{"meta":{"query_hash":"d923aa49b106","filters":{"venue":"AIMS Microbiology"},"cohort_total":12,"direct_labels_cover":0,"predictions_cover":12,"exported":12,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/d923aa49b106","api":"https://metacan.xera.ac/api/v1/cohort?venue=AIMS+Microbiology"},"results":[{"id":"W2489687516","doi":"10.3934/microbiol.2016.3.278","title":"Incidence of Top 6 shiga toxigenic &lt;em&gt;Escherichia coli&lt;/em&gt; within two Ontario beef processing facilities: Challenges in screening and confirmation testing","year":2016,"lang":"en","type":"article","venue":"AIMS Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Virulence; Serotype; Escherichia coli; Microbiology; Biology; Shiga toxin; Incubation; Veterinary medicine; Food science; Gene; Genetics; Medicine","score_opus":0.03310791878487017,"score_gpt":0.2673096343667223,"score_spread":0.2342017155818521,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2489687516","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995196,0.000033867313,0.000054311113,0.000019634574,9.166639e-7,0.000010481963,0.000107156404,0.0000030137307,0.00025110884],"genre_scores_gemma":[0.9992355,0.000082503495,0.00017895878,0.000011446793,0.0000020953291,0.000003965829,0.00016504325,0.0000012162878,0.00031922787],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986565,0.00007675489,0.00006211558,0.00017750656,0.0007214283,0.00030560486],"domain_scores_gemma":[0.9986827,0.00013772793,0.00044823156,0.00004726322,0.00041555418,0.00026842247],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000489399,0.00034198113,0.00023274563,0.0007218809,0.0006987413,0.0009472395,0.000495424,0.00040230723,0.00075754017],"category_scores_gemma":[0.0013430434,0.00037406618,0.00019936117,0.000631989,0.00066193397,0.00031786197,0.00062791654,0.00032126193,0.00014395427],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018215235,0.000048958875,0.9762308,0.00005885288,0.000014598024,0.000682146,0.0017303788,0.00013280216,0.016244547,0.000017479797,0.00009047827,0.0045667407],"study_design_scores_gemma":[0.000002091888,0.00022219922,0.9960032,0.0000081281505,0.000009694032,0.00028498418,0.001773414,0.00015217766,0.0013790968,0.0000043499927,0.00015514772,0.0000054795632],"about_ca_topic_score_codex":0.31993732,"about_ca_topic_score_gemma":0.5334351,"teacher_disagreement_score":0.68006265,"about_ca_system_score_codex":0.0024914262,"about_ca_system_score_gemma":0.0022390874,"threshold_uncertainty_score":0.6361501},"labels":[],"label_agreement":null},{"id":"W2511155652","doi":"10.3934/microbiol.2016.3.332","title":"Development of bioleaching: proteomics and genomics approach in metals extraction process","year":2016,"lang":"en","type":"article","venue":"AIMS Microbiology","topic":"Metal Extraction and Bioleaching","field":"Engineering","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Custom Security Industries (Canada); University of Toronto","funders":"","keywords":"Bioleaching; Metaproteomics; Process (computing); Biochemical engineering; Proteomics; Genomics; Biotechnology; Chemistry; Biology; Computer science; Engineering; Biochemistry; Gene","score_opus":0.016997806419915707,"score_gpt":0.2394966748936048,"score_spread":0.22249886847368908,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2511155652","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.15562786,0.33022928,0.48034793,0.007630066,0.0011846253,0.0003984668,0.00094937737,0.0009357057,0.022696683],"genre_scores_gemma":[0.31333673,0.24227993,0.42739674,0.002326332,0.000601069,0.0003833756,0.0012280133,0.0001365084,0.012311314],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995586,0.00008527511,0.00002442099,0.00014610065,0.00014435501,0.000041217987],"domain_scores_gemma":[0.99988294,0.000025160205,0.000018153005,0.000007886836,0.00004833623,0.0000175256],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007594755,0.0006713188,0.0007692427,0.00073668436,0.00033137784,0.0011766073,0.0006441158,0.0008971752,0.00078880956],"category_scores_gemma":[0.00028095464,0.00029694237,0.0004991928,0.0007973676,0.0004188186,0.0014464009,0.0008207592,0.001217292,0.0007750065],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001164181,0.00007634813,0.0011106279,0.0020923626,0.000059544076,0.00025708365,0.00019775341,0.0008540362,0.85417026,0.00793184,0.0011136543,0.13202003],"study_design_scores_gemma":[0.00003321393,0.00064432743,0.0090108365,0.0003574671,0.0001854865,0.0023337642,0.00048576406,0.010069908,0.78038585,0.012021675,0.18435688,0.000114771094],"about_ca_topic_score_codex":0.0004820105,"about_ca_topic_score_gemma":0.0005500684,"teacher_disagreement_score":0.0011766073,"about_ca_system_score_codex":0.00065001624,"about_ca_system_score_gemma":0.0008965378,"threshold_uncertainty_score":0.0047162175},"labels":[],"label_agreement":null},{"id":"W2558577395","doi":"10.3934/microbiol.2016.4.460","title":"Transcriptional activity and role of plasmids of &lt;em&gt;Lactobacillus brevis &lt;/em&gt;BSO 464 and &lt;em&gt;Pediococcus claussenii &lt;/em&gt;ATCC BAA-344T during growth in the presence of hops","year":2016,"lang":"en","type":"article","venue":"AIMS Microbiology","topic":"Fermentation and Sensory Analysis","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal University Hospital; University of Saskatchewan; Contango Strategies (Canada)","funders":"","keywords":"Lactobacillus brevis; Food spoilage; Biology; Bacteria; Plasmid; Lactic acid; Transcriptome; Food science; Lactobacillus; Microbiology; Gene; Biochemistry; Genetics; Gene expression; Lactobacillus plantarum","score_opus":0.011054797313482941,"score_gpt":0.2072480468823815,"score_spread":0.19619324956889855,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2558577395","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99354446,0.00020072536,0.0013149908,0.00012546981,0.000023648308,0.000030949755,0.0037501995,0.00008893961,0.00092058204],"genre_scores_gemma":[0.9766301,0.00027578798,0.0029643415,0.0001474525,0.000014564286,0.00009882533,0.012863091,0.00009934599,0.0069064833],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99959356,0.00006209624,0.00004230099,0.00010697513,0.00008305339,0.000112011614],"domain_scores_gemma":[0.99960667,0.000110549525,0.000096952004,0.000044151984,0.000044174434,0.000097464195],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020388018,0.00038761873,0.00036058194,0.00031858793,0.000147895,0.00040048946,0.00024436254,0.00027789132,0.0014132264],"category_scores_gemma":[0.00037916418,0.00018150806,0.00030503294,0.00050237955,0.00029040215,0.0001861063,0.00046555643,0.0006994495,0.00049724145],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002843616,0.000049780734,0.00043530206,0.00002513042,0.000003966601,0.000022165741,0.00004266174,0.00006610063,0.9981766,0.000039667393,0.000053415384,0.00080081564],"study_design_scores_gemma":[0.000028445878,0.00092981197,0.04076922,0.000016844468,0.000037737787,0.00021839405,0.00039353862,0.0023316548,0.9525312,0.00006660235,0.0026440013,0.000032455617],"about_ca_topic_score_codex":0.0024826557,"about_ca_topic_score_gemma":0.0021567415,"teacher_disagreement_score":0.0024826557,"about_ca_system_score_codex":0.0003376767,"about_ca_system_score_gemma":0.00034452704,"threshold_uncertainty_score":0.004936397},"labels":[],"label_agreement":null},{"id":"W2573348709","doi":"10.3934/microbiol.2017.1.8","title":"Next-generation sequencing approaches for improvement of lactic acid bacteria-fermented plant-based beverages","year":2017,"lang":"en","type":"review","venue":"AIMS Microbiology","topic":"Fermentation and Sensory Analysis","field":"Agricultural and Biological Sciences","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal University Hospital; University of Saskatchewan","funders":"","keywords":"Biotechnology; Fermentation; Food science; Lactic acid; Raw material; Biochemical engineering; Biology; Bacteria; Engineering","score_opus":0.3574088529295906,"score_gpt":0.3145962028364986,"score_spread":0.04281265009309204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2573348709","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0006701327,0.9958845,0.0012941232,0.00022846097,0.00022823601,0.000015282723,0.000066442386,0.000025183692,0.0015875675],"genre_scores_gemma":[0.0021109704,0.99439275,0.0019140184,0.00019644054,0.00009191472,0.000017488612,0.00012389917,0.000007201679,0.0011452142],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99965906,0.000045037836,0.000040146853,0.000064906024,0.00015823485,0.000032562893],"domain_scores_gemma":[0.999655,0.00013120979,0.000058315018,0.000012797814,0.000115648116,0.000027092276],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009011208,0.0012005463,0.0011127165,0.0030696911,0.0002594997,0.00097575015,0.00074211246,0.0011436533,0.0025890393],"category_scores_gemma":[0.0009338765,0.000346405,0.00091598334,0.0027741431,0.00032330854,0.0014894635,0.0007614016,0.0015207111,0.0017506942],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007664099,0.00010278246,0.0003974939,0.02935122,0.00016424966,0.0003046985,0.00013261219,0.00078729016,0.028315539,0.0043016183,0.010804201,0.9252616],"study_design_scores_gemma":[0.00001019605,0.0001323758,0.0014398523,0.0031616725,0.00020293742,0.0007733712,0.00012454663,0.00030906065,0.010308077,0.0020113965,0.9814865,0.000040149953],"about_ca_topic_score_codex":0.0008587955,"about_ca_topic_score_gemma":0.0012919687,"teacher_disagreement_score":0.0030696911,"about_ca_system_score_codex":0.0004663824,"about_ca_system_score_gemma":0.00095621054,"threshold_uncertainty_score":0.008661211},"labels":[],"label_agreement":null},{"id":"W2733725980","doi":"10.3934/microbiol.2017.3.580","title":"The influence of flint stones on a soil microbial community in the northern Negev Desert","year":2017,"lang":"en","type":"article","venue":"AIMS Microbiology","topic":"Soil Carbon and Nitrogen Dynamics","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Biomass (ecology); Organic matter; Soil water; Environmental science; Ecosystem; Microbial population biology; Ecology; Species evenness; Biology; Species diversity","score_opus":0.01883351212207757,"score_gpt":0.23635930733242894,"score_spread":0.21752579521035137,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2733725980","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9998105,0.00006149375,0.000011906939,0.0000022704799,3.351798e-7,8.7240846e-7,0.0000182038,3.5251716e-7,0.000094046365],"genre_scores_gemma":[0.9996519,0.000087336644,0.000081856524,0.0000099107565,0.0000020609207,0.0000029763107,0.00008993833,8.056124e-7,0.000073161755],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99981016,0.0000340102,0.000013511691,0.00006530852,0.000032351036,0.000044722114],"domain_scores_gemma":[0.9998388,0.000024263338,0.00004984086,0.000005640219,0.000026585947,0.0000547881],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021989361,0.00019400513,0.0003508817,0.00046085604,0.00054541125,0.0005267401,0.0002196805,0.00025435566,0.00033803808],"category_scores_gemma":[0.000276932,0.00009996262,0.00013830616,0.0004067307,0.00049216475,0.0002430474,0.00048255804,0.00010834412,0.00006513299],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00074489706,0.000099857345,0.7767672,0.00019148865,0.0001320281,0.0007277165,0.002919408,0.0005006572,0.20292039,0.00008875409,0.000064092,0.014843449],"study_design_scores_gemma":[0.0000025081301,0.000085449006,0.99742484,0.000005503332,0.000011062316,0.00007549469,0.00082976004,0.00017441076,0.0011489186,0.000016383927,0.00022203963,0.0000036398953],"about_ca_topic_score_codex":0.010295373,"about_ca_topic_score_gemma":0.020878801,"teacher_disagreement_score":0.010295373,"about_ca_system_score_codex":0.0004931749,"about_ca_system_score_gemma":0.00028762963,"threshold_uncertainty_score":0.020470858},"labels":[],"label_agreement":null},{"id":"W2793506398","doi":"10.3934/microbiol.2018.1.173","title":"Novel roles for two-component regulatory systems in cytotoxicity and virulence-related &lt;em&gt;properties in Pseudomonas aeruginosa&lt;/em&gt;","year":2018,"lang":"en","type":"article","venue":"AIMS Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Killam Trusts; Cystic Fibrosis Canada","keywords":"Pseudomonas aeruginosa; Virulence; Component (thermodynamics); Microbiology; Cytotoxicity; Biology; Virulence factor; Chemistry; Bacteria; Gene; Genetics; In vitro; Physics","score_opus":0.010569464848606037,"score_gpt":0.2142469860302844,"score_spread":0.20367752118167834,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2793506398","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99418855,0.0010108587,0.003920076,0.00013375128,0.000010110264,0.000023262244,0.00012587197,0.00009006798,0.0004974745],"genre_scores_gemma":[0.9964078,0.0003614284,0.0020972805,0.000059723563,0.000006982062,0.000025935102,0.00026102902,0.000012734717,0.0007671408],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997322,0.000046910685,0.000030429914,0.00005557436,0.00009228092,0.000042650674],"domain_scores_gemma":[0.9997756,0.0000552787,0.0000778504,0.000031368316,0.00003560297,0.000024278977],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029520947,0.000613184,0.00035199136,0.00025418328,0.00012632753,0.00042694,0.00028277424,0.00034805186,0.00092257914],"category_scores_gemma":[0.0002668028,0.00015658351,0.00036151544,0.0001460563,0.00033603868,0.0004313716,0.0003808353,0.00047335002,0.00027556324],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004847744,0.000019013227,0.0003866813,0.000020268235,0.0000019734732,0.000036735946,0.000007583523,0.00005239292,0.9984896,0.000040767824,0.000007742059,0.00088879716],"study_design_scores_gemma":[0.000012514491,0.00039231975,0.018112598,0.0000064684777,0.00003099118,0.0005321053,0.000054714874,0.002082937,0.9778888,0.00015562784,0.00071647036,0.000014522948],"about_ca_topic_score_codex":0.00037839304,"about_ca_topic_score_gemma":0.00048795342,"teacher_disagreement_score":0.00092257914,"about_ca_system_score_codex":0.000250654,"about_ca_system_score_gemma":0.00024623686,"threshold_uncertainty_score":0.003086388},"labels":[],"label_agreement":null},{"id":"W2808120908","doi":"10.3934/microbiol.2018.3.439","title":"Broiler chicken carcasses and their associated abattoirs as a source of enterotoxigenic &lt;em&gt;Clostridium perfringens&lt;/em&gt;: Prevalence and critical steps for contamination","year":2018,"lang":"en","type":"article","venue":"AIMS Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Clostridium perfringens; Broiler; Contamination; Microbiology; Veterinary medicine; Enterotoxigenic Escherichia coli; Food science; Biology; Medicine; Enterotoxin; Bacteria; Escherichia coli; Ecology","score_opus":0.017644950519974265,"score_gpt":0.286891266860993,"score_spread":0.2692463163410187,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2808120908","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99964094,0.00004915444,0.000049346778,0.0000036713245,8.575319e-7,0.0000035747848,0.000063313346,0.0000013406581,0.00018785532],"genre_scores_gemma":[0.9991967,0.000073409894,0.00020138985,0.000010554177,0.0000015161381,0.0000032373594,0.00017198359,0.0000010796587,0.00034004496],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99963236,0.00006403414,0.000035940422,0.000095634954,0.00010037245,0.000071588205],"domain_scores_gemma":[0.99945444,0.00008895393,0.00021085286,0.000015946767,0.000133804,0.00009597991],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003622689,0.00030053584,0.00014663668,0.00072760374,0.0002994313,0.00043204048,0.00017026906,0.00027901534,0.0012256257],"category_scores_gemma":[0.00044127565,0.00022285002,0.00010721637,0.0003146845,0.0002669776,0.00021807462,0.00022546921,0.00017361034,0.00021664814],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027540018,0.00007119217,0.9503012,0.000068047724,0.000026803038,0.00042448807,0.00047087274,0.000057325266,0.045353547,0.000014859495,0.000054772605,0.002881491],"study_design_scores_gemma":[8.929333e-7,0.0001227108,0.99765956,0.000008248858,0.0000087391345,0.0002067995,0.00030947823,0.00004692083,0.0015606034,0.0000018582767,0.00007273447,0.0000014278344],"about_ca_topic_score_codex":0.008358039,"about_ca_topic_score_gemma":0.019930335,"teacher_disagreement_score":0.008358039,"about_ca_system_score_codex":0.00032902218,"about_ca_system_score_gemma":0.00021659858,"threshold_uncertainty_score":0.016618788},"labels":[],"label_agreement":null},{"id":"W3202617560","doi":"10.3934/microbiol.2021022","title":"Lignocelluloytic activities and composition of bacterial community in the camel rumen","year":2021,"lang":"en","type":"article","venue":"AIMS Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Ruminococcus; Rumen; Cellulase; Biology; Bacteroidetes; Xylanase; Fermentation; Firmicutes; Straw; Food science; Bacteria; Microbiology; Cellulose; Agronomy; 16S ribosomal RNA; Biochemistry; Enzyme","score_opus":0.018726784599332906,"score_gpt":0.21525217448147996,"score_spread":0.19652538988214704,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3202617560","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986577,0.00041569857,0.00018413564,0.000019737894,0.000005813937,0.000008767572,0.00047503028,0.0000049272694,0.00022807691],"genre_scores_gemma":[0.9966271,0.00048324827,0.00078706077,0.00010837903,0.000019862442,0.000027166945,0.0011985202,0.0000061124956,0.000742492],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997578,0.00002483856,0.000025517083,0.00009031368,0.000052596875,0.000048976795],"domain_scores_gemma":[0.9998604,0.000012785144,0.00004188687,0.000006899022,0.000038981016,0.000039073027],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027239032,0.0003698217,0.00044926148,0.0011208486,0.0003934698,0.00062366494,0.00015070818,0.00035183734,0.0005382005],"category_scores_gemma":[0.0002746146,0.00021653993,0.000460048,0.000494467,0.00025723418,0.00047276515,0.0003858421,0.00021748096,0.00018588109],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006738492,0.000058104783,0.09073158,0.00011474548,0.000058686404,0.0002656176,0.00063425064,0.000075728654,0.9027968,0.00003546962,0.0000665518,0.0044886903],"study_design_scores_gemma":[0.000013135652,0.0007044247,0.9400741,0.000031513948,0.00010812973,0.00054093235,0.0011685241,0.0005645346,0.055550784,0.000049980972,0.0011652359,0.000028695087],"about_ca_topic_score_codex":0.0023439273,"about_ca_topic_score_gemma":0.0016206654,"teacher_disagreement_score":0.0023439273,"about_ca_system_score_codex":0.00025192165,"about_ca_system_score_gemma":0.00019106858,"threshold_uncertainty_score":0.0046606064},"labels":[],"label_agreement":null},{"id":"W4210665039","doi":"10.3934/microbiol.2022003","title":"Effect of olive and date palm by-products on rumen methanogenic community in Barki sheep","year":2022,"lang":"en","type":"article","venue":"AIMS Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec en Abitibi-Témiscamingue","funders":"","keywords":"Rumen; Fermentation; Biology; Butyric acid; Ruminant; Animal science; Food science; Fatty acid; Forage; Botany; Agronomy; Biochemistry","score_opus":0.011439986118268288,"score_gpt":0.22349915349018482,"score_spread":0.21205916737191652,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210665039","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99981266,0.00009647995,0.000015599893,0.0000039987613,9.183119e-7,0.0000016293208,0.00003332087,5.9224215e-7,0.00003480463],"genre_scores_gemma":[0.999116,0.00017396612,0.00018417994,0.00002197183,0.0000037137622,0.000009885985,0.00012139003,0.000001864091,0.00036694494],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99985886,0.00002807784,0.000014187802,0.000048727823,0.000022578139,0.000027594466],"domain_scores_gemma":[0.999731,0.00004092921,0.00006969455,0.000012907475,0.00002985671,0.00011548045],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020504677,0.00027404283,0.00036044483,0.00036315844,0.00024635426,0.0003885855,0.00015105735,0.00027722312,0.0004779192],"category_scores_gemma":[0.00025627678,0.00019476058,0.0002697681,0.00018936032,0.00027040206,0.00024116175,0.00024526726,0.00032604884,0.00014275804],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.017464552,0.0009794576,0.13071711,0.00024324203,0.00014678825,0.00036835106,0.000763005,0.00012493366,0.8396639,0.00003762575,0.0000585161,0.009432619],"study_design_scores_gemma":[0.00006209185,0.010240296,0.9236594,0.000033829496,0.00015768218,0.00024677158,0.0013692443,0.00049907935,0.063045554,0.000052821644,0.00061121536,0.000022072301],"about_ca_topic_score_codex":0.0014511592,"about_ca_topic_score_gemma":0.0031546631,"teacher_disagreement_score":0.0014511592,"about_ca_system_score_codex":0.0001890794,"about_ca_system_score_gemma":0.00015777048,"threshold_uncertainty_score":0.0028854012},"labels":[],"label_agreement":null},{"id":"W4285613396","doi":"10.3934/microbiol.2022022","title":"Evaluation of the use of CRISPR loci for discrimination of &lt;i&gt;Salmonella enterica&lt;/i&gt; subsp. &lt;i&gt;enterica&lt;/i&gt; serovar Enteritidis strains recovered in Canada and comparison with other subtyping methods","year":2022,"lang":"en","type":"article","venue":"AIMS Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"","keywords":"Subtyping; Biology; Salmonella enterica; CRISPR; Typing; Pulsed-field gel electrophoresis; Genetics; Virulence; Salmonella enteritidis; Serotype; Computational biology; Outbreak; Genome; Salmonella; Microbiology; Gene; Virology; Genotype; Bacteria","score_opus":0.07091557329923608,"score_gpt":0.28931687483566515,"score_spread":0.21840130153642906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4285613396","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957683,0.00025725627,0.0019433905,0.000056580026,0.000015013676,0.00009778072,0.0008046292,0.000033771623,0.0010233934],"genre_scores_gemma":[0.98522276,0.00051245163,0.009989116,0.000086832304,0.000007753995,0.000082207654,0.0017049748,0.000023532499,0.002370419],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9982717,0.00024963202,0.0001266835,0.00045358023,0.0006906089,0.00020778738],"domain_scores_gemma":[0.9982514,0.00053840084,0.00027994803,0.0001242775,0.0006282849,0.00017769737],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011398022,0.0005366177,0.00048010843,0.0010621212,0.0004029413,0.00087367196,0.0005536529,0.0005889115,0.0007763625],"category_scores_gemma":[0.001840214,0.00026748204,0.0005326315,0.0008667627,0.0006014142,0.0002414392,0.00051944173,0.0003863633,0.00037431502],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009826713,0.0005535719,0.08695964,0.00020956267,0.000114362134,0.00019693462,0.00055319536,0.00057350093,0.88669807,0.000059902755,0.00015174598,0.02294681],"study_design_scores_gemma":[0.000059940754,0.008612692,0.4683329,0.000047791258,0.00035845122,0.0011254621,0.0015223415,0.0033138676,0.51338553,0.00005171061,0.0030889127,0.00010039748],"about_ca_topic_score_codex":0.027988523,"about_ca_topic_score_gemma":0.07461724,"teacher_disagreement_score":0.97201145,"about_ca_system_score_codex":0.0006508891,"about_ca_system_score_gemma":0.0008282057,"threshold_uncertainty_score":0.055651248},"labels":[],"label_agreement":null},{"id":"W4399683047","doi":"10.3934/microbiol.2024021","title":"Use of plant growth-promoting bacteria to facilitate phytoremediation","year":2024,"lang":"en","type":"review","venue":"AIMS Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"","keywords":"Phytoremediation; Plant growth; Bacteria; Environmental science; Biotechnology; Biology; Agronomy; Ecology; Contamination","score_opus":0.0871492043569989,"score_gpt":0.2556092783022461,"score_spread":0.1684600739452472,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399683047","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0006131635,0.99796873,0.0002726498,0.0000864888,0.000112388385,0.00000757828,0.000026132464,0.000009666468,0.00090311473],"genre_scores_gemma":[0.0032587263,0.99537,0.0005470875,0.0000952974,0.00006364597,0.000008777329,0.000061926636,0.0000025378852,0.0005919964],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99982893,0.000024727538,0.000023404553,0.00003892804,0.00006398781,0.000020013173],"domain_scores_gemma":[0.999806,0.00007375734,0.00004217301,0.0000074167965,0.00005458187,0.00001610722],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031842032,0.0009889572,0.001156311,0.0040295715,0.00025017076,0.0009497078,0.0004774184,0.0007410365,0.0018740348],"category_scores_gemma":[0.0004553235,0.00028131274,0.00055492326,0.0025115998,0.00023868434,0.0009320653,0.0004984639,0.0007959745,0.0010571731],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000094859366,0.00014021713,0.0004740201,0.06246926,0.00023647214,0.00042931736,0.00015328584,0.0007482388,0.02435375,0.0024988018,0.007948771,0.90045285],"study_design_scores_gemma":[0.000019280662,0.00028838764,0.002502074,0.00735032,0.0005196332,0.0024260369,0.00017365857,0.00020915881,0.011200249,0.0010901176,0.9741736,0.000047567966],"about_ca_topic_score_codex":0.00083694886,"about_ca_topic_score_gemma":0.0017137333,"teacher_disagreement_score":0.0040295715,"about_ca_system_score_codex":0.00033699392,"about_ca_system_score_gemma":0.00093137013,"threshold_uncertainty_score":0.006269276},"labels":[],"label_agreement":null},{"id":"W4404708809","doi":"10.3934/microbiol.2024046","title":"Biodecomposition with &lt;i&gt;Phanerochaete chrysosporium&lt;/i&gt;: A review","year":2024,"lang":"en","type":"review","venue":"AIMS Microbiology","topic":"Enzyme-mediated dye degradation","field":"Agricultural and Biological Sciences","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Université de Sherbrooke; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Institut national de la recherche scientifique","keywords":"Phanerochaete; Chrysosporium; Biodegradation; Chemistry; Lignin; Organic chemistry","score_opus":0.020029262943802514,"score_gpt":0.2549632971660218,"score_spread":0.23493403422221926,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404708809","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00043038893,0.9974197,0.0002756665,0.00018755718,0.0001972487,0.000010020755,0.000063581065,0.0000117522095,0.0014041793],"genre_scores_gemma":[0.0015534292,0.9970927,0.00030649087,0.00014010126,0.00009863025,0.000010734772,0.000089082314,0.0000026423434,0.00070623273],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99972814,0.000030614745,0.000058340866,0.00006493793,0.000087653716,0.000030310171],"domain_scores_gemma":[0.9995034,0.00020889864,0.00010335938,0.000014233624,0.00013926497,0.000030928753],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00054593943,0.0009601755,0.0010365902,0.0029849696,0.0003564342,0.0014394651,0.0007311535,0.0010074462,0.004294467],"category_scores_gemma":[0.00083501555,0.00039827838,0.000906726,0.0030702236,0.0003021922,0.0017409364,0.0006126892,0.00083348085,0.0016642173],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011454962,0.00014667379,0.0005113868,0.085619085,0.00023735824,0.0004434021,0.00016266832,0.0008213386,0.006432553,0.004277216,0.02905423,0.87217945],"study_design_scores_gemma":[0.000008668728,0.0001823887,0.0011170862,0.006327294,0.0004142929,0.0010042923,0.00012066279,0.00019110818,0.002987138,0.0010048182,0.98660547,0.000036773763],"about_ca_topic_score_codex":0.001745207,"about_ca_topic_score_gemma":0.001959383,"teacher_disagreement_score":0.004294467,"about_ca_system_score_codex":0.00061486824,"about_ca_system_score_gemma":0.001828936,"threshold_uncertainty_score":0.014366388},"labels":[],"label_agreement":null}]}