2955448708220449,"score_spread":0.28077726508021067,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402885078","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98920774,0.0007455055,0.0000025122786,0.005789333,0.000499329,0.0036192245,0.000030908574,0.000029465627,0.000075959615],"genre_scores_gemma":[0.9987623,0.000070468195,0.0000011438296,0.00015094895,0.00015785312,0.00029671655,0.000015966514,0.00003806376,0.0005065569],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.997356,0.00085424987,0.0004139696,0.00045116094,0.000377386,0.00054724637],"domain_scores_gemma":[0.9981058,0.0005046702,0.00004275836,0.0005116783,0.00029605112,0.0005389919],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010922466,0.00022781902,0.00040234954,0.00039881733,0.00028039512,0.00004926024,0.00018763257,0.00008131925,0.000030902098],"category_scores_gemma":[0.0004739813,0.00015673724,0.00006154139,0.0017419383,0.0000231058,0.00008881118,0.00019454025,0.0005315314,0.000007408874],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031779023,0.00034768268,0.97805834,0.00075405167,0.00015975998,0.0002991517,0.0005571531,0.0015478394,0.016826408,0.00014380908,0.0006684014,0.00031963724],"study_design_scores_gemma":[0.00084575516,0.00038588748,0.9937249,0.001447623,0.00011849212,0.000014987214,0.0002651615,0.00022535356,0.0006402996,0.00006917835,0.0021082514,0.0001541409],"about_ca_topic_score_codex":0.90054214,"about_ca_topic_score_gemma":0.9960866,"teacher_disagreement_score":0.09554447,"about_ca_system_score_codex":0.00076703355,"about_ca_system_score_gemma":0.004262743,"threshold_uncertainty_score":0.7561923},"labels":[],"label_agreement":null},{"id":"W4402923445","doi":"10.1080/14760584.2024.2409662","title":"Pneumococcal serotypes missing prespecified efficacy threshold in immunogenicity trials: real-world evidence from national immunization programs","year":2024,"lang":"en","type":"article","venue":"Expert Review of Vaccines","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer","keywords":"Immunogenicity; Immunization; Medicine; Serotype; Virology; Immunology; Antibody","score_opus":0.1365160932575724,"score_gpt":0.4417420847142275,"score_spread":0.3052259914566551,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402923445","genre_codex":"review","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.29060742,0.6930192,0.00014991705,0.009539335,0.0010042838,0.002838031,0.00001360092,0.0002807684,0.002547437],"genre_scores_gemma":[0.7282026,0.26884103,0.0005278689,0.00063584174,0.001098524,0.0002595042,0.00012535295,0.00004986517,0.00025941504],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99757695,0.00031275404,0.0011824202,0.0003572116,0.00038751765,0.00018312945],"domain_scores_gemma":[0.99825495,0.0008314216,0.0002060684,0.00035901583,0.0002738853,0.00007466863],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013843788,0.00022261546,0.00087375805,0.00025717646,0.00006748069,0.000052133277,0.00016337346,0.00008987773,0.00035779513],"category_scores_gemma":[0.0018353111,0.00015669211,0.00033723257,0.0009943567,0.0000342133,0.00026327075,0.00005696593,0.00025419466,0.000027458353],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042015078,0.0010937088,0.031532094,0.008500989,0.00055330206,0.0000631274,0.0010110214,0.000025551333,0.8001474,0.00087730057,0.004456712,0.15131862],"study_design_scores_gemma":[0.00307159,0.00062278705,0.38012326,0.3195065,0.0006773831,0.000092266404,0.00010598676,0.0016855292,0.037947007,0.0007217763,0.2545523,0.00089360896],"about_ca_topic_score_codex":0.0003048408,"about_ca_topic_score_gemma":0.000084070656,"teacher_disagreement_score":0.7622004,"about_ca_system_score_codex":0.00015047065,"about_ca_system_score_gemma":0.00033858555,"threshold_uncertainty_score":0.63897187},"labels":[],"label_agreement":null},{"id":"W4402925364","doi":"10.51731/cjht.2024.989","title":"Cost-Effectiveness of Conjugate Pneumococcal Vaccines in At-Risk Adults Aged 18 to 64 Years","year":2024,"lang":"en","type":"article","venue":"Canadian Journal of Health Technologies","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Conjugate; Pneumococcal conjugate vaccine; Medicine; Pneumococcal disease; Virology; Streptococcus pneumoniae; Biology; Mathematics; Microbiology; Antibiotics","score_opus":0.03914414147732651,"score_gpt":0.33787295240153004,"score_spread":0.2987288109242035,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402925364","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98536026,0.0082359705,0.00005075938,0.0049965866,0.00053813856,0.00063998887,0.00004457079,0.000077519806,0.000056175744],"genre_scores_gemma":[0.99927694,0.00045234308,0.000038463124,0.00015319625,0.000015347085,0.000023838464,0.0000016008106,0.000017331913,0.000020942782],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99865025,0.00015325237,0.00055195316,0.00015964491,0.000116878306,0.00036804107],"domain_scores_gemma":[0.9991665,0.0001821917,0.00016311654,0.00019544153,0.00011686837,0.00017588703],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009957512,0.00012282668,0.00048699978,0.0014156016,0.0000927407,0.000014473404,0.00014776835,0.00015891144,0.000023714754],"category_scores_gemma":[0.0007417365,0.00010133634,0.000100923484,0.000754063,0.000109194334,0.00006482981,0.000023623315,0.0006185326,0.000015135766],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044439136,0.00010383179,0.5562892,0.0024893282,0.00022598299,0.0033235624,0.0017386788,0.00038709794,0.015969604,0.00035237515,0.0022373411,0.4164386],"study_design_scores_gemma":[0.0011394928,0.0014703197,0.9414789,0.003632799,0.000033021373,0.0006912293,0.0011295377,0.000020012074,0.0028653326,0.00044585948,0.046963725,0.00012977066],"about_ca_topic_score_codex":0.003310954,"about_ca_topic_score_gemma":0.013612781,"teacher_disagreement_score":0.41630885,"about_ca_system_score_codex":0.0007339753,"about_ca_system_score_gemma":0.0019508223,"threshold_uncertainty_score":0.75962514},"labels":[],"label_agreement":null},{"id":"W4402935977","doi":"10.21037/tp-24-218","title":"Association of serum interleukin-17 level and Mycoplasma pneumoniae pneumonia in children: a systematic review and meta-analysis","year":2024,"lang":"en","type":"review","venue":"Translational Pediatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Ministry of Higher Education, Science, Research and Innovation, Thailand","keywords":"Medicine; Meta-analysis; Mycoplasma pneumoniae; Pneumonia; Mycoplasma pneumonia; Systematic review; Immunology; MEDLINE; Internal medicine","score_opus":0.063499335606437,"score_gpt":0.3417925612800361,"score_spread":0.2782932256735991,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402935977","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00010222855,0.9943857,0.000017656206,0.0010166327,0.000042838434,0.002427086,0.0019012041,0.00003624453,0.00007041968],"genre_scores_gemma":[0.0008806368,0.99715877,0.000039237286,0.0001883622,0.00006555448,0.00023651158,0.00019269402,0.000046976078,0.001191272],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9965317,0.00032241503,0.001798838,0.00053604186,0.00057335384,0.00023761744],"domain_scores_gemma":[0.9980785,0.00052562734,0.000790671,0.00031094844,0.00015933091,0.00013489323],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010253474,0.000520308,0.006092176,0.0013662768,0.000053446824,0.000039371273,0.00010615043,0.0004311027,0.000066761204],"category_scores_gemma":[0.00017654926,0.00036243143,0.0018690493,0.0021940232,0.00004129597,0.00009622658,0.000035082558,0.00068141025,0.000019226438],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000010198112,0.00008472904,0.0062413183,0.9154829,0.07745213,0.000010645225,0.00007070228,0.0000040772493,3.5252495e-7,0.000053280983,0.00011461064,0.00048428014],"study_design_scores_gemma":[0.00017692223,0.000050503713,0.0014624018,0.009891593,0.9842518,0.00028313333,0.0000029021282,0.000015671225,2.8758839e-8,0.000030211915,0.0035439846,0.00029083405],"about_ca_topic_score_codex":0.0000107126525,"about_ca_topic_score_gemma":0.00006911586,"teacher_disagreement_score":0.9067997,"about_ca_system_score_codex":0.00012617954,"about_ca_system_score_gemma":0.0003215927,"threshold_uncertainty_score":0.99988276},"labels":[],"label_agreement":null},{"id":"W4403002470","doi":"10.1016/j.vaccine.2024.126390","title":"National recommendations for adult pneumococcal vaccination in countries of the WHO regions of Americas, Africa, Eastern Mediterranean, South East Asia, and Western Pacific","year":2024,"lang":"en","type":"review","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer","keywords":"Geography; Mediterranean climate; East Asia; Vaccination; Medicine; Virology; China; Archaeology","score_opus":0.07494243069277495,"score_gpt":0.3521122328802445,"score_spread":0.27716980218746956,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403002470","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0012472826,0.9711133,0.0002357486,0.017709885,0.001307178,0.0047356463,0.0024886127,0.00008448492,0.0010778226],"genre_scores_gemma":[0.022605853,0.9733906,0.000044086875,0.00012119058,0.00049345905,0.0006524871,0.00036787565,0.00009642296,0.0022280742],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99806356,0.00012369729,0.00097132317,0.0003497661,0.0002953133,0.00019632667],"domain_scores_gemma":[0.9982316,0.0002390416,0.00057799515,0.00031115525,0.0005643165,0.00007591912],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002719915,0.0003116644,0.0011914275,0.0006199661,0.0000862413,0.000021113625,0.00014686407,0.00022688055,0.000032069136],"category_scores_gemma":[0.0003170618,0.0001983022,0.0003568337,0.0007980797,0.00004026452,0.000080346756,0.000078668054,0.0003807672,0.000009551367],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035474368,0.0023167643,0.025722183,0.18519098,0.0037937125,0.000033612003,0.017859826,0.000015953818,0.00016465389,0.010308649,0.053291336,0.7009476],"study_design_scores_gemma":[0.00094030064,0.00025875773,0.0019839853,0.014076901,0.0015368026,0.00012657826,0.0005227166,0.00015056501,0.0000025278944,0.00012762533,0.9800604,0.0002128212],"about_ca_topic_score_codex":0.000007022246,"about_ca_topic_score_gemma":0.000065680826,"teacher_disagreement_score":0.9267691,"about_ca_system_score_codex":0.000114709524,"about_ca_system_score_gemma":0.0004038548,"threshold_uncertainty_score":0.8086529},"labels":[],"label_agreement":null},{"id":"W4403038820","doi":"10.1111/cts.70040","title":"Pharmacokinetic model‐guided enoxaparin dosing in the Neonatal ICU: Retrospective cohort study to plan for prospective feasibility trial","year":2024,"lang":"en","type":"article","venue":"Clinical and Translational Science","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Ontario; University of Toronto; Hospital for Sick Children","funders":"","keywords":"Dosing; Medicine; Pharmacokinetics; Dose; Retrospective cohort study; Pharmacodynamics; Anesthesia; Therapeutic index; Pharmacology; Surgery; Drug","score_opus":0.13199884522864072,"score_gpt":0.46283440930885517,"score_spread":0.3308355640802144,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403038820","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9895009,0.000030895146,0.0030915404,0.0023684206,0.00033220235,0.0040995628,0.000031011637,0.000031127376,0.00051433226],"genre_scores_gemma":[0.9990144,0.0000034411617,0.00015541285,0.00036399066,0.00023720552,0.00018780977,0.000003001541,0.000004798284,0.000029969133],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99841034,0.000050673487,0.0003916671,0.0005457353,0.00042271684,0.00017883875],"domain_scores_gemma":[0.9992165,0.00041138963,0.000021828,0.00012385062,0.00010473,0.000121676014],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026817776,0.0000956804,0.00021212426,0.00009769207,0.00024318225,0.00007084925,0.00010785127,0.000034877918,0.000008971683],"category_scores_gemma":[0.00032134535,0.0000587542,0.00008554116,0.0006302291,0.0004243408,0.00013456562,0.000017483011,0.00027032645,0.0000029700902],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019061824,0.000700251,0.99137473,0.000013515361,0.000026358564,0.000009618761,0.001600752,0.0003018735,0.00046061608,0.0022763517,0.000025242116,0.0013045094],"study_design_scores_gemma":[0.007909769,0.0011170151,0.9630513,0.000024169514,0.000078244855,0.000014665633,0.00007947645,0.022590598,0.000024535311,0.004905746,0.00012630661,0.00007817507],"about_ca_topic_score_codex":0.000014355985,"about_ca_topic_score_gemma":0.000057112426,"teacher_disagreement_score":0.02832343,"about_ca_system_score_codex":0.000042036183,"about_ca_system_score_gemma":0.00032565612,"threshold_uncertainty_score":0.23959269},"labels":[],"label_agreement":null},{"id":"W4403119449","doi":"10.1101/2024.10.04.24314906","title":"Economic Analysis of 15-valent and 20-valent Pneumococcal Conjugate Vaccines among Older Adults in Ontario, Canada","year":2024,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Ontario; University of Toronto; University Health Network","funders":"University of Toronto; Sanofi","keywords":"Pneumococcal conjugate vaccine; Pneumococcal disease; Conjugate; Medicine; Environmental health; Streptococcus pneumoniae; Microbiology; Biology; Mathematics","score_opus":0.008715491328057866,"score_gpt":0.24112122600643449,"score_spread":0.2324057346783766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403119449","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960089,0.00052623835,9.560434e-7,0.0006807706,0.0011687045,0.0006534978,0.00013860945,0.0000346038,0.00078773714],"genre_scores_gemma":[0.99852014,0.00015881567,0.0000044949893,0.00012079425,0.000091094495,0.00010683338,0.000084562096,0.000033697026,0.00087959366],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99783957,0.00007093299,0.00083691964,0.0007245042,0.00021821569,0.00030984363],"domain_scores_gemma":[0.99879706,0.000074063544,0.00023672056,0.0005670396,0.000075347845,0.00024977123],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00024052266,0.00037421891,0.0011469309,0.00079716626,0.00003919787,0.000024310111,0.0001358144,0.00026917763,0.00043243312],"category_scores_gemma":[0.000027761189,0.000321677,0.00032547893,0.0002530049,0.00008013629,0.000025889816,0.00036551722,0.001023769,0.000008022094],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003531394,0.0000900248,0.99373233,0.0006518944,0.001590456,0.00019258745,0.00058168883,0.0020978157,0.0006025352,0.0000070034066,0.00030063424,0.00011769019],"study_design_scores_gemma":[0.0006779826,0.00005645612,0.9916684,0.0008704275,0.002584681,0.000013969385,0.000098450575,0.0022509764,0.00036253044,0.000024327446,0.0011252497,0.0002665301],"about_ca_topic_score_codex":0.9086532,"about_ca_topic_score_gemma":0.9982504,"teacher_disagreement_score":0.08959727,"about_ca_system_score_codex":0.00085871335,"about_ca_system_score_gemma":0.0018039132,"threshold_uncertainty_score":0.9999235},"labels":[],"label_agreement":null},{"id":"W4403379030","doi":"10.1542/hpeds.2024-008040","title":"Challenges in Validation of Novel Diagnostic Tools for Pediatric Pneumonia: When Will We Find “The One”?","year":2024,"lang":"en","type":"letter","venue":"Hospital Pediatrics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"","keywords":"Medicine; Pneumonia; Intensive care medicine; Medical physics; Internal medicine","score_opus":0.07072925855194895,"score_gpt":0.28572425520921985,"score_spread":0.2149949966572709,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403379030","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.054337848,0.018995553,0.00017650278,0.9178116,0.0039080977,0.0032967024,0.00069269206,0.00013889933,0.00064216275],"genre_scores_gemma":[0.33031476,0.29571247,0.0012139514,0.20233852,0.15439169,0.005800588,0.003189513,0.0014344599,0.005604085],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9971854,0.000057202134,0.00086071104,0.0006871452,0.0006638655,0.0005456601],"domain_scores_gemma":[0.9946894,0.0039001196,0.00040439432,0.0006311706,0.00028359538,0.00009132179],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00039152853,0.00047580458,0.0007660343,0.00079397496,0.00008777238,0.000086163345,0.0002997363,0.0011289745,0.000019883995],"category_scores_gemma":[0.0027963277,0.00037394062,0.00046283565,0.00062832696,0.00008170889,0.00024570257,0.00011968091,0.0019325719,0.000056728466],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003379608,0.0020397543,0.020689009,0.019681897,0.0003124298,0.00044329773,0.002885075,0.00010635988,0.00015963959,0.00034342572,0.94576335,0.007541947],"study_design_scores_gemma":[0.0024050549,0.0025154343,0.0259687,0.00056062633,0.004561771,0.000076526274,0.0002231042,0.000057437388,0.000060710685,0.0017338275,0.96073157,0.0011052513],"about_ca_topic_score_codex":0.000010760689,"about_ca_topic_score_gemma":0.0000086137115,"teacher_disagreement_score":0.71547306,"about_ca_system_score_codex":0.0001808661,"about_ca_system_score_gemma":0.00042419857,"threshold_uncertainty_score":0.99987125},"labels":[],"label_agreement":null},{"id":"W4403629428","doi":"10.1101/2024.10.21.24315770","title":"Cost-effectiveness analysis of 21-valent pneumococcal conjugated vaccine among adults in Canada","year":2024,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Children's Hospital; University of Toronto; University Health Network; McGill University; University of British Columbia; Public Health Ontario; Public Health Agency of Canada","funders":"","keywords":"Pneumococcal vaccine; Pneumococcal disease; Conjugated system; Medicine; Environmental health; Streptococcus pneumoniae; Biology; Microbiology; Chemistry","score_opus":0.02334140921482049,"score_gpt":0.29880670795588854,"score_spread":0.27546529874106807,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403629428","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958332,0.0003322731,0.00001539586,0.00035016763,0.0011094129,0.0015893714,0.00023598224,0.00006728118,0.00046690297],"genre_scores_gemma":[0.999047,0.00010248782,0.0000027584697,0.00008037347,0.000078322475,0.00039284484,0.00017869192,0.000044860844,0.0000726913],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99734855,0.00028318094,0.00083560665,0.0007224405,0.00044398982,0.00036622386],"domain_scores_gemma":[0.99827063,0.0002434794,0.00024494957,0.00072182197,0.00026054893,0.00025858392],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00047077084,0.0003991147,0.0014993952,0.0011620858,0.00003495222,0.000014256801,0.00018505497,0.00030389047,0.00013219712],"category_scores_gemma":[0.00019195763,0.00033476076,0.0004508677,0.0017380348,0.000059601996,0.000020277652,0.00035647294,0.001298016,0.000009471041],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015064767,0.0001862303,0.9796037,0.0016450246,0.002556819,0.0005817067,0.00014305687,0.006316629,0.008316545,0.000010511499,0.000036209876,0.00045290406],"study_design_scores_gemma":[0.00095417013,0.00008749249,0.9819139,0.0017023853,0.0033220283,0.000010179469,0.00008375532,0.0077316216,0.0035146042,0.000022434851,0.00038795147,0.00026947906],"about_ca_topic_score_codex":0.6442109,"about_ca_topic_score_gemma":0.9047363,"teacher_disagreement_score":0.2605254,"about_ca_system_score_codex":0.0011439516,"about_ca_system_score_gemma":0.0022118534,"threshold_uncertainty_score":0.9999104},"labels":[],"label_agreement":null},{"id":"W4404067958","doi":"10.1128/spectrum.03643-23","title":"Evaluating methods for identifying and quantifying <i>Streptococcus pneumoniae</i> co-colonization using next-generation sequencing data","year":2024,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"European and Developing Countries Clinical Trials Partnership; Medical Research Council; Sanofi Pasteur; Norges Forskningsråd; Ministry of Education, Culture, Sports, Science and Technology; National Institute for Health and Care Research; Pfizer; Department for International Development; UK Research and Innovation; Government of the United Kingdom; Wellcome Trust; GlaxoSmithKline; Sanofi; European Commission; Bill and Melinda Gates Foundation","keywords":"Serotype; Biology; Streptococcus pneumoniae; Single-nucleotide polymorphism; DNA sequencing; Carriage; Genetics; Microbiology; Gene; Genotype; Medicine; Bacteria","score_opus":0.49537995843369304,"score_gpt":0.5160549753491468,"score_spread":0.02067501691545376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404067958","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.830893,0.0023576315,0.16317667,0.0010391271,0.0012158209,0.0009674564,0.000090333975,0.00021834868,0.000041596853],"genre_scores_gemma":[0.96160126,0.00011348132,0.035572287,0.00059147016,0.00085907825,0.00005823022,0.0010376475,0.00007128307,0.00009529204],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9982305,0.00023154015,0.00041846462,0.00071199995,0.000047620088,0.00035988694],"domain_scores_gemma":[0.9991141,0.00023787627,0.00010590515,0.0004086855,0.00006252341,0.00007091757],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013247953,0.00020867732,0.00032434464,0.00025739576,0.0004857718,0.00018441273,0.000112876856,0.00020542784,0.000029748608],"category_scores_gemma":[0.00023830881,0.00019066462,0.000073548734,0.00029166267,0.00011318294,0.00033823017,0.00011195661,0.00027644882,0.000010978942],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000007444832,0.000014033379,0.0021620393,0.00023089525,0.000115482275,0.000011058673,0.00022110496,0.00009532846,0.990015,0.00014123043,0.00011077483,0.0068756356],"study_design_scores_gemma":[0.0008067116,0.00039724715,0.00032979713,0.00041498,0.00070672185,0.0016931999,0.00025642788,0.5181554,0.46262988,0.00023681331,0.013968298,0.00040452255],"about_ca_topic_score_codex":0.000028968007,"about_ca_topic_score_gemma":0.000054613207,"teacher_disagreement_score":0.5273851,"about_ca_system_score_codex":0.00024131102,"about_ca_system_score_gemma":0.00031726307,"threshold_uncertainty_score":0.7775078},"labels":[],"label_agreement":null},{"id":"W4404352092","doi":"10.1016/j.jaci.2024.11.008","title":"Early-life upper airway microbiota are associated with decreased lower respiratory tract infections","year":2024,"lang":"en","type":"article","venue":"Journal of Allergy and Clinical Immunology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Oklahoma State University; University of Minnesota; University of Wisconsin-Madison","keywords":"Airway; Respiratory tract; Respiratory tract infections; Medicine; Respiratory system; Immunology; Internal medicine; Anesthesia","score_opus":0.024207486020521633,"score_gpt":0.31545878086915813,"score_spread":0.2912512948486365,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404352092","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99205345,0.0029493058,0.000055463795,0.0030850822,0.0011591162,0.000086580745,0.0000049697173,0.000048668808,0.0005573561],"genre_scores_gemma":[0.9959415,0.0012336036,0.000013743576,0.0019872363,0.00036125287,0.0000028298014,0.000001837626,0.000025560083,0.0004324261],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983759,0.0002590492,0.0008075184,0.00020348626,0.0001255944,0.00022848308],"domain_scores_gemma":[0.9983412,0.00064133166,0.00032136423,0.0001713929,0.00027797782,0.00024670552],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005155274,0.00016819034,0.0005405374,0.00024702406,0.00014192518,0.00003895115,0.00007512737,0.00044107164,0.00025432915],"category_scores_gemma":[0.00088016083,0.00011113512,0.0003290259,0.00024677019,0.00039112585,0.00014250776,0.000027307158,0.0013284902,0.000038793652],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0031975892,0.015339859,0.85685617,0.000067480665,0.034401566,0.0048402497,0.00032573054,0.000031279826,0.0630654,0.00081969425,0.01203041,0.009024574],"study_design_scores_gemma":[0.0024750878,0.0071839886,0.89616907,0.00050610857,0.00040235315,0.00075949426,0.00006711402,0.000006154043,0.000059046233,0.00004175559,0.092196316,0.00013352284],"about_ca_topic_score_codex":0.0000069489424,"about_ca_topic_score_gemma":0.0000425362,"teacher_disagreement_score":0.0801659,"about_ca_system_score_codex":0.00005796248,"about_ca_system_score_gemma":0.00054290413,"threshold_uncertainty_score":0.5771703},"labels":[],"label_agreement":null},{"id":"W4404671360","doi":"10.1186/s41479-024-00143-x","title":"Community versus academic hospital community-acquired pneumonia patients: a nested cohort study","year":2024,"lang":"en","type":"article","venue":"Pneumonia","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Surrey Memorial Hospital; St. Michael's Hospital; Kingston General Hospital; Queen's University; Sunnybrook Health Science Centre; Université de Sherbrooke; Foothills Medical Centre; University of Toronto; Memorial University of Newfoundland; University of Calgary; Health Sciences Centre; McMaster University; Lions Gate Hospital; Vancouver General Hospital; Mount Sinai Hospital; University of British Columbia Hospital; Institut universitaire de cardiologie et de pneumologie de Québec; University of Ottawa; McGill University Health Centre; William Osler Health System; University of British Columbia; Université Laval; Niagara Health System; Brock University; Humber River Regional Hospital; St. Paul's Hospital","funders":"Canadian Institutes of Health Research; St. Paul's Foundation","keywords":"Medicine; Community-acquired pneumonia; Pneumonia; Internal medicine; Cohort; Community hospital; Cohort study; Logistic regression; Statistical significance","score_opus":0.032669494156637245,"score_gpt":0.3268093860364232,"score_spread":0.29413989187978595,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404671360","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9889096,0.00016608104,0.000010253693,0.0016492568,0.002941168,0.0022628324,0.000066706525,0.0011575411,0.0028365597],"genre_scores_gemma":[0.9979423,0.00006152842,0.0000085471565,0.00047322141,0.0002515811,0.00036671318,0.00016489506,0.00012327723,0.0006078842],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99607986,0.0013662858,0.0007610704,0.0004456683,0.0006853603,0.00066173554],"domain_scores_gemma":[0.99712056,0.00061033654,0.00013539018,0.0014159479,0.00028580212,0.00043197564],"candidate_categories":["metaepi_narrow","sts","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0011278719,0.0005332956,0.0007315159,0.00042821042,0.0013724843,0.0001451584,0.0005323116,0.00035087168,0.000083060164],"category_scores_gemma":[0.0005172865,0.00047262356,0.00028912647,0.0010981583,0.00030179162,0.00038581114,0.0003976224,0.0035364989,0.0006195914],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016280888,0.003915024,0.96711695,0.00022500358,0.00074593315,0.00013679352,0.0068794237,0.0000067611286,0.017403413,0.00004991067,0.0009089574,0.002449027],"study_design_scores_gemma":[0.0029402734,0.0050559896,0.9729234,0.00026152664,0.0007533398,0.000047149642,0.003275477,0.00015085959,0.00012221085,0.00005166995,0.013931326,0.0004867587],"about_ca_topic_score_codex":0.0008293486,"about_ca_topic_score_gemma":0.00020661668,"teacher_disagreement_score":0.017281203,"about_ca_system_score_codex":0.00045088909,"about_ca_system_score_gemma":0.00023682049,"threshold_uncertainty_score":0.9999276},"labels":[],"label_agreement":null},{"id":"W4405250884","doi":"10.1371/journal.pone.0311201","title":"Accuracy of the diagnosis of pneumonia in Canadian pediatric emergency departments: A prospective cohort study","year":2024,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Western University; University of Toronto; University of Ottawa; Alberta Health; University of Manitoba; Queen's University; Centre Hospitalier Universitaire Sainte-Justine; Alberta Health Services; University of Calgary; University of Alberta","funders":"Institute of Human Development, Child and Youth Health; Alberta Children's Hospital Foundation; Lung Association, Alberta and NWT; Children's Hospital Foundation","keywords":"Pneumonia; Medicine; Prospective cohort study; Cohort study; Emergency medicine; Cohort; Intensive care medicine; Medical emergency; Pediatrics; Internal medicine","score_opus":0.028024815646524658,"score_gpt":0.28552440186923167,"score_spread":0.257499586222707,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405250884","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99569297,0.0005236544,1.207917e-7,0.00050512195,0.00014442723,0.0019045682,0.00004030891,0.000021342594,0.0011674613],"genre_scores_gemma":[0.998731,0.00046615282,0.0000031504496,0.000028607748,0.00007764356,0.00052795885,0.0000019351105,0.000015164488,0.00014836487],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99894214,0.000054879787,0.00032717802,0.00018851014,0.00029769875,0.00018957908],"domain_scores_gemma":[0.99938184,0.00006494014,0.00006532249,0.00026941713,0.00010974285,0.000108759086],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016871102,0.00009661031,0.0002725558,0.0002831554,0.000046771424,0.0000042123343,0.00008489333,0.00004628046,0.0001574723],"category_scores_gemma":[0.00036067425,0.00006735544,0.00007506373,0.00097024924,0.000026272997,0.000055994235,0.000028932116,0.00018877533,0.000017850592],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000048176903,0.0035777555,0.99254006,0.00022519159,0.00036619176,0.00002453528,0.0005756555,0.0000015481451,0.002559674,0.00002322848,0.00006765127,0.00003368652],"study_design_scores_gemma":[0.00024879372,0.00037291434,0.9962354,0.00008629644,0.00074379647,0.0000018711762,0.00009018063,0.000022575441,0.0020190813,0.00003479224,0.000084462234,0.000059882947],"about_ca_topic_score_codex":0.026759312,"about_ca_topic_score_gemma":0.12748584,"teacher_disagreement_score":0.10072653,"about_ca_system_score_codex":0.0001868308,"about_ca_system_score_gemma":0.00047356356,"threshold_uncertainty_score":0.9797216},"labels":[],"label_agreement":null},{"id":"W4405409636","doi":"10.1093/nar/gkae1140","title":"Point mutations in functionally diverse genes are associated with increased natural DNA transformation in multidrug resistant <i>Streptococcus pneumoniae</i>","year":2024,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research; Alliance de recherche numérique du Canada","keywords":"Biology; Transformation (genetics); Streptococcus pneumoniae; Genetics; Gene; DNA; Mutant; Mutagenesis; Genome; Multiple drug resistance; Computational biology; Drug resistance; Bacteria","score_opus":0.03144338406536801,"score_gpt":0.31766929062154275,"score_spread":0.28622590655617475,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405409636","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9930282,0.0001859364,0.000015357402,0.0034645027,0.0001220101,0.0009977345,0.00009534426,0.00015106297,0.0019398232],"genre_scores_gemma":[0.99880475,0.00005163396,0.000015886208,0.00015869463,0.00006608343,0.00023572409,0.00014646184,0.000036541027,0.00048422196],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9974467,0.0003479848,0.00040716602,0.00039789258,0.0008871558,0.00051306194],"domain_scores_gemma":[0.9987609,0.00037634032,0.000042460655,0.0002306794,0.00042133845,0.00016827598],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010402604,0.00018779574,0.00027531554,0.0011508246,0.0002579495,0.00009875304,0.00011225508,0.00016914876,0.0001315428],"category_scores_gemma":[0.00044729435,0.00014700119,0.000096932425,0.0020605952,0.00022834814,0.0003939634,0.00003786832,0.0011850744,0.00010374533],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008405297,0.0014247107,0.34485936,0.00058316556,0.00031860513,0.0030350627,0.005460643,0.00047365096,0.6340527,0.00068642996,0.0012540251,0.00701114],"study_design_scores_gemma":[0.0030667172,0.0004934904,0.9739011,0.0013101009,0.000051916522,0.000058051395,0.004906639,0.008785839,0.0022402527,0.00014219551,0.0047830273,0.0002606815],"about_ca_topic_score_codex":0.00033413287,"about_ca_topic_score_gemma":0.005072298,"teacher_disagreement_score":0.6318124,"about_ca_system_score_codex":0.00083943584,"about_ca_system_score_gemma":0.0005259226,"threshold_uncertainty_score":0.5994535},"labels":[],"label_agreement":null},{"id":"W4405467030","doi":"10.1016/s1473-3099(24)00665-0","title":"Global impact of ten-valent and 13-valent pneumococcal conjugate vaccines on invasive pneumococcal disease in all ages (the PSERENADE project): a global surveillance analysis","year":2024,"lang":"en","type":"article","venue":"The Lancet Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; University Health Network; University of Calgary","funders":"Faculty of Medicine and Health, University of Sydney; National Institute of Allergy and Infectious Diseases; Medical Research Council; KU Leuven; Institute of Environmental Science and Research; University of Hong Kong; University College London; National Institute for Health and Care Research; Novavax; Wellcome Trust; Sanofi Pasteur; Regeneron Pharmaceuticals; Queen Mary University of London; Pfizer Canada; BioFire Diagnostics; Université Laval; Sanofi; University of Bern; World Health Organization; Bill and Melinda Gates Foundation; Pfizer","keywords":"Pneumococcal disease; Medicine; Pneumococcal infections; Pneumococcal conjugate vaccine; Virology; Streptococcus pneumoniae; Conjugate; Immunology; Microbiology; Biology; Antibiotics","score_opus":0.025627880087089622,"score_gpt":0.34761475294988015,"score_spread":0.32198687286279054,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405467030","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9917412,0.002128783,0.000006911681,0.00235331,0.00020618293,0.0011827686,0.0014461192,0.0002650688,0.00066967873],"genre_scores_gemma":[0.99734145,0.0013731269,5.4543534e-7,0.0005298413,0.00040879508,0.00022414733,0.000076705015,0.000022894901,0.000022487335],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99759007,0.0004195586,0.0004925348,0.00056634675,0.0003764564,0.0005550274],"domain_scores_gemma":[0.9983382,0.00046503675,0.00015177602,0.00061283936,0.00011412782,0.0003180174],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029009482,0.00042744703,0.0008665175,0.00022819082,0.00017602117,0.00012133844,0.00021772584,0.00009132914,0.000036984122],"category_scores_gemma":[0.00041353167,0.00022664729,0.00067915744,0.001799307,0.0003079898,0.000110724155,0.00012792941,0.0002959833,0.000017767887],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004947596,0.00058732694,0.990797,0.00038517607,0.001993338,0.00026514285,0.00013891634,0.0034295383,0.00047661675,0.00019645342,0.0005993807,0.00063636986],"study_design_scores_gemma":[0.0012915571,0.00062862,0.9936079,0.00025033893,0.0018738124,0.0000993435,0.000044346267,0.0010419933,0.00001219778,0.0006233989,0.0002791767,0.00024733538],"about_ca_topic_score_codex":0.0015719923,"about_ca_topic_score_gemma":0.0022245666,"teacher_disagreement_score":0.0056002797,"about_ca_system_score_codex":0.00043894202,"about_ca_system_score_gemma":0.00046579028,"threshold_uncertainty_score":0.9242408},"labels":[],"label_agreement":null},{"id":"W4405467039","doi":"10.1016/s1473-3099(24)00588-7","title":"Serotype distribution of remaining invasive pneumococcal disease after extensive use of ten-valent and 13-valent pneumococcal conjugate vaccines (the PSERENADE project): a global surveillance analysis","year":2024,"lang":"en","type":"article","venue":"The Lancet Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; University of Calgary; Alberta Health Services; University Health Network","funders":"National Institute of Allergy and Infectious Diseases; World Health Organization; Bill and Melinda Gates Foundation","keywords":"Pneumococcal disease; Serotype; Pneumococcal conjugate vaccine; Conjugate; Virology; Streptococcus pneumoniae; Medicine; Distribution (mathematics); Disease surveillance; Pneumococcal infections; Disease; Biology; Microbiology; Mathematics; Internal medicine; Antibiotics","score_opus":0.024833582597661427,"score_gpt":0.2969799585463948,"score_spread":0.27214637594873337,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405467039","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929556,0.0019540612,0.000096312804,0.0016252127,0.00020675427,0.0010469763,0.001876336,0.00018169418,0.0000569994],"genre_scores_gemma":[0.99783105,0.001057531,0.0000018223391,0.00036544268,0.0003185389,0.00024059146,0.0001325659,0.000022417411,0.000030036408],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9979711,0.00034902175,0.0005171079,0.00044887332,0.0003376444,0.00037623392],"domain_scores_gemma":[0.998021,0.00059420546,0.00021663279,0.0005735932,0.00038146548,0.00021311412],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002397,0.00031436185,0.0007725553,0.0001397188,0.00019771971,0.00008516137,0.000121935824,0.000079548205,0.000020162546],"category_scores_gemma":[0.00077159127,0.00018022097,0.0004485432,0.0012724369,0.00041089643,0.00016242174,0.00013730195,0.000250351,0.0000066017456],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006280313,0.00025987372,0.99330455,0.0007755553,0.0015246931,0.00013725767,0.00019814969,0.00055016234,0.0016994125,0.00021168665,0.0003331634,0.00037743553],"study_design_scores_gemma":[0.00069903734,0.0002863315,0.9928055,0.00038030007,0.0033869087,0.00009544168,0.00009299466,0.0009084622,0.00011833899,0.00027753745,0.00075316033,0.00019601935],"about_ca_topic_score_codex":0.0002892974,"about_ca_topic_score_gemma":0.0003468748,"teacher_disagreement_score":0.0048754006,"about_ca_system_score_codex":0.00012518368,"about_ca_system_score_gemma":0.0003351216,"threshold_uncertainty_score":0.7349198},"labels":[],"label_agreement":null},{"id":"W4405493079","doi":"10.1093/ofid/ofae727","title":"<i>Streptococcus pneumoniae</i> Serotype Distribution Among US Adults Hospitalized With Community-Acquired Pneumonia, 2019–2020","year":2024,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sunnybrook Hospital; University of Toronto","funders":"National Center for Advancing Translational Sciences; University of Toronto; Sunnybrook Research Institute; National Institutes of Health; Pfizer","keywords":"Medicine; Streptococcus pneumoniae; Serotype; Community-acquired pneumonia; Pneumonia; Microbiology; Virology; Internal medicine; Antibiotics; Biology","score_opus":0.00617969788277393,"score_gpt":0.2608521499088,"score_spread":0.25467245202602606,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405493079","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98400307,0.00036827524,0.0001169565,0.0014727489,0.0007154864,0.0027701557,0.00095619,0.001071171,0.008525933],"genre_scores_gemma":[0.9950697,0.00014898118,0.0000033935096,0.00093688734,0.00015794588,0.00088000874,0.0016401532,0.00011894313,0.0010440232],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99742806,0.00027903836,0.00051310996,0.00064891926,0.00041803575,0.000712853],"domain_scores_gemma":[0.99784416,0.00013587064,0.0001657033,0.0009601231,0.0002628066,0.00063133304],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001902299,0.0005485835,0.00068232516,0.00015430606,0.0011241261,0.0007052014,0.0004011199,0.00021526616,0.00025764588],"category_scores_gemma":[0.000105620304,0.00043252646,0.00033140904,0.0010344215,0.0003975727,0.0009412644,0.0003883329,0.0006072096,0.00036916888],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023970405,0.0011743164,0.9832499,0.00039262822,0.0005038445,0.00040680915,0.00014910023,0.00004964798,0.0019505725,0.00028645355,0.009393575,0.0022034245],"study_design_scores_gemma":[0.003405733,0.0032718258,0.945061,0.0018101237,0.0008948729,0.00034833245,0.00026977307,0.00030786998,0.00042296268,0.00036456456,0.043069713,0.0007732196],"about_ca_topic_score_codex":0.0015361153,"about_ca_topic_score_gemma":0.0007785754,"teacher_disagreement_score":0.038188916,"about_ca_system_score_codex":0.00034100458,"about_ca_system_score_gemma":0.00046752344,"threshold_uncertainty_score":0.99981266},"labels":[],"label_agreement":null},{"id":"W4405622500","doi":"10.1097/qco.0000000000001090","title":"Health inequalities in respiratory tract infections – beyond COVID-19","year":2024,"lang":"en","type":"review","venue":"Current Opinion in Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"NOSM University","funders":"","keywords":"Medicine; Respiratory tract infections; Incidence (geometry); Indigenous; Pneumonia; Environmental health; Population; Immunology; Socioeconomic status; Global health; Bronchiectasis; Public health; Respiratory system; Lung; Biology; Internal medicine","score_opus":0.17310896686573007,"score_gpt":0.4804306682805316,"score_spread":0.30732170141480153,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405622500","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00007399582,0.98223066,0.000029959858,0.00040494555,0.0127105,0.0025610987,0.00086346234,0.00063906395,0.00048629343],"genre_scores_gemma":[0.00059186807,0.9942094,4.620463e-7,0.00057683064,0.0016224715,0.0020442253,0.00076047896,0.00013848081,0.00005578635],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9947604,0.0009826117,0.0019835636,0.0010496723,0.00046370082,0.00076007936],"domain_scores_gemma":[0.99706817,0.00058749365,0.00052349677,0.00071048853,0.0000770904,0.0010332594],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000601073,0.0008956996,0.002714003,0.0038896163,0.0002792664,0.00012909646,0.00017717558,0.0004534946,0.00018263294],"category_scores_gemma":[0.0010694843,0.0007636929,0.0011202284,0.0027091342,0.00024134324,0.00021516757,0.00014292431,0.0019849376,0.00038543937],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013232745,0.009174053,0.0943009,0.32700235,0.00032931176,0.00008207764,0.00052350416,0.00007672952,1.0681828e-7,0.0044754865,0.04748511,0.51653713],"study_design_scores_gemma":[0.0010149839,0.00059524924,0.0022930733,0.033509176,0.0004947436,0.00017243353,0.000050207753,0.000003553972,7.836009e-9,0.0007055092,0.9605567,0.00060439936],"about_ca_topic_score_codex":0.00018450084,"about_ca_topic_score_gemma":0.0001805924,"teacher_disagreement_score":0.9130716,"about_ca_system_score_codex":0.003250605,"about_ca_system_score_gemma":0.008677986,"threshold_uncertainty_score":0.9994814},"labels":[],"label_agreement":null},{"id":"W4405737379","doi":"10.7759/cureus.76315","title":"A Prospective, Observational, Open-Label, Non-comparative, Multi-center Study for the Evaluation of Efficacy and Safety of Levonadifloxacin (Intravenous and Oral) in Patients With Community-Acquired Bacterial Pneumonia","year":2024,"lang":"en","type":"article","venue":"Cureus","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hand and Upper Limb Clinic","funders":"","keywords":"Medicine; Observational study; Moraxella catarrhalis; Community-acquired pneumonia; Streptococcus pneumoniae; Informed consent; Pneumonia; Emergency medicine; Internal medicine; Pediatrics; Alternative medicine; Antibiotics","score_opus":0.17388208227690571,"score_gpt":0.3976658273910108,"score_spread":0.2237837451141051,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405737379","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945631,0.00011163805,0.000055062563,0.00009234347,0.00011348235,0.0049205576,0.00009408248,0.000008542263,0.00004117],"genre_scores_gemma":[0.99950254,0.000011912304,0.00013466651,0.000023740275,0.000016775373,0.0002279921,0.000054489938,0.000012824224,0.000015053875],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990171,0.00020663826,0.00029895894,0.00016850377,0.00020568442,0.00010309426],"domain_scores_gemma":[0.99906105,0.00025601388,0.0000872471,0.00021369428,0.0003443433,0.000037669783],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006799265,0.00012337558,0.0003204323,0.000062860105,0.0001553437,0.000032574124,0.00009055092,0.00004078165,0.000009217414],"category_scores_gemma":[0.000083432664,0.00007748785,0.00001408687,0.00019207226,0.00013464822,0.00014956026,0.00006895328,0.0001230563,3.586595e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002354786,0.011857276,0.9491563,0.00023993057,0.00057498884,0.0000011424498,0.012289814,0.000043952357,0.020997873,0.0000676195,0.000031417134,0.0023849069],"study_design_scores_gemma":[0.024613021,0.0034457005,0.96810526,0.0002454186,0.00028138474,0.0000023654948,0.0005945676,0.0023150737,0.0001335196,0.00001679569,0.00017002363,0.00007688761],"about_ca_topic_score_codex":0.00017550273,"about_ca_topic_score_gemma":0.0008832241,"teacher_disagreement_score":0.022258233,"about_ca_system_score_codex":0.000077884506,"about_ca_system_score_gemma":0.00015148363,"threshold_uncertainty_score":0.31598628},"labels":[],"label_agreement":null},{"id":"W4405746081","doi":"10.1093/jpids/piae132","title":"Increasing Number of Clinically Severe <i>Mycoplasma pneumoniae</i> Infections in Children After the COVID-19 Pandemic: A Single-Center Case Series","year":2024,"lang":"en","type":"article","venue":"Journal of the Pediatric Infectious Diseases Society","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Medical Research Council","keywords":"Medicine; Pandemic; Mycoplasma pneumoniae; Coronavirus disease 2019 (COVID-19); 2019-20 coronavirus outbreak; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Series (stratigraphy); Virology; Pneumonia; Pediatrics; Internal medicine; Outbreak; Infectious disease (medical specialty); Disease","score_opus":0.015275285665991645,"score_gpt":0.3010301056464925,"score_spread":0.2857548199805009,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405746081","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99599963,0.0007076684,0.00005931622,0.0013988627,0.0009794907,0.0004565039,0.00014291362,0.00008289262,0.00017272118],"genre_scores_gemma":[0.9955209,0.0011729882,0.000021475213,0.0019656334,0.0011751212,0.000031400483,0.000002438439,0.00003777385,0.000072283365],"study_design_codex":"observational","study_design_gemma":"case_report","domain_scores_codex":[0.9975705,0.00043810692,0.0010627751,0.00022408184,0.0003986994,0.0003058188],"domain_scores_gemma":[0.99773645,0.0008859786,0.0005058635,0.0003289429,0.00022871458,0.00031403755],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008736462,0.00025321296,0.00044415778,0.0001374709,0.00035810523,0.00009048263,0.00015093261,0.00020616209,0.00008400431],"category_scores_gemma":[0.0010369258,0.00014526534,0.0013453325,0.0011358352,0.000275498,0.0002918903,0.00013985226,0.0010407999,0.000009280961],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001302203,0.00095805916,0.99481034,0.00024732534,0.0004125678,0.0002877888,0.0007297425,0.000252132,0.0001160389,0.000008513229,0.001915979,0.00013127318],"study_design_scores_gemma":[0.0015911355,0.00033191507,0.011010751,0.00010528078,0.0015388704,0.98239124,0.00019661836,0.00002868002,2.8198204e-7,0.0002490121,0.0023881844,0.00016804611],"about_ca_topic_score_codex":0.00010666003,"about_ca_topic_score_gemma":0.000085004256,"teacher_disagreement_score":0.98379964,"about_ca_system_score_codex":0.0005439642,"about_ca_system_score_gemma":0.0012180681,"threshold_uncertainty_score":0.5923748},"labels":[{"model":"gemma","categories":[],"domain":null,"study_design":"case_report","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"low"},{"model":"gpt","categories":[],"domain":null,"study_design":"observational","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"low"}],"label_agreement":"split"},{"id":"W4405746337","doi":"10.1186/s41479-024-00149-5","title":"Mortality reduction with 23-valent pneumococcal polysaccharide vaccine: a systematic review and meta-analysis","year":2024,"lang":"en","type":"review","venue":"Pneumonia","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Observational study; Meta-analysis; Streptococcus pneumoniae; Randomized controlled trial; Pneumonia; Systematic review; Pneumococcal polysaccharide vaccine; Internal medicine; Pneumococcal pneumonia; MEDLINE; Intensive care medicine; Pneumococcal disease; Biology; Microbiology","score_opus":0.08605011781862477,"score_gpt":0.3844609509998719,"score_spread":0.2984108331812471,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405746337","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000018059189,0.9925618,0.000014089469,0.00087541254,0.00014249898,0.0057623396,0.00018603187,0.00023742957,0.00020232481],"genre_scores_gemma":[0.00020072026,0.9936802,0.000014123716,0.000492202,0.00012269369,0.002833505,0.00011115062,0.00013540991,0.0024100419],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9950607,0.0005473988,0.0019717002,0.0012781749,0.00065426953,0.0004877949],"domain_scores_gemma":[0.9967695,0.000100766745,0.0008792778,0.0015993295,0.00020172885,0.0004494131],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008960505,0.0011386732,0.013159781,0.00094007986,0.0001770044,0.00012442685,0.00022629731,0.00038637198,0.00011459249],"category_scores_gemma":[0.000103416096,0.00059849303,0.0046784724,0.0026670415,0.000086999775,0.00012358019,0.00012649111,0.0011345246,0.00032750587],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000001396952,0.000083931496,0.0000052521777,0.7452096,0.2542159,0.00014068009,0.000013245182,3.245432e-7,0.000022116787,0.000027884018,0.00012285837,0.00015681997],"study_design_scores_gemma":[0.00007793409,0.00014520228,0.000026211943,0.05981823,0.9003948,0.0027929277,0.000008528882,0.0000030459462,9.429579e-7,0.000006375749,0.036217827,0.0005079742],"about_ca_topic_score_codex":0.000034308432,"about_ca_topic_score_gemma":0.000024134883,"teacher_disagreement_score":0.68539137,"about_ca_system_score_codex":0.00024037047,"about_ca_system_score_gemma":0.00039273672,"threshold_uncertainty_score":0.99964666},"labels":[],"label_agreement":null},{"id":"W4405748112","doi":"10.1016/j.jval.2024.10.905","title":"EE625 Cost-Effectiveness Analysis of 20-Valent Pneumococcal Conjugate Vaccine (PCV20) to Prevent Pneumococcal Disease in the Greek Pediatric Population","year":2024,"lang":"en","type":"article","venue":"Value in Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"","keywords":"Pneumococcal disease; Pneumococcal conjugate vaccine; Medicine; Pediatrics; Conjugate vaccine; Conjugate; Pneumococcal vaccine; Streptococcus pneumoniae; Immunology; Immunization; Microbiology; Biology; Mathematics; Immune system","score_opus":0.03895033056563186,"score_gpt":0.35852965256530167,"score_spread":0.3195793219996698,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405748112","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99004084,0.00095191825,0.00016059408,0.00537269,0.00038217622,0.002914362,0.000090323134,0.000054276676,0.000032842665],"genre_scores_gemma":[0.9985579,0.00029618366,0.0000112496655,0.00041484108,0.00018321381,0.0004108075,0.00007995935,0.000023501112,0.00002232869],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9968349,0.0010270412,0.00085542793,0.00046874533,0.00040825407,0.0004056385],"domain_scores_gemma":[0.99848926,0.0005783616,0.00012045542,0.0004215601,0.00006159904,0.00032875547],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001898476,0.00021405412,0.0006363628,0.0015158706,0.00008228195,0.000023024606,0.00012609284,0.00008339542,0.000025599262],"category_scores_gemma":[0.00020732205,0.00015438054,0.00026399468,0.0037762239,0.000018985438,0.0000824094,0.00004273469,0.0004112071,0.00001956088],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017421014,0.000901093,0.90470535,0.0017041978,0.00013226135,0.0001624263,0.0006820824,0.08858987,0.0010642996,0.00042740043,0.000029940022,0.0014268702],"study_design_scores_gemma":[0.0005284519,0.00045877136,0.97464013,0.00040789772,0.00056570675,0.000013625686,0.00004261335,0.02235624,0.000015374368,0.00016012456,0.00068074313,0.00013031131],"about_ca_topic_score_codex":0.0025184357,"about_ca_topic_score_gemma":0.00045967769,"teacher_disagreement_score":0.06993479,"about_ca_system_score_codex":0.00052388094,"about_ca_system_score_gemma":0.00044270817,"threshold_uncertainty_score":0.6295456},"labels":[],"label_agreement":null},{"id":"W4405749258","doi":"10.1016/j.jval.2024.10.1244","title":"EPH115 Estimating the Public Health Impact of Pediatric Vaccination Programs on Invasive Pneumococcal Disease in France","year":2024,"lang":"en","type":"article","venue":"Value in Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"","keywords":"Pneumococcal disease; Vaccination; Disease; Medicine; Pneumococcal vaccination; Public health; Environmental health; Pediatrics; Intensive care medicine; Immunology; Streptococcus pneumoniae; Biology; Internal medicine; Pathology; Microbiology","score_opus":0.0644160513302726,"score_gpt":0.37309325657982423,"score_spread":0.3086772052495516,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405749258","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9742361,0.0021028542,0.00010375611,0.02172805,0.0003823783,0.0013212392,0.000013385205,0.000070254486,0.000042008396],"genre_scores_gemma":[0.99860346,0.00036410807,0.000068217145,0.0005114976,0.00028805656,0.00011388841,0.000016602276,0.000021053855,0.000013121405],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99808335,0.0003770374,0.0005887466,0.00026710934,0.00026874267,0.0004149821],"domain_scores_gemma":[0.9988948,0.0003488038,0.00016274326,0.0002452538,0.000048685433,0.00029969952],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012851808,0.0001384894,0.0002891026,0.0005066886,0.000101722086,0.000030234876,0.0000807289,0.000051498213,0.000012687005],"category_scores_gemma":[0.00054526114,0.00009036659,0.00011520935,0.0014521567,0.000025042404,0.00010636605,0.000019706848,0.00049109384,0.000014583148],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017067425,0.00067339255,0.94626087,0.0025093167,0.000017788021,0.0000429786,0.001784346,0.015895195,0.000045569184,0.0006777223,0.00009423657,0.03198153],"study_design_scores_gemma":[0.00047492873,0.0011841665,0.94055724,0.00074848154,0.000007799082,0.000013920491,0.000047668695,0.05631191,0.0000017141623,0.00031794416,0.0002584284,0.00007578185],"about_ca_topic_score_codex":0.0015743825,"about_ca_topic_score_gemma":0.00007626439,"teacher_disagreement_score":0.040416714,"about_ca_system_score_codex":0.0006983119,"about_ca_system_score_gemma":0.0035985594,"threshold_uncertainty_score":0.63836896},"labels":[],"label_agreement":null},{"id":"W4405750982","doi":"10.1016/j.jval.2024.10.3731","title":"RWD174 Investigation of Input Precision in Predicting Serotype-Specific Vaccine Effectiveness for Pneumococcal Conjugate Vaccines From Immunological Predictors in Children","year":2024,"lang":"en","type":"article","venue":"Value in Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Pfizer (Canada)","funders":"","keywords":"Serotype; Pneumococcal conjugate vaccine; Medicine; Conjugate; Virology; Streptococcus pneumoniae; Immunology; Biology; Microbiology; Mathematics; Antibiotics","score_opus":0.029108116590041148,"score_gpt":0.2990956094033729,"score_spread":0.26998749281333173,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405750982","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929666,0.0026807461,0.00019759234,0.00081685197,0.0005173371,0.0026344045,0.0000674481,0.00010487289,0.000014134999],"genre_scores_gemma":[0.9986351,0.0005932566,0.0001324125,0.000066397086,0.00019005389,0.00024236199,0.0001040303,0.000032291053,0.000004063049],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99737483,0.0005551601,0.0010028265,0.0005136563,0.00019526827,0.0003582555],"domain_scores_gemma":[0.9982948,0.0011396761,0.00014172842,0.00024729205,0.00005988189,0.00011664593],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015205542,0.00021362526,0.0006283321,0.00069783663,0.000054663647,0.000017401158,0.00010294649,0.00024854657,0.000013166711],"category_scores_gemma":[0.00037615365,0.00017629717,0.00009213612,0.0009287335,0.00004042782,0.0001497371,0.000050548966,0.0005695658,0.000004844429],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035287513,0.00015949136,0.9518499,0.0005141758,0.00003352702,0.000009092651,0.0006242937,0.0029735663,0.04083546,0.00013215277,0.000009895981,0.002505584],"study_design_scores_gemma":[0.002708785,0.0010497724,0.9788609,0.0037562323,0.000015258679,0.000022672657,0.00005050685,0.009161803,0.0029078918,0.0012100925,0.00013483493,0.00012121791],"about_ca_topic_score_codex":0.0018344519,"about_ca_topic_score_gemma":0.000116726085,"teacher_disagreement_score":0.037927564,"about_ca_system_score_codex":0.00042595383,"about_ca_system_score_gemma":0.0003622698,"threshold_uncertainty_score":0.718919},"labels":[],"label_agreement":null},{"id":"W4406075746","doi":"","title":"Cumulative clinical experience from over a decade of use of levofloxacin in community-acquired pneumonia: critical appraisal and role in therapy","year":2011,"lang":"en","type":"article","venue":"DOAJ (DOAJ: Directory of Open Access Journals)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Levofloxacin; Medicine; Pneumonia; Intensive care medicine; Community-acquired pneumonia; Critical appraisal; Internal medicine; Alternative medicine; Pathology; Antibiotics; Biology","score_opus":0.5161484043342188,"score_gpt":0.6221921598058238,"score_spread":0.10604375547160494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406075746","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963726,0.002395252,0.00005183702,0.000064039545,0.00024287787,0.0003802702,0.000045276873,0.000011321317,0.00043657343],"genre_scores_gemma":[0.996291,0.0031572615,0.00018320195,0.00025359783,0.00004377855,0.000031874497,0.0000037420725,0.000028682893,0.0000068679706],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9963631,0.001173857,0.0014909895,0.00029997295,0.00039654245,0.000275505],"domain_scores_gemma":[0.9954545,0.0030291271,0.0005237384,0.00051090174,0.00023483815,0.00024688893],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0011800629,0.00024538694,0.001189936,0.00068956584,0.000103027305,0.000077177756,0.0006694375,0.00022866293,0.0012023508],"category_scores_gemma":[0.0022277378,0.00020721718,0.00017031396,0.00070427806,0.00081706536,0.0013509,0.00043815075,0.0007734949,0.0000010573455],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00068115693,0.0014831397,0.7285855,0.000031060048,0.00008018548,0.00003240997,0.0051665055,0.000006863885,0.2618352,0.000034835273,0.000056522884,0.0020066563],"study_design_scores_gemma":[0.0018390833,0.0001228075,0.9696658,0.00064746465,0.00003752045,0.000010771818,0.000952835,0.00013627562,0.025036966,0.0009378026,0.00042976553,0.0001828554],"about_ca_topic_score_codex":0.00845027,"about_ca_topic_score_gemma":0.00047734208,"teacher_disagreement_score":0.24108037,"about_ca_system_score_codex":0.000039702016,"about_ca_system_score_gemma":0.0001502129,"threshold_uncertainty_score":0.9997107},"labels":[],"label_agreement":null},{"id":"W4406141918","doi":"10.1371/journal.pgph.0003097","title":"Repeatability of RRate measurements in children during triage in two Ugandan hospitals","year":2025,"lang":"en","type":"article","venue":"PLOS Global Public Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"B.C. Women's Hospital & Health Centre; University of British Columbia","funders":"Biotalent Canada; Grand Challenges Canada; Wellcome Trust","keywords":"Repeatability; Intraclass correlation; Medicine; Respiratory rate; Pneumonia; Triage; Age groups; Respiratory system; Pediatrics; Internal medicine; Emergency medicine; Statistics; Heart rate; Demography; Mathematics; Blood pressure","score_opus":0.04618118807344828,"score_gpt":0.36450120558203314,"score_spread":0.31832001750858485,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406141918","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9862235,0.00020170132,0.0000083326595,0.0075137466,0.000103717706,0.0009897031,0.000037353082,0.00005188688,0.0048700306],"genre_scores_gemma":[0.99893856,0.000036309495,0.000021248625,0.0008922871,0.000028799925,0.000036816986,0.000013894814,0.000005691652,0.00002637979],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978979,0.00028911137,0.0007324401,0.00032420273,0.00030311823,0.000453213],"domain_scores_gemma":[0.99911374,0.000020707177,0.00013640431,0.0004001395,0.00011081187,0.0002181707],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012826095,0.00013255367,0.000509762,0.00026318975,0.00006702642,0.000015060162,0.00010583927,0.000061621475,0.000016248807],"category_scores_gemma":[0.00083447504,0.00011928357,0.00007088492,0.0012308084,0.00005819005,0.000126334,0.00005601884,0.00023094846,0.0000046795685],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030287338,0.0008650258,0.99689406,0.00021182059,0.000054243465,0.0000017975963,0.00008238416,0.000005109743,0.00060052535,0.00014903281,0.00004365914,0.0010620814],"study_design_scores_gemma":[0.0037544419,0.00011549189,0.9951515,0.0002485245,0.000010074161,0.0000065616046,0.000047089605,0.0000138907435,0.00031269187,0.00011720438,0.00015324235,0.00006924771],"about_ca_topic_score_codex":0.0013564945,"about_ca_topic_score_gemma":0.00097243633,"teacher_disagreement_score":0.0127150435,"about_ca_system_score_codex":0.0010476374,"about_ca_system_score_gemma":0.0012942413,"threshold_uncertainty_score":0.48642427},"labels":[],"label_agreement":null},{"id":"W4406169507","doi":"10.15585/mmwr.mm7401a1","title":"Expanded Recommendations for Use of Pneumococcal Conjugate Vaccines Among Adults Aged ≥50 Years: Recommendations of the Advisory Committee on Immunization Practices — United States, 2024","year":2025,"lang":"en","type":"article","venue":"MMWR Morbidity and Mortality Weekly Report","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":117,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Cancer Institute; Centers for Disease Control and Prevention; McMaster University","keywords":"Pneumococcal conjugate vaccine; Medicine; Advisory committee; Vaccination; Immunization; Pneumococcal disease; Pneumococcal polysaccharide vaccine; Pediatrics; Family medicine; Immunology; Streptococcus pneumoniae; Political science","score_opus":0.07209901152082529,"score_gpt":0.35731801047186346,"score_spread":0.2852189989510382,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406169507","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98978263,0.000024468418,0.00038568355,0.007280515,0.0006804894,0.0011920342,0.00026858246,0.000048614645,0.0003369538],"genre_scores_gemma":[0.99533296,0.00039965243,0.00017310015,0.00055728166,0.00004762063,0.00012806775,0.00096354564,0.000017236167,0.0023805508],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99824035,0.00025339646,0.00086128816,0.0002987595,0.00018136734,0.0001648103],"domain_scores_gemma":[0.997227,0.0005255394,0.0010562163,0.0006861079,0.00043112083,0.00007401407],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006411885,0.00017353575,0.00038946062,0.00025264572,0.00028890584,0.000033363736,0.00009880043,0.00014065346,0.0000336602],"category_scores_gemma":[0.001279187,0.00014025779,0.00016088689,0.0005682258,0.00018626713,0.00024633986,0.00008310228,0.0003114857,5.686748e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030092357,0.0013456387,0.9598633,0.0005722591,0.0007099703,0.000016379752,0.0007418853,0.00014742644,0.011478302,0.0004257416,0.022902817,0.001495363],"study_design_scores_gemma":[0.0011853388,0.0002234483,0.9050798,0.00052513543,0.0004811443,0.000031155603,0.00081581704,0.0004933688,0.0026621686,0.00018207479,0.088194825,0.00012575027],"about_ca_topic_score_codex":0.0027549004,"about_ca_topic_score_gemma":0.0013927888,"teacher_disagreement_score":0.06529201,"about_ca_system_score_codex":0.000044177745,"about_ca_system_score_gemma":0.0001939762,"threshold_uncertainty_score":0.5719547},"labels":[],"label_agreement":null},{"id":"W4406300128","doi":"10.1503/cmaj.240085-f","title":"<i>Mycoplasma pneumoniae</i>","year":2025,"lang":"en","type":"article","venue":"Canadian Medical Association Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Mycoplasma pneumoniae; Computer science; Medicine; Pneumonia; Internal medicine","score_opus":0.004488915081216428,"score_gpt":0.2462700148070826,"score_spread":0.24178109972586617,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406300128","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3920727,0.00024740686,0.00021034043,0.39219308,0.0042819907,0.00021588725,0.000017375438,0.000085535845,0.21067569],"genre_scores_gemma":[0.86187494,0.00020348487,0.000031042855,0.12129572,0.0014210093,0.000010391751,0.0000053002896,0.000014944031,0.015143194],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.99843603,0.00007908271,0.00031846817,0.00011240469,0.00067664724,0.0003773448],"domain_scores_gemma":[0.9979944,0.00010065082,0.00008220268,0.00009824498,0.0003354905,0.0013889867],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00072033104,0.000091015485,0.00019598856,0.00031913095,0.00036583294,0.000056641755,0.000097412405,0.000370268,0.0021378556],"category_scores_gemma":[0.0014500159,0.0000787643,0.00012955922,0.0004023666,0.000031039344,0.000061377905,0.000009443036,0.001012181,0.00037252245],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000004478249,0.000051817005,0.56542253,0.000015127535,0.00021460421,0.0007449271,0.000058005902,0.0000023374757,0.0005053565,0.000917887,0.40527394,0.026788974],"study_design_scores_gemma":[0.00078471703,0.00004090869,0.028199464,0.00010176703,0.000052629734,0.0021670337,0.000075596115,0.000064879656,0.00002930202,0.00014726065,0.9682674,0.00006906285],"about_ca_topic_score_codex":0.0003488741,"about_ca_topic_score_gemma":0.008111999,"teacher_disagreement_score":0.56299347,"about_ca_system_score_codex":0.0010528674,"about_ca_system_score_gemma":0.0062577636,"threshold_uncertainty_score":0.9993758},"labels":[],"label_agreement":null},{"id":"W4406386873","doi":"10.1016/j.ymed.2015.05.020","title":"10.1016/j.ymed.2015.05.020","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumonia; Disease; Association (psychology); Intensive care medicine; Internal medicine","score_opus":0.007143671719785811,"score_gpt":0.21345488802526297,"score_spread":0.20631121630547716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406386873","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0038407536,0.00003762075,6.087356e-7,0.0025041504,0.000003652118,0.00021661635,0.000008809844,0.00018850144,0.9931993],"genre_scores_gemma":[0.00077979924,4.0033936e-7,0.000016967204,0.0005108632,0.00030447042,0.000022631799,0.000010438943,0.0000230576,0.99833137],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992696,0.000023699828,0.00014975989,0.00017778041,0.00015240352,0.00022673838],"domain_scores_gemma":[0.99936956,0.000024982915,0.000017507811,0.00028174667,0.00004385463,0.00026236166],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00007021642,0.00011672339,0.00018184229,0.000087077715,0.00008896538,0.000014305245,0.000067547975,0.000075092896,0.9973888],"category_scores_gemma":[0.000033496006,0.00009741689,0.0000809343,0.000215417,0.000037369027,0.000043509463,0.0000159194,0.00014093766,0.9964767],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005742661,0.00013165484,0.0000027667088,0.00001067404,0.000039066035,0.000039153398,0.000019190775,0.000017478382,0.002545952,6.499821e-7,0.62081885,0.3763171],"study_design_scores_gemma":[0.0004234676,0.00040462322,0.00027312024,0.000029385395,0.000053914853,0.00010424958,9.037572e-7,0.000037361253,0.00029827323,0.0000021338565,0.99825597,0.00011657991],"about_ca_topic_score_codex":0.000009141949,"about_ca_topic_score_gemma":1.722514e-7,"teacher_disagreement_score":0.3774371,"about_ca_system_score_codex":0.000037220787,"about_ca_system_score_gemma":0.000056238077,"threshold_uncertainty_score":0.39725456},"labels":[],"label_agreement":null},{"id":"W4406416437","doi":"10.1016/s0246-0513(05)37320-2","title":"10.1016/s0246-0513(05)37320-2","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Vaccination; Medicine; Virology","score_opus":0.00802084840290394,"score_gpt":0.20846780344424481,"score_spread":0.20044695504134089,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406416437","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0025398224,0.000030884134,6.7483717e-7,0.001627359,0.0000035436537,0.0002269898,0.000008811411,0.000197524,0.99536437],"genre_scores_gemma":[0.00069099525,4.3629268e-7,0.000018650646,0.00044833065,0.00027742298,0.000025236499,0.000009895581,0.00002502688,0.998504],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992296,0.000025502977,0.00016100146,0.00019366242,0.00013928965,0.0002509417],"domain_scores_gemma":[0.9993434,0.000026483254,0.000017587909,0.00030337006,0.000048036774,0.0002611147],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00007846127,0.00012473848,0.00018821371,0.00010348207,0.000102074395,0.00001704914,0.000072672156,0.00008334501,0.9967264],"category_scores_gemma":[0.00003824704,0.00010499054,0.00009008103,0.00024000337,0.00003831788,0.000049025253,0.000017560977,0.00016265981,0.9963396],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052724918,0.00012907467,0.0000023076307,0.000011315488,0.00003591828,0.00003224412,0.000016239284,0.00001993575,0.003385586,3.417661e-7,0.78594613,0.21036816],"study_design_scores_gemma":[0.00042815006,0.00040650807,0.00040277946,0.000033885826,0.000054538534,0.00010166748,0.0000010137762,0.000041469633,0.00028096992,0.0000028966847,0.9981213,0.00012480869],"about_ca_topic_score_codex":0.000011482281,"about_ca_topic_score_gemma":2.0356626e-7,"teacher_disagreement_score":0.21217516,"about_ca_system_score_codex":0.00004505778,"about_ca_system_score_gemma":0.00005998937,"threshold_uncertainty_score":0.428139},"labels":[],"label_agreement":null},{"id":"W4406455151","doi":"10.1016/j.ymed.2015.05.006","title":"10.1016/j.ymed.2015.05.006","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Antibiotics; Community-acquired pneumonia; Pneumonia; Intensive care medicine; Internal medicine; Microbiology","score_opus":0.007007592521515223,"score_gpt":0.2151474354413788,"score_spread":0.20813984291986357,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406455151","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0040138774,0.00004484857,5.915327e-7,0.002016417,0.000003943612,0.00022125561,0.000008385547,0.00018302917,0.9935076],"genre_scores_gemma":[0.0007219772,4.7210602e-7,0.000015779582,0.00039937842,0.0002864143,0.000023734185,0.000010268835,0.000023096229,0.9985189],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.999255,0.000024142922,0.00015349522,0.0001776215,0.0001570078,0.00023271052],"domain_scores_gemma":[0.99937004,0.000025530731,0.000017851647,0.00028889472,0.00004546104,0.00025220207],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00007378053,0.00011808193,0.00018451836,0.00009622778,0.0000896842,0.000014862577,0.000067637484,0.00007978462,0.99522316],"category_scores_gemma":[0.000032171298,0.00009747399,0.0000839982,0.00021616936,0.000037953912,0.000046146957,0.000015796764,0.00014052725,0.99493736],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005427346,0.00013926059,0.0000032494522,0.000011626785,0.00004035348,0.000038954167,0.000015571539,0.000019311454,0.002871071,5.916957e-7,0.59090245,0.40590328],"study_design_scores_gemma":[0.00041489975,0.0003782556,0.0004226454,0.000031039533,0.00005343969,0.000121794736,8.213932e-7,0.000032410586,0.0002966369,0.0000019807494,0.9981293,0.000116738076],"about_ca_topic_score_codex":0.000010699352,"about_ca_topic_score_gemma":1.7568749e-7,"teacher_disagreement_score":0.4072269,"about_ca_system_score_codex":0.000039596456,"about_ca_system_score_gemma":0.00005667,"threshold_uncertainty_score":0.39748737},"labels":[],"label_agreement":null},{"id":"W4406468994","doi":"10.1016/j.yped.2016.08.064","title":"10.1016/j.yped.2016.08.064","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Intensive care medicine; Internal medicine","score_opus":0.006919531820743278,"score_gpt":0.203202377638615,"score_spread":0.19628284581787173,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406468994","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00458,0.000039375183,6.1961697e-7,0.0012239391,0.0000033417748,0.00020443619,0.000007888391,0.00017879244,0.9937616],"genre_scores_gemma":[0.000646242,5.806881e-7,0.000017499631,0.00037410663,0.00028288455,0.000020673131,0.000008025381,0.000022565242,0.9986274],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99929214,0.000022856742,0.00014787313,0.00017463816,0.0001384311,0.00022404548],"domain_scores_gemma":[0.9993975,0.000025265204,0.000017058752,0.0002840351,0.000043783348,0.00023233239],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00007012597,0.00011375137,0.0001747332,0.00009054197,0.00009254532,0.0000142851195,0.00006535129,0.00007550673,0.99664825],"category_scores_gemma":[0.000032349657,0.000093574345,0.00008031324,0.00020211426,0.000034773642,0.00004552083,0.000015479189,0.00013316113,0.99719334],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006958322,0.00016503847,0.000004061558,0.000013439728,0.000045661895,0.000036211404,0.00002073923,0.00001942965,0.0036930956,7.8331135e-7,0.4776082,0.5183238],"study_design_scores_gemma":[0.00040694932,0.00034136797,0.0004143709,0.000036365916,0.00005037489,0.00008119969,8.0429e-7,0.000029278946,0.0002377621,0.0000023343696,0.9982844,0.000114809256],"about_ca_topic_score_codex":0.000008859978,"about_ca_topic_score_gemma":1.2193709e-7,"teacher_disagreement_score":0.5206762,"about_ca_system_score_codex":0.000036512898,"about_ca_system_score_gemma":0.00006703781,"threshold_uncertainty_score":0.38158512},"labels":[],"label_agreement":null},{"id":"W4406473176","doi":"10.1016/s1553-3212(05)71211-5","title":"10.1016/s1553-3212(05)71211-5","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Dexamethasone; Meningitis; Medicine; Meningococcal meningitis; Intensive care medicine; Pediatrics; Internal medicine; Biology; Neisseria meningitidis","score_opus":0.006992938804828447,"score_gpt":0.20198707927411713,"score_spread":0.19499414046928867,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406473176","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.005688302,0.000030060308,7.000925e-7,0.0014493976,0.000003979389,0.00022706579,0.000009015825,0.00020112944,0.99239033],"genre_scores_gemma":[0.00077576726,4.0597905e-7,0.00001963862,0.0004821018,0.0002844084,0.00002588663,0.0000101078185,0.000024425111,0.99837726],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992131,0.000024778436,0.00016291648,0.00019378349,0.00015790555,0.00024754458],"domain_scores_gemma":[0.9993464,0.000025571237,0.000018693523,0.0003070694,0.00004612531,0.00025614502],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00007630274,0.00012668049,0.00019290505,0.00010079702,0.00010355281,0.00001655078,0.00007234235,0.00008209515,0.9967107],"category_scores_gemma":[0.000033584023,0.000106691725,0.00009135619,0.00023643607,0.00003791613,0.000049830625,0.000017155164,0.00015403704,0.9961796],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008443022,0.00019376524,0.0000038513836,0.000015822488,0.0000518355,0.00005879257,0.000026162452,0.000028842664,0.0035970602,9.912549e-7,0.5745071,0.42143133],"study_design_scores_gemma":[0.000493763,0.00041381415,0.0005275267,0.00003117958,0.000056544908,0.00012926165,0.0000010275741,0.000034331675,0.0002756596,0.0000027148385,0.99790716,0.00012704098],"about_ca_topic_score_codex":0.000011882875,"about_ca_topic_score_gemma":2.3316221e-7,"teacher_disagreement_score":0.4234,"about_ca_system_score_codex":0.000045737725,"about_ca_system_score_gemma":0.000059662038,"threshold_uncertainty_score":0.43507624},"labels":[],"label_agreement":null},{"id":"W4406500907","doi":"10.1016/j.ymed.2016.06.001","title":"10.1016/j.ymed.2016.06.001","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Streptococcus pneumoniae; Pneumonia; Antimicrobial; Microbiology; Antibiotic resistance; Internal medicine; Antibiotics; Biology","score_opus":0.007431749857546739,"score_gpt":0.2061601520264298,"score_spread":0.19872840216888304,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406500907","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0039057615,0.000041025894,2.9608108e-7,0.0012396293,0.0000027250906,0.0002137584,0.000010427896,0.00018873741,0.99439764],"genre_scores_gemma":[0.0004733094,6.8421156e-7,0.0000119049055,0.00039752678,0.00028854643,0.000024418308,0.00001811862,0.00002345822,0.998762],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992522,0.000024195922,0.00015467766,0.00017957162,0.00014730892,0.00024203392],"domain_scores_gemma":[0.9993603,0.000027518112,0.000017819126,0.00028949132,0.00004657131,0.00025828637],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00007486811,0.00011847944,0.00018178172,0.00009558142,0.00009522933,0.000014456761,0.00006870063,0.00007912152,0.9977253],"category_scores_gemma":[0.0000320524,0.00009722419,0.00007342743,0.00020225596,0.00003840945,0.00004779914,0.000016029304,0.00014000991,0.9978337],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004073065,0.00017690969,0.0000027557298,0.000010108495,0.00003531433,0.00002836646,0.0000100656425,0.000010451024,0.0025276742,4.82316e-7,0.5939507,0.40320644],"study_design_scores_gemma":[0.0005159194,0.00030942823,0.00039187213,0.000036878973,0.000050407572,0.0000886022,5.73243e-7,0.000026934189,0.00019353963,0.0000020923278,0.9982647,0.00011905804],"about_ca_topic_score_codex":0.000011510695,"about_ca_topic_score_gemma":1.321844e-7,"teacher_disagreement_score":0.40431398,"about_ca_system_score_codex":0.000038864724,"about_ca_system_score_gemma":0.000061722814,"threshold_uncertainty_score":0.39646873},"labels":[],"label_agreement":null},{"id":"W4406512393","doi":"10.1016/j.ymed.2014.05.015","title":"10.1016/j.ymed.2014.05.015","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Mycoplasma pneumoniae; Cluster (spacecraft); Microbiology; Internal medicine; Pneumonia; Biology","score_opus":0.006926694969720028,"score_gpt":0.20528723956519562,"score_spread":0.19836054459547559,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406512393","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0043796585,0.000039230537,6.142741e-7,0.0016496836,0.0000039779284,0.00021028217,0.000008465709,0.00019649908,0.9935116],"genre_scores_gemma":[0.00060805894,5.620713e-7,0.000017519804,0.00046066853,0.00027701713,0.000022950278,0.000009920349,0.000023749983,0.99857956],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992643,0.000024989886,0.00014987873,0.00017902056,0.00015349111,0.00022834777],"domain_scores_gemma":[0.9993623,0.000025829278,0.000017397646,0.00029184963,0.000045201974,0.00025744957],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00007960051,0.00011581518,0.00018048774,0.00009390653,0.000086258886,0.000014286086,0.000067573834,0.00007583794,0.99642926],"category_scores_gemma":[0.000031099196,0.000096521275,0.000080067155,0.00017899969,0.00003705409,0.00004541824,0.000015678457,0.00013850634,0.9966404],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049606675,0.0001172479,0.0000030982328,0.0000097620905,0.000032422686,0.000033772107,0.000015103162,0.00001621448,0.002409174,5.574781e-7,0.65484744,0.34246558],"study_design_scores_gemma":[0.00041446058,0.00039653337,0.00041654267,0.000027414435,0.000050512048,0.00011529362,8.9986736e-7,0.00003022922,0.0002773831,0.0000023895843,0.998153,0.00011538045],"about_ca_topic_score_codex":0.000010403603,"about_ca_topic_score_gemma":1.7991158e-7,"teacher_disagreement_score":0.3433055,"about_ca_system_score_codex":0.00003928818,"about_ca_system_score_gemma":0.00005765887,"threshold_uncertainty_score":0.39360234},"labels":[],"label_agreement":null},{"id":"W4406522003","doi":"10.1016/j.yccm.2013.02.027","title":"10.1016/j.yccm.2013.02.027","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Emergency department; Pneumonia; Intensive care medicine; Emergency medicine; Medical emergency; Internal medicine; Psychiatry","score_opus":0.006955601521001988,"score_gpt":0.20051142565216304,"score_spread":0.19355582413116104,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406522003","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.006003768,0.000039503542,5.515888e-7,0.0021411472,0.000003444005,0.00022212777,0.000007946627,0.00018839762,0.9913931],"genre_scores_gemma":[0.00083701964,6.896474e-7,0.000018661205,0.00040346477,0.0002690284,0.000023015891,0.000008780027,0.00002324492,0.99841607],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992643,0.000023847493,0.00015248479,0.00018051076,0.00014660624,0.0002322326],"domain_scores_gemma":[0.99937636,0.000023986971,0.00001747545,0.00029309347,0.000045475208,0.00024362405],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00007097821,0.00011847541,0.00018106568,0.00009281898,0.000096018324,0.000015133098,0.00006879881,0.000078226214,0.99669117],"category_scores_gemma":[0.000026278089,0.000099087956,0.00008393917,0.00021293847,0.000036854577,0.000048519076,0.000016215745,0.0001422707,0.9966002],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059545964,0.00015578805,0.0000039708566,0.000012653197,0.000044046774,0.0000328253,0.000020032645,0.000031157073,0.0024538236,6.819038e-7,0.49658933,0.50059617],"study_design_scores_gemma":[0.00040760415,0.00036171204,0.0004949224,0.000029296096,0.000052193936,0.000088893226,8.6336985e-7,0.000046356814,0.00023391875,0.00000249168,0.9981625,0.00011924508],"about_ca_topic_score_codex":0.000017306696,"about_ca_topic_score_gemma":3.014474e-7,"teacher_disagreement_score":0.50157315,"about_ca_system_score_codex":0.000037569374,"about_ca_system_score_gemma":0.000050109426,"threshold_uncertainty_score":0.40406895},"labels":[],"label_agreement":null},{"id":"W4406537638","doi":"10.1016/s1166-8598(14)56442-3","title":"10.1016/s1166-8598(14)56442-3","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine","score_opus":0.006691234818671065,"score_gpt":0.20042232348216726,"score_spread":0.1937310886634962,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406537638","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004804467,0.000033228454,6.481711e-7,0.0013899095,0.000003777911,0.00023310739,0.0000087596845,0.0002047246,0.99332136],"genre_scores_gemma":[0.000768173,4.0427344e-7,0.000020081627,0.00040861662,0.0002926955,0.000027267637,0.000009724485,0.000024975034,0.9984481],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992093,0.000025447027,0.00016333915,0.00019446254,0.00016254156,0.0002449224],"domain_scores_gemma":[0.9993416,0.000026049183,0.000018401954,0.00030646307,0.00005310903,0.00025436643],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00007721057,0.0001265425,0.00019252098,0.00010045279,0.00010466803,0.000016009504,0.00007239342,0.00008523235,0.99647224],"category_scores_gemma":[0.00003709308,0.00010689442,0.00009118491,0.00024044729,0.000037985694,0.000048480102,0.00001705237,0.00015924069,0.9961384],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009004971,0.00020224432,0.0000054825646,0.000017066523,0.00005407152,0.000049504284,0.00002503718,0.000035347217,0.0031793003,0.000001013637,0.53982335,0.45651755],"study_design_scores_gemma":[0.00045380153,0.0003696952,0.00062721217,0.000032058317,0.00005474246,0.00009808261,8.954952e-7,0.00003809775,0.00023733592,0.0000026205116,0.9979579,0.00012759362],"about_ca_topic_score_codex":0.0000073981396,"about_ca_topic_score_gemma":2.480457e-7,"teacher_disagreement_score":0.45813453,"about_ca_system_score_codex":0.000042375956,"about_ca_system_score_gemma":0.000059755264,"threshold_uncertainty_score":0.43590277},"labels":[],"label_agreement":null},{"id":"W4406555453","doi":"10.1016/s1637-5017(19)30368-0","title":"10.1016/s1637-5017(19)30368-0","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine","score_opus":0.008103313669903437,"score_gpt":0.208573566591379,"score_spread":0.20047025292147555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406555453","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004293269,0.000035557627,6.297939e-7,0.001776212,0.0000032431196,0.0002353356,0.00000967827,0.00021592452,0.99343014],"genre_scores_gemma":[0.00066270237,4.7204298e-7,0.000020183934,0.0005620564,0.00027085977,0.000027421362,0.000010709521,0.00002445156,0.99842113],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992041,0.000026536476,0.00016369349,0.0001982644,0.00016078875,0.000246622],"domain_scores_gemma":[0.99926794,0.000028840956,0.000019114615,0.0003160124,0.000044447806,0.00032362866],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00008403002,0.00012696428,0.00019287856,0.00010628411,0.00011706185,0.000017848157,0.00007591086,0.00008192766,0.99704385],"category_scores_gemma":[0.000049668615,0.000107485685,0.0000910957,0.00024162406,0.000040617466,0.00004930141,0.000017777886,0.00015196289,0.99637234],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000888163,0.00019402675,0.00000631096,0.000018488521,0.000053395524,0.000056713652,0.000025791096,0.00003238664,0.0034442134,0.0000010202681,0.58189815,0.41418067],"study_design_scores_gemma":[0.00046035895,0.000362833,0.0004500448,0.000027962275,0.000055967044,0.00011447568,0.000001033797,0.000038344922,0.00016057638,0.0000032265316,0.9981968,0.00012839847],"about_ca_topic_score_codex":0.0000140809525,"about_ca_topic_score_gemma":1.8751925e-7,"teacher_disagreement_score":0.4162986,"about_ca_system_score_codex":0.00004925556,"about_ca_system_score_gemma":0.00007140527,"threshold_uncertainty_score":0.4383139},"labels":[],"label_agreement":null},{"id":"W4406564768","doi":"10.1016/j.ypdi.2015.12.017","title":"10.1016/j.ypdi.2015.12.017","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumococcal conjugate vaccine; Pneumococcal disease; Conjugate vaccine; Pediatrics; Conjugate; Virology; Intensive care medicine; Streptococcus pneumoniae; Immunology; Microbiology; Immunization; Antigen","score_opus":0.008024902182018451,"score_gpt":0.21450834694928003,"score_spread":0.20648344476726158,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406564768","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0030644862,0.00003235036,6.474154e-7,0.0015045542,0.0000033325775,0.00021115791,0.0000080680475,0.00018271193,0.9949927],"genre_scores_gemma":[0.00068451103,4.2775122e-7,0.00002092291,0.00034456752,0.00027207163,0.00002154909,0.0000087881235,0.000022314936,0.99862486],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99928635,0.000022777896,0.00014650251,0.00017516909,0.00014466644,0.000224515],"domain_scores_gemma":[0.9993794,0.000019017922,0.000018151726,0.00030539258,0.000038654984,0.00023936022],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000072351744,0.000114995826,0.00017910708,0.00008973883,0.00010141601,0.000015811447,0.00007020975,0.00007671097,0.99546045],"category_scores_gemma":[0.000033254866,0.000096546835,0.00008125497,0.00014599465,0.000037097976,0.000048297217,0.000015879972,0.00013764668,0.99521494],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007906102,0.00017666658,0.000007118688,0.000013751796,0.000050008042,0.000042432086,0.000024005243,0.00002253394,0.0027109438,8.825694e-7,0.5755066,0.42136595],"study_design_scores_gemma":[0.0004224967,0.00037255307,0.00070954853,0.000029087416,0.000052902033,0.000089482885,8.46092e-7,0.00004268263,0.00018476445,0.0000021474405,0.99797714,0.00011636436],"about_ca_topic_score_codex":0.000009975364,"about_ca_topic_score_gemma":2.751924e-7,"teacher_disagreement_score":0.42247048,"about_ca_system_score_codex":0.000036886348,"about_ca_system_score_gemma":0.000054493798,"threshold_uncertainty_score":0.39370656},"labels":[],"label_agreement":null},{"id":"W4406564822","doi":"10.1016/j.ypdi.2015.01.044","title":"10.1016/j.ypdi.2015.01.044","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumonia; Prospective cohort study; Community-acquired pneumonia; Cohort; Cohort study; Population; Intensive care medicine; Pediatrics; Internal medicine; Environmental health","score_opus":0.007315387602277583,"score_gpt":0.21421125399521068,"score_spread":0.2068958663929331,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406564822","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0040011983,0.000040586558,6.8021e-7,0.001700315,0.0000036198346,0.00019471398,0.000008013937,0.00019082641,0.99386007],"genre_scores_gemma":[0.00087643706,4.2026798e-7,0.000019832383,0.0003801996,0.00027032517,0.000020542278,0.000009452583,0.000023174414,0.9983996],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99927753,0.000023543056,0.00015004458,0.0001755916,0.00014679244,0.0002264893],"domain_scores_gemma":[0.9993947,0.000019759125,0.000017199241,0.00028848875,0.000038120696,0.00024174158],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00007116577,0.00011561338,0.0001787076,0.000091711874,0.00009225845,0.000014923916,0.00006656698,0.00007605046,0.99630004],"category_scores_gemma":[0.00002930287,0.00009689781,0.00008041499,0.00021566202,0.000035752597,0.00004876892,0.0000158005,0.00013950649,0.9957564],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000079996076,0.00020021969,0.0000046029913,0.000013745886,0.000052162297,0.000040956525,0.000023854815,0.000028475612,0.0029025122,0.0000011676998,0.58409476,0.4125575],"study_design_scores_gemma":[0.00042002546,0.00037684685,0.0005360295,0.00002764556,0.000052644056,0.00008903059,9.1357504e-7,0.000042227206,0.00020885486,0.0000023471666,0.9981267,0.00011676198],"about_ca_topic_score_codex":0.000010008499,"about_ca_topic_score_gemma":1.9883947e-7,"teacher_disagreement_score":0.4140319,"about_ca_system_score_codex":0.00003778508,"about_ca_system_score_gemma":0.000053526404,"threshold_uncertainty_score":0.39513782},"labels":[],"label_agreement":null},{"id":"W4406565073","doi":"10.1016/j.ypdi.2013.01.057","title":"10.1016/j.ypdi.2013.01.057","year":2000,"lang":"en","type":"review","venue":"Time to knit","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Meta-analysis; Community-acquired pneumonia; Pneumonia; Intensive care medicine; Internal medicine","score_opus":0.02487972342257666,"score_gpt":0.2694729972517202,"score_spread":0.24459327382914353,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406565073","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[2.2730973e-8,0.4810617,9.6937505e-8,0.00009336559,0.0000051259885,0.00055114663,0.00003587368,0.00013399599,0.5181187],"genre_scores_gemma":[1.1815932e-9,0.32982618,0.000006009167,0.00005965502,0.00050793483,0.00011350944,0.00008647059,0.00007337832,0.66932684],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982773,0.00010140144,0.00052855257,0.00043887287,0.00025369402,0.0004002012],"domain_scores_gemma":[0.99860895,0.000087799854,0.00012598993,0.00070821785,0.000054973694,0.00041409137],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00013144178,0.0004639197,0.0016057154,0.00040066725,0.00011755069,0.000032166805,0.00020434686,0.00042903214,0.9906375],"category_scores_gemma":[0.0000581963,0.00034970875,0.00064240675,0.0005087066,0.000056306046,0.00004342545,0.00006132777,0.00057458575,0.99771965],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000005240489,0.00007362441,4.2839794e-9,0.0015340257,0.00012156133,0.000035961897,0.0000016406539,3.150531e-7,3.3858495e-7,1.4184612e-7,0.25381374,0.7444134],"study_design_scores_gemma":[0.00018272334,0.00030863323,3.3270877e-7,0.005151847,0.001307924,0.00027015014,1.5594973e-7,9.0647114e-7,1.8767794e-7,4.9901456e-7,0.9924232,0.000353454],"about_ca_topic_score_codex":0.000008901655,"about_ca_topic_score_gemma":1.6242237e-7,"teacher_disagreement_score":0.74406,"about_ca_system_score_codex":0.00013529079,"about_ca_system_score_gemma":0.00037090035,"threshold_uncertainty_score":0.9998955},"labels":[],"label_agreement":null},{"id":"W4406565089","doi":"10.1016/j.ypdi.2015.01.007","title":"10.1016/j.ypdi.2015.01.007","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Bacteremia; Pneumonia; Test (biology); Intensive care medicine; Community-acquired pneumonia; Internal medicine; Microbiology; Antibiotics","score_opus":0.0072857136877485795,"score_gpt":0.21631307026571495,"score_spread":0.20902735657796637,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406565089","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0039442074,0.000042292275,7.6437726e-7,0.0015725861,0.0000033690987,0.00021105533,0.000007721987,0.00018914838,0.99402887],"genre_scores_gemma":[0.0006829283,4.0373214e-7,0.000022976343,0.00039750276,0.00027386937,0.000020105232,0.000009053679,0.000022835056,0.9985703],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99927384,0.000022955677,0.00015115831,0.00017436926,0.00014848438,0.0002291742],"domain_scores_gemma":[0.99939024,0.00002075966,0.000017238137,0.0002864854,0.000039760886,0.00024553723],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00007878709,0.00011483404,0.00017643806,0.00009332652,0.0000906464,0.000013722219,0.000066017485,0.0000774572,0.9963133],"category_scores_gemma":[0.000032625907,0.00009638738,0.00007977084,0.00021738128,0.00003599799,0.000047924128,0.000015515796,0.00014079324,0.9959046],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008831776,0.00019624419,0.000006774591,0.000014360299,0.000052731768,0.00004384904,0.000021155829,0.000021545437,0.0029773628,0.0000011847229,0.5842421,0.41233435],"study_design_scores_gemma":[0.00041481995,0.00036533587,0.0006566674,0.000027618604,0.000051067134,0.00008924909,9.31278e-7,0.000038045215,0.00022231514,0.0000022166637,0.99801564,0.0001160758],"about_ca_topic_score_codex":0.000011133215,"about_ca_topic_score_gemma":1.9555875e-7,"teacher_disagreement_score":0.41377354,"about_ca_system_score_codex":0.000037802605,"about_ca_system_score_gemma":0.00005278719,"threshold_uncertainty_score":0.39305633},"labels":[],"label_agreement":null},{"id":"W4406565148","doi":"10.1016/j.ypdi.2014.01.032","title":"10.1016/j.ypdi.2014.01.032","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumonia; Drug; Community-acquired pneumonia; Intensive care medicine; Health care; Multi drug resistant; Drug resistance; Internal medicine; Microbiology; Pharmacology","score_opus":0.006699094255948067,"score_gpt":0.20307782489706866,"score_spread":0.1963787306411206,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406565148","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.003629629,0.000044672182,8.4248154e-7,0.0015551291,0.0000032351954,0.00020776139,0.000008125264,0.00020367946,0.9943469],"genre_scores_gemma":[0.0005987514,6.0297634e-7,0.000018284756,0.0003817337,0.0002696799,0.000021565322,0.000009258169,0.000024218712,0.9986759],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992867,0.000024023579,0.00014993688,0.00017968369,0.00013429539,0.00022537378],"domain_scores_gemma":[0.9993944,0.000024646286,0.000017412716,0.00029268075,0.000037740672,0.0002330902],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000073433745,0.00011542425,0.00017809897,0.00009068349,0.000090655005,0.000014940379,0.00006677561,0.00007654629,0.99693054],"category_scores_gemma":[0.000028479006,0.00009655331,0.00008278128,0.0001762035,0.000035607296,0.000046740093,0.000015574991,0.00013861473,0.9970195],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000065370026,0.0001513822,0.0000059268077,0.000012259941,0.000040783056,0.00003040682,0.000015906438,0.000020778187,0.0031002958,7.354515e-7,0.6097221,0.38683408],"study_design_scores_gemma":[0.00040076632,0.00035438623,0.0005963445,0.000025285379,0.000050485633,0.000082543935,6.732851e-7,0.00003406335,0.00023055848,0.0000026432417,0.9981061,0.0001161325],"about_ca_topic_score_codex":0.000015230532,"about_ca_topic_score_gemma":2.2419856e-7,"teacher_disagreement_score":0.38838404,"about_ca_system_score_codex":0.00003601729,"about_ca_system_score_gemma":0.000050956132,"threshold_uncertainty_score":0.39373296},"labels":[],"label_agreement":null},{"id":"W4406565170","doi":"10.1016/j.ypdi.2014.01.016","title":"10.1016/j.ypdi.2014.01.016","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"ABX test; Medicine; Antibiotics; Intensive care medicine; Clinical decision support system; Medical emergency; Decision support system; Data mining; Microbiology","score_opus":0.006391855996130975,"score_gpt":0.20239497161893202,"score_spread":0.19600311562280104,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406565170","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0031481066,0.00003932137,7.728194e-7,0.0021013427,0.0000032790797,0.000210528,0.000008730735,0.00021388459,0.994274],"genre_scores_gemma":[0.0006734631,5.562936e-7,0.000017971715,0.00038757292,0.00025762242,0.00002231768,0.000008731417,0.000025294272,0.99860644],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992644,0.000024603214,0.00015195538,0.00018507525,0.00014368203,0.00023024667],"domain_scores_gemma":[0.99938273,0.00002631738,0.000017735207,0.00029883464,0.000037484835,0.00023688897],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00007418537,0.00011747949,0.00017998517,0.00009237915,0.00009034155,0.00001472936,0.00006766676,0.00007732667,0.99708116],"category_scores_gemma":[0.000029054947,0.000096043535,0.00008450609,0.000172656,0.00003698545,0.00004797628,0.000015830465,0.0001345598,0.9967594],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000065242966,0.00014141492,0.0000044216654,0.000011460203,0.000039115996,0.000028688864,0.000014388528,0.000015679769,0.0031597286,0.0000011025871,0.6401019,0.35641685],"study_design_scores_gemma":[0.00042653832,0.00035575803,0.0005128864,0.000024016666,0.00004970369,0.00008289847,8.116887e-7,0.000029009283,0.00022799667,0.0000027034773,0.9981695,0.000118208074],"about_ca_topic_score_codex":0.000009919516,"about_ca_topic_score_gemma":1.845333e-7,"teacher_disagreement_score":0.35806757,"about_ca_system_score_codex":0.000038175167,"about_ca_system_score_gemma":0.000054464264,"threshold_uncertainty_score":0.39165416},"labels":[],"label_agreement":null},{"id":"W4406565171","doi":"10.1016/j.ypdi.2014.01.043","title":"10.1016/j.ypdi.2014.01.043","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumococcal vaccination; Pneumococcal pneumonia; Pneumonia; Vaccination; Intensive care medicine; Streptococcus pneumoniae; Pediatrics; Immunology; Internal medicine; Microbiology; Antibiotics","score_opus":0.006566690891910728,"score_gpt":0.20307746110248318,"score_spread":0.19651077021057245,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406565171","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0036551764,0.000044793844,7.054071e-7,0.0014736833,0.0000032819667,0.0002062312,0.000008112539,0.00020601969,0.994402],"genre_scores_gemma":[0.0006829802,6.096325e-7,0.000018001985,0.00040447054,0.0002729034,0.000022022423,0.000009439628,0.000024597604,0.99856496],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992698,0.000024376543,0.0001515909,0.00018184942,0.00014417697,0.00022819676],"domain_scores_gemma":[0.9993879,0.00002488615,0.000017661665,0.00029585414,0.000037531023,0.00023614065],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00007357652,0.00011696007,0.00018010187,0.000092305534,0.00009282422,0.000015163267,0.00006761658,0.00007758589,0.996956],"category_scores_gemma":[0.0000284456,0.00009798037,0.000083221785,0.00018078265,0.00003633546,0.000047174915,0.000015784348,0.000140225,0.9969805],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006421168,0.00014692204,0.0000047615745,0.0000118009175,0.000039478542,0.000029670706,0.000015549407,0.000023704473,0.0029505084,8.1761135e-7,0.60061693,0.39609563],"study_design_scores_gemma":[0.0004218292,0.00035868422,0.00055852375,0.00002537454,0.000051024326,0.00008362966,8.3800853e-7,0.00003374351,0.00023353354,0.0000026588984,0.99811244,0.00011773421],"about_ca_topic_score_codex":0.000012698364,"about_ca_topic_score_gemma":2.0352023e-7,"teacher_disagreement_score":0.39749548,"about_ca_system_score_codex":0.000036491616,"about_ca_system_score_gemma":0.000052357558,"threshold_uncertainty_score":0.39955238},"labels":[],"label_agreement":null},{"id":"W4406582342","doi":"10.1016/s1169-7768(04)35269-0","title":"10.1016/s1169-7768(04)35269-0","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine","score_opus":0.006941882297083286,"score_gpt":0.20142362591700674,"score_spread":0.19448174361992346,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406582342","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0062148115,0.000033702054,6.5625403e-7,0.0014143868,0.0000032508638,0.00023187342,0.000008952119,0.00020235544,0.99189],"genre_scores_gemma":[0.00087731733,4.3947264e-7,0.000019086236,0.00042458044,0.00028111195,0.000025958941,0.000009836826,0.000024542363,0.99833715],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.999205,0.000025647882,0.00016587591,0.00019618211,0.00015928586,0.0002480047],"domain_scores_gemma":[0.99934244,0.000027410062,0.00001858586,0.00030930832,0.000047773898,0.00025449725],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000077820005,0.0001279538,0.00019553865,0.000103160324,0.00010590395,0.000016656631,0.00007364896,0.00008360868,0.9966218],"category_scores_gemma":[0.000035531255,0.000108137865,0.000092459195,0.00024513502,0.000038068978,0.000050162973,0.000017416442,0.00015614803,0.996413],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009441223,0.00021794376,0.0000045309093,0.00001846382,0.000059783906,0.000052428062,0.000027314214,0.00003777267,0.005383982,0.0000012633593,0.45124522,0.5428569],"study_design_scores_gemma":[0.00043780613,0.00036693685,0.0005291874,0.000033057113,0.000057201938,0.00009417257,0.0000010099576,0.000035369492,0.0003671393,0.0000028650688,0.997947,0.0001282696],"about_ca_topic_score_codex":0.000010564357,"about_ca_topic_score_gemma":1.8559867e-7,"teacher_disagreement_score":0.5467017,"about_ca_system_score_codex":0.00004431166,"about_ca_system_score_gemma":0.000059730824,"threshold_uncertainty_score":0.44097343},"labels":[],"label_agreement":null},{"id":"W4406636342","doi":"10.2139/ssrn.5098081","title":"The Epidemiology of Invasive Pneumococcal Disease and Impact of Pneumococcal Conjugate Vaccines in Canada, 2000-2019","year":2025,"lang":"en","type":"preprint","venue":"SSRN Electronic Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Children's Hospital; Université Laval; University of Alberta; Public Health Agency of Canada; University of British Columbia","funders":"","keywords":"Pneumococcal disease; Epidemiology; Medicine; Pneumococcal conjugate vaccine; Pneumococcal infections; Conjugate; Virology; Streptococcus pneumoniae; Intensive care medicine; Microbiology; Biology; Internal medicine; Antibiotics; Mathematics","score_opus":0.012751006303260428,"score_gpt":0.2979956785012376,"score_spread":0.28524467219797717,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406636342","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98123914,0.014555953,0.00003307603,0.0029878074,0.0003626392,0.0005770744,0.00011897765,0.0000070003034,0.00011835606],"genre_scores_gemma":[0.9732736,0.026019488,0.000002428028,0.00009066768,0.00016140948,0.000024683784,0.000015793948,0.000018272885,0.0003936575],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9961191,0.0005534527,0.0011745531,0.00034088377,0.00020408585,0.0016079524],"domain_scores_gemma":[0.9970288,0.0011954022,0.0007784109,0.0004128511,0.00028277547,0.0003017273],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.001796511,0.0003554238,0.0011337833,0.00030930623,0.000140422,0.0000069167004,0.00029460233,0.00022461466,0.000012701119],"category_scores_gemma":[0.0014415636,0.00022496979,0.00041771927,0.00021463278,0.00018411558,0.000040070532,0.00023157362,0.004061663,6.842344e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005408734,0.00010544036,0.98965263,0.00023106513,0.0011565711,0.00003875922,0.000057944813,0.0015012886,0.0031290483,0.0018785882,0.000084046114,0.0016237367],"study_design_scores_gemma":[0.0012341168,0.0005863955,0.96632165,0.0006124412,0.00042209102,0.00047692464,0.00026348062,0.00021326286,0.000078361816,0.029501136,0.00009284197,0.00019727458],"about_ca_topic_score_codex":0.24848792,"about_ca_topic_score_gemma":0.7279485,"teacher_disagreement_score":0.47946054,"about_ca_system_score_codex":0.003409017,"about_ca_system_score_gemma":0.10365366,"threshold_uncertainty_score":0.998236},"labels":[],"label_agreement":null},{"id":"W4406645472","doi":"10.1016/b978-84-8086-959-1.00188-7","title":"10.1016/b978-84-8086-959-1.00188-7","year":2000,"lang":"en","type":"book-chapter","venue":"Time to knit","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Moraxella catarrhalis; Moraxella; Microbiology; Moraxella (Branhamella) catarrhalis; Medicine; Biology; Bacteria; Antibiotics; Streptococcus pneumoniae","score_opus":0.011129632755431737,"score_gpt":0.20163476307981917,"score_spread":0.19050513032438743,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406645472","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000003845016,0.00020106888,5.928781e-7,0.0007216011,0.000013381055,0.0006087878,0.000101902035,0.00032346038,0.99802536],"genre_scores_gemma":[0.0000030473363,0.0000026789805,0.0000141916835,0.00045042217,0.0010337117,0.00003404741,0.00011788187,0.0001481289,0.9981959],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.998293,0.000017515895,0.00042256096,0.0005033777,0.00037929564,0.0003842654],"domain_scores_gemma":[0.9985319,0.000052635718,0.0001071729,0.00072686735,0.00011962617,0.00046179575],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000098823664,0.0004837314,0.0006834657,0.00040369158,0.00015249205,0.000033167973,0.00016993818,0.00055611803,0.9968752],"category_scores_gemma":[0.000029426994,0.00043677783,0.0003496357,0.00007391435,0.000109521985,0.00004725862,0.00006757293,0.0006689423,0.9968023],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001379004,0.00010881717,1.687047e-7,0.00007902792,0.000352197,0.000271707,0.000014818173,0.000009314541,0.0003564464,0.00008519156,0.4810575,0.5175269],"study_design_scores_gemma":[0.00047525912,0.0005880752,0.000010101416,0.00033103686,0.00038889894,0.00023740694,2.4607806e-7,0.0000054614206,0.00002464248,0.000076584154,0.99741006,0.00045220027],"about_ca_topic_score_codex":0.000008680788,"about_ca_topic_score_gemma":4.918009e-7,"teacher_disagreement_score":0.5170747,"about_ca_system_score_codex":0.00014389021,"about_ca_system_score_gemma":0.00021270505,"threshold_uncertainty_score":0.9998084},"labels":[],"label_agreement":null},{"id":"W4406652267","doi":"10.1016/b978-1-4160-2450-7.50062-1","title":"10.1016/b978-1-4160-2450-7.50062-1","year":2000,"lang":"en","type":"book-chapter","venue":"Time to knit","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Sick child; Sick building syndrome; Medicine; Family medicine; Pediatrics; Geography; Meteorology","score_opus":0.010855517650227119,"score_gpt":0.2003775433750813,"score_spread":0.18952202572485416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406652267","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000031210982,0.00018806016,4.7907974e-7,0.00063542253,0.000011154952,0.00058385974,0.000095552125,0.0003124415,0.9981699],"genre_scores_gemma":[0.0000027747128,0.000002181702,0.000012248994,0.0004255102,0.0009143622,0.00003101949,0.00010774147,0.00014460449,0.99835956],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983828,0.000016727727,0.00040080992,0.00047856875,0.00036089588,0.00036022],"domain_scores_gemma":[0.9986056,0.00005231884,0.00010324453,0.00068995694,0.0001136312,0.00043525724],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00009380793,0.00046087723,0.0006576331,0.00039387058,0.00013435462,0.000029593104,0.00016023533,0.000538427,0.9975331],"category_scores_gemma":[0.000027664386,0.00041789925,0.00034454933,0.000068316855,0.000100864796,0.000044773795,0.000063332416,0.00064542354,0.9974806],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010682228,0.00008013927,1.1018341e-7,0.000060857936,0.0002595246,0.00020513564,0.000011188039,0.000007030047,0.00024014895,0.000059654496,0.72786546,0.27110392],"study_design_scores_gemma":[0.00044455728,0.00057795475,0.000009207353,0.00031278006,0.000361888,0.00022917465,2.1955205e-7,0.0000044263193,0.000023723907,0.00008277352,0.99752367,0.00042962885],"about_ca_topic_score_codex":0.0000068671707,"about_ca_topic_score_gemma":3.7918045e-7,"teacher_disagreement_score":0.2706743,"about_ca_system_score_codex":0.0001433143,"about_ca_system_score_gemma":0.00020679072,"threshold_uncertainty_score":0.99982727},"labels":[],"label_agreement":null},{"id":"W4406734295","doi":"10.1016/b978-1-4377-0762-5.00012-7","title":"10.1016/b978-1-4377-0762-5.00012-7","year":2000,"lang":"en","type":"book-chapter","venue":"Time to knit","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Pneumonia; Medicine; Microbiology; Internal medicine; Biology","score_opus":0.011202479313773085,"score_gpt":0.20148546935284756,"score_spread":0.19028299003907448,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406734295","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000003889077,0.00018800604,4.3048138e-7,0.0006315883,0.000011454823,0.0005952326,0.000094124116,0.000316006,0.9981593],"genre_scores_gemma":[0.0000032717273,0.0000023227942,0.000010640052,0.00041477525,0.0009663335,0.00003214139,0.00010569316,0.00014759372,0.99831724],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983678,0.000016220449,0.00040165268,0.00047742424,0.0003648292,0.0003720621],"domain_scores_gemma":[0.99858373,0.00005027155,0.00010270281,0.00069307117,0.0001141487,0.00045607664],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00009110823,0.0004636887,0.00065859564,0.0003862501,0.00013596517,0.00002927244,0.00016184189,0.00053336425,0.99828506],"category_scores_gemma":[0.00002581455,0.0004206909,0.0003422746,0.00006943228,0.00010074246,0.000045537457,0.00006122793,0.0006434023,0.99824023],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013656901,0.000101271544,1.3537263e-7,0.00007171571,0.000313155,0.0002503401,0.000013737326,0.000008184539,0.00024993555,0.000070927585,0.436179,0.562605],"study_design_scores_gemma":[0.0004506658,0.0005598262,0.000009159923,0.00032022607,0.00036037134,0.00024563057,2.31957e-7,0.0000048218644,0.00002037882,0.00008324584,0.99751043,0.0004350057],"about_ca_topic_score_codex":0.000005472284,"about_ca_topic_score_gemma":2.5741792e-7,"teacher_disagreement_score":0.56217,"about_ca_system_score_codex":0.00014546009,"about_ca_system_score_gemma":0.00020580209,"threshold_uncertainty_score":0.99982446},"labels":[],"label_agreement":null},{"id":"W4406861813","doi":"10.57598/r33a","title":"Effecten en kosten van de vaccinatie van Belgische kinderen met geconjugeerd pneumokokkenvaccin","year":2006,"lang":"nl","type":"book","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centers for Disease Control and Prevention; Centre hospitalier universitaire Sainte-Justine; Université Laval; Vrije Universiteit Brussel; Universiteit Hasselt; Université de Genève; Institut National d'assurance Maladie-Invalidité; Institut de Veille Sanitaire; KU Leuven","keywords":"Political science","score_opus":0.009664752860326708,"score_gpt":0.26089542487176154,"score_spread":0.25123067201143484,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406861813","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.017480051,0.0011259883,0.0018994724,0.002702599,0.0021728743,0.003647834,0.00038487816,0.000983777,0.9696025],"genre_scores_gemma":[0.06693091,0.0003420019,0.00030805837,0.0044345227,0.004703855,0.0003370626,0.0010649979,0.0005466842,0.9213319],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99012643,0.0020474943,0.0021246665,0.0020378502,0.0012359992,0.0024275763],"domain_scores_gemma":[0.99276906,0.0019280458,0.0009694952,0.002240093,0.0007026036,0.0013906957],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"category_scores_codex":[0.0026035018,0.0022334794,0.0030551003,0.0018136582,0.0008486911,0.00025911586,0.0011507028,0.0032980894,0.018199386],"category_scores_gemma":[0.0007197098,0.0019085133,0.0015873718,0.0007858179,0.0002025545,0.00039624033,0.0005898997,0.0039730323,0.01550348],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020643487,0.002717209,0.092816986,0.004063912,0.007856192,0.0028518555,0.00072965026,0.0004117445,0.034814376,0.0068797343,0.7994667,0.047185175],"study_design_scores_gemma":[0.0059982585,0.0028980991,0.08159562,0.0012903777,0.005171704,0.0009829013,0.00017680133,0.00019955126,0.0018459469,0.0027297118,0.89463925,0.00247178],"about_ca_topic_score_codex":0.00058867433,"about_ca_topic_score_gemma":0.00036467245,"teacher_disagreement_score":0.095172524,"about_ca_system_score_codex":0.0021927326,"about_ca_system_score_gemma":0.0027057582,"threshold_uncertainty_score":0.9990405},"labels":[],"label_agreement":null},{"id":"W4406861915","doi":"10.57598/r33c","title":"Effects and costs of pneumococcal conjugate vaccination of Belgian children","year":2006,"lang":"en","type":"book","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centers for Disease Control and Prevention; Centre hospitalier universitaire Sainte-Justine; Université Laval; Vrije Universiteit Brussel; Universiteit Hasselt; Université de Genève; Institut National d'assurance Maladie-Invalidité; Institut de Veille Sanitaire; KU Leuven","keywords":"Conjugate; Pneumococcal conjugate vaccine; Vaccination; Pneumococcal vaccination; Medicine; Virology; Streptococcus pneumoniae; Mathematics; Biology; Microbiology; Antibiotics","score_opus":0.004017707805399621,"score_gpt":0.23232403463686419,"score_spread":0.22830632683146457,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406861915","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.32933825,0.00049477885,0.00007162365,0.00022372774,0.00017408372,0.0018141962,0.000079498015,0.00008172301,0.6677221],"genre_scores_gemma":[0.62117326,0.00014121468,0.000036046873,0.00018996405,0.00025860287,0.000023908917,0.00027629168,0.00006307355,0.3778376],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99909097,0.00003225333,0.0003668998,0.0002032941,0.00018571957,0.00012084068],"domain_scores_gemma":[0.9992459,0.00010939683,0.00023721489,0.00017632633,0.00014756234,0.00008359761],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008845664,0.00019664176,0.00058369286,0.00025618335,0.000032931872,0.000003824179,0.00004233361,0.0003273478,0.000056369],"category_scores_gemma":[0.00002711512,0.00015798149,0.00012264839,0.00006603404,0.000080154954,0.000031561056,0.000031773507,0.00022895892,0.000008310101],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032188607,0.0021807502,0.2982551,0.010380802,0.00288694,0.00012624987,0.00021163041,0.000019490417,0.4992944,0.030561138,0.10213027,0.05363135],"study_design_scores_gemma":[0.002658907,0.0011403175,0.96890837,0.00097039226,0.00084292406,0.00014732685,0.0000020032417,0.000015343314,0.012840876,0.00033155165,0.011868545,0.0002734607],"about_ca_topic_score_codex":0.000048459206,"about_ca_topic_score_gemma":0.00002818207,"teacher_disagreement_score":0.6706533,"about_ca_system_score_codex":0.000082573795,"about_ca_system_score_gemma":0.00018519007,"threshold_uncertainty_score":0.6442298},"labels":[],"label_agreement":null},{"id":"W4406874344","doi":"10.1016/j.jinf.2025.106426","title":"Global impact of 10- and 13-valent pneumococcal conjugate vaccines on pneumococcal meningitis in all ages: The PSERENADE project","year":2025,"lang":"en","type":"article","venue":"Journal of Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Calgary Laboratory Services; University of Toronto; Alberta Health Services; University Health Network","funders":"Pan American Health Organization; European Centre for Disease Prevention and Control; National Institute for Health and Care Research; Wellcome Trust; National Institute of Allergy and Infectious Diseases; Bill and Melinda Gates Foundation; Pfizer; Johns Hopkins University; World Health Organization; Medical Research Council; Merck","keywords":"Meningitis; Medicine; Streptococcus pneumoniae; Pneumococcal conjugate vaccine; Pneumococcal disease; Pneumococcal infections; Conjugate; Bacterial meningitis; Virology; Immunology; Pediatrics; Microbiology; Antibiotics; Biology; Mathematics","score_opus":0.02586676576778323,"score_gpt":0.37308415895532243,"score_spread":0.3472173931875392,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406874344","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99581766,0.00012092839,0.000031323627,0.001089973,0.00037390215,0.00035619206,0.0000070337665,0.000015592295,0.0021873699],"genre_scores_gemma":[0.999269,0.0003528859,0.0000055212013,0.00010667765,0.00016057346,0.000009972928,0.0000019423499,0.000008016166,0.00008541672],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987051,0.00015811928,0.0006117428,0.00013647403,0.00019478383,0.00019381806],"domain_scores_gemma":[0.99908674,0.00013198862,0.0003479085,0.00014386566,0.00021016513,0.00007935082],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045879328,0.00017332383,0.00040977175,0.00041092248,0.00007895629,0.000028881059,0.000054653436,0.00012506872,0.000031585314],"category_scores_gemma":[0.00027528836,0.00010076986,0.000285004,0.0005151818,0.00006684625,0.00013417818,0.00002916006,0.00037245924,0.0000023119312],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00065718277,0.0005385781,0.8863129,0.0001299074,0.00046458442,0.000066712266,0.00020121367,0.00097016455,0.10494523,0.00008356028,0.0012499343,0.0043800576],"study_design_scores_gemma":[0.0020302355,0.002715815,0.98940146,0.0005093151,0.00019463542,0.0008992581,0.000041672265,0.00015602386,0.0016098489,0.00014384005,0.0022172336,0.00008066069],"about_ca_topic_score_codex":0.00050723366,"about_ca_topic_score_gemma":0.0002787223,"teacher_disagreement_score":0.10333538,"about_ca_system_score_codex":0.00033779573,"about_ca_system_score_gemma":0.00028485685,"threshold_uncertainty_score":0.41092756},"labels":[],"label_agreement":null},{"id":"W4406923992","doi":"10.1093/ofid/ofae631.842","title":"P-645. Post-pandemic changes in the epidemiology of invasive pneumococcal disease in adults in Toronto, Canada","year":2025,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Toronto Public Health; Lakeridge Health; William Osler Health System; Trillium Health Centre; Toronto East General Hospital; University of Toronto; University of Manitoba; The Scarborough Hospital","funders":"","keywords":"Medicine; Pneumococcal disease; Epidemiology; Pandemic; Coronavirus disease 2019 (COVID-19); Disease; Gerontology; Streptococcus pneumoniae; Internal medicine; Infectious disease (medical specialty); Microbiology; Antibiotics","score_opus":0.013531060921726144,"score_gpt":0.31253556142553074,"score_spread":0.2990045005038046,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406923992","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9828698,0.0013839167,0.0000011178462,0.007447785,0.00024915178,0.0015743661,0.00013455524,0.000018427118,0.006320864],"genre_scores_gemma":[0.99018615,0.00040023818,7.3829506e-7,0.008661726,0.000027365517,0.0005583362,0.000063381,0.000012034449,0.00009003924],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99812925,0.00043383203,0.0005121585,0.0003541077,0.00012705328,0.00044362806],"domain_scores_gemma":[0.9983268,0.0008963813,0.0001310722,0.00040026338,0.00008296578,0.00016254057],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032464732,0.00020552152,0.00057477306,0.00022289503,0.00008503713,0.0000100159805,0.0002994427,0.000097260265,0.000119761804],"category_scores_gemma":[0.0019802738,0.00015143043,0.000087645734,0.0004901569,0.00011828084,0.00015073268,0.0001757392,0.00025340926,0.0000024907652],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029284146,0.0006633363,0.9957864,0.00019233132,0.000029798386,0.000119812634,0.0001264599,0.00008893415,0.00014418957,0.0011016199,0.00048155175,0.0009727124],"study_design_scores_gemma":[0.0021963944,0.00025208812,0.9936691,0.0007388298,0.000056254663,0.000011047505,0.001171679,0.00004789337,0.00001622332,0.00072224584,0.0009803699,0.00013785715],"about_ca_topic_score_codex":0.7313826,"about_ca_topic_score_gemma":0.9948666,"teacher_disagreement_score":0.26348397,"about_ca_system_score_codex":0.0008701109,"about_ca_system_score_gemma":0.0023539402,"threshold_uncertainty_score":0.6175154},"labels":[],"label_agreement":null},{"id":"W4406944927","doi":"10.1093/ofid/ofae631.1848","title":"P-1682. Evaluation of Antibiotic Prescribing Practices for Pediatric Acute Otitis Media and Community-Acquired Pneumonia in an Emergency Department","year":2025,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"SickKids Foundation; University of Toronto; Hospital for Sick Children","funders":"","keywords":"Medicine; Emergency department; Acute otitis media; Pneumonia; Community-acquired pneumonia; Antibiotics; Otitis; Intensive care medicine; Bacterial pneumonia; Pediatrics; Internal medicine; Microbiology; Surgery; Nursing","score_opus":0.05456178619140202,"score_gpt":0.3898316461354511,"score_spread":0.3352698599440491,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406944927","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99336094,0.0006750066,0.000042560536,0.0005079363,0.0004624329,0.0025155032,0.00016107353,0.00004787391,0.002226704],"genre_scores_gemma":[0.99868345,0.00051994895,0.000022401255,0.00017668049,0.000043722906,0.00030817225,0.00017213513,0.000019627616,0.000053853888],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99825686,0.0005349676,0.00044386735,0.00026762337,0.00023924683,0.00025742096],"domain_scores_gemma":[0.99845994,0.00027806262,0.00036253146,0.0003866642,0.00037192865,0.00014088438],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00075357145,0.00017927175,0.00037534273,0.00036116663,0.0004690335,0.000073715004,0.00015862999,0.00008909989,0.000048926267],"category_scores_gemma":[0.0012779166,0.00016840451,0.00008488993,0.0005025801,0.00006242988,0.0006234107,0.00017574418,0.00014757154,0.000002067964],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010309494,0.0017837855,0.9884142,0.00028427565,0.00016070333,0.0000037593486,0.00023454973,0.000050623337,0.0032228369,0.00025075785,0.00033158736,0.00515981],"study_design_scores_gemma":[0.003277492,0.0010421943,0.9888248,0.00013880142,0.0024580907,0.00001396023,0.0005596091,0.0009228721,0.00042220674,0.0018036047,0.00035999095,0.0001763846],"about_ca_topic_score_codex":0.0005020062,"about_ca_topic_score_gemma":0.0032160622,"teacher_disagreement_score":0.0053225486,"about_ca_system_score_codex":0.000121645855,"about_ca_system_score_gemma":0.00041254653,"threshold_uncertainty_score":0.6867337},"labels":[],"label_agreement":null},{"id":"W4406945105","doi":"10.1093/ofid/ofae631.252","title":"P-45. A Phase 3, Randomized Trial Investigating the Safety, Tolerability, and Immunogenicity of V116, an Investigational Adult-Specific Pneumococcal Conjugate Vaccine, in Pneumococcal Vaccine-Naïve Adults 18–64 Years of Age with Increased Risk for Pneumococcal Disease","year":2025,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Immunogenicity; Pneumococcal conjugate vaccine; Tolerability; Streptococcus pneumoniae; Pneumococcal vaccine; Virology; Immunology; Internal medicine; Adverse effect; Antibiotics; Microbiology; Antibody","score_opus":0.013512962918968549,"score_gpt":0.3036400316090577,"score_spread":0.2901270686900892,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406945105","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98608375,0.00025873852,0.00013521657,0.00082788424,0.00021171776,0.011141719,0.0009758564,0.0000885372,0.00027657463],"genre_scores_gemma":[0.9971432,0.00016824596,0.00006176396,0.00045050617,0.00010371663,0.0015361198,0.00045670324,0.000059719758,0.000020036185],"study_design_codex":"observational","study_design_gemma":"randomized_trial","domain_scores_codex":[0.99504435,0.001192381,0.0018830729,0.00088726607,0.00042473333,0.00056819106],"domain_scores_gemma":[0.994698,0.0022314214,0.0009124107,0.0009075695,0.00059031276,0.00066027767],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0013264215,0.0005511488,0.0018924157,0.0004468388,0.00051060965,0.00015260583,0.00046272893,0.00020041816,0.000053453674],"category_scores_gemma":[0.003836443,0.00041175238,0.00052151247,0.00092209375,0.0008581416,0.0004928899,0.0003544,0.00053817494,0.0000019396243],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.4599496,0.0043918504,0.51518,0.00047342345,0.0006278427,0.00003209071,0.00032893757,0.00033672317,0.014368166,0.0025319858,0.00006119945,0.0017181475],"study_design_scores_gemma":[0.49889174,0.0022729503,0.48830053,0.00075160817,0.0010353682,0.000019137855,0.00026734342,0.0023803576,0.0005364872,0.0050183693,0.00015181513,0.00037431446],"about_ca_topic_score_codex":0.0013778949,"about_ca_topic_score_gemma":0.0012553346,"teacher_disagreement_score":0.038942102,"about_ca_system_score_codex":0.00016674823,"about_ca_system_score_gemma":0.0013118215,"threshold_uncertainty_score":0.9998334},"labels":[],"label_agreement":null},{"id":"W4406954859","doi":"10.1093/ofid/ofae631.317","title":"P-110. Promoting Optimal Treatment for Community-Acquired Pneumonia in the Emergency Room: a Before-After Study of a Novel Care Pathway","year":2025,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hamilton Health Sciences; University of British Columbia; St. Joseph’s Healthcare Hamilton; McMaster University","funders":"","keywords":"Medicine; Community-acquired pneumonia; Pneumonia; Intensive care medicine; Emergency department; Emergency medicine; Medical emergency; Internal medicine; Nursing","score_opus":0.026527590457314384,"score_gpt":0.33784352912934046,"score_spread":0.31131593867202606,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406954859","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9908447,0.00016735676,0.000058515925,0.00043021698,0.00020840316,0.0058387006,0.00019282878,0.000052285897,0.0022069379],"genre_scores_gemma":[0.9947419,0.0000073323586,0.000010459735,0.00029230432,0.00003051931,0.004608124,0.000058050104,0.000026487663,0.00022479803],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99851865,0.00022396067,0.00049281574,0.00026867783,0.00015704261,0.0003388281],"domain_scores_gemma":[0.99883926,0.00010909698,0.00014201256,0.0006396523,0.00018418848,0.00008580284],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018519057,0.000260985,0.00047697034,0.00021944866,0.0006224474,0.00006306326,0.00028560747,0.000072915966,0.000029710918],"category_scores_gemma":[0.00013402986,0.00017448574,0.00023061632,0.00053705194,0.000044071276,0.00015761808,0.00020652695,0.00014158121,0.0000022106515],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027913338,0.016555935,0.96023214,0.00028509635,0.0003301556,0.000018053086,0.014581757,0.00011111271,0.0012275674,0.00016465549,0.00005051613,0.006163892],"study_design_scores_gemma":[0.012193699,0.013643032,0.9290105,0.00037911886,0.0008677376,0.000024286766,0.03978793,0.00026019875,0.00023153999,0.00019829447,0.0031273416,0.00027630274],"about_ca_topic_score_codex":0.0014177698,"about_ca_topic_score_gemma":0.009157173,"teacher_disagreement_score":0.031221608,"about_ca_system_score_codex":0.00021124896,"about_ca_system_score_gemma":0.00028066515,"threshold_uncertainty_score":0.71153224},"labels":[],"label_agreement":null},{"id":"W4406988590","doi":"10.3138/jammi-2024-0018","title":"Detection of atypical bacteria, including <i>Mycoplasma pneumoniae</i>, British Columbia, Canada, 2013–2023","year":2025,"lang":"en","type":"article","venue":"Journal of the Association of Medical Microbiology and Infectious Disease Canada","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"BC Centre for Disease Control","funders":"","keywords":"Mycoplasma pneumoniae; Pandemic; Legionella; Coronavirus disease 2019 (COVID-19); Mycoplasma; Chlamydophila pneumoniae; Virology; Legionella pneumophila; Medicine; Chlamydia; Pneumonia; Biology; Immunology; Microbiology; Internal medicine; Bacteria; Infectious disease (medical specialty); Chlamydiales; Disease","score_opus":0.0035677809073925144,"score_gpt":0.21109775682732548,"score_spread":0.20752997591993297,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406988590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9896037,0.00036767765,0.000015822865,0.0075186808,0.0021813717,0.00012226275,0.00009885719,0.000003897276,0.00008771463],"genre_scores_gemma":[0.9970973,0.0002689715,0.0000012583438,0.0019785827,0.00010407863,0.0000026121015,0.0000042149995,0.000005230198,0.0005377277],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985801,0.00022623419,0.0006149756,0.00010539303,0.00030411597,0.00016919496],"domain_scores_gemma":[0.9982853,0.00031775536,0.00067040115,0.00010246027,0.00040195527,0.00022215428],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00049659057,0.000080618345,0.0004041899,0.000055534932,0.00019517435,0.000013408156,0.00011929096,0.00020328852,0.00008650992],"category_scores_gemma":[0.0020034066,0.000079272715,0.0001283147,0.00023455558,0.000107374195,0.000037949234,0.00006842037,0.0004418509,1.2475502e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005920481,0.00011333233,0.8933059,0.00013651724,0.00042854206,0.000033009223,0.000007556355,0.000007830798,0.049035523,0.0000075667094,0.055652186,0.0012128424],"study_design_scores_gemma":[0.0018965248,0.00015205241,0.8933414,0.00057579135,0.0004486063,0.0007693143,0.00003994202,0.000019996967,0.0010178391,0.00006818161,0.10157143,0.00009891201],"about_ca_topic_score_codex":0.90369004,"about_ca_topic_score_gemma":0.99804246,"teacher_disagreement_score":0.09435245,"about_ca_system_score_codex":0.00083379284,"about_ca_system_score_gemma":0.006592024,"threshold_uncertainty_score":0.99903965},"labels":[],"label_agreement":null},{"id":"W4407103151","doi":"10.1007/s40121-025-01108-3","title":"Delayed Transition to 20-Valent Pneumococcal Conjugate Vaccine in Pediatric National Immunization Programs: Forgone Public Health and Economic Benefit","year":2025,"lang":"en","type":"article","venue":"Infectious Diseases and Therapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer","keywords":"Medicine; Pneumococcal conjugate vaccine; Immunization; Immunization program; Pediatrics; Family medicine; Public health; Streptococcus pneumoniae; Intensive care medicine; Immunology; Nursing","score_opus":0.014005124577854815,"score_gpt":0.2856614232004554,"score_spread":0.2716562986226006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407103151","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98856556,0.002602979,0.0002472181,0.007241826,0.0001425737,0.0009101895,0.00003649093,0.00009242454,0.00016073752],"genre_scores_gemma":[0.9890158,0.007431403,0.0000053730646,0.0031131424,0.00011839346,0.00017169554,0.00010622518,0.0000136198405,0.00002430451],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99912465,0.000049606882,0.00028556414,0.00024542588,0.00008430095,0.00021044117],"domain_scores_gemma":[0.99946815,0.000037219517,0.00005879961,0.00009564846,0.00008989114,0.0002502747],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013073669,0.00014280346,0.00023541691,0.00044179242,0.00019059368,0.000060863942,0.000026091924,0.000062591906,0.000013881771],"category_scores_gemma":[0.000015926018,0.00013005477,0.000054781136,0.0003309423,0.000022481921,0.00012554218,0.000013974364,0.00009924389,0.0000036034976],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024078741,0.00087560946,0.9544184,0.0001275583,0.00012082924,0.0000031125012,0.00035120067,0.00026166934,0.00054590293,0.0013623502,0.0000860558,0.041606527],"study_design_scores_gemma":[0.005199854,0.0015857042,0.9826326,0.000055399196,0.000043567,0.00003661021,0.00006821011,0.0007745405,0.000012876188,0.0014559382,0.007958911,0.00017580648],"about_ca_topic_score_codex":0.00011965899,"about_ca_topic_score_gemma":0.0002624908,"teacher_disagreement_score":0.04143072,"about_ca_system_score_codex":0.0001775168,"about_ca_system_score_gemma":0.00035242236,"threshold_uncertainty_score":0.53034794},"labels":[],"label_agreement":null},{"id":"W4407136850","doi":"10.1128/spectrum.01087-24","title":"Diagnostic value of metagenomic next-generation sequencing using bronchoalveolar lavage fluid samples for pathogen detection in children with severe or refractory pneumonia","year":2025,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Monsanto (Canada)","funders":"","keywords":"Bronchoalveolar lavage; Metagenomics; Pneumonia; DNA sequencing; Pathogen; Medicine; Refractory (planetary science); Biology; Immunology; Internal medicine; Gene; Genetics; Lung","score_opus":0.034308444131748335,"score_gpt":0.26647687329854314,"score_spread":0.2321684291667948,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407136850","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933702,0.00044153354,0.0045940466,0.00016365446,0.00020156473,0.0010388886,0.00012343658,0.000044576886,0.000022129549],"genre_scores_gemma":[0.9983858,0.00007624647,0.0007883766,0.00032147145,0.00013630204,0.00005155924,0.00014179636,0.00002610464,0.0000723689],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987311,0.0001403982,0.0004004911,0.0003821621,0.000035885863,0.00030997436],"domain_scores_gemma":[0.99929744,0.00018733324,0.00015042374,0.00026224088,0.000060541763,0.00004199137],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023373359,0.00021044271,0.00043649558,0.00037412977,0.00016773956,0.000013293701,0.000079722486,0.00022200723,0.00002048778],"category_scores_gemma":[0.00021778367,0.00016341824,0.000094509356,0.00031486663,0.0001109479,0.000093267,0.00003104432,0.00022340786,0.0000029166956],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010857636,0.000073314855,0.08817097,0.000055343688,0.00021072401,0.0000070627416,0.0000766156,0.00071682734,0.9100846,0.00003189434,0.000010817637,0.00045327208],"study_design_scores_gemma":[0.00252394,0.0012234322,0.16740929,0.00021455031,0.0006208471,0.0010217058,0.000107166525,0.00090229645,0.8243104,0.000058211546,0.0013052134,0.00030292082],"about_ca_topic_score_codex":0.00036280768,"about_ca_topic_score_gemma":0.0016925111,"teacher_disagreement_score":0.08577415,"about_ca_system_score_codex":0.00046552828,"about_ca_system_score_gemma":0.0004875796,"threshold_uncertainty_score":0.66640025},"labels":[],"label_agreement":null},{"id":"W4407150164","doi":"10.1136/bmjopen-2024-097455","title":"Azithromycin to prevent acute lower respiratory infections among Australian and New Zealand First Nations and Timorese children (PETAL trial): study protocol for a multicentre, international, double-blind, randomised controlled trial","year":2025,"lang":"en","type":"article","venue":"BMJ Open","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Health and Medical Research Council","keywords":"Medicine; Azithromycin; Randomized controlled trial; Bronchiectasis; Pediatrics; Placebo; Placebo-controlled study; Psychological intervention; Internal medicine; Antibiotics; Lung; Double blind; Alternative medicine; Psychiatry","score_opus":0.08320660687428343,"score_gpt":0.45903531749761756,"score_spread":0.3758287106233341,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407150164","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.37080967,0.0000013162778,0.000029667719,0.002625806,0.00034226364,0.6251899,0.000020316824,0.000037318852,0.00094375457],"genre_scores_gemma":[0.061053652,0.0000023168272,0.00007234655,0.0003118699,0.00049123337,0.9194134,0.000019884399,0.000026779537,0.01860854],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.99804103,0.00016555573,0.0008000104,0.0004927836,0.00025272285,0.00024788873],"domain_scores_gemma":[0.9984337,0.00042893595,0.00024782823,0.00037330235,0.0002023286,0.00031390035],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008919375,0.0002643539,0.0007306169,0.00043143803,0.0005103351,0.0003356039,0.00020738828,0.00013196906,0.00011744327],"category_scores_gemma":[0.0009680652,0.00020208272,0.00017961678,0.000368082,0.000070042464,0.0002769686,0.00024379625,0.00019341089,0.0000071588925],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.9672623,0.0038409696,0.0150764305,0.000033898228,0.0018037409,0.000009839781,0.00034984256,0.00002603156,0.000080437894,0.000024180546,0.011261105,0.00023118757],"study_design_scores_gemma":[0.94590324,0.004507395,0.019719288,0.00025303918,0.00080972654,0.000008311585,0.00006402549,0.000027452323,0.000057322864,0.000013909922,0.028433578,0.00020273721],"about_ca_topic_score_codex":0.00035050552,"about_ca_topic_score_gemma":0.0045223176,"teacher_disagreement_score":0.30975604,"about_ca_system_score_codex":0.00009166902,"about_ca_system_score_gemma":0.00058138,"threshold_uncertainty_score":0.82406944},"labels":[],"label_agreement":null},{"id":"W4407206035","doi":"10.1007/s40121-025-01109-2","title":"Economic Evaluation of Transitioning to the 20-Valent Pneumococcal Conjugate Vaccine in the Dutch Paediatric National Immunisation Programme","year":2025,"lang":"en","type":"article","venue":"Infectious Diseases and Therapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada); TransCanada (Canada)","funders":"Pfizer","keywords":"Medicine; Pneumococcal conjugate vaccine; Pediatrics; Pneumococcal disease; Family medicine; Vaccination; Pneumococcal infections; Streptococcus pneumoniae; Immunology; Intensive care medicine; Microbiology","score_opus":0.020566567683631284,"score_gpt":0.3173868852903041,"score_spread":0.2968203176066728,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407206035","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9894187,0.0013008636,0.000058772668,0.0069941157,0.00017464349,0.0012461201,0.000020329231,0.000024331806,0.00076213246],"genre_scores_gemma":[0.9975904,0.0005299467,0.0000013380939,0.0013378952,0.00012666265,0.00037514366,0.000023843311,0.000006003976,0.000008751547],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990778,0.00021344489,0.00024131517,0.0001401174,0.00020722942,0.000120124074],"domain_scores_gemma":[0.9994591,0.00014532503,0.000060710627,0.00013759777,0.00015866543,0.00003859068],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00068999047,0.00009627017,0.00013939735,0.00018799271,0.00018949692,0.000034589822,0.000051292227,0.000040518167,0.00003255891],"category_scores_gemma":[0.000052962063,0.00005806018,0.000087027714,0.0002927871,0.00003274854,0.00005700807,0.0000085740185,0.00010218973,0.000004240582],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033386084,0.0012510073,0.84452087,0.000083721396,0.00033240477,0.0000021962467,0.0018555971,0.012675392,0.006906304,0.0030321397,0.0003777498,0.12862875],"study_design_scores_gemma":[0.0030140765,0.00033174802,0.9860968,0.00003784498,0.00016766334,0.000016189268,0.00022257057,0.0024129017,0.00007878741,0.0023654671,0.005184076,0.00007185032],"about_ca_topic_score_codex":0.00008066445,"about_ca_topic_score_gemma":0.00013373788,"teacher_disagreement_score":0.14157595,"about_ca_system_score_codex":0.00011273993,"about_ca_system_score_gemma":0.00028438657,"threshold_uncertainty_score":0.23676254},"labels":[],"label_agreement":null},{"id":"W4407369945","doi":"10.2139/ssrn.5103700","title":"Long Term Effects of Azithromycin Mass Administration to Reduce Childhood Mortality on Streptococcus Pneumoniae Antimicrobial Resistance Following a Community-Randomised Trial","year":2025,"lang":"en","type":"preprint","venue":"SSRN Electronic Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Azithromycin; Streptococcus pneumoniae; Antimicrobial; Medicine; Term (time); Randomized controlled trial; Administration (probate law); Internal medicine; Microbiology; Antibiotics; Biology; Political science","score_opus":0.014648844536955636,"score_gpt":0.31827274485057777,"score_spread":0.30362390031362213,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407369945","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99004376,0.00027336556,0.0010482566,0.0011196698,0.001999305,0.004562499,0.000045231493,0.00008571964,0.00082216715],"genre_scores_gemma":[0.99743855,0.00044823907,0.000034382403,0.0003091346,0.000695339,0.00021426914,0.000068671514,0.00004962434,0.0007417864],"study_design_codex":"bench_or_experimental","study_design_gemma":"randomized_trial","domain_scores_codex":[0.99481153,0.0012144276,0.0012590112,0.00053791876,0.0006077122,0.0015694083],"domain_scores_gemma":[0.99719214,0.00040961689,0.0008313018,0.0010402484,0.00026212045,0.00026458688],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0025758212,0.0005938158,0.0013788415,0.0005550562,0.0006876665,0.000099670884,0.00051659363,0.00053964346,0.000006103496],"category_scores_gemma":[0.0010266209,0.00054761814,0.0011306916,0.00039626425,0.00009058555,0.0000871012,0.00016046148,0.00886757,0.0000050494577],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.15172453,0.016247261,0.04826572,0.008182805,0.022856403,0.00085347705,0.0038391326,0.0006404938,0.7313109,0.0021758045,0.00070787343,0.013195617],"study_design_scores_gemma":[0.47559655,0.021159284,0.29188883,0.029936245,0.009927643,0.00040290397,0.0009147122,0.000014891172,0.15494472,0.012338728,0.00022051932,0.0026549825],"about_ca_topic_score_codex":0.00004152995,"about_ca_topic_score_gemma":0.0010829222,"teacher_disagreement_score":0.5763662,"about_ca_system_score_codex":0.00166045,"about_ca_system_score_gemma":0.010688531,"threshold_uncertainty_score":0.9996975},"labels":[],"label_agreement":null},{"id":"W4407393521","doi":"10.14745/ccdr.v51i23a02f","title":"Comparaison des vaccins pneumococciques conjugués 13-, 15- et 20-valents dans la population pédiatrique canadienne : une analyse coût/utilité","year":2025,"lang":"fr","type":"article","venue":"Relevé des maladies transmissibles au Canada","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine","score_opus":0.013073244308539877,"score_gpt":0.26810321558811456,"score_spread":0.25502997127957466,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407393521","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94485956,0.023888394,0.0010851597,0.004916513,0.0017100478,0.0009382238,0.0007782878,0.00018470913,0.021639086],"genre_scores_gemma":[0.9725287,0.013875918,0.00015612811,0.0011859704,0.00028839806,0.0000907812,0.00026170278,0.000102814694,0.011509584],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9943728,0.00089954573,0.0013307283,0.00092851545,0.00046602177,0.002002384],"domain_scores_gemma":[0.99646246,0.0007574335,0.00029163095,0.000755023,0.00042189195,0.0013115793],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00071997935,0.00092028914,0.0013529027,0.00065025646,0.0012438076,0.00013096178,0.0004136743,0.00056145614,0.0003933239],"category_scores_gemma":[0.00025314602,0.0009336492,0.00043782883,0.002096137,0.0008366523,0.00038846905,0.000055911874,0.000997914,0.000009238629],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":true,"study_design_scores_codex":[0.00020963272,0.000475465,0.94395554,0.011287293,0.001613472,0.0008205119,0.0033492486,0.007345027,0.0063932613,0.0058715316,0.0031420274,0.015536975],"study_design_scores_gemma":[0.001660458,0.00031854748,0.8618427,0.008084981,0.0016240171,0.0002295489,0.0027391945,0.0024177325,0.0013233235,0.0007108547,0.11830365,0.0007449724],"about_ca_topic_score_codex":0.97467405,"about_ca_topic_score_gemma":0.999638,"teacher_disagreement_score":0.11516163,"about_ca_system_score_codex":0.0050928444,"about_ca_system_score_gemma":0.0077692186,"threshold_uncertainty_score":0.9993114},"labels":[],"label_agreement":null},{"id":"W4407393590","doi":"10.14745/ccdr.v51i23a03f","title":"Coût-efficacité d'un vaccin antipneumococcique conjugué 21-valent chez l'adulte : un examen systématique des évaluations économiques","year":2025,"lang":"fr","type":"article","venue":"Relevé des maladies transmissibles au Canada","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"","funders":"Health Canada","keywords":"Medicine; Political science","score_opus":0.016430806317947324,"score_gpt":0.2508414522341329,"score_spread":0.23441064591618557,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407393590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.90123045,0.05449246,0.00833722,0.008475348,0.0027086106,0.0024162242,0.0004885328,0.00034622368,0.021504907],"genre_scores_gemma":[0.9269214,0.055549234,0.00083634775,0.0017072796,0.00054806675,0.0004223431,0.00007342613,0.00013599302,0.013805893],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9939777,0.0010559096,0.0016674909,0.001039984,0.00046532176,0.0017935664],"domain_scores_gemma":[0.9959792,0.0010627802,0.00034603648,0.00094004296,0.00064357446,0.0010283926],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010740313,0.001036665,0.0014610615,0.0005408028,0.0016861999,0.0001724678,0.0005174883,0.00064758054,0.0014607381],"category_scores_gemma":[0.00043850212,0.0010378809,0.00049227814,0.0012703392,0.0010952629,0.0003617531,0.000084323394,0.0010663066,0.000036835212],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005472794,0.002363197,0.4305514,0.07193201,0.0092472555,0.0016424814,0.009000408,0.009486258,0.06347919,0.04386857,0.010240021,0.34764192],"study_design_scores_gemma":[0.0042558643,0.0007402099,0.7231666,0.032519165,0.002908857,0.00049955945,0.0021436976,0.003246601,0.062396172,0.0026464823,0.16386282,0.0016140006],"about_ca_topic_score_codex":0.27696258,"about_ca_topic_score_gemma":0.8033152,"teacher_disagreement_score":0.52635264,"about_ca_system_score_codex":0.0037820912,"about_ca_system_score_gemma":0.010718303,"threshold_uncertainty_score":0.99961346},"labels":[],"label_agreement":null},{"id":"W4407393725","doi":"10.14745/ccdr.v51i23a03","title":"Cost effectiveness of a 21-valent pneumococcal conjugate vaccine in adults: A systematic review of economic evaluations","year":2025,"lang":"en","type":"review","venue":"Canada Communicable Disease Report","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"McGill University; University of Toronto; Public Health Agency of Canada","funders":"Health Canada","keywords":"Pneumococcal conjugate vaccine; Medicine; Streptococcus pneumoniae; Biology; Microbiology","score_opus":0.03410607676426547,"score_gpt":0.3815866498015991,"score_spread":0.34748057303733365,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407393725","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00011702352,0.98805827,0.0000027440926,0.00008079988,0.00021364313,0.010034497,0.0005104417,0.000018940367,0.0009636506],"genre_scores_gemma":[0.0016975077,0.99387,0.0000033134104,0.00009447887,0.000013493167,0.0032400023,0.00090187823,0.00003970658,0.00013960949],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.99391216,0.0018361309,0.0031570808,0.00041032388,0.00040454356,0.0002797489],"domain_scores_gemma":[0.9930375,0.001528006,0.0017457824,0.002901459,0.00043754745,0.00034966468],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.002054458,0.00045671355,0.0057770824,0.00036218663,0.00007650028,0.0000061014903,0.00043629453,0.00014747733,0.000052352556],"category_scores_gemma":[0.002807786,0.00037241523,0.00084772106,0.00059700955,0.00007621045,0.000045354638,0.00021505113,0.00049701706,0.0000028492218],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033317025,0.00022879076,0.0004665468,0.99696743,0.00061686605,0.00049681094,0.0000030304836,0.000015017863,9.681113e-7,0.00003707438,0.00017596305,0.0009581865],"study_design_scores_gemma":[0.0006775882,0.0000468915,0.00068858505,0.9474673,0.009431234,0.00032010366,0.000012995807,0.000022158674,0.0000012363863,0.0000053264166,0.0410845,0.00024205042],"about_ca_topic_score_codex":0.030038118,"about_ca_topic_score_gemma":0.046125717,"teacher_disagreement_score":0.049500093,"about_ca_system_score_codex":0.001944816,"about_ca_system_score_gemma":0.027605083,"threshold_uncertainty_score":0.9998728},"labels":[],"label_agreement":null},{"id":"W4407405590","doi":"10.14745/ccdr.v51i23a02","title":"Comparison of 13-, 15- and 20-valent pneumococcal conjugate vaccines in the paediatric Canadian population: A cost-utility analysis","year":2025,"lang":"en","type":"article","venue":"Canada Communicable Disease Report","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"University of Toronto; Public Health Agency of Canada","funders":"","keywords":"Pneumococcal conjugate vaccine; Conjugate; Pneumococcal disease; Medicine; Pneumococcal infections; Conjugate vaccine; Population; Virology; Streptococcus pneumoniae; Environmental health; Immunology; Immunization; Biology; Microbiology; Mathematics; Antigen","score_opus":0.021798591461744773,"score_gpt":0.32643141308580287,"score_spread":0.3046328216240581,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407405590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98815095,0.0023286978,0.000005020127,0.0057611014,0.00009800205,0.0006018937,0.00008248414,0.000012453123,0.0029594158],"genre_scores_gemma":[0.9986542,0.00007807571,0.000003715666,0.0007948425,0.000015511492,0.00006399334,0.00023857318,0.0000058097744,0.00014532029],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99841356,0.0002261052,0.000651344,0.0002128735,0.00025108288,0.00024500262],"domain_scores_gemma":[0.9979691,0.00019104496,0.00016462452,0.0011333342,0.00015993626,0.0003819976],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045033358,0.00014160523,0.0005323114,0.00035531697,0.00026795207,0.00001912494,0.00018218358,0.000058309983,0.000044069162],"category_scores_gemma":[0.0003143526,0.000110722925,0.00012792806,0.0013351865,0.0000686974,0.000039644277,0.000065176835,0.00028467053,2.3064835e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026838628,0.00011877819,0.9967381,0.0000953319,0.00021077532,0.0003317146,0.0000388046,0.00043103364,0.000015309504,0.000034324752,0.0015896996,0.00036933742],"study_design_scores_gemma":[0.00035309547,0.000013992628,0.9685568,0.000042290925,0.001120704,0.00002477404,0.0003229939,0.0029262349,0.000004810039,0.000028337245,0.026517766,0.00008817521],"about_ca_topic_score_codex":0.93325055,"about_ca_topic_score_gemma":0.99625784,"teacher_disagreement_score":0.06300729,"about_ca_system_score_codex":0.00030030194,"about_ca_system_score_gemma":0.0033792679,"threshold_uncertainty_score":0.59946764},"labels":[],"label_agreement":null},{"id":"W4407948677","doi":"10.2139/ssrn.5146332","title":"Estimating the Dynamic Abundance of Streptococcus Pneumococcal Serotypes","year":2025,"lang":"en","type":"preprint","venue":"SSRN Electronic Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"","keywords":"Serotype; Streptococcus pneumoniae; Microbiology; Abundance (ecology); Biology; Ecology; Antibiotics","score_opus":0.009155307581786372,"score_gpt":0.29977394321779355,"score_spread":0.29061863563600715,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407948677","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9715312,0.0036964205,0.015077012,0.0044896416,0.0015767618,0.0010442968,0.000030070618,0.00009085871,0.002463745],"genre_scores_gemma":[0.9954427,0.0011691656,0.00015001892,0.00014901152,0.0004048526,0.00005544907,0.000010033928,0.000026898117,0.002591882],"study_design_codex":"design_other","study_design_gemma":"theoretical_or_conceptual","domain_scores_codex":[0.9972069,0.00014873984,0.00064412603,0.00031154152,0.0003372521,0.001351417],"domain_scores_gemma":[0.9984509,0.000112816124,0.0005475884,0.0005410277,0.00026134696,0.00008633401],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0011615893,0.0003047907,0.0005530239,0.00021736589,0.00032680173,0.00004260608,0.0004093508,0.00028440135,0.000027020571],"category_scores_gemma":[0.0001949653,0.00020183992,0.0004396882,0.00023468725,0.00016212223,0.000046160723,0.00022813205,0.006956301,0.000009752741],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00089727977,0.0030896657,0.22893229,0.00624078,0.017641926,0.00019381414,0.0034360175,0.1282479,0.13480371,0.08082746,0.00049034983,0.3951988],"study_design_scores_gemma":[0.0076744803,0.0047804103,0.17285866,0.012708078,0.0066891634,0.008276331,0.004320776,0.08921706,0.0027120158,0.67675376,0.0114052,0.0026040834],"about_ca_topic_score_codex":0.000045076675,"about_ca_topic_score_gemma":0.00039256812,"teacher_disagreement_score":0.5959263,"about_ca_system_score_codex":0.0009987098,"about_ca_system_score_gemma":0.00908304,"threshold_uncertainty_score":0.9965345},"labels":[],"label_agreement":null},{"id":"W4408012587","doi":"10.1080/21645515.2025.2469424","title":"Global distribution and characteristics of pneumococcal serotypes in adults","year":2025,"lang":"en","type":"review","venue":"Human Vaccines & Immunotherapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Japan Society for the Promotion of Science","keywords":"Serotype; Streptococcus pneumoniae; Pneumococcal disease; Pneumococcal infections; Biology; Medicine; Microbiology; Virology; Immunology; Antibiotics","score_opus":0.023456144601833456,"score_gpt":0.34682278848658193,"score_spread":0.32336664388474845,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408012587","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.011730879,0.98631275,0.000019873956,0.000038931255,0.000254401,0.0010025277,0.00037163007,0.000052385043,0.00021662291],"genre_scores_gemma":[0.0088094575,0.9902209,0.00000548723,0.0000655362,0.0001109356,0.0000626792,0.0005111781,0.000029259401,0.0001845453],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99823034,0.00010838686,0.0009551133,0.0003210799,0.00012990601,0.00025520162],"domain_scores_gemma":[0.998929,0.00008775863,0.0003678935,0.0004300394,0.00012900952,0.000056260873],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001267288,0.00040491906,0.0016896694,0.0001882284,0.00009078609,0.00002091352,0.00013507753,0.00043564552,0.000029135896],"category_scores_gemma":[0.00003917161,0.00033151073,0.0002956391,0.0005272331,0.000069339134,0.00003968467,0.000074705924,0.00035454973,0.000005343429],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007996426,0.00044903738,0.022721382,0.04657624,0.00043585864,0.00002259811,0.00005567037,1.0538684e-7,0.000056123743,0.00080735906,0.000026348316,0.9287693],"study_design_scores_gemma":[0.0012854452,0.000317645,0.14087176,0.036630582,0.0013939171,0.00012491203,0.000014098659,0.0000033386293,0.0000023059442,0.00005638179,0.81895643,0.00034319708],"about_ca_topic_score_codex":0.000028796105,"about_ca_topic_score_gemma":0.000040580715,"teacher_disagreement_score":0.9284261,"about_ca_system_score_codex":0.00018933577,"about_ca_system_score_gemma":0.00029077893,"threshold_uncertainty_score":0.9999137},"labels":[],"label_agreement":null},{"id":"W4408013802","doi":"10.1097/mjt.0000000000001931","title":"Should Patients Hospitalized for Community-Acquired Pneumonia Be Treated With Additional Antimicrobial Agents Directed Against Anaerobes?","year":2025,"lang":"en","type":"article","venue":"American Journal of Therapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumonia; Antimicrobial; Anti-Infective Agents; Community-acquired pneumonia; Intensive care medicine; Microbiology; Internal medicine","score_opus":0.031131101479143584,"score_gpt":0.3096035422126939,"score_spread":0.2784724407335503,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408013802","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959351,0.000012297374,0.00030000956,0.0023957393,0.00019018345,0.00036672334,0.0004565984,0.000053017175,0.00029037645],"genre_scores_gemma":[0.9853135,0.00009233327,0.0008541946,0.0131893605,0.00006972515,0.000017173279,0.00028007058,0.000034750927,0.00014890483],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986804,0.00021814796,0.00047851677,0.00011953833,0.00024777386,0.00025559898],"domain_scores_gemma":[0.99811494,0.00020753339,0.0005267798,0.00024697479,0.00077454513,0.00012923857],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014329875,0.00022188996,0.00056778267,0.0003002342,0.0003275618,0.000032663676,0.00017855283,0.000070145295,0.000045000863],"category_scores_gemma":[0.000061750514,0.00016243769,0.00024382104,0.0005916585,0.00037567414,0.00009083967,0.000023611257,0.00033493555,0.0000012055687],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0069301007,0.008530733,0.77166325,0.00018789961,0.009619064,0.00008364382,0.0016128519,0.00023542561,0.10222619,0.00003563106,0.026940295,0.07193493],"study_design_scores_gemma":[0.011546222,0.010034176,0.83958584,0.00081350055,0.001693685,0.00008768639,0.0006016185,0.00024422994,0.0035172682,0.000027497103,0.13141325,0.00043501792],"about_ca_topic_score_codex":0.00001927016,"about_ca_topic_score_gemma":0.000007028098,"teacher_disagreement_score":0.104472965,"about_ca_system_score_codex":0.00015280167,"about_ca_system_score_gemma":0.00024966247,"threshold_uncertainty_score":0.6624017},"labels":[],"label_agreement":null},{"id":"W4408127928","doi":"10.2196/57719","title":"Predicting Escalation of Care for Childhood Pneumonia Using Machine Learning: Retrospective Analysis and Model Development","year":2025,"lang":"en","type":"article","venue":"JMIRx Med","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Pneumonia; De-escalation; Medicine; Computer science; Intensive care medicine; Internal medicine","score_opus":0.01078925169670638,"score_gpt":0.2907657125852809,"score_spread":0.27997646088857453,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408127928","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98364156,0.00011233603,0.015059707,0.00022556234,0.000039755,0.0004648137,0.00001128439,0.00004814837,0.00039681004],"genre_scores_gemma":[0.9973276,0.0000070588485,0.002070328,0.000043266606,0.000020591826,0.000037592265,0.00003742219,0.0000096890135,0.00044644353],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99927527,0.000021540738,0.00025270207,0.00020146836,0.00012547115,0.00012354739],"domain_scores_gemma":[0.9994804,0.000039171937,0.00010955406,0.00010393987,0.00021555767,0.00005136458],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000116836876,0.00010061109,0.00031958512,0.0003640218,0.00022236351,0.000008451231,0.00002508869,0.00008008124,0.0000034116376],"category_scores_gemma":[0.00017549082,0.00008822101,0.00009891994,0.0005187073,0.0000288165,0.000038757156,0.000026952945,0.00014032757,1.4644735e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027203647,0.00006337333,0.94604415,0.00014117283,0.00055417616,5.0520146e-7,0.0020873735,0.0041980185,0.045785762,0.00004431999,0.0000019866618,0.0010519659],"study_design_scores_gemma":[0.00082302745,0.0000994839,0.76032233,0.00009879883,0.001010013,0.0000021612154,0.0002837376,0.22940984,0.0075872974,0.000036459853,0.00025216362,0.00007471341],"about_ca_topic_score_codex":0.000020877023,"about_ca_topic_score_gemma":0.00013275359,"teacher_disagreement_score":0.22521181,"about_ca_system_score_codex":0.00013607972,"about_ca_system_score_gemma":0.00016688628,"threshold_uncertainty_score":0.35975483},"labels":[],"label_agreement":null},{"id":"W4408127938","doi":"10.2196/71098","title":"Authors’ Response to Peer Reviews of “Predicting Escalation of Care for Childhood Pneumonia Using Machine Learning: Retrospective Analysis and Model Development”","year":2025,"lang":"en","type":"article","venue":"JMIRx Med","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Pneumonia; Medicine; Computer science; Internal medicine","score_opus":0.02038921620244906,"score_gpt":0.33634990941854376,"score_spread":0.3159606932160947,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408127938","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9827467,0.00019565389,0.01493305,0.0009547501,0.000048345202,0.00088901626,0.000021542304,0.000029140378,0.0001817897],"genre_scores_gemma":[0.9927585,0.000014410578,0.005010769,0.000068074245,0.000016550575,0.000055623394,0.00002665915,0.000011622232,0.002037756],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99879885,0.0001169774,0.00050112593,0.00024247248,0.0002019255,0.00013864711],"domain_scores_gemma":[0.99893254,0.00010171109,0.00021428928,0.00017294344,0.0004935616,0.00008498358],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008019431,0.00012745676,0.00059714256,0.0006371643,0.00016937086,0.0000068499876,0.00004215109,0.00009798877,0.0000059914228],"category_scores_gemma":[0.0019856433,0.00010844124,0.00015670004,0.0009845704,0.00003059973,0.0000407322,0.00004092745,0.00016265323,3.2287352e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003675906,0.00008521077,0.65983796,0.0003196217,0.00044748944,6.792545e-7,0.0068517346,0.0022342333,0.32809335,0.000027572984,0.00003106782,0.0017035013],"study_design_scores_gemma":[0.0010797112,0.00030438506,0.93393534,0.0004178293,0.0014690522,0.000002912888,0.00044705087,0.038050774,0.017157624,0.000024763467,0.006973157,0.00013739553],"about_ca_topic_score_codex":0.000017285975,"about_ca_topic_score_gemma":0.00007773541,"teacher_disagreement_score":0.31093574,"about_ca_system_score_codex":0.00013684126,"about_ca_system_score_gemma":0.00019440097,"threshold_uncertainty_score":0.44221056},"labels":[],"label_agreement":null},{"id":"W4408127943","doi":"10.2196/71369","title":"Peer Review of “Predicting Escalation of Care for Childhood Pneumonia Using Machine Learning: Retrospective Analysis and Model Development”","year":2025,"lang":"en","type":"article","venue":"JMIRx Med","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Pneumonia; Medicine; Internal medicine","score_opus":0.015903707393996783,"score_gpt":0.3200603529741968,"score_spread":0.30415664558020006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408127943","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9840517,0.003023566,0.009316753,0.0014804726,0.000051824696,0.0008714491,0.000032815937,0.000042297565,0.0011291282],"genre_scores_gemma":[0.9967061,0.00022248592,0.0017950047,0.0001096347,0.000015030479,0.000029097164,0.00007460893,0.000009177453,0.0010388166],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990593,0.00003125769,0.00037819866,0.00017804724,0.00024946217,0.00010372444],"domain_scores_gemma":[0.9987055,0.0000472502,0.00020214905,0.00012378884,0.00087819627,0.000043095675],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003124452,0.00009996525,0.000492869,0.00029866034,0.00012434431,0.0000037344207,0.000031030602,0.000068233225,0.0000064393444],"category_scores_gemma":[0.0008155403,0.000084737636,0.0001406975,0.0006627556,0.000033340526,0.0000383105,0.000027204507,0.00013817144,1.07533545e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002357541,0.00008707757,0.9506453,0.004224849,0.00085047516,5.2147084e-7,0.0015826912,0.0006943843,0.039954275,0.00005271161,0.000034779303,0.0018493521],"study_design_scores_gemma":[0.0013313385,0.00018014146,0.9028285,0.004284759,0.003784482,0.0000049149644,0.00032508947,0.07360372,0.011046781,0.00004575052,0.002408399,0.00015613879],"about_ca_topic_score_codex":0.000014910926,"about_ca_topic_score_gemma":0.00003868464,"teacher_disagreement_score":0.07290933,"about_ca_system_score_codex":0.00008623852,"about_ca_system_score_gemma":0.00017720337,"threshold_uncertainty_score":0.34555003},"labels":[],"label_agreement":null},{"id":"W4408127944","doi":"10.2196/71100","title":"Peer Review of “Predicting Escalation of Care for Childhood Pneumonia Using Machine Learning: Retrospective Analysis and Model Development”","year":2025,"lang":"en","type":"article","venue":"JMIRx Med","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"De-escalation; Pneumonia; Computer science; Psychology; Medicine; Intensive care medicine; Internal medicine","score_opus":0.015903707393996783,"score_gpt":0.3200603529741968,"score_spread":0.30415664558020006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408127944","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9840517,0.003023566,0.009316753,0.0014804726,0.000051824696,0.0008714491,0.000032815937,0.000042297565,0.0011291282],"genre_scores_gemma":[0.9967061,0.00022248592,0.0017950047,0.0001096347,0.000015030479,0.000029097164,0.00007460893,0.000009177453,0.0010388166],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990593,0.00003125769,0.00037819866,0.00017804724,0.00024946217,0.00010372444],"domain_scores_gemma":[0.9987055,0.0000472502,0.00020214905,0.00012378884,0.00087819627,0.000043095675],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003124452,0.00009996525,0.000492869,0.00029866034,0.00012434431,0.0000037344207,0.000031030602,0.000068233225,0.0000064393444],"category_scores_gemma":[0.0008155403,0.000084737636,0.0001406975,0.0006627556,0.000033340526,0.0000383105,0.000027204507,0.00013817144,1.07533545e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002357541,0.00008707757,0.9506453,0.004224849,0.00085047516,5.2147084e-7,0.0015826912,0.0006943843,0.039954275,0.00005271161,0.000034779303,0.0018493521],"study_design_scores_gemma":[0.0013313385,0.00018014146,0.9028285,0.004284759,0.003784482,0.0000049149644,0.00032508947,0.07360372,0.011046781,0.00004575052,0.002408399,0.00015613879],"about_ca_topic_score_codex":0.000014910926,"about_ca_topic_score_gemma":0.00003868464,"teacher_disagreement_score":0.07290933,"about_ca_system_score_codex":0.00008623852,"about_ca_system_score_gemma":0.00017720337,"threshold_uncertainty_score":0.34555003},"labels":[],"label_agreement":null},{"id":"W4408147905","doi":"10.1101/2025.03.03.25323223","title":"Serotype-specific pneumococcal invasiveness: a global meta-analysis of paired estimates of disease incidence and carriage prevalence","year":2025,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Centers for Disease Control and Prevention; Wellcome Trust","keywords":"Carriage; Serotype; Incidence (geometry); Pneumococcal disease; Meta-analysis; Disease; Medicine; Biology; Virology; Streptococcus pneumoniae; Microbiology; Internal medicine; Pathology; Mathematics","score_opus":0.07092647977580031,"score_gpt":0.33401364992653704,"score_spread":0.26308717015073674,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408147905","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9890277,0.007700945,0.00053451967,0.0004456981,0.00016334449,0.00075842516,0.0011375716,0.00005313042,0.00017867176],"genre_scores_gemma":[0.9985944,0.0007944234,0.00018650411,0.000073797186,0.000024869903,0.00016884407,0.00004193839,0.000010343488,0.00010487168],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9977448,0.00021741091,0.00074920285,0.00065963855,0.00042642272,0.00020250726],"domain_scores_gemma":[0.9975553,0.00030233708,0.00045134436,0.0010448077,0.00039520639,0.00025101172],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00042469494,0.00034859648,0.00196295,0.00039243957,0.000060318074,0.000017011207,0.00027367994,0.00021456806,0.00016301498],"category_scores_gemma":[0.0005564056,0.00027238924,0.0012481251,0.0009188828,0.0003545716,0.00005052077,0.00049401715,0.00029702767,0.0000019192973],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000112567104,0.00021653077,0.9416958,0.0040043923,0.039175756,0.00006111961,0.00011854517,0.0012022528,0.013151652,0.00016836917,0.000011747088,0.00008123631],"study_design_scores_gemma":[0.000189432,0.00006722431,0.80486894,0.00028708568,0.1917428,0.0000038349044,0.000017868691,0.0005651575,0.0016315731,0.00038045802,0.00007971852,0.00016593149],"about_ca_topic_score_codex":0.00009709469,"about_ca_topic_score_gemma":0.00006265145,"teacher_disagreement_score":0.15256703,"about_ca_system_score_codex":0.00006857618,"about_ca_system_score_gemma":0.0005287269,"threshold_uncertainty_score":0.9999728},"labels":[],"label_agreement":null},{"id":"W4408160466","doi":"10.1089/cbr.2024.0202","title":"Diagnostic Value of <sup>99m</sup> Tc-Ubiquicidin Scintigraphy in Differentiating Bacterial from Nonbacterial Pneumonia","year":2025,"lang":"en","type":"article","venue":"Cancer Biotherapy and Radiopharmaceuticals","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital","funders":"","keywords":"Pneumonia; Medicine; Scintigraphy; Bacterial pneumonia; Value (mathematics); Nuclear medicine; Radiology; Internal medicine; Computer science","score_opus":0.01457050027567186,"score_gpt":0.3390874867133751,"score_spread":0.3245169864377032,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408160466","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9919802,0.004351864,0.00009828038,0.0017460322,0.00090529735,0.0005866624,0.0001365259,0.0000477069,0.00014742343],"genre_scores_gemma":[0.99069256,0.006991182,0.000056270615,0.0015492581,0.0005504541,0.00008584819,0.000014233732,0.000024351066,0.000035860452],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983519,0.00017244735,0.0005562737,0.00041775225,0.00015646977,0.00034519646],"domain_scores_gemma":[0.9989402,0.0004901237,0.00010717159,0.0002312191,0.000053755968,0.00017749946],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016861677,0.00026549376,0.0006522276,0.00033481722,0.00011189518,0.00003850421,0.0001063362,0.00022435986,0.00042005468],"category_scores_gemma":[0.000097570344,0.00021805766,0.00015814957,0.00048321942,0.00029400355,0.00009379144,0.00003464911,0.00031361656,0.0000028128416],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045397168,0.00022252933,0.23844783,0.00016385931,0.0002731617,0.000014643213,0.000306401,0.000031432282,0.75424266,0.00016220647,0.000057132347,0.0056241453],"study_design_scores_gemma":[0.010505586,0.00030832418,0.7606143,0.0012873812,0.0004499979,0.0000100475345,0.00007668769,0.0022913737,0.20460801,0.00022079147,0.01923154,0.00039599038],"about_ca_topic_score_codex":0.00018354267,"about_ca_topic_score_gemma":0.000017228405,"teacher_disagreement_score":0.5496347,"about_ca_system_score_codex":0.0000831693,"about_ca_system_score_gemma":0.00016531421,"threshold_uncertainty_score":0.8892133},"labels":[],"label_agreement":null},{"id":"W4408199896","doi":"10.1016/j.vaccine.2025.126985","title":"Cost-effectiveness analysis of 21-valent pneumococcal conjugated vaccine among adults in Canada","year":2025,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"British Columbia Children's Hospital; McGill University Health Centre; Toronto Rehabilitation Institute; Public Health Ontario; Institute for Work & Health; Public Health Agency of Canada","funders":"","keywords":"Pneumococcal infections; Pneumococcal disease; Pneumococcal vaccine; Medicine; Cost analysis; Immunology; Streptococcus pneumoniae; Virology; Intensive care medicine; Environmental health; Biology; Microbiology; Antibiotics; Operations research","score_opus":0.012551539719671299,"score_gpt":0.28432917255129364,"score_spread":0.2717776328316223,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408199896","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99732786,0.00013365745,0.00006992281,0.0006168573,0.00026014852,0.00093656377,0.000040392915,0.000035503042,0.00057910674],"genre_scores_gemma":[0.9993109,0.0000519631,0.0000035338421,0.00027274896,0.000023573322,0.00011170602,0.00006669402,0.00001279276,0.00014606491],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99846625,0.0001346307,0.0005756078,0.00033853043,0.00019158574,0.0002933856],"domain_scores_gemma":[0.99884987,0.00023720463,0.00012794396,0.00040856935,0.00023530156,0.00014109755],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022756048,0.00020391068,0.00087068323,0.0009380019,0.000052434687,0.0000052176524,0.00009990109,0.00009764603,0.00015214282],"category_scores_gemma":[0.00017144198,0.0001703327,0.00016913009,0.0031722437,0.000009189491,0.000050239796,0.00005066213,0.00026469777,0.0000026641655],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004276112,0.00025373287,0.9750858,0.00020493638,0.0010476409,0.00007650219,0.00003586192,0.0017724462,0.019780967,0.00003108055,0.00015977128,0.0011236245],"study_design_scores_gemma":[0.004245043,0.00013686955,0.9805391,0.00037347813,0.0012261324,0.000004657566,0.00011172078,0.003860682,0.008192683,0.0000046378855,0.0011739995,0.00013100445],"about_ca_topic_score_codex":0.51025754,"about_ca_topic_score_gemma":0.88727146,"teacher_disagreement_score":0.37701395,"about_ca_system_score_codex":0.0006315165,"about_ca_system_score_gemma":0.0008541771,"threshold_uncertainty_score":0.6945966},"labels":[],"label_agreement":null},{"id":"W4408511434","doi":"10.1016/s1473-3099(24)00740-0","title":"Future immunisation strategies to prevent Streptococcus pneumoniae infections in children and adults","year":2025,"lang":"en","type":"review","venue":"The Lancet Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital","funders":"Michael Smith Health Research BC; Canadian Immunization Research Network; BC Children's Hospital; Children's Hospital Foundation","keywords":"Streptococcus pneumoniae; Medicine; Immunology; Microbiology; Biology; Antibiotics","score_opus":0.012175864057707552,"score_gpt":0.3198308315967058,"score_spread":0.30765496753899824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408511434","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.024059128,0.96780115,0.0000104753935,0.0005329656,0.00047940033,0.0047968864,0.0004351788,0.00041345137,0.0014713507],"genre_scores_gemma":[0.012745043,0.983795,0.0000010548646,0.0003666446,0.0011699239,0.0015355642,0.00023435456,0.000041933312,0.00011051919],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99805766,0.0003542843,0.00052657933,0.00048581275,0.00018277936,0.0003928573],"domain_scores_gemma":[0.9985466,0.00023643272,0.00020291627,0.0007596113,0.00007623908,0.00017820534],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00015368962,0.0004954192,0.0014808152,0.0005530252,0.00031833406,0.000132699,0.00018210315,0.00026412727,0.00003197415],"category_scores_gemma":[0.00014107555,0.0003265151,0.00036291333,0.0009702204,0.0001003607,0.00012498474,0.00015303519,0.0007227111,0.000036706002],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021861953,0.0013738873,0.08260095,0.01298522,0.0009065793,0.000016409338,0.0002835103,0.00006658585,0.000003289015,0.0009142894,0.001313632,0.8995138],"study_design_scores_gemma":[0.0015224313,0.00072301074,0.2506865,0.022736419,0.0036947832,0.00038945518,0.0001882549,0.0000033670785,4.6647696e-7,0.00046797656,0.71883416,0.0007532055],"about_ca_topic_score_codex":0.000118400494,"about_ca_topic_score_gemma":0.0002788523,"teacher_disagreement_score":0.89876056,"about_ca_system_score_codex":0.00022897801,"about_ca_system_score_gemma":0.00078391016,"threshold_uncertainty_score":0.9999187},"labels":[],"label_agreement":null},{"id":"W4408630838","doi":"10.1017/s0950268825000305","title":"A new approach to define the optimal immunization strategy against pneumococcal disease: the example of Canada","year":2025,"lang":"en","type":"article","venue":"Epidemiology and Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval; Institut National de Santé Publique du Québec; Université de Sherbrooke","funders":"","keywords":"Pneumococcal disease; Immunization; Disease; Medicine; Pneumococcal infections; Streptococcus pneumoniae; Immunology; Virology; Biology; Microbiology; Antibody; Antibiotics; Pathology","score_opus":0.03731801399084039,"score_gpt":0.30050126368964625,"score_spread":0.26318324969880585,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408630838","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92777634,0.00051896967,0.04091962,0.014996427,0.00039532167,0.0006204602,0.000005639992,0.000035614314,0.014731607],"genre_scores_gemma":[0.99504864,0.00015888514,0.000061167666,0.003499765,0.00009638182,0.00004337444,0.00002251757,0.000004900592,0.0010643367],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999034,0.0003225168,0.00027109476,0.0001657729,0.000044178403,0.00016243583],"domain_scores_gemma":[0.9990564,0.00047068464,0.000074822514,0.00024062699,0.000058389352,0.00009910021],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006599597,0.00009223739,0.00021173996,0.00005940959,0.00032033498,0.0000040457267,0.000046493646,0.00007363611,0.000015421456],"category_scores_gemma":[0.00093900895,0.00005067472,0.000047322206,0.00030143643,0.00009298227,0.00003135312,0.00003519116,0.00021406652,0.0000016288407],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026054773,0.00021677004,0.77309895,0.00018110625,0.00035427127,0.0000021496885,0.00022674528,0.062672675,0.009021191,0.08294838,0.043493222,0.027523987],"study_design_scores_gemma":[0.00024025136,0.00007756453,0.9260019,0.000026141206,0.000085110834,0.000013446889,0.000032258027,0.0021145237,0.00007448244,0.00047716682,0.070807174,0.00005000367],"about_ca_topic_score_codex":0.09573945,"about_ca_topic_score_gemma":0.01626854,"teacher_disagreement_score":0.15290293,"about_ca_system_score_codex":0.000051470954,"about_ca_system_score_gemma":0.00057582895,"threshold_uncertainty_score":0.9102821},"labels":[],"label_agreement":null},{"id":"W4408845928","doi":"10.1093/jac/dkaf085","title":"Comparing serotype coverage of pneumococcal vaccines with PCV21 (V116), a new 21-valent conjugate pneumococcal vaccine, and the epidemiology of its eight unique <i>Streptococcus pneumoniae</i> serotypes (15A, 15C, 16F, 23A, 23B, 24F, 31 and 35B) causing invasive pneumococcal disease in adult patients in Canada: SAVE study, 2018–21","year":2025,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; University of Manitoba","funders":"Merck Canada; Public Health Agency; Public Health Agency of Canada; University of Manitoba","keywords":"Serotype; Streptococcus pneumoniae; Pneumococcal conjugate vaccine; Virology; Pneumococcal infections; Conjugate vaccine; Medicine; Streptococcaceae; Conjugate; Microbiology; Pneumococcal vaccine; Immunology; Biology; Antibiotics","score_opus":0.011350155273186844,"score_gpt":0.24931269804644254,"score_spread":0.2379625427732557,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408845928","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99222785,0.0003645624,0.0000365258,0.0048217513,0.00027269794,0.002190353,0.00003837578,0.000009895726,0.000037962225],"genre_scores_gemma":[0.9958446,0.0024165218,0.000030910214,0.0014994626,0.0000951591,0.000020580295,0.000008926867,0.00004471662,0.00003909619],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99612594,0.0005454912,0.001994247,0.00049981865,0.00029514104,0.00053933775],"domain_scores_gemma":[0.9966345,0.0007593689,0.0012694832,0.00037348052,0.00060754403,0.00035564488],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00067526195,0.00054262485,0.0020957473,0.00053922203,0.0001288136,0.000022241393,0.0002448825,0.00018437077,0.000010492266],"category_scores_gemma":[0.00041728024,0.00037141048,0.00019353525,0.0006969424,0.00021294352,0.00023384226,0.00013208207,0.0009076772,3.8567111e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00475036,0.000883371,0.8917766,0.00048904266,0.00035366247,0.00015532706,0.0006106843,0.00082514767,0.09975259,0.000025271927,0.00015469824,0.00022321043],"study_design_scores_gemma":[0.022030765,0.0010147595,0.9591986,0.002337252,0.00029213988,0.0001292249,0.00018677811,0.0002375106,0.01408516,0.000046906167,0.0001313352,0.00030958356],"about_ca_topic_score_codex":0.03194636,"about_ca_topic_score_gemma":0.17015126,"teacher_disagreement_score":0.1382049,"about_ca_system_score_codex":0.0003929449,"about_ca_system_score_gemma":0.0029170036,"threshold_uncertainty_score":0.99987376},"labels":[],"label_agreement":null},{"id":"W4409115460","doi":"10.21203/rs.3.rs-6313580/v1","title":"Within-host pneumococcal serotype 3 genetic diversity and evolution during a one-year prolonged carriage episode in a healthy adult","year":2025,"lang":"en","type":"preprint","venue":"Research Square","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Carriage; Serotype; Host (biology); Biology; Genetic diversity; Diversity (politics); Virology; Medicine; Genetics; Environmental health; Population; Political science","score_opus":0.045208282835445306,"score_gpt":0.35662725967721765,"score_spread":0.31141897684177233,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409115460","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936147,0.00046858395,0.000017708322,0.0019953153,0.00020967516,0.002996191,0.00010102956,0.00010185512,0.0004949688],"genre_scores_gemma":[0.9985597,0.000405532,0.000069283684,0.000066981476,0.0002103988,0.00033337367,0.000022869603,0.000023641776,0.0003081864],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99656636,0.0007056944,0.00040480457,0.0008184563,0.00081679516,0.00068792206],"domain_scores_gemma":[0.99808216,0.00013231557,0.00009311051,0.00064388895,0.0006645539,0.0003839886],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0008212348,0.0002624413,0.0005364544,0.0010577601,0.0009931106,0.00004357326,0.00020655549,0.00056834775,0.000024108209],"category_scores_gemma":[0.00073715753,0.00026008004,0.000119546814,0.000682514,0.00023910157,0.00005879139,0.002749946,0.0030118155,0.000023040506],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010153066,0.00033228414,0.9858125,0.0056186668,0.00008754832,0.00016789319,0.001913391,0.00011384911,0.004741441,0.00012057678,0.000015387644,0.0000611453],"study_design_scores_gemma":[0.0019420153,0.0007051282,0.9931083,0.0025459977,0.000051165378,0.000021438535,0.00043968964,0.0004887937,0.000172082,0.00029216698,0.000037156675,0.00019611508],"about_ca_topic_score_codex":0.0034727878,"about_ca_topic_score_gemma":0.0041779894,"teacher_disagreement_score":0.0072957403,"about_ca_system_score_codex":0.0011302072,"about_ca_system_score_gemma":0.0009874356,"threshold_uncertainty_score":0.99998516},"labels":[],"label_agreement":null},{"id":"W4409148457","doi":"10.1080/14760584.2025.2488495","title":"Economic analysis of 15-valent and 20-valent pneumococcal conjugate vaccines among older adults in Ontario, Canada","year":2025,"lang":"en","type":"article","venue":"Expert Review of Vaccines","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Ontario; University of Toronto; University Health Network","funders":"University of Toronto","keywords":"Medicine; Herd immunity; Vaccination; Pneumococcal conjugate vaccine; Pneumococcal pneumonia; Incidence (geometry); Cost-effectiveness analysis; Pediatrics; Cost effectiveness; Quality-adjusted life year; Immunology; Streptococcus pneumoniae","score_opus":0.006384788705572591,"score_gpt":0.2766853084961075,"score_spread":0.27030051979053493,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409148457","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9517141,0.044901326,0.0000022550475,0.0016907004,0.00029468222,0.0006590882,0.00001550189,0.000011111939,0.0007112233],"genre_scores_gemma":[0.9665957,0.031569723,0.000016183909,0.0012012565,0.000039515166,0.000087100336,0.000029189632,0.000011065597,0.0004502394],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99830455,0.000065939,0.0009714124,0.00033319765,0.00012536839,0.00019954095],"domain_scores_gemma":[0.9989993,0.000093664006,0.00025899758,0.00040612006,0.00013340786,0.000108485736],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001865217,0.00022886416,0.0012682145,0.00039599495,0.000038305283,0.0000048321126,0.000106169085,0.000070468916,0.00051949883],"category_scores_gemma":[0.0000732148,0.00017484353,0.00025522098,0.00046077234,0.000028946388,0.00006606997,0.00006217919,0.00015351696,0.0000010718027],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036226742,0.00014673489,0.9884823,0.0029544686,0.00069088914,0.000012129881,0.00019161779,0.000030967563,0.0011624421,0.000016307891,0.0047507137,0.0015251803],"study_design_scores_gemma":[0.0010562974,0.00007000086,0.9712983,0.008211686,0.0008382116,0.00000675871,0.00010245357,0.00013139634,0.000946063,0.0000018490754,0.017196294,0.00014069295],"about_ca_topic_score_codex":0.6711556,"about_ca_topic_score_gemma":0.9713919,"teacher_disagreement_score":0.30023637,"about_ca_system_score_codex":0.00026888377,"about_ca_system_score_gemma":0.00069108856,"threshold_uncertainty_score":0.71299124},"labels":[],"label_agreement":null},{"id":"W4409149630","doi":"10.1080/21645515.2025.2482285","title":"Clinical and evidence-based considerations for choosing a pneumococcal conjugate vaccine in India: A narrative review","year":2025,"lang":"en","type":"review","venue":"Human Vaccines & Immunotherapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Care Foundation","funders":"","keywords":"Pneumococcal conjugate vaccine; Narrative; Medicine; Pneumococcal infections; Streptococcus pneumoniae; Immunology; Narrative review; Vaccination; Intensive care medicine; Virology; Biology; Microbiology; Antibiotics","score_opus":0.15105694101496303,"score_gpt":0.4609123827506655,"score_spread":0.30985544173570245,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409149630","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000168951,0.9913323,0.00004652299,0.0015563195,0.00037793128,0.0062983306,0.000037358703,0.000101378064,0.00008091473],"genre_scores_gemma":[0.00034555717,0.9906008,0.0001752875,0.0068157674,0.00028640497,0.0012985012,0.00007811784,0.00009180657,0.00030771233],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9953448,0.0007232925,0.0024767306,0.00080786727,0.00018236725,0.00046491402],"domain_scores_gemma":[0.9945143,0.003394591,0.0007509426,0.0008046187,0.00038592535,0.0001496535],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0011967643,0.0007609539,0.00387493,0.00066526205,0.0004855234,0.00009410816,0.00017401592,0.00063737074,0.00011000027],"category_scores_gemma":[0.0011034727,0.0006039093,0.00095869356,0.00066017325,0.00012078987,0.00014471565,0.00007246586,0.0011850635,0.000009184864],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023360174,0.0015853837,0.006755679,0.41926223,0.0030707514,0.0001483739,0.0004944821,0.0000016309555,0.0002837296,0.001380707,0.002344081,0.56443936],"study_design_scores_gemma":[0.0033142806,0.00069686637,0.004127105,0.3332023,0.004831438,0.00016456758,0.000025489897,0.000012070685,0.0000023328182,0.00019892018,0.6528486,0.0005760359],"about_ca_topic_score_codex":0.000007584392,"about_ca_topic_score_gemma":0.0000395413,"teacher_disagreement_score":0.6505045,"about_ca_system_score_codex":0.00017207242,"about_ca_system_score_gemma":0.0019239922,"threshold_uncertainty_score":0.99964124},"labels":[],"label_agreement":null},{"id":"W4409318679","doi":"10.1101/2025.04.10.647998","title":"Regulation of airway fumarate by host and pathogen promotes S. <i>aureus</i> pneumonia","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases; School of Medicine, Shanghai Jiao Tong University; National Health and Medical Research Council; International Microbiome Centre, University of Calgary; Canterbury Medical Research Foundation; Weill Cornell Medical College; Alberta Innovates; National Science Foundation; Shanghai Jiao Tong University; National Institutes of Health; Yale University; U.S. Department of Agriculture","keywords":"Pathogen; Pneumonia; Microbiology; Airway; Staphylococcus aureus; Host (biology); Virology; Biology; Medicine; Chemistry; Bacteria; Genetics; Internal medicine; Surgery","score_opus":0.008777014767678552,"score_gpt":0.2241130716909517,"score_spread":0.21533605692327315,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409318679","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99303716,0.0018941974,0.00032939037,0.0011023142,0.0007023343,0.001385221,0.0011336097,0.0003253685,0.00009038431],"genre_scores_gemma":[0.9980728,0.00056078215,0.0004824701,0.00035642198,0.00019995696,0.00016504295,0.0000023636865,0.0000725377,0.000087642045],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975278,0.00014717125,0.0006965744,0.0008666183,0.00036133165,0.00040050407],"domain_scores_gemma":[0.9974462,0.00007164376,0.0004949053,0.0011001761,0.000604279,0.00028278702],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00044537894,0.0005337248,0.00085021276,0.0003744695,0.00017352449,0.00007097235,0.00020656548,0.0007209103,0.000029442852],"category_scores_gemma":[0.00021622122,0.00052062306,0.00018460146,0.00053673564,0.0002235768,0.00011007986,0.0003256677,0.0007265338,0.000013444352],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002965009,0.00021700897,0.023321895,0.0012195301,0.00021156119,0.000014947502,0.000013218041,0.0000065655945,0.97416663,0.00013544816,0.0006593118,0.0000042474103],"study_design_scores_gemma":[0.00090491166,0.00022602851,0.30342826,0.001469739,0.00056156295,1.0659451e-7,0.000002850529,0.0002070256,0.6728707,0.0000033558422,0.019736174,0.00058930693],"about_ca_topic_score_codex":0.000033238295,"about_ca_topic_score_gemma":0.0000020447849,"teacher_disagreement_score":0.30129594,"about_ca_system_score_codex":0.00015257124,"about_ca_system_score_gemma":0.00075865275,"threshold_uncertainty_score":0.9997245},"labels":[],"label_agreement":null},{"id":"W4409410323","doi":"10.1007/s40121-025-01151-0","title":"Indirect Comparison of PCV20 Immunogenicity with PCV10 in Pediatric 3 + 1 and 2 + 1 Schedules","year":2025,"lang":"en","type":"article","venue":"Infectious Diseases and Therapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer","keywords":"Immunogenicity; Medicine; Pediatrics; Immunology; Immune system","score_opus":0.010782859279545039,"score_gpt":0.2907107568027591,"score_spread":0.27992789752321406,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409410323","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.985994,0.012883124,0.000029155113,0.00012315874,0.00005887144,0.00025652946,0.000008201017,0.000043791864,0.0006031854],"genre_scores_gemma":[0.9947166,0.004989911,0.000005960185,0.00020308136,0.00003306374,0.000025847487,0.000002753798,0.0000074673057,0.000015315356],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994452,0.00003915349,0.00017254728,0.00015601942,0.00007247484,0.00011463429],"domain_scores_gemma":[0.999644,0.000070285096,0.000058182268,0.00011752442,0.00004573825,0.00006430385],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000044905675,0.00011156851,0.00030514604,0.00025123183,0.000085027255,0.000014758326,0.00002147907,0.000056988145,0.000011673904],"category_scores_gemma":[0.000018939074,0.00008065539,0.000043701362,0.00035606005,0.000102177204,0.00004371294,0.000014769915,0.000115342635,5.553633e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017987288,0.00055379485,0.98771787,0.00009797263,0.00010346879,0.000004218343,0.00008394944,0.000010256178,0.0011218076,0.00020574048,0.000009633747,0.009911405],"study_design_scores_gemma":[0.0025784504,0.00058739784,0.99487406,0.00005716421,0.00011662277,0.000010963996,0.000056424513,0.00004005975,0.00055149366,0.0003143193,0.0007312007,0.00008185299],"about_ca_topic_score_codex":0.00008486315,"about_ca_topic_score_gemma":0.00006193379,"teacher_disagreement_score":0.009829552,"about_ca_system_score_codex":0.000017012631,"about_ca_system_score_gemma":0.000098189026,"threshold_uncertainty_score":0.3289031},"labels":[],"label_agreement":null},{"id":"W4409981668","doi":"10.1080/13696998.2025.2499333","title":"Cost-effectiveness analysis of implementing 20-valent pneumococcal conjugate vaccine into the Romanian pediatric national immunization program","year":2025,"lang":"en","type":"article","venue":"Journal of Medical Economics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer","keywords":"Medicine; Pneumococcal conjugate vaccine; Immunization program; Immunization; Pediatrics; Conjugate; Vaccination; Romanian; Pneumococcal vaccination; Streptococcus pneumoniae; Virology; Immunology; Antibody; Antibiotics","score_opus":0.024306054771491812,"score_gpt":0.3696598415264782,"score_spread":0.34535378675498635,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409981668","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9910955,0.00019932697,0.0010383342,0.0064224154,0.0003552695,0.00040973132,0.000006698089,0.000011059908,0.0004617077],"genre_scores_gemma":[0.9982434,0.00081797334,0.00007953882,0.000480075,0.00030484077,0.000023760469,0.000019054334,0.000008390351,0.000022990867],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982322,0.00015775839,0.0009742206,0.00011948163,0.00035042327,0.00016590998],"domain_scores_gemma":[0.99819624,0.0004376272,0.0005951626,0.00014167452,0.00048398116,0.0001453026],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026981635,0.00011107128,0.0005160665,0.00066850963,0.00014286196,0.000025916908,0.00021247189,0.00012672659,0.0001263896],"category_scores_gemma":[0.0006660702,0.00007547241,0.0003431788,0.0007942283,0.000060471288,0.00009185639,0.000085048094,0.00040950198,0.0000018926403],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030967468,0.0015164732,0.9166675,0.00037380165,0.006976131,0.00002798769,0.00056174013,0.00665012,0.002221278,0.004321001,0.00056663045,0.05980767],"study_design_scores_gemma":[0.0038236564,0.00057511864,0.91455466,0.00014821163,0.004333769,0.000081820835,0.0003414307,0.031543262,0.00047829575,0.00039251675,0.043594662,0.00013257461],"about_ca_topic_score_codex":0.000020112948,"about_ca_topic_score_gemma":0.00009421829,"teacher_disagreement_score":0.059675097,"about_ca_system_score_codex":0.0002480486,"about_ca_system_score_gemma":0.00092029537,"threshold_uncertainty_score":0.30776757},"labels":[],"label_agreement":null},{"id":"W4410035752","doi":"10.1007/s10096-025-05114-8","title":"Complicated pneumococcal pneumonia in the era of higher-valent pneumococcal conjugate vaccines: a systematic literature review and meta-analysis, 2001–2022","year":2025,"lang":"en","type":"review","venue":"European Journal of Clinical Microbiology & Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"INOVIO Pharmaceuticals","keywords":"Medical microbiology; Pneumonia; Pneumococcal pneumonia; Medicine; Meta-analysis; Streptococcus pneumoniae; Pneumococcal conjugate vaccine; Pneumococcal infections; Intensive care medicine; Immunology; Internal medicine; Microbiology; Antibiotics; Biology","score_opus":0.06265930205218859,"score_gpt":0.39650654562639337,"score_spread":0.3338472435742048,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410035752","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00061161583,0.9941295,0.000007134865,0.001337085,0.00042167288,0.0026761203,0.0005458753,0.00003744503,0.00023356716],"genre_scores_gemma":[0.004741014,0.991241,0.000005273353,0.0033023006,0.00023014468,0.00009458391,0.00016954337,0.000055930203,0.00016025822],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9763231,0.015234858,0.007058141,0.0007300019,0.00019346917,0.00046039507],"domain_scores_gemma":[0.9888181,0.0041820593,0.0048174523,0.0010684907,0.0007265757,0.00038733208],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0048729647,0.0009024894,0.014589409,0.0008814096,0.00014445206,0.00006467725,0.0007528917,0.00037081822,0.00014777447],"category_scores_gemma":[0.0022578435,0.00045964337,0.008625829,0.002330162,0.00045872963,0.00008706832,0.00022836922,0.0032898185,0.000027926619],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000099515506,0.0038584098,0.0040912316,0.7441501,0.2384429,0.0023981214,0.000056933997,0.0000068270942,0.00023546559,0.00004162837,0.002736107,0.0038827793],"study_design_scores_gemma":[0.0011079997,0.0013104242,0.0095214,0.07700754,0.75781053,0.0043515684,0.0000070332594,3.1371022e-7,2.024726e-7,0.000008333932,0.14849252,0.00038214953],"about_ca_topic_score_codex":0.0000015811927,"about_ca_topic_score_gemma":0.000006204206,"teacher_disagreement_score":0.6671425,"about_ca_system_score_codex":0.00007027388,"about_ca_system_score_gemma":0.0006138908,"threshold_uncertainty_score":0.99978554},"labels":[],"label_agreement":null},{"id":"W4410076993","doi":"10.1007/s00134-025-07912-2","title":"Corticosteroids for adult patients hospitalised with non-viral community-acquired pneumonia: a systematic review and meta-analysis","year":2025,"lang":"en","type":"review","venue":"Intensive Care Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital; McMaster University; University of Toronto","funders":"National Institute of General Medical Sciences","keywords":"Medicine; Pneumonia; Meta-analysis; Anesthesiology; Intensive care medicine; Pain medicine; MEDLINE; Community-acquired pneumonia; Viral pneumonia; Systematic review; Coronavirus disease 2019 (COVID-19); Internal medicine; Anesthesia; Infectious disease (medical specialty); Disease","score_opus":0.04309360685565561,"score_gpt":0.3514248687840978,"score_spread":0.3083312619284422,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410076993","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00003084587,0.98433316,0.00010179618,0.0018142767,0.00019203036,0.012740405,0.0005571873,0.000071970986,0.00015834694],"genre_scores_gemma":[0.00046062426,0.96293956,0.000015098933,0.029516364,0.00005517517,0.00443591,0.0017449893,0.00008423836,0.0007480149],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99591136,0.0006684198,0.0018708165,0.00063551223,0.0005031556,0.0004107348],"domain_scores_gemma":[0.9817982,0.0010478501,0.0011536232,0.001484344,0.014195794,0.00032022083],"candidate_categories":["metaepi_narrow","metaepi_broad"],"consensus_categories":[],"category_scores_codex":[0.0003540939,0.0010049808,0.016400684,0.00086792634,0.0002972995,0.000023862674,0.00029506086,0.00034176814,0.000031574287],"category_scores_gemma":[0.007244802,0.00051462743,0.0025343392,0.0013261294,0.00043429233,0.00006433549,0.00013175356,0.00070326997,0.0000067335477],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001424934,0.000055757966,0.00003331227,0.86556256,0.13220501,0.000036589812,0.0005192591,4.251175e-8,9.1080176e-7,0.0000032938892,0.0007683635,0.0008006802],"study_design_scores_gemma":[0.0010383918,0.0020705825,0.000029152938,0.2460714,0.740424,0.00008070977,0.0014934851,8.17369e-7,2.7176614e-7,0.0000011264972,0.008462948,0.00032714155],"about_ca_topic_score_codex":0.00008687879,"about_ca_topic_score_gemma":0.0000588502,"teacher_disagreement_score":0.61949116,"about_ca_system_score_codex":0.0002474878,"about_ca_system_score_gemma":0.00031172298,"threshold_uncertainty_score":0.9997305},"labels":[],"label_agreement":null},{"id":"W4410197603","doi":"10.1016/j.idnow.2025.105084","title":"Impact of delaying PCV20 implementation in France’s pediatric national immunization program: A population-based Markov model","year":2025,"lang":"en","type":"article","venue":"Infectious Diseases Now","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"Arena Pharmaceuticals; Pfizer","keywords":"Immunization; Markov chain; Population; Markov model; Immunization program; Computer science; Medicine; Environmental health; Machine learning","score_opus":0.008367779175188848,"score_gpt":0.3540787157950549,"score_spread":0.34571093661986607,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410197603","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957365,0.0001239096,0.0022631478,0.00011111355,0.00010412491,0.00083850947,0.00008271456,0.00014424456,0.00059577345],"genre_scores_gemma":[0.999017,0.000028017606,0.000085737454,0.00017953523,0.000058185655,0.00024716623,0.00034068566,0.000015762804,0.000027924234],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99891233,0.00005775324,0.00040491406,0.00019479344,0.00024627332,0.00018395638],"domain_scores_gemma":[0.9992125,0.00007930943,0.00014986923,0.00015160123,0.00033342425,0.00007329957],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009219198,0.00014626484,0.0002202128,0.00080057967,0.000116713476,0.000021576017,0.00004443837,0.00008015288,0.00006659457],"category_scores_gemma":[0.00013071795,0.00013846521,0.00020098743,0.0011640774,0.000022810524,0.00014236575,0.000015912265,0.00011873479,0.0000037970885],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029738381,0.00082945393,0.94899416,0.00014129348,0.00005906884,0.0000016414439,0.000018648834,0.045581833,0.00037439345,0.00006503508,0.00013934197,0.0037654047],"study_design_scores_gemma":[0.0020351217,0.00020268299,0.94333583,0.000048021968,0.0001539182,0.000002256404,0.000007832134,0.05365804,0.000020635183,0.00041933608,0.000013765548,0.00010254146],"about_ca_topic_score_codex":0.00036038118,"about_ca_topic_score_gemma":0.0001406025,"teacher_disagreement_score":0.008076206,"about_ca_system_score_codex":0.00044338638,"about_ca_system_score_gemma":0.0010071854,"threshold_uncertainty_score":0.56464475},"labels":[],"label_agreement":null},{"id":"W4410352779","doi":"10.1016/s2352-4642(25)00094-x","title":"Predicting paediatric pneumonia severity in the emergency department: a multinational prospective cohort study of the Pediatric Emergency Research Network","year":2025,"lang":"en","type":"article","venue":"The Lancet Child & Adolescent Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; University of California, Davis; Cincinnati Children's Hospital Medical Center","keywords":"Emergency department; Medicine; Prospective cohort study; Pneumonia; Emergency medicine; Medical emergency; Cohort study; Severity of illness; Psychiatry; Surgery; Internal medicine","score_opus":0.03280108987848218,"score_gpt":0.36256398666391987,"score_spread":0.3297628967854377,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410352779","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9735807,0.0014212056,0.000008983592,0.01632607,0.0010852057,0.0057752817,0.000024099245,0.000045120014,0.0017332999],"genre_scores_gemma":[0.9938559,0.0023070283,0.0000036821552,0.00088166486,0.0025488925,0.0003162772,0.0000065363897,0.000014882567,0.00006514333],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9954363,0.0017288271,0.0007772264,0.00039423408,0.0009298934,0.000733522],"domain_scores_gemma":[0.99843466,0.00015266615,0.00029525554,0.00079012656,0.00025117243,0.00007611308],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0048077772,0.00019317013,0.00044340084,0.00018569798,0.0014026391,0.000011493803,0.000512444,0.00006875856,0.000020817693],"category_scores_gemma":[0.00034147763,0.00010046,0.00012899155,0.0031492508,0.000074019685,0.000046072815,0.00023873731,0.0019554796,0.0000055042133],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000074709096,0.0018831971,0.98996234,0.00024126096,0.000060453807,0.0000016698106,0.001761034,0.00024672633,0.000003822089,0.00032510757,0.005239847,0.00019984276],"study_design_scores_gemma":[0.0012016732,0.00025392443,0.9961444,0.00010149908,0.00009729148,0.0000110965475,0.0007894421,0.0002200113,9.810706e-7,0.00028284342,0.0008213787,0.000075458614],"about_ca_topic_score_codex":0.00029157562,"about_ca_topic_score_gemma":0.0014254665,"teacher_disagreement_score":0.020275157,"about_ca_system_score_codex":0.00027572137,"about_ca_system_score_gemma":0.0004479847,"threshold_uncertainty_score":0.9998974},"labels":[],"label_agreement":null},{"id":"W4410375247","doi":"10.7759/cureus.84081","title":"Atypical Mycoplasma pneumoniae Infection Presenting With Abdominal Pain in a Four-Year-Old Boy: A Case Report","year":2025,"lang":"en","type":"article","venue":"Cureus","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"South Okanagan General Hospital","funders":"","keywords":"Medicine; Mycoplasma pneumoniae; Abdominal pain; Surgery; Internal medicine; Pneumonia","score_opus":0.016662775180264603,"score_gpt":0.2913314099462805,"score_spread":0.2746686347660159,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410375247","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9925002,0.00003575558,0.0008871681,0.0013073215,0.00027618732,0.00045979524,0.0000018239207,0.00012720525,0.004404575],"genre_scores_gemma":[0.99701214,0.00001055235,0.00018666725,0.00032330357,0.0001523747,0.00010454361,0.000004583365,0.000019143794,0.0021866916],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99870986,0.00012669421,0.0003548922,0.00034191157,0.00016559564,0.00030105433],"domain_scores_gemma":[0.9992066,0.000112146125,0.00009467164,0.00036750088,0.000099773904,0.00011931086],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00056878885,0.00016757718,0.00028135395,0.0002135529,0.00015359122,0.00003230999,0.000038864855,0.00015973847,0.00003891909],"category_scores_gemma":[0.0006431423,0.00013548932,0.00009052308,0.0005389031,0.000058958132,0.00010229055,0.000045095916,0.00042109075,0.00001826782],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019496403,0.00027515192,0.92871785,0.00012666018,0.00009553568,0.06433915,0.00012959166,0.00004063591,0.0034822058,0.0001446464,0.0010710483,0.0013825515],"study_design_scores_gemma":[0.00497154,0.0013211154,0.6174715,0.00087108416,0.00045821283,0.3051619,0.00047687383,0.0034925123,0.0010041343,0.00025003485,0.0639833,0.00053777517],"about_ca_topic_score_codex":0.00043161068,"about_ca_topic_score_gemma":0.0020766822,"teacher_disagreement_score":0.31124634,"about_ca_system_score_codex":0.00017521608,"about_ca_system_score_gemma":0.00023144008,"threshold_uncertainty_score":0.5525094},"labels":[],"label_agreement":null},{"id":"W4410583724","doi":"10.1093/pch/pxaf036","title":"Antibiotic prescribing practices for acute otitis media and community-acquired pneumonia in a pediatric emergency department","year":2025,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Emergency department; Acute otitis media; Medicine; Otitis; Antibiotics; Pneumonia; Community-acquired pneumonia; Intensive care medicine; Internal medicine; Surgery; Nursing; Microbiology","score_opus":0.030727290711572375,"score_gpt":0.3467810871700517,"score_spread":0.3160537964584793,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410583724","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9655971,0.008375714,0.00024823088,0.020821197,0.0013693995,0.002027348,0.0001270059,0.00012920247,0.0013048209],"genre_scores_gemma":[0.96029705,0.036502086,0.00037788585,0.002052205,0.00047895208,0.00007988676,0.000100065074,0.000030069861,0.00008179494],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9977526,0.0003935989,0.00071464595,0.00035362176,0.00022031556,0.0005651898],"domain_scores_gemma":[0.9981107,0.0006163045,0.0004832262,0.00038522083,0.000114966606,0.00028956565],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011832692,0.00024266509,0.0005329733,0.0007141222,0.0008720402,0.00003112431,0.00013332447,0.00015706956,0.0000075264875],"category_scores_gemma":[0.0011076048,0.00022931138,0.000113311326,0.0011215311,0.00004204174,0.0001596244,0.000111659996,0.00065494474,0.0000056574245],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007625084,0.0009608463,0.9893566,0.0016290533,0.0001133072,0.000017466211,0.001465122,0.00000688257,0.00018130043,0.00041085776,0.002223575,0.0035587868],"study_design_scores_gemma":[0.002175353,0.00069821754,0.98711044,0.000108226515,0.00057760434,0.00004979524,0.00028209088,0.00013524719,0.000028271084,0.00030103372,0.008318328,0.00021538464],"about_ca_topic_score_codex":0.00039298082,"about_ca_topic_score_gemma":0.0012349404,"teacher_disagreement_score":0.028126372,"about_ca_system_score_codex":0.000197236,"about_ca_system_score_gemma":0.00057222805,"threshold_uncertainty_score":0.93510467},"labels":[],"label_agreement":null},{"id":"W4410942487","doi":"10.1016/j.vaccine.2025.127331","title":"Healthcare workers' current practices, knowledge/awareness, barriers, and attitudes/perceptions related to pneumococcal vaccination of older adults: A mixed-methods systematic review","year":2025,"lang":"en","type":"review","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Mental Health Research Canada; Centre for Addiction and Mental Health","funders":"Canada Research Chairs; University of Ottawa","keywords":"Vaccination; Pneumococcal vaccination; Perception; Health care; Medicine; Environmental health; Family medicine; Psychology; Streptococcus pneumoniae; Immunology; Microbiology; Political science","score_opus":0.028326736563485076,"score_gpt":0.45393444804821154,"score_spread":0.4256077114847265,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410942487","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00004897861,0.9877213,0.00024047245,0.001104434,0.0011453831,0.009428411,0.00009009826,0.00014418997,0.000076718134],"genre_scores_gemma":[0.00011814026,0.99638534,0.0003136726,0.0001718754,0.000112625385,0.002078812,0.00026090842,0.00007375416,0.00048486638],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.99384505,0.002050566,0.002508425,0.0008986126,0.00029019822,0.00040717787],"domain_scores_gemma":[0.9945218,0.0010600202,0.0018753038,0.0011190113,0.0008406173,0.0005832289],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0016814674,0.0007306757,0.0049956255,0.0009741113,0.00026394252,0.000030106326,0.00027085815,0.00053357723,0.00015635714],"category_scores_gemma":[0.004828674,0.00053716544,0.00068714086,0.0025643033,0.000015111622,0.00014111029,0.00022974929,0.0010744525,0.00006901579],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008866341,0.00021787995,0.00064077834,0.7739582,0.00036527734,0.0000050982626,0.00012419716,1.1248749e-7,0.0000019655738,0.000028325545,0.0013465612,0.22330274],"study_design_scores_gemma":[0.0005926446,0.0001966032,0.0020156105,0.79284686,0.008865189,0.00022708604,0.00011195084,0.0000047780322,3.1665968e-7,0.0000036025287,0.19478658,0.00034876267],"about_ca_topic_score_codex":0.00002535827,"about_ca_topic_score_gemma":0.00007127866,"teacher_disagreement_score":0.22295398,"about_ca_system_score_codex":0.00042958313,"about_ca_system_score_gemma":0.0019406955,"threshold_uncertainty_score":0.999708},"labels":[],"label_agreement":null},{"id":"W4410943746","doi":"10.1016/s1473-3099(25)00212-9","title":"Long-term effects of azithromycin mass administration to reduce childhood mortality on Streptococcus pneumoniae antimicrobial resistance: a population-based, cross-sectional, follow-up carriage survey","year":2025,"lang":"en","type":"article","venue":"The Lancet Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Wellcome Trust; National Institute for Health and Care Research; Bill and Melinda Gates Foundation","keywords":"Azithromycin; Carriage; Streptococcus pneumoniae; Medicine; Antimicrobial; Population; Antibiotic resistance; Cross-sectional study; Microbiology; Biology; Antibiotics; Environmental health; Pathology","score_opus":0.022766625221173183,"score_gpt":0.3427233677289982,"score_spread":0.319956742507825,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410943746","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99469084,0.00007058206,0.00015318836,0.0004374334,0.0013661295,0.0017949534,0.0006247249,0.00026494052,0.00059719384],"genre_scores_gemma":[0.99706787,0.00001893072,0.000002774871,0.0015152446,0.00041933067,0.00026925709,0.00036770417,0.000031682295,0.0003072076],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99778163,0.00039844483,0.00055021147,0.00052245747,0.00037136255,0.000375918],"domain_scores_gemma":[0.99774545,0.00058616983,0.00024983555,0.0008869253,0.00034980552,0.0001818124],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00034090405,0.0003250132,0.00062406104,0.00025238984,0.00053066766,0.000109226334,0.00019277584,0.0001547031,0.00003177451],"category_scores_gemma":[0.0012407075,0.00025785327,0.0002996332,0.00077770505,0.00015061237,0.00009417238,0.0000365342,0.00030579625,0.000018022381],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046458322,0.00079779036,0.98604083,0.0006860526,0.000296332,0.000021914684,0.000028213943,0.00051577657,0.010121625,0.000100680554,0.0008173287,0.00010887246],"study_design_scores_gemma":[0.0030370282,0.0004190845,0.98729587,0.0005504389,0.0003028452,0.000003883742,0.0000030098718,0.000006617923,0.007992703,0.000116705,0.00004986818,0.00022197432],"about_ca_topic_score_codex":0.00021839113,"about_ca_topic_score_gemma":0.0012324114,"teacher_disagreement_score":0.0025724452,"about_ca_system_score_codex":0.00025419026,"about_ca_system_score_gemma":0.0006709055,"threshold_uncertainty_score":0.99998736},"labels":[],"label_agreement":null},{"id":"W4410999818","doi":"10.1080/14760584.2025.2515596","title":"Cost-effectiveness analysis of 20-valent pneumococcal conjugate vaccine (PCV20) to prevent pneumococcal disease in the Greek pediatric population","year":2025,"lang":"en","type":"article","venue":"Expert Review of Vaccines","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer","keywords":"Pneumococcal disease; Pneumococcal conjugate vaccine; Medicine; Conjugate vaccine; Population; Pneumococcal infections; Streptococcus pneumoniae; Pediatrics; Immunology; Immunization; Microbiology; Biology; Immune system; Environmental health; Antibiotics","score_opus":0.025494778730121157,"score_gpt":0.38067700006049776,"score_spread":0.3551822213303766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410999818","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95148927,0.037738126,0.00020610724,0.006055726,0.00028957243,0.004017497,0.000038228714,0.000031405078,0.00013406436],"genre_scores_gemma":[0.97658247,0.020755671,0.000023857192,0.0015432903,0.00013882313,0.00080426765,0.00008839272,0.000015005404,0.00004823614],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9974602,0.00053384126,0.0010443699,0.0003902352,0.0003271646,0.00024423044],"domain_scores_gemma":[0.998243,0.00036355547,0.0002701001,0.0006914506,0.00027760287,0.00015430174],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008774204,0.0002710498,0.0012010456,0.0008393791,0.000069675116,0.0000085040765,0.00022808334,0.00006935752,0.000085129315],"category_scores_gemma":[0.0005945835,0.00017205955,0.000578505,0.0033714387,0.000014073275,0.00008038316,0.000079410085,0.00017427815,0.000006066306],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024658194,0.0016707008,0.9706054,0.009340253,0.00055607426,0.00003291778,0.00018447611,0.0004640476,0.010909354,0.00015987299,0.0006599793,0.00517034],"study_design_scores_gemma":[0.0006853931,0.00020089542,0.9872027,0.003399761,0.0024742568,0.0000055069777,0.000027920982,0.00016483421,0.0002949606,0.000024841542,0.0053697824,0.00014912953],"about_ca_topic_score_codex":0.00014486615,"about_ca_topic_score_gemma":0.00008689432,"teacher_disagreement_score":0.025093183,"about_ca_system_score_codex":0.00010440651,"about_ca_system_score_gemma":0.00013071878,"threshold_uncertainty_score":0.70163846},"labels":[],"label_agreement":null},{"id":"W4411112285","doi":"10.1002/pds.70163","title":"Clarithromycin Versus Azithromycin for Community‐Acquired Pneumonia and the Risk of Major Adverse Cardiovascular Events: A Multicentre Cohort Study Using Data From Canada and Denmark","year":2025,"lang":"en","type":"article","venue":"Pharmacoepidemiology and Drug Safety","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Sinai Health System; University of Toronto; St. Michael's Hospital; Queen's University","funders":"","keywords":"Medicine; Clarithromycin; Azithromycin; Internal medicine; Propensity score matching; Population; Cohort study; Antibacterial agent; Surgery; Antibiotics","score_opus":0.042184308864202574,"score_gpt":0.3453913952436615,"score_spread":0.3032070863794589,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411112285","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9900996,0.00452678,0.00072513253,0.0015176408,0.00050152757,0.001920587,0.0006530652,0.00001580431,0.0000398357],"genre_scores_gemma":[0.996588,0.002077593,0.00022671054,0.0008672184,0.00006501652,0.000049326187,0.000090606554,0.000013001786,0.000022549859],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99499094,0.0036199878,0.00057846506,0.00042821123,0.00011971109,0.00026265718],"domain_scores_gemma":[0.99173886,0.0070335204,0.00020669193,0.0007915733,0.00009835387,0.00013097787],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00468121,0.00023618896,0.0010361712,0.00006569857,0.00081209926,0.0000039776623,0.00018988416,0.00010588392,0.000012182639],"category_scores_gemma":[0.0017115911,0.00016491386,0.000115731025,0.00013909322,0.00046366645,0.00008954378,0.00039529282,0.00047042142,2.749548e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026985807,0.00017512747,0.98830813,0.000119476084,0.006286452,0.0000072730995,0.00042515132,0.00018069996,0.0006123897,0.000022809854,0.00031054395,0.00085336645],"study_design_scores_gemma":[0.022951359,0.00006511995,0.9529937,0.00008899502,0.009223371,0.000015666275,0.0030203066,0.00863619,0.00004660474,0.00010860924,0.0026990809,0.00015099002],"about_ca_topic_score_codex":0.49548605,"about_ca_topic_score_gemma":0.23091595,"teacher_disagreement_score":0.2645701,"about_ca_system_score_codex":0.00008149174,"about_ca_system_score_gemma":0.0002792678,"threshold_uncertainty_score":0.78311783},"labels":[],"label_agreement":null},{"id":"W4411124254","doi":"10.1080/17476348.2025.2513518","title":"An overview of the recent trials of corticosteroids for severe community-acquired pneumonia","year":2025,"lang":"en","type":"review","venue":"Expert Review of Respiratory Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Intensive care medicine; Inhaled corticosteroids; Adrenal cortex hormones; Clinical trial; Internal medicine; Asthma","score_opus":0.3036848556471926,"score_gpt":0.5170397866768799,"score_spread":0.21335493102968728,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411124254","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000017811717,0.98927134,0.000025363934,0.0009323081,0.0013068215,0.0075410097,0.00032771457,0.000035749166,0.00054187595],"genre_scores_gemma":[0.0000070269607,0.9918145,0.000058249272,0.006527637,0.0004650989,0.00077214855,0.00015004954,0.00007785869,0.000127452],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9859226,0.006017115,0.006367789,0.0004715791,0.00086104585,0.00035986886],"domain_scores_gemma":[0.9870881,0.0030429808,0.005123166,0.0032571428,0.0012302226,0.0002584244],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.008227726,0.0007942207,0.0118879685,0.00048811556,0.00019053885,0.000004049659,0.0010471434,0.0005040687,0.00034128086],"category_scores_gemma":[0.012051796,0.00041638553,0.002538286,0.0016016904,0.0007782806,0.00007692881,0.00019907914,0.0006866565,0.0000019876052],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003344776,0.0003747535,0.000013813429,0.43811616,0.00049774715,0.0000018663488,0.00010300692,6.018475e-8,0.0017617841,0.00007634307,0.007454227,0.5515668],"study_design_scores_gemma":[0.000888888,0.001352574,0.000030482783,0.4029267,0.0036468748,0.00003229106,0.000046683163,1.8160999e-7,0.0001037167,0.000007828327,0.59079474,0.00016899806],"about_ca_topic_score_codex":0.0000324796,"about_ca_topic_score_gemma":0.00000916944,"teacher_disagreement_score":0.5833405,"about_ca_system_score_codex":0.0001835077,"about_ca_system_score_gemma":0.0022234845,"threshold_uncertainty_score":0.9998288},"labels":[],"label_agreement":null},{"id":"W4411174862","doi":"10.3390/vaccines13060627","title":"Predicting the Epidemiological Effects in the United Kingdom of Moving from PCV13 to PCV15 in the Routine Pediatric 1 + 1 Vaccination Schedule","year":2025,"lang":"en","type":"review","venue":"Vaccines","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Merck Canada Inc. (Canada)","funders":"","keywords":"Epidemiology; Vaccination; Schedule; Medicine; Pediatrics; Vaccination schedule; Virology; Computer science; Immunology; Immunization; Pathology","score_opus":0.07323643682179723,"score_gpt":0.37951704891861876,"score_spread":0.30628061209682156,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411174862","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.25460124,0.7361052,0.00008980349,0.0037555485,0.00058451435,0.0043800115,0.000034341465,0.00007164277,0.00037770515],"genre_scores_gemma":[0.1602058,0.83377594,0.00007063021,0.002785678,0.0017785281,0.0011296625,0.00016676298,0.00004399002,0.00004298285],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9957699,0.0021968028,0.0010368179,0.00039689438,0.00027334594,0.0003262343],"domain_scores_gemma":[0.98719925,0.011550238,0.00042712066,0.00068016956,0.00009836819,0.000044862765],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0026477799,0.00038130354,0.001336722,0.0008303203,0.00016940932,0.000030184498,0.0006146846,0.00035142282,0.000020130932],"category_scores_gemma":[0.008926456,0.00015025884,0.0003578363,0.003816253,0.000013393003,0.000046335943,0.00014555968,0.0011275276,0.00001297197],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000103171755,0.0012347285,0.7506117,0.035567954,0.00042478513,0.0001576848,0.002626243,0.00068879017,0.00006755243,0.002361217,0.0026365004,0.20351967],"study_design_scores_gemma":[0.0017380456,0.0005225536,0.73254496,0.018283367,0.003401819,0.00008581551,0.0005445741,0.00045395902,0.000006100491,0.0003051536,0.2416381,0.00047558866],"about_ca_topic_score_codex":0.0005456509,"about_ca_topic_score_gemma":0.00016026307,"teacher_disagreement_score":0.23900159,"about_ca_system_score_codex":0.000091264956,"about_ca_system_score_gemma":0.00020606763,"threshold_uncertainty_score":0.9994218},"labels":[],"label_agreement":null},{"id":"W4411339190","doi":"10.3390/v17060851","title":"The Effect on Mortality of Bacterial Co-Infections on Critically Ill Patients with Community-Acquired COVID-19 and Influenza Pneumonia: A Systematic Review","year":2025,"lang":"en","type":"review","venue":"Viruses","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Critically ill; Pneumonia; Coronavirus disease 2019 (COVID-19); Medicine; Community-acquired pneumonia; Intensive care medicine; 2019-20 coronavirus outbreak; Immunology; Virology; Internal medicine; Infectious disease (medical specialty); Disease; Outbreak","score_opus":0.061963216595677106,"score_gpt":0.4082376405304912,"score_spread":0.3462744239348141,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411339190","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0061072176,0.98228866,0.000004183451,0.000108170905,0.000387984,0.00948923,0.0007660974,0.00014553827,0.00070294744],"genre_scores_gemma":[0.00034728806,0.98609596,9.845683e-7,0.012025136,0.00005167843,0.0012968583,0.000109599256,0.000046818895,0.000025694577],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.99489665,0.0030623048,0.0010837083,0.00030004518,0.00040169674,0.00025560494],"domain_scores_gemma":[0.99158174,0.006016373,0.00052804075,0.0012299039,0.00039394494,0.00025002574],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010151839,0.0005294866,0.0030259432,0.00023852268,0.0007597542,0.000052271018,0.00021491424,0.00024350345,0.000018962515],"category_scores_gemma":[0.011120014,0.00026433542,0.0004067687,0.00045933478,0.00041179807,0.00005384308,0.00007577082,0.0006356907,0.000027113028],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055535005,0.0004351217,0.0012483401,0.9947797,0.00090522884,0.000007903564,0.000019860616,1.7693154e-7,0.0000063766674,0.00008313653,0.00021942222,0.0022391968],"study_design_scores_gemma":[0.0008672633,0.004165959,0.00052279944,0.6462894,0.010013578,0.000031677806,0.000008563989,7.944982e-8,0.0000042611537,0.0000036553008,0.33783513,0.00025759192],"about_ca_topic_score_codex":0.00006864213,"about_ca_topic_score_gemma":0.00004597171,"teacher_disagreement_score":0.34849027,"about_ca_system_score_codex":0.00021233021,"about_ca_system_score_gemma":0.0005698298,"threshold_uncertainty_score":0.99998087},"labels":[],"label_agreement":null},{"id":"W4411490252","doi":"10.1080/14737167.2025.2521445","title":"Cost-effectiveness analysis of 20-valent anti-pneumococcal vaccination in the Spanish pediatric population","year":2025,"lang":"en","type":"article","venue":"Expert Review of Pharmacoeconomics & Outcomes Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer","keywords":"Medicine; Pneumococcal disease; Pneumococcal conjugate vaccine; Cost effectiveness; Cost-effectiveness analysis; Population; Vaccination; Dominance (genetics); Environmental health; Immunology; Streptococcus pneumoniae; Risk analysis (engineering); Antibiotics","score_opus":0.06658409783944592,"score_gpt":0.5548339014185718,"score_spread":0.4882498035791259,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411490252","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9745217,0.016222434,0.00007123359,0.0045037083,0.00028243812,0.0029439554,0.000029120289,0.000013739472,0.001411687],"genre_scores_gemma":[0.93331146,0.06505309,0.000015787831,0.0011023626,0.000060127462,0.0003329511,0.00005919485,0.000010238965,0.000054783384],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99728084,0.0009711169,0.0008584712,0.00029409298,0.0003327387,0.00026275334],"domain_scores_gemma":[0.99796516,0.0010191752,0.00019925756,0.0004325067,0.00032256093,0.0000613474],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0037466725,0.00015141761,0.0009413491,0.0014571523,0.00009223086,0.000014828862,0.00027146676,0.000073967705,0.00020372908],"category_scores_gemma":[0.00039946398,0.000106901374,0.00045837575,0.0023909418,0.000043273987,0.0001143158,0.00008624382,0.00039093412,0.000008406117],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000032840362,0.0005015732,0.98001224,0.0039947066,0.0005312635,0.0000043410805,0.00015140501,0.000226824,0.004999071,0.00029879212,0.0006816715,0.008565253],"study_design_scores_gemma":[0.0008759238,0.000056050107,0.99028426,0.0004240299,0.0006045318,0.0000019076963,0.00007092699,0.0009114888,0.0009009262,0.000021169331,0.0057660844,0.000082715385],"about_ca_topic_score_codex":0.00020208734,"about_ca_topic_score_gemma":0.00003310464,"teacher_disagreement_score":0.04883066,"about_ca_system_score_codex":0.00032684964,"about_ca_system_score_gemma":0.00019314574,"threshold_uncertainty_score":0.43593115},"labels":[],"label_agreement":null},{"id":"W4411549775","doi":"10.1080/07853890.2025.2517376","title":"Does pneumonia increase the risk of dementia and cognitive decline? A systematic review and meta-analysis","year":2025,"lang":"en","type":"review","venue":"Annals of Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Dementia; Meta-analysis; Cognitive decline; Pneumonia; Medicine; Cognition; Systematic review; Intensive care medicine; Risk factor; MEDLINE; Gerontology; Disease; Psychiatry; Internal medicine; Political science","score_opus":0.0927047566034244,"score_gpt":0.41607978967111825,"score_spread":0.32337503306769383,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411549775","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000017214094,0.9908507,0.00001953118,0.0056284494,0.000030791445,0.0028915443,0.00033182502,0.000011803263,0.00021813055],"genre_scores_gemma":[0.0006840207,0.9945592,0.000004870296,0.0038596005,0.000037524744,0.00032619893,0.000050822087,0.000016242857,0.00046147776],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99601454,0.0011952142,0.0018228338,0.0003709409,0.0004199419,0.00017653951],"domain_scores_gemma":[0.99375415,0.0030566768,0.0018024041,0.0006392482,0.0005782026,0.00016929694],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0028536767,0.00043990999,0.010560681,0.0005569215,0.00009281458,0.0000056865338,0.00015472413,0.00016238943,0.00014337535],"category_scores_gemma":[0.0057222997,0.00014772,0.0016641056,0.0011948415,0.00057847606,0.00003101336,0.00013798037,0.00036433025,0.0000016858999],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000004032441,0.000051795865,0.000110231245,0.7263736,0.27047852,0.0000091677,0.00003330282,1.681307e-8,6.1183243e-7,0.000021712951,0.00016320053,0.0027537867],"study_design_scores_gemma":[0.0002005381,0.0001804261,0.00015059736,0.16623142,0.81574565,0.000039037626,0.000050195085,7.2950985e-7,8.6372626e-7,0.00003287139,0.017265677,0.00010197848],"about_ca_topic_score_codex":0.00016771274,"about_ca_topic_score_gemma":0.00005378212,"teacher_disagreement_score":0.5601422,"about_ca_system_score_codex":0.0000042788724,"about_ca_system_score_gemma":0.00016809745,"threshold_uncertainty_score":0.7219071},"labels":[],"label_agreement":null},{"id":"W4411831267","doi":"10.4081/monaldi.2025.3564","title":"Biomarkers in atypical pneumonia: a systematic review of diagnostic and prognostic utility","year":2025,"lang":"en","type":"review","venue":"Monaldi Archives for Chest Disease","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Procalcitonin; Medicine; Mycoplasma pneumoniae; Internal medicine; Mycoplasma pneumonia; Biomarker; Pneumonia; Chlamydia; Confidence interval; Atypical pneumonia; Mycoplasma; Odds ratio; Gastroenterology; Chlamydophila pneumoniae; Ferritin; Immunology; Sepsis; Microbiology; Biology","score_opus":0.024947921335428277,"score_gpt":0.3336239316496611,"score_spread":0.3086760103142328,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411831267","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000050011604,0.9885219,0.000051226165,0.00030660682,0.00006847693,0.010192289,0.00065863045,0.000035281115,0.00011562962],"genre_scores_gemma":[0.0005163797,0.99444723,0.000043650245,0.00019710323,0.000030465968,0.0043492387,0.00030758593,0.000034890534,0.000073452604],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.99727976,0.0003891107,0.0012679868,0.00054904807,0.00020173193,0.0003123857],"domain_scores_gemma":[0.99166566,0.006923972,0.0003573273,0.00058067543,0.000042956086,0.00042940004],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00028813648,0.00045350727,0.0030942778,0.0004085667,0.00006531442,0.000010870815,0.00016648787,0.00011451764,0.000006720872],"category_scores_gemma":[0.012468111,0.00032633657,0.0010174796,0.00042292444,0.00032416367,0.00003224001,0.000110844216,0.0002864265,0.000003294616],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046718164,0.00042499776,0.0018270845,0.9711519,0.00045166642,0.0000872133,0.000012498781,3.3208103e-8,9.976984e-7,0.000053617223,0.000029960758,0.02591331],"study_design_scores_gemma":[0.00037683028,0.00010774484,0.009617409,0.94846636,0.013832505,0.000038123624,0.000004525093,0.000030576914,1.4896978e-7,0.00020410646,0.02708148,0.00024016465],"about_ca_topic_score_codex":0.0000016338383,"about_ca_topic_score_gemma":0.0000015986736,"teacher_disagreement_score":0.02705152,"about_ca_system_score_codex":0.000043741027,"about_ca_system_score_gemma":0.0010045277,"threshold_uncertainty_score":0.9999189},"labels":[],"label_agreement":null},{"id":"W4411967397","doi":"10.1016/j.cmi.2025.06.033","title":"Empiric antibiotic therapy for moderate-to-severe community-acquired pneumonia: a systematic review and network meta-analysis","year":2025,"lang":"en","type":"review","venue":"Clinical Microbiology and Infection","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Calgary; Western University; Impact; McMaster University","funders":"Einstein Stiftung Berlin","keywords":"Meta-analysis; Pneumonia; Intensive care medicine; Antibiotic therapy; Medicine; Antibiotics; Community-acquired pneumonia; Systematic review; MEDLINE; Internal medicine; Microbiology; Biology","score_opus":0.18880427598668542,"score_gpt":0.449423696822149,"score_spread":0.2606194208354636,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411967397","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0001406976,0.99226373,0.00033819632,0.00043026474,0.00031815938,0.0062561743,0.00012397736,0.00007732995,0.00005148803],"genre_scores_gemma":[0.00029065658,0.9904367,0.00003746887,0.0076544215,0.00010395959,0.0006263735,0.00033933786,0.000029347248,0.00048175937],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9937077,0.0034252245,0.0018935683,0.0006193334,0.000030354382,0.00032378265],"domain_scores_gemma":[0.995149,0.0030678995,0.00068024243,0.00071932306,0.0002081674,0.00017534402],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0026616594,0.00055670965,0.010515928,0.00037854686,0.00056714244,0.000036298672,0.000112684655,0.0010081633,0.000027239295],"category_scores_gemma":[0.0010124631,0.0003449383,0.0032119893,0.0010828662,0.00023208455,0.000044963275,0.00011797078,0.0008246189,0.000017631297],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003916,0.00038026122,0.00030514266,0.82936597,0.16157909,0.0000022014417,0.000012081983,0.000004070987,0.000011105619,0.000021984968,0.001172119,0.007106833],"study_design_scores_gemma":[0.0004937264,0.0011824835,0.00012188895,0.04843985,0.77073026,0.00034971646,0.000001998779,0.000004195275,3.257926e-7,0.00002730453,0.17827156,0.00037666172],"about_ca_topic_score_codex":0.000011831015,"about_ca_topic_score_gemma":0.0000384287,"teacher_disagreement_score":0.7809261,"about_ca_system_score_codex":0.00004419025,"about_ca_system_score_gemma":0.0001898955,"threshold_uncertainty_score":0.9999003},"labels":[],"label_agreement":null},{"id":"W4412152495","doi":"10.1007/s11606-025-09724-y","title":"Systemic Corticosteroids Continue to Reduce Mortality in Severe Community-Acquired Pneumonia: An Updated Meta-Analysis","year":2025,"lang":"en","type":"article","venue":"Journal of General Internal Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"","keywords":"Medicine; Pneumonia; Meta-analysis; Community-acquired pneumonia; Intensive care medicine; MEDLINE; Internal medicine","score_opus":0.07877601108616683,"score_gpt":0.3880806047259449,"score_spread":0.3093045936397781,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412152495","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9884377,0.0007275879,0.0010554596,0.0069402424,0.0008206358,0.00031005096,0.0000141750725,0.00002306785,0.0016710862],"genre_scores_gemma":[0.9897153,0.000036077083,0.00009588102,0.0059584775,0.00033978673,0.000013712171,0.00001780007,0.00001746448,0.0038055086],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9963313,0.0008502045,0.0017737612,0.00022210613,0.00052586006,0.0002967927],"domain_scores_gemma":[0.9975385,0.000106738706,0.0005912067,0.00061967364,0.00071036856,0.00043349763],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017531102,0.0002897953,0.0022105454,0.0015229366,0.000109183966,0.0000322188,0.00040651744,0.00014390559,0.00031402448],"category_scores_gemma":[0.0003087614,0.00018983215,0.00071774103,0.0014841486,0.00013817695,0.0001855913,0.000088606816,0.00087704614,0.0000057255447],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00059374026,0.0006456168,0.16577291,0.00008995939,0.06494801,0.0007903898,0.0011014485,0.001062682,0.76083,0.000053776814,0.0034714527,0.00064004015],"study_design_scores_gemma":[0.0057470836,0.0046794885,0.7812477,0.0007402231,0.18713954,0.004070319,0.0019225507,0.00086584035,0.007633019,0.00015199262,0.005413313,0.00038894676],"about_ca_topic_score_codex":0.0017731739,"about_ca_topic_score_gemma":0.0009871409,"teacher_disagreement_score":0.75319695,"about_ca_system_score_codex":0.0002892925,"about_ca_system_score_gemma":0.00017832268,"threshold_uncertainty_score":0.774113},"labels":[],"label_agreement":null},{"id":"W4412483251","doi":"10.1093/ofid/ofaf422","title":"High Propensity for Multidrug-Resistant Pneumococcal Shedding Among Adults Living With HIV on Stable Antiretroviral Therapy in Malawi","year":2025,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute for Health Research Applied Research Collaboration East of England; Wellcome Trust","keywords":"Carriage; Medicine; Asymptomatic; Odds ratio; Internal medicine; Immunology; Pathology","score_opus":0.010657374490829874,"score_gpt":0.27008146358965196,"score_spread":0.2594240890988221,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412483251","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9901889,0.000041717638,0.000121463025,0.00051176496,0.00023561338,0.003586304,0.00008861827,0.00016306943,0.0050625578],"genre_scores_gemma":[0.99688965,0.000032224292,0.000027593233,0.0008712694,0.000055434644,0.00084852707,0.00004854079,0.000048854665,0.0011778764],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99816984,0.00009906849,0.00036217755,0.00059245044,0.00020083327,0.00057560706],"domain_scores_gemma":[0.99884355,0.00023994365,0.00013430639,0.00042922943,0.00016104185,0.00019193783],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00017862924,0.0003316416,0.0005908285,0.00033935424,0.0005683499,0.00021987883,0.00019714715,0.00011252505,0.000061331164],"category_scores_gemma":[0.00022704454,0.00024635112,0.00015412357,0.0005283358,0.00013984424,0.00042943616,0.00015073738,0.00025968565,0.00001256182],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013704129,0.0015942678,0.98925656,0.00014627306,0.00014455419,0.000041003223,0.00005716494,0.000310359,0.0034789965,0.0010781583,0.00041239965,0.002109829],"study_design_scores_gemma":[0.0059726373,0.0032072465,0.9853399,0.0019093511,0.00010848006,0.0000070054684,0.00026348696,0.0005017389,0.0010628133,0.000114568786,0.0011839609,0.0003288024],"about_ca_topic_score_codex":0.0011015682,"about_ca_topic_score_gemma":0.0017275325,"teacher_disagreement_score":0.006700788,"about_ca_system_score_codex":0.00028338944,"about_ca_system_score_gemma":0.0003423855,"threshold_uncertainty_score":0.99999887},"labels":[],"label_agreement":null},{"id":"W4412511548","doi":"10.1080/13696998.2025.2536430","title":"Evaluating the impact of population-based and cohort-based models in cost-effectiveness analysis: a case study of pneumococcal conjugate vaccines in infants in Germany","year":2025,"lang":"en","type":"article","venue":"Journal of Medical Economics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer","keywords":"Medicine; Pneumococcal conjugate vaccine; Cohort; Population; Conjugate; Intensive care medicine; Pediatrics; Pneumococcal disease; Streptococcus pneumoniae; Internal medicine; Environmental health; Antibiotics","score_opus":0.0533297024258658,"score_gpt":0.4279798779205503,"score_spread":0.3746501754946845,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412511548","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987708,0.000068026,0.00009903785,0.00030018334,0.000057688056,0.000688327,0.0000046264618,0.0000017233453,0.000009587437],"genre_scores_gemma":[0.99983567,0.000025113633,0.000008638233,0.00008204005,0.000017468414,0.000023611621,0.000001410603,0.0000056482822,3.862512e-7],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99785405,0.00046720967,0.0012260845,0.00013316047,0.00018992304,0.00012958606],"domain_scores_gemma":[0.99797505,0.0011583915,0.00048672347,0.00016007131,0.0001176105,0.00010214575],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0038428383,0.000115150186,0.0008421301,0.0010503357,0.000025894042,0.000008655087,0.000091173424,0.00011841052,0.000014082691],"category_scores_gemma":[0.00070721225,0.00007599321,0.00016111099,0.00061551674,0.00004785228,0.00008340328,0.000024137411,0.00043238213,4.700285e-8],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003083685,0.0005641446,0.6296956,0.000042092586,0.000247581,0.00015658438,0.00014924821,0.3677672,0.00017654334,0.000004736332,1.7430176e-7,0.00088768534],"study_design_scores_gemma":[0.00483089,0.0004804114,0.5680319,0.00022036627,0.00021935119,0.00005982851,0.00025886093,0.4258062,0.000012777938,0.000047428653,1.53691e-7,0.00003184921],"about_ca_topic_score_codex":0.0039436105,"about_ca_topic_score_gemma":0.0050834543,"teacher_disagreement_score":0.061663732,"about_ca_system_score_codex":0.00026706723,"about_ca_system_score_gemma":0.0009095005,"threshold_uncertainty_score":0.5961585},"labels":[],"label_agreement":null},{"id":"W4412526601","doi":"10.1128/aac.00513-25","title":"Static vs. cidal: it’s not complex; it’s simply incorrect","year":2025,"lang":"en","type":"letter","venue":"Antimicrobial Agents and Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre; Université de Sherbrooke; University of Alberta","funders":"","keywords":"Computer science","score_opus":0.03408789417498646,"score_gpt":0.3060517706035474,"score_spread":0.2719638764285609,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412526601","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.002248338,4.6071426e-7,0.000071106035,0.9925656,0.0009322629,0.0006862752,0.00022250562,0.00011964195,0.003153809],"genre_scores_gemma":[0.0074284514,0.0013568773,0.000082305785,0.97440845,0.0015358373,0.000021148011,0.0005292692,0.00009096289,0.014546713],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978966,0.00008155986,0.0005279532,0.0006263122,0.0002746904,0.00059286936],"domain_scores_gemma":[0.9989825,0.000092093665,0.00020493518,0.00047065597,0.000121580524,0.00012822909],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00011272156,0.00055121107,0.00090245705,0.0002930545,0.00027601508,0.00011453268,0.00019592671,0.00069355033,0.0009091675],"category_scores_gemma":[0.000020438574,0.00046659342,0.00030976365,0.00023667901,0.00020110214,0.0000606924,0.00006910597,0.0011887054,0.00008264877],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008961617,0.00014704386,0.00076283445,0.0005722368,0.00042820914,0.00025905814,0.0002235791,8.9842933e-7,0.0015686436,0.0000016083153,0.9937967,0.002149571],"study_design_scores_gemma":[0.0021681816,0.0002334953,0.004801065,0.0005065079,0.00025578344,0.00016461944,0.000019509134,0.00003539485,0.00087237224,0.00001080335,0.9904843,0.00044795068],"about_ca_topic_score_codex":0.00016362949,"about_ca_topic_score_gemma":0.000027767272,"teacher_disagreement_score":0.018157165,"about_ca_system_score_codex":0.000102835234,"about_ca_system_score_gemma":0.00027823678,"threshold_uncertainty_score":0.99977857},"labels":[{"model":"gemma","categories":[],"domain":null,"study_design":"not_applicable","genre":"commentary","about_ca_system":false,"about_ca_topic":false,"confidence":"low"},{"model":"gpt","categories":[],"domain":null,"study_design":"not_applicable","genre":"commentary","about_ca_system":false,"about_ca_topic":false,"confidence":"low"}],"label_agreement":"agree"},{"id":"W4412727817","doi":"10.1097/pec.0000000000003457","title":"Emergency Department Markers of Severe Pediatric Pneumonia","year":2025,"lang":"en","type":"article","venue":"Pediatric Emergency Care","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Pneumonia; Emergency department; Pneumonia severity index; Receiver operating characteristic; Internal medicine; Sepsis; Retrospective cohort study; Bacterial pneumonia; Triage; Pediatrics; Intensive care; Emergency medicine; Intensive care medicine; Community-acquired pneumonia","score_opus":0.008793591057195767,"score_gpt":0.27940708639197076,"score_spread":0.27061349533477497,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412727817","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9477704,0.014238645,0.00005835672,0.00040244087,0.0041893716,0.0007331345,0.00010770235,0.00015448358,0.032345433],"genre_scores_gemma":[0.97378993,0.022061244,0.00005842221,0.000077814344,0.00085225026,0.00011211892,0.000060966257,0.000033772147,0.0029534814],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99769557,0.000076747005,0.0009002098,0.00046396148,0.00041649153,0.00044699525],"domain_scores_gemma":[0.99845177,0.00003338559,0.00023276487,0.00056284113,0.00050337677,0.00021583414],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00013455562,0.00031382497,0.00045356492,0.00064749864,0.00019996629,0.0000036925178,0.00019224464,0.00020712473,0.0014972583],"category_scores_gemma":[0.00016394182,0.00028903293,0.00045470285,0.0016104892,0.000022989296,0.000081507285,0.00010195933,0.00028801282,0.0000921553],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043915545,0.00020876234,0.9625946,0.0014228851,0.000097857184,0.000017998733,0.00020827763,0.000029576924,0.0006508894,0.00007850649,0.033884913,0.0007617801],"study_design_scores_gemma":[0.0008495999,0.00039856572,0.9736873,0.000014613864,0.0017633787,0.000014504873,0.00047437733,0.000009934639,0.00012141122,0.00012908253,0.022186311,0.00035090055],"about_ca_topic_score_codex":0.00003551759,"about_ca_topic_score_gemma":0.000035148558,"teacher_disagreement_score":0.02939195,"about_ca_system_score_codex":0.00013593724,"about_ca_system_score_gemma":0.0004497759,"threshold_uncertainty_score":0.9999562},"labels":[],"label_agreement":null},{"id":"W4412785297","doi":"10.46747/cfp.710708e185","title":"La <i>Mycoplasma pneumoniae</i> résistante chez l’enfant","year":2025,"lang":"fr","type":"article","venue":"Canadian Family Physician","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Mycoplasma pneumoniae; Computer science; World Wide Web; Medicine; Microbiology; Biology; Pneumonia; Internal medicine","score_opus":0.009622246757192551,"score_gpt":0.2502917486861829,"score_spread":0.24066950192899036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412785297","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.06646466,0.014753813,0.00008002429,0.014678039,0.008483388,0.0006156621,0.00064813683,0.00013525724,0.894141],"genre_scores_gemma":[0.7120498,0.000934306,0.000017612581,0.25094134,0.0014467387,0.00007972511,0.00005844327,0.000100275654,0.03437178],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99679345,0.00028160444,0.00051671994,0.0006708955,0.00025906146,0.0014782919],"domain_scores_gemma":[0.99736166,0.0001885512,0.000109444685,0.00083211384,0.00017850731,0.001329712],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00031283573,0.0005413348,0.0006876175,0.0006551053,0.00059894647,0.00013646325,0.00032482672,0.00055240997,0.00003299315],"category_scores_gemma":[0.000049269012,0.00060138,0.00039592592,0.0014842153,0.00065955,0.00018504748,0.000053951502,0.0010453966,0.0017244337],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048484148,0.000776111,0.010380761,0.0014042205,0.0016661283,0.0036474657,0.00072681,0.00016450803,0.22813007,0.10700897,0.3181109,0.32793555],"study_design_scores_gemma":[0.00093265506,0.00013907465,0.008679754,0.0017256303,0.000530698,0.00004437992,0.0008205261,0.00027695106,0.0006264171,0.00065905007,0.9850565,0.00050835294],"about_ca_topic_score_codex":0.019044979,"about_ca_topic_score_gemma":0.03245778,"teacher_disagreement_score":0.8597692,"about_ca_system_score_codex":0.0016761267,"about_ca_system_score_gemma":0.0057965713,"threshold_uncertainty_score":0.99983966},"labels":[],"label_agreement":null},{"id":"W4412785777","doi":"10.46747/cfp.710708487","title":"Resistant <i>Mycoplasma pneumoniae</i> in children","year":2025,"lang":"en","type":"article","venue":"Canadian Family Physician","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Azithromycin; Mycoplasma pneumoniae; Medicine; Pneumonia; Amoxicillin; Doxycycline; Pediatrics; Community-acquired pneumonia; Mycoplasma pneumonia; Internal medicine; Antibiotics; Microbiology; Biology","score_opus":0.007370578834864794,"score_gpt":0.23135351270120402,"score_spread":0.22398293386633922,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412785777","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7390574,0.00024144091,0.0000049092946,0.002352179,0.00021709147,0.0003542174,0.000049894137,0.000051706567,0.25767115],"genre_scores_gemma":[0.882751,0.000019461215,0.000008837317,0.11613382,0.00009409676,0.00003333954,0.00002523627,0.000018208622,0.0009160316],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989241,0.000032195843,0.00021134995,0.00028413802,0.00010382378,0.00044444064],"domain_scores_gemma":[0.99921525,0.00001871978,0.000028270248,0.00037041385,0.00004761631,0.00031974463],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000068223955,0.00016122517,0.0002610127,0.0005434925,0.00015240972,0.000024603361,0.000105810366,0.000108177555,0.0000024807043],"category_scores_gemma":[0.00001312573,0.00016235218,0.00009692405,0.00083640823,0.00007298824,0.000058357844,0.000014764506,0.00028207895,0.00013149869],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000060489183,0.0003778487,0.6058015,0.000108958804,0.0003589523,0.00037979573,0.0001255648,0.00008449251,0.28139037,0.0076121236,0.056417655,0.047282238],"study_design_scores_gemma":[0.001127329,0.000103354825,0.7027233,0.00026501983,0.000075499396,0.00001176806,0.00012408086,0.000041078663,0.0005837098,0.0004936184,0.29419637,0.00025486515],"about_ca_topic_score_codex":0.010495244,"about_ca_topic_score_gemma":0.030359114,"teacher_disagreement_score":0.28080666,"about_ca_system_score_codex":0.00046155596,"about_ca_system_score_gemma":0.0012274159,"threshold_uncertainty_score":0.9960939},"labels":[],"label_agreement":null},{"id":"W4413104600","doi":"10.1093/cid/ciaf438","title":"Long-term Immunogenicity and Boostability of the 13-valent Pneumococcal Conjugate Vaccine Followed by the 23-valent Pneumococcal Polysaccharide Vaccine in Adults Receiving Immunosuppressive Therapy and Adults With HIV—3-year Follow-up of a Prospective Cohort Study","year":2025,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"ZonMw","keywords":"Medicine; Immunogenicity; Pneumococcal polysaccharide vaccine; Pneumococcal conjugate vaccine; Pneumococcal vaccine; Immunology; Human immunodeficiency virus (HIV); Streptococcus pneumoniae; Virology; Immune system; Pneumococcal disease; Microbiology; Antibiotics","score_opus":0.00972598039795133,"score_gpt":0.2939091995257728,"score_spread":0.2841832191278215,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413104600","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99066305,0.0018795991,0.0000063520056,0.00046404073,0.00039102987,0.0063041593,0.00014737666,0.000071990275,0.00007242051],"genre_scores_gemma":[0.9976424,0.0014829832,7.2420573e-7,0.000173874,0.000055213844,0.00053423387,0.000015012325,0.00003522645,0.000060342514],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9959977,0.0008656389,0.0014771724,0.0008706009,0.0003872312,0.0004016237],"domain_scores_gemma":[0.996416,0.0012734213,0.0006170799,0.0010253085,0.0004583396,0.0002099011],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00078469526,0.0004651343,0.0013063495,0.00014649564,0.00032685391,0.000036826415,0.0002662193,0.00020012658,0.000027116508],"category_scores_gemma":[0.0012370452,0.00026339476,0.0004168142,0.0006317741,0.00055889913,0.00014231507,0.0003369661,0.0007772084,0.0000011969222],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006453944,0.005050226,0.9802361,0.00028155188,0.001158412,0.00001361369,0.00058094633,0.0000046821497,0.0053335805,0.000009316261,0.000048560818,0.0008290313],"study_design_scores_gemma":[0.024736896,0.0032845815,0.967849,0.0011048752,0.0009132477,0.000017991062,0.00047337095,0.000026869837,0.0012992297,0.000045901455,0.0000071758304,0.0002408673],"about_ca_topic_score_codex":0.0003740755,"about_ca_topic_score_gemma":0.0011695977,"teacher_disagreement_score":0.018282952,"about_ca_system_score_codex":0.00013237968,"about_ca_system_score_gemma":0.0003300365,"threshold_uncertainty_score":0.9999818},"labels":[],"label_agreement":null},{"id":"W4413139608","doi":"10.1007/s40121-025-01209-z","title":"A Cost-Effectiveness Analysis of the Switch to 20-Valent Pneumococcal Conjugate Vaccine from Lower-Valent Pneumococcal Conjugate Vaccines in the French Pediatric Population","year":2025,"lang":"en","type":"article","venue":"Infectious Diseases and Therapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"Pfizer","keywords":"Medicine; Pneumococcal conjugate vaccine; Pediatrics; Pneumonia; Population; Otitis; Vaccination; Cost effectiveness; Internal medicine; Streptococcus pneumoniae; Environmental health; Surgery; Immunology","score_opus":0.015956307014993017,"score_gpt":0.3085927017758631,"score_spread":0.2926363947608701,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413139608","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939125,0.0013792345,0.00012519283,0.0012785766,0.00060376286,0.0023355049,0.00017361244,0.00006769105,0.00012393657],"genre_scores_gemma":[0.9969848,0.0010663937,9.407807e-7,0.0012035829,0.00019015704,0.00045946857,0.000048286558,0.00002020364,0.000026211655],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978562,0.00046927956,0.0005698397,0.0004924565,0.00029663616,0.00031558046],"domain_scores_gemma":[0.99832886,0.0005508627,0.00018801303,0.0005949562,0.00018111167,0.00015620643],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030344655,0.00033188995,0.00072993146,0.00062385236,0.00028682192,0.00006255368,0.00018087288,0.00013419068,0.000054820397],"category_scores_gemma":[0.00011204221,0.0001952844,0.0004668084,0.0024033166,0.00004536342,0.00008646802,0.00007377837,0.0002845778,0.0000042644274],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003162879,0.0010282655,0.98612297,0.00007332056,0.0008207429,0.000011792314,0.000186773,0.0016726587,0.0065303217,0.00006753743,0.00004891533,0.003120409],"study_design_scores_gemma":[0.003097102,0.00046466323,0.99184936,0.000093794806,0.0020358267,0.0000067096,0.000044701348,0.00044576076,0.00020901195,0.0005305537,0.0010263433,0.0001961881],"about_ca_topic_score_codex":0.0017862623,"about_ca_topic_score_gemma":0.0009796197,"teacher_disagreement_score":0.0063213096,"about_ca_system_score_codex":0.000115084076,"about_ca_system_score_gemma":0.00012294226,"threshold_uncertainty_score":0.7963467},"labels":[],"label_agreement":null},{"id":"W4413188642","doi":"10.3390/healthcare13161982","title":"The Global, Regional, and National Burden of Lower Respiratory Infections Caused by Streptococcus pneumoniae Between 1990 and 2021","year":2025,"lang":"en","type":"article","venue":"Healthcare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Centre Scientifique et Technique du Bâtiment; Natural Science Foundation of Chongqing","keywords":"Epidemiology; Streptococcus pneumoniae; Demography; Medicine; Burden of disease; Disease burden; Autoregressive integrated moving average; Population; Public health; Gerontology; Environmental health; Geography; Biology; Internal medicine; Time series; Statistics; Pathology","score_opus":0.0287238960996189,"score_gpt":0.34740086282184435,"score_spread":0.31867696672222545,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413188642","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9533518,0.0038750782,0.000014830299,0.04027682,0.00019537241,0.0005846748,0.00020357115,0.000039648574,0.001458203],"genre_scores_gemma":[0.9972726,0.00067116995,0.0000018370955,0.0015086657,0.00016485633,0.00006643045,0.000018629149,0.000008323468,0.00028748493],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988717,0.00011073537,0.00032932108,0.00024762726,0.00024148969,0.00019914485],"domain_scores_gemma":[0.9989369,0.00024909925,0.00009903118,0.00021575722,0.00033650413,0.00016272334],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022799891,0.00012953885,0.00023034611,0.000094347,0.0005051697,0.00002390885,0.000049230563,0.00014932838,0.000009985843],"category_scores_gemma":[0.00015486275,0.000098727935,0.000054823497,0.00039315387,0.0002664166,0.00005131348,0.000050702663,0.0002460854,0.0000033697875],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013302978,0.000067444154,0.97185344,0.0002320366,0.00014874559,0.0000053903454,0.000088412795,0.000002576592,0.002771484,0.0035420114,0.014866061,0.006409079],"study_design_scores_gemma":[0.0005716481,0.00032308415,0.56118774,0.00017447773,0.00005388412,0.000005313429,0.00020459764,0.000009319862,0.000054028515,0.0007400941,0.43659538,0.00008042125],"about_ca_topic_score_codex":0.00023828313,"about_ca_topic_score_gemma":0.0003424362,"teacher_disagreement_score":0.42172933,"about_ca_system_score_codex":0.00015116321,"about_ca_system_score_gemma":0.00060031656,"threshold_uncertainty_score":0.40260082},"labels":[],"label_agreement":null},{"id":"W4413275132","doi":"10.1016/j.jcv.2025.105856","title":"Impact on hospital length of stay and antimicrobial usage in children diagnosed with viral meningitis by rapid multiplexed PCR assay","year":2025,"lang":"en","type":"article","venue":"Journal of Clinical Virology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Health Libraries Association","keywords":"Viral meningitis; Antimicrobial; Meningitis; Medicine; Virology; Pediatrics; Bacterial meningitis; Microbiology; Biology","score_opus":0.010848277517788895,"score_gpt":0.34422072763202244,"score_spread":0.33337245011423355,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413275132","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99742025,0.0000938181,0.00005117823,0.0017915776,0.00024765282,0.00021737897,0.000028302278,0.000006474089,0.00014335498],"genre_scores_gemma":[0.9984884,0.00036665556,0.00009961265,0.0008363684,0.00016464875,0.0000018073598,0.000004014922,0.000010942977,0.00002754861],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99803656,0.00037853653,0.0010471783,0.00018237904,0.00014358397,0.00021176778],"domain_scores_gemma":[0.99800545,0.0010855464,0.00053082476,0.000143248,0.00008849036,0.0001464483],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009743918,0.00015326745,0.0009138445,0.00025454108,0.000036597306,0.000007894498,0.0000886345,0.00025923466,0.000036241898],"category_scores_gemma":[0.0009674408,0.00009598206,0.0002379629,0.00013958626,0.0003313015,0.0000742968,0.000030057645,0.00085905276,0.0000013958753],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019396408,0.0014673655,0.9647061,0.000008872565,0.0005132678,0.00011829696,0.000043037035,0.000026206537,0.024435665,0.000007820061,0.0013761271,0.005357557],"study_design_scores_gemma":[0.010716618,0.014232183,0.9728874,0.000118497665,0.00017054773,0.00015144123,0.000011805438,0.000028700713,0.0011002925,0.000013595588,0.00048727516,0.00008165393],"about_ca_topic_score_codex":0.000026911857,"about_ca_topic_score_gemma":0.000010760753,"teacher_disagreement_score":0.023335373,"about_ca_system_score_codex":0.00003087098,"about_ca_system_score_gemma":0.00019943039,"threshold_uncertainty_score":0.39140347},"labels":[],"label_agreement":null},{"id":"W4413279346","doi":"10.3389/fmicb.2025.1642658","title":"Evolving genomic landscape of pediatric pneumococcus in two Canadian urban centers following conjugate vaccination","year":2025,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Children's Hospital; Alberta Health Services; University of Calgary; Sinai Health System; University of Toronto; Cegep de Saint Hyacinthe; Public Health Ontario","funders":"Canadian Institutes of Health Research; Joint Programming Initiative on Antimicrobial Resistance","keywords":"Conjugate; Vaccination; Pneumococcal conjugate vaccine; Virology; Biology; Genetics; Geography; Streptococcus pneumoniae; Medicine; Antibiotics","score_opus":0.005007892769075725,"score_gpt":0.2480100263042952,"score_spread":0.24300213353521946,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413279346","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940052,0.0013846402,0.00012850409,0.00043148248,0.0019095527,0.00033780214,0.00001880957,0.000014873801,0.0017691469],"genre_scores_gemma":[0.99905854,0.000082094346,0.00016299695,0.0004348701,0.00005103671,0.000014711248,0.00004367053,0.000009603449,0.00014244839],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99899167,0.000090666486,0.0003447738,0.00022590127,0.00002059709,0.00032640403],"domain_scores_gemma":[0.9996587,0.000029286466,0.000066260196,0.000149974,0.00003260385,0.000063157764],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019998496,0.00011748979,0.00034820376,0.0014508711,0.00004719137,0.000005275557,0.00009474138,0.00012318471,0.000025315774],"category_scores_gemma":[0.00006598453,0.000118451324,0.000089365036,0.0005184641,0.000023276412,0.000041676678,0.000024677764,0.00022965198,0.0000047565627],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019994763,0.000035064288,0.8851128,0.000032784017,0.00004132144,0.00003243248,0.00012821876,0.000045853412,0.10954344,0.000014254818,0.004792634,0.0002011653],"study_design_scores_gemma":[0.0035131082,0.00008594347,0.9875172,0.0000801679,0.00010717416,0.000016688082,0.0002754536,0.00036063395,0.0014053002,0.000073989904,0.0063995128,0.00016486802],"about_ca_topic_score_codex":0.0056415903,"about_ca_topic_score_gemma":0.024310634,"teacher_disagreement_score":0.10813814,"about_ca_system_score_codex":0.0004121766,"about_ca_system_score_gemma":0.00040052945,"threshold_uncertainty_score":0.99349314},"labels":[],"label_agreement":null},{"id":"W4413317244","doi":"10.1097/inf.0000000000004913","title":"Safety and Immunogenicity of a Pneumococcal Conjugate Vaccine When Administered Concomitantly With Routine Pediatric Vaccines in Healthy Toddlers and Infants","year":2025,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Immunogenicity; Medicine; Pneumococcal conjugate vaccine; Streptococcus pneumoniae; Pediatrics; Pneumococcal infections; Virology; Immunology; Antigen; Biology; Microbiology; Antibiotics","score_opus":0.007169419709790253,"score_gpt":0.2585234675898444,"score_spread":0.25135404788005417,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413317244","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9927856,0.0033273124,0.000084085994,0.0024971943,0.00025622442,0.00067295315,0.00003049531,0.000039706472,0.00030642856],"genre_scores_gemma":[0.9911616,0.0076620798,0.000013020994,0.0006563984,0.00040675735,0.000017660619,0.0000026200876,0.000020958492,0.000058890757],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99801797,0.00025388537,0.0008401136,0.00027308383,0.00023182375,0.00038310455],"domain_scores_gemma":[0.99827605,0.00039788845,0.0004144196,0.00028214007,0.00022914748,0.000400331],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00064714276,0.00028214298,0.000603933,0.00062052463,0.00041058467,0.00005061714,0.00010379759,0.00010173225,0.00003484875],"category_scores_gemma":[0.00035374184,0.00017952143,0.00011794758,0.0007475962,0.00008320074,0.00014397185,0.00009848705,0.00066528894,0.0000017215915],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005005405,0.00030617559,0.99327624,0.0002978512,0.00013803461,0.00008029544,0.000246181,0.000042879667,0.00014059759,0.000041844,0.000056343415,0.0003681317],"study_design_scores_gemma":[0.010232737,0.0011665932,0.98524874,0.000069792564,0.0013124429,0.0011064241,0.00010522419,0.00012492428,0.0000068200243,0.0002898596,0.00016157191,0.00017486948],"about_ca_topic_score_codex":0.00007620738,"about_ca_topic_score_gemma":0.00010478104,"teacher_disagreement_score":0.008027521,"about_ca_system_score_codex":0.00011848631,"about_ca_system_score_gemma":0.0009187361,"threshold_uncertainty_score":0.73206717},"labels":[],"label_agreement":null},{"id":"W4413389111","doi":"10.1097/inf.0000000000004946","title":"Mycoplasma pneumoniae: Extrapulmonary Manifestations in Children With Focus on Mucocutaneous Disease","year":2025,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Children's Hospital; University of Calgary","funders":"","keywords":"Mycoplasma pneumoniae; Medicine; Immunology; Pneumonia; Mucocutaneous zone; Disease; Serology; Respiratory tract infections; Outbreak; Virology; Antibody; Internal medicine; Respiratory system","score_opus":0.004605076130770756,"score_gpt":0.2397061845920834,"score_spread":0.23510110846131263,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413389111","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.990113,0.00046891518,0.00014427934,0.004494291,0.00036079384,0.00079258345,0.000043582928,0.00013433499,0.0034482135],"genre_scores_gemma":[0.99655277,0.00080447306,0.00000642913,0.0011705622,0.000722313,0.000093216346,0.000008257163,0.00003750661,0.0006044865],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99815375,0.00020304987,0.00043442717,0.0003149806,0.00042671635,0.00046707236],"domain_scores_gemma":[0.9983814,0.00023635682,0.00017495715,0.0004396548,0.00014128377,0.0006263473],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021588957,0.00031029788,0.00026336883,0.0008470833,0.0007945765,0.00009567151,0.00016445522,0.000073921525,0.000093989554],"category_scores_gemma":[0.00021235824,0.00019823683,0.00022506624,0.0010160906,0.000110300614,0.0001251725,0.00004040656,0.0009743135,0.00007994098],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043636296,0.0010692888,0.99173206,0.00004210805,0.00014517075,0.0021368351,0.000053572156,0.0024356158,0.000026035052,0.0003359175,0.00061913836,0.00096788094],"study_design_scores_gemma":[0.0019517768,0.00039204455,0.98101205,0.000094102055,0.001298234,0.011612165,0.00003541649,0.00021421834,0.0000016725351,0.0029396832,0.00021551769,0.00023311535],"about_ca_topic_score_codex":0.000024542118,"about_ca_topic_score_gemma":0.000027775317,"teacher_disagreement_score":0.01072002,"about_ca_system_score_codex":0.00027978,"about_ca_system_score_gemma":0.0012289098,"threshold_uncertainty_score":0.8083863},"labels":[],"label_agreement":null},{"id":"W4413770330","doi":"10.1093/jac/dkaf219","title":"Comparison of antimicrobial resistance and serotype patterns in <i>Streptococcus pneumoniae</i> from blood cultures and respiratory specimens in Canadian hospitals from the CANWARD study (2007–23)","year":2025,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Queen Elizabeth II Health Sciences Centre; Public Health Agency of Canada; University of Manitoba; Shared Health; Health Sciences Centre; Manitoba Health","funders":"Sandoz Canada; Merck Canada; University of Manitoba; Cell Science Research Foundation; Pfizer","keywords":"Streptococcus pneumoniae; Microbiology; Serotype; Blood culture; Antimicrobial; Antibiotic resistance; Biology; Medicine; Virology; Antibiotics","score_opus":0.010131799169805753,"score_gpt":0.29907781449722715,"score_spread":0.28894601532742137,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413770330","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.992865,0.00081668777,0.0000028780364,0.0051325806,0.00029942262,0.00062638323,0.00013705262,0.0000066897464,0.00011328983],"genre_scores_gemma":[0.99555296,0.00046747678,0.000047430505,0.0036662577,0.00019061333,0.000003178671,0.000005567677,0.00002140506,0.000045110137],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99816453,0.00016219879,0.00090225786,0.00028756505,0.00016970646,0.00031376356],"domain_scores_gemma":[0.9989028,0.0001339612,0.00038727178,0.00027006163,0.00015011657,0.00015576462],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036130802,0.00024919718,0.00081153726,0.0003139617,0.00010759494,0.000055975317,0.00018791638,0.00017342198,0.000026902835],"category_scores_gemma":[0.00005651128,0.0001855383,0.00010034259,0.00033722195,0.00015528852,0.000101032565,0.000032885513,0.00060957856,7.2233235e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016602203,0.0004092384,0.679612,0.000025980831,0.00018231096,0.00008482044,0.0017220372,0.000007233688,0.31382835,0.0000016346232,0.0038600941,0.000100291174],"study_design_scores_gemma":[0.005472159,0.0002949096,0.93062866,0.00090346194,0.00014944072,0.000010953244,0.0008168073,0.0000021140609,0.053961262,0.000011727621,0.007586176,0.00016235288],"about_ca_topic_score_codex":0.02888607,"about_ca_topic_score_gemma":0.26249602,"teacher_disagreement_score":0.2598671,"about_ca_system_score_codex":0.00013207714,"about_ca_system_score_gemma":0.0005280945,"threshold_uncertainty_score":0.97758067},"labels":[],"label_agreement":null},{"id":"W4413861290","doi":"10.1016/j.vaccine.2025.127453","title":"The impact of pneumococcal vaccination and nasopharyngeal colonization on the performance of a serotype-specific urine antigen detection (SSUAD) assay","year":2025,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Nova Scotia Health Authority; Dalhousie University","funders":"Merck Sharp and Dohme; Merck","keywords":"Serotype; Vaccination; Antigen; Colonization; Streptococcus pneumoniae; Urine; Virology; Medicine; Pneumococcal infections; Immunology; Microbiology; Biology; Antibiotics; Internal medicine","score_opus":0.010510109601486378,"score_gpt":0.2765780348222621,"score_spread":0.2660679252207757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413861290","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973221,0.00021454578,0.00009963863,0.0011601669,0.00013779166,0.00050022575,0.000003865563,0.000022873499,0.00053882494],"genre_scores_gemma":[0.99888974,0.0007691541,0.0000027363806,0.00004237469,0.000061737424,0.00002204158,0.0000048937563,0.000008525211,0.00019877974],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99929273,0.00007969626,0.0002640744,0.00012752881,0.00011887382,0.000117086944],"domain_scores_gemma":[0.99917495,0.00021217052,0.00013532699,0.00023664495,0.00021060609,0.000030306472],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035826195,0.000106174884,0.00018136275,0.00014572544,0.00023448662,0.000011299128,0.00006249435,0.00006720162,0.000035948415],"category_scores_gemma":[0.00011526083,0.000054604403,0.0000696717,0.00053346023,0.00001682975,0.000057067366,0.000026504518,0.00015951227,0.000003295508],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005663216,0.000204439,0.43060446,0.0000883275,0.00015897467,9.096625e-7,0.00009445413,0.00031369945,0.55211884,0.00040718,0.0002986162,0.015143768],"study_design_scores_gemma":[0.00079925085,0.001008859,0.92214423,0.000067160574,0.000034095025,0.000010793983,0.000021708198,0.004005548,0.070680626,0.000028646464,0.0011573526,0.00004169575],"about_ca_topic_score_codex":0.000018339817,"about_ca_topic_score_gemma":0.00001736158,"teacher_disagreement_score":0.4915398,"about_ca_system_score_codex":0.000063872794,"about_ca_system_score_gemma":0.00006570433,"threshold_uncertainty_score":0.22267029},"labels":[],"label_agreement":null},{"id":"W4413895884","doi":"10.1002/hsr2.71127","title":"Recovery Rate of Children From Pneumonia and Its Predictors in Ethiopia: A Systematic Review and Meta‐Analysis","year":2025,"lang":"en","type":"review","venue":"Health Science Reports","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Meta-analysis; Medicine; Checklist; Pneumonia; Cohort study; Pediatrics; Publication bias; Internal medicine; Demography; Psychology","score_opus":0.04842867473959837,"score_gpt":0.38637579813861733,"score_spread":0.33794712339901894,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413895884","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00035309864,0.9945635,0.000002603726,0.00045330598,0.00010647202,0.0043770676,0.0000633816,0.000025577201,0.000054943823],"genre_scores_gemma":[0.00043705874,0.99814445,0.000016819362,0.0008743103,0.000011897887,0.00032597905,0.000026785365,0.000011701897,0.00015099296],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9955528,0.00038426564,0.0024154538,0.0008834822,0.00040778512,0.00035621773],"domain_scores_gemma":[0.9963947,0.0002886499,0.0020333952,0.0007660566,0.00016017458,0.00035700796],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0046844124,0.00035594896,0.007952075,0.0012981513,0.00016359151,0.000027580145,0.00011805062,0.00018972912,0.000015297488],"category_scores_gemma":[0.0011147093,0.00022634484,0.0006570834,0.0038713033,0.00019799544,0.00013447847,0.00012229999,0.00045490268,0.0000010231864],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[4.3717645e-7,0.000040720843,0.0012056925,0.98922145,0.008891441,0.000056783952,0.000028757477,4.7738166e-7,0.0000011517939,0.000005221384,0.000010693017,0.0005371541],"study_design_scores_gemma":[0.00007909891,0.00013785488,0.0060094567,0.36957783,0.6210283,0.0011738851,0.0000064103724,0.000004136104,8.572093e-7,0.000017042457,0.001695323,0.0002697917],"about_ca_topic_score_codex":0.00032310584,"about_ca_topic_score_gemma":0.00007715965,"teacher_disagreement_score":0.6196436,"about_ca_system_score_codex":0.00016410963,"about_ca_system_score_gemma":0.0036811682,"threshold_uncertainty_score":0.9230075},"labels":[],"label_agreement":null},{"id":"W4414021491","doi":"10.12688/verixiv.1960.1","title":"Nasopharyngeal carriage of Streptococcus pneumoniae in Vietnamese children over the first five years of life","year":2025,"lang":"en","type":"article","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Health and Medical Research Council","keywords":"Carriage; Vietnamese; Streptococcus pneumoniae; Medicine; Microbiology; Biology; Philosophy; Pathology; Linguistics","score_opus":0.0060213886114965495,"score_gpt":0.2598822128719546,"score_spread":0.2538608242604581,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414021491","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9922688,0.00015771337,0.0000033249569,0.0012233333,0.0001118569,0.0005312107,0.000024298679,0.000020089818,0.0056593684],"genre_scores_gemma":[0.9983583,0.00003498033,0.0000035046587,0.00093871367,0.000037028713,0.000028620714,0.0000037483342,0.000007457231,0.00058764935],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99920017,0.000034340745,0.00033228312,0.00014971016,0.00014538426,0.00013809181],"domain_scores_gemma":[0.9993866,0.000099734236,0.00007983844,0.00033310978,0.000049992923,0.0000507189],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000121782454,0.000094279974,0.00029853996,0.0001732925,0.00003666241,0.000004109337,0.00011315892,0.000082510305,0.00016273819],"category_scores_gemma":[0.00013293955,0.00006435081,0.00012902594,0.00043036146,0.00012618568,0.00003537802,0.00006438322,0.00019282613,0.00000690199],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025302017,0.0002049265,0.9910555,0.000060891092,0.00013480554,0.000006265915,0.0004513291,0.000060123086,0.0053361687,0.00045768064,0.0014857455,0.0007212888],"study_design_scores_gemma":[0.0012005459,0.00011641997,0.99560755,0.000104956925,0.000055265304,0.0000018432735,0.00016946046,0.000058886093,0.0008219467,0.00003445495,0.0017771022,0.000051567786],"about_ca_topic_score_codex":0.000419085,"about_ca_topic_score_gemma":0.0004907005,"teacher_disagreement_score":0.006089493,"about_ca_system_score_codex":0.00003262548,"about_ca_system_score_gemma":0.00020983363,"threshold_uncertainty_score":0.262415},"labels":[],"label_agreement":null},{"id":"W4414052104","doi":"10.2196/70246","title":"Pay-It-Forward 23-Valent Pneumococcal Polysaccharide Vaccination Among Older Adults: Protocol for a Randomized Controlled Trial","year":2025,"lang":"en","type":"article","venue":"JMIR Research Protocols","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; China Scholarship Council; National Natural Science Foundation of China","keywords":"Randomized controlled trial; Vaccination; Protocol (science); Pneumococcal vaccine; Intention-to-treat analysis; Pneumococcal polysaccharide vaccine; Pneumococcal vaccination","score_opus":0.06750182639553226,"score_gpt":0.5063433994156378,"score_spread":0.4388415730201055,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414052104","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0017276406,9.010378e-7,0.00061612064,0.0042028762,0.000056997073,0.9886998,0.000011570331,0.00021992499,0.0044641746],"genre_scores_gemma":[0.0029439628,6.41363e-7,0.00005848337,0.00036013935,0.00057951163,0.9862804,0.000012615665,0.000055808192,0.009708444],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9936979,0.0016895243,0.0016187076,0.0007917394,0.0011837899,0.0010183741],"domain_scores_gemma":[0.9948204,0.0020049848,0.00036669534,0.00077073975,0.001654557,0.0003826121],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.005978624,0.00041687302,0.0019207733,0.001118742,0.00062571175,0.00022554374,0.00036313254,0.0004410354,0.00033175928],"category_scores_gemma":[0.0042860927,0.0002503956,0.0011766959,0.0009247806,0.00027754737,0.00025873474,0.0001650224,0.0011961116,0.00006306177],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.971813,0.0028245926,0.0007948065,0.002398622,0.0003527158,0.00001628184,0.0001723971,0.000002818329,0.004439146,0.00048656636,0.0133344745,0.0033645653],"study_design_scores_gemma":[0.90420866,0.0024641517,0.0017524762,0.0050972924,0.000052381274,0.000003746078,0.00008866839,0.0010237325,0.002110211,0.00038326182,0.08258333,0.00023207968],"about_ca_topic_score_codex":0.00001391782,"about_ca_topic_score_gemma":0.000015359474,"teacher_disagreement_score":0.069248855,"about_ca_system_score_codex":0.00039017992,"about_ca_system_score_gemma":0.0014972948,"threshold_uncertainty_score":0.9999948},"labels":[],"label_agreement":null},{"id":"W4414540509","doi":"10.7759/cureus.93292","title":"Association Between Elevated Neutrophil-to-Lymphocyte Ratio and Mortality Risk in Community-Acquired Pneumonia: A Systematic Review and Meta-Analysis","year":2025,"lang":"en","type":"review","venue":"Cureus","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Observational study; Meta-analysis; Biomarker; Risk of mortality; Risk assessment; Risk stratification; Pneumonia; Relative risk","score_opus":0.08150849660554202,"score_gpt":0.3796845433907008,"score_spread":0.29817604678515874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414540509","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00029275462,0.99410254,0.000024709825,0.00027271823,0.000041454467,0.004589621,0.00051792536,0.0000666571,0.000091600734],"genre_scores_gemma":[0.0005234474,0.9969008,0.0000095658725,0.00058342656,0.00003073937,0.0010484279,0.00026632287,0.000030880925,0.0006064185],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9933538,0.0038455517,0.0017101301,0.00046828148,0.00032383934,0.00029839698],"domain_scores_gemma":[0.9960876,0.0011777846,0.0011659488,0.001140509,0.00020552738,0.00022264721],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0026080154,0.00057001,0.010478317,0.0006018763,0.00027434196,0.00006946547,0.00019828122,0.00046733607,0.00003061995],"category_scores_gemma":[0.0019074981,0.00040140294,0.0014118027,0.0023564408,0.000044397795,0.0000872977,0.00016771762,0.000735464,0.000014000794],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[9.4700164e-7,0.00008762621,0.0024721175,0.78292435,0.21402982,0.000011952403,0.00007154905,9.581299e-7,0.0000018338039,0.000006928769,0.000045907975,0.00034598302],"study_design_scores_gemma":[0.0002077768,0.000078481564,0.002852141,0.031982433,0.9551846,0.000012812754,0.000011811512,0.0000035589876,2.5827325e-7,0.000010604516,0.009366267,0.0002892588],"about_ca_topic_score_codex":0.00055159227,"about_ca_topic_score_gemma":0.000584976,"teacher_disagreement_score":0.75094193,"about_ca_system_score_codex":0.0006683461,"about_ca_system_score_gemma":0.0003062696,"threshold_uncertainty_score":0.9998438},"labels":[],"label_agreement":null},{"id":"W4414590595","doi":"10.1080/21645515.2025.2562738","title":"Multidimensional analysis of costs and outcomes in a Colombian cohort of pediatric <i>Streptococcus pneumoniae</i> meningitis cases (2017–2022)","year":2025,"lang":"en","type":"article","venue":"Human Vaccines & Immunotherapeutics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Misericordia Community Hospital","funders":"","keywords":"Cohort; Meningitis; Vaccination; Cohort study; Health care; Retrospective cohort study; Public health; Cluster (spacecraft)","score_opus":0.017525946974141983,"score_gpt":0.3203680638590659,"score_spread":0.3028421168849239,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414590595","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99717647,0.001647925,0.000010125545,0.00018769657,0.00009270378,0.00054152776,0.00004862906,0.000032232263,0.00026270366],"genre_scores_gemma":[0.9985988,0.0005575577,0.00002704969,0.00026834215,0.000016757966,0.000047302274,0.000029079083,0.000018170611,0.00043691313],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984229,0.00007797778,0.00076793897,0.00029260578,0.000208694,0.00022985108],"domain_scores_gemma":[0.9986987,0.00032589334,0.00027326337,0.00042908447,0.00021922642,0.000053810414],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021352466,0.00022758155,0.00092224265,0.0012275394,0.00011551126,0.000009097588,0.00009320717,0.00014207134,0.00007179634],"category_scores_gemma":[0.00005751957,0.00020062794,0.000239013,0.0013323635,0.00008618803,0.00005267225,0.00006474354,0.00019875517,0.0000012190743],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004597424,0.00046293953,0.89343613,0.00008064528,0.0019544158,0.0000332369,0.0001545432,0.000042580636,0.1030701,0.00020668036,0.000032071683,0.00048069932],"study_design_scores_gemma":[0.002106115,0.00027832092,0.9908971,0.00006282617,0.0033643853,0.000017641023,0.00011260113,0.000143289,0.0023255676,0.00001684438,0.00052622403,0.0001490657],"about_ca_topic_score_codex":0.00032411437,"about_ca_topic_score_gemma":0.00061095046,"teacher_disagreement_score":0.10074454,"about_ca_system_score_codex":0.000083187144,"about_ca_system_score_gemma":0.00012387808,"threshold_uncertainty_score":0.818137},"labels":[],"label_agreement":null},{"id":"W4415050225","doi":"10.1101/2025.10.10.25337708","title":"The impact of vaccine products, schedules and geographic regions on immunogenicity of pneumococcal vaccines in children under 2 years old: a systematic review and meta-analysis","year":2025,"lang":"en","type":"review","venue":"medRxiv","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Global Health Research","funders":"Institute of Infection and Immunity; China Scholarship Council; Department of Foreign Affairs and Trade, Australian Government","keywords":"Immunogenicity; Serotype; Vaccination; Antibody response; Vaccination schedule; Antibody","score_opus":0.034474904500368275,"score_gpt":0.3468575225168599,"score_spread":0.31238261801649164,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415050225","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0265048,0.96963555,0.0000012207522,0.00032621855,0.00001404066,0.0034277523,0.00006846884,0.0000143243215,0.000007647664],"genre_scores_gemma":[0.013211638,0.986279,0.0000043486543,0.000045758374,0.000012121237,0.00030491705,0.000023781491,0.000021889877,0.00009652944],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9969711,0.00074459874,0.0014052498,0.0004510579,0.00021307863,0.00021491873],"domain_scores_gemma":[0.99722797,0.00054144266,0.00083949394,0.0011448854,0.00016539652,0.00008083541],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011789043,0.00043526935,0.0066865734,0.001000789,0.00007861443,0.000015107078,0.00021182396,0.00017657736,0.000012945381],"category_scores_gemma":[0.00076065614,0.000206595,0.0022416203,0.0026746925,0.00009738272,0.000032518503,0.000093813986,0.00042452363,0.0000010777206],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011235668,0.00030594788,0.02338731,0.72989875,0.2456059,0.0000053154367,0.000014924957,0.000004096686,0.000016589605,0.00030630964,0.000012858182,0.000430756],"study_design_scores_gemma":[0.00026604522,0.00020325468,0.12842685,0.048960257,0.82155895,0.000114463015,0.000006445146,9.3499784e-7,0.0000014929105,0.00003221466,0.00022569239,0.0002033803],"about_ca_topic_score_codex":0.00013423238,"about_ca_topic_score_gemma":0.00004208094,"teacher_disagreement_score":0.6809385,"about_ca_system_score_codex":0.000037361362,"about_ca_system_score_gemma":0.00021775326,"threshold_uncertainty_score":0.84246993},"labels":[],"label_agreement":null},{"id":"W4415103890","doi":"10.1016/j.ajem.2025.10.006","title":"Cephalexin use in a pediatric emergency department during the shortage of amoxicillin suspension","year":2025,"lang":"en","type":"article","venue":"The American Journal of Emergency Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Children's Hospital of Eastern Ontario","funders":"","keywords":"Amoxicillin; Economic shortage; Antimicrobial stewardship; Pharyngitis; Emergency department; Suspension (topology)","score_opus":0.02993548970447232,"score_gpt":0.3342656105042177,"score_spread":0.3043301207997454,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415103890","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99037915,0.0017126394,0.00008188615,0.0054192115,0.0015332308,0.00030898568,0.0000026040466,0.000009204818,0.00055307074],"genre_scores_gemma":[0.9864068,0.011999338,0.000013857127,0.00020488986,0.0005680492,0.000008277725,0.0000010355632,0.0000148372355,0.00078293105],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99740094,0.00026897225,0.0014224303,0.00015171267,0.00048078282,0.0002751915],"domain_scores_gemma":[0.9980507,0.0001809299,0.0008979808,0.00043007854,0.00032147724,0.00011884966],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00096635864,0.00019203252,0.00064983236,0.0005146165,0.0001288391,0.0000015669909,0.00026734718,0.000032545733,0.00050417293],"category_scores_gemma":[0.0006266436,0.00009183126,0.00023906554,0.0019127656,0.00025387795,0.00007775785,0.000054061325,0.0004981475,0.0000031964228],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043839513,0.00029803085,0.9137506,0.00009671964,0.00018698987,0.00006953525,0.00073966075,0.00015956494,0.08049166,0.0000824611,0.0030712804,0.00061512814],"study_design_scores_gemma":[0.0009275692,0.0011357653,0.99273974,0.00017299806,0.00050495216,0.00008013638,0.0011070309,0.000025965903,0.0005867119,0.000111931484,0.0025226232,0.00008460684],"about_ca_topic_score_codex":0.00016340408,"about_ca_topic_score_gemma":0.00016674082,"teacher_disagreement_score":0.07990495,"about_ca_system_score_codex":0.00007871862,"about_ca_system_score_gemma":0.00014571703,"threshold_uncertainty_score":0.552034},"labels":[],"label_agreement":null},{"id":"W4415358267","doi":"10.2174/0115733963359810251003101314","title":"Multiplexed PCR Diagnosis of Bacterial Atypical Pneumonias in the After COVID Era","year":2025,"lang":"en","type":"article","venue":"Current Pediatric Reviews","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Children's Hospital; University of Calgary","funders":"","keywords":"Doxycycline; Mycoplasma pneumoniae; Chlamydia; Pneumonia; Mycoplasma; Atypical pneumonia; Streptococcus pneumoniae; Tetracycline","score_opus":0.04609106419965169,"score_gpt":0.35679590995726346,"score_spread":0.31070484575761176,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415358267","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94116694,0.052935805,0.000029228193,0.001883282,0.0018151093,0.0018002926,0.000024027453,0.000025090154,0.00032025485],"genre_scores_gemma":[0.90440786,0.09190187,0.000041442447,0.0010642426,0.0011043211,0.0013829551,0.000029128058,0.000012235154,0.00005595984],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981812,0.00035972998,0.0007943879,0.0002608663,0.00018106384,0.00022273441],"domain_scores_gemma":[0.9989607,0.00028637005,0.00016788863,0.00044569524,0.00005355722,0.00008580139],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00059050263,0.00018501778,0.0005763147,0.00025236604,0.00005416137,0.000016458811,0.00016980004,0.000091897564,0.00023156527],"category_scores_gemma":[0.00087249296,0.00010879299,0.00031404785,0.00088740065,0.00006067672,0.000055178556,0.000055048866,0.00040220676,0.0000875256],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000090170055,0.00073741825,0.94829714,0.00133437,0.000012385194,0.000012847156,0.0002181328,7.257446e-7,0.00045548388,0.00006389647,0.014157677,0.03461973],"study_design_scores_gemma":[0.0006960964,0.0000643479,0.40145433,0.00017067116,0.00022912072,0.0000047342787,0.000008670288,0.0000032859202,0.000018724028,0.000017950862,0.59725595,0.000076097545],"about_ca_topic_score_codex":0.000004584227,"about_ca_topic_score_gemma":0.00001532843,"teacher_disagreement_score":0.5830983,"about_ca_system_score_codex":0.000058030248,"about_ca_system_score_gemma":0.00019376118,"threshold_uncertainty_score":0.44364494},"labels":[],"label_agreement":null},{"id":"W4415526874","doi":"10.1513/annalsats.202506-652ps","title":"Community-acquired pneumonia in vulnerable populations across the Americas: ongoing barriers to prevention, diagnosis, and treatment","year":2025,"lang":"en","type":"article","venue":"Annals of the American Thoracic Society","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto; University of Saskatchewan; St. Michael's Hospital","funders":"American Lung Association","keywords":"Pneumonia; MEDLINE; Coronavirus disease 2019 (COVID-19); Pandemic; 2019-20 coronavirus outbreak; Population","score_opus":0.12330517980612019,"score_gpt":0.464432203867685,"score_spread":0.3411270240615648,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415526874","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96181214,0.00022951514,0.00007534429,0.03703194,0.00007959108,0.00056494685,0.000023911896,0.000030380555,0.00015223221],"genre_scores_gemma":[0.9884596,0.00064611307,0.00015256368,0.009886276,0.000023460214,0.0002446008,0.0000035738262,0.000012296728,0.0005715489],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99852693,0.0006011667,0.00029951613,0.0001660127,0.00013587224,0.00027050334],"domain_scores_gemma":[0.99871624,0.0002808278,0.00019198714,0.0005948017,0.00009519355,0.000120929406],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006266294,0.0001513107,0.00036305143,0.000044590837,0.001140693,0.000028111112,0.00017896836,0.000037504084,0.0000065885497],"category_scores_gemma":[0.00040690263,0.00009200405,0.0002820586,0.0012623147,0.0005794239,0.000058294983,0.00014514226,0.0002513255,0.000001453227],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005875885,0.00040142378,0.90087485,0.00004668198,0.00030560375,9.832911e-7,0.011998775,0.000449824,0.0070234253,0.00005565196,0.0037231427,0.07506087],"study_design_scores_gemma":[0.00030016873,0.0005120675,0.9513722,0.0002711505,0.00012176664,0.000008582365,0.023473902,0.00013627067,0.0033951467,0.00032291556,0.019959498,0.00012630835],"about_ca_topic_score_codex":0.0021249438,"about_ca_topic_score_gemma":0.0006604569,"teacher_disagreement_score":0.074934565,"about_ca_system_score_codex":0.000078592486,"about_ca_system_score_gemma":0.00015585609,"threshold_uncertainty_score":0.8773404},"labels":[],"label_agreement":null},{"id":"W4415648445","doi":"10.1093/jac/dkaf253","title":"Trends of serotypes and resistance among <i>Streptococcus pneumoniae</i> in the UK and Ireland (1999–2019)","year":2025,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Cerexa; Johnson and Johnson; British Society for Antimicrobial Chemotherapy; National Institute for Health and Care Research; Meso Scale Diagnostics; Nabriva Therapeutics; Astellas Pharma Canada; Wyeth; Pfizer; National Institute for Health Research Health Protection Research Unit; Novartis; University of Bristol; GlaxoSmithKline; AstraZeneca; Bayer; Abbott Fund","keywords":"Serotype; Antibiotic resistance; Epidemiology; Disease; Resistance (ecology); Respiratory disease","score_opus":0.005715942372080849,"score_gpt":0.2573783798347418,"score_spread":0.251662437462661,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415648445","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9871276,0.00055685145,0.00001507001,0.010504934,0.00009369253,0.00011429275,0.00000474538,0.0000039812103,0.0015788354],"genre_scores_gemma":[0.99593884,0.0013973276,0.00006214212,0.0019364639,0.00005933888,0.0000011168198,5.4044244e-7,0.000007701927,0.0005965091],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99924403,0.000047740752,0.00037979442,0.00010341677,0.00010557941,0.00011944283],"domain_scores_gemma":[0.9994678,0.00007327085,0.0002164101,0.00012597862,0.000076696706,0.000039857707],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028880103,0.000110777764,0.00033295224,0.00026869396,0.00005901936,0.00002324809,0.00007970303,0.00008746017,0.000009902719],"category_scores_gemma":[0.000020456688,0.000069838534,0.000089323716,0.0003482946,0.00019039649,0.000064864784,0.0000109708935,0.0002645383,1.7533833e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022373449,0.00015044649,0.5900152,0.00008906876,0.0000974586,0.000031744818,0.0005679838,0.0000023596124,0.39764884,0.000057553854,0.009535894,0.0015797253],"study_design_scores_gemma":[0.003923194,0.00027901545,0.92786306,0.0007218183,0.00009961378,0.00020378821,0.0001291069,0.000004036662,0.031154983,0.00009363853,0.035421573,0.00010618032],"about_ca_topic_score_codex":0.000012987721,"about_ca_topic_score_gemma":0.00008392491,"teacher_disagreement_score":0.36649385,"about_ca_system_score_codex":0.000017636137,"about_ca_system_score_gemma":0.000069644375,"threshold_uncertainty_score":0.2847933},"labels":[],"label_agreement":null},{"id":"W4415706697","doi":"10.1016/j.ijid.2025.108174","title":"Disease pattern and risk factors of antimicrobial resistance in patients with pneumococcal infection in the Hong Kong population","year":2025,"lang":"en","type":"article","venue":"International Journal of Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Merck Sharp and Dohme","keywords":"Serotype; Pneumococcal disease; Antibiotic resistance; Streptococcus pneumoniae; Disease; Population","score_opus":0.004227517983310977,"score_gpt":0.25037955172410337,"score_spread":0.2461520337407924,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415706697","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989031,0.000054470707,0.00013497054,0.0002493879,0.0003296587,0.0002074013,0.000041653206,0.000007805145,0.000071540315],"genre_scores_gemma":[0.99966073,0.00013238181,0.0000022649697,0.0001087405,0.00006145693,0.0000043464142,0.000018162935,0.0000066207313,0.0000052718165],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989518,0.00012328921,0.00042871374,0.00011103723,0.00029303518,0.00009212093],"domain_scores_gemma":[0.99909306,0.00012898083,0.00033581787,0.00008767702,0.000296101,0.00005838219],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012581941,0.00010948623,0.0002068876,0.0006157057,0.000049679078,0.000032208944,0.00007216403,0.0000382427,0.000005852638],"category_scores_gemma":[0.00030437548,0.00007162751,0.00009347756,0.00026769275,0.000065187116,0.0002160662,0.000019302805,0.00022047793,2.3884115e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034152865,0.0008316928,0.99737084,0.00005487898,0.00011709089,0.000027748078,0.00010210756,0.00038796777,0.00006457167,0.00003307002,0.000018820774,0.0006497001],"study_design_scores_gemma":[0.0024059583,0.00013307392,0.99638295,0.0006070403,0.00014590746,0.0000057365205,0.00002275155,0.000018311952,0.00002000412,0.00015801968,0.000038979044,0.00006124048],"about_ca_topic_score_codex":0.0003107397,"about_ca_topic_score_gemma":0.0008269632,"teacher_disagreement_score":0.0020644297,"about_ca_system_score_codex":0.0001446615,"about_ca_system_score_gemma":0.00010207327,"threshold_uncertainty_score":0.2920885},"labels":[],"label_agreement":null},{"id":"W4415893946","doi":"10.1186/s41479-025-00180-0","title":"Existence and relevance of fulminant severe community-acquired pneumonia","year":2025,"lang":"en","type":"article","venue":"Pneumonia","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital","funders":"Instituto de Salud Carlos III","keywords":"Fulminant; ARDS; Pneumonia; Incidence (geometry); Sepsis; Respiratory failure; Septic shock; Retrospective cohort study; Respiratory distress","score_opus":0.01787474645655817,"score_gpt":0.2940880290551536,"score_spread":0.2762132825985954,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415893946","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9839419,0.00056369056,0.00006467003,0.002558736,0.0002493776,0.0003203699,0.000017816783,0.00010104627,0.01218235],"genre_scores_gemma":[0.99562544,0.00040206735,0.00024876697,0.00089198933,0.000029231274,0.000033667442,0.0000055384394,0.00001806446,0.0027452526],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99875414,0.00014690722,0.00040306573,0.0002387168,0.00018037799,0.00027681468],"domain_scores_gemma":[0.99862874,0.0003204431,0.00012469155,0.0006403662,0.00015879367,0.000126947],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026490728,0.00020339813,0.0004582442,0.00019348679,0.0003323294,0.000017835462,0.00015534915,0.00013203587,0.000016987526],"category_scores_gemma":[0.00035048634,0.00017675947,0.00010043622,0.00046653918,0.000334942,0.00009730976,0.0001423823,0.0003553682,0.000017391123],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000091650436,0.0003934165,0.11044536,0.00079045375,0.000118335054,0.000045266715,0.0006661189,0.0000047038816,0.8703735,0.0026614824,0.00019459189,0.014215165],"study_design_scores_gemma":[0.0017028148,0.00074610615,0.906116,0.0012256547,0.00028712765,0.0005213763,0.0008102432,0.00024080877,0.018037561,0.0023047465,0.06764573,0.00036179973],"about_ca_topic_score_codex":0.000112955066,"about_ca_topic_score_gemma":0.000059650072,"teacher_disagreement_score":0.8523359,"about_ca_system_score_codex":0.000058615136,"about_ca_system_score_gemma":0.00015104526,"threshold_uncertainty_score":0.72080415},"labels":[],"label_agreement":null},{"id":"W4415930905","doi":"10.1080/20018525.2025.2569129","title":"Asthma is associated with increased <i>Streptococcus pneumoniae</i> carriage in the upper airway: a systematic review and meta-analysis","year":2025,"lang":"en","type":"review","venue":"European Clinical Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Universitas Padjadjaran; National Institute for Health and Care Research; Government of the United Kingdom","keywords":"Carriage; Asthma; Isolation (microbiology); Systematic review; Upper respiratory infections; Respiratory disease","score_opus":0.12204315355947608,"score_gpt":0.4099265558552396,"score_spread":0.28788340229576354,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415930905","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00004686714,0.9919605,0.000009853056,0.0006727161,0.00008573049,0.0038474684,0.00016126355,0.000053800697,0.0031617947],"genre_scores_gemma":[0.000094332114,0.96596354,0.0000056533177,0.032579497,0.00020607038,0.00026450193,0.00002317786,0.00010247182,0.00076077273],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9727339,0.019752203,0.0049796836,0.0009544529,0.0009944872,0.00058522914],"domain_scores_gemma":[0.9897361,0.004576879,0.0029834937,0.0016479451,0.00044399343,0.0006116318],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.017716972,0.0010080804,0.012734919,0.00089901214,0.00040690045,0.00026037724,0.00081222446,0.0003998486,0.00030508675],"category_scores_gemma":[0.008110217,0.00046955634,0.006950014,0.0028824268,0.00031678606,0.0001203683,0.00018058332,0.004382149,0.000103294704],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020900505,0.0011519014,0.001671947,0.6162297,0.36021549,0.0073866807,0.00011620195,9.360976e-7,4.5023623e-7,0.000015732634,0.006994955,0.006195111],"study_design_scores_gemma":[0.00057503453,0.00047505923,0.00043999063,0.082870506,0.6167277,0.0004292609,0.000018920397,3.9142398e-7,2.2567578e-8,0.0000012648973,0.29811302,0.00034884375],"about_ca_topic_score_codex":0.000002700103,"about_ca_topic_score_gemma":0.0000244127,"teacher_disagreement_score":0.53335917,"about_ca_system_score_codex":0.00017353939,"about_ca_system_score_gemma":0.0013480952,"threshold_uncertainty_score":0.9997756},"labels":[],"label_agreement":null},{"id":"W4415953104","doi":"10.3389/fphar.2025.1682167","title":"Association between point mutations of macrolide-resistant Mycoplasma pneumoniae and clinical antibiotic treatment efficacy: a meta-analysis","year":2025,"lang":"en","type":"review","venue":"Frontiers in Pharmacology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"University of South China; National Natural Science Foundation of China","keywords":"Mycoplasma pneumoniae; Antibiotics; Point mutation; Mycoplasma; Gene; Mutation; Antibiotic resistance","score_opus":0.07867047587099883,"score_gpt":0.4314746789139857,"score_spread":0.3528042030429869,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415953104","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0016502463,0.9928891,0.00017322556,0.00084492343,0.00121739,0.0021269622,0.0007383173,0.000048489008,0.0003113387],"genre_scores_gemma":[0.0020908674,0.9953116,0.00033856175,0.00013961615,0.00014498984,0.00013627419,0.0002641585,0.000031115636,0.0015427964],"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9955648,0.0013459078,0.0018343574,0.0006599897,0.00021243333,0.00038251668],"domain_scores_gemma":[0.99647623,0.0018421597,0.00104859,0.0003208695,0.00012160597,0.00019053502],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008303334,0.0004765818,0.0071955575,0.0017723745,0.000095211646,0.000013675287,0.00013466817,0.0007193042,0.00009412123],"category_scores_gemma":[0.00026137926,0.00035750368,0.0033138155,0.0015866973,0.00017819884,0.0000383516,0.00006629909,0.0006125186,0.000007911421],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055570803,0.001367298,0.07549084,0.005310002,0.7766191,0.00015850812,0.00008615163,0.000021229056,0.000018638924,0.000006487578,0.0041279914,0.1367382],"study_design_scores_gemma":[0.0013582172,0.00042586488,0.0020467427,0.0002048067,0.7095234,0.000012031768,0.000012893367,0.000025482304,0.000008226772,0.000011363924,0.2861813,0.00018967081],"about_ca_topic_score_codex":0.00003532658,"about_ca_topic_score_gemma":0.00004007932,"teacher_disagreement_score":0.28205332,"about_ca_system_score_codex":0.0008067468,"about_ca_system_score_gemma":0.0007728527,"threshold_uncertainty_score":0.9998877},"labels":[],"label_agreement":null},{"id":"W4416106154","doi":"10.1093/cid/ciaf604","title":"A Phase 3, Randomized Trial Investigating the Safety, Tolerability, and Immunogenicity of V116, an Adult-Specific Pneumococcal Conjugate Vaccine, in Pneumococcal Vaccine-Naïve Adults 18–64 Years of Age at Increased Risk of Pneumococcal Disease, STRIDE-8","year":2025,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Immunogenicity; Pneumococcal conjugate vaccine; Randomized controlled trial; Streptococcus pneumoniae; Immune system; Pneumococcal infections; Young adult; Streptococcaceae","score_opus":0.0228320203791658,"score_gpt":0.34784099719829614,"score_spread":0.3250089768191303,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416106154","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9926213,0.0007410719,0.00003698568,0.0002788748,0.0005437148,0.00481938,0.0006935783,0.00011904378,0.00014606521],"genre_scores_gemma":[0.99745166,0.001554814,0.000009351373,0.00020343487,0.00024218176,0.0003223058,0.00015079796,0.00004923949,0.000016184867],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9901858,0.0034498547,0.0043506376,0.000982885,0.00050009636,0.000530701],"domain_scores_gemma":[0.98737323,0.008322853,0.0015919823,0.0012943969,0.0006254366,0.0007921014],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0026142164,0.000565047,0.0031764167,0.00046584793,0.00026302508,0.00003787252,0.0003744101,0.00038408194,0.000096998025],"category_scores_gemma":[0.016046397,0.00043603504,0.0014099936,0.0010638923,0.0015575278,0.00020396123,0.00041647186,0.00097589963,0.0000036533436],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.29654104,0.009495046,0.6748439,0.0005115514,0.0006829235,0.000046477035,0.00015138532,0.000089176174,0.014296972,0.00020938869,0.000030925537,0.0031012294],"study_design_scores_gemma":[0.37705907,0.002156341,0.6161632,0.0005887854,0.00131884,0.0000057345387,0.000079527665,0.0008839869,0.00044469684,0.0009937899,0.000061127015,0.0002448971],"about_ca_topic_score_codex":0.0006813428,"about_ca_topic_score_gemma":0.00056720956,"teacher_disagreement_score":0.08051804,"about_ca_system_score_codex":0.00015925916,"about_ca_system_score_gemma":0.0008231952,"threshold_uncertainty_score":0.99980915},"labels":[],"label_agreement":null},{"id":"W4416372486","doi":"10.2139/ssrn.5762538","title":"Association Between Village Coverage of 13-Valent Pneumococcal Conjugate Vaccine and Vaccine-Type Pneumococcal Carriage Among Children Aged 0 – 59 Months With Pneumonia in Papua New Guinea: An Observational Study","year":2025,"lang":"","type":"preprint","venue":"SSRN Electronic Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Carriage; Pneumonia; Pneumococcal conjugate vaccine; Observational study; Meningitis; Pneumococcal pneumonia; Streptococcus pneumoniae; Pneumococcal disease; Conjugate vaccine","score_opus":0.02439754646803305,"score_gpt":0.29842352272350264,"score_spread":0.2740259762554696,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416372486","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98930985,0.0016993954,0.0002751489,0.0014889898,0.0009814701,0.005670595,0.00028002553,0.000110139095,0.00018436703],"genre_scores_gemma":[0.9851876,0.009937528,0.000017544158,0.0001280084,0.0020258087,0.000110486704,0.00046732687,0.00017955029,0.0019461635],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9851729,0.0022011357,0.004074367,0.0020728814,0.0020107278,0.0044679716],"domain_scores_gemma":[0.99199826,0.00075174955,0.0035648115,0.0013379087,0.0012386094,0.0011086578],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["metaepi_narrow","research_integrity"],"category_scores_codex":[0.006768659,0.0018736616,0.003736557,0.0015892688,0.00091521424,0.00031300285,0.0010663178,0.0014674822,0.000119158096],"category_scores_gemma":[0.00086891116,0.0016891761,0.0006104402,0.0018084475,0.0001198129,0.00090195483,0.00066523976,0.013111127,0.0000095590985],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":true,"study_design_scores_codex":[0.0014159902,0.0020462568,0.9709477,0.00021180778,0.007330752,0.00010515751,0.0013053806,0.0036673408,0.010609981,0.00013937346,0.00003400918,0.0021862418],"study_design_scores_gemma":[0.018521804,0.009580595,0.96033806,0.0012122262,0.0047750263,0.00030443276,0.0013321441,0.00024104763,0.00019411092,0.002067418,0.00011534108,0.0013177996],"about_ca_topic_score_codex":0.0038045968,"about_ca_topic_score_gemma":0.04164971,"teacher_disagreement_score":0.037845116,"about_ca_system_score_codex":0.006068039,"about_ca_system_score_gemma":0.015088558,"threshold_uncertainty_score":0.9998288},"labels":[],"label_agreement":null},{"id":"W4416632815","doi":"10.1056/evidra2500170","title":"Community-Acquired Pneumonia in Adults","year":2025,"lang":"en","type":"article","venue":"NEJM Evidence","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Queen's University","funders":"","keywords":"Pneumonia; Emergency department; Adverse effect; Public health; MEDLINE; Respiratory disease","score_opus":0.03700993221428068,"score_gpt":0.3477020447331585,"score_spread":0.31069211251887785,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416632815","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9827033,0.0005227621,0.000051779356,0.008387164,0.00026342794,0.00026936203,0.0000011510765,0.00009375915,0.007707268],"genre_scores_gemma":[0.9949748,0.00018622015,0.000030689906,0.0033582146,0.00003489147,0.000043524877,0.0000014844944,0.000006783036,0.001363384],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991653,0.00016569177,0.00022402393,0.00014106362,0.00011836504,0.00018554268],"domain_scores_gemma":[0.9991506,0.00023395153,0.000033477467,0.00044515592,0.00007099226,0.00006587478],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027966773,0.000099131066,0.00019644486,0.00020303471,0.00015246826,0.000014563196,0.00013592669,0.00008569476,0.000040668],"category_scores_gemma":[0.0006040214,0.00008770587,0.00005816931,0.000588079,0.00008851513,0.00013478755,0.00007141413,0.00034032532,0.00009358113],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022984453,0.0004587387,0.752099,0.0006803959,0.000036066824,0.00011459501,0.0013111787,0.00002311427,0.22553188,0.0006642989,0.0024368004,0.01641412],"study_design_scores_gemma":[0.0008122701,0.00022842141,0.9745745,0.0048299036,0.000031459353,0.000033113116,0.00031043368,0.0001785913,0.0021153488,0.00021951913,0.016560065,0.00010637967],"about_ca_topic_score_codex":0.00033441634,"about_ca_topic_score_gemma":0.00036370452,"teacher_disagreement_score":0.22341652,"about_ca_system_score_codex":0.00009837924,"about_ca_system_score_gemma":0.0001612861,"threshold_uncertainty_score":0.35765415},"labels":[],"label_agreement":null},{"id":"W4416634552","doi":"10.1183/13993003.congress-2025.pa1706","title":"Late Breaking Abstract - Real-world effectiveness of 20-valent pneumococcal conjugate vaccine among older adults in the United States","year":2025,"lang":"","type":"article","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Merck Canada Inc. (Canada)","funders":"","keywords":"Pneumococcal conjugate vaccine; Pneumococcal pneumonia; Pneumonia; Pneumococcal polysaccharide vaccine; Pneumococcal vaccine; Hazard ratio; Streptococcus pneumoniae; Pneumococcal infections; Respiratory tract infections","score_opus":0.009677558941597738,"score_gpt":0.2943891153635251,"score_spread":0.28471155642192736,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416634552","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.981036,0.0001877964,0.000056182183,0.0013948758,0.0008517145,0.002807746,0.000053430125,0.000090781396,0.013521442],"genre_scores_gemma":[0.99684846,0.0009387209,0.000002314495,0.00066083384,0.00010461861,0.00016791778,0.00012082129,0.000044679517,0.001111637],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.995343,0.0011026302,0.0015394418,0.0007331055,0.00046354448,0.0008182261],"domain_scores_gemma":[0.99526054,0.0027891316,0.000442202,0.00086942187,0.0004486274,0.00019010382],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0023024313,0.000621486,0.0011303582,0.0013085615,0.0003028859,0.000070860995,0.00039366155,0.00030833433,0.0003591797],"category_scores_gemma":[0.00018529959,0.00041653792,0.00034565083,0.0034101882,0.00030133172,0.00021056742,0.00014689028,0.0012073461,0.000030398063],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013230463,0.002548593,0.95034486,0.0047656912,0.00074429315,0.00028755656,0.0020340015,0.0050419746,0.030272938,0.00091319304,0.00019089169,0.0015329691],"study_design_scores_gemma":[0.007032566,0.0004146911,0.9661802,0.01086511,0.00053415855,0.000011317892,0.0012765494,0.0033920964,0.008599129,0.0001317708,0.001203043,0.00035934872],"about_ca_topic_score_codex":0.011523593,"about_ca_topic_score_gemma":0.007014242,"teacher_disagreement_score":0.02167381,"about_ca_system_score_codex":0.00027057773,"about_ca_system_score_gemma":0.00030773558,"threshold_uncertainty_score":0.99982864},"labels":[],"label_agreement":null},{"id":"W4416636891","doi":"10.1183/13993003.congress-2025.pa601","title":"The sociodemographic and environmental risk factors of childhood pneumonia in south asia: a systematic review and meta-analysis","year":2025,"lang":"","type":"article","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University","funders":"","keywords":"Pneumonia; Incidence (geometry); Public health; Child mortality; Risk factor; Global health; Systematic review; Mortality rate","score_opus":0.012084821819012288,"score_gpt":0.2507133892686883,"score_spread":0.238628567449676,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416636891","genre_codex":"review","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.43986574,0.55348736,0.000058791913,0.002200533,0.000052466126,0.003735999,0.00025157767,0.000020219511,0.00032730197],"genre_scores_gemma":[0.9303338,0.06842641,0.000003110228,0.0004498444,0.000004249802,0.00013595713,0.000005446754,0.000012950512,0.0006282113],"study_design_codex":"observational","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9962144,0.0010622884,0.0015363473,0.0005209262,0.0003238963,0.0003421451],"domain_scores_gemma":[0.9976771,0.00073168677,0.00067177485,0.0007332756,0.00002686122,0.0001593108],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014222017,0.0004513931,0.0036918859,0.0006167087,0.00048658153,0.00004669832,0.00015164612,0.00019683396,0.00015898127],"category_scores_gemma":[0.0003232152,0.00023141417,0.0015185421,0.0014670548,0.00061110035,0.000073576724,0.00013658935,0.00055128237,0.000003043483],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000005050545,0.0005112353,0.50830495,0.0824106,0.40576038,0.0000056497697,0.0025289769,0.000009196857,0.000182412,0.00024945472,0.000012266039,0.000019827834],"study_design_scores_gemma":[0.00035311095,0.00010583204,0.22750464,0.0013156645,0.7653568,0.0000057682046,0.0050343364,0.00008297655,0.000018069106,0.000051768413,0.000013464076,0.0001576121],"about_ca_topic_score_codex":0.000075455544,"about_ca_topic_score_gemma":0.00018237635,"teacher_disagreement_score":0.49046806,"about_ca_system_score_codex":0.000046383808,"about_ca_system_score_gemma":0.000070152564,"threshold_uncertainty_score":0.94367963},"labels":[],"label_agreement":null},{"id":"W4416999469","doi":"10.7189/jogh.15.04326","title":"Hospitalisation and critical care for pneumonia among children aged 5–9 years in Bangladesh: a 10-year retrospective analysis","year":2025,"lang":"en","type":"article","venue":"Journal of Global Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Pneumonia; Retrospective cohort study; MEDLINE; Critical illness; Severity of illness; Health care","score_opus":0.0072034747946256705,"score_gpt":0.3444556745496873,"score_spread":0.3372521997550616,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416999469","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957383,0.0005415713,0.0003182633,0.0027114851,0.00013978701,0.00028104513,0.00005462856,0.000009171871,0.00020573287],"genre_scores_gemma":[0.9991807,0.000060738046,0.00019583218,0.00043588315,0.000094837116,0.000004218113,0.0000073674014,0.0000042848865,0.000016169668],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990466,0.00007219168,0.00039200735,0.00013589564,0.0001694981,0.00018378925],"domain_scores_gemma":[0.9993373,0.000044340384,0.00014498878,0.00009257002,0.0002211103,0.00015970138],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031136957,0.00008231563,0.00041758892,0.00026084922,0.0000911484,0.000022222608,0.000041707193,0.000082894,0.0000088120105],"category_scores_gemma":[0.00026933066,0.00007251006,0.000165931,0.00076300924,0.00007062702,0.00008707963,0.000013260625,0.00019431672,5.58839e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008635864,0.000079450096,0.99741507,0.00006240404,0.00016683567,0.000011928341,0.0002204297,0.000012003752,0.00002398441,0.000650102,0.00030632436,0.00096512074],"study_design_scores_gemma":[0.0012628254,0.0008799703,0.99637306,0.00014111912,0.0003407572,0.000027959182,0.0004370595,0.000028552311,0.0000045958013,0.00035405994,0.00010167118,0.000048360373],"about_ca_topic_score_codex":0.00015588949,"about_ca_topic_score_gemma":0.0007043333,"teacher_disagreement_score":0.0034423547,"about_ca_system_score_codex":0.0010299336,"about_ca_system_score_gemma":0.00046856134,"threshold_uncertainty_score":0.29568744},"labels":[],"label_agreement":null},{"id":"W4417076129","doi":"10.1016/j.vaccine.2025.128066","title":"Effect of pneumococcal conjugate vaccine booster dose on prevention of invasive pneumococcal disease in British Columbia, 2003–2018","year":2025,"lang":"en","type":"article","venue":"Vaccine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"Canadian Immunization Research Network","keywords":"Booster (rocketry); Pneumococcal conjugate vaccine; Booster dose; Pneumococcal disease; Incidence (geometry); Schedule; Pneumococcal infections; Streptococcus pneumoniae; Conjugate vaccine","score_opus":0.007175153799970881,"score_gpt":0.27351531555026654,"score_spread":0.2663401617502957,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417076129","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99641114,0.0002392043,0.000009871325,0.00046690254,0.00040676157,0.0017511073,0.000056271358,0.000048313384,0.00061042747],"genre_scores_gemma":[0.99637526,0.0001377788,0.0000055854343,0.00027065413,0.00008358602,0.00014387621,0.00005641367,0.000026831778,0.0029000046],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998002,0.00027502803,0.0007757195,0.0004137842,0.00022185758,0.00031162656],"domain_scores_gemma":[0.9986154,0.00025864632,0.00021805422,0.00047768277,0.00023178017,0.00019845128],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003967527,0.00020259406,0.0008066999,0.00031426543,0.000066881024,0.000026500673,0.0001235626,0.00016151248,0.00028657567],"category_scores_gemma":[0.0007862753,0.00023853773,0.00021332149,0.0009711878,0.000029604178,0.00010439586,0.00008375646,0.00031548427,0.000022519234],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010744483,0.0010685324,0.8112855,0.0012649444,0.00013785188,0.00015676272,0.000026862954,0.000035200766,0.17860122,0.000012171977,0.0014212864,0.004915222],"study_design_scores_gemma":[0.009454782,0.0036493735,0.9664594,0.0024107853,0.0003562253,0.000025944933,0.000013874864,0.000076362936,0.016068492,0.000099124474,0.0012162472,0.00016936779],"about_ca_topic_score_codex":0.0013369684,"about_ca_topic_score_gemma":0.008057998,"teacher_disagreement_score":0.16253273,"about_ca_system_score_codex":0.00010965617,"about_ca_system_score_gemma":0.00032538903,"threshold_uncertainty_score":0.97272867},"labels":[],"label_agreement":null},{"id":"W4417105720","doi":"10.21203/rs.3.rs-7844666/v1","title":"Macrolide Therapy in Critically Ill Patients with Community-Acquired Pneumonia: Protocol for a Systematic Review and Meta-Analysis","year":2025,"lang":"","type":"preprint","venue":"Research Square","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University of Toronto; University of Alberta","funders":"","keywords":"Observational study; Randomized controlled trial; Pneumonia; Cohort study; MEDLINE; Critically ill; Cochrane Library; Meta-analysis; Systematic review","score_opus":0.14870435263295315,"score_gpt":0.4768169890781349,"score_spread":0.32811263644518174,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417105720","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0015380618,0.0056582075,0.00038219447,0.0092587955,0.000027557247,0.9806225,0.0016098313,0.000084968226,0.0008179402],"genre_scores_gemma":[0.028351622,0.0012378645,0.00011685819,0.005088609,0.000031016225,0.9635896,0.00020954352,0.00008456568,0.0012902947],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9797606,0.012841507,0.00255806,0.00128083,0.0020732512,0.001485747],"domain_scores_gemma":[0.9754374,0.0047752834,0.00053357787,0.003316647,0.015278813,0.0006582755],"candidate_categories":["metaresearch","metaepi_narrow","sts","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.010574262,0.0010500437,0.008130305,0.0025190364,0.0013348219,0.0003164469,0.0009783453,0.00066449185,0.0003980912],"category_scores_gemma":[0.008505268,0.0006588052,0.0021367597,0.004017658,0.00083438493,0.0001737569,0.0009578258,0.0035274026,0.000016745698],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00051633327,0.0032238194,0.007029244,0.8797123,0.10854421,0.000031263502,0.00065736216,0.000026901036,0.00003394773,0.00009820232,0.00007882737,0.000047615285],"study_design_scores_gemma":[0.012574439,0.010836033,0.021668822,0.28932628,0.6581224,0.00001928858,0.0017512391,0.00047067498,0.00005796878,0.0005404314,0.0029641876,0.0016682016],"about_ca_topic_score_codex":0.0005612562,"about_ca_topic_score_gemma":0.0006982419,"teacher_disagreement_score":0.59038603,"about_ca_system_score_codex":0.00060528266,"about_ca_system_score_gemma":0.0014284853,"threshold_uncertainty_score":0.9999653},"labels":[],"label_agreement":null},{"id":"W4417213745","doi":"10.33540/3261","title":"The changing landscape of Community-Acquired Pneumonia","year":2025,"lang":"","type":"dissertation","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Procalcitonin; Streptococcus pneumoniae; Pneumonia; Disease; Pneumococcal pneumonia; Vaccination; Serotype; Biomarker","score_opus":0.020843319673776443,"score_gpt":0.30476981604641407,"score_spread":0.2839264963726376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417213745","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8346186,0.002181311,0.00010440567,0.0018482183,0.0047349846,0.0011610173,0.00004384605,0.0001166103,0.15519099],"genre_scores_gemma":[0.91272986,0.0016941173,0.000003967893,0.0005709219,0.0002115423,0.00010676996,0.00034306775,0.000040021227,0.08429975],"study_design_codex":"bench_or_experimental","study_design_gemma":"qualitative","domain_scores_codex":[0.9970246,0.0006428182,0.0010485327,0.00022360127,0.00043176248,0.0006286899],"domain_scores_gemma":[0.9961571,0.0013353435,0.00054862036,0.0012061219,0.0006004164,0.00015238611],"candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.001104099,0.0004891578,0.00085204764,0.00075320696,0.00307025,0.00006959468,0.0005227492,0.0005480627,0.0003314267],"category_scores_gemma":[0.00048274876,0.00032307845,0.0004930951,0.0013983173,0.00018491583,0.00006969849,0.0001361568,0.0010974766,0.000061942665],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012511906,0.0034298713,0.027314521,0.011924057,0.0068301945,0.00004895803,0.07999975,0.00017038018,0.6699278,0.015836608,0.00583482,0.17743188],"study_design_scores_gemma":[0.0059704636,0.003097329,0.18552233,0.009568132,0.0059454893,0.00008957007,0.52414256,0.0028024756,0.057495274,0.00067028834,0.20281489,0.0018811724],"about_ca_topic_score_codex":0.00019351898,"about_ca_topic_score_gemma":0.0008179957,"teacher_disagreement_score":0.6124325,"about_ca_system_score_codex":0.000068630594,"about_ca_system_score_gemma":0.000738724,"threshold_uncertainty_score":0.99992216},"labels":[],"label_agreement":null},{"id":"W4417215619","doi":"10.64898/2025.12.10.693482","title":"Mechanism of NanR transcriptional activation of sialic acid metabolism in <i>Streptococcus pneumoniae</i>","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Lethbridge","funders":"","keywords":"Sialic acid; DNA; Regulator; Transcriptional regulation; Effector; Gene; Transcription factor; Transcription (linguistics); Operon","score_opus":0.0150771941431261,"score_gpt":0.24120832750500093,"score_spread":0.22613113336187482,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417215619","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99412274,0.0004963049,0.0013840644,0.000564178,0.0011537443,0.001497937,0.0005264359,0.00015751178,0.000097108445],"genre_scores_gemma":[0.9985318,0.00022349013,0.00037834435,0.00025772894,0.00019804777,0.000342407,0.000001263991,0.000055008688,0.00001186321],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971076,0.00017028837,0.0010934223,0.000715089,0.00052950234,0.0003840847],"domain_scores_gemma":[0.99751633,0.000063131585,0.00061626633,0.0009566442,0.0006750869,0.00017250741],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000479652,0.00049448747,0.0011629554,0.00096380303,0.000069379916,0.000021344395,0.00029561066,0.00075769774,0.000054719105],"category_scores_gemma":[0.00019696017,0.00050986296,0.00039375474,0.000983655,0.00015227983,0.00013310889,0.00014859422,0.0009383701,0.0000056960653],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052767602,0.00053605094,0.0064693894,0.0012564051,0.0002551355,0.00001304431,0.000027404876,0.00006770785,0.9834061,0.007890485,0.000022422606,0.00000303196],"study_design_scores_gemma":[0.0012382771,0.00008233049,0.13810448,0.0013742666,0.0003217856,2.9912783e-8,0.0000053751796,0.00008655369,0.8560385,0.000020733021,0.0023954909,0.00033217834],"about_ca_topic_score_codex":0.000070143804,"about_ca_topic_score_gemma":0.0000045412166,"teacher_disagreement_score":0.1316351,"about_ca_system_score_codex":0.00022313665,"about_ca_system_score_gemma":0.0015244811,"threshold_uncertainty_score":0.9997353},"labels":[],"label_agreement":null},{"id":"W4417283201","doi":"10.14745/ccdr.v51i101112a01f","title":"Résumé de la déclaration du Comité consultatif national de l’immunisation (CCNI) : recommandations sur l’utilisation des vaccins contre le pneumocoque chez les adultes, y compris le Pneu-C-21","year":2025,"lang":"","type":"article","venue":"Relevé des maladies transmissibles au Canada","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Polyvalent Vaccine; Context (archaeology); Travel medicine","score_opus":0.01277023775803147,"score_gpt":0.2448869856013001,"score_spread":0.23211674784326863,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417283201","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93272704,0.0057912446,0.018860204,0.012756818,0.00060899154,0.001542781,0.00055828807,0.00023353354,0.026921118],"genre_scores_gemma":[0.9787658,0.016292041,0.0006242317,0.00084151,0.00025166795,0.00024511918,0.0004780814,0.0000863633,0.002415178],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99456686,0.0016280756,0.0014161484,0.0007207362,0.0006193197,0.0010488849],"domain_scores_gemma":[0.9944706,0.0025919022,0.0004528163,0.00047114847,0.001494376,0.00051914],"candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.001439171,0.00074529264,0.00089592667,0.00061520515,0.0040531475,0.0003004216,0.00039093258,0.00065895636,0.00027524235],"category_scores_gemma":[0.0015157976,0.0008272911,0.00031823863,0.0012161657,0.001277696,0.00061094825,0.000054031592,0.0010468002,0.000005409197],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":true,"study_design_scores_codex":[0.00093677285,0.0024986723,0.67224973,0.010310916,0.0031212186,0.00017251557,0.012618224,0.02865878,0.15047084,0.037324917,0.019046344,0.06259109],"study_design_scores_gemma":[0.006954096,0.0002722766,0.8092378,0.0057666143,0.0008749441,0.00027476935,0.0063290508,0.030889729,0.012654718,0.0027147972,0.12306717,0.00096407597],"about_ca_topic_score_codex":0.5905721,"about_ca_topic_score_gemma":0.87779707,"teacher_disagreement_score":0.287225,"about_ca_system_score_codex":0.0041369707,"about_ca_system_score_gemma":0.034991086,"threshold_uncertainty_score":0.99968594},"labels":[],"label_agreement":null},{"id":"W4417283226","doi":"10.14745/ccdr.v51i101112a01","title":"Summary of the National Advisory Committee on Immunization (NACI) Statement: Recommendations on the use of pneumococcal vaccines in adults, including Pneu-C-21","year":2025,"lang":"","type":"article","venue":"Canada Communicable Disease Report","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Advisory committee; Immunization; Vaccination; Pneumococcal disease; Pneumococcal vaccine; Routine immunization","score_opus":0.06102300673187921,"score_gpt":0.31247120309546805,"score_spread":0.25144819636358884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417283226","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9081695,0.0010598201,0.000015554935,0.0766119,0.0014812443,0.0026187305,0.0009658015,0.00003152276,0.009045903],"genre_scores_gemma":[0.99268675,0.0014700998,0.000009170687,0.0037441757,0.000038806407,0.00016318118,0.00034559245,0.000034625788,0.00150757],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9947206,0.0014151616,0.002118011,0.00038700315,0.00095833815,0.0004008957],"domain_scores_gemma":[0.9929233,0.0023031048,0.0011797441,0.0023877507,0.0010055471,0.00020053296],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0011836834,0.00038972872,0.00064792996,0.0004268163,0.0010520878,0.000037189755,0.0008180403,0.00013250827,0.00015563621],"category_scores_gemma":[0.0040486804,0.00028362233,0.0002648463,0.0016838149,0.0003052803,0.00019896188,0.0006760888,0.0010572072,9.371345e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017242527,0.006361975,0.80450267,0.0020559363,0.0016345846,0.00022309013,0.0006605912,0.030934488,0.0053215562,0.011580651,0.1324084,0.0025918353],"study_design_scores_gemma":[0.0021601545,0.00016867949,0.62757003,0.011674336,0.0004470584,0.0000175584,0.0014108473,0.005518177,0.00080977567,0.00031111436,0.34951207,0.0004002297],"about_ca_topic_score_codex":0.06356194,"about_ca_topic_score_gemma":0.16805984,"teacher_disagreement_score":0.21710366,"about_ca_system_score_codex":0.0014870301,"about_ca_system_score_gemma":0.008900372,"threshold_uncertainty_score":0.9999616},"labels":[],"label_agreement":null},{"id":"W4417296779","doi":"10.1093/pch/pxaf116.061","title":"61 The distribution of MeMed BV assay results in Children hospitalized at McMaster Children’s Hospital with Severe community-acquired pneumonia (DISCOTHEQUE)","year":2025,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Pneumonia; Cohort; Antibiotics; Prospective cohort study; Community-acquired pneumonia; Cohort study","score_opus":0.007501829124443379,"score_gpt":0.2566922188496866,"score_spread":0.24919038972524324,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417296779","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9720195,0.00084975467,0.000114723465,0.022244344,0.00023311096,0.0023700262,0.00076589966,0.000108028624,0.0012946228],"genre_scores_gemma":[0.9956464,0.00066974986,0.000032013675,0.0021237442,0.00018576508,0.0000817474,0.0010149925,0.000038865684,0.00020668395],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9964913,0.00090286054,0.0010142936,0.00043853946,0.00049859664,0.0006544161],"domain_scores_gemma":[0.9978137,0.00031810126,0.0005530044,0.0009144253,0.00016804595,0.00023272778],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0016745972,0.00038501064,0.0007554767,0.00030361515,0.0011340902,0.00004063702,0.00034762968,0.00022517156,0.000016363621],"category_scores_gemma":[0.00040891656,0.00025725516,0.0002083355,0.0014548576,0.00032063763,0.00012239648,0.0002175641,0.00097550673,0.000011841292],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032195987,0.0009308451,0.9936098,0.0001279458,0.0001930626,0.0000026249616,0.0014506232,0.0000645671,0.000042944866,0.00021623903,0.0017934268,0.0012459555],"study_design_scores_gemma":[0.006115844,0.0010120906,0.99053776,0.00029452084,0.00016713004,0.00008382406,0.00017468384,0.00003139196,0.0000772186,0.000061805935,0.0011937958,0.000249937],"about_ca_topic_score_codex":0.001827188,"about_ca_topic_score_gemma":0.0006171107,"teacher_disagreement_score":0.023626948,"about_ca_system_score_codex":0.0006448068,"about_ca_system_score_gemma":0.00065371615,"threshold_uncertainty_score":0.99998796},"labels":[],"label_agreement":null},{"id":"W4417311703","doi":"10.1503/cmaj.251139","title":"Invasive pneumococcal disease caused by vaccine serotype 9V in previously immunized adults","year":2025,"lang":"en","type":"article","venue":"Canadian Medical Association Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Pneumococcal disease; Serotype; Confusion; Pneumococcal vaccine; Pneumococcal infections; Disease; Antibody","score_opus":0.0039291221183088915,"score_gpt":0.2412840249631654,"score_spread":0.2373549028448565,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417311703","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91119754,0.00051402964,0.00001539823,0.08544349,0.0007020877,0.000396885,0.000026581602,0.000028440858,0.0016755315],"genre_scores_gemma":[0.9777386,0.0005058429,0.0000041718035,0.019552883,0.00037269766,0.000033857537,0.000037374986,0.000016088994,0.0017384418],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978544,0.00025144394,0.0005605378,0.00018849841,0.00062126695,0.0005238585],"domain_scores_gemma":[0.99703246,0.00021249763,0.00015403288,0.00015913403,0.0003546224,0.0020872676],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0008229016,0.00015341482,0.00034939757,0.0004249558,0.0002441708,0.00004860228,0.00015664444,0.0003460683,0.0013437863],"category_scores_gemma":[0.0046479176,0.00013623778,0.0001312538,0.00059587765,0.000025361447,0.00009999123,0.00001920772,0.0012819283,0.000089614645],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000094817726,0.00017194776,0.90994954,0.000062493746,0.00019190523,0.001126931,0.00022705962,0.000003819581,0.0009924136,0.00005360505,0.08181914,0.0053063226],"study_design_scores_gemma":[0.005655415,0.00010893656,0.79284215,0.00083597377,0.0001026477,0.000078635174,0.0002009167,0.00012280322,0.000046782912,0.00008548737,0.19976234,0.00015788968],"about_ca_topic_score_codex":0.0016884404,"about_ca_topic_score_gemma":0.05035063,"teacher_disagreement_score":0.117943205,"about_ca_system_score_codex":0.0017423533,"about_ca_system_score_gemma":0.008437937,"threshold_uncertainty_score":0.9995691},"labels":[],"label_agreement":null},{"id":"W4417343575","doi":"10.1016/s1473-3099(25)00689-9","title":"Global burden of lower respiratory infections and aetiologies, 1990–2023: a systematic analysis for the Global Burden of Disease Study 2023","year":2025,"lang":"en","type":"article","venue":"The Lancet Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; McGill University; University of Regina; University of Calgary; Artificial Intelligence in Medicine (Canada); University of British Columbia; University Health Network; Ottawa Hospital; University of Manitoba; University of Alberta; Queen's University; McMaster University; Health Sciences North; University of Toronto; Impact","funders":"Bill and Melinda Gates Foundation","keywords":"Burden of disease; Disease burden; Disease; Respiratory system; Double burden; Global health","score_opus":0.024695533040596126,"score_gpt":0.328709209842941,"score_spread":0.30401367680234487,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417343575","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98682594,0.0048088375,0.00083873054,0.0011244515,0.00052410853,0.003322668,0.0011714008,0.00016593719,0.0012179164],"genre_scores_gemma":[0.99829614,0.00017158431,0.0000014534729,0.0003694215,0.00029449398,0.000716333,0.0000138748155,0.000009205253,0.00012752115],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99813396,0.00036724395,0.00060015253,0.00032900693,0.00027418922,0.00029544995],"domain_scores_gemma":[0.99729216,0.00095557416,0.0003105899,0.0009819991,0.00031783918,0.0001418187],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004661444,0.00025457796,0.000998003,0.00019020955,0.00041612537,0.000043675576,0.00024023224,0.0000778099,0.000029564266],"category_scores_gemma":[0.0016488007,0.00014486317,0.0004949955,0.0020286764,0.00041756182,0.00006177194,0.00015751485,0.000122011,0.000004224097],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003206193,0.000802211,0.9810921,0.0034260734,0.0052361083,0.0000081561275,0.00009359982,0.006423792,0.000043576638,0.0012372544,0.0011840163,0.00013252623],"study_design_scores_gemma":[0.0023151522,0.0011060176,0.9698395,0.00077694055,0.020618219,0.0000064717074,0.0011922544,0.00084353687,0.0000023121333,0.0015982757,0.0015199982,0.00018131235],"about_ca_topic_score_codex":0.0009955519,"about_ca_topic_score_gemma":0.0006601833,"teacher_disagreement_score":0.015382111,"about_ca_system_score_codex":0.00017770453,"about_ca_system_score_gemma":0.00033816491,"threshold_uncertainty_score":0.59073484},"labels":[],"label_agreement":null},{"id":"W4417480252","doi":"10.1016/j.jval.2025.09.599","title":"EE215 Cost-Effectiveness Analysis of Pediatric and Adult Pneumococcal Conjugate Vaccine Strategies in Canada","year":2025,"lang":"en","type":"article","venue":"Value in Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Pfizer (Canada)","funders":"","keywords":"Pneumococcal conjugate vaccine; Pneumococcal disease; Pneumococcal vaccine; Pneumococcal infections; MEDLINE","score_opus":0.02268381399550877,"score_gpt":0.3228783492182144,"score_spread":0.3001945352227056,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417480252","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970388,0.0005558273,0.000042641095,0.0013574216,0.00012318206,0.00063351874,0.000023778039,0.0000105343115,0.00021430374],"genre_scores_gemma":[0.99883443,0.0006845668,0.000007557899,0.0003795962,0.00002060322,0.000047229205,0.000009911978,0.000005493057,0.000010610502],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986604,0.00027776137,0.00048382735,0.00021758082,0.00012274495,0.00023767877],"domain_scores_gemma":[0.99920094,0.0003438521,0.00010090675,0.00016514503,0.000083433406,0.00010574886],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041215675,0.00011049179,0.0005858491,0.00084972015,0.00004080047,0.0000059820654,0.00004076201,0.00005428195,0.0000078850935],"category_scores_gemma":[0.00011466777,0.00009784816,0.000044326745,0.0021621324,0.00001557552,0.000043160282,0.000020295538,0.00022431476,3.0965066e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005881584,0.00008729025,0.98145974,0.0007629017,0.00010642272,0.00002248562,0.00008860085,0.015498402,0.00053670275,0.0008262654,0.000015914573,0.00053645094],"study_design_scores_gemma":[0.0012541256,0.00012705362,0.9905778,0.00013219111,0.0001863675,0.0000030908625,0.0003422236,0.007009396,0.00006591721,0.000086330925,0.00015069498,0.00006477657],"about_ca_topic_score_codex":0.89122045,"about_ca_topic_score_gemma":0.8509718,"teacher_disagreement_score":0.040248632,"about_ca_system_score_codex":0.0007404244,"about_ca_system_score_gemma":0.0041420213,"threshold_uncertainty_score":0.7347768},"labels":[],"label_agreement":null},{"id":"W4417480599","doi":"10.1016/j.jval.2025.09.871","title":"EE488 Health Economic Analysis of Risk- and Age-Based Pneumococcal Vaccination With PCV21 vs. PCV20 in France","year":2025,"lang":"en","type":"article","venue":"Value in Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Merck Canada Inc. (Canada)","funders":"","keywords":"Pneumococcal vaccination; Vaccination; Pneumococcal disease; Pneumococcal conjugate vaccine; Serotype; Pneumococcal infections","score_opus":0.013692807849383853,"score_gpt":0.3065944956887193,"score_spread":0.29290168783933546,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417480599","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923204,0.0005417124,0.0004998153,0.0058817617,0.00008314913,0.00050472835,0.000028242426,0.000023047816,0.000117151576],"genre_scores_gemma":[0.9978797,0.00047177897,0.00015346149,0.0013986769,0.000017429695,0.00002900025,0.000018335673,0.0000087664375,0.000022886508],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99847996,0.00029128717,0.0005954719,0.00028875796,0.00009680037,0.00024771554],"domain_scores_gemma":[0.9991274,0.00022407016,0.00025908204,0.00024251163,0.000028557979,0.00011840336],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008134525,0.00011865098,0.00065604324,0.0012807482,0.00007755568,0.0000069098623,0.000046045534,0.00007163455,0.000015228836],"category_scores_gemma":[0.000068030095,0.000104095954,0.000060371363,0.0012508323,0.000039499417,0.00004344455,0.000011225513,0.00027716332,0.0000015078482],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006205414,0.00017360118,0.9375564,0.00042767506,0.00006921531,0.0000055669575,0.00031756677,0.057215918,0.0000629788,0.00033561094,0.000011945195,0.0037615036],"study_design_scores_gemma":[0.001745115,0.00041172488,0.95509493,0.0003118761,0.00006958299,0.000001612961,0.000052887757,0.041346688,0.000042422424,0.00006620893,0.0007908759,0.0000660454],"about_ca_topic_score_codex":0.011869517,"about_ca_topic_score_gemma":0.00543585,"teacher_disagreement_score":0.017538596,"about_ca_system_score_codex":0.00044319066,"about_ca_system_score_gemma":0.0011094676,"threshold_uncertainty_score":0.9947105},"labels":[],"label_agreement":null},{"id":"W45655751","doi":"10.1155/2006/759694","title":"Reasons for Coming to Hospital after Treatment for Community‐Acquired Pneumonia on an Ambulatory Basis","year":2006,"lang":"en","type":"article","venue":"Canadian Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Pneumonia; Community-acquired pneumonia; Ambulatory; Intensive care medicine; Adverse effect; Confounding; Pediatrics; Emergency medicine; Internal medicine","score_opus":0.0304262307258792,"score_gpt":0.2924140001294775,"score_spread":0.2619877694035983,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W45655751","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99349624,0.00013250097,0.00027419228,0.0028070004,0.0006882847,0.0014311478,0.00039518054,0.000054949796,0.00072051625],"genre_scores_gemma":[0.9871278,0.0000027292103,0.00030842365,0.009969223,0.0013861648,0.00051420083,0.000029022729,0.000092862145,0.00056960253],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980764,0.00019071969,0.00047097958,0.0002906371,0.00020013264,0.00077113515],"domain_scores_gemma":[0.9970109,0.00016405662,0.00013214593,0.0005694777,0.00032864735,0.0017947695],"candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.00051710074,0.0003373245,0.00043505424,0.0007477292,0.0015010501,0.00013851015,0.00016372216,0.0002131065,0.00005910627],"category_scores_gemma":[0.00014209426,0.0003010986,0.0003699148,0.00020545365,0.000089769565,0.00015651446,0.000010851594,0.00031553634,0.000030153888],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0036602065,0.00592815,0.64407325,0.00039024226,0.0016102517,0.002416516,0.0049288557,0.0016294721,0.13520268,0.00300159,0.109670155,0.0874886],"study_design_scores_gemma":[0.0035191493,0.0098837195,0.2868413,0.00019020468,0.0002570609,0.00019433885,0.00047682555,0.00004476785,0.0014806304,0.00016915912,0.6964681,0.00047470548],"about_ca_topic_score_codex":0.0034940375,"about_ca_topic_score_gemma":0.06665343,"teacher_disagreement_score":0.58679795,"about_ca_system_score_codex":0.0018024837,"about_ca_system_score_gemma":0.0015167197,"threshold_uncertainty_score":0.9999441},"labels":[],"label_agreement":null},{"id":"W46117720","doi":"10.1155/2008/659245","title":"HAP/VAP: Simpler May Be Cetter","year":2008,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hamilton Health Sciences","funders":"","keywords":"Intensive care medicine; Pneumonia; Medicine; Infectious disease (medical specialty); Disease; Family medicine; Internal medicine","score_opus":0.011483578525970446,"score_gpt":0.2468715092481965,"score_spread":0.23538793072222605,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W46117720","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98549443,0.0007932353,0.000049857706,0.0121051585,0.0007327573,0.00008774648,0.00004064036,0.000013458059,0.00068270724],"genre_scores_gemma":[0.97946036,0.00033223402,0.000004087076,0.01948076,0.000536686,0.0000025139254,0.000013420132,0.000013055404,0.00015688097],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9990222,0.00006963413,0.00033148812,0.00013149585,0.00007357105,0.00037160236],"domain_scores_gemma":[0.9976618,0.00006562034,0.00007598848,0.0001045173,0.0001432223,0.001948805],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00011124266,0.00013220718,0.0003557356,0.00029199757,0.00026027468,0.000008992094,0.00006670511,0.00018342065,0.0014470269],"category_scores_gemma":[0.00031613818,0.00008662422,0.0001706471,0.00008892862,0.0006516163,0.000044941877,0.000013809497,0.00038697643,0.000020392534],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042117368,0.00017695257,0.90262985,0.000064576445,0.00036158544,0.006465473,0.00030837912,0.0000027667322,0.02479545,0.00011926668,0.060454335,0.0045792656],"study_design_scores_gemma":[0.0020249279,0.00086033926,0.17931668,0.00008450269,0.0001978285,0.07574327,0.000042177966,0.000002293252,0.00024791155,0.00006371362,0.74125046,0.00016586183],"about_ca_topic_score_codex":0.00078208,"about_ca_topic_score_gemma":0.0021259226,"teacher_disagreement_score":0.72331315,"about_ca_system_score_codex":0.0000979077,"about_ca_system_score_gemma":0.0017523126,"threshold_uncertainty_score":0.99946576},"labels":[],"label_agreement":null},{"id":"W48044459","doi":"10.1155/2007/713576","title":"The Burden of Pneumococcal Disease in the Canadian Population Before Routine Use of the Seven‐Valent Pneumococcal Conjugate Vaccine","year":2006,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ministère de la Santé et des Services Sociaux (Québec); Université de Sherbrooke; Université de Montréal; Université Laval","funders":"Université Laval","keywords":"Pneumococcal disease; Pneumococcal conjugate vaccine; Medicine; Pneumococcal infections; Conjugate; Pediatrics; Population; Conjugate vaccine; Streptococcus pneumoniae; Intensive care medicine; Environmental health; Immunology; Microbiology; Immunization; Biology; Antibiotics; Mathematics; Antibody","score_opus":0.00630018285309441,"score_gpt":0.22627284728475452,"score_spread":0.2199726644316601,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W48044459","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98281217,0.0007095915,0.0000025360039,0.015476602,0.00044772786,0.00034864421,0.00015932266,0.0000031558322,0.000040264724],"genre_scores_gemma":[0.9987598,0.000069116104,7.215116e-7,0.0007344857,0.00035863693,0.000007031679,0.000025792433,0.00001111765,0.000033295677],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983954,0.00029557216,0.0006704728,0.00013027214,0.00014066197,0.00036764954],"domain_scores_gemma":[0.99818814,0.00021471248,0.00029834366,0.00022584316,0.00021565276,0.0008573155],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037897806,0.00015353641,0.00035528836,0.00023392565,0.00036281504,0.00002508025,0.00018896638,0.00015721458,0.000044798428],"category_scores_gemma":[0.00083380647,0.00007542756,0.0002208825,0.00026855513,0.0004992748,0.00005065651,0.000020071131,0.000446184,8.089421e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000050136678,0.00007204331,0.9957708,0.00004720945,0.00006663578,0.00015864774,0.00015396885,0.00020428572,0.0015054995,0.00048461737,0.00055501546,0.00093111896],"study_design_scores_gemma":[0.0009962518,0.0002850791,0.97790486,0.00020459815,0.00021193316,0.0009786749,0.000073274976,0.000058707086,0.00001429564,0.00031741877,0.018882448,0.00007248629],"about_ca_topic_score_codex":0.34177732,"about_ca_topic_score_gemma":0.7990733,"teacher_disagreement_score":0.45729595,"about_ca_system_score_codex":0.00023338753,"about_ca_system_score_gemma":0.002737002,"threshold_uncertainty_score":0.6626058},"labels":[],"label_agreement":null},{"id":"W52596733","doi":"10.1007/978-3-642-59681-0_28","title":"Clinical Needs in The Millennium — Pneumonia — The Role of Moxifloxacin","year":2000,"lang":"en","type":"book-chapter","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Juravinski Hospital; Hamilton General Hospital","funders":"","keywords":"Moxifloxacin; Clarithromycin; Amoxicillin; Medicine; Pneumonia; Internal medicine; Penicillin; Community-acquired pneumonia; Antibiotics; Microbiology; Helicobacter pylori; Biology","score_opus":0.023796596436567678,"score_gpt":0.2945982846169371,"score_spread":0.2708016881803694,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W52596733","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.012623546,0.0013493556,0.0000014774225,0.003138698,0.0002115806,0.0006206237,0.000015543872,0.000036096553,0.9820031],"genre_scores_gemma":[0.50208664,0.0069128033,0.0000126026025,0.008682349,0.0011630681,0.000049466555,0.000023360139,0.00009449812,0.48097518],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983365,0.00008922815,0.00078915706,0.00022811379,0.00034544404,0.00021158962],"domain_scores_gemma":[0.9985162,0.00035843035,0.00016191335,0.00082557596,0.000060638136,0.00007726423],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00055076095,0.00027094924,0.0005843765,0.00022231985,0.00008020452,0.0000110134215,0.0002801841,0.0005117557,0.001281511],"category_scores_gemma":[0.000029809598,0.0001247238,0.0004761726,0.00010202494,0.00034239353,0.000022104465,0.00004118418,0.0011822218,0.00028729593],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000867105,0.0027348981,0.09386686,0.0004174007,0.0023898904,0.00057628757,0.0056296154,0.00007642957,0.014550082,0.49942333,0.04755832,0.3319098],"study_design_scores_gemma":[0.00043656144,0.0003524651,0.0100408755,0.00013339648,0.00022296602,0.0001057544,0.0002557107,0.000014773512,0.00004104094,0.0035210527,0.98472995,0.00014548199],"about_ca_topic_score_codex":0.000053576863,"about_ca_topic_score_gemma":0.000096658114,"teacher_disagreement_score":0.9371716,"about_ca_system_score_codex":0.000026354983,"about_ca_system_score_gemma":0.00017409255,"threshold_uncertainty_score":0.99963146},"labels":[],"label_agreement":null},{"id":"W57238133","doi":"10.26443/mjm.v4i1.677","title":"Antimicrobial Resistant Streptococcus pneumoniae Infections: Clinical and Epidemiological Trends","year":2020,"lang":"en","type":"article","venue":"McGill Journal of Medicine","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Streptococcus pneumoniae; Antimicrobial; Epidemiology; Microbiology; Antibiotics; Internal medicine; Biology","score_opus":0.10430667948275851,"score_gpt":0.38107478838862513,"score_spread":0.2767681089058666,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W57238133","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.68462074,0.00056347816,0.00019612043,0.3103355,0.0009163396,0.00019854432,0.000021422316,0.000069450296,0.003078459],"genre_scores_gemma":[0.96117985,0.0012385403,0.00010761279,0.03547152,0.001899326,0.0000022592478,0.0000028444088,0.000017600927,0.00008047327],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976126,0.00030417324,0.0013463269,0.0002401338,0.00026813205,0.00022863217],"domain_scores_gemma":[0.9979251,0.00040526118,0.000486449,0.00014931809,0.0003226545,0.00071123656],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011717596,0.00019783912,0.0010011273,0.00023422026,0.00017549441,0.000005414313,0.00009053134,0.00019062567,0.00021683231],"category_scores_gemma":[0.0035985291,0.000117823176,0.00025605632,0.00039221483,0.0005227719,0.000084017294,0.000046350095,0.0009191163,0.000010277224],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009664635,0.0008408545,0.5358613,0.00018434676,0.0006773287,0.0021859796,0.00017685806,0.000027791963,0.27685213,0.0006218454,0.11672386,0.06488124],"study_design_scores_gemma":[0.007967521,0.012255166,0.3511286,0.00050927774,0.00067141844,0.003357562,0.0001390185,0.000075254255,0.0002018619,0.000106723644,0.62339324,0.00019434368],"about_ca_topic_score_codex":0.0000042281094,"about_ca_topic_score_gemma":0.00000238514,"teacher_disagreement_score":0.5066694,"about_ca_system_score_codex":0.000032421107,"about_ca_system_score_gemma":0.000063685424,"threshold_uncertainty_score":0.48046896},"labels":[],"label_agreement":null},{"id":"W67897207","doi":"10.1007/978-3-642-59681-0_4","title":"Pre-clinical Microbiology — Streptococcus Pneumoniae","year":2000,"lang":"en","type":"book-chapter","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Juravinski Hospital; Hamilton General Hospital","funders":"","keywords":"DNA gyrase; Sparfloxacin; Microbiology; Trovafloxacin; Topoisomerase IV; Streptococcus pneumoniae; Moxifloxacin; Ciprofloxacin; Antibiotics; Penicillin; Efflux; Antibiotic resistance; Norfloxacin; Biology; Ofloxacin; Escherichia coli; Genetics; Gene","score_opus":0.03134265751583706,"score_gpt":0.319497792717546,"score_spread":0.288155135201709,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W67897207","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0033997311,0.00020287558,0.000008283681,0.0008953743,0.0006619126,0.00080053107,0.00008287206,0.00026963418,0.9936788],"genre_scores_gemma":[0.0043826047,0.0008431891,0.000018430204,0.0035449201,0.0010164919,0.000024945735,0.00015793106,0.000085427564,0.98992604],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99820244,0.00003129705,0.0007746749,0.00060093583,0.00008464288,0.00030600818],"domain_scores_gemma":[0.9986787,0.000115658135,0.00016450888,0.0006750156,0.000085442756,0.0002806763],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001251835,0.00040812127,0.0008570693,0.00018535156,0.00008538346,0.000012657676,0.0001238614,0.0012372257,0.021812126],"category_scores_gemma":[0.000021699869,0.00031010417,0.000611532,0.000024018615,0.0003253215,0.00002311362,0.000055197845,0.0011179995,0.0051069628],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006911205,0.0024774412,0.056406233,0.00076312886,0.008051041,0.0029560009,0.0002168775,0.000013067135,0.08182307,0.09046435,0.4452997,0.31083795],"study_design_scores_gemma":[0.0006658034,0.00079245307,0.0029526737,0.00014463597,0.00033257244,0.00036711406,0.0000012862707,0.0000016705086,0.00003980117,0.0009737392,0.99341255,0.00031568788],"about_ca_topic_score_codex":0.0000053204476,"about_ca_topic_score_gemma":0.000033542525,"teacher_disagreement_score":0.54811287,"about_ca_system_score_codex":0.000060952134,"about_ca_system_score_gemma":0.0003104232,"threshold_uncertainty_score":0.9999351},"labels":[],"label_agreement":null},{"id":"W6885913140","doi":"10.1371/journal.pone.0275923.s007","title":"Results of sensitivity analyses of factors associated with pneumococcal non-vaccination among 19,742 Canadian Longitudinal Study on Aging (CLSA) participants aged 65 years and older who had complete data on all variables of interest–Scenarios 5–8.","year":2022,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Longitudinal study; Longitudinal data; Sensitivity (control systems); Ageing; Cohort study","score_opus":0.394506401611212,"score_gpt":0.3963673652063248,"score_spread":0.0018609635951128412,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6885913140","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8972951,0.0000047394483,5.8933375e-7,0.000049463557,0.000021896145,0.0004899652,0.1020536,0.000013920072,0.000070738344],"genre_scores_gemma":[0.98163205,4.11485e-7,0.0000014660789,0.00004666221,0.000012152536,0.000021910102,0.018251337,0.000017417971,0.000016600767],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983951,0.000371352,0.0003589264,0.0003398782,0.00029434884,0.00024042145],"domain_scores_gemma":[0.99831843,0.0005463848,0.00036617735,0.00044896515,0.0001375103,0.0001825483],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038301354,0.00015783752,0.0004546944,0.00033946944,0.00013443762,0.000012683608,0.000120699166,0.00006059014,0.0008180144],"category_scores_gemma":[0.0017218409,0.00013592039,0.00004430996,0.00039278902,0.000021475695,0.00009261451,0.00014722609,0.0003438771,0.0000011699933],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023576815,0.0013094844,0.97474885,0.00019173129,0.0010864304,0.00027164505,0.0030103358,0.0018996784,0.011918669,9.465402e-7,0.0051958584,0.00013060494],"study_design_scores_gemma":[0.0016838597,0.001085589,0.9925232,0.0010329732,0.00022700711,0.0000027382923,0.00089096144,0.0014989362,0.00086497323,5.5446407e-7,0.00007131707,0.00011787757],"about_ca_topic_score_codex":0.012445803,"about_ca_topic_score_gemma":0.115341775,"teacher_disagreement_score":0.102895975,"about_ca_system_score_codex":0.0001523814,"about_ca_system_score_gemma":0.000225175,"threshold_uncertainty_score":0.99413043},"labels":[],"label_agreement":null},{"id":"W6901483416","doi":"10.60692/73g2b-eap11","title":"Streptococcus pneumoniae Serotype-2 Childhood Meningitis in Bangladesh: A Newly Recognized Pneumococcal Infection Threat","year":2012,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Meningitis; Streptococcus pneumoniae; Serotype; Bacteremia; Pneumococcal infections; Pneumococcal conjugate vaccine","score_opus":0.02795596604122081,"score_gpt":0.24008858332749808,"score_spread":0.21213261728627728,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6901483416","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.987129,0.000007200036,0.00065429707,0.00011663045,0.0008397023,0.00137483,0.000046487774,0.00047411956,0.009357736],"genre_scores_gemma":[0.9988274,0.0000010159201,0.000038493024,0.00018991897,0.000346881,0.0003916683,0.00005647011,0.000028708464,0.00011947411],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99783653,0.00012391651,0.0009024114,0.00020795205,0.00034574146,0.0005834776],"domain_scores_gemma":[0.9987682,0.000015048601,0.00031305794,0.0004117656,0.0001670262,0.00032491377],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00045350764,0.0003242783,0.00048637265,0.0007311889,0.00019757375,0.00010147195,0.0000765801,0.00030057845,0.00009875543],"category_scores_gemma":[0.000054153126,0.00026894602,0.00018960031,0.0006558373,0.00003832471,0.0013176649,0.000052085565,0.000371601,0.001584748],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035829347,0.000028425344,0.97903705,0.00021861638,0.00006650156,0.0000066777516,0.019078748,0.000032687483,0.0003304598,0.000033025713,0.000032286433,0.0010996765],"study_design_scores_gemma":[0.00304412,0.00016942811,0.99098325,0.00041146937,0.00009540748,0.00044297986,0.0019331209,0.00027293287,0.0007806901,9.079111e-7,0.0015788474,0.00028687294],"about_ca_topic_score_codex":0.000035957793,"about_ca_topic_score_gemma":0.0000026902687,"teacher_disagreement_score":0.017145626,"about_ca_system_score_codex":0.0003825519,"about_ca_system_score_gemma":0.000098999204,"threshold_uncertainty_score":0.9999763},"labels":[],"label_agreement":null},{"id":"W6901560979","doi":"10.60692/mb591-q9627","title":"Incomplete Recovery of Pneumococcal CD4 T Cell Immunity after Initiation of Antiretroviral Therapy in HIV-Infected Malawian Adults","year":2014,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"CD154; ELISPOT; Immunity; Streptococcus pneumoniae; Cellular immunity; Vaccination; Pneumococcal infections; Colonisation; Immune system","score_opus":0.01632744383151582,"score_gpt":0.21064000729870183,"score_spread":0.194312563467186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6901560979","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99455535,0.0000019679158,0.0011209614,0.00001877246,0.00018507331,0.00049681455,0.000083611165,0.00006297368,0.003474451],"genre_scores_gemma":[0.99968964,7.896337e-7,0.000038490085,0.0001001765,0.000042940985,0.000047739115,0.000054602322,0.000010775358,0.000014874014],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99839365,0.00018119445,0.00091730704,0.000101704354,0.00022885432,0.00017726513],"domain_scores_gemma":[0.9988253,0.000019599554,0.0004818695,0.00034545068,0.00026322468,0.00006454615],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003483063,0.00016160942,0.00040075727,0.00056465965,0.00004378402,0.000017544766,0.00007407663,0.00015577259,0.000027271179],"category_scores_gemma":[0.000034282315,0.00013109336,0.00012573702,0.00035684212,0.00004968391,0.00044037265,0.000028796097,0.0001640068,0.00008828553],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047302977,0.000021431422,0.9861844,0.00082263234,0.000020848596,0.000001360187,0.010271307,0.000041669147,0.0016779118,0.000014810268,0.0000025515772,0.00046801046],"study_design_scores_gemma":[0.0031587896,0.0008050556,0.9860439,0.00052129594,0.000019966064,0.000020381063,0.0011163569,0.0010584462,0.0070609273,7.042761e-7,0.00007123015,0.00012296802],"about_ca_topic_score_codex":0.000033599674,"about_ca_topic_score_gemma":0.000001183021,"teacher_disagreement_score":0.00915495,"about_ca_system_score_codex":0.0000830157,"about_ca_system_score_gemma":0.000057427413,"threshold_uncertainty_score":0.5345832},"labels":[],"label_agreement":null},{"id":"W6901691108","doi":"10.60692/y0371-0ad35","title":"Streptococcus pneumoniae Serotype-2 Childhood Meningitis in Bangladesh: A Newly Recognized Pneumococcal Infection Threat","year":2012,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Meningitis; Streptococcus pneumoniae; Serotype; Bacteremia; Pneumococcal infections; Pneumococcal conjugate vaccine","score_opus":0.02795596604122081,"score_gpt":0.24008858332749808,"score_spread":0.21213261728627728,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6901691108","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.987129,0.000007200036,0.00065429707,0.00011663045,0.0008397023,0.00137483,0.000046487774,0.00047411956,0.009357736],"genre_scores_gemma":[0.9988274,0.0000010159201,0.000038493024,0.00018991897,0.000346881,0.0003916683,0.00005647011,0.000028708464,0.00011947411],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99783653,0.00012391651,0.0009024114,0.00020795205,0.00034574146,0.0005834776],"domain_scores_gemma":[0.9987682,0.000015048601,0.00031305794,0.0004117656,0.0001670262,0.00032491377],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00045350764,0.0003242783,0.00048637265,0.0007311889,0.00019757375,0.00010147195,0.0000765801,0.00030057845,0.00009875543],"category_scores_gemma":[0.000054153126,0.00026894602,0.00018960031,0.0006558373,0.00003832471,0.0013176649,0.000052085565,0.000371601,0.001584748],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035829347,0.000028425344,0.97903705,0.00021861638,0.00006650156,0.0000066777516,0.019078748,0.000032687483,0.0003304598,0.000033025713,0.000032286433,0.0010996765],"study_design_scores_gemma":[0.00304412,0.00016942811,0.99098325,0.00041146937,0.00009540748,0.00044297986,0.0019331209,0.00027293287,0.0007806901,9.079111e-7,0.0015788474,0.00028687294],"about_ca_topic_score_codex":0.000035957793,"about_ca_topic_score_gemma":0.0000026902687,"teacher_disagreement_score":0.017145626,"about_ca_system_score_codex":0.0003825519,"about_ca_system_score_gemma":0.000098999204,"threshold_uncertainty_score":0.9999763},"labels":[],"label_agreement":null},{"id":"W6901722717","doi":"10.60692/ht8ra-xng15","title":"Non-treatment of children with community health worker-diagnosed fast-breathing pneumonia in rural Malawi: exploratory subanalysis of a prospective cohort study","year":2016,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Pneumonia; Prospective cohort study; Community-acquired pneumonia; Malaria; Logistic regression; Observational study; Cohort study; Cohort","score_opus":0.022042623115623487,"score_gpt":0.2506002848727765,"score_spread":0.22855766175715303,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6901722717","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99667245,0.0000042313163,0.00040711282,0.00003613711,0.000043134176,0.002493759,0.00007573031,0.00006703158,0.00020038454],"genre_scores_gemma":[0.9995993,0.0000014149654,0.000018809716,0.000024823768,0.00001936244,0.00028559007,0.000016053302,0.000013963109,0.000020694131],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99807686,0.00024999102,0.00094880373,0.0001306354,0.0003599014,0.0002338349],"domain_scores_gemma":[0.9982947,0.000022627377,0.00067503843,0.0006101229,0.00027496822,0.00012253276],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005353449,0.00023529198,0.0008114567,0.0005700988,0.00015075244,0.00001827633,0.00009257536,0.000074960575,0.00000525074],"category_scores_gemma":[0.000011178702,0.00013287291,0.0001143383,0.00054901926,0.000077479155,0.0003999703,0.000030930445,0.00012107825,0.000023760942],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014289966,0.00015971538,0.91495365,0.0001300775,0.0005089693,0.0000044080525,0.08350622,0.00004422595,0.000026466814,0.0000019171457,7.8539983e-7,0.00052069564],"study_design_scores_gemma":[0.0049739643,0.0019801327,0.94082946,0.0008765351,0.00018695381,0.0000477941,0.05051734,0.00003768405,0.00043682402,9.867392e-8,0.0000013272046,0.00011187958],"about_ca_topic_score_codex":0.0006966734,"about_ca_topic_score_gemma":0.00007219719,"teacher_disagreement_score":0.03298888,"about_ca_system_score_codex":0.0006480068,"about_ca_system_score_gemma":0.00018914358,"threshold_uncertainty_score":0.54184},"labels":[],"label_agreement":null},{"id":"W6902044900","doi":"10.6084/m9.figshare.17982014.v1","title":"Additional file 1 of Clinical sign and biomarker-based algorithm to identify bacterial pneumonia among outpatients with lower respiratory tract infection in Tanzania","year":2022,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Pneumonia; Bacterial pneumonia; Pathogen; Tanzania; Respiratory tract infections; Lower respiratory tract infection","score_opus":0.052648209996833534,"score_gpt":0.33343381278701645,"score_spread":0.28078560279018294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6902044900","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.24748637,0.0000031188217,0.0000010754995,0.000021762453,0.00011785655,0.0004244485,0.75168663,0.00003488174,0.00022386848],"genre_scores_gemma":[0.362228,3.2468193e-7,0.00014208202,0.00075553026,0.00025259046,0.0030769946,0.633343,0.000052703614,0.0001487755],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9984157,0.00019484854,0.00049397233,0.0003434941,0.00035955582,0.00019243453],"domain_scores_gemma":[0.9986608,0.00057710725,0.00023679802,0.00020153528,0.00013629074,0.00018746936],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00011594297,0.0001564856,0.00032153772,0.00029965918,0.00013713761,0.000019029672,0.00006349074,0.00011049771,0.9036045],"category_scores_gemma":[0.0012579584,0.00014493143,0.000106609274,0.00046417143,0.000031026277,0.00011659217,0.00007606891,0.00034932917,0.00014722002],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024583263,0.0009107329,0.030851852,0.00007020096,0.000037928945,0.00012648746,0.000019493162,0.000022463302,0.00054832984,6.1056305e-8,0.95929676,0.007869866],"study_design_scores_gemma":[0.0009568546,0.0013261033,0.6404248,0.00062996225,0.000012476361,0.000013483963,0.000007421896,0.00017975492,0.000019626832,6.755606e-7,0.35632172,0.00010709722],"about_ca_topic_score_codex":0.000019000805,"about_ca_topic_score_gemma":0.000051692397,"teacher_disagreement_score":0.9034573,"about_ca_system_score_codex":0.00008590808,"about_ca_system_score_gemma":0.00036289144,"threshold_uncertainty_score":0.5910132},"labels":[],"label_agreement":null},{"id":"W6902056759","doi":"10.6084/m9.figshare.17982014","title":"Additional file 1 of Clinical sign and biomarker-based algorithm to identify bacterial pneumonia among outpatients with lower respiratory tract infection in Tanzania","year":2022,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Pneumonia; Bacterial pneumonia; Pathogen; Tanzania; Respiratory tract infections; Lower respiratory tract infection","score_opus":0.052648209996833534,"score_gpt":0.33343381278701645,"score_spread":0.28078560279018294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6902056759","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.24748637,0.0000031188217,0.0000010754995,0.000021762453,0.00011785655,0.0004244485,0.75168663,0.00003488174,0.00022386848],"genre_scores_gemma":[0.362228,3.2468193e-7,0.00014208202,0.00075553026,0.00025259046,0.0030769946,0.633343,0.000052703614,0.0001487755],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9984157,0.00019484854,0.00049397233,0.0003434941,0.00035955582,0.00019243453],"domain_scores_gemma":[0.9986608,0.00057710725,0.00023679802,0.00020153528,0.00013629074,0.00018746936],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00011594297,0.0001564856,0.00032153772,0.00029965918,0.00013713761,0.000019029672,0.00006349074,0.00011049771,0.9036045],"category_scores_gemma":[0.0012579584,0.00014493143,0.000106609274,0.00046417143,0.000031026277,0.00011659217,0.00007606891,0.00034932917,0.00014722002],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024583263,0.0009107329,0.030851852,0.00007020096,0.000037928945,0.00012648746,0.000019493162,0.000022463302,0.00054832984,6.1056305e-8,0.95929676,0.007869866],"study_design_scores_gemma":[0.0009568546,0.0013261033,0.6404248,0.00062996225,0.000012476361,0.000013483963,0.000007421896,0.00017975492,0.000019626832,6.755606e-7,0.35632172,0.00010709722],"about_ca_topic_score_codex":0.000019000805,"about_ca_topic_score_gemma":0.000051692397,"teacher_disagreement_score":0.9034573,"about_ca_system_score_codex":0.00008590808,"about_ca_system_score_gemma":0.00036289144,"threshold_uncertainty_score":0.5910132},"labels":[],"label_agreement":null},{"id":"W6902065442","doi":"10.6084/m9.figshare.22614893.v1","title":"Additional file 1 of The burden of lower respiratory infections and their underlying etiologies in the Middle East and North Africa region, 1990–2019: results from the Global Burden of Disease Study 2019","year":2023,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Incidence (geometry); Burden of disease; Middle East; Etiology; Respiratory system; Disease burden; Disease; Respiratory disease","score_opus":0.13933158782661256,"score_gpt":0.2794492208105177,"score_spread":0.14011763298390514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6902065442","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.23301505,0.00013359613,4.2287525e-8,0.0006098549,0.00002651929,0.00046209802,0.76537865,0.000018865923,0.00035533227],"genre_scores_gemma":[0.95017934,0.000008078421,7.584274e-7,0.00008463567,0.00011657589,0.00025188693,0.04925618,0.0000079469955,0.000094616604],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.99896973,0.00021042248,0.00029613287,0.00019869683,0.00019432964,0.00013069333],"domain_scores_gemma":[0.9971049,0.0020658495,0.0002088546,0.00043554892,0.00013700874,0.000047830068],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00008152372,0.0001231806,0.00019293172,0.000050356302,0.00017797835,0.0000126094055,0.00017271106,0.000060465274,0.019816274],"category_scores_gemma":[0.0035398568,0.0000605611,0.00008674598,0.0005852655,0.000121562975,0.00005361171,0.00016774361,0.00018039031,0.00002281099],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006951387,0.00012567386,0.0035575484,0.000041593667,0.00006716905,0.000007705685,0.003993383,0.0001994554,0.000025532183,0.0000025401337,0.99175775,0.00015214144],"study_design_scores_gemma":[0.00058650377,0.00030152328,0.7943286,0.0013892375,0.00004255816,0.000004938397,0.0101025365,0.000066084496,0.0000011852263,0.00009791213,0.19300362,0.00007533922],"about_ca_topic_score_codex":0.00019340224,"about_ca_topic_score_gemma":0.00028376174,"teacher_disagreement_score":0.7987541,"about_ca_system_score_codex":0.000021620392,"about_ca_system_score_gemma":0.00018317647,"threshold_uncertainty_score":0.98107976},"labels":[],"label_agreement":null},{"id":"W6902132044","doi":"10.6084/m9.figshare.22059173","title":"The epidemiology and healthcare costs of community-acquired pneumonia in Ontario, Canada: a population-based cohort study","year":2023,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Propensity score matching; Epidemiology; Incidence (geometry); Health care; Cohort study; Pneumonia; Retrospective cohort study; Ambulatory care; Population; Cohort","score_opus":0.07729156081018274,"score_gpt":0.3381310327199884,"score_spread":0.26083947190980566,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6902132044","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9900095,0.000050144867,2.1963375e-8,0.0026273113,0.000057162768,0.0008190988,0.0063062226,0.000032717333,0.00009785717],"genre_scores_gemma":[0.9879345,0.0000014489922,6.0906837e-7,0.00095233915,0.000011636695,0.00026763868,0.010747571,0.000009822705,0.00007438711],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987234,0.00051045284,0.0003290326,0.00010497931,0.00012032894,0.00021184774],"domain_scores_gemma":[0.9979943,0.0013987699,0.000105612606,0.00031541035,0.00008991551,0.00009601197],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000390122,0.000092163275,0.00030531955,0.00008289776,0.00030314008,0.0000039185943,0.00007759032,0.000063979685,0.00094712334],"category_scores_gemma":[0.0018022188,0.00006760679,0.000029036359,0.00027286174,0.000012679719,0.000016688058,0.00004875117,0.00030707565,0.000010462369],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001261557,0.0000472054,0.9926775,0.00005613675,0.000021703367,0.000017411707,0.00017545684,0.00005353164,0.000021072074,0.0000037395923,0.006522674,0.00039094905],"study_design_scores_gemma":[0.00040426804,0.00019343618,0.9942764,0.00032042593,0.000011117009,0.0000060409943,0.00041287075,0.00013275181,0.0000028750824,0.0000094507395,0.00417625,0.00005409906],"about_ca_topic_score_codex":0.9573814,"about_ca_topic_score_gemma":0.9985858,"teacher_disagreement_score":0.041204367,"about_ca_system_score_codex":0.00043811096,"about_ca_system_score_gemma":0.0009970955,"threshold_uncertainty_score":0.99996614},"labels":[],"label_agreement":null},{"id":"W6902196186","doi":"10.6084/m9.figshare.22614896","title":"Additional file 2 of The burden of lower respiratory infections and their underlying etiologies in the Middle East and North Africa region, 1990–2019: results from the Global Burden of Disease Study 2019","year":2023,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Burden of disease; Middle East; Etiology; Disease burden; Respiratory system; Disease; Respiratory disease; Incidence (geometry)","score_opus":0.13558456602078453,"score_gpt":0.2789481786162112,"score_spread":0.14336361259542665,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6902196186","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.23256464,0.00013571342,4.160383e-8,0.00060851173,0.00002671001,0.000462418,0.76582,0.00001890377,0.00036301915],"genre_scores_gemma":[0.94993913,0.000008271736,7.4527003e-7,0.000084761654,0.000118216514,0.0002481214,0.0494978,0.000007948963,0.000095019524],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.99896985,0.00021036177,0.00029624617,0.00019856993,0.00019428828,0.00013065232],"domain_scores_gemma":[0.9971306,0.002040952,0.00020910097,0.00043483035,0.00013674717,0.000047823465],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00008114412,0.00012314721,0.000192972,0.000050328195,0.00017798947,0.000012632735,0.00017262911,0.000060465572,0.019503692],"category_scores_gemma":[0.0035035233,0.000060544222,0.00008673168,0.0005848778,0.00012156154,0.00005364303,0.0001677235,0.00018035491,0.000022603332],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006938391,0.0001259891,0.003471052,0.000042031676,0.00006735679,0.000007907107,0.0040073907,0.0002008305,0.000024845538,0.0000025853813,0.99182445,0.0001561934],"study_design_scores_gemma":[0.0005896645,0.00030143323,0.78926134,0.0013740171,0.000042407995,0.0000049455534,0.010010722,0.000065678694,0.0000011784175,0.0000985328,0.19817488,0.000075171185],"about_ca_topic_score_codex":0.00019506241,"about_ca_topic_score_gemma":0.0002851926,"teacher_disagreement_score":0.79364955,"about_ca_system_score_codex":0.000021625672,"about_ca_system_score_gemma":0.00018248132,"threshold_uncertainty_score":0.9813926},"labels":[],"label_agreement":null},{"id":"W6902313908","doi":"10.6084/m9.figshare.19497969","title":"Additional file 1 of Etiology and the challenge of diagnostic testing of community-acquired pneumonia in children and adolescents","year":2022,"lang":"en","type":"article","venue":"Open MIND","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Etiology; Diagnostic test; Pneumonia; Ventilator-associated pneumonia; MEDLINE","score_opus":0.03289286333724058,"score_gpt":0.28151607113672716,"score_spread":0.2486232077994866,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6902313908","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9662593,0.000044100478,9.95014e-8,0.0002359366,0.000009132001,0.00035721794,0.031952918,4.6598706e-7,0.0011408145],"genre_scores_gemma":[0.99855465,0.000011221366,0.00006381722,0.000044390636,0.000007898255,0.00009450703,0.0011905981,0.0000040677714,0.000028872591],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992599,0.00033656802,0.0002037181,0.000065922395,0.00007107249,0.0000628164],"domain_scores_gemma":[0.9966501,0.0030224263,0.00013957509,0.00013260858,0.000033166365,0.000022150745],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002834009,0.000049639686,0.00021875765,0.000057670477,0.00010690804,0.0000022163122,0.000097089774,0.000024771569,0.039362773],"category_scores_gemma":[0.0018092709,0.00003777178,0.000017782442,0.00011587902,0.00030140873,0.000022422852,0.000277995,0.00016455026,0.0000012201922],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009660929,0.0043932414,0.814438,0.00034575613,0.00039820725,0.000023753619,0.009479321,0.00010071751,0.017261272,0.000070533366,0.034205414,0.118317686],"study_design_scores_gemma":[0.0016148385,0.00043601997,0.99238753,0.00028041535,0.00003009885,0.00008111759,0.00043547316,0.00003007303,0.000060535825,0.00005303298,0.004552996,0.00003785701],"about_ca_topic_score_codex":0.0001293826,"about_ca_topic_score_gemma":0.000045903624,"teacher_disagreement_score":0.17794953,"about_ca_system_score_codex":0.000008073469,"about_ca_system_score_gemma":0.00005708542,"threshold_uncertainty_score":0.96151537},"labels":[],"label_agreement":null},{"id":"W6902315581","doi":"10.6084/m9.figshare.29386446","title":"Does pneumonia increase the risk of dementia and cognitive decline? A systematic review and meta-analysis","year":2025,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Dementia; Pneumonia; Observational study; Odds ratio; Meta-analysis; Subgroup analysis; Hazard ratio; MEDLINE","score_opus":0.0297239832094031,"score_gpt":0.31337654530545334,"score_spread":0.2836525620960502,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6902315581","genre_codex":"review","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.025001455,0.58831376,0.000025283083,0.0099772,0.000040539842,0.008686793,0.36506584,0.00012600345,0.0027631256],"genre_scores_gemma":[0.99138874,0.0010300541,0.000005871605,0.0044020484,0.000008051507,0.00077995326,0.0017146422,0.0000071478958,0.00066349696],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99912995,0.00021676588,0.00031263728,0.0001561738,0.000106072825,0.000078372315],"domain_scores_gemma":[0.9987144,0.000607986,0.00020103231,0.00022997132,0.0001916659,0.000054935972],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00019242508,0.00011177954,0.0009392151,0.00010348176,0.000106507236,0.000016560089,0.00004892434,0.000038525937,0.0075405673],"category_scores_gemma":[0.003259158,0.000043979555,0.0003452802,0.0004328896,0.000021099015,0.000030722153,0.00008754803,0.000106399086,0.0000185311],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013514254,0.00014529712,0.020361837,0.49362525,0.4803032,0.000023151806,0.0001491134,0.000001137808,0.000116143114,0.000020419966,0.0051871496,0.000053802447],"study_design_scores_gemma":[0.00017677309,0.000029861667,0.035914555,0.010273159,0.9524721,0.000009327508,0.000067778965,0.000032741773,0.000056275952,0.00002154275,0.0008831922,0.000062676794],"about_ca_topic_score_codex":0.000025987549,"about_ca_topic_score_gemma":0.00008364559,"teacher_disagreement_score":0.9663873,"about_ca_system_score_codex":0.000004285513,"about_ca_system_score_gemma":0.000038083133,"threshold_uncertainty_score":0.99336666},"labels":[],"label_agreement":null},{"id":"W6902372528","doi":"10.6084/m9.figshare.22614893","title":"Additional file 1 of The burden of lower respiratory infections and their underlying etiologies in the Middle East and North Africa region, 1990–2019: results from the Global Burden of Disease Study 2019","year":2023,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Incidence (geometry); Burden of disease; Middle East; Etiology; Respiratory system; Disease burden; Disease; Respiratory disease","score_opus":0.13933158782661256,"score_gpt":0.2794492208105177,"score_spread":0.14011763298390514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6902372528","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.23301505,0.00013359613,4.2287525e-8,0.0006098549,0.00002651929,0.00046209802,0.76537865,0.000018865923,0.00035533227],"genre_scores_gemma":[0.95017934,0.000008078421,7.584274e-7,0.00008463567,0.00011657589,0.00025188693,0.04925618,0.0000079469955,0.000094616604],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.99896973,0.00021042248,0.00029613287,0.00019869683,0.00019432964,0.00013069333],"domain_scores_gemma":[0.9971049,0.0020658495,0.0002088546,0.00043554892,0.00013700874,0.000047830068],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00008152372,0.0001231806,0.00019293172,0.000050356302,0.00017797835,0.0000126094055,0.00017271106,0.000060465274,0.019816274],"category_scores_gemma":[0.0035398568,0.0000605611,0.00008674598,0.0005852655,0.000121562975,0.00005361171,0.00016774361,0.00018039031,0.00002281099],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006951387,0.00012567386,0.0035575484,0.000041593667,0.00006716905,0.000007705685,0.003993383,0.0001994554,0.000025532183,0.0000025401337,0.99175775,0.00015214144],"study_design_scores_gemma":[0.00058650377,0.00030152328,0.7943286,0.0013892375,0.00004255816,0.000004938397,0.0101025365,0.000066084496,0.0000011852263,0.00009791213,0.19300362,0.00007533922],"about_ca_topic_score_codex":0.00019340224,"about_ca_topic_score_gemma":0.00028376174,"teacher_disagreement_score":0.7987541,"about_ca_system_score_codex":0.000021620392,"about_ca_system_score_gemma":0.00018317647,"threshold_uncertainty_score":0.98107976},"labels":[],"label_agreement":null},{"id":"W6902434524","doi":"10.6084/m9.figshare.29510644.v1","title":"Additional file 1 of Community versus academic hospital community-acquired pneumonia patients: a nested cohort study","year":2025,"lang":"en","type":"article","venue":"Open MIND","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital; University of Calgary; Kingston General Hospital; Sunnybrook Health Science Centre; Memorial University of Newfoundland; Université de Sherbrooke; University of Toronto; William Osler Health System; Université Laval; McGill University Health Centre; University of Ottawa; Lions Gate Hospital; Humber River Regional Hospital; Surrey Memorial Hospital; University of British Columbia","funders":"","keywords":"Pneumonia; Nested case-control study; Cohort study; Cohort; Retrospective cohort study; MEDLINE","score_opus":0.04276476495415704,"score_gpt":0.3448652191386498,"score_spread":0.3021004541844928,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6902434524","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.90183294,0.0000023294574,4.587949e-7,0.00015132072,0.00019480876,0.0014206803,0.0737895,0.000007020276,0.022600949],"genre_scores_gemma":[0.9634384,0.0000013028393,0.00006974606,0.00018751391,0.000026883537,0.0005860882,0.033299573,0.000014370696,0.0023761273],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.99826795,0.00079577294,0.00040192882,0.00013139825,0.00022647377,0.00017645721],"domain_scores_gemma":[0.99664575,0.0021577405,0.00017284884,0.00065097044,0.0002766055,0.00009608649],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003766351,0.00016092006,0.00039135964,0.00014622303,0.0006129987,0.00002786097,0.000474006,0.00014062492,0.23895742],"category_scores_gemma":[0.0017665051,0.00014931755,0.00008227064,0.00046307454,0.00019459802,0.00016428695,0.0004888421,0.00089915324,0.0002280643],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00051242835,0.008947021,0.20763446,0.000036067846,0.0006907133,0.000008314821,0.002727249,0.0000023560974,0.0005924653,0.000002242888,0.768236,0.010610702],"study_design_scores_gemma":[0.0024929787,0.0016774687,0.76390076,0.00021250457,0.00015722583,0.0000016911072,0.003917997,0.00000501525,0.000054650347,0.0000054868506,0.22746977,0.00010444034],"about_ca_topic_score_codex":0.0002362483,"about_ca_topic_score_gemma":0.00019282292,"teacher_disagreement_score":0.5562663,"about_ca_system_score_codex":0.00011131517,"about_ca_system_score_gemma":0.00030078567,"threshold_uncertainty_score":0.7617383},"labels":[],"label_agreement":null},{"id":"W6904601096","doi":"10.14288/1.0135719","title":"Socioeconomic status and hospital utilization among younger adult pneumonia admissions at a Canadian hospital","year":2015,"lang":"en","type":"article","venue":"Open Collections","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Socioeconomic status; Pneumonia; Household income; Cohort; Hospital admission; Cohort study; Longitudinal study; Chart","score_opus":0.021803087089556875,"score_gpt":0.2746178595221842,"score_spread":0.25281477243262734,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6904601096","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8696727,0.0000704284,0.000011592777,0.005360374,0.0009866783,0.0015084344,0.00015072885,0.000090306276,0.12214876],"genre_scores_gemma":[0.8957948,0.00010824636,0.00006099284,0.00077126524,0.00012415888,0.00025955847,0.00007113257,0.000039262577,0.10277059],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988048,0.000047721525,0.00024646026,0.00036161375,0.00011981085,0.0004195843],"domain_scores_gemma":[0.99754477,0.000027736018,0.00008227189,0.0002674874,0.00029110795,0.0017866042],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.000096502525,0.00018403279,0.00025211033,0.00018574896,0.0024244317,0.00044645558,0.00009832316,0.00016657903,0.0008226012],"category_scores_gemma":[0.00026807253,0.00017707299,0.00007093673,0.0004453844,0.00012420974,0.00043739087,0.00012018071,0.0002137511,0.000094873976],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000472424,0.00048680342,0.45279643,0.00001756947,0.0002526145,0.00006975244,0.0023481655,0.000036932972,0.00034901424,0.00018965399,0.54287297,0.0005328922],"study_design_scores_gemma":[0.0033501377,0.0015215822,0.4344692,0.00007522416,0.00028053616,0.00018922916,0.0030904273,0.0007910756,0.00012765106,0.00031995823,0.5551893,0.0005956304],"about_ca_topic_score_codex":0.18924165,"about_ca_topic_score_gemma":0.32181308,"teacher_disagreement_score":0.13257143,"about_ca_system_score_codex":0.0011413454,"about_ca_system_score_gemma":0.0022235874,"threshold_uncertainty_score":0.99887425},"labels":[],"label_agreement":null},{"id":"W6904670963","doi":"10.1371/journal.pone.0267051.s009","title":"Concentrations of pneumococcal capsular polysaccharide IgG (μg/ mL).","year":2022,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Serotype; Streptococcus pneumoniae; Pneumococcal disease; Statistical analysis; Polysaccharide; Detection limit","score_opus":0.03105491730165637,"score_gpt":0.27662417378318427,"score_spread":0.2455692564815279,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6904670963","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5271481,0.0007897705,0.000008426149,0.00346189,0.0005992996,0.0016301081,0.44727966,0.0004092387,0.018673481],"genre_scores_gemma":[0.98621213,0.0000015237841,0.000007968278,0.0006870484,0.00011370351,0.0002974244,0.01213523,0.00001608841,0.00052889803],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992159,0.000040996933,0.00019881174,0.00015352014,0.00022277574,0.0001679999],"domain_scores_gemma":[0.9994457,0.000045034256,0.00008003017,0.00023901623,0.00008285357,0.00010737661],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000031262185,0.00008591306,0.00016547611,0.00008123335,0.0002233207,0.000007198596,0.00008852349,0.0000391915,0.2136128],"category_scores_gemma":[0.00023748103,0.00008306215,0.00011601152,0.0002565614,0.000011032871,0.000045814333,0.000081700644,0.00024209399,0.00029326905],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022700326,0.00042052154,0.0051485766,0.00018868878,0.000112497786,0.0001552729,0.000475229,0.00025236912,0.81406146,0.00022890263,0.17843263,0.0005011365],"study_design_scores_gemma":[0.0010245484,0.0004926391,0.048474725,0.0002625611,0.00007892553,0.0003008027,0.00038880092,0.00034194614,0.029098786,0.000033353983,0.91928315,0.00021974831],"about_ca_topic_score_codex":0.00001083502,"about_ca_topic_score_gemma":0.0000035888747,"teacher_disagreement_score":0.7849627,"about_ca_system_score_codex":0.00006662503,"about_ca_system_score_gemma":0.000252881,"threshold_uncertainty_score":0.78710604},"labels":[],"label_agreement":null},{"id":"W6904834151","doi":"10.1371/journal.pone.0275923.s009","title":"Results of sensitivity analyses of factors associated with pneumococcal non-vaccination among 10,284 Canadian Longitudinal Study on Aging (CLSA) participants aged under 65 years who had been diagnosed with at least one chronic medical condition that made them eligible for pneumococcal vaccination–Scenarios 5–8.","year":2022,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Longitudinal study; Cohort study; Longitudinal data; Pneumococcal vaccine; Sensitivity (control systems); Pneumococcal vaccination; Epidemiology; Ageing","score_opus":0.1792121129235829,"score_gpt":0.36416075256396163,"score_spread":0.18494863964037872,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6904834151","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9692191,0.000008665545,0.000008773756,0.00022936215,0.000032829146,0.0017168304,0.028600125,0.000053993084,0.00013032691],"genre_scores_gemma":[0.97660357,0.0000012285598,0.0000014279939,0.000050830517,0.000054047017,0.00047120595,0.022620868,0.000049317732,0.00014748856],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99709016,0.00040590114,0.00047584492,0.0005068672,0.0009949428,0.00052630366],"domain_scores_gemma":[0.99742967,0.0009721613,0.00053364463,0.00033398136,0.0003498987,0.00038066175],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00050678564,0.00029192746,0.0006495897,0.00042516596,0.00048463623,0.000026773589,0.00013416995,0.00017498754,0.0075701987],"category_scores_gemma":[0.0012696921,0.00024746044,0.0001428624,0.0006971844,0.000031608717,0.00017608075,0.000084591826,0.0005130303,0.000010926425],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009979986,0.0033156374,0.9619535,0.0003878829,0.0021330968,0.00050224125,0.0030277914,0.009920498,0.013376618,0.0000033657896,0.004006522,0.00037483894],"study_design_scores_gemma":[0.005738256,0.0024349634,0.9819135,0.0010435253,0.00040748736,0.000012448645,0.0011355217,0.0015650922,0.0054396386,0.0000018370305,0.00004953673,0.00025820287],"about_ca_topic_score_codex":0.0029418117,"about_ca_topic_score_gemma":0.13939121,"teacher_disagreement_score":0.1364494,"about_ca_system_score_codex":0.0013748191,"about_ca_system_score_gemma":0.0010338255,"threshold_uncertainty_score":0.99999774},"labels":[],"label_agreement":null},{"id":"W6920541769","doi":"10.60692/bqn29-z7535","title":"Non-treatment of children with community health worker-diagnosed fast-breathing pneumonia in rural Malawi: exploratory subanalysis of a prospective cohort study","year":2016,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Pneumonia; Prospective cohort study; Community-acquired pneumonia; Malaria; Logistic regression; Observational study; Cohort study; Cohort","score_opus":0.022042623115623487,"score_gpt":0.2506002848727765,"score_spread":0.22855766175715303,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6920541769","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99667245,0.0000042313163,0.00040711282,0.00003613711,0.000043134176,0.002493759,0.00007573031,0.00006703158,0.00020038454],"genre_scores_gemma":[0.9995993,0.0000014149654,0.000018809716,0.000024823768,0.00001936244,0.00028559007,0.000016053302,0.000013963109,0.000020694131],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99807686,0.00024999102,0.00094880373,0.0001306354,0.0003599014,0.0002338349],"domain_scores_gemma":[0.9982947,0.000022627377,0.00067503843,0.0006101229,0.00027496822,0.00012253276],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005353449,0.00023529198,0.0008114567,0.0005700988,0.00015075244,0.00001827633,0.00009257536,0.000074960575,0.00000525074],"category_scores_gemma":[0.000011178702,0.00013287291,0.0001143383,0.00054901926,0.000077479155,0.0003999703,0.000030930445,0.00012107825,0.000023760942],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014289966,0.00015971538,0.91495365,0.0001300775,0.0005089693,0.0000044080525,0.08350622,0.00004422595,0.000026466814,0.0000019171457,7.8539983e-7,0.00052069564],"study_design_scores_gemma":[0.0049739643,0.0019801327,0.94082946,0.0008765351,0.00018695381,0.0000477941,0.05051734,0.00003768405,0.00043682402,9.867392e-8,0.0000013272046,0.00011187958],"about_ca_topic_score_codex":0.0006966734,"about_ca_topic_score_gemma":0.00007219719,"teacher_disagreement_score":0.03298888,"about_ca_system_score_codex":0.0006480068,"about_ca_system_score_gemma":0.00018914358,"threshold_uncertainty_score":0.54184},"labels":[],"label_agreement":null},{"id":"W6920592135","doi":"10.60692/acm1s-9vc98","title":"Etiology and the challenge of diagnostic testing of community-acquired pneumonia in children and adolescents","year":2022,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Etiology; Pneumonia; Mycoplasma pneumoniae; Atypical pneumonia; Streptococcus pneumoniae; Sputum; Population; Serology; Tuberculosis","score_opus":0.02946109380176287,"score_gpt":0.22708835334083208,"score_spread":0.1976272595390692,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6920592135","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990074,0.000014434512,0.00003104117,0.00014128206,0.000043948447,0.00045033995,0.00004115382,0.000018397996,0.0002520086],"genre_scores_gemma":[0.99981284,0.0000011793982,0.000004928082,0.00010470773,0.000008470412,0.000056059485,0.0000062497934,0.0000035300966,0.0000020250943],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99905854,0.00030524834,0.00040986182,0.000040014947,0.00010402407,0.00008231949],"domain_scores_gemma":[0.999424,0.000089203306,0.00023404865,0.00017268129,0.00005318403,0.000026908114],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005539363,0.00006862277,0.00023619062,0.00016606794,0.0001644052,0.0000056887934,0.00005414434,0.000034371846,0.0000021728179],"category_scores_gemma":[0.0001711736,0.00004706871,0.000022196335,0.00015349947,0.00012306562,0.000067558416,0.000111467634,0.00015102031,0.0000014132842],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046795976,0.0000077420245,0.9649331,0.00033006453,0.000020836529,4.3103867e-7,0.034154266,0.000042703607,0.000026774147,0.000054880147,9.867304e-7,0.00038140008],"study_design_scores_gemma":[0.002623374,0.00017325541,0.9888311,0.00019535357,0.000033278346,0.00018335925,0.0076484876,0.00023585766,0.00002364014,0.0000020512048,0.000010913187,0.000039330662],"about_ca_topic_score_codex":0.000058521175,"about_ca_topic_score_gemma":5.531081e-7,"teacher_disagreement_score":0.02650578,"about_ca_system_score_codex":0.000024506964,"about_ca_system_score_gemma":0.000018699711,"threshold_uncertainty_score":0.19194062},"labels":[],"label_agreement":null},{"id":"W6920596248","doi":"10.60692/642ys-hfk60","title":"Incomplete Recovery of Pneumococcal CD4 T Cell Immunity after Initiation of Antiretroviral Therapy in HIV-Infected Malawian Adults","year":2014,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"CD154; ELISPOT; Immunity; Streptococcus pneumoniae; Cellular immunity; Vaccination; Pneumococcal infections; Colonisation; Immune system","score_opus":0.01632744383151582,"score_gpt":0.21064000729870183,"score_spread":0.194312563467186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6920596248","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99455535,0.0000019679158,0.0011209614,0.00001877246,0.00018507331,0.00049681455,0.000083611165,0.00006297368,0.003474451],"genre_scores_gemma":[0.99968964,7.896337e-7,0.000038490085,0.0001001765,0.000042940985,0.000047739115,0.000054602322,0.000010775358,0.000014874014],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99839365,0.00018119445,0.00091730704,0.000101704354,0.00022885432,0.00017726513],"domain_scores_gemma":[0.9988253,0.000019599554,0.0004818695,0.00034545068,0.00026322468,0.00006454615],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003483063,0.00016160942,0.00040075727,0.00056465965,0.00004378402,0.000017544766,0.00007407663,0.00015577259,0.000027271179],"category_scores_gemma":[0.000034282315,0.00013109336,0.00012573702,0.00035684212,0.00004968391,0.00044037265,0.000028796097,0.0001640068,0.00008828553],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047302977,0.000021431422,0.9861844,0.00082263234,0.000020848596,0.000001360187,0.010271307,0.000041669147,0.0016779118,0.000014810268,0.0000025515772,0.00046801046],"study_design_scores_gemma":[0.0031587896,0.0008050556,0.9860439,0.00052129594,0.000019966064,0.000020381063,0.0011163569,0.0010584462,0.0070609273,7.042761e-7,0.00007123015,0.00012296802],"about_ca_topic_score_codex":0.000033599674,"about_ca_topic_score_gemma":0.000001183021,"teacher_disagreement_score":0.00915495,"about_ca_system_score_codex":0.0000830157,"about_ca_system_score_gemma":0.000057427413,"threshold_uncertainty_score":0.5345832},"labels":[],"label_agreement":null},{"id":"W6920703344","doi":"10.6084/m9.figshare.22059173.v1","title":"The epidemiology and healthcare costs of community-acquired pneumonia in Ontario, Canada: a population-based cohort study","year":2023,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Propensity score matching; Epidemiology; Incidence (geometry); Health care; Cohort study; Pneumonia; Retrospective cohort study; Ambulatory care; Population; Cohort","score_opus":0.07729156081018274,"score_gpt":0.3381310327199884,"score_spread":0.26083947190980566,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6920703344","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9900095,0.000050144867,2.1963375e-8,0.0026273113,0.000057162768,0.0008190988,0.0063062226,0.000032717333,0.00009785717],"genre_scores_gemma":[0.9879345,0.0000014489922,6.0906837e-7,0.00095233915,0.000011636695,0.00026763868,0.010747571,0.000009822705,0.00007438711],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987234,0.00051045284,0.0003290326,0.00010497931,0.00012032894,0.00021184774],"domain_scores_gemma":[0.9979943,0.0013987699,0.000105612606,0.00031541035,0.00008991551,0.00009601197],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000390122,0.000092163275,0.00030531955,0.00008289776,0.00030314008,0.0000039185943,0.00007759032,0.000063979685,0.00094712334],"category_scores_gemma":[0.0018022188,0.00006760679,0.000029036359,0.00027286174,0.000012679719,0.000016688058,0.00004875117,0.00030707565,0.000010462369],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001261557,0.0000472054,0.9926775,0.00005613675,0.000021703367,0.000017411707,0.00017545684,0.00005353164,0.000021072074,0.0000037395923,0.006522674,0.00039094905],"study_design_scores_gemma":[0.00040426804,0.00019343618,0.9942764,0.00032042593,0.000011117009,0.0000060409943,0.00041287075,0.00013275181,0.0000028750824,0.0000094507395,0.00417625,0.00005409906],"about_ca_topic_score_codex":0.9573814,"about_ca_topic_score_gemma":0.9985858,"teacher_disagreement_score":0.041204367,"about_ca_system_score_codex":0.00043811096,"about_ca_system_score_gemma":0.0009970955,"threshold_uncertainty_score":0.99996614},"labels":[],"label_agreement":null},{"id":"W6920740253","doi":"10.6084/m9.figshare.22610570.v1","title":"Additional file 1 of Increasing pneumococcal vaccine uptake in older adults: a scoping review of interventions in high-income countries","year":2023,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto","funders":"","keywords":"Psychological intervention; Table (database); Pneumococcal vaccine; MEDLINE; Systematic review; Pneumococcal disease","score_opus":0.027891557782440738,"score_gpt":0.31577696240596903,"score_spread":0.2878854046235283,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6920740253","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.01073146,0.001086823,5.3788096e-8,0.00021453714,0.00002327473,0.0006653074,0.9869777,0.00004318564,0.000257647],"genre_scores_gemma":[0.038322,0.00034928482,0.000039951083,0.00027017467,0.00008337252,0.0021712338,0.9586067,0.000024753524,0.0001324959],"study_design_codex":"not_applicable","study_design_gemma":"systematic_review","domain_scores_codex":[0.9988065,0.00006427704,0.00064252195,0.00015679187,0.00017038334,0.00015956371],"domain_scores_gemma":[0.9985123,0.0008931605,0.00020289137,0.00016405225,0.0001773209,0.000050268256],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009670164,0.00010175581,0.00040595757,0.00037483478,0.00002742074,0.0000039951233,0.000068187306,0.000071345276,0.9334193],"category_scores_gemma":[0.005845506,0.00009447359,0.00015138283,0.00087036425,0.000009523254,0.00008894682,0.00006505168,0.00016686419,0.00047551483],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029448915,0.00017078049,0.0017046224,0.094919264,0.000023598752,0.00006429868,0.00005301164,0.0000046976443,0.000045895766,0.000003343841,0.9025451,0.0004359137],"study_design_scores_gemma":[0.00042432363,0.000051269908,0.3735738,0.6112791,0.000007920499,0.000017596367,0.000019635585,0.000017496635,0.000016280226,0.0000021489068,0.014539445,0.00005098034],"about_ca_topic_score_codex":0.000018209486,"about_ca_topic_score_gemma":0.00020023,"teacher_disagreement_score":0.93294376,"about_ca_system_score_codex":0.00005349611,"about_ca_system_score_gemma":0.00021930692,"threshold_uncertainty_score":0.6998039},"labels":[],"label_agreement":null},{"id":"W6921001874","doi":"10.6084/m9.figshare.22614902.v1","title":"Additional file 4 of The burden of lower respiratory infections and their underlying etiologies in the Middle East and North Africa region, 1990–2019: results from the Global Burden of Disease Study 2019","year":2023,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Incidence (geometry); Middle East; Burden of disease; Etiology; Respiratory system; Disease; Disease burden","score_opus":0.1381878999531611,"score_gpt":0.2794482219268291,"score_spread":0.141260321973668,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6921001874","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.23366493,0.0001347712,4.2775202e-8,0.0006071355,0.000026562044,0.00046296965,0.76472795,0.000018889019,0.0003567534],"genre_scores_gemma":[0.95100826,0.000008152025,7.4908644e-7,0.000084390806,0.00011634376,0.00024707546,0.048434064,0.000007919704,0.00009303962],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.99896973,0.00021022465,0.00029633788,0.00019863958,0.00019435328,0.00013069756],"domain_scores_gemma":[0.9971188,0.002053471,0.00020890638,0.00043517072,0.00013583015,0.00004782712],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00008154835,0.00012317307,0.00019298795,0.000050362032,0.00017804152,0.00001263748,0.00017272709,0.000060465256,0.019129252],"category_scores_gemma":[0.0034964979,0.000060557737,0.00008674701,0.00058501447,0.00012158923,0.000053653956,0.00016769441,0.00018035377,0.000022619595],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007119254,0.00012691347,0.003603646,0.000042330696,0.00006778258,0.0000078857365,0.0040363516,0.00019904863,0.0000254972,0.0000026312462,0.99166125,0.00015547784],"study_design_scores_gemma":[0.0005934261,0.00030659686,0.7968268,0.0013941819,0.00004264414,0.0000049589785,0.010121372,0.00006659398,0.0000011898511,0.00009934635,0.1904673,0.00007561135],"about_ca_topic_score_codex":0.00019379356,"about_ca_topic_score_gemma":0.00028642808,"teacher_disagreement_score":0.80119395,"about_ca_system_score_codex":0.000021622182,"about_ca_system_score_gemma":0.00018267143,"threshold_uncertainty_score":0.9817674},"labels":[],"label_agreement":null},{"id":"W6921027330","doi":"10.6084/m9.figshare.24792301","title":"Additional file 1 of Adjunct prednisone in community-acquired pneumonia: 180-day outcome of a multicentre, double-blind, randomized, placebo-controlled trial","year":2023,"lang":"en","type":"article","venue":"Open MIND","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Clinical endpoint; Table (database); Subgroup analysis; End point; Life table; Endpoint Determination; Flow chart","score_opus":0.07849607982283137,"score_gpt":0.35663967509279015,"score_spread":0.2781435952699588,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6921027330","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.87918335,0.000018144414,0.000006018625,0.00048063643,0.00045688954,0.015854184,0.077938564,0.00001678858,0.026045429],"genre_scores_gemma":[0.9402906,0.000015696261,0.000506055,0.000117681615,0.00023109195,0.00872054,0.028911702,0.00006258615,0.02114407],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9967268,0.0011166241,0.0012639605,0.000233957,0.00036787416,0.0002907659],"domain_scores_gemma":[0.9898188,0.008872329,0.0005252304,0.00047926832,0.00017298179,0.00013139492],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0020891041,0.00022437058,0.0017652351,0.00044674033,0.00013605128,0.000027054184,0.0003140145,0.00018820459,0.3257723],"category_scores_gemma":[0.004278439,0.00017433276,0.0004278591,0.00066548557,0.0002582876,0.00014506879,0.00021310979,0.00034885088,0.0005229659],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.9626532,0.0013366723,0.00012591726,0.00004730398,0.00037263354,0.000030604067,0.00075336505,0.000057255795,0.0015758608,0.0000032496266,0.0320842,0.0009597434],"study_design_scores_gemma":[0.9636439,0.0004278125,0.00083145173,0.00036773676,0.00026173712,0.00001026572,0.0005424308,0.00066844246,0.00033810805,0.000010109448,0.03274904,0.00014897807],"about_ca_topic_score_codex":0.00016616595,"about_ca_topic_score_gemma":0.0004257908,"teacher_disagreement_score":0.3252493,"about_ca_system_score_codex":0.000059075257,"about_ca_system_score_gemma":0.00034330733,"threshold_uncertainty_score":0.71090835},"labels":[],"label_agreement":null},{"id":"W6921217478","doi":"10.6084/m9.figshare.27118821","title":"Pneumococcal serotypes missing prespecified efficacy threshold in immunogenicity trials: real-world evidence from national immunization programs","year":2024,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Immunogenicity; Serotype; Pneumococcal conjugate vaccine; Pneumococcal disease; Streptococcus pneumoniae; Immunization","score_opus":0.2572829415540022,"score_gpt":0.4146722621617529,"score_spread":0.15738932060775068,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6921217478","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9031071,0.015445538,0.000029608467,0.005456979,0.0014300128,0.0069578895,0.04081181,0.0022311027,0.02452993],"genre_scores_gemma":[0.9767375,0.0000673891,0.000048371137,0.000112785616,0.0006347365,0.00030890634,0.021629805,0.000038966442,0.00042154136],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998262,0.00018278498,0.00056323333,0.00037519418,0.00039066686,0.00022613748],"domain_scores_gemma":[0.9983009,0.0010478758,0.000101047444,0.00026273108,0.00019135942,0.00009606485],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00037744024,0.00018769217,0.00036769363,0.0002852686,0.00011484305,0.00020071112,0.00014300941,0.00014965454,0.017865775],"category_scores_gemma":[0.0031947347,0.00015574481,0.00019666117,0.0008433957,0.000015971942,0.00030274974,0.00007292623,0.00043844452,0.00066777284],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014459561,0.0021886504,0.040011548,0.00248596,0.001249331,0.0008247771,0.0032762694,0.0013292363,0.7590514,0.00056808663,0.07637055,0.11119824],"study_design_scores_gemma":[0.0022696631,0.00031192746,0.7357921,0.04920902,0.00020695751,0.000050102106,0.00006523979,0.009069656,0.01711862,0.00064243714,0.18460354,0.0006607088],"about_ca_topic_score_codex":0.00010308768,"about_ca_topic_score_gemma":0.00016341555,"teacher_disagreement_score":0.74193275,"about_ca_system_score_codex":0.0002715463,"about_ca_system_score_gemma":0.00050397444,"threshold_uncertainty_score":0.98303205},"labels":[],"label_agreement":null},{"id":"W6923193637","doi":"10.1371/journal.pone.0275923.s006","title":"Results of sensitivity analyses of factors associated with pneumococcal non-vaccination among 19,742 Canadian Longitudinal Study on Aging (CLSA) participants aged 65 years and older who had complete data on all variables of interest–Scenarios 1–4.","year":2022,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Longitudinal study; Longitudinal data; Sensitivity (control systems); Ageing; Cohort study","score_opus":0.39451615231091697,"score_gpt":0.39638271094974165,"score_spread":0.001866558638824678,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6923193637","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.89662856,0.000004636346,5.9645555e-7,0.000049813585,0.000021717893,0.00049003796,0.10272077,0.0000139056,0.00006998365],"genre_scores_gemma":[0.9814682,3.9843823e-7,0.0000014667335,0.000046235917,0.0000121381145,0.000021940372,0.01841577,0.00001741395,0.00001643226],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983941,0.00037180274,0.00035902756,0.00033991804,0.000294716,0.00024044066],"domain_scores_gemma":[0.998305,0.0005557733,0.00036683097,0.0004491268,0.00014065021,0.0001825878],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038335865,0.00015786447,0.00045484523,0.0003394194,0.00013442322,0.000012849645,0.00012074624,0.000060671384,0.00081556453],"category_scores_gemma":[0.0017568629,0.00013593654,0.000044320208,0.00039288375,0.00002143816,0.00009200151,0.00014674514,0.00034594562,0.0000011897612],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023225433,0.0012801441,0.97532684,0.00018835004,0.0010697909,0.00027265484,0.0029593362,0.0018879636,0.011725638,9.440733e-7,0.0049261614,0.00012993782],"study_design_scores_gemma":[0.0016842185,0.001084556,0.9925218,0.0010310671,0.00022693178,0.0000027815847,0.0008930976,0.0015043508,0.00086530106,5.578657e-7,0.00006746109,0.000117868854],"about_ca_topic_score_codex":0.012248737,"about_ca_topic_score_gemma":0.11498906,"teacher_disagreement_score":0.10274032,"about_ca_system_score_codex":0.00015259927,"about_ca_system_score_gemma":0.00022585357,"threshold_uncertainty_score":0.9943288},"labels":[],"label_agreement":null},{"id":"W6925706995","doi":"10.17895/ices.pub.19267565.v1","title":"Report of the Study Group on Red-fish Stocks (SGRS)","year":2005,"lang":"en","type":"report","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Pelagic zone; Abundance (ecology); Survey methodology; Biomass (ecology); Survey research; Abundance estimation; Work (physics)","score_opus":0.08488871020323145,"score_gpt":0.3511022146352247,"score_spread":0.2662135044319932,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6925706995","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.009227039,0.0003391239,1.1036514e-7,0.0012372697,0.0022668368,0.005958765,0.19444473,0.00032829773,0.78619784],"genre_scores_gemma":[0.70766395,0.00008173434,0.0000055064006,0.0025064687,0.008407459,0.002470199,0.14164248,0.00036732235,0.13685486],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9972749,0.00007351279,0.00069971144,0.0004682216,0.0012445784,0.00023909926],"domain_scores_gemma":[0.99700385,0.00008151876,0.00076740334,0.0014363556,0.00059024437,0.00012062853],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00020991673,0.00031797957,0.00064676284,0.00017038407,0.00014465049,0.000015603853,0.0002343753,0.00041601527,0.06359416],"category_scores_gemma":[0.0030428988,0.00020236574,0.00046507586,0.00030126586,0.000014647928,0.000031408345,0.0001570932,0.0009883494,0.0002317695],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010405561,0.0007833667,0.005026633,0.00044508386,0.00024919194,0.0009548131,0.00004798767,0.000005506108,0.00005751195,2.028616e-7,0.9896888,0.0027304841],"study_design_scores_gemma":[0.00031413435,0.00046926376,0.20084265,0.0047923913,0.00019668783,0.0011658127,0.000030025498,6.6962707e-7,0.000057844994,5.6356606e-7,0.7919773,0.000152695],"about_ca_topic_score_codex":0.000032320288,"about_ca_topic_score_gemma":0.00013289621,"teacher_disagreement_score":0.6984369,"about_ca_system_score_codex":0.0003067985,"about_ca_system_score_gemma":0.0012272856,"threshold_uncertainty_score":0.9372618},"labels":[],"label_agreement":null},{"id":"W6926184730","doi":"10.18738/t8/ejonhj/9fzoo2","title":"IMGEO2_2018157_DEV_JKB2t_X41a.txt","year":2024,"lang":"en","type":"dataset","venue":"Texas Digital Library (University of Texas)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Process (computing); Identification (biology); Product (mathematics)","score_opus":0.01020411250327254,"score_gpt":0.20747903115034433,"score_spread":0.19727491864707178,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6926184730","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.002219467,0.00020974221,0.0000030266663,0.0010806468,0.000532505,0.00032801335,0.9643314,0.00032305406,0.030972153],"genre_scores_gemma":[0.0013314162,0.0003631262,0.00002853981,0.00043073305,0.00033273082,2.5782657e-7,0.94917506,0.00005550211,0.04828262],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99846995,0.00002506223,0.00025269212,0.00054078916,0.00037026667,0.00034122096],"domain_scores_gemma":[0.9985853,0.000070472925,0.0001755,0.0007770607,0.000047599522,0.00034409016],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000040690615,0.0003907202,0.00068755675,0.0006763752,0.00009703928,0.00012471231,0.000508415,0.0005091344,0.007915301],"category_scores_gemma":[0.000023739716,0.0003982985,0.0005674076,0.000585048,0.00039021487,0.0011274795,0.00064992695,0.00071318477,0.04312381],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000064971704,0.00027023995,0.003267596,0.00083475147,0.00036334895,0.00096182583,0.000007839561,6.1397327e-7,0.000003887357,0.000047487556,0.99362123,0.00055620045],"study_design_scores_gemma":[0.00048237963,0.00038499126,0.004158853,0.0005323307,0.0004728816,0.00018227426,0.000040565392,0.0000057779107,0.000010769832,0.000191569,0.99317133,0.00036629342],"about_ca_topic_score_codex":0.00003278772,"about_ca_topic_score_gemma":0.00000746576,"teacher_disagreement_score":0.035208512,"about_ca_system_score_codex":0.000051386207,"about_ca_system_score_gemma":0.00046999907,"threshold_uncertainty_score":0.9998469},"labels":[],"label_agreement":null},{"id":"W6926310458","doi":"10.21966/xtp4-7p91","title":"Bathymetric Survey - Northwest Calvert Island","year":2020,"lang":"en","type":"dataset","venue":"Hakai Institute","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Bathymetry; Python (programming language); Echo sounding; Bathymetric chart; Hydrographic survey; Sonar; Hydrography","score_opus":0.04215800763760381,"score_gpt":0.2978003796988414,"score_spread":0.2556423720612376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6926310458","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0006310127,0.00014719578,0.000034947727,0.0003372546,0.0029182564,0.00042352785,0.9947257,0.00009949075,0.0006826026],"genre_scores_gemma":[0.0007822208,0.000748524,0.000009136875,0.0031164777,0.0009886073,0.000036992147,0.9938711,0.00002978929,0.00041718656],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981896,0.00008078279,0.0004308118,0.0005337751,0.00041615777,0.0003488655],"domain_scores_gemma":[0.99847734,0.000078950696,0.00015775688,0.00072107837,0.00014545947,0.00041942665],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00017611508,0.000409563,0.00073370145,0.0004669437,0.00021440822,0.00005395361,0.00023716064,0.0004892972,0.0003729282],"category_scores_gemma":[0.0006276356,0.00034109416,0.00023835569,0.0011309098,0.00018047313,0.000115254275,0.00012077013,0.0009895896,0.0041799475],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003147316,0.00017242698,0.0066140806,0.00023004136,0.00020398248,0.0007710224,0.0000068098752,0.0000056981694,0.00002598841,0.0000024183869,0.9917031,0.00023297],"study_design_scores_gemma":[0.00075961376,0.00024011779,0.05387137,0.00011434457,0.00034515577,0.0002190147,0.0000015192084,0.000005091058,0.0000076030638,0.0000011878129,0.94410807,0.00032688281],"about_ca_topic_score_codex":0.0043893983,"about_ca_topic_score_gemma":0.025711557,"teacher_disagreement_score":0.04759499,"about_ca_system_score_codex":0.00012083986,"about_ca_system_score_gemma":0.0008239384,"threshold_uncertainty_score":0.9999041},"labels":[],"label_agreement":null},{"id":"W6926385129","doi":"10.25318/1010003801-eng","title":"Reconciliation of public sector employment and public administration employment","year":2019,"lang":"en","type":"dataset","venue":"Statistics Canada Dissemination","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Public sector; New public management; Public service; Tertiary sector of the economy; Table (database)","score_opus":0.029564838932316678,"score_gpt":0.3053791869124167,"score_spread":0.27581434798010007,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6926385129","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.005400554,0.00008180811,0.00047651216,0.0011785177,0.0007189769,0.00066943973,0.9914279,0.0000136186245,0.000032651995],"genre_scores_gemma":[0.03866921,0.00018638339,0.00007908953,0.00017789386,0.00009294257,0.000064566026,0.9602578,0.000022111843,0.00045000066],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.998044,0.0000861858,0.0005797332,0.0003346611,0.0007043183,0.00025111187],"domain_scores_gemma":[0.9980867,0.00021844891,0.00050417514,0.00037161246,0.00057907164,0.00023997917],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002130395,0.0002524048,0.00039901776,0.00026776292,0.00010251757,0.000056686884,0.000080355945,0.00020820287,0.00031052972],"category_scores_gemma":[0.000693427,0.00024910012,0.000033061628,0.00022478968,0.000060045575,0.000094655385,0.00003087126,0.0002425794,0.000005237227],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010364344,0.0001402552,0.0018377884,0.0005061222,0.00010091767,0.000016815078,0.000012060818,4.0700252e-7,0.00040516365,0.00020595443,0.99332947,0.0034346927],"study_design_scores_gemma":[0.00041126818,0.0005762753,0.045605294,0.0001931959,0.00027718855,0.000040945095,0.000117295516,0.00004795749,0.00023054442,0.00002602093,0.9521954,0.00027862095],"about_ca_topic_score_codex":0.010452496,"about_ca_topic_score_gemma":0.4571821,"teacher_disagreement_score":0.4467296,"about_ca_system_score_codex":0.0006817101,"about_ca_system_score_gemma":0.0025523133,"threshold_uncertainty_score":0.9999961},"labels":[],"label_agreement":null},{"id":"W6926408792","doi":"10.25384/sage.18832014","title":"sj-docx-3-cjk-10.1177_20543581211067090 – Supplemental material for Effects of Medium Cut-Off Versus High-Flux Hemodialysis Membranes on Biomarkers: A Systematic Review and Meta-Analysis","year":2022,"lang":"en","type":"article","venue":"Sage Journals Data","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Hemodialysis; Membrane; Kidney disease; Artificial kidney; Kidney; Systematic review","score_opus":0.06396703305099942,"score_gpt":0.34662256490221344,"score_spread":0.282655531851214,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6926408792","genre_codex":"review","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.06377652,0.6181483,0.00070014317,0.041915543,0.004359222,0.022961522,0.24749112,0.00030286712,0.00034471825],"genre_scores_gemma":[0.8755432,0.05756589,0.0010243786,0.009546872,0.001160263,0.0051614223,0.046359397,0.0003302084,0.003308409],"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99638337,0.0007714621,0.0011613946,0.00053941907,0.0008036346,0.00034071231],"domain_scores_gemma":[0.9965294,0.0008483841,0.00079597597,0.0014720066,0.00012111215,0.0002331335],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0022696694,0.00034177478,0.0029566116,0.00061205204,0.00038130343,0.00007034135,0.0005279864,0.00006907131,0.05616268],"category_scores_gemma":[0.0006528953,0.00023955356,0.0009706944,0.00093329966,0.00007849404,0.0002275352,0.00043962058,0.00022001567,0.000012382165],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012641369,0.0013748968,0.00013772411,0.21851678,0.6651692,0.0003606613,0.00021208562,0.000027951273,0.040823583,0.000009881992,0.07177678,0.00032637137],"study_design_scores_gemma":[0.0037645784,0.0010604989,0.00011113303,0.0017430956,0.97730035,0.00016098842,0.00020888733,0.0000837741,0.0055368333,0.000014226097,0.009699814,0.00031582877],"about_ca_topic_score_codex":0.000051567582,"about_ca_topic_score_gemma":0.00003968635,"teacher_disagreement_score":0.8117666,"about_ca_system_score_codex":0.000099866345,"about_ca_system_score_gemma":0.00010932679,"threshold_uncertainty_score":0.9768711},"labels":[],"label_agreement":null},{"id":"W6926483154","doi":"10.24546/00422756","title":"The Reputation Politics of the Norm Cascade (III)","year":2006,"lang":"en","type":"article","venue":"Institutional Repositories DataBase (IRDB)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Commit; Foreign policy; Regional policy; Developing country; Public policy","score_opus":0.010018828923846132,"score_gpt":0.25836402440292255,"score_spread":0.2483451954790764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6926483154","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.966836,0.00048262844,0.00082957855,0.0038098292,0.0040010912,0.00048365942,0.00027727865,0.000087160726,0.02319281],"genre_scores_gemma":[0.9961223,0.00002479407,0.00008877892,0.00024158886,0.0012244703,0.000027681663,0.000115482195,0.000008908124,0.0021459837],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986707,0.00004509797,0.00041154856,0.00017534985,0.00050177594,0.00019555714],"domain_scores_gemma":[0.9987784,0.00015384785,0.00016547035,0.0005283143,0.00031101992,0.000062932646],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00016481784,0.00011996168,0.00013513833,0.000045282868,0.0013272105,0.000040885567,0.00013184095,0.000070645685,0.0000059579256],"category_scores_gemma":[0.00033117644,0.00006731275,0.00012215291,0.00029905103,0.0006641305,0.0001901897,0.00008044303,0.00021964988,0.00000900707],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011142269,0.00044083054,0.09292785,0.00014552847,0.00017595742,0.00015498606,0.00015862643,0.0008361905,0.16918924,0.7221051,0.013369285,0.00038498535],"study_design_scores_gemma":[0.0008424584,0.00008535846,0.24046943,0.00022590665,0.00019526764,0.0015260226,0.00012433222,0.00016082823,0.06974668,0.0010980099,0.68535566,0.00017001605],"about_ca_topic_score_codex":0.0011105164,"about_ca_topic_score_gemma":0.00020951987,"teacher_disagreement_score":0.7210071,"about_ca_system_score_codex":0.00018534828,"about_ca_system_score_gemma":0.0007021864,"threshold_uncertainty_score":0.99997294},"labels":[],"label_agreement":null},{"id":"W6926515600","doi":"10.25377/sussex.22887434","title":"Humayun Kabir (1906-1969)","year":2023,"lang":"en","type":"other","venue":"University of Sussex","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Arts and Humanities Research Council","keywords":"Commission; Politics; Prime minister; Quarter (Canadian coin); Statement (logic); Biography","score_opus":0.014340173194891299,"score_gpt":0.22695134113257348,"score_spread":0.21261116793768217,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6926515600","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0014923502,0.00007397465,0.000031787615,0.0004562048,0.0003314798,0.0001986779,0.00005400437,0.00064600405,0.99671555],"genre_scores_gemma":[0.002569401,0.00031156797,0.000041043077,0.000071884795,0.00014919278,9.781631e-8,0.000015096068,0.00020576833,0.996636],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9994888,0.000014300968,0.00006249412,0.00017021922,0.00013580573,0.00012843765],"domain_scores_gemma":[0.9995159,0.00001999674,0.00008706152,0.00025354966,0.00003450966,0.00008900988],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00003390086,0.00011448667,0.00027654885,0.0003594414,0.00005616822,0.0000018525968,0.00009066861,0.00024786114,0.0035449858],"category_scores_gemma":[0.000014093109,0.00012091539,0.00014213934,0.00018471494,0.00013759501,0.000016112215,0.000044246328,0.00017192573,0.00091965677],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016447379,0.00011344086,0.006196814,0.00024294903,0.00031697768,0.0003759442,0.00016788495,0.0000010214043,0.0009400508,0.00035808733,0.98979056,0.0014798213],"study_design_scores_gemma":[0.00051713246,0.000086412525,0.0048191845,0.00024315684,0.00016909117,0.000009735639,0.00034713754,0.0000018376444,0.00002033194,0.000007796223,0.9936711,0.00010707495],"about_ca_topic_score_codex":0.0006243689,"about_ca_topic_score_gemma":0.00073781295,"teacher_disagreement_score":0.0038805476,"about_ca_system_score_codex":0.000055206092,"about_ca_system_score_gemma":0.00010096073,"threshold_uncertainty_score":0.99985826},"labels":[],"label_agreement":null},{"id":"W6926542820","doi":"10.25316/ir-9790","title":"Nanaimo Free Press [Thursday, February 9, 1899]","year":2019,"lang":"en","type":"other","venue":"VIUSpace (Vancouver Island University Library)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"","score_opus":0.008181622280904764,"score_gpt":0.19690259091547002,"score_spread":0.18872096863456525,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6926542820","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00009212979,0.00045834322,0.000090235604,0.0013426684,0.0019996918,0.0007495518,0.00048494947,0.0008159983,0.99396646],"genre_scores_gemma":[0.00045423923,0.00095832377,0.0001458823,0.00064513774,0.000615341,0.0000015816486,0.000024821602,0.0004030943,0.9967516],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99836534,0.000089547066,0.00015011943,0.0006101105,0.00034443394,0.00044045495],"domain_scores_gemma":[0.9982298,0.000050534287,0.00021371427,0.0011719378,0.000028050437,0.0003059649],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000022665397,0.00047638142,0.00067571574,0.0005963261,0.00013578752,0.000038589627,0.00047467492,0.0007151147,0.0022595276],"category_scores_gemma":[0.00001440328,0.00043855156,0.00033334698,0.00037585173,0.00015397274,0.00035562358,0.00038267722,0.0006234895,0.00047989094],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008040419,0.000159324,0.00060993666,0.00028281152,0.00036876986,0.0004691061,0.000085450454,0.000004422365,0.000048885784,0.00027788087,0.99747044,0.00014258947],"study_design_scores_gemma":[0.0025495787,0.00022344495,0.00053999305,0.0004673084,0.0003771713,0.00001582905,0.00017276364,0.000010679292,0.00007587673,0.000019592402,0.99504155,0.0005062267],"about_ca_topic_score_codex":0.0011218378,"about_ca_topic_score_gemma":0.15656826,"teacher_disagreement_score":0.15544643,"about_ca_system_score_codex":0.00008255927,"about_ca_system_score_gemma":0.00039233008,"threshold_uncertainty_score":0.99980664},"labels":[],"label_agreement":null},{"id":"W6926548956","doi":"10.25384/sage.21841383.v1","title":"sj-docx-1-his-10.1177_11786329221144889 – Supplemental material for The Financial Risks of Unpaid Caregiving During the COVID-19 Pandemic: Results From a Self-reported Survey in a Canadian Jurisdiction","year":2023,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Jurisdiction; Current Population Survey; Financial services; Financial risk; Survey data collection","score_opus":0.13430458279487745,"score_gpt":0.353898970209808,"score_spread":0.21959438741493054,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6926548956","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.485269,0.000020667054,5.599259e-7,0.00065515836,0.00025977974,0.0008912663,0.51274097,0.00010769525,0.000054894306],"genre_scores_gemma":[0.8321653,0.000009259295,0.0000022173194,0.00027498516,0.00035876082,0.00049372745,0.16652353,0.000025595697,0.00014664032],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9982959,0.00016220684,0.00052107713,0.000325194,0.00023280206,0.00046280964],"domain_scores_gemma":[0.99811906,0.00088502234,0.00022946407,0.00039536177,0.00013797027,0.00023312376],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00058482826,0.00017827564,0.00025757132,0.00022533463,0.00048422033,0.000037281658,0.00017345851,0.00017327709,0.021102356],"category_scores_gemma":[0.0043959925,0.0001219992,0.00012509064,0.00058896333,0.000022504022,0.000066595196,0.000072395764,0.00023843137,0.00008154565],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009840293,0.000122016834,0.44191852,0.00044909105,0.0004283995,0.00029245793,0.0067431265,0.00069667766,0.006551063,0.0000019167712,0.54138476,0.0004279166],"study_design_scores_gemma":[0.0021667993,0.00007647243,0.65189064,0.00017486353,0.00006838341,0.00004247141,0.0002173995,0.00045803198,0.00034793868,0.000005299188,0.34442547,0.00012626458],"about_ca_topic_score_codex":0.23620346,"about_ca_topic_score_gemma":0.71045107,"teacher_disagreement_score":0.47424757,"about_ca_system_score_codex":0.00055906933,"about_ca_system_score_gemma":0.0014113643,"threshold_uncertainty_score":0.9797925},"labels":[],"label_agreement":null},{"id":"W6926569318","doi":"10.25549/webster-c100-11307","title":"Los Angeles County District Attorney's Office Emergency Plan, 1992-06","year":2021,"lang":"en","type":"dataset","venue":"University of Southern California Digital Library","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Commission; Newspaper; Royal Commission; Economic Justice; Work (physics); Variety (cybernetics)","score_opus":0.01017898220507252,"score_gpt":0.1871979369014579,"score_spread":0.17701895469638537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6926569318","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004619143,0.00027291,0.000013112027,0.0001545977,0.000102260965,0.00020170781,0.9916511,0.00011846649,0.0028666954],"genre_scores_gemma":[0.0006694852,0.0002790362,0.000009165682,0.0001420301,0.00024464546,3.8064312e-7,0.9970633,0.0000376581,0.001554321],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99854857,0.00004281826,0.00031133878,0.00043015866,0.00037989358,0.00028723598],"domain_scores_gemma":[0.9987422,0.00005455133,0.00028104242,0.00054686033,0.00006789687,0.0003074009],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0000307107,0.00035349024,0.00056974805,0.00021747068,0.00017125811,0.00004799604,0.0003185087,0.00040978644,0.004264423],"category_scores_gemma":[0.000039132457,0.0003453037,0.00042819843,0.00037444313,0.0001759533,0.00020793076,0.0002893424,0.0004643701,0.0028910623],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010189676,0.0004120913,0.012065216,0.0005042311,0.00023582841,0.00058488816,0.000007870688,0.0000018563547,0.000025238824,0.0000013041941,0.98592955,0.00013003599],"study_design_scores_gemma":[0.00047247333,0.000067283836,0.00042418402,0.0002521584,0.00033001893,0.000060048696,0.00058751047,0.0000031357995,0.000007800945,0.0000074881477,0.9974625,0.00032536383],"about_ca_topic_score_codex":0.00007902579,"about_ca_topic_score_gemma":0.000027308079,"teacher_disagreement_score":0.011641032,"about_ca_system_score_codex":0.000057628193,"about_ca_system_score_gemma":0.00042599393,"threshold_uncertainty_score":0.9998999},"labels":[],"label_agreement":null},{"id":"W6926610643","doi":"10.25316/ir-10535","title":"Nanaimo Free Press [Saturday, July 18, 1896]","year":2019,"lang":"en","type":"other","venue":"VIURRSpace (Vancouver Island University)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"","score_opus":0.01255030397092607,"score_gpt":0.22144204955462604,"score_spread":0.20889174558369997,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6926610643","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000005004138,0.0003465877,0.0002204614,0.00033215032,0.002733421,0.00071851147,0.00034386836,0.00042631984,0.9948737],"genre_scores_gemma":[0.0003083177,0.0006585059,0.00006940582,0.0003092563,0.0006168038,0.0000017261258,0.0000023158614,0.00031289834,0.9977208],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983131,0.0000757702,0.00013862787,0.0006214883,0.00038714343,0.00046383555],"domain_scores_gemma":[0.9981735,0.000046370926,0.00023611127,0.0011835849,0.00009584028,0.00026463042],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000048237172,0.00047882757,0.0006881747,0.00088412926,0.00013131149,0.000027524904,0.00039720873,0.00073776074,0.0009613729],"category_scores_gemma":[0.00003658879,0.00043997448,0.00032527104,0.00047413708,0.00014799152,0.000100913196,0.0002189005,0.000696521,0.00066783355],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006175754,0.00013427048,0.000022046717,0.0002677714,0.00038799166,0.00049254234,0.00006817753,0.0000090055355,0.00014785447,0.00020996423,0.99802005,0.000178573],"study_design_scores_gemma":[0.0029782266,0.00022035044,0.000026007905,0.00046978364,0.00056576275,0.000025923655,0.0001314264,0.000009445792,0.000045390734,0.000008602074,0.9950265,0.00049256365],"about_ca_topic_score_codex":0.0005112245,"about_ca_topic_score_gemma":0.0015299452,"teacher_disagreement_score":0.0029935287,"about_ca_system_score_codex":0.00020862579,"about_ca_system_score_gemma":0.0003348834,"threshold_uncertainty_score":0.9999519},"labels":[],"label_agreement":null},{"id":"W6926703621","doi":"10.25384/sage.11298374","title":"Supplemental Material, MITO-NAC_Physical_activity_Supplementary_Material - Physical Activity as a Predictor of Clinical Trial Outcomes in Bipolar Depression: A Subanalysis of a Mitochondrial-Enhancing Nutraceutical Randomized Controlled Trial","year":2019,"lang":"en","type":"article","venue":"Sage Journals Data","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Physical activity; Clinical trial; Randomized controlled trial; Nutraceutical","score_opus":0.050194235522896494,"score_gpt":0.40578660255394866,"score_spread":0.3555923670310522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6926703621","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98478127,0.00010748824,0.00012141487,0.0006909158,0.0028538704,0.008183347,0.003198818,0.000026510037,0.00003638432],"genre_scores_gemma":[0.9967144,0.00026174117,0.00015548654,0.00006313433,0.0021792636,0.00024808053,0.00029168386,0.000035227622,0.00005096248],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.99213755,0.0024919256,0.0029779228,0.00072530063,0.0011789295,0.0004883529],"domain_scores_gemma":[0.9937014,0.0029203477,0.0016603931,0.0012744904,0.0001156094,0.000327739],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0034014774,0.000431636,0.006511595,0.000382163,0.000079469704,0.00006724788,0.0005332657,0.00026807125,0.0054971655],"category_scores_gemma":[0.0027767688,0.0002844853,0.0017192104,0.00034121887,0.00028645774,0.00069244776,0.00048137398,0.00072951935,0.000018761071],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.718625,0.008151642,0.0077256374,0.0000817345,0.0019059551,0.000025784948,0.000066253284,0.0000018114114,0.26241365,0.0000024224266,0.00006240834,0.0009376656],"study_design_scores_gemma":[0.96489733,0.002477969,0.0029885876,0.00046021253,0.0027535046,0.000017838427,0.00009079913,0.0008373021,0.024893548,0.00007977887,0.00026563506,0.00023751878],"about_ca_topic_score_codex":0.00043139362,"about_ca_topic_score_gemma":0.000082847444,"teacher_disagreement_score":0.24627228,"about_ca_system_score_codex":0.000071055154,"about_ca_system_score_gemma":0.0005132497,"threshold_uncertainty_score":0.9999607},"labels":[],"label_agreement":null},{"id":"W6926725652","doi":"10.25384/sage.24602719","title":"sj-docx-1-cjn-10.1177_08445621231215845 - Supplemental material for Experiences of Providers and Immigrants/Refugees with Health Care: A Meta-Synthesis of the Latin American Context","year":2023,"lang":"en","type":"article","venue":"Sage Journals Data","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Latin Americans; Context (archaeology); Public health; Government (linguistics); Health care","score_opus":0.05778914508200471,"score_gpt":0.3491024687079267,"score_spread":0.291313323625922,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6926725652","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98144287,0.0013973622,0.000031498952,0.0052906405,0.00013223401,0.0008290608,0.010838925,0.000022806453,0.000014592764],"genre_scores_gemma":[0.9985518,0.00035858763,0.00020434453,0.0003541865,0.00007679989,0.00022639518,0.00013781131,0.00001982568,0.00007024277],"study_design_codex":"design_other","study_design_gemma":"qualitative","domain_scores_codex":[0.9985853,0.00013145442,0.00048772016,0.00023896832,0.00030612762,0.0002504276],"domain_scores_gemma":[0.9986031,0.00017719374,0.0005131422,0.00051730144,0.00007843586,0.00011085013],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00046317317,0.00015164555,0.00062493025,0.00012587379,0.00021429654,0.000032039898,0.00026470248,0.000027446209,0.0013403549],"category_scores_gemma":[0.00016211276,0.00008056868,0.00011315342,0.0003464134,0.00040881918,0.00016712087,0.0001449131,0.00009377354,0.0000010322433],"study_design_candidate":"qualitative","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0035114828,0.001181626,0.0963205,0.0032655469,0.013056728,0.0000837136,0.14013103,0.00001716278,0.22629866,0.000031576474,0.13943815,0.37666383],"study_design_scores_gemma":[0.006273023,0.0056001213,0.07537022,0.0022431663,0.005187018,0.0003085793,0.5399984,0.00013823033,0.19176595,0.00002784371,0.17240055,0.0006868845],"about_ca_topic_score_codex":0.00077024486,"about_ca_topic_score_gemma":0.000868628,"teacher_disagreement_score":0.3998674,"about_ca_system_score_codex":0.000023981172,"about_ca_system_score_gemma":0.00026744616,"threshold_uncertainty_score":0.9995726},"labels":[],"label_agreement":null},{"id":"W6926892833","doi":"10.25549/webster-c100-10311","title":"Prevention and Control of Urban Disorders, 1980-08","year":2021,"lang":"en","type":"dataset","venue":"University of Southern California Digital Library","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Commission; Newspaper; Control (management); Economic Justice; Variety (cybernetics); Criminal justice","score_opus":0.004387808446621554,"score_gpt":0.17208523890289718,"score_spread":0.1676974304562756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6926892833","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0057773152,0.0002968026,0.00006138668,0.00024426854,0.000026243146,0.00018953101,0.99289674,0.000028314898,0.00047939958],"genre_scores_gemma":[0.012034559,0.00024200496,0.000012651019,0.00008190499,0.00005759291,2.2871545e-7,0.98658544,0.000017891416,0.00096773845],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9993129,0.00003284296,0.00017770712,0.00020502835,0.00015623917,0.00011529339],"domain_scores_gemma":[0.9993677,0.000042570744,0.00019874742,0.00024026961,0.00003133008,0.00011936043],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000022927768,0.00015756933,0.0004049171,0.00015183577,0.000057464895,0.000018714962,0.000097350894,0.00021164236,0.0005928243],"category_scores_gemma":[0.000020147554,0.00015520226,0.00021947731,0.00012678362,0.00023536007,0.00012153714,0.00011168237,0.0001891456,0.0002889695],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020088724,0.000542306,0.03824565,0.0008612283,0.00040580344,0.00007407825,0.00004093908,0.0000012211589,0.00008597243,0.0000041259127,0.95838815,0.0011496093],"study_design_scores_gemma":[0.0010848329,0.00015532077,0.00021533838,0.0003007301,0.0003075553,0.000014993011,0.00056170725,0.000004112963,0.000010938847,0.000053074116,0.9971627,0.00012870053],"about_ca_topic_score_codex":0.000018188894,"about_ca_topic_score_gemma":0.000006478117,"teacher_disagreement_score":0.038774516,"about_ca_system_score_codex":0.0000109880775,"about_ca_system_score_gemma":0.00020418604,"threshold_uncertainty_score":0.6491011},"labels":[],"label_agreement":null},{"id":"W6927001509","doi":"10.25949/21522735","title":"Right-wing extremist threats to Australia in the context of the Christchurch terrorist attack","year":2022,"lang":"en","type":"dissertation","venue":"Macquarie University","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Terrorism; Mainstream; Context (archaeology); Slowness; Action (physics); Project commissioning","score_opus":0.03777939934008842,"score_gpt":0.3149682161946688,"score_spread":0.2771888168545804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6927001509","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9659314,0.000038762424,0.0000018798244,0.0013038971,0.00057894795,0.0006229595,0.00007407949,0.000019792215,0.031428274],"genre_scores_gemma":[0.9458605,0.000009263903,0.0000025357883,0.00028707375,0.00005027754,0.0000025180066,0.00013643374,0.000011918337,0.05363945],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988372,0.00016566973,0.00019308602,0.00026767398,0.00034430236,0.00019210036],"domain_scores_gemma":[0.9991476,0.00007602524,0.00014638051,0.00048820194,0.00007618055,0.000065601955],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00017647984,0.00018376975,0.00030050534,0.00017798407,0.00044036494,0.000012456634,0.0004004979,0.00016092854,0.0010692606],"category_scores_gemma":[0.000030996038,0.00012583136,0.00022618029,0.00058982166,0.00007869851,0.000036898036,0.000057084566,0.0006450622,0.000014151094],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004115925,0.0034368485,0.6034245,0.0026002855,0.0013465731,0.0033896698,0.15087736,0.000407744,0.07597603,0.007700228,0.13999046,0.0067343954],"study_design_scores_gemma":[0.0010867409,0.00024667775,0.42918354,0.00024658695,0.00038438247,0.00002662834,0.04741343,0.000009759481,0.00067120284,0.000028912473,0.52044,0.0002621523],"about_ca_topic_score_codex":0.0019715035,"about_ca_topic_score_gemma":0.0056602303,"teacher_disagreement_score":0.3804495,"about_ca_system_score_codex":0.0003304797,"about_ca_system_score_gemma":0.00021053382,"threshold_uncertainty_score":0.9998439},"labels":[],"label_agreement":null},{"id":"W6927094825","doi":"10.25545/mmnbnm/uu1ild","title":"082105-acc.tab","year":2025,"lang":"nl","type":"dataset","venue":"UNB Dataverse","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of New Brunswick","funders":"","keywords":"Process (computing); Identification (biology); Product (mathematics)","score_opus":0.014094411886679061,"score_gpt":0.29345514331567707,"score_spread":0.27936073142899803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6927094825","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00015970277,0.00015469312,0.000041364678,0.0005427782,0.0077084634,0.0008719806,0.98059916,0.00014419414,0.009777687],"genre_scores_gemma":[0.00007092512,0.0030587455,0.000028594617,0.0052157263,0.002435742,0.00006052705,0.9510735,0.000034315075,0.038021885],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99616194,0.00022846682,0.0009016346,0.0011671027,0.0006224461,0.00091839477],"domain_scores_gemma":[0.99496555,0.00027931388,0.000357773,0.0036230367,0.00020212191,0.00057217287],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0003738964,0.0008532218,0.0011406324,0.0008471123,0.0005378647,0.00012399752,0.0009077256,0.0010289887,0.0222534],"category_scores_gemma":[0.00092623476,0.0007879525,0.00043346404,0.0009290231,0.00038643592,0.0002587735,0.00085425074,0.001822481,0.06630161],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007619317,0.0006777664,0.00029323416,0.0010192759,0.00063722755,0.0010200436,0.000024690356,0.000005738092,0.00047877774,0.000102116974,0.9948825,0.00078238937],"study_design_scores_gemma":[0.0020953189,0.0003878169,0.00029777968,0.0013048224,0.0021298677,0.00012964786,0.00025807542,0.00002795147,0.00008275066,0.000011963919,0.99260074,0.0006732474],"about_ca_topic_score_codex":0.00047284033,"about_ca_topic_score_gemma":0.00010509119,"teacher_disagreement_score":0.04404821,"about_ca_system_score_codex":0.00034922315,"about_ca_system_score_gemma":0.0015122483,"threshold_uncertainty_score":0.9994571},"labels":[],"label_agreement":null},{"id":"W6927460014","doi":"10.3389/fmicb.2024.1466927.s003","title":"Table_3_Proteomics fingerprinting reveals importance of iron and oxidative stress in Streptomyces scabies–Solanum tuberosum interactions.docx","year":2024,"lang":"en","type":"dataset","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Siderophore; Bacteria; Elicitor; Solanum tuberosum; Nitrite; Secondary metabolite; Catalase","score_opus":0.0235197911587744,"score_gpt":0.30613796380470315,"score_spread":0.28261817264592876,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6927460014","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.021484181,0.00063732837,7.192984e-8,0.00010716229,0.00017728002,0.00059786456,0.97679895,0.000039833758,0.00015733865],"genre_scores_gemma":[0.0047071567,0.000100003075,0.000022088912,0.00011214209,0.00021727753,0.0002978683,0.9943533,0.000031046013,0.00015911704],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983941,0.000052674073,0.0005960676,0.00048735444,0.00020197612,0.00026787785],"domain_scores_gemma":[0.998722,0.0002097563,0.00038947514,0.00045099345,0.0001272466,0.00010049934],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00008685686,0.00031374226,0.00057720806,0.0003809357,0.00006711392,0.00006119054,0.00014373405,0.0002826764,0.020754289],"category_scores_gemma":[0.001055436,0.00028489338,0.00010875741,0.00034014782,0.000028375542,0.00015541434,0.0002614212,0.001000073,0.0005455976],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001392232,0.000097918695,0.0059707235,0.0053771595,0.00007029294,0.00010685688,0.000047807815,0.0000069012162,0.0016472102,6.7847765e-7,0.9865058,0.0001547388],"study_design_scores_gemma":[0.00038724483,0.0001665713,0.008870405,0.03381469,0.00016328187,0.00011802345,0.00024803935,0.000040196584,0.0023812356,0.000024532965,0.95339596,0.00038981548],"about_ca_topic_score_codex":0.00006087024,"about_ca_topic_score_gemma":0.000518448,"teacher_disagreement_score":0.03310983,"about_ca_system_score_codex":0.00012286694,"about_ca_system_score_gemma":0.00018979958,"threshold_uncertainty_score":0.9999603},"labels":[],"label_agreement":null},{"id":"W6929866702","doi":"10.5281/zenodo.10819235","title":"Data from: ChatGPT performance on radiation technologist and therapist entry to practice exams","year":2024,"lang":"en","type":"dataset","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Horizon Health Network; Dalhousie University","funders":"","keywords":"Multiple choice; Radiological weapon; Data collection; Table (database); Radiation Therapist; Medical physicist","score_opus":0.051473326871483184,"score_gpt":0.3121648608576608,"score_spread":0.2606915339861776,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929866702","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0011864897,0.00039020588,0.000041216143,0.0055763056,0.0003641849,0.00084268,0.9808264,0.00072033505,0.010052189],"genre_scores_gemma":[0.001991544,0.0034337083,0.000027946275,0.0016375827,0.00049461593,2.0522127e-7,0.99116457,0.00067835074,0.0005714668],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981854,0.0001689672,0.0002515928,0.00072924857,0.00040227495,0.00026250264],"domain_scores_gemma":[0.99802136,0.00005723206,0.00011722373,0.0014096964,0.0001956194,0.00019884616],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0004991429,0.00022195904,0.00022468778,0.0004375463,0.0010422906,0.00057756796,0.00080286927,0.00021781489,0.0034354087],"category_scores_gemma":[0.0014816205,0.0001992635,0.00002831217,0.0005417336,0.00014175773,0.0002320082,0.0015069519,0.0008688737,0.04236315],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008476817,0.00016835699,0.0000012157886,0.00017502633,0.00012118928,0.000052465624,0.00007940136,0.0000025255845,0.00057357573,0.0000199858,0.93893343,0.05978807],"study_design_scores_gemma":[0.00035730653,0.0007920488,0.00022017269,0.00026002328,0.00014527715,0.00023357155,0.00012009961,0.00007578254,0.00007180676,0.0000055936234,0.9975241,0.00019422744],"about_ca_topic_score_codex":0.00002909778,"about_ca_topic_score_gemma":0.000001289057,"teacher_disagreement_score":0.05959384,"about_ca_system_score_codex":0.00017946206,"about_ca_system_score_gemma":0.000013405763,"threshold_uncertainty_score":0.99747556},"labels":[],"label_agreement":null},{"id":"W6930656686","doi":"10.5281/zenodo.15556639","title":"Greater Calgary Metropolitan Region Ecological Connectivity Spatial Products","year":2025,"lang":"en","type":"dataset","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Metropolitan area; Wildlife; Ecological network; Land use; Landscape connectivity; Spatial ecology; Product (mathematics); Land cover","score_opus":0.04045731914220892,"score_gpt":0.27573579818948785,"score_spread":0.23527847904727894,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930656686","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0027345545,0.00009060614,0.0005216171,0.005443485,0.0010444197,0.0024202373,0.9371584,0.001409639,0.04917701],"genre_scores_gemma":[0.010873135,0.00015332644,0.000015067451,0.0008345831,0.00065858033,2.6618952e-7,0.98510075,0.00048270187,0.0018815781],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99738294,0.00062552514,0.00035163295,0.000767861,0.00040202177,0.00047004595],"domain_scores_gemma":[0.99775565,0.000040707822,0.00015862248,0.0009784679,0.0008066706,0.00025989846],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00042294874,0.0003039667,0.00045281817,0.00056953944,0.0018578382,0.00028823916,0.00056666584,0.00035323596,0.0060551963],"category_scores_gemma":[0.0023506023,0.00026610374,0.0001336541,0.0006794359,0.0003142645,0.000097133474,0.0010703,0.0009659856,0.0018955903],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010456828,0.00044821095,0.000009582244,0.00037858146,0.00014510783,0.00025031605,0.000023574206,7.620399e-7,0.0003935666,0.00014216412,0.9936228,0.00448081],"study_design_scores_gemma":[0.0006824528,0.0008654771,0.0016028048,0.00011058927,0.0001949754,0.00070368726,0.000035661124,0.00001145043,0.00013855298,0.00002075468,0.99538857,0.0002450331],"about_ca_topic_score_codex":0.00015957371,"about_ca_topic_score_gemma":0.0000034171999,"teacher_disagreement_score":0.04794233,"about_ca_system_score_codex":0.00076060096,"about_ca_system_score_gemma":0.000036235215,"threshold_uncertainty_score":0.99997914},"labels":[],"label_agreement":null},{"id":"W6931414693","doi":"10.5281/zenodo.4228623","title":"[FREE] [DOWNLOAD] Making Work Work for the Highly Sensitive Person Full-Acces","year":2020,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Work (physics); Download; Memory work; Virtual work; Work function","score_opus":0.06619787653320101,"score_gpt":0.2696337182398033,"score_spread":0.20343584170660228,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931414693","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.34694126,0.0011692896,0.068614535,0.33393928,0.001696353,0.00983626,0.0021104296,0.008012263,0.22768031],"genre_scores_gemma":[0.9948104,0.000038977814,0.00014117551,0.003059781,0.00060810446,2.5655416e-7,0.00026736938,0.0006298353,0.00044412073],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986575,0.00016558073,0.0001888869,0.00035626275,0.00029195266,0.0003397738],"domain_scores_gemma":[0.99879473,0.00009376642,0.00009241992,0.00038179028,0.00044143014,0.00019585753],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00031917103,0.00015188757,0.0001801215,0.000100270554,0.0023277397,0.000383262,0.00045473495,0.000071643815,0.0017927544],"category_scores_gemma":[0.0011600351,0.00011710113,0.00011746715,0.0008540234,0.00017353838,0.00011736562,0.00039843578,0.00034163604,0.0023926222],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012896667,0.00020230057,0.00013869183,0.00020887594,0.00042306763,0.00008290852,0.008241077,0.0002502502,0.038732696,0.0012201216,0.8522425,0.09696779],"study_design_scores_gemma":[0.0008016687,0.0005018202,0.0031685205,0.000073202405,0.00009288757,0.00009350792,0.001277117,0.00020190637,0.0004963821,0.000009839409,0.9931323,0.00015085572],"about_ca_topic_score_codex":0.0000020398547,"about_ca_topic_score_gemma":1.4218723e-7,"teacher_disagreement_score":0.6478691,"about_ca_system_score_codex":0.00009023989,"about_ca_system_score_gemma":0.0000075743014,"threshold_uncertainty_score":0.99911976},"labels":[],"label_agreement":null},{"id":"W6932044748","doi":"10.5683/sp3/soupzo","title":"Mapping for Access: Geodatabase, Data Typology and Data Dictionary","year":2023,"lang":"en","type":"dataset","venue":"Borealis","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver Island University; University of Calgary","funders":"","keywords":"Typology; Data dictionary; Data access; Data mapping; Field (mathematics)","score_opus":0.19502995002617526,"score_gpt":0.42124801537728823,"score_spread":0.22621806535111297,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6932044748","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000006067646,0.00027040267,0.00011213275,0.0028988386,0.0005979543,0.0006185776,0.9952482,0.00012012785,0.00012770014],"genre_scores_gemma":[0.0000010846921,0.0031213167,0.00007101082,0.0016576732,0.0012856405,0.000089913774,0.99359655,0.000038220904,0.00013858479],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99829936,0.000043770364,0.00032615816,0.00086548604,0.00017690507,0.0002883317],"domain_scores_gemma":[0.9953669,0.00030240713,0.00014743934,0.003953332,0.00006982673,0.0001601242],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039523153,0.0002340738,0.0004305706,0.00033533436,0.000228071,0.000053735595,0.001107221,0.00031207182,0.00003199507],"category_scores_gemma":[0.0008120487,0.00020236324,0.000037621947,0.00021492742,0.00014844302,0.00031404308,0.0026470083,0.00034959544,0.00004810914],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023417851,0.00006213383,0.00026433973,0.0005111012,0.00024979602,0.000089544104,0.0000032442333,1.8154624e-7,0.00001496702,0.000010642811,0.9980493,0.0007213304],"study_design_scores_gemma":[0.00051602785,0.00007063948,0.007181285,0.00016910995,0.00043538117,0.00020566783,0.000038667487,0.0001173037,5.2622806e-7,0.000040320294,0.9910364,0.0001886623],"about_ca_topic_score_codex":0.015361529,"about_ca_topic_score_gemma":0.012534574,"teacher_disagreement_score":0.0070128925,"about_ca_system_score_codex":0.00002878569,"about_ca_system_score_gemma":0.00031476462,"threshold_uncertainty_score":0.99119526},"labels":[],"label_agreement":null},{"id":"W6932319588","doi":"10.5683/sp3/j6s7pg","title":"OBRC data schema: Feed analysis reports","year":2024,"lang":"en","type":"dataset","venue":"Borealis","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Raw data; Schema (genetic algorithms); Documentation; Data file; Data collection; Sample (material); Conceptual schema; Data quality","score_opus":0.040774912008047025,"score_gpt":0.3419718696439778,"score_spread":0.3011969576359308,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6932319588","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000020674532,0.00049116503,0.000006137202,0.0011558853,0.00045943368,0.00024886627,0.99535626,0.00014429534,0.0021172513],"genre_scores_gemma":[0.000032942902,0.00036261158,0.000019463156,0.00092102523,0.00080630666,0.00003397726,0.99714273,0.000029807135,0.0006511143],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978668,0.0000383163,0.0005538877,0.000840607,0.0004364777,0.0002638989],"domain_scores_gemma":[0.99518377,0.000042366984,0.00021378702,0.004209569,0.00010686018,0.00024363576],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034427596,0.00030870704,0.0007810795,0.00074022927,0.00009273328,0.00007892272,0.00029048053,0.00043397612,0.0004226596],"category_scores_gemma":[0.00037383585,0.00023864752,0.00035288767,0.0010385101,0.00008659526,0.00007236347,0.00036529452,0.0006424105,0.00031925782],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000050514286,0.000099069905,0.00030155704,0.00027701535,0.003470605,0.0041290005,0.000004908592,0.0000011138959,0.000045265566,0.0000023043897,0.991555,0.00010914719],"study_design_scores_gemma":[0.0001070012,0.000044379347,0.0014114169,0.00012836864,0.01720075,0.0005965314,0.0000106573525,0.000022095199,0.000010033558,0.000015788135,0.98022515,0.00022782349],"about_ca_topic_score_codex":0.013632899,"about_ca_topic_score_gemma":0.015581133,"teacher_disagreement_score":0.013730144,"about_ca_system_score_codex":0.000082807266,"about_ca_system_score_gemma":0.00044808318,"threshold_uncertainty_score":0.9929354},"labels":[],"label_agreement":null},{"id":"W6939014353","doi":"10.60692/7rdr6-0nk21","title":"Does 3-Day Course of Oral Amoxycillin Benefit Children of Non-Severe Pneumonia with Wheeze: A Multicentric Randomised Controlled Trial","year":2008,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Placebo; Pneumonia; Randomized controlled trial; Amoxicillin; Clinical trial; Ambulatory; Vomiting","score_opus":0.012646960716969448,"score_gpt":0.2164667981996194,"score_spread":0.20381983748264995,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6939014353","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9932191,0.0000037897942,0.00096073386,0.000044724457,0.00033880418,0.004608544,0.00012933133,0.000082738974,0.0006122849],"genre_scores_gemma":[0.99933124,0.0000014401647,0.00005703645,0.000057468573,0.000082687504,0.0002426244,0.000026789145,0.000014964263,0.00018576774],"study_design_codex":"observational","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9978472,0.00008625488,0.0012319019,0.00014563769,0.00044870633,0.00024027613],"domain_scores_gemma":[0.997957,0.000036739,0.0009430059,0.00038553204,0.00052973494,0.00014801788],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003920893,0.000254821,0.0010883041,0.00034578415,0.00013437614,0.000017148335,0.00010099909,0.0001613589,0.000025429075],"category_scores_gemma":[0.000049576018,0.00012456815,0.00028485752,0.00033568675,0.00011279749,0.0003118731,0.000020131616,0.0001397541,0.000042824457],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.21094245,0.00012190843,0.755994,0.0005978277,0.0012387839,0.00001446568,0.02982821,0.00071624055,0.00025585986,0.000009319711,0.000032147178,0.00024879622],"study_design_scores_gemma":[0.7185172,0.00071226916,0.2753507,0.00031903962,0.0004937154,0.0002051714,0.0015522097,0.0013129167,0.0013081729,8.700932e-8,0.000033133107,0.00019542486],"about_ca_topic_score_codex":0.000021913062,"about_ca_topic_score_gemma":8.193747e-7,"teacher_disagreement_score":0.50757474,"about_ca_system_score_codex":0.00006392076,"about_ca_system_score_gemma":0.00019303324,"threshold_uncertainty_score":0.50797415},"labels":[],"label_agreement":null},{"id":"W6939671951","doi":"10.6084/m9.figshare.24792301.v1","title":"Additional file 1 of Adjunct prednisone in community-acquired pneumonia: 180-day outcome of a multicentre, double-blind, randomized, placebo-controlled trial","year":2023,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Clinical endpoint; Table (database); Subgroup analysis; End point; Life table; Endpoint Determination; Flow chart","score_opus":0.07248393834536275,"score_gpt":0.3246750462306094,"score_spread":0.2521911078852466,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6939671951","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.014818523,0.000021818889,2.3566561e-7,0.00011960402,0.00012791081,0.0055867825,0.9755367,0.00010668293,0.0036817552],"genre_scores_gemma":[0.1856968,0.0000032699354,0.00001972035,0.00012201581,0.000188671,0.014625527,0.7963944,0.000041871543,0.002907727],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9973128,0.00066189456,0.001093295,0.0002029608,0.0004178497,0.00031121683],"domain_scores_gemma":[0.9884055,0.010236639,0.0005160073,0.00043949074,0.00026880126,0.00013356336],"candidate_categories":["metaresearch","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0004363116,0.00024123187,0.0015158965,0.00051489,0.00012035074,0.000011919947,0.00018960438,0.00022956407,0.87291473],"category_scores_gemma":[0.014955345,0.0001924429,0.0006102069,0.0007299751,0.00006410157,0.00009626541,0.00012245883,0.0004106341,0.0012366062],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.5265515,0.00053606543,0.000017828477,0.0002523882,0.00018889716,0.00002243376,0.00020804249,0.000044899458,0.00018521666,0.000001483382,0.4719183,0.000072967356],"study_design_scores_gemma":[0.94791156,0.00030126268,0.0010727035,0.0022815254,0.000118930075,0.000009043069,0.00016322266,0.00089485495,0.00010074752,0.000007654185,0.04698337,0.00015513638],"about_ca_topic_score_codex":0.000034733028,"about_ca_topic_score_gemma":0.000110278466,"teacher_disagreement_score":0.8716781,"about_ca_system_score_codex":0.00006246645,"about_ca_system_score_gemma":0.00026877684,"threshold_uncertainty_score":0.99954104},"labels":[],"label_agreement":null},{"id":"W6944933521","doi":"10.25345/c5n29pj8t","title":"MassIVE MSV000096495 - The juxtamembrane domain of StkP is phosphorylated and influences cell division in Streptococcus pneumoniae","year":2024,"lang":"en","type":"dataset","venue":"California Digital Library","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Nautical Research Society","funders":"","keywords":"Streptococcus pneumoniae; Domain (mathematical analysis); Phosphorylation; Cell division; Cell culture; Cell; Strain (injury)","score_opus":0.005583611563533665,"score_gpt":0.22454812263607432,"score_spread":0.21896451107254067,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6944933521","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.13846365,0.0016443226,3.3697887e-7,0.0014495166,0.00016908327,0.00073124835,0.8566793,0.00007267392,0.00078986614],"genre_scores_gemma":[0.10425106,0.0012984301,0.0000030006813,0.0017962778,0.00018297676,0.00012604205,0.89163494,0.00010220287,0.0006050453],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978798,0.000059671027,0.0007360325,0.00057502696,0.0003866737,0.00036278332],"domain_scores_gemma":[0.9986413,0.00022798474,0.0002523262,0.0006161927,0.00003269799,0.00022948401],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00008434326,0.00047986384,0.0006929705,0.00038211033,0.00008871356,0.00027049784,0.00029825256,0.00045776356,0.00039118505],"category_scores_gemma":[0.00004695105,0.0002994966,0.00023035907,0.0006970063,0.00044966233,0.00040528027,0.00040796588,0.0009561564,0.0013365125],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051045972,0.00024900323,0.014063698,0.0012281905,0.00011377754,0.0004232594,0.00006293619,0.0000052605997,0.0009635286,0.0000034793911,0.9819569,0.00087890954],"study_design_scores_gemma":[0.0005813363,0.00031277107,0.0030371945,0.0010458083,0.00014246457,0.000030499143,0.00014357129,0.000018090897,0.00083738414,0.00050297345,0.993026,0.00032191724],"about_ca_topic_score_codex":0.000010778421,"about_ca_topic_score_gemma":0.0000025104753,"teacher_disagreement_score":0.03495566,"about_ca_system_score_codex":0.00003483843,"about_ca_system_score_gemma":0.00036204472,"threshold_uncertainty_score":0.9999457},"labels":[],"label_agreement":null},{"id":"W6957952829","doi":"10.60692/xcak4-shz40","title":"Can We Predict Oral Antibiotic Treatment Failure in Children with Fast-Breathing Pneumonia Managed at the Community Level? A Prospective Cohort Study in Malawi","year":2015,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Pneumonia; Community-acquired pneumonia; Referral; Prospective cohort study; Malaria; Cohort study; Severe Acute Malnutrition; Malnutrition","score_opus":0.042052336584768917,"score_gpt":0.2460092905879051,"score_spread":0.20395695400313618,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6957952829","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940672,0.000001673523,0.000040870586,0.00027315973,0.000064314,0.0043561812,0.00009479774,0.0001312183,0.0009705766],"genre_scores_gemma":[0.99935776,1.9953933e-7,0.000013085383,0.00006852733,0.000026009038,0.0002733511,0.00004118183,0.000017118498,0.00020276381],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99815816,0.00043532232,0.00054660154,0.00017465462,0.00039044223,0.00029483114],"domain_scores_gemma":[0.9989237,0.000010988556,0.00021774911,0.00058562745,0.00012581769,0.00013610537],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00075527193,0.00027991625,0.0004620766,0.00037444197,0.00030517686,0.00009358382,0.00012970624,0.00010157353,0.0000032442524],"category_scores_gemma":[0.000017245387,0.00015625589,0.000053600477,0.0005175785,0.000071900984,0.0003243608,0.00008366949,0.00038231636,0.00007428187],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010327104,0.00006331894,0.8852964,0.00005511525,0.00020913556,0.000022423268,0.113829434,0.00033800027,0.0000019756963,0.000003170256,0.000005778146,0.000071988936],"study_design_scores_gemma":[0.0053805173,0.0009695449,0.92039555,0.00025225355,0.0001559273,0.0005238848,0.071877025,0.00024646436,0.000037400732,3.0462158e-7,0.000012844988,0.00014830343],"about_ca_topic_score_codex":0.0013441049,"about_ca_topic_score_gemma":0.0019836745,"teacher_disagreement_score":0.04195241,"about_ca_system_score_codex":0.0014831965,"about_ca_system_score_gemma":0.00014131749,"threshold_uncertainty_score":0.637193},"labels":[],"label_agreement":null},{"id":"W6958004902","doi":"10.60692/gfkmc-ps175","title":"Inhaled delivery of 23-valent pneumococcal polysaccharide vaccine does not result in enhanced pulmonary mucosal immunoglobulin responses","year":2008,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Bronchoalveolar lavage; Antibody; Pneumococcal polysaccharide vaccine; Immunoglobulin A; Streptococcus pneumoniae; Immunoglobulin G; Polysaccharide; Immune system","score_opus":0.02696847271910186,"score_gpt":0.23462780738578595,"score_spread":0.2076593346666841,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6958004902","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99718225,0.00001140708,0.00023710397,0.00016423687,0.00038176242,0.0006905039,0.00013868371,0.00016826681,0.0010258051],"genre_scores_gemma":[0.999218,0.0000066624993,0.000036586916,0.00019809097,0.00009583087,0.00009967731,0.000022007327,0.000015871134,0.00030730347],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99744356,0.0001499328,0.0014553309,0.00020765858,0.00042060274,0.0003229289],"domain_scores_gemma":[0.99856263,0.0000307995,0.00046331866,0.00048508716,0.00032161086,0.00013654675],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040448102,0.00025608976,0.0005683503,0.00078652933,0.00015150293,0.000019652956,0.0001364816,0.00020933565,0.000020823789],"category_scores_gemma":[0.00009539354,0.00018126251,0.00017367491,0.0004541261,0.000060073246,0.0005027211,0.00006997159,0.00025374576,0.0002842486],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0050933864,0.00008687627,0.80640197,0.0014875993,0.00018357638,0.0003696799,0.03607591,0.00014786053,0.14961827,0.000032944463,0.000035479807,0.00046642317],"study_design_scores_gemma":[0.0031242252,0.00021884804,0.8821369,0.00060933887,0.000055393204,0.0013097399,0.0037177198,0.00034508563,0.10814481,2.843595e-7,0.0001040445,0.00023364769],"about_ca_topic_score_codex":0.000048211015,"about_ca_topic_score_gemma":0.0000014247997,"teacher_disagreement_score":0.07573487,"about_ca_system_score_codex":0.00023593078,"about_ca_system_score_gemma":0.00021794952,"threshold_uncertainty_score":0.7391671},"labels":[],"label_agreement":null},{"id":"W6958050055","doi":"10.60692/74cr2-58625","title":"Pneumococcal pneumonia prevalence among adults with severe acute respiratory illness in Thailand - comparison of Bayesian latent class modeling and conventional analysis","year":2019,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier de l’Université de Montréal; McGill University","funders":"","keywords":"Pneumonia; Pneumococcal pneumonia; Streptococcus pneumoniae; Gold standard (test); Respiratory tract infections; Community-acquired pneumonia; Respiratory disease; Etiology","score_opus":0.017467281988752772,"score_gpt":0.23801386098453392,"score_spread":0.22054657899578115,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6958050055","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99561346,0.000006463327,0.0029201203,0.000022536293,0.00008418995,0.00074207777,0.000084826344,0.000056295135,0.0004700426],"genre_scores_gemma":[0.99978465,4.9914274e-7,0.00002105603,0.000037899037,0.000015461972,0.000055320506,0.000026074415,0.0000095761025,0.000049485225],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983185,0.00007578231,0.00080572546,0.00021541289,0.00037761402,0.00020700082],"domain_scores_gemma":[0.99897414,0.0000103358225,0.00036844332,0.00030010447,0.00022325959,0.00012373785],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025894854,0.00019340584,0.0005575509,0.0006466523,0.000079344194,0.00004245343,0.0000741193,0.00014858755,0.00001927372],"category_scores_gemma":[0.0000054969105,0.0001427364,0.00010742012,0.0005361812,0.000057854206,0.0004935171,0.00003634,0.00019224013,0.00002598649],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000244815,0.00001094264,0.9739878,0.0012120695,0.0003270417,0.0000047935614,0.011579509,0.012509711,0.000072807554,0.000016214553,6.214336e-7,0.000033682107],"study_design_scores_gemma":[0.002105393,0.00018945443,0.7801331,0.0007701926,0.00041176454,0.000042545278,0.0046460833,0.21145412,0.00008150031,1.3657095e-7,0.000008416144,0.00015726248],"about_ca_topic_score_codex":0.000016063404,"about_ca_topic_score_gemma":0.0000072834573,"teacher_disagreement_score":0.1989444,"about_ca_system_score_codex":0.00009343939,"about_ca_system_score_gemma":0.00006828658,"threshold_uncertainty_score":0.5820622},"labels":[],"label_agreement":null},{"id":"W6958177321","doi":"10.60692/3hh6g-xsj77","title":"Pneumococcal pneumonia prevalence among adults with severe acute respiratory illness in Thailand - comparison of Bayesian latent class modeling and conventional analysis","year":2019,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier de l’Université de Montréal; McGill University","funders":"","keywords":"Pneumonia; Pneumococcal pneumonia; Streptococcus pneumoniae; Gold standard (test); Respiratory tract infections; Community-acquired pneumonia; Respiratory disease; Etiology","score_opus":0.017467281988752772,"score_gpt":0.23801386098453392,"score_spread":0.22054657899578115,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6958177321","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99561346,0.000006463327,0.0029201203,0.000022536293,0.00008418995,0.00074207777,0.000084826344,0.000056295135,0.0004700426],"genre_scores_gemma":[0.99978465,4.9914274e-7,0.00002105603,0.000037899037,0.000015461972,0.000055320506,0.000026074415,0.0000095761025,0.000049485225],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983185,0.00007578231,0.00080572546,0.00021541289,0.00037761402,0.00020700082],"domain_scores_gemma":[0.99897414,0.0000103358225,0.00036844332,0.00030010447,0.00022325959,0.00012373785],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025894854,0.00019340584,0.0005575509,0.0006466523,0.000079344194,0.00004245343,0.0000741193,0.00014858755,0.00001927372],"category_scores_gemma":[0.0000054969105,0.0001427364,0.00010742012,0.0005361812,0.000057854206,0.0004935171,0.00003634,0.00019224013,0.00002598649],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000244815,0.00001094264,0.9739878,0.0012120695,0.0003270417,0.0000047935614,0.011579509,0.012509711,0.000072807554,0.000016214553,6.214336e-7,0.000033682107],"study_design_scores_gemma":[0.002105393,0.00018945443,0.7801331,0.0007701926,0.00041176454,0.000042545278,0.0046460833,0.21145412,0.00008150031,1.3657095e-7,0.000008416144,0.00015726248],"about_ca_topic_score_codex":0.000016063404,"about_ca_topic_score_gemma":0.0000072834573,"teacher_disagreement_score":0.1989444,"about_ca_system_score_codex":0.00009343939,"about_ca_system_score_gemma":0.00006828658,"threshold_uncertainty_score":0.5820622},"labels":[],"label_agreement":null},{"id":"W6958281288","doi":"10.6084/m9.figshare.22614908.v1","title":"Additional file 6 of The burden of lower respiratory infections and their underlying etiologies in the Middle East and North Africa region, 1990–2019: results from the Global Burden of Disease Study 2019","year":2023,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Burden of disease; Middle East; Etiology; Disease burden; Disease; Respiratory system; Middle East respiratory syndrome; Respiratory disease","score_opus":0.13735176093644125,"score_gpt":0.2791765004817967,"score_spread":0.14182473954535546,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6958281288","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2336113,0.00013511899,4.278865e-8,0.00061097374,0.00002659078,0.00046387946,0.7647727,0.000018906527,0.00036048083],"genre_scores_gemma":[0.9512688,0.000008151172,7.497587e-7,0.00008453788,0.000116501564,0.000247613,0.048171483,0.000007930459,0.00009426407],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.99896955,0.00021038525,0.0002963353,0.00019866454,0.0001943639,0.00013070625],"domain_scores_gemma":[0.9971198,0.002051539,0.00020890513,0.00043511443,0.00013680791,0.00004783416],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00008158627,0.00012318481,0.00019301468,0.00005035942,0.00017802216,0.000012637957,0.00017268406,0.00006046517,0.0189906],"category_scores_gemma":[0.003508714,0.00006056106,0.00008675154,0.0005852052,0.000121596066,0.000053657925,0.00016770828,0.00018038388,0.000022530949],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007054398,0.00012745289,0.0035856843,0.00004234796,0.00006779547,0.000007883581,0.0040453286,0.00019876512,0.0000256316,0.0000026524847,0.9916703,0.00015560792],"study_design_scores_gemma":[0.00059142377,0.00030206476,0.7966115,0.0013897758,0.000042515912,0.000004939601,0.010105588,0.00006562388,0.0000011865109,0.00009900913,0.19071102,0.0000753764],"about_ca_topic_score_codex":0.00019704702,"about_ca_topic_score_gemma":0.00029161567,"teacher_disagreement_score":0.8009593,"about_ca_system_score_codex":0.000021602362,"about_ca_system_score_gemma":0.00018287479,"threshold_uncertainty_score":0.9819062},"labels":[],"label_agreement":null},{"id":"W6958416508","doi":"10.6084/m9.figshare.29386446.v1","title":"Does pneumonia increase the risk of dementia and cognitive decline? A systematic review and meta-analysis","year":2025,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Dementia; Pneumonia; Observational study; Odds ratio; Meta-analysis; Subgroup analysis; Hazard ratio; MEDLINE","score_opus":0.0297239832094031,"score_gpt":0.31337654530545334,"score_spread":0.2836525620960502,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6958416508","genre_codex":"review","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.025001455,0.58831376,0.000025283083,0.0099772,0.000040539842,0.008686793,0.36506584,0.00012600345,0.0027631256],"genre_scores_gemma":[0.99138874,0.0010300541,0.000005871605,0.0044020484,0.000008051507,0.00077995326,0.0017146422,0.0000071478958,0.00066349696],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99912995,0.00021676588,0.00031263728,0.0001561738,0.000106072825,0.000078372315],"domain_scores_gemma":[0.9987144,0.000607986,0.00020103231,0.00022997132,0.0001916659,0.000054935972],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00019242508,0.00011177954,0.0009392151,0.00010348176,0.000106507236,0.000016560089,0.00004892434,0.000038525937,0.0075405673],"category_scores_gemma":[0.003259158,0.000043979555,0.0003452802,0.0004328896,0.000021099015,0.000030722153,0.00008754803,0.000106399086,0.0000185311],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013514254,0.00014529712,0.020361837,0.49362525,0.4803032,0.000023151806,0.0001491134,0.000001137808,0.000116143114,0.000020419966,0.0051871496,0.000053802447],"study_design_scores_gemma":[0.00017677309,0.000029861667,0.035914555,0.010273159,0.9524721,0.000009327508,0.000067778965,0.000032741773,0.000056275952,0.00002154275,0.0008831922,0.000062676794],"about_ca_topic_score_codex":0.000025987549,"about_ca_topic_score_gemma":0.00008364559,"teacher_disagreement_score":0.9663873,"about_ca_system_score_codex":0.000004285513,"about_ca_system_score_gemma":0.000038083133,"threshold_uncertainty_score":0.99336666},"labels":[],"label_agreement":null},{"id":"W6958456927","doi":"10.6084/m9.figshare.22614902","title":"Additional file 4 of The burden of lower respiratory infections and their underlying etiologies in the Middle East and North Africa region, 1990–2019: results from the Global Burden of Disease Study 2019","year":2023,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Incidence (geometry); Middle East; Burden of disease; Etiology; Respiratory system; Disease; Disease burden","score_opus":0.1381878999531611,"score_gpt":0.2794482219268291,"score_spread":0.141260321973668,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6958456927","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.23366493,0.0001347712,4.2775202e-8,0.0006071355,0.000026562044,0.00046296965,0.76472795,0.000018889019,0.0003567534],"genre_scores_gemma":[0.95100826,0.000008152025,7.4908644e-7,0.000084390806,0.00011634376,0.00024707546,0.048434064,0.000007919704,0.00009303962],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.99896973,0.00021022465,0.00029633788,0.00019863958,0.00019435328,0.00013069756],"domain_scores_gemma":[0.9971188,0.002053471,0.00020890638,0.00043517072,0.00013583015,0.00004782712],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00008154835,0.00012317307,0.00019298795,0.000050362032,0.00017804152,0.00001263748,0.00017272709,0.000060465256,0.019129252],"category_scores_gemma":[0.0034964979,0.000060557737,0.00008674701,0.00058501447,0.00012158923,0.000053653956,0.00016769441,0.00018035377,0.000022619595],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007119254,0.00012691347,0.003603646,0.000042330696,0.00006778258,0.0000078857365,0.0040363516,0.00019904863,0.0000254972,0.0000026312462,0.99166125,0.00015547784],"study_design_scores_gemma":[0.0005934261,0.00030659686,0.7968268,0.0013941819,0.00004264414,0.0000049589785,0.010121372,0.00006659398,0.0000011898511,0.00009934635,0.1904673,0.00007561135],"about_ca_topic_score_codex":0.00019379356,"about_ca_topic_score_gemma":0.00028642808,"teacher_disagreement_score":0.80119395,"about_ca_system_score_codex":0.000021622182,"about_ca_system_score_gemma":0.00018267143,"threshold_uncertainty_score":0.9817674},"labels":[],"label_agreement":null},{"id":"W6968857867","doi":"10.5281/zenodo.4389249","title":"Benefits of Using Exceptional Keto Canada","year":2020,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Nucleofection; Gestational period; TSG101; Diafiltration; Dysgeusia; Liquation; Emperipolesis; Hyporeflexia; Demotion","score_opus":0.06739314585318516,"score_gpt":0.2582489382416594,"score_spread":0.19085579238847422,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6968857867","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9528418,0.000067253466,0.0010602482,0.0049153264,0.00010106376,0.00033489286,0.00030428937,0.00028056634,0.040094513],"genre_scores_gemma":[0.9982136,0.000014727754,0.00006849203,0.00085655635,0.0001742905,6.7240156e-9,0.00022146007,0.00035089662,0.00009995181],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991612,0.00006608682,0.00016816973,0.00016943236,0.00028259394,0.00015254781],"domain_scores_gemma":[0.9992014,0.000008682422,0.000058994254,0.00014239766,0.00038375956,0.00020474261],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009487762,0.00006962079,0.00011793035,0.00006684152,0.000600194,0.00004249748,0.00016601733,0.000031582833,0.006339968],"category_scores_gemma":[0.00028740044,0.000069529284,0.000035344783,0.00035259456,0.000065711145,0.00006187022,0.00020408773,0.000142738,0.00034939317],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035369268,0.00051629334,0.0015478634,0.0007227948,0.00035473207,0.00007922987,0.0023239988,0.0061618793,0.55911624,0.0061719357,0.33607632,0.08657504],"study_design_scores_gemma":[0.00053345395,0.00021555371,0.01452984,0.000037169724,0.000030564446,0.00017281441,0.00016748981,0.0006493198,0.0016123847,0.00000748874,0.9819494,0.00009453251],"about_ca_topic_score_codex":0.0013568915,"about_ca_topic_score_gemma":0.00004627597,"teacher_disagreement_score":0.64587307,"about_ca_system_score_codex":0.00011295744,"about_ca_system_score_gemma":0.000028645278,"threshold_uncertainty_score":0.99456835},"labels":[],"label_agreement":null},{"id":"W6969127558","doi":"10.5281/zenodo.8190571","title":"Salma derogatella Acrobasis","year":2022,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Type (biology); Population","score_opus":0.03812881462476156,"score_gpt":0.26363040783167985,"score_spread":0.2255015932069183,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6969127558","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.49230203,0.00015302902,0.0009229253,0.008493909,0.0004310192,0.0010392724,0.00034498403,0.0025196031,0.49379322],"genre_scores_gemma":[0.994753,0.000034709374,0.000044263317,0.0009922353,0.00012526278,9.601746e-8,0.00058892986,0.00087496464,0.00258656],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99871117,0.00024022283,0.00016714045,0.00027071623,0.0003375881,0.00027315572],"domain_scores_gemma":[0.9992386,0.000013202509,0.000053827025,0.00029861156,0.00021735742,0.0001783689],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00036754354,0.00009462219,0.00012261013,0.00021402625,0.0038729259,0.00015004644,0.00032870763,0.00003157239,0.03767655],"category_scores_gemma":[0.00020225046,0.0000982651,0.000072303235,0.00059753266,0.00009355925,0.000073174546,0.0008524803,0.00035276054,0.005200121],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002221343,0.0010954,0.00019779474,0.00014258725,0.0002459397,0.00028914624,0.0022347397,0.00039276062,0.2123599,0.00428296,0.5765753,0.20196132],"study_design_scores_gemma":[0.0005691297,0.00045516895,0.0017326319,0.000007680028,0.000026501823,0.001019861,0.0004200955,0.000085315776,0.00085506623,0.00004213771,0.9946857,0.000100704994],"about_ca_topic_score_codex":0.0000056900326,"about_ca_topic_score_gemma":9.841356e-8,"teacher_disagreement_score":0.50245094,"about_ca_system_score_codex":0.00020607367,"about_ca_system_score_gemma":0.000006658395,"threshold_uncertainty_score":0.9974239},"labels":[],"label_agreement":null},{"id":"W6976234262","doi":"10.60692/38r6k-kvz39","title":"Etiology and the challenge of diagnostic testing of community-acquired pneumonia in children and adolescents","year":2022,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Etiology; Pneumonia; Mycoplasma pneumoniae; Atypical pneumonia; Streptococcus pneumoniae; Sputum; Population; Serology; Tuberculosis","score_opus":0.02946109380176287,"score_gpt":0.22708835334083208,"score_spread":0.1976272595390692,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6976234262","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990074,0.000014434512,0.00003104117,0.00014128206,0.000043948447,0.00045033995,0.00004115382,0.000018397996,0.0002520086],"genre_scores_gemma":[0.99981284,0.0000011793982,0.000004928082,0.00010470773,0.000008470412,0.000056059485,0.0000062497934,0.0000035300966,0.0000020250943],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99905854,0.00030524834,0.00040986182,0.000040014947,0.00010402407,0.00008231949],"domain_scores_gemma":[0.999424,0.000089203306,0.00023404865,0.00017268129,0.00005318403,0.000026908114],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005539363,0.00006862277,0.00023619062,0.00016606794,0.0001644052,0.0000056887934,0.00005414434,0.000034371846,0.0000021728179],"category_scores_gemma":[0.0001711736,0.00004706871,0.000022196335,0.00015349947,0.00012306562,0.000067558416,0.000111467634,0.00015102031,0.0000014132842],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046795976,0.0000077420245,0.9649331,0.00033006453,0.000020836529,4.3103867e-7,0.034154266,0.000042703607,0.000026774147,0.000054880147,9.867304e-7,0.00038140008],"study_design_scores_gemma":[0.002623374,0.00017325541,0.9888311,0.00019535357,0.000033278346,0.00018335925,0.0076484876,0.00023585766,0.00002364014,0.0000020512048,0.000010913187,0.000039330662],"about_ca_topic_score_codex":0.000058521175,"about_ca_topic_score_gemma":5.531081e-7,"teacher_disagreement_score":0.02650578,"about_ca_system_score_codex":0.000024506964,"about_ca_system_score_gemma":0.000018699711,"threshold_uncertainty_score":0.19194062},"labels":[],"label_agreement":null},{"id":"W6976728581","doi":"10.60692/tg9k0-hhn67","title":"Can We Predict Oral Antibiotic Treatment Failure in Children with Fast-Breathing Pneumonia Managed at the Community Level? A Prospective Cohort Study in Malawi","year":2015,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Pneumonia; Community-acquired pneumonia; Referral; Prospective cohort study; Malaria; Cohort study; Severe Acute Malnutrition; Malnutrition","score_opus":0.042052336584768917,"score_gpt":0.2460092905879051,"score_spread":0.20395695400313618,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6976728581","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940672,0.000001673523,0.000040870586,0.00027315973,0.000064314,0.0043561812,0.00009479774,0.0001312183,0.0009705766],"genre_scores_gemma":[0.99935776,1.9953933e-7,0.000013085383,0.00006852733,0.000026009038,0.0002733511,0.00004118183,0.000017118498,0.00020276381],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99815816,0.00043532232,0.00054660154,0.00017465462,0.00039044223,0.00029483114],"domain_scores_gemma":[0.9989237,0.000010988556,0.00021774911,0.00058562745,0.00012581769,0.00013610537],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00075527193,0.00027991625,0.0004620766,0.00037444197,0.00030517686,0.00009358382,0.00012970624,0.00010157353,0.0000032442524],"category_scores_gemma":[0.000017245387,0.00015625589,0.000053600477,0.0005175785,0.000071900984,0.0003243608,0.00008366949,0.00038231636,0.00007428187],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010327104,0.00006331894,0.8852964,0.00005511525,0.00020913556,0.000022423268,0.113829434,0.00033800027,0.0000019756963,0.000003170256,0.000005778146,0.000071988936],"study_design_scores_gemma":[0.0053805173,0.0009695449,0.92039555,0.00025225355,0.0001559273,0.0005238848,0.071877025,0.00024646436,0.000037400732,3.0462158e-7,0.000012844988,0.00014830343],"about_ca_topic_score_codex":0.0013441049,"about_ca_topic_score_gemma":0.0019836745,"teacher_disagreement_score":0.04195241,"about_ca_system_score_codex":0.0014831965,"about_ca_system_score_gemma":0.00014131749,"threshold_uncertainty_score":0.637193},"labels":[],"label_agreement":null},{"id":"W6976787950","doi":"10.60692/j88xe-62p19","title":"Macrolides for better resolution of community-acquired pneumonia: A global meta-analysis of clinical outcomes with focus on microbial aetiology","year":2023,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Streptococcus pneumoniae; Regimen; Pneumonia; Resolution (logic); Klebsiella pneumoniae; Epidemiology; Etiology; Pathogen","score_opus":0.1708847266976339,"score_gpt":0.3543837740434994,"score_spread":0.1834990473458655,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6976787950","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939599,0.0000011469001,0.0030302305,0.0007205396,0.00014390593,0.0006200226,0.0010105469,0.00011228279,0.0004014067],"genre_scores_gemma":[0.9990707,1.2634861e-7,0.00009905186,0.0005286976,0.00002670077,0.00011478637,0.00011316241,0.000007603576,0.000039188286],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99777085,0.00033637744,0.0013529101,0.000108203145,0.00022953891,0.00020211685],"domain_scores_gemma":[0.99817777,0.00012300239,0.00074288336,0.0005120859,0.0003715879,0.00007268795],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010617857,0.00017595415,0.0014531463,0.0005626679,0.00014153031,0.00001489974,0.00011069263,0.00019149916,0.000011082936],"category_scores_gemma":[0.000094850635,0.00010913104,0.0010653082,0.00084471895,0.00013088452,0.00012184075,0.000040129868,0.000115825314,0.000046001685],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007322396,0.0000330482,0.94178295,0.00047854637,0.049418796,0.0000024416586,0.0060542994,0.0009669919,0.00007258588,0.00018563835,0.00014985628,0.00012258386],"study_design_scores_gemma":[0.002557382,0.0008340672,0.95026946,0.0000313849,0.042488135,0.000023911369,0.002437487,0.0007531777,0.00028734814,0.0000035514745,0.00019210704,0.000121969206],"about_ca_topic_score_codex":0.000043876895,"about_ca_topic_score_gemma":0.000010229031,"teacher_disagreement_score":0.0084865065,"about_ca_system_score_codex":0.000055484932,"about_ca_system_score_gemma":0.000057390916,"threshold_uncertainty_score":0.44502348},"labels":[],"label_agreement":null},{"id":"W6976818419","doi":"10.6084/m9.figshare.24130112.v1","title":"Additional file 2 of Genomic classification and antimicrobial resistance profiling of Streptococcus pneumoniae and Haemophilus influenza isolates associated with paediatric otitis media and upper respiratory infection","year":2023,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; McMaster University; University of Waterloo","funders":"","keywords":"Streptococcus mitis; Streptococcus pneumoniae; Virulence; Haemophilus; Streptococcaceae; Gene; Genotype; Respiratory infection","score_opus":0.032883369386949295,"score_gpt":0.2544152500982188,"score_spread":0.2215318807112695,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6976818419","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.43435454,0.00007024664,5.4329536e-8,0.000031225416,0.000011160373,0.00024167901,0.56514347,0.00004716109,0.000100433936],"genre_scores_gemma":[0.6715008,0.000045945468,0.000042209067,0.00016090166,0.00015013042,0.0004974265,0.3274719,0.000042575215,0.00008807509],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.99917114,0.000047339105,0.00027116088,0.00024250378,0.00012225576,0.00014562826],"domain_scores_gemma":[0.9985816,0.000722943,0.00027174246,0.00011654974,0.00022537979,0.000081825616],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00005023643,0.00013044832,0.00023763764,0.0002700698,0.00011697783,0.000015717069,0.000025601095,0.0001447636,0.04975477],"category_scores_gemma":[0.0016483276,0.00011786352,0.000034055807,0.00039575237,0.00006819356,0.000118071795,0.0000437793,0.00016000292,0.000025655743],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000061441766,0.00009643595,0.12497064,0.0011558521,0.00014401504,0.000017953467,0.00025604776,0.00001052831,0.051153034,0.000007709907,0.8213487,0.000777624],"study_design_scores_gemma":[0.0005542742,0.00015320341,0.97198814,0.0019474013,0.000044963967,0.000010381312,0.000030635445,0.00009718576,0.0007258184,0.000012138793,0.024314638,0.000121215904],"about_ca_topic_score_codex":0.000002468345,"about_ca_topic_score_gemma":0.00005324835,"teacher_disagreement_score":0.8470175,"about_ca_system_score_codex":0.000035063855,"about_ca_system_score_gemma":0.0001608454,"threshold_uncertainty_score":0.9511139},"labels":[],"label_agreement":null},{"id":"W6976920089","doi":"10.60692/wqf9s-1gf26","title":"Inhaled delivery of 23-valent pneumococcal polysaccharide vaccine does not result in enhanced pulmonary mucosal immunoglobulin responses","year":2008,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Bronchoalveolar lavage; Antibody; Pneumococcal polysaccharide vaccine; Immunoglobulin A; Streptococcus pneumoniae; Immunoglobulin G; Polysaccharide; Immune system","score_opus":0.02696847271910186,"score_gpt":0.23462780738578595,"score_spread":0.2076593346666841,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6976920089","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99718225,0.00001140708,0.00023710397,0.00016423687,0.00038176242,0.0006905039,0.00013868371,0.00016826681,0.0010258051],"genre_scores_gemma":[0.999218,0.0000066624993,0.000036586916,0.00019809097,0.00009583087,0.00009967731,0.000022007327,0.000015871134,0.00030730347],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99744356,0.0001499328,0.0014553309,0.00020765858,0.00042060274,0.0003229289],"domain_scores_gemma":[0.99856263,0.0000307995,0.00046331866,0.00048508716,0.00032161086,0.00013654675],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040448102,0.00025608976,0.0005683503,0.00078652933,0.00015150293,0.000019652956,0.0001364816,0.00020933565,0.000020823789],"category_scores_gemma":[0.00009539354,0.00018126251,0.00017367491,0.0004541261,0.000060073246,0.0005027211,0.00006997159,0.00025374576,0.0002842486],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0050933864,0.00008687627,0.80640197,0.0014875993,0.00018357638,0.0003696799,0.03607591,0.00014786053,0.14961827,0.000032944463,0.000035479807,0.00046642317],"study_design_scores_gemma":[0.0031242252,0.00021884804,0.8821369,0.00060933887,0.000055393204,0.0013097399,0.0037177198,0.00034508563,0.10814481,2.843595e-7,0.0001040445,0.00023364769],"about_ca_topic_score_codex":0.000048211015,"about_ca_topic_score_gemma":0.0000014247997,"teacher_disagreement_score":0.07573487,"about_ca_system_score_codex":0.00023593078,"about_ca_system_score_gemma":0.00021794952,"threshold_uncertainty_score":0.7391671},"labels":[],"label_agreement":null},{"id":"W6977185703","doi":"10.6084/m9.figshare.26601910.v1","title":"Additional file 1 of Phylogenomic insights into evolutionary trajectories of multidrug resistant S. pneumoniae CC271 over a period of 14 years in China","year":2024,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Phylogenetics; Phylogenetic tree; Genome; Period (music); Sampling (signal processing); Bayesian probability","score_opus":0.010291296117293371,"score_gpt":0.24136453190183269,"score_spread":0.2310732357845393,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6977185703","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.098152526,0.00045649507,5.399184e-8,0.0000298088,0.000044366447,0.0001660595,0.90018815,0.000024202098,0.0009383354],"genre_scores_gemma":[0.76313806,0.0000044011827,0.000043669806,0.000015246875,0.0000738177,0.00021003518,0.23616181,0.00001754813,0.00033542962],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.99914026,0.000031741634,0.00032957448,0.00017939747,0.0002090975,0.000109921406],"domain_scores_gemma":[0.9993228,0.00027473675,0.0000968539,0.00016812791,0.00008780609,0.000049729504],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000015726853,0.00010969425,0.00026450533,0.00027872637,0.00002690635,0.0000038085577,0.00006892881,0.000099641074,0.7202054],"category_scores_gemma":[0.0006452961,0.00009852698,0.00015103882,0.0003706143,0.00004729029,0.00007305404,0.000041288262,0.00017387883,0.000110285655],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004459059,0.00021340554,0.0002110143,0.0011191521,0.00007518578,0.00008146617,0.0014515582,0.000024747422,0.053682562,0.000018821316,0.9428322,0.000245325],"study_design_scores_gemma":[0.00031010396,0.00022948965,0.54756343,0.0065876422,0.000019232859,0.000021012263,0.000083456674,0.0004558814,0.00090054335,0.000055018394,0.44366196,0.00011219549],"about_ca_topic_score_codex":0.000029237503,"about_ca_topic_score_gemma":0.0000739898,"teacher_disagreement_score":0.7200951,"about_ca_system_score_codex":0.00009242816,"about_ca_system_score_gemma":0.00044834035,"threshold_uncertainty_score":0.40178135},"labels":[],"label_agreement":null},{"id":"W6977210373","doi":"10.6084/m9.figshare.12726616","title":"Additional file 14 of Immunoglobulin recognition of fecal bacteria in stunted and non-stunted children: findings from the Afribiota study","year":2020,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Feces; Statistical analysis; Bacteria; Antibody; Enterobacteriaceae","score_opus":0.028537941159386532,"score_gpt":0.2453132646229128,"score_spread":0.21677532346352626,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6977210373","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4172608,0.000011311489,3.7360333e-8,0.00012298267,0.000008471534,0.00032398407,0.58215874,0.000010204407,0.00010344276],"genre_scores_gemma":[0.60545915,8.881276e-7,0.000014013334,0.00018691778,0.000062980296,0.000098163815,0.3941617,0.000008061732,0.00000813871],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9992657,0.000048335958,0.0002654541,0.00017937108,0.0001449679,0.00009619255],"domain_scores_gemma":[0.99918807,0.00041628245,0.000108756416,0.00012365638,0.00010660481,0.000056622954],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000024842058,0.00010549966,0.00023166054,0.000045322555,0.0000464313,0.000009104588,0.000071238435,0.00007811572,0.78140223],"category_scores_gemma":[0.0013790946,0.00007913731,0.000057575155,0.00025682754,0.000018949482,0.00005189112,0.00006970469,0.00020089216,0.00022190616],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011566387,0.0005558005,0.015228673,0.00005982633,0.0001574836,0.0000135204045,0.0010383824,5.449363e-7,0.0119984755,4.784031e-8,0.9699462,0.00088534836],"study_design_scores_gemma":[0.0012658684,0.0004969588,0.9864526,0.001536924,0.000032738084,0.000006539948,0.00038686272,0.000032055534,0.00081991596,0.0000013605179,0.008890272,0.00007793654],"about_ca_topic_score_codex":0.000029830719,"about_ca_topic_score_gemma":0.000037233192,"teacher_disagreement_score":0.9712239,"about_ca_system_score_codex":0.000014845215,"about_ca_system_score_gemma":0.0000731154,"threshold_uncertainty_score":0.3227126},"labels":[],"label_agreement":null},{"id":"W6977404541","doi":"10.6084/m9.figshare.27118821.v2","title":"Pneumococcal serotypes missing prespecified efficacy threshold in immunogenicity trials: real-world evidence from national immunization programs","year":2024,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Immunogenicity; Serotype; Pneumococcal conjugate vaccine; Pneumococcal disease; Streptococcus pneumoniae; Immunization","score_opus":0.2572829415540022,"score_gpt":0.4146722621617529,"score_spread":0.15738932060775068,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6977404541","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9031071,0.015445538,0.000029608467,0.005456979,0.0014300128,0.0069578895,0.04081181,0.0022311027,0.02452993],"genre_scores_gemma":[0.9767375,0.0000673891,0.000048371137,0.000112785616,0.0006347365,0.00030890634,0.021629805,0.000038966442,0.00042154136],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998262,0.00018278498,0.00056323333,0.00037519418,0.00039066686,0.00022613748],"domain_scores_gemma":[0.9983009,0.0010478758,0.000101047444,0.00026273108,0.00019135942,0.00009606485],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00037744024,0.00018769217,0.00036769363,0.0002852686,0.00011484305,0.00020071112,0.00014300941,0.00014965454,0.017865775],"category_scores_gemma":[0.0031947347,0.00015574481,0.00019666117,0.0008433957,0.000015971942,0.00030274974,0.00007292623,0.00043844452,0.00066777284],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014459561,0.0021886504,0.040011548,0.00248596,0.001249331,0.0008247771,0.0032762694,0.0013292363,0.7590514,0.00056808663,0.07637055,0.11119824],"study_design_scores_gemma":[0.0022696631,0.00031192746,0.7357921,0.04920902,0.00020695751,0.000050102106,0.00006523979,0.009069656,0.01711862,0.00064243714,0.18460354,0.0006607088],"about_ca_topic_score_codex":0.00010308768,"about_ca_topic_score_gemma":0.00016341555,"teacher_disagreement_score":0.74193275,"about_ca_system_score_codex":0.0002715463,"about_ca_system_score_gemma":0.00050397444,"threshold_uncertainty_score":0.98303205},"labels":[],"label_agreement":null},{"id":"W6977522363","doi":"10.6084/m9.figshare.29510644","title":"Additional file 1 of Community versus academic hospital community-acquired pneumonia patients: a nested cohort study","year":2025,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital; University of Calgary; Kingston General Hospital; Sunnybrook Health Science Centre; Memorial University of Newfoundland; Université de Sherbrooke; University of Toronto; William Osler Health System; Université Laval; McGill University Health Centre; University of Ottawa; Lions Gate Hospital; Humber River Regional Hospital; Surrey Memorial Hospital; University of British Columbia","funders":"","keywords":"Pneumonia; Nested case-control study; Cohort study; Cohort; Retrospective cohort study; MEDLINE","score_opus":0.034378315396405415,"score_gpt":0.3071624753266601,"score_spread":0.2727841599302547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6977522363","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.17668343,0.000005107417,2.6759022e-8,0.000062421685,0.00009193448,0.00081958086,0.8167404,0.0000976244,0.005499454],"genre_scores_gemma":[0.39071712,2.9741054e-7,0.0000028149952,0.00025629505,0.000028330904,0.001283591,0.6073431,0.000012119217,0.0003563898],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9986237,0.00045931374,0.0003471924,0.000114146394,0.00026303902,0.00019258018],"domain_scores_gemma":[0.99604225,0.0026373768,0.00017144604,0.0005984086,0.00045145684,0.00009907593],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000069892856,0.00017679055,0.00033658964,0.00017276664,0.00054819975,0.000011769659,0.00027391405,0.00017578992,0.86034495],"category_scores_gemma":[0.007111551,0.00016860825,0.0001234669,0.0005159333,0.00004316484,0.00010613672,0.00026482818,0.001075951,0.00059331686],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005147093,0.0018359766,0.012964583,0.00012105308,0.00019068907,0.0000032738262,0.00037191669,9.873577e-7,0.000033336448,5.473301e-7,0.98393154,0.0004946329],"study_design_scores_gemma":[0.001326387,0.0010533766,0.7278687,0.0013602531,0.00006323429,0.0000013365551,0.0009700599,0.000006334651,0.000013748292,0.0000037290176,0.26723248,0.00010037931],"about_ca_topic_score_codex":0.000038969483,"about_ca_topic_score_gemma":0.000042723474,"teacher_disagreement_score":0.85975164,"about_ca_system_score_codex":0.00011924061,"about_ca_system_score_gemma":0.00025827496,"threshold_uncertainty_score":0.85137045},"labels":[],"label_agreement":null},{"id":"W6977559245","doi":"10.7892/boris.114661","title":"Foreign peptide triggers boost in pneumococcal metabolism and growth.","year":2018,"lang":"en","type":"article","venue":"Open Access CRIS of the University of Bern","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"IONICS Mass Spectrometry (Canada)","funders":"","keywords":"Streptococcus pneumoniae; Transcriptome; Population; Peptide; Gene; Carbohydrate metabolism; Mutant; Pathogen; Signal peptide; Virulence","score_opus":0.031632054347474826,"score_gpt":0.30866462231287844,"score_spread":0.2770325679654036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6977559245","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95424765,0.000024032126,0.000024298759,0.0015254071,0.00006255715,0.00031310288,0.000012241623,0.0000056298336,0.04378509],"genre_scores_gemma":[0.9984803,0.00005835057,0.000058486672,0.00015031821,0.000022242399,2.489976e-7,0.0000010118166,0.000005468743,0.0012235261],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994666,0.00005199933,0.000118065494,0.00014089436,0.00011319876,0.00010924947],"domain_scores_gemma":[0.99944514,0.000033636843,0.00011553221,0.00022678124,0.00011726178,0.00006162529],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001505838,0.00007290925,0.00025553376,0.00011988001,0.0001453031,0.00002287213,0.00064006384,0.000055459015,0.00015968826],"category_scores_gemma":[0.00005192833,0.0000576796,0.00007476346,0.00024682778,0.00041643655,0.00044319715,0.00075276,0.00010971883,0.000005788488],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047944163,0.00033020574,0.9319416,0.00013334064,0.00017134528,0.000023422988,0.001499077,0.000005614812,0.057836562,0.0022802097,0.0035013484,0.0017978256],"study_design_scores_gemma":[0.0019623407,0.000095946554,0.9682544,0.0001224465,0.00017085951,0.000013679089,0.00087402185,0.00004116449,0.013909656,0.00058076304,0.013886365,0.000088374734],"about_ca_topic_score_codex":0.0028836443,"about_ca_topic_score_gemma":0.0005384685,"teacher_disagreement_score":0.044232707,"about_ca_system_score_codex":0.000024401352,"about_ca_system_score_gemma":0.000074910684,"threshold_uncertainty_score":0.43592268},"labels":[],"label_agreement":null},{"id":"W6977679963","doi":"10.6084/m9.figshare.22614896.v1","title":"Additional file 2 of The burden of lower respiratory infections and their underlying etiologies in the Middle East and North Africa region, 1990–2019: results from the Global Burden of Disease Study 2019","year":2023,"lang":"en","type":"article","venue":"Figshare","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Burden of disease; Middle East; Etiology; Disease burden; Respiratory system; Disease; Respiratory disease; Incidence (geometry)","score_opus":0.13558456602078453,"score_gpt":0.2789481786162112,"score_spread":0.14336361259542665,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6977679963","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.23256464,0.00013571342,4.160383e-8,0.00060851173,0.00002671001,0.000462418,0.76582,0.00001890377,0.00036301915],"genre_scores_gemma":[0.94993913,0.000008271736,7.4527003e-7,0.000084761654,0.000118216514,0.0002481214,0.0494978,0.000007948963,0.000095019524],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.99896985,0.00021036177,0.00029624617,0.00019856993,0.00019428828,0.00013065232],"domain_scores_gemma":[0.9971306,0.002040952,0.00020910097,0.00043483035,0.00013674717,0.000047823465],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00008114412,0.00012314721,0.000192972,0.000050328195,0.00017798947,0.000012632735,0.00017262911,0.000060465572,0.019503692],"category_scores_gemma":[0.0035035233,0.000060544222,0.00008673168,0.0005848778,0.00012156154,0.00005364303,0.0001677235,0.00018035491,0.000022603332],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006938391,0.0001259891,0.003471052,0.000042031676,0.00006735679,0.000007907107,0.0040073907,0.0002008305,0.000024845538,0.0000025853813,0.99182445,0.0001561934],"study_design_scores_gemma":[0.0005896645,0.00030143323,0.78926134,0.0013740171,0.000042407995,0.0000049455534,0.010010722,0.000065678694,0.0000011784175,0.0000985328,0.19817488,0.000075171185],"about_ca_topic_score_codex":0.00019506241,"about_ca_topic_score_gemma":0.0002851926,"teacher_disagreement_score":0.79364955,"about_ca_system_score_codex":0.000021625672,"about_ca_system_score_gemma":0.00018248132,"threshold_uncertainty_score":0.9813926},"labels":[],"label_agreement":null},{"id":"W6977854395","doi":"10.7892/boris.109091","title":"Streptococcus pneumoniae proteins AmiA, AliA, and AliB bind peptides found in ribosomal proteins of other bacterial species","year":2018,"lang":"en","type":"article","venue":"Open Access CRIS of the University of Bern","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"IONICS Mass Spectrometry (Canada)","funders":"","keywords":"Ribosomal protein; Streptococcus pneumoniae; Ribosomal RNA; Peptide; Streptococcus gordonii; Bacteria; 50S; Gammaproteobacteria","score_opus":0.043814124231664864,"score_gpt":0.3133326150353405,"score_spread":0.2695184908036756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6977854395","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9900118,0.000008007861,0.000018377768,0.0007802573,0.000087073255,0.0013457721,0.00007794057,0.000007023296,0.007663753],"genre_scores_gemma":[0.99737287,0.0000078187795,0.00010689763,0.000032907243,0.000054138603,0.000002011013,0.000002012129,0.0000107346805,0.0024106116],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99916077,0.00008643384,0.00021796985,0.00020172863,0.000186632,0.0001464855],"domain_scores_gemma":[0.9990585,0.000027180287,0.0003010761,0.00036951058,0.00018526216,0.00005846253],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015082887,0.00011929039,0.00035960498,0.00014060308,0.00014600402,0.000040677474,0.0007281093,0.00008672592,0.0004612463],"category_scores_gemma":[0.000052517735,0.00009653028,0.00008302496,0.0002776211,0.00078865763,0.0005035084,0.00086657907,0.00011599395,0.0000045201914],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028257183,0.00035819094,0.6105441,0.00018529271,0.00011670618,0.0000070518226,0.0012074739,0.0000049481946,0.3862871,0.00014158197,0.00027473088,0.00059029437],"study_design_scores_gemma":[0.0023388185,0.00051051105,0.8750663,0.0005506644,0.000121135046,0.000005253101,0.0009067233,0.000017574112,0.10461164,0.00011562511,0.015615911,0.00013984511],"about_ca_topic_score_codex":0.006115209,"about_ca_topic_score_gemma":0.0051718405,"teacher_disagreement_score":0.28167546,"about_ca_system_score_codex":0.000043106415,"about_ca_system_score_gemma":0.0001472697,"threshold_uncertainty_score":0.92444074},"labels":[],"label_agreement":null},{"id":"W6979164453","doi":"","title":"Management of community-acquired pneumonia in adults.","year":2007,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Guideline; Pneumonia; Infectious disease (medical specialty); Pandemic; Disease; MEDLINE","score_opus":0.025559573584344256,"score_gpt":0.26702799824795165,"score_spread":0.2414684246636074,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6979164453","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96008176,0.000045316614,0.000034807934,0.0004499382,0.000129142,0.00058254116,0.0000017847531,0.00003921205,0.038635496],"genre_scores_gemma":[0.9989133,0.000030478996,0.000028208182,0.00032714344,0.000025273323,0.0002040059,0.000004075038,0.000009582733,0.00045791635],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9992491,0.00004228359,0.00025537953,0.00006849808,0.00012887793,0.00025587092],"domain_scores_gemma":[0.99951,0.000038709433,0.00005098138,0.00027096504,0.000031204545,0.00009815963],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006158205,0.00007232933,0.00016067132,0.00018488857,0.000046793502,0.000002656865,0.00007248313,0.000052147385,0.000009551537],"category_scores_gemma":[0.00002103061,0.000064101725,0.00005185831,0.00032829578,0.00006222293,0.000033483808,0.00004276454,0.00014262652,0.000007724278],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033189927,0.0015266357,0.3713038,0.000844575,0.00016717085,0.00029634396,0.0010627108,0.0000069817324,0.0033652156,0.0009067007,0.0001466963,0.62004125],"study_design_scores_gemma":[0.0011679657,0.000045214278,0.9906413,0.0000690228,0.000025583415,0.00001694289,0.00059243524,0.0000017186682,0.0011208192,0.000044442862,0.0062193247,0.000055217373],"about_ca_topic_score_codex":0.00006655837,"about_ca_topic_score_gemma":0.00008246593,"teacher_disagreement_score":0.61998606,"about_ca_system_score_codex":0.000063486055,"about_ca_system_score_gemma":0.000006799942,"threshold_uncertainty_score":0.26139924},"labels":[],"label_agreement":null},{"id":"W6991698553","doi":"","title":"Hunley, Alberta (Birth, 1908-12-10)","year":2012,"lang":"en","type":"other","venue":"Spectrum Research Repository (Concordia University)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Nucleofection; Gestational period; TSG101; Dysgeusia; Diafiltration; Liquation; Emperipolesis; Triacetin; Fusible alloy","score_opus":0.03153188191471359,"score_gpt":0.2833366085634965,"score_spread":0.25180472664878295,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6991698553","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0056285085,0.00037699862,0.000012260791,0.0011731944,0.0012640827,0.0009105272,0.000028452929,0.00040302906,0.99020296],"genre_scores_gemma":[0.06894612,0.00036414477,0.000008697729,0.000052516403,0.0025915361,0.000007464882,0.000037977396,0.00044604123,0.9275455],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9959848,0.000553662,0.0002879627,0.00086540304,0.0009379527,0.0013702406],"domain_scores_gemma":[0.9969062,0.00024048136,0.0002065987,0.0013863725,0.00015368329,0.001106664],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00033340926,0.00050401775,0.00076467724,0.0027442677,0.0006030788,0.000076717755,0.00057181227,0.0008794719,0.008652677],"category_scores_gemma":[0.000107299915,0.0005054918,0.00046950014,0.0011809565,0.0008011568,0.00016068251,0.00038194147,0.0017698625,0.0026044166],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003439915,0.0007396687,0.11420082,0.00060697045,0.0012768948,0.003722804,0.00012447695,7.710331e-7,0.0077561205,0.0033728092,0.8670244,0.0008302578],"study_design_scores_gemma":[0.0011145285,0.00056091754,0.012495999,0.00030503768,0.00022990543,0.00032946368,0.00013969628,0.0000037457005,0.001097234,0.00002097563,0.98323333,0.0004691684],"about_ca_topic_score_codex":0.027549138,"about_ca_topic_score_gemma":0.024174323,"teacher_disagreement_score":0.11620892,"about_ca_system_score_codex":0.00086159975,"about_ca_system_score_gemma":0.0012764349,"threshold_uncertainty_score":0.99973965},"labels":[],"label_agreement":null},{"id":"W6992526643","doi":"","title":"Looking up the Daiya-gawa - Nikko, Japan","year":2013,"lang":"en","type":"other","venue":"Rice University's digital scholarship archive (Rice University)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Nucleofection; Gestational period; TSG101; Liquation; Hyporeflexia; Dysgeusia; Diafiltration; Fusible alloy; Articular cartilage damage","score_opus":0.012515869502363114,"score_gpt":0.20780217505767207,"score_spread":0.19528630555530896,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6992526643","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.013662867,0.00010146995,0.00070175424,0.0006614457,0.00051349774,0.00096247764,0.00043180943,0.0006794005,0.98228526],"genre_scores_gemma":[0.03335682,0.0003533132,0.000083236475,0.0005151156,0.00037522757,5.7533583e-7,0.0002205586,0.00028757702,0.96480757],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9971834,0.00026652426,0.00021565195,0.00091819087,0.000607403,0.00080883846],"domain_scores_gemma":[0.9973847,0.00034040777,0.00040070096,0.0010095955,0.0001773373,0.00068721315],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000113053655,0.0006843663,0.000653562,0.0020093578,0.00083025877,0.00026060196,0.0011613994,0.000522381,0.00081541395],"category_scores_gemma":[0.0001335433,0.0006232664,0.00058352516,0.0016334018,0.0006613862,0.0011173391,0.00073310937,0.0018134014,0.0020552394],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009262589,0.0023692162,0.08586345,0.0016705913,0.007565431,0.009655858,0.0028648688,0.00003941223,0.009215377,0.06267246,0.805497,0.011660088],"study_design_scores_gemma":[0.0015693742,0.00020854615,0.012142535,0.00044350477,0.0007404066,0.00019056287,0.0022784723,0.0000065621894,0.000014599915,0.00008219063,0.98162436,0.0006989008],"about_ca_topic_score_codex":0.00037325954,"about_ca_topic_score_gemma":0.00015723263,"teacher_disagreement_score":0.17612736,"about_ca_system_score_codex":0.0005915368,"about_ca_system_score_gemma":0.00045151493,"threshold_uncertainty_score":0.99962187},"labels":[],"label_agreement":null},{"id":"W6995359107","doi":"","title":"Canadian born","year":2018,"lang":"en","type":"other","venue":"YorkSpace (York University)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Government (linguistics); Population; Ethnic group; Agency (philosophy)","score_opus":0.00972375534606542,"score_gpt":0.20385839465853553,"score_spread":0.1941346393124701,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6995359107","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00009783239,0.000092013644,0.000049908715,0.0018203289,0.000605361,0.00026011467,0.000045145323,0.0003385107,0.9966908],"genre_scores_gemma":[0.0006592641,0.00010545479,0.00011730409,0.00054041075,0.0006383439,4.413961e-7,0.000034738277,0.00020774112,0.9976963],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99911535,0.000033650624,0.000058838865,0.0003060368,0.00012906536,0.00035703383],"domain_scores_gemma":[0.9988416,0.000010308367,0.00008022602,0.00043709556,0.00004372784,0.00058704306],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000029800385,0.0002238883,0.00028915098,0.001442604,0.00015137157,0.000015860387,0.00016460288,0.0005582547,0.008309225],"category_scores_gemma":[0.000015375792,0.00023295348,0.0001376425,0.00066805125,0.00013848995,0.00002218472,0.000032303527,0.00026511156,0.0035458815],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000065658096,0.000024578741,0.0035962723,0.000033820244,0.00015199177,0.00046073055,0.00003290057,2.5485792e-7,0.00003373377,0.00064762525,0.9947898,0.00022172218],"study_design_scores_gemma":[0.000405181,0.00009766374,0.0005012344,0.00025585075,0.00021703338,0.000036785492,0.00019710872,0.0000019066326,0.000005426601,0.0000027433985,0.9980501,0.00022899822],"about_ca_topic_score_codex":0.07767914,"about_ca_topic_score_gemma":0.49513865,"teacher_disagreement_score":0.4174595,"about_ca_system_score_codex":0.00048198507,"about_ca_system_score_gemma":0.0010674666,"threshold_uncertainty_score":0.99723},"labels":[],"label_agreement":null},{"id":"W7006201301","doi":"","title":"Structure and functional genomics of lipopolysaccharide expression in Haemophilus influenzae . In: Immunology of Complex Carbohydrates, edited by A.M. Wu, Academic/Plenum Publishers","year":2001,"lang":"en","type":"article","venue":"NPARC","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Functional genomics; Haemophilus influenzae; Lipopolysaccharide; Immunity; Genome; Immune system; Genomics; Expression (computer science)","score_opus":0.0210446751335055,"score_gpt":0.2607270567274745,"score_spread":0.23968238159396899,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7006201301","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975559,0.00028688976,0.00001335011,0.0011448856,0.0002536447,0.0002048182,0.00005536318,0.000016278338,0.0004688481],"genre_scores_gemma":[0.9991954,0.00010700995,0.00007187626,0.00038175838,0.0001097235,0.000010089258,0.00006404705,0.000014169296,0.000045917877],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989085,0.000056231875,0.00045792124,0.00021228523,0.00015319424,0.00021182459],"domain_scores_gemma":[0.9994351,0.000068082896,0.00015455598,0.00018507395,0.00008168866,0.00007544592],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001085425,0.00013330278,0.0003591882,0.00037453743,0.0000334397,0.0000060908196,0.000075712545,0.00031271635,0.00024103683],"category_scores_gemma":[0.00011580407,0.0001190077,0.000038165086,0.00032368323,0.00020489385,0.00016838427,0.00006331862,0.0005319864,7.124009e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015778668,0.000059756603,0.13870208,0.00003108826,0.00002346909,0.0000071498926,0.00017770201,0.00008432762,0.8580137,0.000042008574,0.0022036138,0.0004973181],"study_design_scores_gemma":[0.0054909643,0.0003716823,0.6509245,0.0002269455,0.00006101182,0.00021611628,0.00043617422,0.0006231482,0.3025813,0.0020685825,0.036705237,0.00029433353],"about_ca_topic_score_codex":0.00010821568,"about_ca_topic_score_gemma":0.000055261524,"teacher_disagreement_score":0.5554324,"about_ca_system_score_codex":0.00008919475,"about_ca_system_score_gemma":0.00012022727,"threshold_uncertainty_score":0.48529932},"labels":[],"label_agreement":null},{"id":"W7007870392","doi":"","title":"Adaptation is also an emergency","year":2023,"lang":"en","type":"article","venue":"Knowledge UdeS (Institutional Deposit of the University of Sherbrooke)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Government (linguistics); Flooding (psychology); Adaptation (eye); Heat wave; Public health","score_opus":0.027771691225851228,"score_gpt":0.2512219025584695,"score_spread":0.22345021133261828,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7007870392","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9783769,0.00043315976,0.005050531,0.00038556845,0.0004763998,0.00020985559,0.000011237435,0.00007464867,0.014981665],"genre_scores_gemma":[0.9959415,0.00041919656,0.00024062158,0.00002718046,0.000056175013,3.693455e-7,0.000010841811,0.0000062252934,0.0032978435],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999305,0.00004168845,0.00016256407,0.00015599647,0.0002146158,0.000120105295],"domain_scores_gemma":[0.9994387,0.0000127750845,0.000055560347,0.00023855867,0.00016957296,0.00008480483],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009256246,0.00009327177,0.00016316822,0.00015866915,0.00036688402,0.0000022851743,0.00018474295,0.00008568938,0.00013290926],"category_scores_gemma":[0.000027113312,0.000080798076,0.00019889034,0.00050248,0.000246002,0.00014604034,0.000081108315,0.00010533217,0.0001224939],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002180519,0.0011592153,0.09652287,0.0028005217,0.00046960087,0.0000379108,0.017169356,0.019714937,0.83125186,0.00814999,0.010909514,0.011596167],"study_design_scores_gemma":[0.0013414033,0.00042436284,0.82116586,0.0012266992,0.00040138312,0.00005685475,0.00082993635,0.038211547,0.042417683,0.00034544722,0.09335307,0.00022573283],"about_ca_topic_score_codex":0.0002621049,"about_ca_topic_score_gemma":0.0015564109,"teacher_disagreement_score":0.7888342,"about_ca_system_score_codex":0.00020165167,"about_ca_system_score_gemma":0.00014550764,"threshold_uncertainty_score":0.32948497},"labels":[],"label_agreement":null},{"id":"W7008930838","doi":"","title":"Decreased susceptibility of Streptococcus pneumoniae to fluoroquinolones in Canada","year":2009,"lang":"en","type":"other","venue":"TSpace (University of Toronto)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Streptococcus pneumoniae; Streptococcaceae; Antibacterial agent; Antibiotics; Streptococcus","score_opus":0.010376855949052567,"score_gpt":0.2385046817775539,"score_spread":0.22812782582850133,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7008930838","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.49144068,0.00054551,0.000026100945,0.0013560943,0.00020126264,0.0012115454,0.00016096348,0.00008359503,0.50497425],"genre_scores_gemma":[0.9018736,0.00018455506,0.00016658336,0.00009634384,0.000044703796,7.240007e-7,0.000019859734,0.000064467815,0.09754918],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99901104,0.00005594908,0.00014209907,0.00030463136,0.00025380758,0.00023244605],"domain_scores_gemma":[0.9989623,0.000025068264,0.00020002616,0.00050949503,0.0000723435,0.00023078414],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000060862203,0.0001996911,0.000653454,0.00014146797,0.000029118873,0.0000013271393,0.00017986487,0.00020044658,0.015580957],"category_scores_gemma":[0.000028527147,0.00023180671,0.00012597382,0.00012176763,0.000077979574,0.000039866238,0.000053135613,0.0001448076,0.00001006409],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054083054,0.0015241443,0.6263543,0.0016901582,0.00076680636,0.00076321646,0.004278899,0.000058077825,0.0651054,0.00012094538,0.18871932,0.110077925],"study_design_scores_gemma":[0.0010011382,0.00035903952,0.9405173,0.00046127202,0.00012016271,0.0000031567674,0.0025489964,0.00000843632,0.00011449856,0.0000011253791,0.054653205,0.00021166101],"about_ca_topic_score_codex":0.9957708,"about_ca_topic_score_gemma":0.999687,"teacher_disagreement_score":0.4104329,"about_ca_system_score_codex":0.0011169972,"about_ca_system_score_gemma":0.001533629,"threshold_uncertainty_score":0.98531896},"labels":[],"label_agreement":null},{"id":"W7016206984","doi":"","title":"Welfare of emus during their handling and transport","year":2013,"lang":"en","type":"other","venue":"cIRcle (University of British Columbia)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Limiting; Heat stress; Nucleofection; Congenital myopathy","score_opus":0.005762718555762382,"score_gpt":0.16520386908875717,"score_spread":0.1594411505329948,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7016206984","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92971075,0.00046434984,0.000025119549,0.00007491631,0.0000974817,0.0003175521,0.00026825166,0.00008420849,0.0689574],"genre_scores_gemma":[0.89652264,0.00081816735,0.00003464044,0.000012299838,0.000045527024,4.546536e-7,0.00001944751,0.00007295111,0.10247386],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9993878,0.0000145442455,0.00010017717,0.00023957953,0.00012024097,0.0001376352],"domain_scores_gemma":[0.999474,0.0000066128773,0.00014398909,0.00020021414,0.00006571103,0.00010949815],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000033327087,0.000055343986,0.00043697684,0.00010178746,0.00010954186,0.000008983813,0.000078721896,0.00024030867,0.00081066304],"category_scores_gemma":[0.000004448477,0.00016347667,0.00013467713,0.00011465782,0.00024969282,0.000047258774,0.000029239069,0.00015589669,0.0000059984],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000045420114,0.0008918243,0.35897163,0.010644249,0.0018656278,0.0016353381,0.0010839158,0.0000031478094,0.016429702,0.0000047735098,0.032774452,0.5756499],"study_design_scores_gemma":[0.0011235209,0.00007507706,0.9681044,0.0012380419,0.00016466892,0.00017811931,0.0007224811,0.0000037512445,0.000002268463,0.0000032150422,0.028242812,0.00014160536],"about_ca_topic_score_codex":0.053663142,"about_ca_topic_score_gemma":0.08277774,"teacher_disagreement_score":0.6091328,"about_ca_system_score_codex":0.000021158277,"about_ca_system_score_gemma":0.000046433277,"threshold_uncertainty_score":0.9526386},"labels":[],"label_agreement":null},{"id":"W7020025749","doi":"","title":"Infection with Mycoplasma pneumoniae is not related to asthma control, asthma severity, and location of airway obstruction","year":2010,"lang":"en","type":"article","venue":"DOAJ (DOAJ: Directory of Open Access Journals)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Mycoplasma pneumoniae; Spirometry; Asthma; Mycoplasma; Airway obstruction; Vital capacity; Pulmonary function testing","score_opus":0.061489053326215674,"score_gpt":0.454901385108439,"score_spread":0.39341233178222335,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7020025749","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953139,0.00028228454,0.00047138432,0.0010885753,0.00081258523,0.0008629736,0.00002827222,0.000059543316,0.0010805003],"genre_scores_gemma":[0.99823546,0.0006365567,0.000119787466,0.00052626064,0.000119964985,0.000047839167,0.000008020543,0.000050687522,0.00025541525],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99763304,0.00016250218,0.00084346364,0.00045198112,0.00061253976,0.00029644824],"domain_scores_gemma":[0.99692875,0.00015193905,0.0007795116,0.0004643611,0.0012847749,0.00039068903],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00082117476,0.0003187247,0.0007769198,0.0009865183,0.0002940677,0.00026833412,0.00033801314,0.000266673,0.0012738899],"category_scores_gemma":[0.0003957999,0.00026537577,0.00010668311,0.0017890838,0.00021820041,0.0013800847,0.00017859752,0.00077020307,0.000018930912],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037025262,0.0001858878,0.4910093,0.0001239189,0.00017634737,0.000010024648,0.0001580379,0.00015539963,0.4979633,0.00004496708,0.00069424766,0.009108296],"study_design_scores_gemma":[0.00171329,0.00017545541,0.9181541,0.00047188892,0.00015419057,0.0007541507,0.000034497494,0.00023369827,0.06997322,0.0002346704,0.007813677,0.00028716162],"about_ca_topic_score_codex":0.00071673346,"about_ca_topic_score_gemma":0.00032385942,"teacher_disagreement_score":0.4279901,"about_ca_system_score_codex":0.00008480266,"about_ca_system_score_gemma":0.0002623677,"threshold_uncertainty_score":0.99997985},"labels":[],"label_agreement":null},{"id":"W7030380261","doi":"","title":"Molecular characterization of efflux-mediated macrolide resistance among Canadian isolates of Streptococcus pneumoniae","year":2003,"lang":"en","type":"dissertation","venue":"Mspace (University of Manitoba)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Streptococcus pneumoniae; Bacteria; Streptococcaceae; Genotype; Antibiotic resistance; Gene; Strain (injury)","score_opus":0.0056896897912755914,"score_gpt":0.19625699242112155,"score_spread":0.19056730262984595,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7030380261","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9930394,0.00005520919,0.000026628344,0.0002130744,0.00021518403,0.00057287666,0.0002464996,0.000025165933,0.005605946],"genre_scores_gemma":[0.9958489,0.00014021227,0.000021729415,0.000027399827,0.000014994204,0.0000013797342,0.001021151,0.000033867753,0.0028903733],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99890053,0.00007990012,0.0002475103,0.00027790244,0.00025219092,0.00024195216],"domain_scores_gemma":[0.9982819,0.00003052515,0.0006386553,0.00035601787,0.0004870447,0.00020583905],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00009298762,0.000228804,0.0005948736,0.000649019,0.00011870735,0.00000513205,0.00016185726,0.00041155,0.000032323573],"category_scores_gemma":[0.00006121282,0.00029218243,0.00021780429,0.00048511924,0.00014206072,0.00010340298,0.000013153404,0.00027890623,0.000009874377],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007164261,0.00009816436,0.2755782,0.0009249202,0.00025203283,0.00007072976,0.00031816983,0.00001011168,0.72240764,0.00006393018,0.00014559741,0.00005884367],"study_design_scores_gemma":[0.00071732706,0.00016397679,0.9584621,0.0007747126,0.0004475116,0.0000022139088,0.0033173822,0.000038816703,0.031983834,0.0000076159936,0.003855369,0.00022912887],"about_ca_topic_score_codex":0.018736502,"about_ca_topic_score_gemma":0.84526616,"teacher_disagreement_score":0.8265296,"about_ca_system_score_codex":0.00017622826,"about_ca_system_score_gemma":0.0005598705,"threshold_uncertainty_score":0.99995303},"labels":[],"label_agreement":null},{"id":"W7034595873","doi":"","title":"Trama - Jeff Neill, Michael Sicoly, Jim Vallance","year":2014,"lang":"en","type":"other","venue":"Bulletin of Miscellaneous Information (Royal Gardens Kew)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Performance art; Gloom; George (robot); Popular music","score_opus":0.005742977191913111,"score_gpt":0.19801364335951843,"score_spread":0.19227066616760533,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7034595873","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00015828272,0.00027851647,0.0000018595078,0.0006910747,0.0005370426,0.00065105536,0.000098639845,0.00033376744,0.9972498],"genre_scores_gemma":[0.001767769,0.0002541947,0.00024842413,0.0021424342,0.0005620263,0.000029365652,0.00013487159,0.00018257031,0.9946783],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982026,0.00006633162,0.00067878317,0.00025083323,0.00043883448,0.00036257142],"domain_scores_gemma":[0.99841315,0.0000874705,0.0005603908,0.0005443194,0.00016461611,0.00023007247],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00017107598,0.0004141317,0.0006969906,0.00013852405,0.00008005512,0.00003557922,0.00020668916,0.0006218059,0.2551654],"category_scores_gemma":[0.00013764529,0.0003738683,0.0002999517,0.000012532799,0.00018530844,1.5140324e-7,0.00005392935,0.0004376527,0.024437886],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005553255,0.00009565777,0.00002294219,0.00087498815,0.0001310877,0.000028383767,0.000056605346,0.00005267763,0.000014267828,0.00003044503,0.9970699,0.0015675323],"study_design_scores_gemma":[0.0011143072,0.00038290618,0.00008868402,0.0005112786,0.00016340894,0.0003277701,0.00003265923,0.000022882961,0.00001992653,0.0000042848565,0.9969723,0.00035959168],"about_ca_topic_score_codex":0.0009836471,"about_ca_topic_score_gemma":0.00047995563,"teacher_disagreement_score":0.23072751,"about_ca_system_score_codex":0.000058764002,"about_ca_system_score_gemma":0.00007152573,"threshold_uncertainty_score":0.9998713},"labels":[],"label_agreement":null},{"id":"W7038216863","doi":"","title":"Identifying the Sociodemographic and Environmental Risk Factors of Childhood Pneumonia in South Asia","year":2024,"lang":"en","type":"dissertation","venue":"MacSphere (McMaster University)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Pneumonia; Incidence (geometry); Child mortality; Public health; Risk factor; Infant mortality; Mortality rate; Rural area; Epidemiology","score_opus":0.009050878641609503,"score_gpt":0.20908765028116053,"score_spread":0.20003677163955103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7038216863","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97128177,0.0006004697,0.00000417093,0.00003003008,0.00025385813,0.00036238425,0.00009657031,0.000036261437,0.027334493],"genre_scores_gemma":[0.94303113,0.0003109303,0.0000048640873,0.000013878171,0.000032537944,0.0000012242934,0.00011692883,0.00003471687,0.056453764],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989273,0.000091930524,0.00021726139,0.00035426125,0.00020967246,0.0001995641],"domain_scores_gemma":[0.99948376,0.000041695173,0.00018511442,0.00019442319,0.00001137204,0.00008361458],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000070620765,0.00026537888,0.00034715576,0.00040663723,0.00016302643,0.000027558666,0.00012615355,0.00028663102,0.0027676057],"category_scores_gemma":[0.000008083442,0.00020933444,0.00023320809,0.00043084848,0.00012950209,0.000081679624,0.00005913436,0.00077353604,0.000014320121],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000091396694,0.00026243163,0.92585313,0.00063579244,0.0008461599,0.00019520253,0.03541919,0.000018818315,0.00899236,0.00013856999,0.000036825204,0.02751012],"study_design_scores_gemma":[0.00075320137,0.00013014133,0.9040001,0.0004692325,0.0010929158,0.000012400812,0.08156579,0.000030492793,0.00034749726,0.00007266859,0.011277586,0.0002479748],"about_ca_topic_score_codex":0.00008565965,"about_ca_topic_score_gemma":0.00051331293,"teacher_disagreement_score":0.046146598,"about_ca_system_score_codex":0.00008527361,"about_ca_system_score_gemma":0.00006767939,"threshold_uncertainty_score":0.998144},"labels":[],"label_agreement":null},{"id":"W7038801298","doi":"","title":"Investigation of Fluoroquinolone resistance-associated mutations in Canadian clinical isolates and laboratory mutants of Streptococcus pneumoniae","year":2006,"lang":"en","type":"dissertation","venue":"Mspace (University of Manitoba)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Streptococcus pneumoniae; Subtyping; Antibiotic resistance; Drug resistance; Antibiotics; Selection (genetic algorithm); Mutant; Genotype; Bacteria","score_opus":0.017182267550439,"score_gpt":0.2479832597247758,"score_spread":0.2308009921743368,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7038801298","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99754393,0.00019308118,0.0000010838879,0.00038079562,0.00013331362,0.00041549417,0.0003209494,0.000018613022,0.000992735],"genre_scores_gemma":[0.99885756,0.00014911842,0.000044308756,0.000014186652,0.000015355887,9.99093e-7,0.0004575648,0.000017116472,0.00044379637],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99886376,0.00014126481,0.00037391362,0.00025386075,0.0001632721,0.00020395126],"domain_scores_gemma":[0.9984141,0.000104038794,0.0006258433,0.00020362141,0.00047870295,0.00017369671],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024896068,0.00016273827,0.000594565,0.0007106373,0.00010576828,0.0000040059817,0.00009385599,0.00048462246,0.000005389184],"category_scores_gemma":[0.00015582934,0.0002117662,0.00010837921,0.0006029307,0.00028043028,0.00010167022,0.000013590259,0.00034261166,0.00000219108],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055842425,0.00009340632,0.97779185,0.00042506974,0.00013342197,0.00003485413,0.0005050056,0.000009400075,0.020476252,0.000051156338,0.00031770335,0.0001060384],"study_design_scores_gemma":[0.0010144408,0.00020477307,0.9902228,0.0008819868,0.00028811317,6.879849e-7,0.0058254176,0.000048008747,0.00091105263,0.000058558348,0.00040326206,0.00014086337],"about_ca_topic_score_codex":0.09564724,"about_ca_topic_score_gemma":0.9922993,"teacher_disagreement_score":0.8966521,"about_ca_system_score_codex":0.00021370454,"about_ca_system_score_gemma":0.001152313,"threshold_uncertainty_score":0.91037494},"labels":[],"label_agreement":null},{"id":"W7042366262","doi":"","title":"Patho-adaptive evolution of Haemophilus spp. bacterial respiratory colonizing opportunistic pathogens","year":2018,"lang":"es","type":"dissertation","venue":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Científicas)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Instituto de Salud Carlos III; National Institutes of Health; Universidad Pública de Navarra; Sociedad Española de Neumología y Cirugía Torácica; Genome British Columbia","keywords":"Respiratory system; Population; Virulence; Transmission (telecommunications)","score_opus":0.03330419478752107,"score_gpt":0.2715210830713392,"score_spread":0.23821688828381815,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7042366262","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8707807,0.0017069645,0.0028982456,0.0030557972,0.01415902,0.0037186556,0.0021149751,0.00077329826,0.10079234],"genre_scores_gemma":[0.99178344,0.00031128488,0.0007389247,0.00017611022,0.003975959,0.00041095895,0.0017955314,0.00021204278,0.00059576763],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","domain_scores_codex":[0.991835,0.0011640987,0.002374301,0.001640242,0.0016614774,0.001324872],"domain_scores_gemma":[0.99209857,0.00043076376,0.0023408646,0.0013021434,0.0027060206,0.0011216579],"candidate_categories":["metaepi_narrow","sts","research_integrity"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.0013576959,0.001289731,0.0018145792,0.0015820864,0.0015549149,0.00019531189,0.00075938116,0.0024375261,0.00022597107],"category_scores_gemma":[0.0019560058,0.0013089762,0.00087651896,0.0013958465,0.00016131239,0.00049841445,0.00025157302,0.0016525916,0.00009637793],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032444221,0.0027891938,0.0032109749,0.0018548311,0.0015512991,0.0015030616,0.0038646276,0.000033037362,0.43921417,0.5387892,0.0014239721,0.0025211938],"study_design_scores_gemma":[0.0034785639,0.0018096091,0.045537222,0.002940195,0.001903365,0.0015420578,0.0026224009,0.00041076855,0.0057204613,0.00030671275,0.9321948,0.0015338014],"about_ca_topic_score_codex":0.000007454486,"about_ca_topic_score_gemma":0.0003033445,"teacher_disagreement_score":0.9307709,"about_ca_system_score_codex":0.0027589037,"about_ca_system_score_gemma":0.0063076266,"threshold_uncertainty_score":0.99998546},"labels":[],"label_agreement":null},{"id":"W7065968107","doi":"","title":"Evolution and molecular characterization of clinical respiratory macrolide-resistant Streptococcus pneumoniae in Canada","year":2012,"lang":"en","type":"dissertation","venue":"Mspace (University of Manitoba)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Serotype; Streptococcus pneumoniae; Efflux; Bacterial genetics; Molecular epidemiology; Gene; Antibiotic resistance; Streptococcaceae; Drug resistance","score_opus":0.01636018148533509,"score_gpt":0.24990588550295217,"score_spread":0.2335457040176171,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7065968107","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99802685,0.00015252542,0.000021740376,0.00018418046,0.00035207477,0.00045355322,0.00007560808,0.000013162889,0.00072033145],"genre_scores_gemma":[0.9994999,0.00007606775,0.0000090513695,0.000048719256,0.000048054495,0.0000011356918,0.00016480968,0.000019272895,0.00013298662],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987263,0.00014186562,0.00035423724,0.00026802084,0.00031048807,0.00019905668],"domain_scores_gemma":[0.9987192,0.000040499603,0.000570178,0.000260691,0.0002585667,0.0001508391],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022306087,0.00017987216,0.00060328946,0.00029760346,0.000070794165,0.0000031209336,0.00009345482,0.00029781734,0.000010930926],"category_scores_gemma":[0.000062046405,0.0002206153,0.00012182988,0.00024005324,0.00007885787,0.00010298186,0.00003192375,0.00036953253,0.0000026742762],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017125574,0.0000992904,0.67620575,0.00042262237,0.00007044368,0.00007725069,0.00006801252,0.0000024692151,0.32207048,0.000056122677,0.000049304905,0.00070697285],"study_design_scores_gemma":[0.00084946834,0.00016417934,0.99065787,0.00035730575,0.00024376002,0.000002306174,0.003570469,0.00003572914,0.0013620001,0.0000052263276,0.0025919047,0.00015977508],"about_ca_topic_score_codex":0.26196593,"about_ca_topic_score_gemma":0.9889196,"teacher_disagreement_score":0.7269537,"about_ca_system_score_codex":0.0003917233,"about_ca_system_score_gemma":0.0015554448,"threshold_uncertainty_score":0.89964306},"labels":[],"label_agreement":null},{"id":"W7072164352","doi":"","title":"In vitro activity and pharmacodynamic/pharmacokinetic parameters of clarithromycin and azithromycin: why they matter in the treatment of respiratory tract infections","year":2019,"lang":"en","type":"article","venue":"DOAJ (DOAJ: Directory of Open Access Journals)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Azithromycin; Clarithromycin; Respiratory tract infections; Respiratory tract; Antibiotics; Antibacterial agent; Clinical trial","score_opus":0.13761831421384985,"score_gpt":0.51646051756985,"score_spread":0.37884220335600016,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7072164352","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99473953,0.0025649157,0.000011097037,0.0006002293,0.00021006457,0.001192373,0.000044827317,0.0000074334826,0.000629505],"genre_scores_gemma":[0.9940257,0.0049684565,0.00001804914,0.00083096063,0.00003425843,0.00006777797,0.0000022309184,0.000027740207,0.0000247906],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9978569,0.0005104277,0.0007066907,0.0003385093,0.0003263498,0.0002610861],"domain_scores_gemma":[0.9983679,0.0005338224,0.00051828456,0.00035963836,0.000092234004,0.00012812324],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007145811,0.0002816963,0.0009053317,0.0010014884,0.00007592354,0.00009095075,0.0003232983,0.00011978023,0.0008228951],"category_scores_gemma":[0.00003360154,0.00019734171,0.00015346815,0.0006508351,0.00021705493,0.0008399608,0.00009937196,0.00043201074,0.0000031685124],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021713872,0.0014817808,0.48472145,0.00010321352,0.000104917395,0.000016260223,0.0003022273,0.00008579792,0.51052076,0.0000019323043,0.00011668945,0.0023278575],"study_design_scores_gemma":[0.0028503756,0.000221208,0.90915585,0.0002381799,0.00020457037,0.00006527953,0.00011511905,0.00010170401,0.08560304,0.00016985061,0.0011065234,0.00016832349],"about_ca_topic_score_codex":0.0018491106,"about_ca_topic_score_gemma":0.00013932312,"teacher_disagreement_score":0.4249177,"about_ca_system_score_codex":0.000115121424,"about_ca_system_score_gemma":0.00010647547,"threshold_uncertainty_score":0.9010124},"labels":[],"label_agreement":null},{"id":"W7083226321","doi":"","title":"The Scottish Landscape Awards 2025","year":2025,"lang":"en","type":"other","venue":"Goldsmiths (University of London)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Photography; Event (particle physics); Quarter (Canadian coin); Work (physics)","score_opus":0.006428539803723276,"score_gpt":0.2190842397200587,"score_spread":0.21265569991633543,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7083226321","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00049127534,0.0015815014,0.00027883323,0.0027667712,0.00060076825,0.0003696021,0.00010856495,0.00018680385,0.99361587],"genre_scores_gemma":[0.0016333985,0.0021601792,0.0000877097,0.00021151862,0.00014037904,5.0605706e-7,0.000017265074,0.000062215244,0.9956868],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991634,0.000049111233,0.00010359172,0.00024465172,0.00022825961,0.00021101585],"domain_scores_gemma":[0.99908227,0.000067158624,0.00015779723,0.0004992842,0.00009272849,0.00010075862],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009966954,0.00017643943,0.0003943619,0.0003158541,0.00022037918,0.00001105762,0.0002512538,0.0003121096,0.0022632491],"category_scores_gemma":[0.000033507327,0.00015187085,0.0002583674,0.00033180235,0.00024453897,0.000028450244,0.00011565013,0.0003113469,0.0002793969],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003449091,0.00006490778,0.006584144,0.00017403904,0.00038138172,0.000087078915,0.00003804371,7.075501e-7,0.000050867475,0.0006990501,0.98452353,0.0073617827],"study_design_scores_gemma":[0.0009449325,0.000086279055,0.009293463,0.00045289984,0.00035443495,0.000014672935,0.00027692807,0.000012243976,0.000008095491,0.000028463022,0.988397,0.00013059261],"about_ca_topic_score_codex":0.0006295992,"about_ca_topic_score_gemma":0.0013107571,"teacher_disagreement_score":0.0072311903,"about_ca_system_score_codex":0.000046560588,"about_ca_system_score_gemma":0.00048658068,"threshold_uncertainty_score":0.9986488},"labels":[],"label_agreement":null},{"id":"W7083451500","doi":"10.5281/zenodo.17211419","title":"Paediatric Sleep Education Package - Swahili Version","year":2025,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Swahili; Sleep (system call); Sleep hygiene; Literacy; Pillar; Tanzania; Health literacy","score_opus":0.015369697921817362,"score_gpt":0.2626109971763247,"score_spread":0.24724129925450733,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7083451500","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.17816402,0.00038486626,0.0027663365,0.008420914,0.00085200707,0.0010065817,0.000091649934,0.0014801245,0.8068335],"genre_scores_gemma":[0.9897202,0.00013896753,0.000056473,0.0012332859,0.00024719597,8.9851156e-8,0.0008890945,0.00044876302,0.0072658863],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99897164,0.00014644014,0.00018163487,0.0002739303,0.00020754791,0.00021879846],"domain_scores_gemma":[0.9989584,0.000018352786,0.000052154053,0.0003758399,0.00044764296,0.00014763123],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00026329246,0.00010225583,0.00012075568,0.0004488186,0.0015417415,0.0001811075,0.00024497934,0.00007832858,0.00695485],"category_scores_gemma":[0.0005047354,0.00010019396,0.000067824694,0.0009279953,0.00008380274,0.00013098978,0.00031551608,0.00024948877,0.009208237],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000787666,0.0007208162,0.00029673136,0.00021335883,0.00008294767,0.00001251546,0.00035801125,0.00001483732,0.042504903,0.004474431,0.6548764,0.29636627],"study_design_scores_gemma":[0.00052017876,0.00018793676,0.009307703,0.000045032393,0.00005642691,0.000067827394,0.00023381217,0.00006931307,0.0008164138,0.00011325132,0.9884939,0.000088214256],"about_ca_topic_score_codex":0.000006379838,"about_ca_topic_score_gemma":1.058018e-7,"teacher_disagreement_score":0.8115562,"about_ca_system_score_codex":0.00020554959,"about_ca_system_score_gemma":0.000021204905,"threshold_uncertainty_score":0.9997581},"labels":[],"label_agreement":null},{"id":"W7084402243","doi":"10.57745/nnny6j","title":"records_0226.pkl","year":2025,"lang":"en","type":"dataset","venue":"Recherche Data Gouv France","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Rimouski","funders":"","keywords":"","score_opus":0.2702981536146452,"score_gpt":0.46101086488390625,"score_spread":0.19071271126926104,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084402243","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000016490792,0.0013969071,0.00012445611,0.0026512104,0.0017976303,0.00055755774,0.9911747,0.0001385254,0.0021425532],"genre_scores_gemma":[5.9427526e-7,0.006842758,0.0007018469,0.0048161936,0.00088954094,0.000071100156,0.97215784,0.00002259009,0.014497541],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9972511,0.00044630156,0.00051669584,0.0010076091,0.00034506852,0.00043320988],"domain_scores_gemma":[0.99355346,0.00064463285,0.00020630007,0.005236176,0.0001526183,0.00020679052],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0012706975,0.0004415136,0.0007943714,0.00027739102,0.00015033506,0.000048638347,0.0013154716,0.001582223,0.00063995074],"category_scores_gemma":[0.0033926775,0.00039050748,0.00014987725,0.0008898101,0.00012830328,0.00016417532,0.00064562634,0.003328961,0.00043789027],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021429212,0.0002146027,0.000109917055,0.00078452536,0.00019861398,0.000090108806,0.000004654424,3.7215852e-7,0.00014506889,0.000002301457,0.9874385,0.010989909],"study_design_scores_gemma":[0.0005405692,0.00009702761,0.00027933522,0.0008579092,0.00048107508,0.00008485834,0.0000080070095,0.000020934074,0.000042692795,0.00003331008,0.997206,0.0003483093],"about_ca_topic_score_codex":0.00042321841,"about_ca_topic_score_gemma":0.00019427312,"teacher_disagreement_score":0.019016832,"about_ca_system_score_codex":0.00027448667,"about_ca_system_score_gemma":0.0014106962,"threshold_uncertainty_score":0.9998547},"labels":[],"label_agreement":null},{"id":"W7084402930","doi":"10.15468/dl.njj49k","title":"Occurrence Download","year":2025,"lang":"en","type":"dataset","venue":"Global Biodiversity Information Facility","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Geodetic datum; Coordinate system; Matching (statistics); Download; Range (aeronautics); Geographic coordinate conversion","score_opus":0.013451088180506925,"score_gpt":0.24694787703850382,"score_spread":0.2334967888579969,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084402930","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00035599672,0.000014630493,0.0000033596568,0.0006222871,0.0007460371,0.00041189446,0.9970175,0.00011273855,0.00071557815],"genre_scores_gemma":[0.0000113258175,0.000084002655,3.7594276e-7,0.0026616147,0.0000021257385,0.0000052751143,0.9972344,5.2789266e-9,8.7190773e-7],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988306,0.00003870499,0.0003538096,0.00019063796,0.00035154034,0.000234692],"domain_scores_gemma":[0.99876595,0.000016113741,0.0001726431,0.00053599715,0.00032395025,0.00018532698],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00012667406,0.0002451045,0.00033840496,0.00016119244,0.0002877224,0.00006218787,0.00019692832,0.00043476612,0.0010259402],"category_scores_gemma":[0.00019929132,0.00022885614,0.00022488783,0.00042966023,0.00015158967,0.0003668145,0.00019022812,0.00039461176,0.03909822],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043919634,0.000073625706,0.0038482405,0.00044475138,0.00007264524,0.000005820807,0.000010518525,0.0000020841308,2.9943197e-7,6.827506e-8,0.9945817,0.00091631047],"study_design_scores_gemma":[0.00054483936,0.00007028521,0.00044976312,0.000012018003,0.00021537811,0.000020832194,0.000046364938,5.816377e-8,0.0000034488198,2.1665544e-7,0.9984561,0.00018069964],"about_ca_topic_score_codex":0.0001647549,"about_ca_topic_score_gemma":0.000006823811,"teacher_disagreement_score":0.03807228,"about_ca_system_score_codex":0.00037744257,"about_ca_system_score_gemma":0.00050171243,"threshold_uncertainty_score":0.9998872},"labels":[],"label_agreement":null},{"id":"W7084616894","doi":"10.5281/zenodo.17263681","title":"NAVIGATING THE LANDSCAPE OF LOCAL GOVERNMENT: COMPARE USA AND CANADA, SIERRA-LEON AND LIBERIA","year":2025,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Decentralization; Local government; Autonomy; Accountability; Corporate governance; Unitary state; Democracy; Local governance; Democratic governance","score_opus":0.014051551541482327,"score_gpt":0.2421601755371922,"score_spread":0.22810862399570989,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7084616894","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.012702958,0.0006088942,0.00033910162,0.002002858,0.00014394145,0.00063880195,0.0010242348,0.00019772426,0.98234147],"genre_scores_gemma":[0.86525416,0.00072556484,0.000043335327,0.00087593193,0.0003151474,1.3348573e-7,0.0007821104,0.0030384401,0.1289652],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99908894,0.00011047918,0.00015409707,0.00021141148,0.00028463153,0.00015042174],"domain_scores_gemma":[0.9994311,0.00002530182,0.000107863045,0.00023715763,0.00009614688,0.00010244837],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00014070467,0.00011978077,0.00019475252,0.000035522386,0.0005358549,0.00007992371,0.00016478437,0.00006276073,0.005178017],"category_scores_gemma":[0.00011709602,0.00009273312,0.00002151365,0.0001502458,0.00019993683,0.000020005937,0.00037282193,0.00034963532,0.00005860789],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033572105,0.000059343703,0.0005108443,0.00055827806,0.00018476609,0.000022431883,0.00029018597,0.00000526515,0.0010342996,0.00059621414,0.92777246,0.068932354],"study_design_scores_gemma":[0.00037684778,0.00010410126,0.0033102462,0.00037760191,0.000055437547,0.0000856798,0.00049303717,0.00007938541,0.000057440833,0.000003499312,0.9949724,0.0000842905],"about_ca_topic_score_codex":0.011448001,"about_ca_topic_score_gemma":0.0027251416,"teacher_disagreement_score":0.85337627,"about_ca_system_score_codex":0.00007428832,"about_ca_system_score_gemma":0.000021635382,"threshold_uncertainty_score":0.9957314},"labels":[],"label_agreement":null},{"id":"W7095519369","doi":"","title":"Genetic analysis of pbp2x in clinical Streptococcus pneumoniae","year":2015,"lang":"en","type":"article","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Streptococcus pneumoniae; Genetic analysis; Strain (injury); Sequence analysis; Genetic diversity; Genotype; Genetic variation; Gene","score_opus":0.07700556273690641,"score_gpt":0.39477595998430454,"score_spread":0.31777039724739814,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7095519369","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98893833,0.00003438857,0.00012446787,0.0003873611,0.00009908199,0.00015886761,0.0000030881197,0.000027991318,0.010226446],"genre_scores_gemma":[0.998938,0.000015585973,0.00008153891,0.00041890694,0.000049431015,0.000010623725,0.000003134382,0.0000058254864,0.00047690168],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989511,0.00007046829,0.0005261653,0.00016752238,0.00015808133,0.00012670722],"domain_scores_gemma":[0.9992138,0.000064799264,0.00007201935,0.00029419185,0.00010358395,0.0002516159],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029723282,0.00007210541,0.00041033622,0.00041367149,0.000009711998,0.0000033159863,0.000048800583,0.00009294975,0.00020162619],"category_scores_gemma":[0.00024908184,0.00005344119,0.00021597992,0.0009919413,0.00007119112,0.000021671494,0.000023447525,0.00013723057,0.000039209208],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008746505,0.00028645518,0.9945398,0.000005734275,0.0002943624,0.000025803989,0.00005543039,0.00027615234,0.0021278318,0.00004129671,0.00022053049,0.002117835],"study_design_scores_gemma":[0.0007688121,0.0003081074,0.99247634,0.000008586691,0.0006629787,0.0000033755105,0.000111269226,0.0018262155,0.00012668566,0.000024935182,0.0036260772,0.000056596382],"about_ca_topic_score_codex":0.0000754304,"about_ca_topic_score_gemma":0.00039506072,"teacher_disagreement_score":0.009999745,"about_ca_system_score_codex":0.00003069041,"about_ca_system_score_gemma":0.00019453287,"threshold_uncertainty_score":0.22076654},"labels":[],"label_agreement":null},{"id":"W7095556353","doi":"","title":"ARTICLE Audit of Physicians ’ Adherence to a Preprinted Order Set for Community-Acquired Pneumonia","year":2014,"lang":"en","type":"article","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Pneumonia; Audit; MEDLINE; Levofloxacin; Primary care","score_opus":0.04095043536161693,"score_gpt":0.32940523592414506,"score_spread":0.28845480056252815,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7095556353","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97287893,0.0000013230899,0.01998124,0.0018228461,0.000087166685,0.0005620606,0.000012301127,0.000099855984,0.00455428],"genre_scores_gemma":[0.99482894,6.7111125e-7,0.00087024324,0.0027548287,0.000049657403,0.00010307514,0.0000058761025,0.000014712289,0.0013720116],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99928737,0.00008503237,0.00021713146,0.00012792356,0.00009939388,0.00018312945],"domain_scores_gemma":[0.9989628,0.0001623426,0.000059698883,0.00047388353,0.00025572098,0.00008554663],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021906327,0.00009485339,0.0002366203,0.000060587336,0.00012873187,0.0000077002815,0.000096783566,0.0000490571,0.0001034839],"category_scores_gemma":[0.00036642738,0.00007821798,0.00007993251,0.00027321326,0.000062496074,0.00004138816,0.00005266697,0.00009492729,0.000094085706],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000065918124,0.00037627283,0.010248122,0.00009160748,0.00005113297,3.6453454e-7,0.00097227714,0.00009452941,0.98073506,0.00048767444,0.0013912576,0.0054858],"study_design_scores_gemma":[0.0048899837,0.008492923,0.32722098,0.0005003964,0.0002976881,0.00003836173,0.0024381476,0.010677391,0.534484,0.0012111932,0.1091919,0.0005569848],"about_ca_topic_score_codex":0.00014169623,"about_ca_topic_score_gemma":0.00021220508,"teacher_disagreement_score":0.446251,"about_ca_system_score_codex":0.000021481073,"about_ca_system_score_gemma":0.00004522735,"threshold_uncertainty_score":0.31896365},"labels":[],"label_agreement":null},{"id":"W7096827078","doi":"","title":"Peptide Mimic of Phosphorylcholine, a Dominant Epitope Found on Streptococcus pneumoniae","year":2000,"lang":"en","type":"article","venue":"PubMed Central","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Peptide; Epitope; Mimotope; Phosphorylcholine; Streptococcus pneumoniae; Peptide vaccine; Idiotype; Antibody; Peptide sequence","score_opus":0.01388340987478546,"score_gpt":0.24678106693911275,"score_spread":0.2328976570643273,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7096827078","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.986375,0.000117701195,0.0000056180797,0.000832734,0.00046197497,0.00087970647,0.00003394705,0.000062780564,0.011230561],"genre_scores_gemma":[0.9953681,0.00023564592,0.000015944273,0.0006879969,0.00044449235,0.00020045988,0.000013222203,0.000029730389,0.0030043593],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978774,0.000046089062,0.0003987364,0.00031599725,0.00028904027,0.0010727135],"domain_scores_gemma":[0.9988661,0.000052474858,0.00009048733,0.00040861967,0.000043942277,0.0005384001],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018548426,0.0002142389,0.0003768443,0.00011408393,0.000093835115,0.000016366183,0.000112657326,0.00011625726,0.0006933641],"category_scores_gemma":[0.0000826582,0.00017110008,0.00023432713,0.00024311763,0.00013246287,0.00007293571,0.00001418292,0.0002991036,0.0001411312],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008817707,0.003044674,0.6020069,0.00023329379,0.00044921666,0.0003711258,0.0009584827,0.00073749205,0.08367008,0.00045654937,0.005940023,0.3012504],"study_design_scores_gemma":[0.0019029183,0.00029101226,0.8497588,0.00007965291,0.00012224005,0.000062073355,0.00003728402,0.000068427646,0.015938397,0.00003491567,0.1315204,0.00018388935],"about_ca_topic_score_codex":0.000047241843,"about_ca_topic_score_gemma":0.00003420808,"teacher_disagreement_score":0.30106652,"about_ca_system_score_codex":0.00021091277,"about_ca_system_score_gemma":0.00017651341,"threshold_uncertainty_score":0.7591851},"labels":[],"label_agreement":null},{"id":"W7097124123","doi":"","title":"Changing Epidemiology of Invasive Pneumococcal Disease in Canada, 1998–2007: Update from the Calgary-Area Streptococcus pneumoniae Research (CASPER) Study","year":2016,"lang":"en","type":"article","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Serotype; Incidence (geometry); Epidemiology; Streptococcus pneumoniae; Vaccination; Pneumococcal disease; Outbreak","score_opus":0.07406333027736364,"score_gpt":0.3408874997047831,"score_spread":0.2668241694274195,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7097124123","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98842126,0.00015846068,0.000041869414,0.008837248,0.00030363962,0.0016895066,0.00011936472,0.000030454365,0.00039817177],"genre_scores_gemma":[0.9979432,0.00009224366,0.000004889355,0.0011439596,0.0001968152,0.00028159225,0.00001599861,0.000026859687,0.0002944352],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99623567,0.0011558065,0.0007458071,0.0005637047,0.00045735098,0.0008416468],"domain_scores_gemma":[0.9937195,0.00463995,0.00013554124,0.00087504997,0.00017755566,0.00045240019],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015669598,0.0002393805,0.0006255041,0.00031167918,0.00021690255,0.000005076956,0.00030997294,0.00009053832,0.00048307772],"category_scores_gemma":[0.0024824282,0.0001193387,0.00011883181,0.00060186285,0.00028863922,0.00007914856,0.0002606154,0.00051126163,0.0000733118],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008904595,0.00032083562,0.98651725,0.000014929481,0.00010251097,0.00033857147,0.00031144853,0.000012303864,0.010314956,0.00012160116,0.00064485666,0.0012117148],"study_design_scores_gemma":[0.0015297665,0.00030465948,0.99258256,0.00022860232,0.000065543936,0.000005290681,0.0024079732,0.00012066163,0.00041954784,0.00028603862,0.0018947072,0.00015464051],"about_ca_topic_score_codex":0.52821845,"about_ca_topic_score_gemma":0.8786598,"teacher_disagreement_score":0.35044134,"about_ca_system_score_codex":0.0006235497,"about_ca_system_score_gemma":0.0026862877,"threshold_uncertainty_score":0.5289362},"labels":[],"label_agreement":null},{"id":"W7097682269","doi":"","title":"pneumonia from the","year":2016,"lang":"en","type":"article","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Pneumonia; Disease management; Respiratory disease; MEDLINE; Bacterial pneumonia","score_opus":0.016364527673544543,"score_gpt":0.2556698668296732,"score_spread":0.23930533915612864,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7097682269","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.89077336,0.000026638574,0.00051498605,0.06961395,0.00020058213,0.00008964655,0.0000060998045,0.000098953555,0.038675804],"genre_scores_gemma":[0.9865113,0.000018601246,0.0000170253,0.005357708,0.00021604678,0.0000064846713,4.871205e-7,0.0000048298443,0.007867545],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99971503,0.000012214119,0.000059200596,0.00007266004,0.00006487294,0.00007599529],"domain_scores_gemma":[0.9996207,0.00010973768,0.000010082894,0.00019449236,0.000018917095,0.000046094272],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00003173695,0.00003860743,0.000052751755,0.000009416102,0.000057130695,0.0000044473927,0.000034534594,0.000025872157,0.0011250931],"category_scores_gemma":[0.00004246378,0.000012448948,0.000041270858,0.00004244493,0.000041902233,0.00002222827,0.000012516294,0.0000370154,0.0010461512],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000048894362,0.000028802453,0.19656736,6.460928e-7,0.000029460092,0.000007830002,0.000034725424,2.6338904e-8,0.77662003,0.0008832889,0.009423826,0.016399123],"study_design_scores_gemma":[0.0003099228,0.000039455696,0.5039011,0.000017263405,0.000020307061,0.000016000698,0.000017767026,0.0000013831635,0.005120589,0.00028867426,0.49023795,0.000029575838],"about_ca_topic_score_codex":0.00003620584,"about_ca_topic_score_gemma":0.000025649291,"teacher_disagreement_score":0.77149945,"about_ca_system_score_codex":0.0000121000185,"about_ca_system_score_gemma":0.000025430707,"threshold_uncertainty_score":0.999788},"labels":[],"label_agreement":null},{"id":"W7098005659","doi":"","title":"Population-based surveillance for invasive pneumococcal disease in homeless adults in Toronto. PloS one 4: e7255","year":2009,"lang":"en","type":"article","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Pneumococcal disease; Pneumonia; Pneumococcal pneumonia; Streptococcus pneumoniae; Pneumococcal infections; Population; Disease; Epidemiology","score_opus":0.01675914218237147,"score_gpt":0.2787790649031442,"score_spread":0.26201992272077274,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7098005659","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99566734,0.00006946777,0.000054036358,0.0021049636,0.00005700484,0.0010922354,0.000025757776,0.00007003753,0.00085916306],"genre_scores_gemma":[0.9982955,0.0000181528,0.0000645955,0.0011870163,0.00009839549,0.00013293029,0.00009972952,0.000013568395,0.00009009644],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99892855,0.000049181293,0.00032017156,0.00027427136,0.00016293007,0.00026489937],"domain_scores_gemma":[0.99927634,0.0001637114,0.000051535357,0.00022763494,0.00008626151,0.00019452827],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000107625696,0.00013980852,0.00035219124,0.00012467733,0.000043057462,0.000010918957,0.00005647548,0.000083172075,0.000109180706],"category_scores_gemma":[0.0003107616,0.00012260633,0.00008080937,0.0001878043,0.000016090455,0.0001004008,0.0000062342006,0.000105725754,0.000007892725],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045563525,0.0014271187,0.9882671,0.00013819175,0.000009194319,0.000026133528,0.000051494015,0.00017376595,0.008292673,0.00018358223,0.000012778776,0.0009623125],"study_design_scores_gemma":[0.0033847294,0.00033209458,0.9932254,0.00029384578,0.000013387572,6.13742e-7,0.000057142155,0.001963283,0.00045699786,0.00008245511,0.000037051148,0.00015302989],"about_ca_topic_score_codex":0.0011787257,"about_ca_topic_score_gemma":0.034046654,"teacher_disagreement_score":0.032867927,"about_ca_system_score_codex":0.00039132097,"about_ca_system_score_gemma":0.00019389357,"threshold_uncertainty_score":0.98357946},"labels":[],"label_agreement":null},{"id":"W7100860088","doi":"","title":"www.infecto.org.br/bjid.htm Antimicrobial Therapy for Community-Acquired Pneumonia in Adults","year":2002,"lang":"en","type":"article","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Antimicrobial; Pneumonia; Etiology; Antibiotic resistance; Infectious disease (medical specialty); Antimicrobial stewardship; MEDLINE","score_opus":0.042903693004334324,"score_gpt":0.29186182857664816,"score_spread":0.24895813557231383,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7100860088","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98682207,0.000078887104,0.0000805564,0.0028323692,0.00033469053,0.0010485417,0.000019302228,0.00022220239,0.008561361],"genre_scores_gemma":[0.99206734,0.00030594872,0.00008540378,0.0048541473,0.0001952073,0.00010894346,0.000029158946,0.000044879464,0.0023089887],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986559,0.00015093859,0.000393319,0.0002371756,0.00013218545,0.00043049274],"domain_scores_gemma":[0.9989783,0.0001757224,0.00007638895,0.0005051293,0.00011393229,0.0001504887],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024706806,0.00024591922,0.00041314765,0.00026088028,0.00033621394,0.000024890947,0.00014454905,0.00020096822,0.0006592063],"category_scores_gemma":[0.00008939638,0.00019667987,0.00020618494,0.00037295447,0.00012249958,0.00012435766,0.00003935364,0.00036061835,0.00027918819],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032024656,0.0027748023,0.18562157,0.0001907213,0.000110734785,0.00003107941,0.00149999,0.000013698511,0.79663426,0.0001317897,0.007350709,0.005320367],"study_design_scores_gemma":[0.033581294,0.0058390936,0.60301155,0.000914815,0.00012538972,0.00046256764,0.00070940395,0.0037719656,0.07695548,0.000102339356,0.27323437,0.0012917181],"about_ca_topic_score_codex":0.00026087367,"about_ca_topic_score_gemma":0.0003515598,"teacher_disagreement_score":0.7196788,"about_ca_system_score_codex":0.00008350652,"about_ca_system_score_gemma":0.00004203201,"threshold_uncertainty_score":0.80203724},"labels":[],"label_agreement":null},{"id":"W7111995045","doi":"","title":"Global, regional, and national incidence and mortality burden of non-COVID-19 lower respiratory infections and aetiologies, 1990–2021: a systematic analysis from the Global Burden of Disease Study 2021","year":2024,"lang":"","type":"article","venue":"ResearchOnline - JCU (James Cook University)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Lingnan University; Shiraz University; Kwame Nkrumah University of Science and Technology; Mashhad University of Medical Sciences; Shiraz University of Medical Sciences; Khalifa University of Science, Technology and Research; Jordan University of Science and Technology; Yarmouk University; Universität Basel; Department of Health and Social Care; University of Patras; Cooperative Research Centre for Contamination Assessment and Remediation of the Environment; York University; Wellcome Trust; Western Sydney University; Shahid Beheshti University of Medical Sciences; COMSATS Institute of Information Technology; School of Medicine, Indiana University; Università di Catania; Tehran University of Medical Sciences and Health Services; Johns Hopkins University; Bill and Melinda Gates Foundation","keywords":"Incidence (geometry); Transmission (telecommunications); Pneumonia; Pandemic; Disease burden; Epidemiology; Public health; Psychological intervention; Etiology","score_opus":0.04850769583042436,"score_gpt":0.36170412574142485,"score_spread":0.3131964299110005,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7111995045","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97888184,0.012628251,0.00049697934,0.0029549082,0.00016327525,0.0018824061,0.0026477005,0.0000342006,0.00031046668],"genre_scores_gemma":[0.9933018,0.0057423026,0.000017771305,0.00012793482,0.00029980997,0.00001440529,0.00006400331,0.000013703092,0.00041825208],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9948073,0.0015996277,0.00081058795,0.0010208435,0.0013295138,0.00043211837],"domain_scores_gemma":[0.9946,0.002506703,0.00034366007,0.00081557204,0.0008537085,0.00088033563],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0015424,0.00041732503,0.0010815389,0.0009822954,0.000738321,0.000177794,0.0004148384,0.0002361789,0.00023443824],"category_scores_gemma":[0.0034195944,0.00033927956,0.0003454703,0.0051910034,0.002611188,0.00038057516,0.000887243,0.00052761345,0.00000589208],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00079799,0.0011554617,0.9693723,0.007867213,0.011080838,0.0011707029,0.00220558,0.0031235237,0.00039021438,0.0014861854,0.0010371039,0.00031293376],"study_design_scores_gemma":[0.0049818056,0.003613808,0.86308944,0.007794752,0.021423334,0.000050822237,0.034850698,0.03207285,0.0000034983477,0.0010914911,0.030087113,0.00094038324],"about_ca_topic_score_codex":0.010449737,"about_ca_topic_score_gemma":0.0033744285,"teacher_disagreement_score":0.10628281,"about_ca_system_score_codex":0.0009316105,"about_ca_system_score_gemma":0.0042286343,"threshold_uncertainty_score":0.99990594},"labels":[],"label_agreement":null},{"id":"W7116664730","doi":"10.64898/2025.12.18.695090","title":"A reusable model of pangenome selection informs optimal surveillance strategies over vaccine introductions","year":2025,"lang":"","type":"article","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"European Molecular Biology Laboratory","keywords":"Vaccination; Selection (genetic algorithm); Pneumococcal conjugate vaccine; Streptococcus pneumoniae; Pneumococcal disease; Herd immunity; Pneumococcal vaccine","score_opus":0.009587694814771614,"score_gpt":0.23609361190724773,"score_spread":0.2265059170924761,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7116664730","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.980221,0.0014140825,0.013043859,0.0010780933,0.0023321519,0.0011240289,0.00021808791,0.0003623055,0.00020642651],"genre_scores_gemma":[0.9964985,0.0010875969,0.0008722732,0.00029435157,0.0008381321,0.0001376795,3.8214176e-7,0.00008732535,0.00018373944],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9962759,0.00013270916,0.0013041329,0.0009074967,0.00045616404,0.00092357676],"domain_scores_gemma":[0.9963126,0.000097140226,0.00056325836,0.0012304356,0.0014689974,0.00032757016],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00079068943,0.0006666621,0.0010442948,0.0010260384,0.00058274146,0.00017907603,0.00034220197,0.0005642492,0.00020862896],"category_scores_gemma":[0.0004282028,0.00066641055,0.00028416232,0.003458976,0.00024820465,0.0008610357,0.00016148621,0.0008264844,0.000053588417],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018134971,0.0005719702,0.052612506,0.00076475303,0.00068838865,0.0000046416735,0.000024019531,0.01906163,0.91988385,0.0051445817,0.0010589793,0.0000033266344],"study_design_scores_gemma":[0.005387535,0.0011477936,0.6193698,0.0010693013,0.0011770761,2.7147289e-7,0.00010542077,0.0670994,0.27179074,0.000011794784,0.03125895,0.0015818954],"about_ca_topic_score_codex":0.00010098741,"about_ca_topic_score_gemma":0.000024823186,"teacher_disagreement_score":0.6480931,"about_ca_system_score_codex":0.00058789883,"about_ca_system_score_gemma":0.0032199773,"threshold_uncertainty_score":0.9995787},"labels":[],"label_agreement":null},{"id":"W7119105343","doi":"10.3201/eid3112.250872","title":"Macrolide Resistance and P1 Cytadhesin Genotyping of <i>Mycoplasma pneumoniae</i> during Outbreak, Canada, 2024–2025","year":2025,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Genotyping; Genotype; Mycoplasma pneumoniae; Molecular epidemiology; Outbreak; Macrolide Antibiotics; Drug resistance","score_opus":0.0035738131717393067,"score_gpt":0.23388813021760613,"score_spread":0.23031431704586683,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7119105343","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98339236,0.0023050602,0.000060322975,0.00096517056,0.0006971708,0.000303338,0.00007318697,0.00015052024,0.012052848],"genre_scores_gemma":[0.99253535,0.00027583766,0.00000993571,0.0007044548,0.00010234933,0.00004464845,0.000007350442,0.000025866831,0.006294205],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99856615,0.00006115209,0.00041707902,0.00036926536,0.0002276343,0.00035873865],"domain_scores_gemma":[0.99906987,0.00012638519,0.00013281914,0.0003413511,0.00012748277,0.0002020921],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000070548456,0.00024222382,0.00042720945,0.00029168942,0.00041531186,0.000027210714,0.000072130715,0.00007539513,0.00006088248],"category_scores_gemma":[0.00021374706,0.00024144922,0.0001223276,0.00054722617,0.00011591181,0.00008591886,0.00008199685,0.00021237292,0.000003410658],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000070889604,0.00015101445,0.9563118,0.0011791227,0.00028222977,0.000110017536,0.00008384016,0.00018801208,0.036672454,0.00035513414,0.0039451476,0.0006503288],"study_design_scores_gemma":[0.002793349,0.00009857814,0.9070183,0.0015377313,0.00092728325,0.00020008888,0.00024742095,0.00012152012,0.00859694,0.00034681056,0.07756693,0.0005450708],"about_ca_topic_score_codex":0.019724179,"about_ca_topic_score_gemma":0.11266842,"teacher_disagreement_score":0.09294424,"about_ca_system_score_codex":0.00025009917,"about_ca_system_score_gemma":0.0008158897,"threshold_uncertainty_score":0.9868036},"labels":[],"label_agreement":null},{"id":"W7123749812","doi":"10.14745/ccdr.v51i1011a01","title":"Summary of the National Advisory Committee on Immunization (NACI) Statement: Recommendations on the use of pneumococcal vaccines in adults, including Pneu-C-21.","year":2025,"lang":"en","type":"article","venue":"PubMed","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia; McGill University; Public Health Agency of Canada","funders":"","keywords":"Immunization; Advisory committee; Pneumococcal vaccination; Vaccination; Pneumococcal disease; Pneumococcal vaccine; Pneumococcal infections","score_opus":0.0790008023544517,"score_gpt":0.301842690765962,"score_spread":0.22284188841151029,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7123749812","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9576246,0.000028569559,0.000026254393,0.034818176,0.00038684774,0.0015036192,0.00006971469,0.000026227914,0.0055159773],"genre_scores_gemma":[0.9965314,0.000101155376,0.0000088506795,0.0021140971,0.00003175695,0.0005113209,0.000032163072,0.000009714475,0.0006595019],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99872774,0.000246095,0.00048223953,0.00014118623,0.00024483388,0.00015788956],"domain_scores_gemma":[0.99867,0.00063321827,0.00019311577,0.00027104293,0.00020409258,0.000028533403],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004649671,0.000110194786,0.00018140639,0.00031818767,0.0001756283,0.0000105882555,0.00014234573,0.00006329829,0.000020139432],"category_scores_gemma":[0.0009511751,0.0000675832,0.00008474066,0.0007381618,0.000064747685,0.00009545993,0.00008862935,0.0002763249,0.0000016454323],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009792546,0.0039971573,0.8373732,0.00057614926,0.0005515185,0.0000026404236,0.001305461,0.004393189,0.014528519,0.03226378,0.035109024,0.06892013],"study_design_scores_gemma":[0.0009944037,0.000054300275,0.96039295,0.00044104183,0.000033788147,0.0000010912377,0.00014297475,0.0002963152,0.0030418863,0.0002741668,0.034264274,0.00006281514],"about_ca_topic_score_codex":0.000043030548,"about_ca_topic_score_gemma":0.00009711528,"teacher_disagreement_score":0.12301976,"about_ca_system_score_codex":0.00017225296,"about_ca_system_score_gemma":0.00010096986,"threshold_uncertainty_score":0.27559626},"labels":[],"label_agreement":null},{"id":"W7131826822","doi":"10.5376/jvr.2025.15.0009","title":"Comparative Effectiveness of Different Pneumococcal Vaccines in Elderly","year":2025,"lang":"","type":"article","venue":"Journal of Vaccine Research","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Pneumococcal vaccine; Vaccination; Disease; MEDLINE; Streptococcus pneumoniae","score_opus":0.06532765744010728,"score_gpt":0.4485210484590141,"score_spread":0.3831933910189068,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7131826822","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9867016,0.0056099216,0.00014959514,0.0025400696,0.0011993322,0.0012151644,0.000007731324,0.0000064128253,0.0025701807],"genre_scores_gemma":[0.99693376,0.0021172003,0.000008306901,0.000021576667,0.00041775507,0.000027718654,0.0000016584945,0.000024249808,0.0004477841],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99098355,0.0042074835,0.0022481838,0.00040398593,0.001269353,0.00088745594],"domain_scores_gemma":[0.9894815,0.0055177324,0.0006082169,0.0005331143,0.0034663086,0.00039309636],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0070310226,0.00041511728,0.002516462,0.0044985525,0.00022555685,0.00005799994,0.0005924824,0.00036582278,0.000229392],"category_scores_gemma":[0.0015961333,0.00029785503,0.00056006486,0.0034345498,0.00016417576,0.00025683234,0.00027707257,0.0034905947,0.0000180419],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0051596756,0.0045555765,0.43518436,0.002925251,0.0010555726,0.00031752314,0.00054187374,0.00020830339,0.5456829,0.0006854017,0.0006061499,0.003077432],"study_design_scores_gemma":[0.010355919,0.008583868,0.88471884,0.009835005,0.00026559056,0.00016607331,0.001356835,0.00024619274,0.08171414,0.0012672215,0.0013058602,0.00018447744],"about_ca_topic_score_codex":0.000072566814,"about_ca_topic_score_gemma":0.00011380224,"teacher_disagreement_score":0.46396875,"about_ca_system_score_codex":0.000783143,"about_ca_system_score_gemma":0.0020268902,"threshold_uncertainty_score":0.99994737},"labels":[],"label_agreement":null},{"id":"W7131920467","doi":"","title":"The structural basis for T-antigen hydrolysis by Streptococcus pneumoniae: A target for structure-based vaccine design communication","year":2008,"lang":"en","type":"article","venue":"NPARC","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Hydrolysis; Streptococcus; Basis (linear algebra); Bacteria; Quality (philosophy)","score_opus":0.021072552279615152,"score_gpt":0.27511371243018035,"score_spread":0.2540411601505652,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7131920467","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94436914,0.00039303437,0.03752679,0.012120118,0.00023497455,0.004376033,0.00052229303,0.0001963472,0.00026124605],"genre_scores_gemma":[0.99275315,0.000050329447,0.005254233,0.0006314486,0.000112838774,0.0006745073,0.00018011298,0.000043146996,0.00030024326],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986807,0.000112636415,0.00036153494,0.00027278974,0.0002034303,0.00036891326],"domain_scores_gemma":[0.998039,0.000736474,0.00016389826,0.00068005815,0.00024179318,0.0001387485],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00022365416,0.00021892793,0.0003261128,0.00008429236,0.0013347081,0.000032179858,0.00024100022,0.0001342985,0.00011457021],"category_scores_gemma":[0.0002877454,0.00014506199,0.00024110994,0.00021524684,0.00010692083,0.00007230949,0.00002371004,0.00018741022,0.0000034135817],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003987474,0.00009809757,0.027623206,0.00006427202,0.00034063318,0.0000027704466,0.00021498647,0.0005612441,0.93099815,0.00020864245,0.033579107,0.0059101754],"study_design_scores_gemma":[0.014238631,0.0036777996,0.07150112,0.00013689493,0.0009991657,0.00012147395,0.0002302251,0.100982524,0.43584037,0.011670014,0.3593981,0.0012036933],"about_ca_topic_score_codex":0.000006548776,"about_ca_topic_score_gemma":0.000015816031,"teacher_disagreement_score":0.49515775,"about_ca_system_score_codex":0.00009350989,"about_ca_system_score_gemma":0.00020877249,"threshold_uncertainty_score":0.9999654},"labels":[],"label_agreement":null},{"id":"W7132935287","doi":"","title":"Immunogenicity of pneumococcal vaccination in renal transplant recipients","year":2004,"lang":"","type":"dissertation","venue":"TSpace","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; Physicians' Services Incorporated Foundation","keywords":"Immunogenicity; Titer; Vaccination; Pneumococcal conjugate vaccine; Immunosuppression; Conjugate vaccine; Serotype; Antibody titer; Antibody","score_opus":0.01830921938041293,"score_gpt":0.34333130958643154,"score_spread":0.32502209020601863,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7132935287","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9900657,0.00076551706,0.00011355996,0.00029277612,0.0016794442,0.001188786,0.000038694132,0.000039867264,0.005815668],"genre_scores_gemma":[0.9948858,0.0012796958,0.00001948188,0.000039069124,0.00016845572,0.000083046856,0.0005892114,0.00006434782,0.0028709131],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99665385,0.0002179914,0.0012719333,0.000639799,0.0006468989,0.00056954054],"domain_scores_gemma":[0.99815094,0.000108552595,0.00068250403,0.00050570135,0.00034323722,0.00020906705],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004729172,0.000560998,0.0010433018,0.0009043665,0.00016745692,0.0000178291,0.00023899617,0.00091584737,0.0008818085],"category_scores_gemma":[0.00014749428,0.00056116754,0.00044099143,0.0009954778,0.000064880725,0.00013155543,0.000018936824,0.0012087774,0.000095104675],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013325736,0.0017471821,0.047531646,0.00081597123,0.00031690922,0.00015847052,0.024421925,0.00075222173,0.91979307,0.000170881,0.000009678368,0.0029494795],"study_design_scores_gemma":[0.0051273,0.0009815805,0.8794612,0.004091599,0.0006100486,0.000084216226,0.0018457314,0.00012865647,0.10670305,0.00007972932,0.00039061595,0.0004962435],"about_ca_topic_score_codex":0.0011025143,"about_ca_topic_score_gemma":0.0014520648,"teacher_disagreement_score":0.83192956,"about_ca_system_score_codex":0.00074746716,"about_ca_system_score_gemma":0.0011390505,"threshold_uncertainty_score":0.999684},"labels":[],"label_agreement":null},{"id":"W7132985806","doi":"","title":"The Economic Evaluation of Adult Immunization Programs: The Importance of Local Context and the Example of Pneumococcal Vaccination","year":2022,"lang":"","type":"dissertation","venue":"TSpace","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Vaccination; Pneumococcal conjugate vaccine; Context (archaeology); Health care; Disease; Psychological intervention; Public health; Economic evaluation; Incidence (geometry)","score_opus":0.024629661346119217,"score_gpt":0.34403685480402796,"score_spread":0.31940719345790874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7132985806","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9874823,0.0048882007,0.00016881789,0.0014350232,0.0007617727,0.0039794147,0.00001785897,0.000012684139,0.0012539346],"genre_scores_gemma":[0.9964075,0.0021051448,0.0000024056103,0.00004843337,0.00007995412,0.00061066705,0.00028740164,0.000038904735,0.00041955296],"study_design_codex":"design_other","study_design_gemma":"qualitative","domain_scores_codex":[0.9958366,0.0014031889,0.0013421976,0.000355699,0.0008171371,0.00024513502],"domain_scores_gemma":[0.99380964,0.001168933,0.0025466299,0.000862061,0.0015619165,0.000050789953],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0038302636,0.00031601143,0.00066995475,0.00013346283,0.00074688706,0.000030792056,0.00035916342,0.00021529575,0.00036397477],"category_scores_gemma":[0.0006578168,0.00017558197,0.00025914438,0.00043865468,0.00074586074,0.00010342701,0.00008268317,0.0005482353,0.0000024764886],"study_design_candidate":"qualitative","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006124834,0.001219563,0.06578195,0.0026191962,0.003374402,0.0000016249926,0.16077223,0.01214562,0.04025858,0.12863179,0.00022196854,0.57884824],"study_design_scores_gemma":[0.016723016,0.0025325078,0.34513676,0.0009062348,0.0067842472,0.000051169274,0.4785655,0.12061802,0.018661652,0.002024385,0.0073449877,0.0006514835],"about_ca_topic_score_codex":0.0036424324,"about_ca_topic_score_gemma":0.0053381147,"teacher_disagreement_score":0.57819676,"about_ca_system_score_codex":0.00034716158,"about_ca_system_score_gemma":0.0012391993,"threshold_uncertainty_score":0.71600246},"labels":[],"label_agreement":null},{"id":"W7133004538","doi":"","title":"The association between socioeconomic status and mortality after community-acquired pneumonia in the elderly in Ontario: a population-based cohort study using frequentist and bayesian statistical methods","year":2003,"lang":"","type":"dissertation","venue":"TSpace","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Socioeconomic status; Odds; Odds ratio; Frequentist inference; Pneumonia; Cohort study; Comorbidity; Population; Logistic regression","score_opus":0.03403693621678457,"score_gpt":0.3964461236529099,"score_spread":0.3624091874361253,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7133004538","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99517465,0.0002391455,0.00040320566,0.00019056602,0.00042874008,0.0033134373,0.0000630983,0.00001722492,0.00016990719],"genre_scores_gemma":[0.9983798,0.000047509635,0.00025678633,0.00015084268,0.00004469435,0.00036690247,0.00043743197,0.000056391425,0.00025963175],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9881272,0.008737878,0.0012842852,0.0006073829,0.00049458543,0.00074870087],"domain_scores_gemma":[0.9942376,0.003943106,0.0007771963,0.0006993659,0.00013403062,0.00020872054],"candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.007001714,0.00058627734,0.0011224169,0.00030801515,0.0014032951,0.0003907021,0.00017659274,0.0005594984,0.00009460847],"category_scores_gemma":[0.0006124384,0.00046475162,0.00010822059,0.00026594684,0.00019885003,0.00016042501,0.000037303387,0.0021333164,0.0000024616559],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008952644,0.00041711767,0.97409093,0.00011242923,0.00044495412,0.00002181888,0.023837827,0.00003346874,0.00019016762,0.000026135374,0.0000017685088,0.0007338479],"study_design_scores_gemma":[0.002157529,0.00055168907,0.9671017,0.00015044205,0.0015314774,0.0000035865742,0.027233824,0.00046359617,0.0000047721956,0.0003175692,0.00007777172,0.0004060699],"about_ca_topic_score_codex":0.49734244,"about_ca_topic_score_gemma":0.87677175,"teacher_disagreement_score":0.3794293,"about_ca_system_score_codex":0.002974854,"about_ca_system_score_gemma":0.0010055067,"threshold_uncertainty_score":0.99989676},"labels":[],"label_agreement":null},{"id":"W7133040793","doi":"","title":"Leveraging Population-Based Modelling Approaches to Inform Respiratory Disease Prevention","year":2025,"lang":"","type":"dissertation","venue":"TSpace","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Connaught Fund; University of Toronto","keywords":"Vaccination; Pneumococcal conjugate vaccine; Incidence (geometry); Disease; Transmission (telecommunications); Respiratory system; Pneumococcal disease; Respiratory disease; Cohort; Epidemiology","score_opus":0.18961472522679926,"score_gpt":0.37323839992298546,"score_spread":0.1836236746961862,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7133040793","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8896427,0.0012436274,0.08533653,0.0032291508,0.0028202645,0.004458643,0.000034847722,0.0003997096,0.012834526],"genre_scores_gemma":[0.95688075,0.000027273476,0.00042165723,0.0017411239,0.0005737966,0.0006161448,0.0016775087,0.00011258824,0.03794917],"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99594206,0.00021193546,0.0011421653,0.0010621465,0.00089187437,0.0007498158],"domain_scores_gemma":[0.9969943,0.00019203704,0.0005464076,0.0010312614,0.00033246053,0.00090354617],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00057464855,0.000837979,0.00087171793,0.0015449584,0.0011783299,0.00016814526,0.00027217704,0.0005849675,0.00029280537],"category_scores_gemma":[0.00036511148,0.0008998045,0.00061348313,0.0015864066,0.00003261434,0.00024071083,0.000055490767,0.0009719511,0.00018943644],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010609445,0.00081892253,0.034372676,0.005126053,0.00042896348,0.000039860694,0.0073718955,0.9348822,0.0008871068,0.0012591113,0.00030986962,0.013442394],"study_design_scores_gemma":[0.0063457433,0.0012728015,0.19232982,0.021031983,0.0062015723,0.0000038350627,0.015630998,0.6690368,0.0022951555,0.0009731215,0.08078343,0.0040947064],"about_ca_topic_score_codex":0.00030221377,"about_ca_topic_score_gemma":0.000119210665,"teacher_disagreement_score":0.26584536,"about_ca_system_score_codex":0.0008075166,"about_ca_system_score_gemma":0.002898822,"threshold_uncertainty_score":0.99934524},"labels":[],"label_agreement":null},{"id":"W7135925524","doi":"","title":"What is Missing?","year":2010,"lang":"en","type":"article","venue":"Bristol Research (University of Bristol)","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Fulminant; Epidemiology; Disease; Pneumococcal disease; Pneumococcal conjugate vaccine; Population; Serotype","score_opus":0.05186754292343543,"score_gpt":0.3494246068124607,"score_spread":0.29755706388902525,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7135925524","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95853925,0.00026865007,0.000193345,0.021506025,0.00044130711,0.00034585193,0.000015456348,0.00007743822,0.018612701],"genre_scores_gemma":[0.9805071,0.00033208387,0.00040402965,0.0003006818,0.00010708442,4.7419954e-7,0.000008563268,0.000019045403,0.018320981],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983624,0.00010124426,0.00012744477,0.0003286094,0.00069209974,0.00038818226],"domain_scores_gemma":[0.9981547,0.00011010487,0.000072843344,0.00057609344,0.00067496544,0.00041130185],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006321648,0.000107772685,0.00027815596,0.00048048855,0.0005941263,0.00004805763,0.00029726714,0.0002012281,0.0010958759],"category_scores_gemma":[0.00016077873,0.00012450319,0.0001837603,0.0006421882,0.0009928228,0.0004049489,0.00015521898,0.0009819492,0.0004145039],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003438722,0.0011981117,0.031519476,0.00039669208,0.00022071761,0.0011629,0.0036332977,8.3155896e-7,0.6532489,0.00089797896,0.18476671,0.12261053],"study_design_scores_gemma":[0.0011680429,0.00036007594,0.04481264,0.00014690656,0.000056951554,0.00023375901,0.0045262766,0.00018800444,0.0025097495,0.00035399254,0.945472,0.00017157359],"about_ca_topic_score_codex":0.0005974646,"about_ca_topic_score_gemma":0.00032938633,"teacher_disagreement_score":0.76070535,"about_ca_system_score_codex":0.00010441727,"about_ca_system_score_gemma":0.0005056745,"threshold_uncertainty_score":0.99981725},"labels":[],"label_agreement":null},{"id":"W7136063957","doi":"10.1183/13993003/erj.42.suppl_57.377","title":"Improving the diagnosis of pediatric pneumonia at village level: Testing the accuracy of smart phone applications measuring respiratory rate and O <sub>2</sub> saturation","year":2013,"lang":"en","type":"article","venue":"European Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital","funders":"","keywords":"Auscultation; Smart phone; Respiratory rate; Phone; Pneumonia; Respiratory system","score_opus":0.06380277337629414,"score_gpt":0.2570550609169718,"score_spread":0.19325228754067764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7136063957","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99567467,0.0018275161,0.0002686975,0.00037052823,0.00016305811,0.0008849532,0.0000099868785,0.000051620642,0.0007489589],"genre_scores_gemma":[0.99740976,0.00024240953,0.00004774858,0.0011287205,0.0009952865,0.000087012995,8.701513e-7,0.00007014906,0.00001802899],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.996681,0.0010665972,0.0010820824,0.000325079,0.0004812582,0.0003640219],"domain_scores_gemma":[0.9959775,0.001124402,0.0012659732,0.00061954366,0.0007666506,0.0002459035],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026924745,0.0002872222,0.0003558934,0.0002911403,0.001164818,0.000119840406,0.00031753856,0.00007869747,0.000025420377],"category_scores_gemma":[0.0019882303,0.00017454442,0.00018296433,0.0007150411,0.0003094947,0.0003328857,0.0002284025,0.0007881276,0.000069984475],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023888173,0.000070931834,0.1055346,0.000101556485,0.00005977197,0.00001688534,0.00023747426,0.000042167387,0.8622489,0.000009042247,0.000567074,0.031087717],"study_design_scores_gemma":[0.0009995422,0.00039065618,0.84943885,0.0001331166,0.00031535412,0.00026120048,0.00021913889,0.000060924664,0.13788874,0.000018508865,0.010032507,0.00024145571],"about_ca_topic_score_codex":0.00001051022,"about_ca_topic_score_gemma":0.000011526175,"teacher_disagreement_score":0.74390423,"about_ca_system_score_codex":0.000108823915,"about_ca_system_score_gemma":0.00026199908,"threshold_uncertainty_score":0.8958956},"labels":[],"label_agreement":null},{"id":"W80494079","doi":"10.1093/pch/16.7.417","title":"Pneumonia in healthy Canadian children and youth: Practice points for management","year":2011,"lang":"en","type":"article","venue":"Paediatrics & Child Health","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Canadian Paediatric Society","funders":"","keywords":"Medicine; Pneumonia; Chest radiograph; Empyema; Streptococcus pneumoniae; Amoxicillin; Incidence (geometry); Pediatrics; Intensive care medicine; Atypical pneumonia; Bacterial pneumonia; Ampicillin; Radiography; Surgery; Internal medicine; Antibiotics","score_opus":0.023934343321093416,"score_gpt":0.28734988123489913,"score_spread":0.26341553791380573,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W80494079","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.74290985,0.010879529,0.0004671421,0.17963025,0.0020655592,0.012022703,0.0010490619,0.0003480052,0.050627902],"genre_scores_gemma":[0.9533921,0.0060546394,0.0018159664,0.038128667,0.00036312515,0.000064806874,0.00010575977,0.000044332053,0.00003061036],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99826276,0.00008986967,0.00042818952,0.00038503567,0.00016905031,0.0006650776],"domain_scores_gemma":[0.9985738,0.00006278681,0.00015966606,0.0002732304,0.00006909804,0.00086145126],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00079355267,0.00017717124,0.00030824757,0.0006500184,0.00035159755,0.000014391376,0.00007776951,0.00011266702,0.000011055667],"category_scores_gemma":[0.00014295947,0.00016897454,0.000062081584,0.0004684511,0.000033656674,0.00010609304,0.00003089056,0.0003656192,0.000022136528],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047998576,0.0009295682,0.9454879,0.00068425055,0.00018562912,0.00006813367,0.010484009,0.0000036734718,0.0000018685633,0.010250485,0.00256477,0.02885972],"study_design_scores_gemma":[0.002316506,0.0009811854,0.97835386,0.000059403166,0.00011197379,0.00014836028,0.0004944482,0.000011864004,8.499068e-7,0.00015839076,0.017185325,0.00017786417],"about_ca_topic_score_codex":0.06430938,"about_ca_topic_score_gemma":0.03720644,"teacher_disagreement_score":0.21048225,"about_ca_system_score_codex":0.00046231932,"about_ca_system_score_gemma":0.00070473045,"threshold_uncertainty_score":0.98036206},"labels":[],"label_agreement":null},{"id":"W80697547","doi":"10.1007/0-306-46834-4_6","title":"Imaging Community-Acquired Pneumonia","year":2002,"lang":"en","type":"book-chapter","venue":"","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen Elizabeth II Health Sciences Centre","funders":"","keywords":"Pneumonia; Community-acquired pneumonia; Medicine; Intensive care medicine; Internal medicine","score_opus":0.03938560753579861,"score_gpt":0.2695698356009408,"score_spread":0.23018422806514216,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W80697547","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0003248195,0.00022969549,0.000038646718,0.0018531576,0.00034802372,0.00028586673,0.000015435335,0.00037648555,0.99652785],"genre_scores_gemma":[0.027459582,0.00022347544,0.000036026828,0.0045458814,0.00032655502,0.000010492822,0.000046806676,0.00010590482,0.9672453],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","domain_scores_codex":[0.99893683,0.000031715655,0.00033761462,0.00021208436,0.0002383061,0.00024344191],"domain_scores_gemma":[0.99869645,0.00006877521,0.00011348383,0.0007946457,0.00011845439,0.00020821439],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00011431611,0.0003494433,0.0005025784,0.0002675064,0.0003493428,0.000028371504,0.00012777348,0.0002632252,0.006083812],"category_scores_gemma":[0.000020806578,0.00029389118,0.00029567932,0.0000320172,0.00018540272,0.000052630425,0.00009301786,0.0008765424,0.0020942278],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015787661,0.002208833,0.015374555,0.002752527,0.003959305,0.00531572,0.0024099736,0.000010346275,0.15775007,0.32212508,0.30712417,0.18081154],"study_design_scores_gemma":[0.0004847856,0.0001310152,0.00091628265,0.00031252034,0.00026831048,0.0006768013,0.000023744144,0.000039180126,0.00006242234,0.0011224992,0.995631,0.00033146277],"about_ca_topic_score_codex":0.00003135679,"about_ca_topic_score_gemma":0.000013974905,"teacher_disagreement_score":0.6885068,"about_ca_system_score_codex":0.00011744038,"about_ca_system_score_gemma":0.000060633665,"threshold_uncertainty_score":0.9999513},"labels":[],"label_agreement":null},{"id":"W83633977","doi":"10.1155/2005/628367","title":"Determinants of Hospital Length of Stay among Patients with Pneumonia Admitted to a Large Canadian Hospital from 1991 to 2001","year":2005,"lang":"en","type":"article","venue":"Canadian Respiratory Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Centre for Advancing Health Outcomes; University of British Columbia","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC; Vancouver Foundation","keywords":"Medicine; Pneumonia; Emergency medicine; Intensive care medicine; Medical emergency; Internal medicine","score_opus":0.00773327032521786,"score_gpt":0.2344417585378989,"score_spread":0.22670848821268103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W83633977","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99634975,0.000063329106,0.000008033875,0.00070166547,0.00050012313,0.00078567193,0.0010973216,0.00001568873,0.00047840757],"genre_scores_gemma":[0.99578345,0.000003547305,0.00014045862,0.0034931423,0.00037904189,0.000021525175,0.00001813173,0.0000672597,0.00009344662],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99716026,0.000088514505,0.00075752527,0.0003736125,0.0005219816,0.0010980823],"domain_scores_gemma":[0.9929852,0.00003325083,0.00030207477,0.0004927297,0.00074827333,0.005438483],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000281393,0.0003387931,0.00061952067,0.0013579733,0.00033051442,0.000042893025,0.00030909004,0.00022108584,0.00047660535],"category_scores_gemma":[0.00027427656,0.0002961409,0.00016484219,0.00067387044,0.000112249174,0.00025277372,0.000029562856,0.0005342944,0.00006970053],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043564523,0.00022226087,0.9915911,0.000011435299,0.00013276824,0.0003323729,0.00081884314,0.00002938156,0.0005466863,0.0000036858853,0.0035588064,0.002709125],"study_design_scores_gemma":[0.0016904476,0.0028760624,0.890036,0.00026808618,0.0001055843,0.000012528727,0.0002353981,0.0000110474975,0.00047683297,0.000002297519,0.103956856,0.00032884828],"about_ca_topic_score_codex":0.20706323,"about_ca_topic_score_gemma":0.9340041,"teacher_disagreement_score":0.7269409,"about_ca_system_score_codex":0.0010983283,"about_ca_system_score_gemma":0.0036704214,"threshold_uncertainty_score":0.9999491},"labels":[],"label_agreement":null},{"id":"W848751133","doi":"10.1097/01.epx.0000465234.31794.b1","title":"Pneumococcal infection among hospitalized Egyptian children","year":2015,"lang":"en","type":"article","venue":"Journal of the Egyptian Public Health Association","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pediatric Oncology Group","funders":"Cairo University","keywords":"Medicine; Streptococcus pneumoniae; Case fatality rate; Pediatrics; Incidence (geometry); Pneumonia; Population; Pneumococcal pneumonia; Pneumococcal infections; Referral; Epidemiology; Internal medicine; Antibiotics; Environmental health; Biology","score_opus":0.03464597318273317,"score_gpt":0.3043546197613481,"score_spread":0.26970864657861493,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W848751133","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.89268476,0.00005580935,0.00019520374,0.10364456,0.0020089413,0.00042366545,0.0000054678135,0.000049585455,0.0009319909],"genre_scores_gemma":[0.99444515,0.00006570569,0.00004528645,0.0035046516,0.0012117026,0.000007651856,0.0000073384153,0.000024661134,0.0006878502],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99705243,0.00059356657,0.00086219923,0.00013989088,0.00089295296,0.00045893205],"domain_scores_gemma":[0.99608845,0.00005546627,0.0018948807,0.00024807436,0.0008830947,0.0008300655],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0036949725,0.0001593085,0.00044702357,0.0003233984,0.000302065,0.00010041958,0.00015391469,0.00022650404,0.000027509692],"category_scores_gemma":[0.0026241043,0.00010789934,0.0003570784,0.0006879392,0.0000455594,0.0005132426,0.000042159805,0.0007968028,0.000030630814],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013033025,0.0002368207,0.9824784,0.00001511996,0.00017609003,0.0000022163183,0.00047629242,0.00002485021,0.00013873538,0.0000330923,0.014785723,0.0016196414],"study_design_scores_gemma":[0.0019172999,0.0005752555,0.95206225,0.000070063375,0.000066049644,0.00020267563,0.00005147066,0.000052092746,0.000022369935,0.00009855299,0.04478934,0.00009256967],"about_ca_topic_score_codex":0.00015032287,"about_ca_topic_score_gemma":0.00007388397,"teacher_disagreement_score":0.10176037,"about_ca_system_score_codex":0.0028266879,"about_ca_system_score_gemma":0.0022408944,"threshold_uncertainty_score":0.73916906},"labels":[],"label_agreement":null},{"id":"W891342003","doi":"10.20452/pamw.2971","title":"Corticosteroids in the treatment of community-acquired pneumonia: an evidence summary","year":2015,"lang":"en","type":"review","venue":"Polskie Archiwum Medycyny Wewnętrznej","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University of Toronto","funders":"","keywords":"Medicine; Pneumonia; Randomized controlled trial; Adverse effect; Community-acquired pneumonia; Corticosteroid; Intensive care medicine; Clinical trial; Internal medicine","score_opus":0.27375807733302904,"score_gpt":0.44926611884693224,"score_spread":0.1755080415139032,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W891342003","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0041320547,0.9889042,0.000007843833,0.0005351288,0.0004408116,0.0028874516,0.00012160477,0.00009640631,0.0028744938],"genre_scores_gemma":[0.0025096314,0.9952509,0.00005548804,0.00042537946,0.00035317012,0.0007107821,0.0002646364,0.000108599656,0.00032140728],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.993149,0.0034355258,0.0014988971,0.0004543379,0.0007670067,0.00069523236],"domain_scores_gemma":[0.99474454,0.0015318946,0.00059263746,0.002521099,0.00015771415,0.00045210795],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0014090729,0.00081848435,0.0030708231,0.0007009507,0.00027757455,0.00005006469,0.00089280854,0.00040822072,0.000026231979],"category_scores_gemma":[0.0003232142,0.00048559124,0.00084142433,0.00094942184,0.0005460505,0.00021347645,0.00013163766,0.0009775432,0.0000796375],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006235542,0.003498898,0.00045505926,0.0059308517,0.0003269254,0.00015789572,0.005531551,8.5984703e-7,0.00019252537,0.000106726875,0.00023356696,0.9835028],"study_design_scores_gemma":[0.0008964896,0.005083939,0.0015947401,0.012977476,0.0019255148,0.00069185806,0.000541496,0.000003486946,0.000006153117,0.00015892177,0.97572184,0.00039810888],"about_ca_topic_score_codex":0.00059832877,"about_ca_topic_score_gemma":0.00049573963,"teacher_disagreement_score":0.98310465,"about_ca_system_score_codex":0.00054043974,"about_ca_system_score_gemma":0.0012845825,"threshold_uncertainty_score":0.99975955},"labels":[],"label_agreement":null}]}