{"meta":{"query_hash":"0eeb850af1f5","filters":{"venue":"Applied and Environmental Microbiology"},"cohort_total":1368,"direct_labels_cover":1,"predictions_cover":1368,"exported":1368,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/0eeb850af1f5","api":"https://metacan.xera.ac/api/v1/cohort?venue=Applied+and+Environmental+Microbiology"},"results":[{"id":"W1531822746","doi":"10.1128/aem.04258-14","title":"Next-Generation Pyrosequencing Analysis of Microbial Biofilm Communities on Granular Activated Carbon in Treatment of Oil Sands Process-Affected Water","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Hydrocarbon exploration and reservoir analysis","field":"Engineering","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Biofilm; Microbial population biology; Biodegradation; Microbiology; Chemistry; Bioreactor; Environmental chemistry; Bacteria; Food science; Biology; Organic chemistry","score_opus":0.022324855956276292,"score_gpt":0.2037046328849816,"score_spread":0.18137977692870533,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1531822746","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995102,0.00014303498,0.000010763976,0.000009718983,0.000023917515,0.00006789596,0.00003970669,0.00001813098,0.00017658142],"genre_scores_gemma":[0.9979195,0.0003377381,0.000020321697,0.0000117422205,0.000011088222,0.000019679257,0.0016588274,0.000012563579,0.000008520099],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99937844,0.000049381262,0.000259875,0.000127582,0.000037036276,0.00014768165],"domain_scores_gemma":[0.9997699,0.0000115849,0.000040824278,0.00013736633,0.000003953756,0.000036331036],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006442393,0.00015578934,0.00039002253,0.000323137,0.000022091517,0.000005365859,0.000053545795,0.00011669747,0.000020021676],"category_scores_gemma":[5.517854e-7,0.00011738674,0.000056055105,0.000142824,0.00011757556,0.000029552813,0.000014742683,0.00005770385,0.000001632799],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030680523,0.000109641805,0.0014778717,0.000013554642,0.00028594123,7.58835e-7,0.003262513,0.077197164,0.9173037,0.0000020261111,0.0000016882956,0.00031450565],"study_design_scores_gemma":[0.00085368415,0.00013165674,0.00032833204,0.0000050153158,0.00019833916,0.0000012909422,0.0015083472,0.019756088,0.97705203,0.000003954597,0.00003406997,0.00012718521],"about_ca_topic_score_codex":0.00025117386,"about_ca_topic_score_gemma":0.00028756078,"teacher_disagreement_score":0.05974838,"about_ca_system_score_codex":0.00010832441,"about_ca_system_score_gemma":0.0000049442538,"threshold_uncertainty_score":0.47868925},"labels":[],"label_agreement":null},{"id":"W1565486418","doi":"10.1128/aem.01238-15","title":"Microbial Diversity in Engineered Haloalkaline Environments Shaped by Shared Geochemical Drivers Observed in Natural Analogues","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Bauxite; Firmicutes; Microbial population biology; Proteobacteria; Ecology; Biology; Ascomycota; Community structure; Extreme environment; Phylum; Microbial ecology; Bacteria; Chemistry; Paleontology","score_opus":0.014283772974359545,"score_gpt":0.18158104642133358,"score_spread":0.16729727344697404,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1565486418","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99884146,0.00016655163,0.000011262113,0.00012434857,0.00010136968,0.0003258056,0.00019259863,0.000017821743,0.00021877716],"genre_scores_gemma":[0.9958418,0.00010307206,0.00024235444,0.00067671336,0.000015771171,0.00001642312,0.0029620577,0.000016426546,0.0001253619],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99825937,0.00017551424,0.00033289523,0.00059565133,0.00005977707,0.00057681464],"domain_scores_gemma":[0.99945515,0.000066707944,0.00008503157,0.0002435682,6.415741e-7,0.0001488887],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00025182017,0.00032326445,0.0004343663,0.00007071043,0.00013506204,0.000008212258,0.0004246847,0.0003604139,0.0009118563],"category_scores_gemma":[0.0000079366255,0.0003441482,0.00004987844,0.00011691614,0.00077369454,0.00011893572,0.0016949968,0.0005363833,0.00023893465],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019528356,0.0002888313,0.08977182,0.0000030627805,0.000016749489,0.000012174713,0.0007463984,0.00011686864,0.9062988,0.000008138181,0.0023534782,0.00018839583],"study_design_scores_gemma":[0.022788415,0.0006735912,0.8346696,0.00003199721,0.000095130425,0.00018998852,0.00266953,0.0009432313,0.08450653,0.0016135384,0.04897769,0.0028407515],"about_ca_topic_score_codex":0.0006319336,"about_ca_topic_score_gemma":0.00094826403,"teacher_disagreement_score":0.82179224,"about_ca_system_score_codex":0.0004263453,"about_ca_system_score_gemma":0.0000060118823,"threshold_uncertainty_score":0.99990106},"labels":[],"label_agreement":null},{"id":"W1568068024","doi":"10.1128/aem.00315-15","title":"Eight Novel Capsular Polysaccharide Synthesis Gene Loci Identified in Nontypeable Streptococcus suis Isolates","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"National Natural Science Foundation of China","keywords":"Streptococcus suis; Biology; Gene; Microbiology; Serotype; Pathogen; Homology (biology); Gene cluster; Genetics; Virulence","score_opus":0.016093398057930218,"score_gpt":0.21850846470299803,"score_spread":0.2024150666450678,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1568068024","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99812794,0.0005067121,0.00006622098,0.000063743384,0.000069792135,0.00051087805,0.000110535504,0.000023367676,0.0005208324],"genre_scores_gemma":[0.9985969,0.00013152187,0.000364997,0.0001379116,0.000042924257,0.00015069284,0.00023454112,0.000021686084,0.0003188447],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99900264,0.000014845338,0.00024185255,0.00039840542,0.000034786466,0.00030747792],"domain_scores_gemma":[0.9995443,0.000035992874,0.000057059508,0.00021002913,0.000003411148,0.00014915538],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008078055,0.0002061854,0.0003310001,0.00010091472,0.00005962255,0.000011894682,0.00005078767,0.00016828201,0.0002909238],"category_scores_gemma":[0.000006758403,0.00017567522,0.00005142162,0.00006458623,0.00016068255,0.00003776492,0.000085871914,0.0001265549,0.00021818276],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006483075,0.0003937025,0.19586216,0.0000080294685,0.000095128045,0.000017186461,0.00008474763,0.000007688283,0.8024919,0.000033070377,0.0001292281,0.0008123047],"study_design_scores_gemma":[0.0063891876,0.0003435519,0.20578887,0.00003266459,0.0002681479,0.00042373678,0.0006306593,0.00006961668,0.780635,0.00015635008,0.0047862995,0.000475932],"about_ca_topic_score_codex":0.0003133172,"about_ca_topic_score_gemma":0.0000365295,"teacher_disagreement_score":0.021856928,"about_ca_system_score_codex":0.00016302826,"about_ca_system_score_gemma":0.000017341756,"threshold_uncertainty_score":0.71638274},"labels":[],"label_agreement":null},{"id":"W1677337874","doi":"10.1128/aem.69.7.4049-4056.2003","title":"Characterization of Genes Involved in the Metabolism of α-Galactosides by <i>Lactococcus raffinolactis</i>","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Dairy Farmers of Canada","keywords":"Galactosides; Operon; Melibiose; Lac repressor; Raffinose; Galactokinase; Biochemistry; Galactose; Biology; gal operon; Lactococcus lactis; lac operon; Lactose; Molecular biology; Gene; Gene expression; Genetics; Mutant; Bacteria; Escherichia coli","score_opus":0.0055724330346727195,"score_gpt":0.1544709304055729,"score_spread":0.14889849737090016,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1677337874","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99900967,0.00035055706,0.000002887183,0.000053637912,0.00002122861,0.0002131607,0.00015989096,0.0000028855363,0.0001860727],"genre_scores_gemma":[0.9990545,0.0003992042,0.000016901564,0.00016563296,0.000008137484,0.00001159291,0.00033545517,7.736779e-7,0.000007804547],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994543,0.000057488684,0.00018810964,0.00014573413,0.000025888457,0.0001284819],"domain_scores_gemma":[0.9997989,0.00004286678,0.00010118852,0.000039519906,0.0000015398363,0.000015999301],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011254055,0.000092798095,0.00016249767,0.0000082607285,0.000034793153,0.000004563505,0.00009739191,0.00008707795,0.000044481334],"category_scores_gemma":[0.0000015172337,0.000035687288,0.000026862237,0.00006328657,0.00014035893,0.000023331704,0.000027954962,0.00005959058,0.0000013822317],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014289254,0.00012075195,0.006003889,0.0000031365657,0.000007772661,1.07860046e-7,0.000072263654,2.1044355e-7,0.9906612,0.00038466926,0.000011884737,0.0027198398],"study_design_scores_gemma":[0.00023543216,0.00007216735,0.075758286,0.0000027033552,0.000010230732,0.0000037595435,0.00035173548,7.575708e-7,0.9116491,0.00008845605,0.011744457,0.00008292216],"about_ca_topic_score_codex":0.000017255708,"about_ca_topic_score_gemma":0.000010642617,"teacher_disagreement_score":0.079012096,"about_ca_system_score_codex":0.0000050759086,"about_ca_system_score_gemma":0.000001374469,"threshold_uncertainty_score":0.14552854},"labels":[],"label_agreement":null},{"id":"W1767958103","doi":"10.1128/aem.00786-15","title":"Metabolism of Doubly <i>para</i> -Substituted Hydroxychlorobiphenyls by Bacterial Biphenyl Dioxygenases","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"","keywords":"Biphenyl; Hydroxylation; Dioxygenase; Chemistry; Metabolite; Stereochemistry; Metabolism; Ring (chemistry); Burkholderia; Bacteria; Biochemistry; Enzyme; Organic chemistry; Biology","score_opus":0.009151299514097625,"score_gpt":0.1819999500841767,"score_spread":0.17284865057007906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1767958103","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972122,0.00021604783,0.00004023662,0.00006491835,0.0002286946,0.00027307397,0.0005411231,0.000028747965,0.0013950057],"genre_scores_gemma":[0.9979403,0.0001690241,0.00051524985,0.0003757165,0.000050944916,0.00000888143,0.0007680221,0.000018133205,0.00015371056],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986843,0.000045742447,0.00036951387,0.0004564443,0.000096564734,0.0003474661],"domain_scores_gemma":[0.9993803,0.000022927818,0.00016906731,0.00021793004,0.0000018375935,0.00020792807],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00016049779,0.00026318256,0.00034524343,0.000028588174,0.00006291345,0.000012941731,0.00021296856,0.0001864801,0.001495101],"category_scores_gemma":[0.0000054223374,0.0002252091,0.00005236089,0.00009191509,0.0007623709,0.00009563713,0.0002695884,0.00010059712,0.00044492813],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010701927,0.00014568407,0.0023389754,0.0000030834583,0.000022795735,0.0000010970278,0.00017030658,0.000011559133,0.9895019,0.000025319794,0.0068096416,0.0008625959],"study_design_scores_gemma":[0.0020436528,0.00007147885,0.004936981,0.0000029123712,0.000036874964,0.000032058764,0.00011387744,0.000005128755,0.83767426,0.00007518033,0.15463722,0.00037040707],"about_ca_topic_score_codex":0.00018970281,"about_ca_topic_score_gemma":0.000034422024,"teacher_disagreement_score":0.1518277,"about_ca_system_score_codex":0.00007138828,"about_ca_system_score_gemma":0.0000090755,"threshold_uncertainty_score":0.99941766},"labels":[],"label_agreement":null},{"id":"W1787120031","doi":"10.1128/aem.00848-15","title":"Comparative Analysis of Denitrifying Activities of Hyphomicrobium nitrativorans, Hyphomicrobium denitrificans, and Hyphomicrobium zavarzinii","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":208,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"","keywords":"Denitrifying bacteria; Denitrification; Nitrite reductase; Paracoccus denitrificans; Nitrate reductase; Biology; Nitrate; Biochemistry; Microbiology; Chemistry; Enzyme; Ecology","score_opus":0.014877377704518574,"score_gpt":0.20658868524677962,"score_spread":0.19171130754226104,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1787120031","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975009,0.00068368233,0.00005252849,0.000027645186,0.00005992113,0.00039337412,0.00048868946,0.000020365773,0.0007728941],"genre_scores_gemma":[0.9957468,0.00014739815,0.00338739,0.000063244246,0.000015206118,0.000018221153,0.000402879,0.00002226667,0.00019657398],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980946,0.00012337412,0.00058532733,0.0006489765,0.000100222365,0.0004474981],"domain_scores_gemma":[0.99905413,0.00011697306,0.0003386217,0.00030304035,0.0000047191434,0.00018248773],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00022828048,0.0004352172,0.0010542151,0.00023758612,0.00012115544,0.000019593872,0.00022749412,0.00021911693,0.0002287628],"category_scores_gemma":[0.000002441293,0.00039185208,0.00015432862,0.00032342903,0.0016813023,0.00013746253,0.00035057822,0.0001825932,0.00003036185],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028037227,0.00025555858,0.03836932,0.000015672184,0.0008919195,0.0000041399935,0.0022551871,0.00009384013,0.95729804,0.00003003836,0.0002626131,0.0002432973],"study_design_scores_gemma":[0.00211582,0.00022140652,0.014783743,0.000008448143,0.0012172695,0.00009057845,0.004289985,0.00004756469,0.97560203,0.000060236784,0.0011212694,0.00044163485],"about_ca_topic_score_codex":0.00034235106,"about_ca_topic_score_gemma":0.00012499615,"teacher_disagreement_score":0.023585578,"about_ca_system_score_codex":0.00013843682,"about_ca_system_score_gemma":0.000019398452,"threshold_uncertainty_score":0.9998533},"labels":[],"label_agreement":null},{"id":"W1870558638","doi":"10.1128/aem.01248-15","title":"Coupling the CRISPR/Cas9 System with Lambda Red Recombineering Enables Simplified Chromosomal Gene Replacement in Escherichia coli","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":282,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University of Waterloo","funders":"","keywords":"Recombineering; CRISPR; Cas9; Biology; Genome editing; Genetics; Plasmid; Homologous recombination; Escherichia coli; Gene; DNA","score_opus":0.005467233457581778,"score_gpt":0.19925630402220776,"score_spread":0.193789070564626,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1870558638","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964573,0.0008194937,0.00201969,0.000050490526,0.00008721039,0.00031180514,0.000017438395,0.00001533674,0.00022124761],"genre_scores_gemma":[0.9987763,0.00012475182,0.00058148656,0.000078048855,0.00007575607,0.00006974871,0.00020759605,0.000027362928,0.000058941183],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990861,0.000016552722,0.00019902819,0.00036810897,0.000039171166,0.0002910576],"domain_scores_gemma":[0.99961555,0.000010413542,0.000049819075,0.0002474405,0.0000034571426,0.00007330839],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016771976,0.00019627999,0.00018203336,0.000023360903,0.00006419155,0.00001412415,0.00011465072,0.00012803549,0.000004606444],"category_scores_gemma":[0.00000289455,0.0001502388,0.000021806643,0.00004156464,0.00010053944,0.000002220613,0.00015028127,0.00010658323,0.000004402086],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001567226,0.000029528976,0.0016732122,0.00001831086,0.00003798195,0.0000044519074,0.00008975189,0.00836379,0.98938745,0.000030289288,0.0001298053,0.00007872443],"study_design_scores_gemma":[0.0028843405,0.00056934747,0.0034345658,0.000025716206,0.00003521354,0.0002216019,0.0030015737,0.0015125116,0.9751611,0.000005701394,0.012672969,0.00047539774],"about_ca_topic_score_codex":0.000024821304,"about_ca_topic_score_gemma":0.00002312907,"teacher_disagreement_score":0.0142263705,"about_ca_system_score_codex":0.000054653934,"about_ca_system_score_gemma":0.000015867996,"threshold_uncertainty_score":0.6126561},"labels":[],"label_agreement":null},{"id":"W1874616036","doi":"10.1128/aem.00780-15","title":"Microbiota at Multiple Body Sites during Pregnancy in a Rural Tanzanian Population and Effects of Moringa-Supplemented Probiotic Yogurt","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":115,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Lawson Health Research Institute; Western University","funders":"","keywords":"Probiotic; Micronutrient; Lactobacillus; Pregnancy; Population; Bifidobacterium; Malnutrition; Biology; Tanzania; Feces; Gut flora; Medicine; Moringa; Physiology; Environmental health; Food science; Microbiology; Immunology; Internal medicine; Bacteria","score_opus":0.0039938635699412394,"score_gpt":0.18915119318438292,"score_spread":0.18515732961444167,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1874616036","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974111,0.0017918127,0.000004790286,0.000026813523,0.00004768944,0.00060056173,0.00008947903,0.000006933305,0.00002081805],"genre_scores_gemma":[0.9977686,0.0003829975,0.00027865884,0.000051650703,0.000024718838,0.000026423757,0.0013488724,0.00002190279,0.00009617566],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99895793,0.000044283606,0.00027321905,0.00037901333,0.000024886,0.00032065893],"domain_scores_gemma":[0.99961805,0.000011824609,0.00010785665,0.00016734163,0.0000033945814,0.00009155615],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005371636,0.00021000633,0.0002512157,0.00006156831,0.000072691335,0.0000059880836,0.00007427795,0.00018796956,0.0000074723907],"category_scores_gemma":[0.0000065451786,0.00020644897,0.000028900677,0.000037928326,0.00015359499,0.0000050736735,0.00028254534,0.00008345341,0.0000042366937],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000104898456,0.000094151204,0.19203225,0.0001362484,0.000021298125,0.0000025338063,0.00017729882,0.0000025963623,0.8072649,0.0000071764107,0.000032297874,0.00012435077],"study_design_scores_gemma":[0.0034764137,0.00030303866,0.34836456,0.00007798427,0.000021117707,0.00012875615,0.0002485862,0.0000067422375,0.64674443,0.000010554951,0.00036957875,0.00024823425],"about_ca_topic_score_codex":0.00008929759,"about_ca_topic_score_gemma":0.00016208684,"teacher_disagreement_score":0.16052048,"about_ca_system_score_codex":0.000066996385,"about_ca_system_score_gemma":0.000009670732,"threshold_uncertainty_score":0.8418745},"labels":[],"label_agreement":null},{"id":"W1879125217","doi":"10.1128/aem.00735-15","title":"Facultative Anaerobe Caldibacillus debilis GB1: Characterization and Use in a Designed Aerotolerant, Cellulose-Degrading Coculture with Clostridium thermocellum","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Clostridium thermocellum; Cellulose; Strain (injury); Food science; Clostridium; Facultative; Biology; Microbiology; Biochemistry; Chemistry; Bacteria; Botany; Cellulase","score_opus":0.010076869425157245,"score_gpt":0.16988852302418214,"score_spread":0.15981165359902488,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1879125217","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99864924,0.00005479347,0.00036864256,0.0000612066,0.00003021646,0.00057665183,0.000085152176,0.000017221768,0.00015687919],"genre_scores_gemma":[0.99796945,0.00014939033,0.00072728505,0.00025205594,0.000019307701,0.00002956482,0.00062844023,0.00001861325,0.00020587114],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99888426,0.00006549286,0.00020721275,0.00048524907,0.00006394046,0.00029386603],"domain_scores_gemma":[0.99964476,0.00002801811,0.00010204922,0.00009670021,0.0000020330478,0.00012642461],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012684031,0.00024373384,0.00022719365,0.00003295758,0.00007817319,0.000034372777,0.00007700814,0.00016720202,0.00014248119],"category_scores_gemma":[0.0000035839562,0.00018326903,0.000016396663,0.00010111494,0.0004179171,0.00015616903,0.00011447397,0.00013629587,0.000040721],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012275873,0.00006906896,0.031894937,0.000006172796,0.000008754746,0.000007306997,0.0015692275,0.000022743694,0.96467566,0.0000099611625,0.00007618369,0.0015372278],"study_design_scores_gemma":[0.0060412,0.00082417665,0.1491236,0.000039341663,0.0000765927,0.0001826798,0.0026746592,0.00034957647,0.8228499,0.000048261158,0.016508814,0.0012811542],"about_ca_topic_score_codex":0.00022482185,"about_ca_topic_score_gemma":0.00018738951,"teacher_disagreement_score":0.1418257,"about_ca_system_score_codex":0.00014688887,"about_ca_system_score_gemma":0.0000059774284,"threshold_uncertainty_score":0.74734944},"labels":[],"label_agreement":null},{"id":"W1914653381","doi":"10.1128/aem.02484-15","title":"Resistance of Aerosolized Bacterial Viruses to Relative Humidity and Temperature","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec","funders":"","keywords":"Aerosolization; Infectivity; Bioaerosol; Lytic cycle; Bacterial virus; Microbiology; Bacteriophage; Relative humidity; DNA; Biology; Chemistry; Virology; Virus; Aerosol; Escherichia coli; Genetics","score_opus":0.010442726667133894,"score_gpt":0.21040544708975187,"score_spread":0.19996272042261798,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1914653381","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977241,0.000059904964,0.000009471629,0.00010381335,0.00010706892,0.00020293238,0.00017148288,0.000009899127,0.0016113034],"genre_scores_gemma":[0.99793804,0.000037675716,0.0010864371,0.00031274726,0.00002820611,0.000013126708,0.00005237002,0.000010739616,0.00052063714],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992838,0.00003204165,0.00017365866,0.00030834638,0.000028332224,0.0001738134],"domain_scores_gemma":[0.99966365,0.0000244509,0.000064629494,0.00012499977,0.0000012402317,0.00012101692],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000728716,0.00014296656,0.0001981056,0.000017526641,0.000076246106,0.000011791031,0.00007492263,0.00010828419,0.0005862987],"category_scores_gemma":[0.000005662237,0.0001266025,0.00002119514,0.000041972897,0.00039521727,0.000087757726,0.0002682938,0.00010026949,0.00009627434],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015117302,0.000043171705,0.00083620445,0.000003004054,0.0000116585725,0.0000012207154,0.0005049426,0.0000024872975,0.9968662,0.00004563946,0.0013876328,0.0001466229],"study_design_scores_gemma":[0.0015636896,0.00023131455,0.061805896,0.000016981388,0.000039489965,0.000095836156,0.00065194076,5.118055e-7,0.7983533,0.0002842289,0.13653758,0.00041922435],"about_ca_topic_score_codex":0.000063661246,"about_ca_topic_score_gemma":0.00006854006,"teacher_disagreement_score":0.19851294,"about_ca_system_score_codex":0.000062789404,"about_ca_system_score_gemma":0.0000034331797,"threshold_uncertainty_score":0.641956},"labels":[],"label_agreement":null},{"id":"W19270123","doi":"10.1128/aem.02147-08","title":"KAJIAN EMPIRIS ATAS PERILAKU BELAJAR, EFIKASI DIRI, KECERDASAN EMOSIONAL DAN KECERDASAN SPIRITUAL DALAM MEMPENGARUHI STRES KULIAH MAHASISWA AKUNTANSI DI UNIVERSITAS MURIA KUDUS","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Student Stress and Coping","field":"Psychology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Psychology","score_opus":0.0073159909836660415,"score_gpt":0.21629812266191176,"score_spread":0.20898213167824573,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W19270123","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9847384,0.0010653213,0.000021106605,0.00041106922,0.000524927,0.00067662547,0.0003755949,0.000089837275,0.012097094],"genre_scores_gemma":[0.99614125,0.00020997619,0.00019406315,0.0008380519,0.00023681384,0.000108308486,0.0013048339,0.00006701208,0.000899656],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9972465,0.00012571951,0.0004848203,0.0011072316,0.00013632966,0.00089940894],"domain_scores_gemma":[0.998887,0.00009797681,0.00019272206,0.00054128485,0.0000072308217,0.0002738105],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000093702474,0.0005879124,0.0005786506,0.00012863406,0.0005694273,0.00007081015,0.00048044417,0.0004381215,0.010352017],"category_scores_gemma":[0.0000028261436,0.00056187686,0.00015046807,0.0000960182,0.00081828237,0.00012941244,0.0006293036,0.00044951544,0.0008935079],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035638412,0.0012561879,0.34385577,0.00004999705,0.00083980226,0.00013144224,0.0052352897,0.000016978318,0.5899606,0.007983939,0.029208167,0.021105483],"study_design_scores_gemma":[0.005284702,0.00062194077,0.8337466,0.000056034667,0.00023021777,0.0003403243,0.03302093,0.000008189044,0.0060537383,0.0002746485,0.11884505,0.0015176092],"about_ca_topic_score_codex":0.00030813512,"about_ca_topic_score_gemma":0.000051417435,"teacher_disagreement_score":0.5839068,"about_ca_system_score_codex":0.00013429024,"about_ca_system_score_gemma":0.00001703181,"threshold_uncertainty_score":0.9998844},"labels":[],"label_agreement":null},{"id":"W1931789414","doi":"10.1128/aem.02089-15","title":"Mutual Cross-Feeding Interactions between Bifidobacterium longum subsp. longum NCC2705 and Eubacterium rectale ATCC 33656 Explain the Bifidogenic and Butyrogenic Effects of Arabinoxylan Oligosaccharides","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolites in Food Biotechnology","field":"Nursing","cited_by":222,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Bifidobacterium longum; Butyrate; Eubacterium; Arabinoxylan; Biochemistry; Arabinose; Fermentation; Biology; Bifidobacterium; Metabolite; Bifidobacterium breve; Xylose; Microbiology; Chemistry; Bacteria; Enzyme; Lactobacillus; Genetics","score_opus":0.010354704489634898,"score_gpt":0.22245605351688352,"score_spread":0.21210134902724861,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1931789414","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951391,0.002680702,0.000025049721,0.00034795166,0.0008216683,0.0006126023,0.0002644986,0.00006491045,0.000043483407],"genre_scores_gemma":[0.9987013,0.00027966304,0.00028246338,0.00019698702,0.00022272619,0.000039630388,0.00018474217,0.000050723735,0.000041794112],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997951,0.00014493083,0.0005290704,0.0007201435,0.00006649523,0.00058839226],"domain_scores_gemma":[0.9988669,0.0002719645,0.00028024838,0.000404123,0.000010997565,0.00016577695],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00031999036,0.00042769013,0.0006055395,0.00017384313,0.0002467463,0.000061170715,0.0002781209,0.00041477822,0.00002602574],"category_scores_gemma":[0.000050393188,0.00035288848,0.00007457714,0.00013251769,0.0018853103,0.00012948466,0.0006086158,0.00047693538,0.000028058314],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021133912,0.000062499974,0.03304117,0.000071270835,0.00009891346,0.0000033421104,0.0011357204,5.5051146e-7,0.96128976,0.00005144167,0.000101909056,0.003932053],"study_design_scores_gemma":[0.0015948407,0.00047593188,0.04341948,0.000036378166,0.00020229505,0.0006082145,0.00083498476,0.0000052887362,0.9474078,0.00024012021,0.004739549,0.00043514094],"about_ca_topic_score_codex":0.000058674188,"about_ca_topic_score_gemma":0.000026455516,"teacher_disagreement_score":0.013882012,"about_ca_system_score_codex":0.00009526671,"about_ca_system_score_gemma":0.000010229037,"threshold_uncertainty_score":0.9998923},"labels":[],"label_agreement":null},{"id":"W19395559","doi":"10.1128/aem.01761-08","title":"New Governance in the Teeth of Human Frailty: Lessons from Financial Regulation","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Global Financial Regulation and Crises","field":"Economics, Econometrics and Finance","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Corporate governance; Scholarship; Narrative; Law and economics; Political science; Securitization; Business; Economics; Accounting; Finance; Law","score_opus":0.01639635893648741,"score_gpt":0.20725312675438987,"score_spread":0.19085676781790245,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W19395559","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99156046,0.0010123571,0.00024488822,0.0008294329,0.00004394524,0.00012331006,0.00021133036,0.000004837944,0.005969427],"genre_scores_gemma":[0.9987718,0.00014464116,0.00020793451,0.0005882105,0.000046196237,0.0000027565081,0.000116423624,0.0000035734465,0.0001184656],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"observational","domain_scores_codex":[0.9993561,0.000007647676,0.00027852962,0.00021736031,0.000012252681,0.00012813888],"domain_scores_gemma":[0.999679,0.000015716556,0.00015301564,0.00013242433,6.1063776e-7,0.00001920908],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007892984,0.00009014387,0.00019821864,0.000024687773,0.000052400082,0.0000073295587,0.00011543084,0.00010225282,0.00021944256],"category_scores_gemma":[0.000005055636,0.000084756386,0.000032124786,0.000055386983,0.0000736146,0.000034741013,0.000022230339,0.00007264856,0.000035441473],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022179014,0.00008711556,0.012338935,0.0000018034108,0.000004713066,6.7904364e-7,0.0004913511,0.000018241606,0.1597329,0.807667,0.0014563067,0.018178795],"study_design_scores_gemma":[0.00047297656,0.000051476174,0.83969384,0.0000036448746,0.0000024307114,0.0000014672701,0.00005411608,0.0000044716217,0.0018103686,0.12893961,0.028867016,0.00009856281],"about_ca_topic_score_codex":0.0002487106,"about_ca_topic_score_gemma":0.00005412197,"teacher_disagreement_score":0.8273549,"about_ca_system_score_codex":0.00003138171,"about_ca_system_score_gemma":0.000004757181,"threshold_uncertainty_score":0.3456265},"labels":[],"label_agreement":null},{"id":"W1954285518","doi":"10.1128/aem.01525-15","title":"Feed Fermentation with Reuteran- and Levan-Producing Lactobacillus reuteri Reduces Colonization of Weanling Pigs by Enterotoxigenic Escherichia coli","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Alberta Livestock and Meat Agency; Canada Research Chairs","keywords":"Lactobacillus reuteri; Biology; Enterotoxigenic Escherichia coli; Escherichia coli; Microbiology; Enterotoxin; Fermentation; Feces; Cecum; Weanling; Food science; Ileum; Lactobacillus; Bacteria; Colonization; Biochemistry; Gene","score_opus":0.009928627188360283,"score_gpt":0.1774353361557568,"score_spread":0.1675067089673965,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1954285518","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989759,0.00028542697,0.0000151771355,0.00017682044,0.00003925271,0.0002974083,0.000120910496,0.000014171406,0.000074983014],"genre_scores_gemma":[0.9986211,0.0002015863,0.00027461763,0.00014776338,0.000027464243,0.000013158411,0.0006612436,0.0000021620278,0.00005092722],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992631,0.000032585165,0.00017933297,0.00031102326,0.000041821655,0.0001721295],"domain_scores_gemma":[0.99975425,0.000016063068,0.00011378805,0.00004196545,0.0000053290278,0.00006858102],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010654141,0.00013786292,0.00017223714,0.000009818732,0.00009286527,0.000020854706,0.00006945941,0.00009197139,0.000018821784],"category_scores_gemma":[0.0000020156522,0.00006673723,0.0000136533,0.00005958857,0.0001808536,0.000053076306,0.00008189893,0.00006871251,0.000002409191],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000121312994,0.00006810642,0.003561774,0.000005723592,0.00002259862,3.95348e-7,0.00030951638,0.0000037884922,0.9927327,0.000013344522,0.00006010127,0.003100635],"study_design_scores_gemma":[0.0018176634,0.001961657,0.06230079,0.000039095343,0.00006470307,0.00004962812,0.0031047082,0.000051378323,0.9265449,0.00012084208,0.0034666688,0.000477935],"about_ca_topic_score_codex":0.000035776025,"about_ca_topic_score_gemma":0.000015572628,"teacher_disagreement_score":0.06618778,"about_ca_system_score_codex":0.000032706834,"about_ca_system_score_gemma":0.000003396202,"threshold_uncertainty_score":0.27214652},"labels":[],"label_agreement":null},{"id":"W1963723273","doi":"10.1128/aem.02530-14","title":"Phosphotransferase System-Dependent Extracellular Growth of Listeria monocytogenes Is Regulated by Alternative Sigma Factors σ<sup>L</sup>and σ<sup>H</sup>","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institutes of Health; U.S. Public Health Service; University of British Columbia","keywords":"PEP group translocation; Listeria monocytogenes; Strain (injury); Sigma factor; Permease; Biology; Extracellular; Phosphotransferase; Virulence; Microbiology; Mutant; Gene expression; Gene; Food science; Chemistry; Biochemistry; Bacteria; Genetics","score_opus":0.011792846762939065,"score_gpt":0.20720992480586944,"score_spread":0.19541707804293038,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1963723273","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995157,0.0020788158,0.00096191774,0.00002888817,0.000072610754,0.00045475896,0.0010532034,0.000020430163,0.00017236608],"genre_scores_gemma":[0.99693096,0.00071585097,0.00019908434,0.00017120194,0.00007972591,0.00003766823,0.0016109531,0.000064607666,0.00018994161],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99788636,0.00013739907,0.0005343842,0.0009236869,0.00008446835,0.00043369993],"domain_scores_gemma":[0.9991553,0.00003551568,0.00017518023,0.00046467406,0.000011043851,0.00015827929],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000181364,0.00049754325,0.00053777406,0.000050430124,0.00014244579,0.000023136039,0.00029423198,0.0004639048,0.000058261954],"category_scores_gemma":[0.000005286969,0.00046352818,0.00010562613,0.00003918812,0.00058841973,0.000009907888,0.00040614023,0.00012540162,0.000007952087],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003563308,0.00010074925,0.0034554119,0.00009185732,0.00024283721,0.0000025314487,0.00055425806,0.00014245989,0.99418485,0.00015397341,0.000119068085,0.00059569936],"study_design_scores_gemma":[0.001710069,0.00043959753,0.00037741207,0.00001807511,0.00009199745,0.00009306492,0.00078843493,0.0003111773,0.99017626,0.000036101792,0.0054707513,0.0004870459],"about_ca_topic_score_codex":0.00009125094,"about_ca_topic_score_gemma":0.0000019191173,"teacher_disagreement_score":0.005351683,"about_ca_system_score_codex":0.000057626858,"about_ca_system_score_gemma":0.000012041948,"threshold_uncertainty_score":0.99978167},"labels":[],"label_agreement":null},{"id":"W1963871485","doi":"10.1128/aem.06498-11","title":"Characterization of <i>bla</i> <sub>CMY-2</sub> Plasmids in Salmonella and Escherichia coli Isolates from Food Animals in Canada","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph; Public Health Agency of Canada","funders":"","keywords":"Plasmid; Escherichia coli; Replicon; Salmonella; Biology; Microbiology; Enterobacteriaceae; Bacteria; Genetics; Gene","score_opus":0.0039020117898562637,"score_gpt":0.14181395620121115,"score_spread":0.13791194441135488,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1963871485","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99922854,0.00024874377,0.0000126954255,0.0000062118042,0.00003539555,0.00015549683,0.0002463858,0.0000015206697,0.00006503052],"genre_scores_gemma":[0.9984894,0.00081448274,0.0001359417,0.000098828634,0.000013324857,0.00000628562,0.00042539238,0.000013838479,0.0000025111535],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992411,0.000027784834,0.0002334155,0.00030424926,0.000016116423,0.00017729757],"domain_scores_gemma":[0.9997546,0.000009509659,0.00009023466,0.00011048407,0.0000014023033,0.0000337383],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003872022,0.00014041911,0.00020248472,0.000021326918,0.000016468817,0.0000028734214,0.00006876116,0.00014000987,0.000013082391],"category_scores_gemma":[0.00000176951,0.00014530044,0.0000116431565,0.000026871221,0.00015499274,0.0000028902361,0.00009998713,0.00006140544,0.0000010101988],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012301028,0.000031973126,0.17336334,0.000007872893,0.000015862344,0.0000012088202,0.00006492369,4.3801643e-7,0.8261767,0.000009526081,0.000004453709,0.00020068348],"study_design_scores_gemma":[0.00034238602,0.0000728688,0.36263335,0.0000060846146,0.0000040941463,0.000002682355,0.00012916916,0.0000023319492,0.6365996,0.000019830599,0.00009027323,0.0000973126],"about_ca_topic_score_codex":0.010553676,"about_ca_topic_score_gemma":0.057786502,"teacher_disagreement_score":0.18957709,"about_ca_system_score_codex":0.000032441534,"about_ca_system_score_gemma":0.00003356346,"threshold_uncertainty_score":0.99603516},"labels":[],"label_agreement":null},{"id":"W1964948648","doi":"10.1128/aem.07055-11","title":"Effect of Streptococcus salivarius K12 on the In Vitro Growth of Candida albicans and Its Protective Effect in an Oral Candidiasis Model","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":125,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"University of Otago","keywords":"Candida albicans; Microbiology; Streptococcus salivarius; In vitro; Biology; Streptococcus; Bacteria; Biochemistry","score_opus":0.007212755387934513,"score_gpt":0.23360681036018305,"score_spread":0.22639405497224854,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1964948648","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984427,0.00017813615,0.0000036759548,0.000023947316,0.000009096468,0.001158911,0.00007871253,0.000003058324,0.000101774735],"genre_scores_gemma":[0.9997325,0.000033176024,0.000010520072,0.00006440501,0.000008300741,0.00009676005,0.000039565515,0.000009591442,0.000005160141],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99917746,0.00013589863,0.00018700796,0.00022475413,0.0000400927,0.0002347986],"domain_scores_gemma":[0.99954414,0.00020524941,0.000060423507,0.00012919724,0.0000017897356,0.000059213347],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043409388,0.00015540338,0.0004192871,0.00005368061,0.00002567717,0.0000015030554,0.00004369002,0.00011955577,0.000016656528],"category_scores_gemma":[0.00001820791,0.00009664028,0.00003113569,0.000050338153,0.0002622519,0.00003293271,0.000043751417,0.00017859106,0.0000012160214],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018400425,0.00013898363,0.245843,0.00008546223,0.000017077522,0.0000010539013,0.00037498475,0.0000030322994,0.7504166,0.00008005095,0.0000013179833,0.0011984237],"study_design_scores_gemma":[0.0017491081,0.0012304183,0.30163127,0.000026388903,0.00003966681,0.0000039383217,0.00017421818,0.00010484441,0.694922,0.000030761785,0.0000011691751,0.00008622017],"about_ca_topic_score_codex":0.00023480515,"about_ca_topic_score_gemma":0.00010437681,"teacher_disagreement_score":0.05578829,"about_ca_system_score_codex":0.00007085315,"about_ca_system_score_gemma":0.000010119868,"threshold_uncertainty_score":0.3940876},"labels":[],"label_agreement":null},{"id":"W1965556555","doi":"10.1128/aem.05155-11","title":"Analysis of Clostridium botulinum Serotype E Strains by Using Multilocus Sequence Typing, Amplified Fragment Length Polymorphism, Variable-Number Tandem-Repeat Analysis, and Botulinum Neurotoxin Gene Sequencing","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Botulinum Toxin and Related Neurological Disorders","field":"Medicine","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Science and Technology Directorate; U.S. Public Health Service; Joint Genome Institute; California Department of Public Health; U.S. Department of Homeland Security; U.S. Department of Energy","keywords":"Multilocus sequence typing; Biology; Genetics; Clostridium botulinum; Amplified fragment length polymorphism; Botulism; Sequence analysis; Gene; Microbiology; Genotype; Genetic diversity; Toxin; Population","score_opus":0.025845958131986965,"score_gpt":0.22951131108487755,"score_spread":0.20366535295289057,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1965556555","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996337,0.0005287525,0.001934417,0.000043059365,0.000058462032,0.00050813437,0.00027570623,0.000040507224,0.00027397464],"genre_scores_gemma":[0.9954467,0.0010402955,0.002021628,0.0007585012,0.000018107296,0.000015845611,0.00059272745,0.00003162629,0.000074559815],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99781936,0.00010236652,0.0006170401,0.0008600672,0.00009290354,0.0005082449],"domain_scores_gemma":[0.9990611,0.00005920545,0.0002747031,0.0003659644,0.000009306302,0.00022971629],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00018494752,0.0004052406,0.00094193534,0.00023290669,0.00014531855,0.000010498069,0.00012903597,0.00047410687,0.0006103568],"category_scores_gemma":[0.000007228836,0.00034404304,0.00019847369,0.0005716884,0.00067794905,0.00004421347,0.00017477518,0.0004270153,0.000008114106],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017542172,0.00022408331,0.07521847,0.000017987237,0.0024960448,0.000021707381,0.0002494742,0.00015914353,0.9207209,0.00003878863,0.0000130859535,0.00066491106],"study_design_scores_gemma":[0.0137282945,0.0021530266,0.20326346,0.00009055457,0.049586616,0.0013865932,0.0025892572,0.019300818,0.7028297,0.00047916386,0.0013750569,0.0032174166],"about_ca_topic_score_codex":0.00038466702,"about_ca_topic_score_gemma":0.000012817068,"teacher_disagreement_score":0.21789114,"about_ca_system_score_codex":0.000087943765,"about_ca_system_score_gemma":0.000031154083,"threshold_uncertainty_score":0.9999012},"labels":[],"label_agreement":null},{"id":"W1966390029","doi":"10.1128/aem.02517-05","title":"Biodiversity and Classification of Lactococcal Phages","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":256,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Lactococcus lactis; Lactococcus; Biology; Bacteria; Bacteriophage; Microbiology; Metagenomics; Genome; Siphoviridae; Computational biology; Genetics; Gene; Escherichia coli; Lactic acid","score_opus":0.004789283944480025,"score_gpt":0.17251740896192708,"score_spread":0.16772812501744705,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1966390029","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972686,0.000042018455,0.000037379737,0.00008002677,0.00002455227,0.00010954848,0.00009119566,0.000008329368,0.0023383065],"genre_scores_gemma":[0.99937105,0.00005568917,0.00022584446,0.00007397353,0.000009663973,0.0000039883807,0.00011632385,0.0000030877898,0.000140358],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995563,0.000011261926,0.00010888364,0.00019765514,0.000014429703,0.000111456684],"domain_scores_gemma":[0.9998351,0.000014767283,0.000054762986,0.000069845344,3.4116752e-7,0.00002523413],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000030550458,0.000083629544,0.000097965065,0.000015066999,0.00007469391,0.000005504169,0.000043905857,0.00006695008,0.000626674],"category_scores_gemma":[3.732633e-7,0.00007774002,0.000017267217,0.000021273054,0.00047409046,0.00004560944,0.00012874223,0.00005402037,0.00011262881],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010727247,0.000059349804,0.02210508,0.000002479034,0.0000043315968,4.6611206e-7,0.000036247555,0.000001670991,0.97487736,0.000067925794,0.00070110866,0.0021332386],"study_design_scores_gemma":[0.00031492204,0.00003734742,0.89704275,0.0000013636737,0.000016304763,0.000041156774,0.00012724935,0.000005277582,0.081363246,0.0000764829,0.020865688,0.00010820881],"about_ca_topic_score_codex":0.0001847454,"about_ca_topic_score_gemma":0.000033678232,"teacher_disagreement_score":0.89351416,"about_ca_system_score_codex":0.000028315633,"about_ca_system_score_gemma":7.2321194e-7,"threshold_uncertainty_score":0.6861641},"labels":[],"label_agreement":null},{"id":"W1966433361","doi":"10.1128/aem.02275-12","title":"Evidence of <i>In Vivo</i> Prophage Induction during Clostridium difficile Infection","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":105,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research","keywords":"Prophage; Lysogen; Microbiology; Biology; Virulence; Virology; Clostridium difficile; Bacteriophage; Myoviridae; Antibiotics; Escherichia coli; Genetics; Gene","score_opus":0.018270693805981886,"score_gpt":0.24501671287285953,"score_spread":0.22674601906687764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1966433361","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99728906,0.0016830862,0.000003232795,0.0000705898,0.00008582089,0.0004244531,0.000019915702,0.000016558472,0.00040727117],"genre_scores_gemma":[0.99750584,0.0020853854,0.000037758036,0.000031385698,0.00013972736,0.000034832603,0.000030747036,0.00001664546,0.00011764502],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989752,0.000032525535,0.00027704035,0.00025670885,0.0000752543,0.0003832525],"domain_scores_gemma":[0.99961084,0.000040694285,0.000071283466,0.00017006513,0.0000038946455,0.00010321445],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015338343,0.00015673928,0.0002793125,0.00013039834,0.00005564692,0.0000037192895,0.000039346614,0.00016679148,0.00025618938],"category_scores_gemma":[0.0000121164985,0.00014159556,0.000048581176,0.00012255393,0.0002202888,0.000071945266,0.00010983271,0.0002443943,0.00003000243],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028111928,0.00037519,0.045243002,0.00013231378,0.000018192943,0.000003120691,0.00014241097,0.0000026277376,0.95249987,0.000019155475,0.000034486533,0.0012485264],"study_design_scores_gemma":[0.00092020264,0.0001894396,0.06267859,0.000065782406,0.000029171482,0.00019466424,0.00014946572,0.000002401094,0.93520594,0.0000028091574,0.0004469835,0.000114552764],"about_ca_topic_score_codex":0.00006347454,"about_ca_topic_score_gemma":0.000003761762,"teacher_disagreement_score":0.017435586,"about_ca_system_score_codex":0.00016393197,"about_ca_system_score_gemma":0.000018220506,"threshold_uncertainty_score":0.57741},"labels":[],"label_agreement":null},{"id":"W1967701714","doi":"10.1128/aem.01288-09","title":"Lineage and Host Source Are Both Correlated with Levels of Shiga Toxin 2 Production by <i>Escherichia coli</i> O157:H7 Strains","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Lethbridge; Public Health Agency of Canada","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Health Canada; Public Health Agency; Public Health Agency of Canada","keywords":"Biology; Shiga toxin; Prophage; Escherichia coli; Virulence; STX2; Microbiology; Lineage (genetic); Genotype; Shiga-like toxin; Gene; Pathogen; Toxin; Genetics; Bacteriophage","score_opus":0.004551419005233738,"score_gpt":0.18799632461866822,"score_spread":0.1834449056134345,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1967701714","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976929,0.0012911754,0.00015689571,0.00017095194,0.00001813044,0.00030932954,0.0001706876,0.000009396875,0.00018057246],"genre_scores_gemma":[0.9976913,0.0008232059,0.00032752875,0.00041839233,0.00004164809,0.0000150183305,0.00016827835,0.000016257214,0.0004983699],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99908394,0.000036957525,0.00015969209,0.00042378463,0.000041931125,0.00025370976],"domain_scores_gemma":[0.9996596,0.000008182979,0.00010184735,0.00015999019,0.000005255798,0.0000651366],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008671302,0.00019503247,0.00022267197,0.000019019537,0.00009844082,0.000007760076,0.00007679539,0.00016068024,0.000008638503],"category_scores_gemma":[0.0000069733746,0.0001654949,0.000021132133,0.00004569851,0.0005036719,0.000003808016,0.00009889908,0.00013938642,0.0000013689641],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012842099,0.00012782641,0.0030008894,0.000014042474,0.00006707839,9.095143e-7,0.0000950444,0.0000072564776,0.9950135,0.000007879813,0.0008319864,0.0007052142],"study_design_scores_gemma":[0.0012047146,0.0010149808,0.0805118,0.000015067776,0.00003511326,0.00003718169,0.0007356751,0.00000768238,0.9047376,0.000004586431,0.011386665,0.00030894665],"about_ca_topic_score_codex":0.0000060353746,"about_ca_topic_score_gemma":0.000009381923,"teacher_disagreement_score":0.09027586,"about_ca_system_score_codex":0.000012901583,"about_ca_system_score_gemma":0.000011572537,"threshold_uncertainty_score":0.67486864},"labels":[],"label_agreement":null},{"id":"W1968289569","doi":"10.1128/aem.71.12.8201-8206.2005","title":"Distribution of Typical Freshwater Bacterial Groups Is Associated with pH, Temperature, and Lake Water Retention Time","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":428,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Montréal","funders":"","keywords":"Betaproteobacteria; Actinobacteria; Verrucomicrobia; Ecology; Taxon; Proteobacteria; Biology; Environmental science; Bacteria","score_opus":0.0029280049835712025,"score_gpt":0.1503245137742725,"score_spread":0.1473965087907013,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1968289569","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99902093,0.0000125498445,0.000003504639,0.0001451193,0.000023845661,0.00014948103,0.0004777392,0.000011292141,0.0001555317],"genre_scores_gemma":[0.99330354,0.000029838971,0.000060541966,0.00032900853,0.000025650339,0.000007294944,0.006052022,0.000009082769,0.00018304704],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999214,0.00008502708,0.00016891524,0.00026225575,0.000024905203,0.00024490093],"domain_scores_gemma":[0.9997485,0.000027687973,0.000054440115,0.00012375256,0.0000011179656,0.000044458156],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00011045693,0.00015355447,0.00022032081,0.000012311269,0.00014756188,0.0000063661305,0.00008351243,0.00024489008,0.008041676],"category_scores_gemma":[0.0000014681979,0.00010803016,0.000023239218,0.000022207845,0.0007742431,0.000058429614,0.0002343232,0.00016915484,0.00018291225],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021330321,0.00011070683,0.0032368347,0.00000247453,0.000031162428,6.556524e-7,0.00020774994,0.0000054114907,0.994155,0.000018136057,0.0017662386,0.00025236534],"study_design_scores_gemma":[0.0038498978,0.00097077753,0.27624968,0.000018142644,0.00013888894,0.0001822494,0.00010680997,0.000043337746,0.6141439,0.000594798,0.102950275,0.00075122784],"about_ca_topic_score_codex":0.000008982802,"about_ca_topic_score_gemma":0.00037268022,"teacher_disagreement_score":0.38001102,"about_ca_system_score_codex":0.00004146372,"about_ca_system_score_gemma":0.0000013950076,"threshold_uncertainty_score":0.9928651},"labels":[],"label_agreement":null},{"id":"W1969682692","doi":"10.1128/aem.02791-13","title":"Abilities of the mCP Agar Method and CRENAME Alpha Toxin-Specific Real-Time PCR Assay To Detect Clostridium perfringens Spores in Drinking Water","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministère des Ressources naturelles et des Forêts; Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Clostridium perfringens; Microbiology; Biology; Clostridiaceae; Real-time polymerase chain reaction; Agar; Agar plate; Polymerase chain reaction; Molecular biology; Bacteria; Gene; Toxin; Genetics","score_opus":0.008617878442990404,"score_gpt":0.22179155982571952,"score_spread":0.21317368138272913,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969682692","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970048,0.0003207234,0.000013174179,0.0007283953,0.000043236647,0.00089285814,0.00003751073,0.000016473701,0.0009428202],"genre_scores_gemma":[0.99768317,0.000721625,0.00075806683,0.00014748242,0.000070035785,0.00007258225,0.000055693,0.00003197783,0.00045934497],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983074,0.0001065525,0.00040009175,0.0005306518,0.00011083462,0.0005444485],"domain_scores_gemma":[0.99926114,0.00016921549,0.000052614287,0.00036761988,0.00000886472,0.00014052489],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035932983,0.0002665714,0.0004860094,0.00013566329,0.00010370071,0.000019459389,0.00014935706,0.00019505863,0.0007033933],"category_scores_gemma":[0.000011384802,0.00017218631,0.00007851934,0.00008964495,0.00042539084,0.000029968218,0.00046117033,0.000294045,0.00010281081],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012096986,0.0000750979,0.0039335107,0.000038365702,0.000036596775,0.0000048428356,0.00073875865,0.000007211314,0.9878647,0.000025866926,0.00028595616,0.006868124],"study_design_scores_gemma":[0.0009470071,0.00023440333,0.029078627,0.00003630891,0.00002754768,0.00011022531,0.00074159924,0.000013188241,0.96333396,0.00011121342,0.0051618945,0.00020400035],"about_ca_topic_score_codex":0.00021581227,"about_ca_topic_score_gemma":0.000015455038,"teacher_disagreement_score":0.025145115,"about_ca_system_score_codex":0.00013282501,"about_ca_system_score_gemma":0.000016421634,"threshold_uncertainty_score":0.77016634},"labels":[],"label_agreement":null},{"id":"W1970147395","doi":"10.1128/aem.01453-14","title":"Biosynthesis of Novel Pyoverdines by Domain Substitution in a Nonribosomal Peptide Synthetase of Pseudomonas aeruginosa","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Marsden Fund; Royal Society Te Apārangi; Victoria University of Wellington; Royal Society; University of Victoria; University of Otago","keywords":"Nonribosomal peptide; Pyoverdine; Adenylylation; Threonine; Siderophore; Serine; Peptide; Biology; Biosynthesis; Biochemistry; Residue (chemistry); Enzyme; Gene","score_opus":0.005042156495120767,"score_gpt":0.18433569356807297,"score_spread":0.1792935370729522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970147395","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985389,0.0003044753,0.00006823918,0.0002544216,0.000034700155,0.0002743129,0.00026641184,0.00000796325,0.0002505872],"genre_scores_gemma":[0.99822795,0.00017711932,0.0011433447,0.0001461246,0.000034331697,0.000002402435,0.00022529498,0.00001238505,0.000031055246],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99900424,0.00003079383,0.00035992762,0.00034078577,0.000046182202,0.00021804542],"domain_scores_gemma":[0.9995205,0.000090405534,0.00014332609,0.00018856263,0.0000041973117,0.0000530553],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018976805,0.00018760398,0.0004803918,0.00009331508,0.00003011874,0.0000021942305,0.000072573195,0.00017109256,0.00008041838],"category_scores_gemma":[0.000019720126,0.0001473372,0.000060315542,0.00007019335,0.00053412106,0.000025475685,0.00007049331,0.000108026456,0.0000065936383],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025839734,0.00045510367,0.0026406662,0.00008266664,0.000038892285,0.0000011547279,0.000051920004,0.0000017214393,0.9940527,0.0004566114,0.00014652062,0.0018136444],"study_design_scores_gemma":[0.0014454788,0.00014672005,0.0046313107,0.000053292966,0.000057375728,0.00009143054,0.000114723625,0.000009025231,0.98767626,0.000030453797,0.005585017,0.00015892854],"about_ca_topic_score_codex":0.00007562444,"about_ca_topic_score_gemma":0.000008554558,"teacher_disagreement_score":0.0063764583,"about_ca_system_score_codex":0.000033534714,"about_ca_system_score_gemma":0.000008473837,"threshold_uncertainty_score":0.60082364},"labels":[],"label_agreement":null},{"id":"W1970695822","doi":"10.1128/aem.02711-07","title":"Global Response to Desiccation Stress in the Soil Actinomycete <i>Rhodococcus jostii</i> RHA1","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Steroid Chemistry and Biochemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":145,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Genome British Columbia; Genome Canada","keywords":"Desiccation; Biology; Transcriptome; Gene; Bacteria; Rhodococcus; Desiccation tolerance; Gene expression; Microbiology; Botany; Biochemistry; Genetics","score_opus":0.005212903586689065,"score_gpt":0.19123926025232477,"score_spread":0.1860263566656357,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970695822","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99864155,0.00021306239,0.00004321429,0.00018353942,0.000029657731,0.0001713739,0.0001578542,0.000005568336,0.0005541924],"genre_scores_gemma":[0.99796456,0.000114358896,0.00009930428,0.0010912518,0.0000934125,0.000047259375,0.0004612437,0.000008072108,0.00012051919],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99910325,0.000056647863,0.00015742259,0.00039339124,0.00003710893,0.00025220413],"domain_scores_gemma":[0.9996031,0.000024034576,0.000045016473,0.0002672783,0.0000022852832,0.00005828581],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012914093,0.00017366889,0.00011904665,0.000010946703,0.00010811617,0.000008327883,0.00020565884,0.0001841021,0.0000114326285],"category_scores_gemma":[0.000010999514,0.00014258125,0.000034578887,0.00005249976,0.00017974447,0.0000020228586,0.00014251257,0.000080815575,0.000014571481],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005003822,0.00007656188,0.013512787,0.0000055133373,0.00001157174,0.000008004144,0.00009705725,0.000026325939,0.98479855,0.0000016443274,0.0006081632,0.00035345793],"study_design_scores_gemma":[0.00062416436,0.0001107,0.030368429,0.0000037930984,0.0000074927216,0.0004406946,0.00044183023,6.6363447e-7,0.9580516,0.000008508218,0.009744898,0.00019719909],"about_ca_topic_score_codex":0.000007661637,"about_ca_topic_score_gemma":0.000007140028,"teacher_disagreement_score":0.026746903,"about_ca_system_score_codex":0.000031469965,"about_ca_system_score_gemma":0.000018346434,"threshold_uncertainty_score":0.5814295},"labels":[],"label_agreement":null},{"id":"W1970778844","doi":"10.1128/aem.00694-11","title":"Role of Alcohols in Growth, Lipid Composition, and Membrane Fluidity of Yeasts, Bacteria, and Archaea","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Lipid metabolism and biosynthesis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":219,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Energy Biosciences Institute; McGill University","keywords":"Membrane fluidity; Membrane; Membrane lipids; Archaea; Bacteria; Biochemistry; Biology; Chemistry; Cell membrane; Lipid metabolism","score_opus":0.004576302903859807,"score_gpt":0.15753598652340647,"score_spread":0.15295968361954668,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970778844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988684,0.0007800851,0.00000587249,0.000005833601,0.000016565833,0.000100217614,0.0000972688,0.0000014046549,0.00012434408],"genre_scores_gemma":[0.9978448,0.001300566,0.0006258944,0.000040548824,0.000028748058,0.0000057115203,0.00014171381,0.00000667861,0.000005337951],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994686,0.000029550654,0.000164759,0.00021158076,0.000014291911,0.00011120764],"domain_scores_gemma":[0.9998065,0.000008169243,0.000056409463,0.00009167011,0.0000020899517,0.00003515284],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007812822,0.00010037147,0.00018621882,0.000028789453,0.00001844679,0.0000012823658,0.0000494062,0.000113552385,0.000018242252],"category_scores_gemma":[0.0000016970116,0.00009029144,0.000015870943,0.000013405798,0.00038147272,0.0000025963222,0.00013725604,0.000032763488,7.7716214e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009425025,0.00008509238,0.014381562,0.00002580705,0.000021440103,1.5944417e-7,0.00022530938,2.2740826e-8,0.9829485,0.00008746041,0.000004059526,0.0021263608],"study_design_scores_gemma":[0.00042007558,0.000060065962,0.0864947,0.000004826477,0.0000134894235,0.000019928559,0.00011821747,2.880323e-7,0.9119788,0.00004237859,0.00076271757,0.000084530795],"about_ca_topic_score_codex":0.000029011175,"about_ca_topic_score_gemma":0.0000062135537,"teacher_disagreement_score":0.072113134,"about_ca_system_score_codex":0.000001938691,"about_ca_system_score_gemma":0.0000037037646,"threshold_uncertainty_score":0.3681978},"labels":[],"label_agreement":null},{"id":"W1970871385","doi":"10.1128/aem.04167-13","title":"Detection of Streptococcus suis in Bioaerosols of Swine Confinement Buildings","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":99,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec; Fonds de Recherche du Québec - Santé","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research","keywords":"Streptococcus suis; Indoor bioaerosol; Serotype; Aerosolization; Bacteria; Microbiology; Biology; Outbreak; Pathogen; Virology; Colony-forming unit; Virulence","score_opus":0.004604922432143101,"score_gpt":0.19957504910995014,"score_spread":0.19497012667780703,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970871385","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988442,0.000058469075,0.00012866696,0.000020202731,0.00002466232,0.00036337515,0.000022446156,0.000005734801,0.0005322175],"genre_scores_gemma":[0.9996366,0.000052622796,0.00013882917,0.00003264024,0.000011910457,0.000037235026,0.000059241356,0.00000627258,0.000024632087],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99946386,0.000011178797,0.00022260776,0.00016985669,0.000020175943,0.0001123104],"domain_scores_gemma":[0.99975675,0.000027191874,0.00007887509,0.000103737395,0.0000022338927,0.000031215706],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000051059167,0.00009469403,0.00024393044,0.00006574158,0.000016628743,9.105353e-7,0.000019076939,0.00007844526,0.00012494184],"category_scores_gemma":[0.0000028088216,0.00007939327,0.000033654913,0.00004503134,0.00018261533,0.000007774793,0.00003235718,0.000053938194,0.0000053923704],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000044460776,0.00021459677,0.18538332,0.000019284578,0.00003154327,3.59354e-7,0.000026912967,0.000002066654,0.80439156,0.00010404562,0.0000027583917,0.009779079],"study_design_scores_gemma":[0.0020534967,0.0005198315,0.23131603,0.000016372025,0.000035312103,0.000014455558,0.00008494906,0.000007316176,0.76486135,0.0000417019,0.0009922016,0.000056981444],"about_ca_topic_score_codex":0.00010543647,"about_ca_topic_score_gemma":0.000013092413,"teacher_disagreement_score":0.04593271,"about_ca_system_score_codex":0.000028269282,"about_ca_system_score_gemma":0.0000030047065,"threshold_uncertainty_score":0.32375637},"labels":[],"label_agreement":null},{"id":"W1971059297","doi":"10.1128/aem.68.8.3795-3801.2002","title":"Role of <i>Pseudomonas putida</i> Indoleacetic Acid in Development of the Host Plant Root System","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":1794,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Pseudomonas putida; Bacteria; Biology; Mutant; Auxin; Seedling; Rhizosphere; Botany; Microbiology; Biochemistry; Gene","score_opus":0.006123003647498024,"score_gpt":0.1427698146142067,"score_spread":0.1366468109667087,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971059297","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985776,0.00034077658,1.6980465e-7,0.000035803278,0.000030921907,0.00013077396,0.00016356955,0.0000045482643,0.00071585027],"genre_scores_gemma":[0.999804,0.000035922276,0.000028006994,0.000027070242,0.000009408676,0.0000082271,0.000062985295,7.1021566e-7,0.000023645132],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99942523,0.00003460911,0.00023691717,0.00013539105,0.000025955047,0.00014186665],"domain_scores_gemma":[0.99979895,0.00003197116,0.000100818696,0.000048172788,0.0000013149855,0.000018751616],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006225449,0.00009443877,0.00016347003,0.000010105223,0.000081954095,0.0000033786328,0.00014596242,0.00007644633,0.00008246398],"category_scores_gemma":[9.651865e-7,0.000037013448,0.000028980863,0.00005277409,0.00012735117,0.00001612464,0.00013343514,0.000100654404,0.000018658935],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012092379,0.000107937914,0.0064501064,0.0000062182157,0.000008474288,2.415534e-7,0.00020244539,7.7763036e-7,0.98922646,0.000029634526,0.000019227831,0.0039363834],"study_design_scores_gemma":[0.00017149105,0.000039175666,0.1875392,0.000028945185,0.000004774144,0.000066321554,0.0015788298,0.000005422883,0.80309665,0.0000038587445,0.00737817,0.00008713989],"about_ca_topic_score_codex":0.000056647325,"about_ca_topic_score_gemma":0.0001991602,"teacher_disagreement_score":0.1861298,"about_ca_system_score_codex":0.00003036567,"about_ca_system_score_gemma":0.0000015251859,"threshold_uncertainty_score":0.15093645},"labels":[],"label_agreement":null},{"id":"W1971070777","doi":"10.1128/aem.66.10.4187-4192.2000","title":"Urea Hydrogen Peroxide Reduces the Numbers of Lactobacilli, Nourishes Yeast, and Leaves No Residues in the Ethanol Fermentation","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Meat and Animal Product Quality","field":"Agricultural and Biological Sciences","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Chemistry; Hydrogen peroxide; Food science; Fermentation; Urea; Lactobacillus fermentum; Lactobacillus paracasei; Lactobacillus plantarum; Dry matter; Ethanol; Lactobacillus; Bacteria; Biochemistry; Lactic acid; Botany; Biology","score_opus":0.010655996361032124,"score_gpt":0.18978088230235463,"score_spread":0.1791248859413225,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971070777","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973653,0.00032678054,1.46753045e-8,0.0008528878,0.00000903099,0.00017552929,0.00004448033,0.0000048804213,0.0012211003],"genre_scores_gemma":[0.9987133,0.0006279176,0.000010446429,0.00036041826,0.000057898833,0.000010482014,0.000070332455,7.33419e-7,0.00014843835],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993764,0.00009559783,0.00015014723,0.00020263909,0.000037330068,0.00013788207],"domain_scores_gemma":[0.9998317,0.00006485817,0.00004368332,0.000041003812,0.0000010961603,0.000017679637],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002174799,0.00009645972,0.000119133474,0.0000037575971,0.000114254675,0.000012228387,0.00010567555,0.000061050756,0.00026295625],"category_scores_gemma":[0.0000025419906,0.000031476484,0.000022651138,0.000037854454,0.00034746187,0.000031515352,0.000032607553,0.00008067027,0.000019452775],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041038922,0.000039850507,0.006325814,0.0000028556356,0.000006522113,3.3459958e-7,0.000646077,5.5922817e-7,0.98121154,0.000030583316,0.00009505106,0.011599758],"study_design_scores_gemma":[0.0002290795,0.00018569853,0.5664685,0.00000778449,0.000015995261,0.000031184838,0.0048035947,8.541555e-7,0.4207933,0.00045787243,0.006844145,0.00016200347],"about_ca_topic_score_codex":0.00019090007,"about_ca_topic_score_gemma":0.00006703776,"teacher_disagreement_score":0.56041825,"about_ca_system_score_codex":0.000006001211,"about_ca_system_score_gemma":0.0000010764055,"threshold_uncertainty_score":0.28791866},"labels":[],"label_agreement":null},{"id":"W1971320242","doi":"10.1128/aem.06175-11","title":"Butyric Acid- and Dimethyl Disulfide-Assimilating Microorganisms in a Biofilter Treating Air Emissions from a Livestock Facility","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Odor and Emission Control Technologies","field":"Chemical Engineering","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Dimethyl disulfide; Actinobacteria; Betaproteobacteria; Stable-isotope probing; Chemistry; Biofilter; Environmental chemistry; Butyric acid; Dimethyl trisulfide; Firmicutes; Food science; Microbiology; Biology; Sulfur; Biochemistry; Microorganism; Bacteria; Organic chemistry; 16S ribosomal RNA; Waste management","score_opus":0.010627059889965502,"score_gpt":0.1798265777789109,"score_spread":0.16919951788894538,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971320242","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980141,0.00057063764,0.00054922386,0.000050635903,0.000024231284,0.00014969546,0.0001916259,0.00009779106,0.0003520511],"genre_scores_gemma":[0.99594617,0.00008936404,0.0036714154,0.000090753674,0.000012898109,0.00002790355,0.00009807493,0.00001540649,0.000048029287],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989017,0.000020341207,0.00027577844,0.00045919488,0.000024902578,0.00031807114],"domain_scores_gemma":[0.999561,0.000105463456,0.000059012316,0.0001867872,0.0000010624625,0.00008668469],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000063902226,0.00023955273,0.0003102499,0.000059274164,0.000092236456,0.0000065029867,0.00011584387,0.00027390968,0.00020452817],"category_scores_gemma":[0.00002418846,0.00019903977,0.00003580959,0.000052271746,0.00021419594,0.00004126394,0.00029609504,0.00027343776,0.00002025663],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027765009,0.000054797212,0.022310177,0.000008234568,0.000022872995,0.0000039401175,0.0007910013,0.0000025144484,0.9661679,0.00002235826,0.000011052268,0.010577342],"study_design_scores_gemma":[0.001128064,0.00005430769,0.042192467,0.000026764677,0.000032055916,0.000021022901,0.0018645428,0.00018442236,0.9531446,0.0006868516,0.0002994751,0.00036541212],"about_ca_topic_score_codex":0.00012558413,"about_ca_topic_score_gemma":0.000006685713,"teacher_disagreement_score":0.019882292,"about_ca_system_score_codex":0.000045200744,"about_ca_system_score_gemma":0.0000035831674,"threshold_uncertainty_score":0.81166065},"labels":[],"label_agreement":null},{"id":"W1971915308","doi":"10.1128/aem.70.9.5290-5297.2004","title":"Multiple Nonidentical Reductive-Dehalogenase-Homologous Genes Are Common in <i>Dehalococcoides</i>","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Porphyrin Metabolism and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":130,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ministère de l'Énergie et des Ressources Naturelles; Deutsche Forschungsgemeinschaft; Strategic Environmental Research and Development Program; National Science Foundation","keywords":"Dehalogenase; Gene; Biology; Genetics; Dehalococcoides; Strain (injury); Genome; Chemistry","score_opus":0.0034575782961163686,"score_gpt":0.18168995165952884,"score_spread":0.17823237336341247,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971915308","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99586177,0.003285613,0.00011968038,0.000074266245,0.00008834299,0.00023573599,0.000085476764,0.000010435086,0.00023870601],"genre_scores_gemma":[0.9971752,0.0012493003,0.00033409047,0.0005216502,0.000069894675,0.000045840796,0.0005498739,0.00002223982,0.000031911073],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988778,0.00003607841,0.00021228031,0.0004970552,0.000030040574,0.0003466955],"domain_scores_gemma":[0.99962395,0.000010188342,0.0000649733,0.00022376815,0.0000018949714,0.00007520016],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000082112645,0.00021236743,0.00024158774,0.000043510092,0.00007791962,0.000008650536,0.00013770045,0.00023441997,0.000015476857],"category_scores_gemma":[0.000005707446,0.00020839606,0.000052021933,0.00003806614,0.0004717629,0.00000360201,0.00019284607,0.00011858246,0.00003479253],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008630639,0.0002185998,0.031545658,0.0000062692848,0.000019709347,0.000013666714,0.000041131658,0.00012129332,0.96633124,0.00014094592,0.000059505124,0.0014156661],"study_design_scores_gemma":[0.004450596,0.00020130383,0.10437804,0.000008714408,0.000031914107,0.0003014333,0.0010789876,0.0000022931058,0.87530345,0.0013029596,0.012340237,0.0006000571],"about_ca_topic_score_codex":0.00006902586,"about_ca_topic_score_gemma":0.00014401494,"teacher_disagreement_score":0.09102778,"about_ca_system_score_codex":0.000025520214,"about_ca_system_score_gemma":0.000013159152,"threshold_uncertainty_score":0.8498145},"labels":[],"label_agreement":null},{"id":"W1972164532","doi":"10.1128/aem.00231-12","title":"Two Boundaries Separate Borrelia burgdorferi Populations in North America","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Borrelia burgdorferi; Biology; Lyme disease; Ixodes scapularis; Population; Gene flow; Tick; Population genetics; Evolutionary biology; Borrelia; Founder effect; Locus (genetics); Genetics; Ecology; Genetic variation; Ixodidae; Gene; Virology; Demography; Allele; Haplotype","score_opus":0.009063493560023598,"score_gpt":0.2212983390023604,"score_spread":0.2122348454423368,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1972164532","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943638,0.0038179026,0.00003253015,0.000055056196,0.00045679632,0.00024004003,0.00026520118,0.00005298218,0.0007156805],"genre_scores_gemma":[0.9969478,0.00014533584,0.00007616917,0.00059890473,0.000043320626,0.000064604246,0.0019412616,0.000020864954,0.0001617205],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99878156,0.00008137671,0.0002581725,0.00030793535,0.000010738158,0.0005602305],"domain_scores_gemma":[0.9996336,0.000040027167,0.000084980966,0.00019147176,0.0000018649079,0.000048039477],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000054805932,0.00023603342,0.00029049627,0.000091067835,0.0002748047,0.000016213122,0.0000946555,0.00015155622,0.00066702074],"category_scores_gemma":[0.0000050360236,0.00022671826,0.0000468332,0.00009136749,0.0009460337,0.00008402175,0.0001392203,0.0002168202,0.0010110488],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006571991,0.0002932464,0.39550063,0.000004574406,0.0000639641,0.0000015523482,0.00051621586,0.00002554334,0.5998035,0.00083810126,0.001035894,0.0018510649],"study_design_scores_gemma":[0.0019067724,0.0001167128,0.73113626,0.000004124967,0.000075407064,0.00020312285,0.000579753,0.0000014505796,0.008706059,0.00013529237,0.25662464,0.0005104034],"about_ca_topic_score_codex":0.0003378448,"about_ca_topic_score_gemma":0.00028182444,"teacher_disagreement_score":0.5910974,"about_ca_system_score_codex":0.00008158283,"about_ca_system_score_gemma":0.000016530343,"threshold_uncertainty_score":0.99976677},"labels":[],"label_agreement":null},{"id":"W1973095139","doi":"10.1128/aem.00846-13","title":"Characterization of Escherichia coli O157:H7 Strains Isolated from Supershedding Cattle","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health; Public Health Agency of Canada","funders":"Wellcome Trust; University of Nebraska-Lincoln","keywords":"Biology; Pulsed-field gel electrophoresis; Escherichia coli; Genotype; Microbiology; Shiga toxin; Feces; Population; Typing; Multilocus sequence typing; Phage typing; Strain (injury); Shiga-like toxin; Genetics; Gene","score_opus":0.005003925248301931,"score_gpt":0.18959304155163442,"score_spread":0.1845891163033325,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1973095139","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99879926,0.00017468425,0.00018794909,0.00005830012,0.00003527996,0.00026341426,0.00019353787,0.0000066559774,0.00028092996],"genre_scores_gemma":[0.99715066,0.00047645796,0.00029711338,0.00018648864,0.000052207954,0.000048028192,0.0016141479,0.000016553397,0.00015831692],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99927044,0.0000318307,0.00016126593,0.00029096554,0.000028347797,0.00021714605],"domain_scores_gemma":[0.9997249,0.000010150479,0.000059288046,0.0001481473,0.0000056436393,0.00005183136],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000039431223,0.00014033652,0.0001684749,0.000019725478,0.0000664033,0.000008866197,0.00009645496,0.00014679,0.00015097181],"category_scores_gemma":[0.0000048440147,0.0001317918,0.000029793644,0.00003095689,0.00028304933,0.000004488152,0.00019616568,0.00007853629,0.000022824373],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002050153,0.00005482454,0.0038786468,0.00000663758,0.00007688323,1.7673686e-7,0.00011322804,0.000001455391,0.99518687,0.000016741453,0.00008875622,0.0005552926],"study_design_scores_gemma":[0.00057692546,0.00018805404,0.11676983,0.0000045670813,0.000015975424,0.0000027960987,0.00048183327,0.00003445601,0.8783492,0.000026010473,0.0033455307,0.00020483627],"about_ca_topic_score_codex":0.00007306487,"about_ca_topic_score_gemma":0.0000073124925,"teacher_disagreement_score":0.116837665,"about_ca_system_score_codex":0.000013293563,"about_ca_system_score_gemma":0.000009954578,"threshold_uncertainty_score":0.5374314},"labels":[],"label_agreement":null},{"id":"W1973640306","doi":"10.1128/aem.68.10.5057-5063.2002","title":"Rapid and Sensitive Enumeration of Viable Diluted Cells of Members of the Family <i>Enterobacteriaceae</i> in Freshwater and Drinking Water","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Water Treatment and Disinfection","field":"Environmental Science","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Polytechnique Montréal; Natural Sciences and Engineering Research Council of Canada","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Water Network","keywords":"Enumeration; Enterobacteriaceae; Biology; Microbiology; Fish <Actinopterygii>; Viable but nonculturable; Filtration (mathematics); Bacteria; Escherichia coli; Biochemistry; Fishery; Gene","score_opus":0.0037635521846863798,"score_gpt":0.13633414499480054,"score_spread":0.13257059281011416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1973640306","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993781,0.000048080932,0.0000048842703,0.000019194078,0.000028070663,0.00016865329,0.000026580543,0.0000019802092,0.00032449045],"genre_scores_gemma":[0.9995986,0.00018635415,0.000096074604,0.000043770655,0.0000029101448,0.0000036639062,0.000027428052,0.0000049540654,0.000036194502],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999486,0.00003365788,0.00016749623,0.00017016946,0.000026928305,0.000115709016],"domain_scores_gemma":[0.99983823,0.000012754188,0.00005921401,0.000072979594,4.948126e-7,0.000016310401],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005282671,0.00009618917,0.0001505275,0.000021024047,0.000033888315,0.000003048718,0.000027897242,0.000058779184,0.00016936849],"category_scores_gemma":[2.412752e-7,0.00006104854,0.000016841319,0.000023373364,0.0003903643,0.00004833564,0.00013660835,0.000036213278,0.0000036512822],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019735224,0.0000639426,0.07428152,0.000007187394,0.000010905387,2.628803e-7,0.0010328236,0.00003188845,0.9240446,0.0000026325106,0.000018676901,0.00048580483],"study_design_scores_gemma":[0.0006385358,0.000065469016,0.06122117,0.000007700975,0.000017562932,0.000007791027,0.00017781455,0.00005235966,0.93730825,0.00003059826,0.0004070435,0.00006568909],"about_ca_topic_score_codex":0.0001870216,"about_ca_topic_score_gemma":0.000065992215,"teacher_disagreement_score":0.013263643,"about_ca_system_score_codex":0.000019352039,"about_ca_system_score_gemma":2.712252e-7,"threshold_uncertainty_score":0.24894872},"labels":[],"label_agreement":null},{"id":"W1974262472","doi":"10.1128/aem.05114-11","title":"Impact of Feed Efficiency and Diet on Adaptive Variations in the Bacterial Community in the Rumen Fluid of Cattle","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":211,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Residual feed intake; Biology; Temperature gradient gel electrophoresis; Feed conversion ratio; Rumen; Animal science; Dry matter; Productivity; Population; Host (biology); Food science; Bacteria; Biotechnology; 16S ribosomal RNA; Ecology; Fermentation; Genetics; Body weight","score_opus":0.0214345263200296,"score_gpt":0.20098994945272813,"score_spread":0.17955542313269854,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974262472","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989848,0.000020982168,4.9049845e-7,0.000053631225,0.000008145292,0.00016489447,0.00014217375,0.0000011028335,0.00062378467],"genre_scores_gemma":[0.9997588,0.000048700607,0.0000056733766,0.00006820898,0.0000072928306,0.000011696655,0.000098496384,3.2917168e-7,8.231438e-7],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99948233,0.0002042831,0.00011594518,0.0000858834,0.000015665833,0.000095900316],"domain_scores_gemma":[0.9996613,0.00023723677,0.000048858998,0.000041794934,0.0000011822307,0.000009625361],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016604469,0.00006633515,0.00011779858,0.000009630623,0.000066373446,0.0000018769069,0.0001194295,0.000050144703,0.000057933106],"category_scores_gemma":[0.0000032852392,0.00002134475,0.000021766904,0.00005255878,0.0003160825,0.000012333025,0.000044519926,0.000089540576,0.0000014902105],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024103603,0.0005520037,0.010906598,0.0000011590109,0.00000413721,1.552099e-7,0.0017337406,8.896591e-7,0.985227,0.00077655574,0.000014619943,0.0005421369],"study_design_scores_gemma":[0.00025837813,0.0014414011,0.9929011,0.0000024745486,0.0000032198773,0.0000041056223,0.0020855633,0.0000015311358,0.002581762,0.0006531262,0.00002636361,0.00004097226],"about_ca_topic_score_codex":0.00080536085,"about_ca_topic_score_gemma":0.00011654219,"teacher_disagreement_score":0.9826452,"about_ca_system_score_codex":0.000007861338,"about_ca_system_score_gemma":0.0000014061545,"threshold_uncertainty_score":0.12174701},"labels":[],"label_agreement":null},{"id":"W1974382831","doi":"10.1128/aem.07771-11","title":"Role of Aspergillus niger <i>acrA</i> in Arsenic Resistance and Its Use as the Basis for an Arsenic Biosensor","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"bioluminescence and chemiluminescence research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research","keywords":"Arsenite; Arsenic; Arsenate; Efflux; Biology; Biosensor; Aspergillus niger; Arsenic contamination of groundwater; Biochemistry; Microbiology; Chemistry","score_opus":0.009164690836188469,"score_gpt":0.21906261063041488,"score_spread":0.2098979197942264,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974382831","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962727,0.0031165774,0.0000019836248,0.00007051158,0.000019212588,0.00030468375,0.000104642924,0.0000025453676,0.00010717579],"genre_scores_gemma":[0.99739945,0.0017047962,0.00012290732,0.00024301384,0.000067388544,0.000050762115,0.00018928837,0.000015774787,0.00020664412],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99910235,0.000034394838,0.00017021796,0.00030238042,0.000032279666,0.00035840028],"domain_scores_gemma":[0.9996302,0.00003628898,0.00005350278,0.00019979612,0.000005338519,0.00007485377],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015595436,0.00014808752,0.00016087577,0.000025197009,0.00006874893,0.000007810906,0.000114911054,0.00018880285,0.000008018999],"category_scores_gemma":[0.000014216537,0.00011398241,0.00003624174,0.000038154732,0.00033079312,0.000012452517,0.00011457041,0.00008078678,0.0000041918174],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014465959,0.00009785375,0.008006106,0.000015220351,0.000017820299,1.6272215e-7,0.00011182096,2.3645893e-7,0.99066734,0.00012589686,0.000061888415,0.0007509864],"study_design_scores_gemma":[0.00045440206,0.00012004367,0.007914745,0.0000071213412,0.000013001329,0.00003011752,0.0007438364,0.0000027297003,0.96840495,0.000025882428,0.022119915,0.00016325232],"about_ca_topic_score_codex":0.000013220638,"about_ca_topic_score_gemma":0.00004405266,"teacher_disagreement_score":0.022262396,"about_ca_system_score_codex":0.000011567758,"about_ca_system_score_gemma":0.000010580306,"threshold_uncertainty_score":0.4648068},"labels":[],"label_agreement":null},{"id":"W1974985820","doi":"10.1128/aem.71.3.1616-1625.2005","title":"Genomic Comparisons of <i>Salmonella enterica</i> Serovar Dublin, Agona, and Typhimurium Strains Recently Isolated from Milk Filters and Bovine Samples from Ireland, Using a <i>Salmonella</i> Microarray","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Enterprise Ireland","keywords":"Prophage; Serotype; Salmonella; Biology; Microbiology; Salmonella enterica; Pathogenicity island; Genomic island; Virulence; Strain (injury); genomic DNA; Virology; Gene; Escherichia coli; Bacteria; Genetics; Bacteriophage","score_opus":0.01655776323513104,"score_gpt":0.19253180762410374,"score_spread":0.1759740443889727,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974985820","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929496,0.004073662,0.00003558987,0.0003847794,0.00007605069,0.00025099708,0.0021612304,0.000027727989,0.00004036048],"genre_scores_gemma":[0.9929081,0.0025261154,0.0017511556,0.00095901126,0.00016301403,0.0000065949635,0.0016615688,0.0000069226635,0.000017507793],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99810416,0.00012399245,0.0005217449,0.0007611578,0.00004359125,0.00044534213],"domain_scores_gemma":[0.99918765,0.00027584637,0.00024333053,0.00011756074,0.0000050439735,0.00017057176],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001191385,0.00036992956,0.00065421604,0.000023197663,0.00016967539,0.000023291863,0.00018274602,0.0003142952,0.00023744562],"category_scores_gemma":[0.0000039573874,0.00021038891,0.000070071874,0.00006554016,0.0007103349,0.000052939016,0.00027917046,0.00020344765,0.0000150414735],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002017766,0.00011046632,0.08645503,0.0000045631277,0.000089974616,0.0000020386017,0.00019300432,0.00000846184,0.9078385,0.000005734818,0.000289195,0.004801226],"study_design_scores_gemma":[0.0033663688,0.0008555744,0.82251185,0.00005791517,0.0003437403,0.0002469536,0.0032952062,0.00071774644,0.11895359,0.00033938725,0.047833223,0.0014784357],"about_ca_topic_score_codex":0.0011751775,"about_ca_topic_score_gemma":0.000258889,"teacher_disagreement_score":0.78888494,"about_ca_system_score_codex":0.00003588648,"about_ca_system_score_gemma":0.0000045490774,"threshold_uncertainty_score":0.8579411},"labels":[],"label_agreement":null},{"id":"W1975106791","doi":"10.1128/aem.00649-14","title":"Characterization of a Nitrilase and a Nitrile Hydratase from Pseudomonas sp. Strain UW4 That Converts Indole-3-Acetonitrile to Indole-3-Acetic Acid","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme Catalysis and Immobilization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; University of Waterloo; European Bioinformatics Institute; University of Guelph","keywords":"Nitrilase; Nitrile hydratase; Indole test; Nitrile; Acetonitrile; Pseudomonas; Indole-3-acetic acid; Strain (injury); Chemistry; Acetic acid; Microbiology; Organic chemistry; Biochemistry; Bacteria; Biology; Gene","score_opus":0.004233170200826458,"score_gpt":0.1728143207968725,"score_spread":0.16858115059604606,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975106791","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99691206,0.00022616136,0.001150878,0.000034677047,0.000045511188,0.000320926,0.0012525589,0.000007002947,0.000050218503],"genre_scores_gemma":[0.9871132,0.0002549947,0.00020666307,0.0005526968,0.00007139396,0.000038475846,0.011704501,0.000022827186,0.000035294775],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99897844,0.00006087176,0.00023795504,0.00047596698,0.0000422817,0.00020446806],"domain_scores_gemma":[0.9995186,0.00001657139,0.00012842135,0.00022667318,0.0000053234244,0.00010445812],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010728825,0.00021280925,0.0002834776,0.00005624694,0.00006818647,0.000015119272,0.0000953774,0.00020592603,0.00005348097],"category_scores_gemma":[0.000009426449,0.00020699963,0.0000382454,0.00004858293,0.00021296763,0.000007693227,0.00019076029,0.00006882875,0.000012197925],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012694237,0.00007431566,0.0032203607,0.000013175328,0.000037269874,4.799983e-7,0.00009753836,0.0000033276215,0.99439126,0.000021324526,0.00006401033,0.0019499946],"study_design_scores_gemma":[0.0010819803,0.00023300228,0.0092117395,0.000009610632,0.000035955545,0.000013982498,0.00015035651,0.000013773089,0.9811067,0.000023754634,0.007894655,0.00022447345],"about_ca_topic_score_codex":0.000013758254,"about_ca_topic_score_gemma":0.000006997382,"teacher_disagreement_score":0.0132845435,"about_ca_system_score_codex":0.000012100892,"about_ca_system_score_gemma":0.000010196942,"threshold_uncertainty_score":0.84411997},"labels":[],"label_agreement":null},{"id":"W1975824918","doi":"10.1128/aem.02202-13","title":"Wastewater Effluent Impacts Ammonia-Oxidizing Prokaryotes of the Grand River, Canada","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Waterloo","funders":"","keywords":"Effluent; Nitrification; Temperature gradient gel electrophoresis; Environmental chemistry; Archaea; Wastewater; Anammox; Ammonia monooxygenase; Water column; Sediment; Microbial population biology; Biology; Anoxic waters; Ecology; Environmental science; 16S ribosomal RNA; Chemistry; Bacteria; Denitrification; Nitrogen; Environmental engineering","score_opus":0.0027001304636420217,"score_gpt":0.14070196732113838,"score_spread":0.13800183685749637,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975824918","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989895,0.00011707872,7.0129613e-7,0.00014064657,0.000069891976,0.00041791776,0.000033061202,0.000006620105,0.00022456644],"genre_scores_gemma":[0.9987108,0.000032584503,0.00072632486,0.00020323448,0.000012432215,0.000024583043,0.000031361506,0.000012720855,0.0002459405],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991048,0.00003364168,0.00019022092,0.0002722393,0.000072857554,0.00032623237],"domain_scores_gemma":[0.999625,0.000021541657,0.00007934254,0.0001950565,6.0561047e-7,0.000078407975],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000043932287,0.0001918762,0.0001827404,0.000010914361,0.0001324688,0.000008894269,0.00016960563,0.00006673664,0.00048423142],"category_scores_gemma":[8.7628996e-7,0.00011578273,0.000043447635,0.00003795589,0.00052706193,0.000052663876,0.00034331356,0.00008100042,0.00008989748],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010449809,0.000045179175,0.046834633,0.0000053142007,0.000027297936,0.0000012254766,0.00019619455,0.000015644006,0.9513214,0.000004154084,0.00087003584,0.0006684532],"study_design_scores_gemma":[0.00065037876,0.000045043886,0.15239751,0.00000574794,0.000027730248,0.0000492467,0.0001474151,0.000004289268,0.84396756,0.00015901696,0.0023778912,0.0001681752],"about_ca_topic_score_codex":0.06261745,"about_ca_topic_score_gemma":0.010149516,"teacher_disagreement_score":0.10735386,"about_ca_system_score_codex":0.00012494442,"about_ca_system_score_gemma":0.000008596724,"threshold_uncertainty_score":0.9436247},"labels":[],"label_agreement":null},{"id":"W1976237619","doi":"10.1128/aem.69.4.2133-2138.2003","title":"Bacteriophages of<i>Erwinia amylovora</i>","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":136,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Western University; Brock University; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; College of Engineering, Michigan State University; Université Laval; Michigan State University","keywords":"Erwinia; Podoviridae; Biology; Fire blight; Bacteriophage; Microbiology; Myoviridae; Pantoea; Prophage; Pantoea agglomerans; Bacteria; Botany; Escherichia coli; Genetics; Pseudomonas","score_opus":0.0028741269512668564,"score_gpt":0.16461068227392123,"score_spread":0.16173655532265438,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976237619","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9847137,0.00008722644,0.000056887384,0.000027551952,0.00010676944,0.00013322078,0.00005999871,0.000013695336,0.014800967],"genre_scores_gemma":[0.99793714,0.00013742289,0.0009968666,0.00031097635,0.00001097744,0.000010366266,0.00004928073,0.000014546544,0.0005324342],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99920356,0.000031804964,0.00020824019,0.0002974347,0.000024792686,0.00023418097],"domain_scores_gemma":[0.99966186,0.000025809417,0.00008099589,0.00016665758,4.958663e-7,0.000064178224],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00006906553,0.00015823205,0.0001916185,0.00002074545,0.0000846665,0.0000080494665,0.00009155396,0.00009542669,0.005289279],"category_scores_gemma":[0.0000021851524,0.0001452992,0.000045831723,0.000045907094,0.00045359854,0.00006099955,0.00011711229,0.000101178426,0.00042594006],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000096439735,0.0000787018,0.0021187128,0.0000034400616,0.000013165602,0.0000014042404,0.00010909228,0.000004184438,0.9947004,0.00017017173,0.00034401557,0.002447112],"study_design_scores_gemma":[0.0006466631,0.0001104519,0.069738165,0.0000051638704,0.00003228614,0.00024024562,0.00030586869,0.0000011532929,0.656727,0.00016682224,0.27169925,0.0003269162],"about_ca_topic_score_codex":0.000033966804,"about_ca_topic_score_gemma":0.000007955671,"teacher_disagreement_score":0.33797336,"about_ca_system_score_codex":0.000040015857,"about_ca_system_score_gemma":0.0000023919692,"threshold_uncertainty_score":0.99562},"labels":[],"label_agreement":null},{"id":"W1976304065","doi":"10.1128/aem.00231-14","title":"Safely Coupling Livestock and Crop Production Systems: How Rapidly Do Antibiotic Resistance Genes Dissipate in Soil following a Commercial Application of Swine or Dairy Manure?","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":127,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Health Canada","keywords":"Manure; Livestock; Crop; Biology; Agronomy; Dairy cattle; Antibiotic resistance; Fertilizer; Agriculture; Resistance (ecology); Biotechnology; Veterinary medicine; Animal science; Antibiotics; Ecology; Medicine; Microbiology","score_opus":0.010954485710939838,"score_gpt":0.22474191139200703,"score_spread":0.21378742568106718,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976304065","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99791986,0.00071698095,0.00031398085,0.00022403878,0.000096082615,0.00050259114,0.000023403083,0.00001656965,0.00018650253],"genre_scores_gemma":[0.9986228,0.00062071136,0.00034706868,0.00009929294,0.000049151728,0.000011736148,0.00006192224,0.000022637536,0.00016472563],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985896,0.000056481724,0.00031178826,0.0005950829,0.00009010007,0.0003569723],"domain_scores_gemma":[0.99946576,0.000057901947,0.00015229764,0.00020725299,5.7997113e-7,0.00011621519],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028456858,0.00025677885,0.00036991955,0.000043740874,0.00014435753,0.000022538416,0.00012797613,0.00013771851,0.000020462112],"category_scores_gemma":[0.000007825189,0.00021270472,0.000036115372,0.000089733396,0.0006654812,0.000121794605,0.00023591863,0.00015044765,0.000021519218],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000119974124,0.0001603856,0.08483257,0.00008597845,0.000016613516,0.0000026331732,0.00014239187,0.00051444606,0.90803707,0.000042224878,0.00002482032,0.0060209027],"study_design_scores_gemma":[0.0036661187,0.00042850318,0.7032647,0.00028884047,0.000178235,0.00012986647,0.0011906695,0.002731598,0.2788424,0.00021654037,0.007873625,0.0011889043],"about_ca_topic_score_codex":0.000053855492,"about_ca_topic_score_gemma":0.000070129696,"teacher_disagreement_score":0.6291947,"about_ca_system_score_codex":0.00009523725,"about_ca_system_score_gemma":0.0000026439343,"threshold_uncertainty_score":0.8673847},"labels":[],"label_agreement":null},{"id":"W1976467817","doi":"10.1128/aem.07694-11","title":"Cloning, Baeyer-Villiger Biooxidations, and Structures of the Camphor Pathway 2-Oxo-Δ <sup>3</sup> -4,5,5-Trimethylcyclopentenylacetyl-Coenzyme A Monooxygenase of Pseudomonas putida ATCC 17453","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre in Green Chemistry and Catalysis; McGill University; National Research Council Canada; Biotechnology Research Institute","funders":"Argonne National Laboratory; Basic Energy Sciences; National Research Council Canada; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Eli Lilly and Company; U.S. Department of Energy","keywords":"Pseudomonas putida; Stereochemistry; Monooxygenase; Cofactor; Flavin adenine dinucleotide; Substrate (aquarium); Escherichia coli; Biochemistry; Chemistry; Isomerase; Enzyme; Biology; Cytochrome P450","score_opus":0.0037819799292975053,"score_gpt":0.17413462083443174,"score_spread":0.17035264090513422,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976467817","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99470377,0.0045397272,0.00013229913,0.000037630165,0.00010989618,0.00026327188,0.00017314672,0.000005497996,0.00003475967],"genre_scores_gemma":[0.99761224,0.00093291124,0.00089049677,0.00008147318,0.00014269566,0.000012519698,0.00020833194,0.00001945188,0.0000998628],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990814,0.000045339326,0.00026940802,0.00030741026,0.000038672482,0.00025779704],"domain_scores_gemma":[0.9994936,0.000007690384,0.0001378459,0.00028963218,0.0000064410942,0.00006477281],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015741607,0.0002056906,0.00023731732,0.000038597977,0.00008188932,0.000004928356,0.00012118259,0.0001965282,0.000021655702],"category_scores_gemma":[0.000012635042,0.00015183778,0.00006513952,0.000055260807,0.0003779905,0.0000056015047,0.00021740008,0.000101720216,0.0000021113824],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039196682,0.00006803093,0.0027136174,0.00002578891,0.000067218214,7.73623e-8,0.00016182716,0.0000548706,0.99521774,0.00018851018,0.00031857964,0.0011445173],"study_design_scores_gemma":[0.0004361196,0.00005993452,0.0064520487,0.0000059221998,0.00003602191,0.00006918075,0.00025778543,0.0000030471788,0.9724408,0.000020678468,0.020054836,0.00016362974],"about_ca_topic_score_codex":0.000051497485,"about_ca_topic_score_gemma":0.0000022091544,"teacher_disagreement_score":0.022776969,"about_ca_system_score_codex":0.0000111229965,"about_ca_system_score_gemma":0.000012128607,"threshold_uncertainty_score":0.6191765},"labels":[],"label_agreement":null},{"id":"W1976696370","doi":"10.1128/aem.68.12.6152-6161.2002","title":"Novel Food-Grade Plasmid Vector Based on Melibiose Fermentation for the Genetic Engineering of <i>Lactococcus lactis</i>","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Dairy Farmers of Canada","keywords":"Melibiose; Lactococcus lactis; Biology; Plasmid; Pediococcus acidilactici; Shuttle vector; Selectable marker; Gene; Lactococcus; Fermentation; Expression vector; Biochemistry; Genetics; Recombinant DNA; Bacteria; Vector (molecular biology); Enzyme","score_opus":0.01180416732303779,"score_gpt":0.15853910491237522,"score_spread":0.14673493758933742,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976696370","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981187,0.00014672692,0.00016515206,0.00041452612,0.00008693699,0.0005296707,0.0004663187,0.000013984938,0.000057978054],"genre_scores_gemma":[0.99895424,0.00006916584,0.00033089047,0.00041270108,0.00004615288,0.00004900504,0.00012445037,0.0000020669527,0.0000113311435],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99944335,0.0000069620555,0.0001392246,0.00020172159,0.00003034831,0.00017841285],"domain_scores_gemma":[0.9997103,0.00014794918,0.000060232578,0.000047392685,0.0000013589313,0.000032727257],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000038229184,0.00012430655,0.00011785145,0.000008285473,0.000094911105,0.000009268175,0.00009848074,0.00008243191,0.00009167482],"category_scores_gemma":[0.000001984399,0.00005148716,0.000047134672,0.000038351547,0.0000806045,0.000011779172,0.000031443706,0.00006481875,0.000004877959],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002887773,0.0001416178,0.00016337828,0.0000055463997,0.0000184381,8.018459e-8,0.00001876185,0.00020162706,0.9947373,0.00009838892,0.000061516264,0.004524444],"study_design_scores_gemma":[0.0025527384,0.0029065083,0.121473975,0.000023712191,0.00010093497,0.000019935544,0.00026524547,0.011283221,0.8371611,0.00005595449,0.023565318,0.0005913162],"about_ca_topic_score_codex":0.000003816065,"about_ca_topic_score_gemma":0.000003315049,"teacher_disagreement_score":0.15757619,"about_ca_system_score_codex":0.000018384037,"about_ca_system_score_gemma":6.8124893e-7,"threshold_uncertainty_score":0.20995854},"labels":[],"label_agreement":null},{"id":"W1977174192","doi":"10.1128/aem.00096-07","title":"Casein Fermentate of <i>Lactobacillus animalis</i> DPC6134 Contains a Range of Novel Propeptide Angiotensin-Converting Enzyme Inhibitors","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Protein Hydrolysis and Bioactive Peptides","field":"Biochemistry, Genetics and Molecular Biology","cited_by":151,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Teagasc; Science Foundation Ireland; University of Manitoba","keywords":"Peptide; Casein; Chemistry; Chromatography; Fractionation; Biochemistry; Angiotensin-converting enzyme; Enzyme; Biology","score_opus":0.006623742807437769,"score_gpt":0.1948733739510632,"score_spread":0.18824963114362542,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977174192","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99811786,0.0006952677,0.00035086044,0.000027428097,0.000032761636,0.00033546184,0.00021121479,0.0000050972776,0.00022404641],"genre_scores_gemma":[0.99860924,0.00012984443,0.000637462,0.00025103264,0.00006584656,0.000008591562,0.00023166598,0.00001983113,0.000046496632],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99880993,0.000022705191,0.00041259584,0.00038526548,0.000054427022,0.0003150535],"domain_scores_gemma":[0.9994682,0.000017211787,0.00024817948,0.00018540066,0.000010738588,0.00007028279],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027643173,0.0002155888,0.00031930566,0.00005665619,0.000055130065,0.0000040296873,0.000106136016,0.00019302258,0.000012800515],"category_scores_gemma":[0.000007370946,0.00018723581,0.000102397826,0.000052866628,0.00051904185,0.000004687591,0.0002048473,0.00008469327,0.0000019669312],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000346455,0.0001931489,0.009610856,0.000020230851,0.00010539754,0.0000036155216,0.00009662458,0.000004292828,0.9880437,0.000029538693,0.000051187664,0.0014949001],"study_design_scores_gemma":[0.0013927494,0.00037948103,0.0066644107,0.000012846667,0.000036587724,0.00007443005,0.00036617895,0.0000038925987,0.98867476,0.0000049432133,0.0021835002,0.00020621574],"about_ca_topic_score_codex":0.00009780837,"about_ca_topic_score_gemma":0.00004182598,"teacher_disagreement_score":0.0029464453,"about_ca_system_score_codex":0.000025787349,"about_ca_system_score_gemma":0.000013078261,"threshold_uncertainty_score":0.7635255},"labels":[],"label_agreement":null},{"id":"W1977199565","doi":"10.1128/aem.71.12.8991-8994.2005","title":"Molecular Forensic Profiling of <i>Cryptosporidium</i> Species and Genotypes in Raw Water","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; BC Centre for Disease Control; University of British Columbia; University of Calgary","funders":"","keywords":"Cryptosporidium; Biology; Genotype; DNA profiling; Restriction fragment length polymorphism; Feces; Computational biology; DNA; Microbiology; Genetics; Gene","score_opus":0.003056087221680904,"score_gpt":0.16695308565981637,"score_spread":0.16389699843813546,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977199565","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971894,0.0015144668,0.00008788402,0.000065362794,0.00006482008,0.00015330258,0.000033576896,0.0000084489575,0.0008827503],"genre_scores_gemma":[0.99882865,0.00031839492,0.00036497804,0.00017813845,0.000013496736,0.000011587269,0.00022572035,0.00000818929,0.000050842067],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993383,0.000023679357,0.00019180798,0.00020462577,0.00000652542,0.0002350589],"domain_scores_gemma":[0.9998183,0.000043907832,0.000033155593,0.00009007065,0.0000018846125,0.000012634176],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000068684625,0.00012401011,0.00020762677,0.000056761346,0.000053471933,0.0000026880573,0.000039378618,0.00015908039,0.00011069048],"category_scores_gemma":[0.0000026339783,0.00009795653,0.000020985959,0.000018672881,0.00046267002,0.000020554082,0.00008269989,0.00011289881,0.000058285186],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028687102,0.0000698514,0.010774757,0.000007781018,0.000027284726,0.0000018609088,0.0001775768,0.000042388125,0.9852438,0.0022781938,0.000027444099,0.00132036],"study_design_scores_gemma":[0.0008322766,0.000060715312,0.007574155,0.000004446108,0.000019428891,0.000093708,0.00020579767,0.0000018323371,0.98544514,0.0001893,0.005451817,0.00012138648],"about_ca_topic_score_codex":0.000012690422,"about_ca_topic_score_gemma":0.000007589237,"teacher_disagreement_score":0.0054243733,"about_ca_system_score_codex":0.000018895791,"about_ca_system_score_gemma":0.000004068903,"threshold_uncertainty_score":0.39945513},"labels":[],"label_agreement":null},{"id":"W1977969929","doi":"10.1128/aem.07726-11","title":"Biology and Genome Sequence of Streptococcus mutans Phage M102AD","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"National Institute of Dental and Craniofacial Research; Canadian Institutes of Health Research","keywords":"Streptococcus mutans; Biology; Genome; Virulence; Lysogenic cycle; Microbiology; Bacteriophage; Gene; Phage display; Phagemid; Antiserum; Genetics; Bacteria; Escherichia coli; Antibody","score_opus":0.007827628816306786,"score_gpt":0.21912918170088252,"score_spread":0.21130155288457575,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977969929","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971449,0.00026227455,0.000057794525,0.000034391385,0.00009813931,0.00019454572,0.00034414927,0.000011969503,0.0018518337],"genre_scores_gemma":[0.99871576,0.0002470958,0.0004025948,0.00021514953,0.00003310138,0.000016898777,0.00018907832,0.000011609223,0.00016871373],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991722,0.000026026677,0.00019182099,0.0002671627,0.000016141723,0.00032662123],"domain_scores_gemma":[0.999651,0.0000286076,0.00008482721,0.00013824234,5.879938e-7,0.00009669811],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000075792464,0.00015855428,0.00019260694,0.00002316201,0.000087316876,0.0000049883897,0.000088019675,0.00011709558,0.001877725],"category_scores_gemma":[0.0000016126766,0.00014173542,0.000025867605,0.000041714557,0.00080455554,0.000090801106,0.00028684133,0.00010681613,0.0001456624],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008532713,0.00007492557,0.018102976,0.0000043414966,0.0000153536,4.995986e-7,0.00027654367,0.0000014351917,0.97755075,0.00014916809,0.000026518572,0.0037889904],"study_design_scores_gemma":[0.0011250658,0.00028049064,0.5352724,0.00000807007,0.00008585993,0.0004385734,0.0008622297,0.000006683227,0.28703323,0.00023567845,0.17396177,0.00068992865],"about_ca_topic_score_codex":0.00008735039,"about_ca_topic_score_gemma":0.000009218927,"teacher_disagreement_score":0.6905175,"about_ca_system_score_codex":0.000048822614,"about_ca_system_score_gemma":0.0000017411473,"threshold_uncertainty_score":0.9990347},"labels":[],"label_agreement":null},{"id":"W1979452963","doi":"10.1128/aem.71.6.3085-3092.2005","title":"Increase in Xylanase Production by <i>Streptomyces lividans</i> through Simultaneous Use of the Sec- and Tat-Dependent Protein Export Systems","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"","keywords":"Xylanase; Signal peptide; Secretion; Biochemistry; Biology; Plasmid; Recombinant DNA; Streptomyces; Enzyme; Secretory protein; Streptomycetaceae; Gene; Bacteria; Genetics; Actinomycetales","score_opus":0.0037634200064402762,"score_gpt":0.1665299812536711,"score_spread":0.16276656124723082,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979452963","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986402,0.0006436781,0.000029371284,0.00013269922,0.000048358103,0.00039488063,0.00008805027,0.0000044976464,0.00001828903],"genre_scores_gemma":[0.9984384,0.00044512926,0.000070022434,0.00015175305,0.00006883653,0.000037433103,0.0003355294,0.000010506999,0.00044237537],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99930966,0.000048591897,0.00018363583,0.0003134194,0.000028579268,0.00011611403],"domain_scores_gemma":[0.999715,0.0000057089774,0.00009577971,0.00015728435,0.0000030535766,0.000023174782],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006456909,0.000114727336,0.0001084209,0.000012335762,0.00004609917,0.000008671958,0.00004735595,0.000104973995,0.00000630209],"category_scores_gemma":[0.0000096924205,0.000091366186,0.000014322025,0.00002326237,0.00016940916,0.000008677239,0.000083284016,0.00006451636,0.000001382202],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005149642,0.00009669668,0.0037629374,0.000017875884,0.000012098071,3.5945314e-7,0.00008837227,0.00012242068,0.9949378,0.0000096889,0.00017126129,0.00072899717],"study_design_scores_gemma":[0.00031541518,0.000055632223,0.0008120948,0.000008787737,0.000008836293,0.00007326642,0.00018902826,0.000012124079,0.96491504,0.0000027710093,0.033492826,0.000114152615],"about_ca_topic_score_codex":0.000037018104,"about_ca_topic_score_gemma":0.000016377147,"teacher_disagreement_score":0.033321563,"about_ca_system_score_codex":0.000014447749,"about_ca_system_score_gemma":0.000006093024,"threshold_uncertainty_score":0.3725805},"labels":[],"label_agreement":null},{"id":"W1981813945","doi":"10.1128/aem.00817-08","title":"Isolation and Characterization of Carnocyclin A, a Novel Circular Bacteriocin Produced by <i>Carnobacterium maltaromaticum</i> UAL307","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":165,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Advanced Foods and Materials Network","keywords":"Bacteriocin; Peptide; Edman degradation; Peptide sequence; Trypsin; Biochemistry; Molecular mass; Chemistry; Chymotrypsin; Biology; Proteases; Bacteria; Enzyme; Genetics","score_opus":0.005822533359126281,"score_gpt":0.14698383174280014,"score_spread":0.14116129838367386,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981813945","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990633,0.000079869395,0.000025359677,0.0001312655,0.000033266377,0.00023286657,0.00039332826,0.000012636361,0.00002811107],"genre_scores_gemma":[0.9977786,0.00034208526,0.00008644662,0.00018853549,0.000030968375,0.000009543322,0.0015345606,0.0000018091663,0.000027469267],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992875,0.000018996232,0.00021291671,0.00028348068,0.000030245954,0.00016684728],"domain_scores_gemma":[0.99977237,0.000017380324,0.000114100374,0.00004445442,0.000002854049,0.000048815193],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000058040023,0.00013535678,0.00019299403,0.000009119846,0.00011336144,0.000007534399,0.000059296523,0.00012261723,0.000041422813],"category_scores_gemma":[0.0000012803573,0.00007023357,0.000023499584,0.000043823075,0.00019375153,0.000046338795,0.000075280215,0.00006449883,0.0000037460088],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018937753,0.00009506447,0.007890605,0.000008899516,0.000014053752,3.11212e-7,0.000097759425,7.7608206e-8,0.9903305,0.000015693995,0.0000062452623,0.0015218108],"study_design_scores_gemma":[0.0004734469,0.00026416758,0.40081573,0.000009036913,0.000021158641,0.00008686792,0.000109624074,0.0000225511,0.59472233,0.000010595969,0.0032171083,0.0002473757],"about_ca_topic_score_codex":0.000016186536,"about_ca_topic_score_gemma":0.0000012506628,"teacher_disagreement_score":0.3956082,"about_ca_system_score_codex":0.00001297964,"about_ca_system_score_gemma":0.0000018365854,"threshold_uncertainty_score":0.2864042},"labels":[],"label_agreement":null},{"id":"W1982035274","doi":"10.1128/aem.70.9.5373-5382.2004","title":"Biofuel Cells Select for Microbial Consortia That Self-Mediate Electron Transfer","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":1263,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Microbial fuel cell; Microbial population biology; Redox; Alcaligenes; Bacteria; Chemistry; Microbial consortium; Microbiology; Pseudomonas; Biology; Food science; Anode; Environmental chemistry; Microorganism; Electrode; Inorganic chemistry","score_opus":0.0037231842655030527,"score_gpt":0.16140161110939388,"score_spread":0.15767842684389083,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1982035274","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99752295,0.00012836466,0.0005513874,0.00014446041,0.00017074213,0.00083109754,0.00023103016,0.000059609898,0.00036034704],"genre_scores_gemma":[0.9961286,0.000590278,0.0016147679,0.00091208506,0.00008505732,0.000051673025,0.00049803604,0.000034812358,0.00008468819],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99842805,0.00002332085,0.0002578878,0.00062904373,0.000055823442,0.00060586707],"domain_scores_gemma":[0.99962944,0.000033885975,0.000060476563,0.00015543634,0.0000011237395,0.00011965554],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00013639001,0.0003121576,0.00027016568,0.000035934794,0.00020371484,0.000022501577,0.00016959486,0.0002570276,0.00045647452],"category_scores_gemma":[9.1303156e-7,0.00028273466,0.00008951023,0.00006519934,0.00035918324,0.000069175694,0.000093178554,0.00015578936,0.00037417523],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006495827,0.00016644072,0.0010327509,0.000015774496,0.000027271686,0.0000013054148,0.00030590105,0.000045306166,0.99716645,0.000055471046,0.0004680424,0.0006503072],"study_design_scores_gemma":[0.0020192207,0.00022111204,0.0016613045,0.0000030419324,0.00005769534,0.000039732568,0.00005156917,0.0000037797138,0.9559494,0.0003440571,0.03925044,0.00039859852],"about_ca_topic_score_codex":0.000044777367,"about_ca_topic_score_gemma":0.00007303835,"teacher_disagreement_score":0.04121702,"about_ca_system_score_codex":0.00022519445,"about_ca_system_score_gemma":0.000012504413,"threshold_uncertainty_score":0.9999625},"labels":[],"label_agreement":null},{"id":"W1982603999","doi":"10.1128/aem.69.9.5364-5371.2003","title":"Morphological, Host Range, and Genetic Characterization of Two Coliphages","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":106,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Dairy Farmers of Ontario","keywords":"Myoviridae; Biology; Restriction enzyme; Escherichia coli; Bacteriophage; Genetics; Enterobacteriaceae; Genome; DNA; Salmonella; Microbiology; Bacteria; Gene","score_opus":0.004684743807691798,"score_gpt":0.18640867985010473,"score_spread":0.18172393604241294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1982603999","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985737,0.000061858555,0.0001282631,0.000030856856,0.000049144888,0.00017671012,0.00007540422,0.000008594216,0.00089547294],"genre_scores_gemma":[0.9982693,0.0004141294,0.0007653222,0.00029749976,0.00000909103,0.000013535882,0.000049803504,0.000009452756,0.00017182429],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999354,0.000033290573,0.00016351136,0.0002639674,0.000020245949,0.00016500558],"domain_scores_gemma":[0.99975944,0.000017245653,0.00007501881,0.00009806264,5.231683e-7,0.000049719405],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000040746083,0.00012513343,0.00015622069,0.000017558512,0.000082527506,0.000009512246,0.00005526675,0.00007338477,0.0018905752],"category_scores_gemma":[0.0000015331111,0.00011150891,0.000020489448,0.000032815977,0.00047561314,0.00004197026,0.00010686406,0.0000684682,0.000074820695],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008815122,0.00006444298,0.010575605,0.0000031137827,0.000007855255,0.000003084432,0.000066911285,0.0000018218259,0.98810446,0.000047106034,0.000029556246,0.0010872359],"study_design_scores_gemma":[0.00078062445,0.00010678806,0.65629643,0.0000037408483,0.000028994411,0.00048005694,0.0000846749,0.0000039780975,0.32801995,0.000056736113,0.013925155,0.00021288439],"about_ca_topic_score_codex":0.00002396798,"about_ca_topic_score_gemma":0.0000054966313,"teacher_disagreement_score":0.6600845,"about_ca_system_score_codex":0.000023656883,"about_ca_system_score_gemma":0.0000012448538,"threshold_uncertainty_score":0.9990218},"labels":[],"label_agreement":null},{"id":"W1983918144","doi":"10.1128/aem.71.11.7613-7617.2005","title":"Bacteriocin (Mutacin) Production by <i>Streptococcus mutans</i> Genome Sequence Reference Strain UA159: Elucidation of the Antimicrobial Repertoire by Genetic Dissection","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Health Research Council of New Zealand; Otago Medical Research Foundation; University of Toronto; University of Otago","keywords":"Bacteriocin; Streptococcus mutans; Biology; Strain (injury); Whole genome sequencing; Genetics; Repertoire; Antimicrobial; Microbiology; Genome; Computational biology; Sequence (biology); Gene; Bacteria; Anatomy","score_opus":0.005325087641576195,"score_gpt":0.1869164067004393,"score_spread":0.1815913190588631,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1983918144","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985008,0.00010465251,0.000088535875,0.00020644652,0.00010433331,0.0003312752,0.0006084299,0.000009582615,0.000045916942],"genre_scores_gemma":[0.9961206,0.00019371016,0.0001309557,0.00016881817,0.00007893091,0.000021195034,0.0029160697,0.000013347565,0.00035640254],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99897885,0.00006134454,0.0002838347,0.00047481863,0.000032783428,0.00016834815],"domain_scores_gemma":[0.9995066,0.0000049134574,0.00016022043,0.00028506533,0.0000089040195,0.000034312387],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000094023715,0.00015057005,0.0001252484,0.000013433931,0.00013656958,0.00001566836,0.00012957417,0.00016140967,0.000043028365],"category_scores_gemma":[0.000011726823,0.00013085891,0.00003141654,0.000046803456,0.0002886791,0.000008737454,0.00008757815,0.000089742796,0.000006214401],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022511265,0.00006848852,0.0016886597,0.000010864593,0.000012382906,5.129086e-8,0.000055344437,0.00001399657,0.99248207,0.0000023373,0.0004176769,0.0052256417],"study_design_scores_gemma":[0.00021315043,0.00005346881,0.012810464,0.0000051547618,0.000013513717,0.0000361948,0.0000711876,0.000003973509,0.9673688,0.0000034192465,0.019271186,0.00014949369],"about_ca_topic_score_codex":0.000011713269,"about_ca_topic_score_gemma":0.000021733476,"teacher_disagreement_score":0.025113251,"about_ca_system_score_codex":0.000038463426,"about_ca_system_score_gemma":0.0000146518205,"threshold_uncertainty_score":0.53362715},"labels":[],"label_agreement":null},{"id":"W1983955064","doi":"10.1128/aem.72.5.3780-3784.2006","title":"Development and Validation of an Oligonucleotide Microarray for Detection of Multiple Virulence and Antimicrobial Resistance Genes in <i>Escherichia coli</i>","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de Santé Publique du Québec; Biotechnology Research Institute; Université de Montréal","funders":"","keywords":"Biology; Escherichia coli; Virulence; Microarray; DNA microarray; Gene; Microbiology; Oligonucleotide; Genetics; Antibiotic resistance; Genome; Antimicrobial; Computational biology; Bacteria; Gene expression","score_opus":0.004882065187043694,"score_gpt":0.1818699842283308,"score_spread":0.1769879190412871,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1983955064","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99915886,0.000088560024,0.0002758903,0.000011810131,0.000030429881,0.00029727464,0.0000838342,0.000005341866,0.000047986206],"genre_scores_gemma":[0.9892691,0.00008610374,0.010445898,0.000042733252,0.000009354494,0.000020040921,0.00008474356,0.000010806768,0.000031255033],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999227,0.000019724543,0.00028289162,0.00029669298,0.000018609728,0.00015507892],"domain_scores_gemma":[0.9997366,0.000030160796,0.00012643547,0.000077971716,0.000001388643,0.000027429705],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000089830115,0.0001267482,0.00018035159,0.00003267644,0.00008519763,0.0000074120107,0.00005036026,0.00008377699,0.000014211264],"category_scores_gemma":[0.0000013979078,0.00013102152,0.00001544627,0.000039371847,0.00035482217,0.0000887324,0.000078899764,0.000050164497,0.0000015673394],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000102792874,0.00010218672,0.0030866517,0.00003065302,0.0000053410804,2.440151e-7,0.00020080913,0.00002949354,0.99327075,0.000007415747,0.000007226845,0.0031564478],"study_design_scores_gemma":[0.0005946584,0.00003655865,0.08776216,0.000010485602,0.000009464942,0.000009376873,0.00011869906,0.000014438528,0.9082593,0.000019415687,0.0030451417,0.00012033166],"about_ca_topic_score_codex":0.00023935293,"about_ca_topic_score_gemma":0.0008043348,"teacher_disagreement_score":0.08501147,"about_ca_system_score_codex":0.0000417049,"about_ca_system_score_gemma":0.0000029913763,"threshold_uncertainty_score":0.53429025},"labels":[],"label_agreement":null},{"id":"W1984212897","doi":"10.1128/aem.00670-14","title":"Gene Discovery for Enzymes Involved in Limonene Modification or Utilization by the Mountain Pine Beetle-Associated Pathogen Grosmannia clavigera","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Forest Insect Ecology and Management","field":"Environmental Science","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Monoterpene; Dendroctonus; Limonene; Biology; Metabolic pathway; Mountain pine beetle; Monooxygenase; Biochemistry; Botany; Chemistry; Gene; Cytochrome P450; Enzyme; Bark beetle; Essential oil; Ecology; Curculionidae","score_opus":0.0118605700899453,"score_gpt":0.20589842491123725,"score_spread":0.19403785482129196,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984212897","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968119,0.0001144566,0.0018219217,0.00019394439,0.000055763107,0.00071882264,0.00013657848,0.000018000303,0.00012855935],"genre_scores_gemma":[0.99593896,0.00022110186,0.0001745827,0.0010626657,0.000017310129,0.00027721506,0.0017827374,0.000016842272,0.0005085881],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989559,0.000076617616,0.00023534447,0.0003947127,0.00003988385,0.0002975158],"domain_scores_gemma":[0.99959207,0.00009345911,0.000104884544,0.00017646991,7.066882e-7,0.000032414486],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003093226,0.00017164189,0.00017398513,0.000031213833,0.00019334456,0.000017180535,0.00016602343,0.00015679919,0.00010896807],"category_scores_gemma":[0.000009207662,0.0001252911,0.00002756676,0.0000917651,0.00034934602,0.00008578134,0.0001721125,0.00008840926,0.000039123235],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012129234,0.00022856465,0.011889827,0.0000056194153,0.000018752558,4.5450804e-7,0.0001932452,0.000331233,0.98181415,0.0009015249,0.0017136083,0.0027817143],"study_design_scores_gemma":[0.008618888,0.0013889334,0.7126249,0.000019521109,0.00017361053,0.00002977319,0.0015590616,0.005795345,0.18176529,0.01045204,0.07607933,0.0014933061],"about_ca_topic_score_codex":0.00008031116,"about_ca_topic_score_gemma":0.00040042526,"teacher_disagreement_score":0.8000489,"about_ca_system_score_codex":0.00016676872,"about_ca_system_score_gemma":0.0000026777434,"threshold_uncertainty_score":0.51092225},"labels":[],"label_agreement":null},{"id":"W1984409531","doi":"10.1128/aem.70.4.2296-2306.2004","title":"Direct Quantification of <i>Campylobacter jejuni</i> and <i>Campylobacter lanienae</i> in Feces of Cattle by Real-Time Quantitative PCR","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":99,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Fastidious organism; Biology; Campylobacter; Campylobacter jejuni; Feces; Microbiology; SYBR Green I; Real-time polymerase chain reaction; 16S ribosomal RNA; Primer (cosmetics); Polymerase chain reaction; Bacteria; Gene; Genetics; Chemistry","score_opus":0.0077282716707576865,"score_gpt":0.18911758748939533,"score_spread":0.18138931581863765,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984409531","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998103,0.00044038266,0.0000029154953,0.00017295756,0.000028023582,0.00019967687,0.00040326823,0.000011962612,0.0006377747],"genre_scores_gemma":[0.9977201,0.001321538,0.00013949974,0.00013909453,0.000013589938,0.0000125401875,0.00062022684,0.0000023279492,0.000031073552],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99884796,0.00008879407,0.00037992225,0.0003949332,0.0000357946,0.00025261194],"domain_scores_gemma":[0.99942636,0.00024222911,0.00020018608,0.00007214557,0.000004706887,0.0000543611],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020486751,0.00018284968,0.00042938968,0.000020148058,0.000046038553,0.00000540378,0.00011734833,0.00018111726,0.000077052435],"category_scores_gemma":[0.000007299601,0.00009305247,0.00004195834,0.000092063696,0.0005012503,0.000048400492,0.000087098946,0.0000798936,0.000016171949],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007370307,0.00017381426,0.036356837,0.000009781463,0.000016929827,4.1687787e-7,0.00016008351,0.0000047302638,0.9615913,0.00030961673,0.000075486125,0.001227278],"study_design_scores_gemma":[0.001035472,0.0006760094,0.5422319,0.000032523,0.000034045475,0.000031539857,0.0009516395,0.0000021986405,0.45112675,0.00079197873,0.0026938778,0.00039205293],"about_ca_topic_score_codex":0.0006677053,"about_ca_topic_score_gemma":0.00013326647,"teacher_disagreement_score":0.51046455,"about_ca_system_score_codex":0.000024150379,"about_ca_system_score_gemma":0.0000035715877,"threshold_uncertainty_score":0.37945697},"labels":[],"label_agreement":null},{"id":"W1984545633","doi":"10.1128/aem.03691-14","title":"Genetic Determinants of Reutericyclin Biosynthesis in Lactobacillus reuteri","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Lactobacillus reuteri; Biology; Nonribosomal peptide; Polyketide synthase; Acyl carrier protein; Gene; Genetics; Polyketide; Microbiology; Biochemistry; Biosynthesis; Lactobacillus; Bacteria","score_opus":0.014273931746470764,"score_gpt":0.18354514835787378,"score_spread":0.169271216611403,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984545633","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992971,0.00019008979,8.405222e-7,0.000053516942,0.000037331363,0.000111483576,0.0000946687,0.000006578949,0.00020839313],"genre_scores_gemma":[0.999432,0.00017332245,0.00020647593,0.00010544875,0.000021362785,0.000005698715,0.000037812508,9.83499e-7,0.000016862996],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993363,0.000026311947,0.0002062448,0.00021920489,0.000024567822,0.00018734319],"domain_scores_gemma":[0.99979895,0.000028128754,0.000064594526,0.000047085457,0.0000013433518,0.000059899812],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008417695,0.00010639117,0.00018796608,0.000012539571,0.000022851378,0.0000048628863,0.00011012519,0.00011234255,0.000040110397],"category_scores_gemma":[0.000002605527,0.000048473226,0.000022651438,0.00005198604,0.00014895471,0.000015804855,0.00012704612,0.00005186213,0.000014344611],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029846937,0.000072908704,0.043296646,0.0000025193372,0.0000037541076,0.0000030275553,0.000049398954,8.496429e-7,0.9129287,0.0000085063675,0.0000149874095,0.043588858],"study_design_scores_gemma":[0.0007407637,0.00061742985,0.82967895,0.000018066705,0.000015724152,0.00008455806,0.0007978104,0.000033079683,0.15797246,0.0004903328,0.009178274,0.00037257353],"about_ca_topic_score_codex":0.00006458655,"about_ca_topic_score_gemma":0.000092940434,"teacher_disagreement_score":0.78638226,"about_ca_system_score_codex":0.000021298009,"about_ca_system_score_gemma":0.000002077053,"threshold_uncertainty_score":0.19766809},"labels":[],"label_agreement":null},{"id":"W1984907304","doi":"10.1128/aem.03250-12","title":"Phytophthora infestans Cholinephosphotransferase with Substrate Specificity for Very-Long-Chain Polyunsaturated Fatty Acids","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Lipid metabolism and biosynthesis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saskatchewan Research Council (Canada); University of Saskatchewan","funders":"","keywords":"Biochemistry; Biology; Biosynthesis; Polyunsaturated fatty acid; Phytophthora infestans; Diacylglycerol kinase; Arachidonic acid; Docosahexaenoic acid; Amino acid; Fatty acid; Gene; Enzyme","score_opus":0.005649642691309756,"score_gpt":0.18634194840371973,"score_spread":0.18069230571240996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984907304","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9880814,0.010068889,0.0010397396,0.0000116977535,0.000083616826,0.00037309856,0.00025909216,0.000013324474,0.00006913843],"genre_scores_gemma":[0.99341416,0.0041259225,0.0008917584,0.00016844874,0.00025231016,0.00005493826,0.0010126567,0.000030483274,0.00004930029],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99894595,0.000027091512,0.00018727618,0.0003688352,0.000027607004,0.00044322267],"domain_scores_gemma":[0.99959904,0.000016323187,0.000053452095,0.0002046104,0.0000034730172,0.0001231259],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010824321,0.00027036527,0.0002656114,0.000026259766,0.00012632625,0.000013001603,0.00009957547,0.00022946912,0.000025553369],"category_scores_gemma":[0.0000018351315,0.00020659193,0.000060800834,0.000038693805,0.00026068545,0.0000072531766,0.00004652148,0.00008426394,0.000011874345],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031232284,0.00015712819,0.0067152777,0.000026054398,0.00007175722,7.082277e-7,0.000048676106,0.0000013342238,0.98560745,0.000051458355,0.000015099496,0.006992748],"study_design_scores_gemma":[0.00088144315,0.00012457772,0.01953454,0.0000061032406,0.00006627026,0.00007591249,0.00011808731,6.217646e-7,0.8966835,0.0000027847223,0.0821797,0.00032646107],"about_ca_topic_score_codex":0.0000028616055,"about_ca_topic_score_gemma":0.0000052426253,"teacher_disagreement_score":0.08892394,"about_ca_system_score_codex":0.0000127838475,"about_ca_system_score_gemma":0.000013501453,"threshold_uncertainty_score":0.8424574},"labels":[],"label_agreement":null},{"id":"W1985579432","doi":"10.1128/aem.00720-14","title":"Comparative Genomic and Morphological Analyses of Listeria Phages Isolated from Farm Environments","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Cornell University Agricultural Experiment Station; National Institute of Food and Agriculture","keywords":"Listeria; Biology; Genome; Lytic cycle; Listeria monocytogenes; Bacteriophage; Enterococcus faecalis; Microbiology; Genetics; Bacteria; Gene; Virus; Staphylococcus aureus; Escherichia coli","score_opus":0.017768546558328668,"score_gpt":0.24548654105109688,"score_spread":0.22771799449276822,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1985579432","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99854326,0.00016766704,0.00032602448,0.000020470992,0.0000469354,0.00014853408,0.00016396154,0.000009994989,0.0005731433],"genre_scores_gemma":[0.998442,0.00023105631,0.00067742623,0.00026190275,0.000019411116,0.0000096856265,0.0002597386,0.000010808407,0.00008799152],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990089,0.000060786693,0.00025585276,0.00043805141,0.000027753913,0.00020866511],"domain_scores_gemma":[0.999572,0.00006141781,0.00013030424,0.00016073739,2.8663607e-7,0.00007527784],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000050821192,0.00020803697,0.00034903458,0.000023382872,0.00012233421,0.00002014471,0.00011345029,0.00012582171,0.0021003261],"category_scores_gemma":[0.0000010864637,0.00017842028,0.000039987743,0.000027372891,0.000991323,0.000052728312,0.0003678141,0.00011722859,0.00013199775],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000050320377,0.00010083948,0.00296822,0.0000016105946,0.00004678716,0.0000012880936,0.00027800916,0.000020673688,0.9937738,0.000005653326,0.000041188086,0.0027115932],"study_design_scores_gemma":[0.0010465346,0.0002664489,0.60155594,0.000007878223,0.0001013324,0.000073100266,0.0003409229,0.00016264804,0.38104674,0.00012214396,0.014920052,0.00035627699],"about_ca_topic_score_codex":0.00033091675,"about_ca_topic_score_gemma":0.000029860943,"teacher_disagreement_score":0.6127271,"about_ca_system_score_codex":0.0000443855,"about_ca_system_score_gemma":9.611679e-7,"threshold_uncertainty_score":0.9988119},"labels":[],"label_agreement":null},{"id":"W1985614254","doi":"10.1128/aem.00490-09","title":"Extracellular Iron Biomineralization by Photoautotrophic Iron-Oxidizing Bacteria","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Iron oxide chemistry and applications","field":"Energy","cited_by":172,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Canadian Light Source (Canada)","funders":"","keywords":"Biomineralization; Oxidizing agent; Goethite; Iron bacteria; Magnetotactic bacteria; Magnetite; Chemistry; Bacteria; Redox; Chemical engineering; Inorganic chemistry; Materials science; Biology; Metallurgy; Organic chemistry","score_opus":0.003662072393957391,"score_gpt":0.17120316430137375,"score_spread":0.16754109190741637,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1985614254","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973119,0.000674818,0.00022945162,0.00021858483,0.000032107328,0.00014378206,0.00006805651,0.000060021142,0.0012613098],"genre_scores_gemma":[0.9954075,0.00022768899,0.0006840605,0.00037022648,0.000066924,0.0000265826,0.002134366,0.000019055216,0.0010635892],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990386,0.00001744588,0.00022646044,0.00040121586,0.00002864677,0.00028765766],"domain_scores_gemma":[0.9996195,0.0000143646575,0.00008170409,0.00020933406,0.0000011701383,0.00007396683],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004224793,0.00021425271,0.00017578376,0.000023327397,0.00014862491,0.000018577342,0.000113327485,0.0001994388,0.00046029425],"category_scores_gemma":[0.0000010500158,0.00021601777,0.000034626726,0.00004330403,0.0001597923,0.000041622196,0.00004120723,0.00010549801,0.00010428476],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016430084,0.00010322139,0.000031066706,0.0000071462487,0.0000055076794,0.0000011499477,0.000051155366,0.000039390507,0.9935662,0.0031331903,0.00060000457,0.002445548],"study_design_scores_gemma":[0.00058467954,0.000045077577,0.00072649785,0.000003564519,0.000021259913,0.00004286292,0.00007567677,0.000027437009,0.89354646,0.00039730925,0.10423055,0.00029862422],"about_ca_topic_score_codex":0.000017546974,"about_ca_topic_score_gemma":9.86687e-7,"teacher_disagreement_score":0.10363054,"about_ca_system_score_codex":0.000054110846,"about_ca_system_score_gemma":0.000003110831,"threshold_uncertainty_score":0.8808949},"labels":[],"label_agreement":null},{"id":"W1985895277","doi":"10.1128/aem.00416-15","title":"Comparison of the Prevalences and Diversities of Listeria Species and Listeria monocytogenes in an Urban and a Rural Agricultural Watershed","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Regina; Dalhousie University","funders":"","keywords":"Listeria monocytogenes; Listeria; Biology; Veterinary medicine; Population; Microbiology; Bacteria; Medicine; Environmental health","score_opus":0.04495165675627414,"score_gpt":0.26326428567344623,"score_spread":0.2183126289171721,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1985895277","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99770105,0.0018756463,9.957863e-7,0.00002812431,0.000048300353,0.00015993172,0.00012400762,0.0000016796994,0.00006027002],"genre_scores_gemma":[0.99939454,0.00027035372,0.000106874606,0.000028399267,0.000024021856,0.000005105181,0.00012775455,0.0000051354305,0.00003784323],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99941045,0.000054984055,0.00018295909,0.00021047263,0.000024483252,0.000116673604],"domain_scores_gemma":[0.99973756,0.0000072568773,0.00009245183,0.00011706973,0.0000034607629,0.000042175456],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006342486,0.00013155538,0.00021803631,0.000015636968,0.000040785326,0.0000100775405,0.0000916106,0.000104333616,0.0000023813593],"category_scores_gemma":[0.0000018496954,0.00008946277,0.000015150318,0.000014228664,0.00081465626,0.000008165332,0.00054812455,0.000032645843,6.652832e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013377923,0.00002357623,0.23056738,0.000024409761,0.000015469614,1.071482e-7,0.0013375382,0.000002477332,0.767686,0.000019682611,0.00001600678,0.00017356085],"study_design_scores_gemma":[0.0008072584,0.00039427765,0.43554646,0.0000100303905,0.000026740086,0.00003085965,0.0101275025,0.000004506747,0.5524479,0.000021050426,0.00044032923,0.00014305761],"about_ca_topic_score_codex":0.000023933275,"about_ca_topic_score_gemma":0.000035284414,"teacher_disagreement_score":0.21523806,"about_ca_system_score_codex":0.000008997327,"about_ca_system_score_gemma":0.0000037415862,"threshold_uncertainty_score":0.36481857},"labels":[],"label_agreement":null},{"id":"W1986463939","doi":"10.1128/aem.01657-07","title":"Epidemiology, Relative Invasive Ability, Molecular Characterization, and Competitive Performance of <i>Campylobacter jejuni</i> Strains in the Chicken Gut","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada; Institute for Biological Sciences","funders":"","keywords":"Biology; Campylobacter jejuni; Microbiology; Flagellin; Virulence; Population; Pathogen; Typing; Campylobacter; Strain (injury); Genome; Bacteria; Gene; Genetics","score_opus":0.010507902157889683,"score_gpt":0.1977593864200724,"score_spread":0.18725148426218272,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1986463939","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982726,0.00017789874,0.000018117722,0.00053524453,0.000028418119,0.00032338322,0.0001364152,0.0000072288967,0.0005007108],"genre_scores_gemma":[0.9967761,0.00046878142,0.00009199997,0.0019561874,0.000029235776,0.000013079832,0.0006536706,0.0000014448966,0.000009485063],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99862427,0.0002447927,0.0004084224,0.00036763295,0.000028424838,0.00032647396],"domain_scores_gemma":[0.998801,0.00089471554,0.00017665219,0.00007320494,0.00000471592,0.000049689846],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00091716927,0.00017805272,0.00034892544,0.000017346514,0.0000872999,0.0000028531244,0.00015808355,0.00020303363,0.000057699974],"category_scores_gemma":[0.000030291305,0.000075994154,0.00003948058,0.0000859634,0.0008483764,0.00005091254,0.00012665572,0.00019630956,0.000005883395],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000032073334,0.00005728199,0.29853135,0.000005006448,0.000011285206,0.0000013670159,0.00023414717,4.2607545e-7,0.69627637,0.0025500034,0.0000024241128,0.0022982552],"study_design_scores_gemma":[0.00021953556,0.00026644816,0.98984784,0.0000087477,0.000011316302,0.000058377274,0.0009630468,0.0000017804628,0.00666756,0.0008259969,0.000993049,0.0001362808],"about_ca_topic_score_codex":0.00003654309,"about_ca_topic_score_gemma":0.000091586306,"teacher_disagreement_score":0.6913165,"about_ca_system_score_codex":0.000020131474,"about_ca_system_score_gemma":0.0000030129968,"threshold_uncertainty_score":0.31258783},"labels":[],"label_agreement":null},{"id":"W1988022860","doi":"10.1128/aem.04208-14","title":"High-Throughput Microfluidic Method To Study Biofilm Formation and Host-Pathogen Interactions in Pathogenic Escherichia coli","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Biofilm; Escherichia coli; Pathogenic Escherichia coli; Pathogen; Microbiology; Host (biology); Biology; Microfluidics; Mutant; Strain (injury); Chemistry; Biophysics; Bacteria; Nanotechnology; Materials science; Biochemistry; Genetics; Gene","score_opus":0.014459611671902902,"score_gpt":0.2656824208208014,"score_spread":0.2512228091488985,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1988022860","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963349,0.0013409327,0.0012784903,0.00013413012,0.000052556235,0.0006821736,0.000100311925,0.000007982928,0.000068536145],"genre_scores_gemma":[0.99290097,0.0004393538,0.0057176906,0.00043569575,0.00004808916,0.00018370865,0.00020256695,0.000018536084,0.000053394222],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988516,0.0001536094,0.00022120512,0.00044560432,0.000041694435,0.00028627025],"domain_scores_gemma":[0.9996202,0.000020760872,0.000049645863,0.00018131627,0.0000069661337,0.00012111368],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000314837,0.00019250823,0.00021904665,0.00006448399,0.0000889987,0.000015770573,0.00010045753,0.00008720611,0.000008020509],"category_scores_gemma":[0.0000152119665,0.00018267741,0.00002218082,0.00007985023,0.00011387209,0.000007823609,0.00052226154,0.0001255616,0.000018026458],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012578009,0.00019216357,0.005777503,0.0000053468902,0.000048805854,0.000003415821,0.0006614176,0.00000332509,0.9910584,0.000014208268,0.00034877332,0.0017608248],"study_design_scores_gemma":[0.0042878496,0.0016724714,0.07570676,0.0000086698765,0.00006193871,0.00011168312,0.011066926,0.000020749172,0.86297417,0.00008245944,0.04335132,0.0006549898],"about_ca_topic_score_codex":0.0000681226,"about_ca_topic_score_gemma":0.00005857009,"teacher_disagreement_score":0.12808424,"about_ca_system_score_codex":0.000052527863,"about_ca_system_score_gemma":0.000016367396,"threshold_uncertainty_score":0.7449368},"labels":[],"label_agreement":null},{"id":"W1988617659","doi":"10.1128/aem.00982-06","title":"Identification of <i>Escherichia coli</i> O157:H7 Genomic Regions Conserved in Strains with a Genotype Associated with Human Infection","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"Health Canada; Public Health Agency; Public Health Agency of Canada","keywords":"Biology; Lineage (genetic); Genetics; Virulence; Genotype; Escherichia coli; Phylogenetics; Gene; Conserved sequence; Plasmid; Peptide sequence","score_opus":0.005483428526610632,"score_gpt":0.19718310391245195,"score_spread":0.19169967538584132,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1988617659","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990071,0.00015784349,0.00008959888,0.00002583596,0.0000085239535,0.00031015763,0.000056730692,0.0000066990037,0.00033749818],"genre_scores_gemma":[0.9989513,0.00010781694,0.000055604916,0.000053530057,0.000020990534,0.000058001777,0.0006168129,0.000016683949,0.00011926706],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992276,0.00005185968,0.00019591989,0.00029012677,0.000033447053,0.00020104583],"domain_scores_gemma":[0.99969494,0.00000999694,0.00012556677,0.00013832562,0.0000073162787,0.000023848763],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010579793,0.0001364298,0.00016689408,0.00003707482,0.00008859138,0.0000066292123,0.000059523903,0.00011810944,0.000003991445],"category_scores_gemma":[0.000003276254,0.0001182773,0.00001899243,0.000069319685,0.0004669976,0.0000028634727,0.0000666781,0.000092469025,0.0000013630812],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009457309,0.00016371884,0.048635773,0.000009205759,0.00006410489,0.0000011620233,0.00003327261,0.00007386922,0.9507227,0.00013398564,0.00004886034,0.000018757104],"study_design_scores_gemma":[0.0015346213,0.00045685173,0.7044116,0.0000094007955,0.000029561665,0.00000916887,0.000117832446,0.0000061866085,0.29257378,0.00007825849,0.0005737439,0.00019898791],"about_ca_topic_score_codex":0.00017102096,"about_ca_topic_score_gemma":0.0016577764,"teacher_disagreement_score":0.65814894,"about_ca_system_score_codex":0.00004081358,"about_ca_system_score_gemma":0.000022022183,"threshold_uncertainty_score":0.48232082},"labels":[],"label_agreement":null},{"id":"W1988709783","doi":"10.1128/aem.69.6.3231-3237.2003","title":"<i>Escherichia coli</i> Heat Shock Protein DnaK: Production and Consequences in Terms of Monitoring Cooking","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Heat shock proteins research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique; Agriculture and Agri-Food Canada","funders":"Natural Resources Canada","keywords":"Escherichia coli; Heat shock protein; Intracellular; Hsp70; Heat shock; Biology; Protein biosynthesis; Cell; Molecular biology; Extracellular; Biochemistry","score_opus":0.007569936815127254,"score_gpt":0.21574849420662653,"score_spread":0.2081785573914993,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1988709783","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985044,0.0005390426,0.000021954396,0.00003814587,0.000027851696,0.00045935359,0.000010385519,0.0000030250606,0.00039583162],"genre_scores_gemma":[0.99894434,0.0003480621,0.0004741277,0.000023984723,0.000028286755,0.00007340527,0.000024486866,0.000011261369,0.000072063165],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99918246,0.00006656825,0.00016612942,0.00033752332,0.000030469895,0.00021685733],"domain_scores_gemma":[0.9997998,0.000005968951,0.000027025255,0.0001239031,0.0000018498483,0.000041467854],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016118737,0.00011883766,0.00014653278,0.00003320936,0.000052959567,0.0000055606483,0.00004817458,0.00013646857,0.000007717697],"category_scores_gemma":[0.00001581994,0.00011352525,0.000013839599,0.000036072608,0.00043487348,0.0000032859257,0.00007463003,0.00010192663,0.0000013976278],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040830848,0.000041675372,0.029706197,0.000024698367,0.000011568215,0.0000013013546,0.000043204775,0.0000090536905,0.9696341,0.000051363095,0.0000051166166,0.00043086155],"study_design_scores_gemma":[0.00030503699,0.00012755214,0.0032998978,0.000017377763,0.0000028739473,0.000035904075,0.0001636287,7.594733e-7,0.9943405,0.00006524694,0.0015271655,0.00011408811],"about_ca_topic_score_codex":0.000019935776,"about_ca_topic_score_gemma":0.000008487265,"teacher_disagreement_score":0.0264063,"about_ca_system_score_codex":0.00001988207,"about_ca_system_score_gemma":0.000013216895,"threshold_uncertainty_score":0.46294254},"labels":[],"label_agreement":null},{"id":"W1989097861","doi":"10.1128/aem.00172-11","title":"Identification of Nitrogen-Incorporating Bacteria in Petroleum-Contaminated Arctic Soils by Using [ <sup>15</sup> N]DNA-Based Stable Isotope Probing and Pyrosequencing","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":127,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University; National Research Council Canada; Biotechnology Research Institute","funders":"Natural Resources Canada","keywords":"Stable-isotope probing; AlkB; Actinobacteria; Bioremediation; Environmental chemistry; Pyrosequencing; Proteobacteria; Soil water; Soil microbiology; Soil contamination; Microorganism; Biology; Chemistry; Bacteria; Contamination; 16S ribosomal RNA; Ecology; DNA; Biochemistry; Gene; DNA repair; Genetics","score_opus":0.008934903968721136,"score_gpt":0.1749514861597026,"score_spread":0.16601658219098148,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989097861","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99928087,0.000055753582,0.00012567415,0.000010007468,0.000021821916,0.00033153314,0.00009962033,0.000013069905,0.00006165255],"genre_scores_gemma":[0.9989015,0.000023245202,0.0007416134,0.00012509346,0.0000057582233,0.000009735506,0.00016011421,0.000017655791,0.000015308873],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99864644,0.00006738005,0.00047826933,0.0004523528,0.000053882213,0.00030168807],"domain_scores_gemma":[0.99949193,0.000022753384,0.0002793272,0.00014322404,0.0000018723349,0.000060898987],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002909751,0.00020669123,0.00025299238,0.00005954902,0.00009984097,0.000016456515,0.000111274894,0.00014329159,0.00038121353],"category_scores_gemma":[0.000005222443,0.00020312161,0.000024566603,0.00009204423,0.00044373138,0.00012419683,0.00013605377,0.000115124145,0.000024576286],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038510072,0.00008553265,0.10085914,0.000020551242,0.000007879186,0.0000014621866,0.00043660743,0.00012595946,0.8980308,0.000004578375,0.000008049942,0.00038091672],"study_design_scores_gemma":[0.00097149424,0.00006997794,0.021951674,0.00002307703,0.000022084401,0.000019539419,0.0006228333,0.002438492,0.9734856,0.00007060144,0.000045970737,0.00027868326],"about_ca_topic_score_codex":0.00032624276,"about_ca_topic_score_gemma":0.00004746433,"teacher_disagreement_score":0.078907475,"about_ca_system_score_codex":0.00019152493,"about_ca_system_score_gemma":0.000009602616,"threshold_uncertainty_score":0.8283059},"labels":[],"label_agreement":null},{"id":"W1989277372","doi":"10.1128/aem.00384-12","title":"Discovery of a <i>trans</i> -Dichloroethene-Respiring Dehalogenimonas Species in the 1,1,2,2-Tetrachloroethane-Dechlorinating WBC-2 Consortium","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Dehalococcoides; Enrichment culture; Biology; Reductive dechlorination; 16S ribosomal RNA; Microbiology; Library; Thermus; Vinyl chloride; Phylotype; Ribosomal RNA; Bacteria; Chemistry; Gene; Thermophile; Biochemistry; Genetics; Ecology; Organic chemistry; Biodegradation","score_opus":0.010353829339867887,"score_gpt":0.1931877493712734,"score_spread":0.1828339200314055,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989277372","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99673027,0.0002361485,0.00004154005,0.000108255175,0.00010349424,0.00028411453,0.000087286,0.0000103957045,0.0023984837],"genre_scores_gemma":[0.99881166,0.00019976159,0.00016659866,0.00060517824,0.00004869712,0.000013022304,0.00005942723,0.00001283788,0.00008282574],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99873006,0.000076961354,0.0003660358,0.0002806293,0.000096407726,0.00044992732],"domain_scores_gemma":[0.9994972,0.00013363523,0.00013123707,0.00018664123,6.816236e-7,0.000050602914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004561456,0.00020725229,0.00023586386,0.000038043494,0.000086137596,0.000013788758,0.00023416815,0.00012785588,0.0003486218],"category_scores_gemma":[0.0000082696815,0.00015027076,0.000054858818,0.00011098803,0.0007671867,0.00015753582,0.00018251906,0.00018690557,0.000061989864],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028697541,0.00013666188,0.1441444,0.00000731326,0.000007741681,0.0000013099293,0.0013683741,0.0000062151157,0.8533041,0.00011931411,0.00006902798,0.0008068569],"study_design_scores_gemma":[0.0008404923,0.00007169289,0.3235502,0.000009181846,0.000026366599,0.00007614664,0.0025265785,0.000003609563,0.66185284,0.00007703988,0.010641422,0.00032440372],"about_ca_topic_score_codex":0.000069702335,"about_ca_topic_score_gemma":0.000060532537,"teacher_disagreement_score":0.19145124,"about_ca_system_score_codex":0.00006826199,"about_ca_system_score_gemma":0.0000032634898,"threshold_uncertainty_score":0.61278635},"labels":[],"label_agreement":null},{"id":"W1990003259","doi":"10.1128/aem.00947-06","title":"Transcriptomic Assessment of Isozymes in the Biphenyl Pathway of <i>Rhodococcus</i> sp. Strain RHA1","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Transcriptome; Gene; Isozyme; Microarray; Gene expression; Biology; DNA microarray; Microarray analysis techniques; Chemistry; Biochemistry; Enzyme","score_opus":0.004100941636286531,"score_gpt":0.18326953276922803,"score_spread":0.1791685911329415,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990003259","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954223,0.00006567942,0.00003760548,0.00010596566,0.000034782253,0.00030315446,0.0003917565,0.0000049611494,0.003633778],"genre_scores_gemma":[0.99897474,0.00007107883,0.00043172648,0.00027891534,0.000011711328,0.000006941499,0.00018358158,0.0000073454903,0.000033963337],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990094,0.00006982603,0.00037290034,0.00025840814,0.000072710376,0.00021679887],"domain_scores_gemma":[0.9996441,0.000044183864,0.00013404815,0.00015472193,5.647193e-7,0.000022399327],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002659182,0.00015241193,0.00022785628,0.000030380887,0.0000359529,0.0000045455977,0.00019381147,0.000104326034,0.0007201253],"category_scores_gemma":[7.996157e-7,0.000108319706,0.000048984115,0.000085027146,0.000574347,0.00003203094,0.00006689912,0.00010547514,0.00001777896],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001156763,0.00020021627,0.055951983,0.0000075796715,0.00000483222,9.1667823e-7,0.00018069586,0.000034295612,0.9419395,0.0003003466,0.00024984957,0.0011182468],"study_design_scores_gemma":[0.0012578499,0.00013074963,0.62004185,0.0000070209967,0.000017025135,0.000017951174,0.00077288755,0.000020834295,0.36765772,0.0003455314,0.009491939,0.00023864166],"about_ca_topic_score_codex":0.00017521545,"about_ca_topic_score_gemma":0.00019211763,"teacher_disagreement_score":0.57428175,"about_ca_system_score_codex":0.000045647022,"about_ca_system_score_gemma":0.000006097819,"threshold_uncertainty_score":0.78848666},"labels":[],"label_agreement":null},{"id":"W1990137469","doi":"10.1128/aem.71.12.8548-8557.2005","title":"Waterborne Pathogen Detection by Use of Oligonucleotide-Based Microarrays","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":110,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier de l’Université de Montréal; Institut National de la Recherche Scientifique; Université du Québec à Rimouski; Université de Montréal; Biotechnology Research Institute","funders":"Water Research Foundation; Water Environment Research Foundation; U.S. Environmental Protection Agency","keywords":"DNA microarray; Oligonucleotide; Computational biology; Pathogen; Biology; Microarray; Genetics; DNA; Gene; Gene expression","score_opus":0.004321206477531152,"score_gpt":0.159469955811784,"score_spread":0.15514874933425285,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990137469","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99846596,0.000045289216,0.0005895364,0.00010432809,0.00005185556,0.0001796983,0.00029774173,0.000020710708,0.0002448717],"genre_scores_gemma":[0.99720097,0.00005752494,0.0016117267,0.000632903,0.000021749624,0.000014000729,0.00024240062,0.000019394238,0.00019935064],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991235,0.000026156618,0.00023896886,0.00033301988,0.000027389566,0.00025095113],"domain_scores_gemma":[0.99964625,0.00002558494,0.000094087016,0.00016633037,7.624081e-7,0.00006700714],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000049441347,0.00017409601,0.00017444162,0.00002569688,0.00009804637,0.000013837136,0.00008906254,0.00011965342,0.001517566],"category_scores_gemma":[0.0000012423878,0.00016121408,0.000051607964,0.00003882233,0.00037430428,0.00011216296,0.00012379355,0.00010850322,0.00030657082],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034411725,0.0001321824,0.0006873196,0.0000030333947,0.000011354683,4.8118403e-7,0.00006188877,0.000104733095,0.9778827,0.0000019520871,0.0006390562,0.020440895],"study_design_scores_gemma":[0.0003615384,0.00006268382,0.00818905,0.0000023634739,0.000018552784,0.000029761311,0.000029756913,0.000047114336,0.8283858,0.0000037828438,0.16270548,0.00016413977],"about_ca_topic_score_codex":0.00015546722,"about_ca_topic_score_gemma":0.000059342223,"teacher_disagreement_score":0.16206643,"about_ca_system_score_codex":0.00009724221,"about_ca_system_score_gemma":0.000001443514,"threshold_uncertainty_score":0.9993952},"labels":[],"label_agreement":null},{"id":"W1990330334","doi":"10.1128/aem.00832-13","title":"Identification of a New P335 Subgroup through Molecular Analysis of Lactococcal Phages Q33 and BM13","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Biology; Genome; Bacteriophage; Genetics; Microbiology; Gene; Escherichia coli","score_opus":0.004002555696777569,"score_gpt":0.19822052059520498,"score_spread":0.1942179648984274,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990330334","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983877,0.00011820792,0.0007656698,0.00006841352,0.000023246148,0.00024538196,0.00006505695,0.0000060018665,0.00032032523],"genre_scores_gemma":[0.99893945,0.0001529581,0.0004651918,0.0001161636,0.0000059725126,0.000016008999,0.00010319996,0.000008153988,0.00019287225],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99922305,0.00002040825,0.00029374126,0.0002837978,0.00002956378,0.00014940933],"domain_scores_gemma":[0.99960804,0.000023378076,0.00015744758,0.00016086794,0.0000011147259,0.000049149672],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00004463676,0.000126043,0.0002516993,0.000043053384,0.000041295738,0.000010208182,0.000087663444,0.0000895626,0.0020137294],"category_scores_gemma":[0.0000016054412,0.00011538372,0.00006215642,0.00011317888,0.0004147297,0.00010792967,0.00016205302,0.000065775836,0.000059086924],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008941571,0.00007144298,0.0036726114,0.0000051350826,0.00013385997,3.3442274e-7,0.00036072827,0.00003869701,0.99279207,0.0000679234,0.00014344572,0.002704825],"study_design_scores_gemma":[0.0004132882,0.000072044815,0.34755823,0.0000034717732,0.00035017857,0.000019012938,0.00042732278,0.00008491494,0.64906585,0.00024452194,0.0015765214,0.00018464137],"about_ca_topic_score_codex":0.0007324048,"about_ca_topic_score_gemma":0.000028614224,"teacher_disagreement_score":0.3438856,"about_ca_system_score_codex":0.00002759356,"about_ca_system_score_gemma":0.0000017585417,"threshold_uncertainty_score":0.99889857},"labels":[],"label_agreement":null},{"id":"W1990529163","doi":"10.1128/aem.00359-08","title":"Heterotrophic and Autotrophic Microbial Populations in Cold Perennial Springs of the High Arctic","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; McGill University; National Research Council Canada; Biotechnology Research Institute","funders":"Canadian Space Agency; Fonds Québécois de la Recherche sur la Nature et les Technologies; Natural Sciences and Engineering Research Council of Canada; McGill University; National Aeronautics and Space Administration","keywords":"Microbial mat; Autotroph; Heterotroph; Anoxygenic photosynthesis; Phototroph; Microbial population biology; Biology; Firmicutes; Environmental chemistry; Proteobacteria; Botany; Ecology; Actinobacteria; Methanogenesis; Bacteria; Cyanobacteria; Photosynthesis; Chemistry; 16S ribosomal RNA; Methane","score_opus":0.009176458463105355,"score_gpt":0.17386072758314958,"score_spread":0.16468426912004422,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990529163","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99928683,0.00012513887,0.0000042629417,0.00011223874,0.00007999489,0.00024126812,0.000024625646,0.000005195888,0.00012045784],"genre_scores_gemma":[0.99919856,0.00019492552,0.0002891884,0.00014698096,0.000014727539,0.000010982452,0.000018568204,0.000011116041,0.000114974595],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99918723,0.000042475844,0.0002239126,0.0002876149,0.000040567775,0.00021818069],"domain_scores_gemma":[0.9997096,0.000014754761,0.00008066005,0.00014968333,4.02248e-7,0.00004491605],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000057065266,0.000142032,0.00018816722,0.000027117403,0.00014598735,0.000003269357,0.000109123655,0.000118324875,0.00035291043],"category_scores_gemma":[0.0000015159397,0.00010426644,0.000030276073,0.00007113756,0.00091614045,0.000028452234,0.00028995,0.0001784778,0.000027951459],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016325941,0.000058778245,0.09068359,0.000005517028,0.0000067561664,0.000002029047,0.00024510734,0.00061552285,0.9080239,0.0002328941,0.000014347807,0.00009525729],"study_design_scores_gemma":[0.0017382961,0.0001244342,0.9720004,0.000016710077,0.000032188836,0.00028041942,0.000049246883,0.000093286464,0.022885367,0.00086770934,0.001584203,0.0003277117],"about_ca_topic_score_codex":0.00047713798,"about_ca_topic_score_gemma":0.000043603344,"teacher_disagreement_score":0.8851385,"about_ca_system_score_codex":0.000061887884,"about_ca_system_score_gemma":0.0000028874929,"threshold_uncertainty_score":0.4251862},"labels":[],"label_agreement":null},{"id":"W1990883071","doi":"10.1128/aem.00721-13","title":"Novel Rickettsiella Bacterium in the Leafhopper Orosius albicinctus (Hemiptera: Cicadellidae)","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"National Cancer Institute","keywords":"Leafhopper; Biology; Obligate; Wolbachia; Hemiptera; Botany; Bacteria; Microbiology; Genetics","score_opus":0.007187914607994718,"score_gpt":0.15618790541867772,"score_spread":0.148999990810683,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990883071","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99732816,0.00009853374,5.4179543e-7,0.0010238133,0.00006938953,0.00029477922,0.000044266075,0.000011245844,0.0011292534],"genre_scores_gemma":[0.9961715,0.00010611639,0.000031825202,0.0032849738,0.00012640723,0.000055960627,0.00017043519,0.0000012408134,0.000051550618],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99907464,0.000036148118,0.00021242036,0.00031459358,0.0000377853,0.00032442022],"domain_scores_gemma":[0.9997435,0.00009756669,0.000055542856,0.000060771014,0.0000018963941,0.000040711297],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00010920625,0.00017550199,0.00017736931,0.000008657972,0.00014455928,0.000061678926,0.00022037535,0.0001470295,0.0011911187],"category_scores_gemma":[0.0000015495989,0.000058999307,0.00004025,0.00006313906,0.0002337087,0.000059574726,0.00009546371,0.00013777813,0.00019433834],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008735177,0.000092456175,0.0045802193,0.0000015447488,0.000004658312,6.15507e-7,0.00015594628,2.8281622e-7,0.9875599,0.000063749496,0.00027487258,0.007256992],"study_design_scores_gemma":[0.00045554552,0.00025396163,0.8516689,0.000008431159,0.000012806189,0.00012739406,0.0018449862,0.000004355383,0.09138102,0.00019529156,0.053610187,0.0004371291],"about_ca_topic_score_codex":0.00044052323,"about_ca_topic_score_gemma":0.00006633787,"teacher_disagreement_score":0.8961789,"about_ca_system_score_codex":0.000016428909,"about_ca_system_score_gemma":0.0000012762333,"threshold_uncertainty_score":0.99972194},"labels":[],"label_agreement":null},{"id":"W1991090491","doi":"10.1128/aem.01492-06","title":"Mixed-Valence Cytoplasmic Iron Granules Are Linked to Anaerobic Respiration","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; University of Guelph","funders":"Pacific Northwest National Laboratory; Basic Energy Sciences; Biological and Environmental Research; Natural Sciences and Engineering Research Council of Canada; Office of Science; University of Notre Dame; U.S. Department of Energy","keywords":"Shewanella putrefaciens; Ferrous; Ferric; Valence (chemistry); Chemistry; Metal; Microbiology; Bacteria; Biochemistry; Biophysics; Inorganic chemistry; Biology; Genetics","score_opus":0.005340408545143562,"score_gpt":0.16323354340301538,"score_spread":0.15789313485787182,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991090491","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981582,0.00008594028,0.00017150141,0.00020116713,0.00011753848,0.00036228637,0.00010202759,0.00003509583,0.0007662491],"genre_scores_gemma":[0.9970886,0.0000927674,0.0012141136,0.00074260385,0.000093802104,0.000025146493,0.00043805694,0.000018008264,0.00028689977],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987444,0.00003626787,0.0002616173,0.00054615265,0.000065955894,0.00034556724],"domain_scores_gemma":[0.99960333,0.000021240752,0.000105672225,0.00018520474,9.0355496e-7,0.00008366172],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000118792916,0.0002219239,0.00018694653,0.000042370022,0.000178861,0.00002229982,0.0001445629,0.00016453957,0.0004673828],"category_scores_gemma":[0.0000020108344,0.00020461927,0.000037293514,0.00008884483,0.00026618235,0.000064618085,0.00020458581,0.0001086647,0.001077204],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002592999,0.00006855428,0.02131339,0.0000068553013,0.0000022824604,0.0000021288608,0.00004498877,0.00037230994,0.9725543,0.00006335323,0.003167847,0.002378028],"study_design_scores_gemma":[0.001439285,0.0003204797,0.5769914,0.000018753657,0.00004872806,0.000065423046,0.00034782916,0.000076224664,0.286964,0.00062928285,0.13205943,0.0010391974],"about_ca_topic_score_codex":0.00020347006,"about_ca_topic_score_gemma":0.00038628685,"teacher_disagreement_score":0.6855903,"about_ca_system_score_codex":0.00013659851,"about_ca_system_score_gemma":0.0000022562258,"threshold_uncertainty_score":0.99970055},"labels":[],"label_agreement":null},{"id":"W1991218055","doi":"10.1128/aem.01454-14","title":"Metabolic Engineering of a Glycerol-Oxidative Pathway in Lactobacillus panis PM1 for Utilization of Bioethanol Thin Stillage: Potential To Produce Platform Chemicals from Glycerol","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Glycerol; Stillage; Food science; Chemistry; Lactic acid; Metabolic engineering; Biochemistry; Fermentation; Glycerol kinase; Biology; Bacteria; Enzyme","score_opus":0.006378300747033589,"score_gpt":0.18924611781743256,"score_spread":0.18286781707039898,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991218055","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939619,0.00045153647,0.0046986844,0.00001934012,0.00010119338,0.0004243767,0.00032698974,0.000007856767,0.000008178236],"genre_scores_gemma":[0.996736,0.00015812,0.0021728955,0.000040719086,0.00012239777,0.000038400238,0.00069801346,0.000020221789,0.000013239273],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99906737,0.0000144341975,0.00029025506,0.00039983957,0.000031865882,0.00019624658],"domain_scores_gemma":[0.9996448,0.00000961813,0.00010208415,0.00019307798,0.000008308926,0.000042121323],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013556588,0.00017854088,0.00030680338,0.00006244859,0.000018089675,0.000003437919,0.000092567614,0.00019077178,0.000007455588],"category_scores_gemma":[0.000032766846,0.00016872644,0.000048073463,0.00006043468,0.00007825187,0.0000042695556,0.00009392408,0.000060883016,0.0000014432625],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020251596,0.00006775159,0.00012742265,0.00003059826,0.00004434872,6.226305e-8,0.00012485859,0.0007360237,0.99483925,0.000065840904,0.000012730429,0.0037485755],"study_design_scores_gemma":[0.00081165414,0.00017629699,0.0013660007,0.000010671572,0.000020447751,0.000004689618,0.00006796597,0.0000821534,0.9926176,0.000025233308,0.004652717,0.00016453255],"about_ca_topic_score_codex":0.000037642447,"about_ca_topic_score_gemma":0.000006188605,"teacher_disagreement_score":0.004639987,"about_ca_system_score_codex":0.000010610179,"about_ca_system_score_gemma":0.0000075080766,"threshold_uncertainty_score":0.68804646},"labels":[],"label_agreement":null},{"id":"W1991243989","doi":"10.1128/aem.01481-10","title":"Global Phylogeography of Chitinase Genes in Aquatic Metagenomes","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Studies on Chitinases and Chitosanases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Vetenskapsrådet; Svenska Forskningsrådet Formas","keywords":"Biology; Chitinase; Biological dispersal; Metagenomics; 16S ribosomal RNA; Phylogeography; Salinity; Gene; Phylogenetics; Ribosomal RNA; Ecology; Evolutionary biology; Genetics","score_opus":0.0021362100274138662,"score_gpt":0.17983097404610388,"score_spread":0.17769476401869,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991243989","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967275,0.0020456961,0.000012025286,0.000023315195,0.00006291514,0.000118016476,0.0002688239,0.0000030496208,0.0007386199],"genre_scores_gemma":[0.9982498,0.00076185545,0.0003712701,0.0001825719,0.000051332514,0.000017669952,0.00034919736,0.000007669859,0.00000860162],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993259,0.0000144093465,0.00016863387,0.00027505032,0.000020644744,0.00019541709],"domain_scores_gemma":[0.99973565,0.000009506116,0.000058640246,0.00015650484,9.908965e-7,0.000038709095],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000037893886,0.00013991137,0.0001804312,0.000027291335,0.000039079998,0.0000028963825,0.00009132958,0.00010869967,0.000029805784],"category_scores_gemma":[0.000003388301,0.00012652627,0.00005560437,0.00004272258,0.00037835276,9.646357e-7,0.00013693392,0.000055014127,0.0000028127804],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029606957,0.000089356174,0.115842804,0.000007171731,0.000038601585,0.0000013214753,0.000014114786,0.00000357434,0.8787788,0.00010455273,0.000032088217,0.0050580185],"study_design_scores_gemma":[0.00158005,0.0003300811,0.34929812,0.0000043891055,0.000047389847,0.000084595435,0.0010292004,0.0000035959324,0.6308702,0.00034462003,0.016006194,0.00040153434],"about_ca_topic_score_codex":0.000030368688,"about_ca_topic_score_gemma":0.0003085698,"teacher_disagreement_score":0.24790856,"about_ca_system_score_codex":0.0000029106066,"about_ca_system_score_gemma":0.0000058368296,"threshold_uncertainty_score":0.51595914},"labels":[],"label_agreement":null},{"id":"W1991424568","doi":"10.1128/aem.72.4.2661-2671.2006","title":"Genes of<i>Escherichia coli</i>O157:H7 That Are Involved in High-Pressure Resistance","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Inactivation Methods","field":"Biochemistry, Genetics and Molecular Biology","cited_by":107,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; U.S. Army Natick Soldier Research, Development and Engineering Center; Heart Research Institute","keywords":"Escherichia coli; Thioredoxin reductase; Biology; Sigma factor; Microbiology; Molecular biology; Mutant; Pulsed-field gel electrophoresis; Thioredoxin; Reductase; Gene; Gel electrophoresis; Strain (injury); Gene cluster; Plasmid; Bacteria; Biochemistry; Genetics; Genotype; Enzyme","score_opus":0.006074459189838602,"score_gpt":0.19406226457569428,"score_spread":0.1879878053858557,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991424568","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99654067,0.0023486158,0.00031611306,0.00005852627,0.000054057517,0.00019745753,0.00013977033,0.000005684526,0.00033911815],"genre_scores_gemma":[0.99482286,0.00035498227,0.003491388,0.00025606737,0.00006114839,0.000021900218,0.00048369778,0.000019657724,0.0004882822],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99909943,0.000075875774,0.00021738738,0.00037517777,0.000026183263,0.00020591664],"domain_scores_gemma":[0.9995927,0.000016999094,0.00014637524,0.00021457732,0.0000033037763,0.000026051755],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011389778,0.00017050633,0.0002364863,0.00003577322,0.00004140767,0.0000051745947,0.00010154745,0.00023740207,0.000031877375],"category_scores_gemma":[0.000003126461,0.00017174055,0.000034666748,0.000045417404,0.0002615933,0.0000030819922,0.00012499378,0.00008778607,0.0000033984704],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000101299636,0.00007645256,0.016743988,0.00002444433,0.00002179505,0.0000012118702,0.0000133480535,0.000048886883,0.9818736,0.00022224289,0.0007692521,0.00010349281],"study_design_scores_gemma":[0.00067647744,0.000029579951,0.04014462,0.0000070556825,0.000013117771,0.0000030632925,0.00011939219,8.34312e-7,0.9031802,0.00015963694,0.055488992,0.000177068],"about_ca_topic_score_codex":0.000061960294,"about_ca_topic_score_gemma":0.00016094491,"teacher_disagreement_score":0.07869342,"about_ca_system_score_codex":0.000015297504,"about_ca_system_score_gemma":0.000008752902,"threshold_uncertainty_score":0.70033765},"labels":[],"label_agreement":null},{"id":"W1991936590","doi":"10.1128/aem.02268-12","title":"Identification of Methanoculleus spp. as Active Methanogens during Anoxic Incubations of Swine Manure Storage Tank Samples","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Anaerobic Digestion and Biogas Production","field":"Engineering","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada; University of Waterloo; Agriculture and Agri-Food Canada","funders":"","keywords":"Anoxic waters; Manure; Biology; Microbiology; Microorganism; Identification (biology); Bacteria; Botany; Ecology","score_opus":0.005347879058849897,"score_gpt":0.183569958638118,"score_spread":0.1782220795792681,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991936590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984368,0.00045740334,0.0003137564,0.000014572205,0.00009657928,0.00014345342,0.00016058625,0.000026511703,0.00035032546],"genre_scores_gemma":[0.9987976,0.00048379714,0.00024831822,0.000008122046,0.00004111086,0.000012849669,0.00026967903,0.000012705574,0.00012579345],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994611,0.000018729677,0.00021713378,0.00013175054,0.00002835385,0.0001429016],"domain_scores_gemma":[0.9997566,0.000015441881,0.00007261261,0.00011744504,0.0000024238714,0.000035510595],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007633023,0.000109258915,0.00015806602,0.0000718038,0.00003940597,0.000002013866,0.000049283564,0.00009381227,0.00033983652],"category_scores_gemma":[0.000002465874,0.000108052016,0.000031247248,0.000054477237,0.0001380236,0.000071984796,0.000028763508,0.00006422661,0.000038748152],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002034585,0.000055555814,0.00033557008,0.000016643218,0.000057528217,8.364799e-8,0.00031170418,0.00025691502,0.9972311,0.00059430476,0.00003208231,0.0010881515],"study_design_scores_gemma":[0.0002049999,0.00002078678,0.022072164,0.0000035712344,0.00004025325,0.000019316038,0.0005821003,0.0000049212163,0.9745834,0.0000537878,0.00231321,0.00010148647],"about_ca_topic_score_codex":0.0000066393136,"about_ca_topic_score_gemma":0.0000010682896,"teacher_disagreement_score":0.022647712,"about_ca_system_score_codex":0.000039610226,"about_ca_system_score_gemma":0.0000019622555,"threshold_uncertainty_score":0.4406233},"labels":[],"label_agreement":null},{"id":"W1992100473","doi":"10.1128/aem.66.5.2216-2219.2000","title":"Simultaneous Immunofluorescent Detection of Coentrapped Cells in Gel Beads","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Confocal microscopy; Bacteria; Confocal; Starter; Lactic acid; Chromatography; Cell; Chemistry; Microscopy; Biology; Molecular biology; Biochemistry; Cell biology; Food science; Pathology","score_opus":0.0024651211502292707,"score_gpt":0.14195378721410362,"score_spread":0.13948866606387436,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1992100473","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99918,0.00021536874,0.0000012210793,0.000025895015,0.000027005404,0.00015985893,0.000095836345,0.000008413895,0.00028640844],"genre_scores_gemma":[0.99903965,0.0006755271,0.000018132576,0.000086717635,0.000016157192,0.0000049234586,0.000114276256,9.3095e-7,0.00004370936],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99938315,0.00001894954,0.00017480916,0.00020383844,0.000022512417,0.00019674048],"domain_scores_gemma":[0.9998588,0.000038784277,0.000035756766,0.000034260673,8.6256443e-7,0.000031551153],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000045657096,0.00010388565,0.0001411121,0.00000862983,0.00004812196,0.0000047635926,0.000076990254,0.00011178212,0.0003647351],"category_scores_gemma":[4.6061945e-7,0.00004967832,0.000028565159,0.00004886953,0.00013500157,0.000012208632,0.000035113528,0.00008318889,0.000025954972],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000895108,0.00012205665,0.00031268934,0.0000018934197,0.0000063107873,0.0000013371894,0.000029429144,0.000017688913,0.87876314,0.000009100008,0.0000024504984,0.1206444],"study_design_scores_gemma":[0.00062220846,0.0005394192,0.018958902,0.000008475138,0.000011199697,0.00002222733,0.00027941572,0.000112881076,0.9686577,0.000060060116,0.010507594,0.00021994772],"about_ca_topic_score_codex":0.00007792944,"about_ca_topic_score_gemma":0.000044146822,"teacher_disagreement_score":0.12042446,"about_ca_system_score_codex":0.00003188393,"about_ca_system_score_gemma":8.334726e-7,"threshold_uncertainty_score":0.39935935},"labels":[],"label_agreement":null},{"id":"W1992213934","doi":"10.1128/aem.68.9.4364-4369.2002","title":"Effect of Exopolysaccharides on Phage-Host Interactions in <i>Lactococcus lactis</i>","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":108,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Université Laval","funders":"","keywords":"Microbiology; Lactococcus lactis; Galactose; Lytic cycle; Biology; Lactococcus; Bacteriophage; Strain (injury); Rhamnose; Virulence; Multiplex polymerase chain reaction; Bacteria; Gene; Biochemistry; Escherichia coli; Virology; Polymerase chain reaction; Virus; Genetics; Lactic acid","score_opus":0.005684785021989179,"score_gpt":0.20700202557689698,"score_spread":0.2013172405549078,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1992213934","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.991685,0.0000461649,0.0000061682795,0.0000749113,0.00012355873,0.0002970448,0.00006382657,0.000014249994,0.007689121],"genre_scores_gemma":[0.9990036,0.00013098365,0.000040854327,0.0002748755,0.000018907689,0.00004298523,0.000027032873,0.000015407371,0.00044539216],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99909866,0.000055106604,0.00023451695,0.00033592194,0.000029966728,0.0002458448],"domain_scores_gemma":[0.9995564,0.00013283202,0.000088636254,0.00016791481,3.3036713e-7,0.000053870936],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007840115,0.00019214212,0.00023852022,0.00005629833,0.000072331815,0.00000892956,0.000108616885,0.00007003453,0.006304966],"category_scores_gemma":[0.0000034868488,0.00016662605,0.00005346356,0.000069303285,0.00030533006,0.00008885561,0.00013887133,0.00021633269,0.0007354103],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006042265,0.00018540671,0.0033129063,0.000006130525,0.000010979585,0.0000040445807,0.00016480997,0.000014953361,0.9857151,0.000011786161,0.00051536027,0.009998116],"study_design_scores_gemma":[0.0014295517,0.0005906201,0.03420614,0.000023994682,0.000032315136,0.00012588709,0.00014491491,0.000043846605,0.937204,0.000013210279,0.025854964,0.0003305605],"about_ca_topic_score_codex":0.00015168847,"about_ca_topic_score_gemma":0.00007340019,"teacher_disagreement_score":0.04851109,"about_ca_system_score_codex":0.0001081774,"about_ca_system_score_gemma":5.6855174e-7,"threshold_uncertainty_score":0.9946034},"labels":[],"label_agreement":null},{"id":"W1992775178","doi":"10.1128/aem.02150-07","title":"Capacity of Human Nisin- and Pediocin-Producing Lactic Acid Bacteria To Reduce Intestinal Colonization by Vancomycin-Resistant Enterococci","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":152,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Montréal; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Pediococcus acidilactici; Microbiology; Nisin; Lactococcus lactis; Bacteriocin; Enterococcus faecium; Biology; Lactic acid; Enterococcus; Bacteria; Lactobacillus; Pediococcus; Lactobacillus plantarum; Antibiotics; Antimicrobial","score_opus":0.012591446185764901,"score_gpt":0.18706190786807994,"score_spread":0.17447046168231503,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1992775178","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99924386,0.00014465625,0.0000067373962,0.00015010992,0.000045235527,0.00019131984,0.00013470248,0.000011674475,0.00007168673],"genre_scores_gemma":[0.9992178,0.000057851907,0.00021798219,0.00015421136,0.000049355385,0.000007328898,0.00025309823,0.0000016980397,0.000040646075],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992366,0.000026613823,0.00019032769,0.00032657236,0.000029407205,0.00019047952],"domain_scores_gemma":[0.999768,0.000022798025,0.00008279988,0.000048149097,0.000003881518,0.00007437485],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006866058,0.00013589603,0.00018842728,0.000010674924,0.00020813933,0.000008692755,0.000079868354,0.00007884853,0.000064003114],"category_scores_gemma":[0.0000039675133,0.00007179914,0.000018874576,0.000049329385,0.00022062846,0.000027886557,0.00012305287,0.00008064229,0.0000043433492],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051302966,0.00008834997,0.0075272494,0.0000070483416,0.00000973582,7.928976e-7,0.00017453577,1.2020256e-7,0.9907007,0.000025966656,0.00019791725,0.0012162862],"study_design_scores_gemma":[0.00029018425,0.00069798075,0.2169098,0.000012277616,0.000014427529,0.00007422996,0.00019175216,8.829614e-7,0.78001153,0.00004220545,0.0015760309,0.00017867371],"about_ca_topic_score_codex":0.000053305117,"about_ca_topic_score_gemma":0.000023978608,"teacher_disagreement_score":0.21068914,"about_ca_system_score_codex":0.00002742401,"about_ca_system_score_gemma":0.0000016174417,"threshold_uncertainty_score":0.2927884},"labels":[],"label_agreement":null},{"id":"W1992958186","doi":"10.1128/aem.00444-08","title":"<i>Escherichia coli</i> Populations in Great Lakes Waterfowl Exhibit Spatial Stability and Temporal Shifting","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fecal contamination and water quality","field":"Environmental Science","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Waterfowl; Biology; Juvenile; Population; Escherichia coli; Zoology; Ecology; DNA profiling; Habitat; Genetics; Demography","score_opus":0.017233473774444775,"score_gpt":0.21417187944296479,"score_spread":0.19693840566852,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1992958186","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980128,0.000033361193,0.00010079059,0.00033715437,0.000028309638,0.00023562412,0.000030135348,0.000019529924,0.0012022968],"genre_scores_gemma":[0.99863064,0.000012414163,0.00038259337,0.00074891374,0.000013838582,0.000009404078,0.000142207,0.0000063122598,0.0000536469],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999,0.00007077312,0.00024536374,0.0003910068,0.000043063304,0.00024975292],"domain_scores_gemma":[0.9997414,0.000019688532,0.000048729245,0.00011533472,4.2846102e-7,0.00007446671],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020353124,0.00015799124,0.00018075241,0.000020128204,0.00011792496,0.00001667441,0.00006644443,0.00010569064,0.00050989655],"category_scores_gemma":[0.0000028131687,0.00014031517,0.000019257242,0.000043965738,0.0003006991,0.00007978981,0.00011786078,0.00012667064,0.000042535932],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025366759,0.000079550264,0.34693885,0.0000030139163,0.0000016990921,0.0000015994235,0.00046964758,0.000005626836,0.646156,0.00012192582,0.000022346965,0.0061743683],"study_design_scores_gemma":[0.0007521308,0.00010539602,0.96851,0.000003607444,0.0000073286506,0.000008152832,0.00020498154,0.00011606373,0.027382774,0.0009098206,0.0017554916,0.00024430885],"about_ca_topic_score_codex":0.0003776873,"about_ca_topic_score_gemma":0.0005665919,"teacher_disagreement_score":0.62157106,"about_ca_system_score_codex":0.00008278866,"about_ca_system_score_gemma":0.0000016774524,"threshold_uncertainty_score":0.5721887},"labels":[],"label_agreement":null},{"id":"W1992964569","doi":"10.1128/aem.71.9.5624-5626.2005","title":"Rapid and Quantitative Detection of Hepatitis A Virus from Green Onion and Strawberry Rinses by Use of Real-Time Reverse Transcription-PCR","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Hepatitis a virus; Reverse transcription polymerase chain reaction; Reverse transcriptase; Real-time polymerase chain reaction; Biology; Virus; Virology; Hepatitis C virus; Polymerase chain reaction; Microbiology; Chemistry; Gene; Biochemistry; Gene expression","score_opus":0.015042452657019117,"score_gpt":0.22850571699547026,"score_spread":0.21346326433845114,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1992964569","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978001,0.0008386156,0.00008719968,0.00015706685,0.000009394729,0.00020806967,0.0008738661,0.0000062858344,0.000019413987],"genre_scores_gemma":[0.9782798,0.019592386,0.0015683058,0.00016387682,0.000014880626,0.000008656621,0.00033010845,0.000008731194,0.000033222193],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99925643,0.00007379626,0.00024161613,0.00023794729,0.00002860124,0.00016159599],"domain_scores_gemma":[0.9996994,0.000050887025,0.00007854499,0.000076079894,0.000002603109,0.000092459966],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000065066226,0.00011353173,0.00033642,0.000046904064,0.000034513254,0.0000022854206,0.000020618114,0.000107199136,0.00008314777],"category_scores_gemma":[0.000009820696,0.00010325873,0.000028211232,0.000017950835,0.0005642074,0.00005728147,0.00003376704,0.00009358445,0.0000034349227],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00065795734,0.00008719094,0.011922673,0.000025458587,0.00006794799,0.0000016479427,0.00016684194,4.957859e-7,0.9713586,0.0000068745103,0.00011781966,0.0155865],"study_design_scores_gemma":[0.004284033,0.00347617,0.38507262,0.000072730974,0.0001379182,0.00018524693,0.0003922184,0.00017872753,0.60057,0.00008038919,0.005324811,0.00022507695],"about_ca_topic_score_codex":0.0046128836,"about_ca_topic_score_gemma":0.0002908225,"teacher_disagreement_score":0.37314996,"about_ca_system_score_codex":0.000018898258,"about_ca_system_score_gemma":0.0000039999136,"threshold_uncertainty_score":0.69733304},"labels":[],"label_agreement":null},{"id":"W1993177630","doi":"10.1128/aem.00218-07","title":"Temporal Dynamics and Impact of Manure Storage on Antibiotic Resistance Patterns and Population Structure of <i>Escherichia coli</i> Isolates from a Commercial Swine Farm","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada","keywords":"Manure; Biology; Feces; Nalidixic acid; Population; Tetracycline; Amikacin; Veterinary medicine; Sulfamethoxazole; Antibiotic resistance; Fecal coliform; Microbiology; Escherichia coli; Kanamycin; Antibiotics; Agronomy; Ecology","score_opus":0.00558840703384474,"score_gpt":0.22466553384105212,"score_spread":0.21907712680720737,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1993177630","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99842095,0.00011748231,0.000060724888,0.000032461703,0.000028693676,0.00021604772,0.0009942732,0.000006932046,0.00012245656],"genre_scores_gemma":[0.99881834,0.0001496225,0.00034570863,0.00018570932,0.000016776363,2.4359343e-7,0.00044714063,0.00001657375,0.000019896153],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990008,0.000029491155,0.00028449128,0.00035515113,0.00006270046,0.00026734886],"domain_scores_gemma":[0.99952245,0.00006138475,0.00015849582,0.00013019203,4.8462016e-7,0.00012700664],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000076956,0.00023902612,0.00032403294,0.000028532742,0.00007425282,0.0000069963326,0.00008015138,0.00015873197,0.00016281025],"category_scores_gemma":[0.0000020420857,0.00019689165,0.00003752765,0.000045096644,0.00059463514,0.000048317015,0.00018345569,0.00016492218,0.0000026914968],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014692725,0.00008720889,0.416935,0.000014215322,0.00002112453,0.0000017368938,0.00008000728,0.000019546716,0.5808827,0.000020856845,0.000006936231,0.0017837118],"study_design_scores_gemma":[0.0007816276,0.00021981185,0.93388563,0.00002280858,0.00003656108,0.000008341573,0.00012709,0.00008568605,0.06448973,0.00011947183,0.00003200615,0.00019124642],"about_ca_topic_score_codex":0.0007559698,"about_ca_topic_score_gemma":0.0006952137,"teacher_disagreement_score":0.5169506,"about_ca_system_score_codex":0.00010719762,"about_ca_system_score_gemma":0.000001550476,"threshold_uncertainty_score":0.80290085},"labels":[],"label_agreement":null},{"id":"W1993937269","doi":"10.1128/aem.68.10.4803-4808.2002","title":"Replacement of Trifluoroacetic Acid with HCl in the Hydrophobic Purification Steps of Pediocin PA-1: a Structural Effect","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":104,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Trifluoroacetic acid; Chemistry; Yield (engineering); Folding (DSP implementation); Circular dichroism; Chromatography; Fourier transform infrared spectroscopy; Combinatorial chemistry; Biochemistry; Chemical engineering; Materials science","score_opus":0.004952940362923391,"score_gpt":0.15003312918692666,"score_spread":0.14508018882400325,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1993937269","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99881274,0.00031681196,8.732e-7,0.0001389814,0.000012327165,0.0003427662,0.0000439073,0.0000033332171,0.00032826967],"genre_scores_gemma":[0.99962723,0.00016081001,0.000033360713,0.000050947412,0.000012424064,0.00001659026,0.00008574179,8.61797e-7,0.000012060834],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993858,0.0000603223,0.00017803146,0.00019225864,0.000041384752,0.00014221383],"domain_scores_gemma":[0.9997711,0.00005009964,0.00009645793,0.000063607695,0.0000010916027,0.000017615834],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012542446,0.0001067606,0.00016927093,0.0000103382945,0.000044859567,0.0000039554966,0.00011938,0.00007090529,0.00009871139],"category_scores_gemma":[8.833573e-7,0.000035723184,0.00002624141,0.000070756025,0.00019558004,0.0000144771175,0.000035530808,0.00008023432,0.0000028362995],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000781066,0.00007194128,0.005976603,0.000008781853,0.000010419821,3.004021e-7,0.00017609431,0.0000025708832,0.9860698,0.000091956485,0.000012412227,0.0075010024],"study_design_scores_gemma":[0.0030018082,0.0071004964,0.29234838,0.00003758806,0.000098625846,0.00010997647,0.001820188,0.00019235825,0.6920583,0.00027496868,0.0024712314,0.00048608717],"about_ca_topic_score_codex":0.000016491093,"about_ca_topic_score_gemma":0.000017186409,"teacher_disagreement_score":0.2940115,"about_ca_system_score_codex":0.000013559261,"about_ca_system_score_gemma":5.7905544e-7,"threshold_uncertainty_score":0.14567491},"labels":[],"label_agreement":null},{"id":"W1994735886","doi":"10.1128/aem.71.7.3872-3881.2005","title":"Effects of Subtherapeutic Administration of Antimicrobial Agents to Beef Cattle on the Prevalence of Antimicrobial Resistance in <i>Campylobacter jejuni</i> and <i>Campylobacter hyointestinalis</i>","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Agriculture and Agri-Food Canada","funders":"Medical Research Council","keywords":"Campylobacter jejuni; Campylobacter; Antimicrobial; Antibiotic resistance; Microbiology; Biology; Campylobacter coli; Bacteria; Antibiotics","score_opus":0.008310747013618159,"score_gpt":0.19413125975009457,"score_spread":0.1858205127364764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1994735886","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99805063,0.00015245973,0.0000019657123,0.00097038737,0.00003872984,0.00044886078,0.00022114952,0.000005743122,0.00011004892],"genre_scores_gemma":[0.9978198,0.00034440996,0.00012915867,0.0015475629,0.000039411992,0.000013175524,0.000054184547,0.0000027643002,0.0000495547],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99870586,0.0001486315,0.00044886314,0.0003815353,0.000046981768,0.0002681147],"domain_scores_gemma":[0.9991314,0.000479983,0.00023093534,0.000099065786,0.000007230479,0.00005142385],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022518262,0.00020531623,0.00037445486,0.000024540595,0.000050622228,0.0000054313905,0.00020233255,0.00014215847,0.0000610606],"category_scores_gemma":[0.00001576469,0.00009969407,0.000054995584,0.00010282238,0.00044400952,0.00003374033,0.00011023783,0.000118093085,0.000006400734],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033279762,0.00027617018,0.027500458,0.000113320144,0.000015170892,8.2542874e-7,0.00015965162,0.0000025644483,0.96998966,0.00013939894,0.0002031302,0.0012668641],"study_design_scores_gemma":[0.00038579816,0.00028966114,0.48710403,0.000091565315,0.00002878294,0.000021741957,0.00004128584,6.5604803e-7,0.5102143,0.000045115026,0.0016242926,0.000152747],"about_ca_topic_score_codex":0.000033486187,"about_ca_topic_score_gemma":0.00012054918,"teacher_disagreement_score":0.45977533,"about_ca_system_score_codex":0.000021973943,"about_ca_system_score_gemma":0.0000053867147,"threshold_uncertainty_score":0.4065406},"labels":[],"label_agreement":null},{"id":"W1994783204","doi":"10.1128/aem.67.6.2484-2488.2001","title":"Best Viral Elution Method Available for Quantification of Enteroviruses in Sludge by Both Cell Culture and Reverse Transcription-PCR","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hotel Dieu Hospital","funders":"","keywords":"Enterovirus; TaqMan; Reverse transcriptase; Biology; RNA extraction; Chromatography; Poliovirus; Reverse transcription polymerase chain reaction; Genome; Elution; DNA extraction; Extraction (chemistry); Real-time polymerase chain reaction; Virology; Virus; Polymerase chain reaction; Chemistry; RNA; Messenger RNA; Biochemistry; Gene","score_opus":0.01890742594707797,"score_gpt":0.2668661512024773,"score_spread":0.24795872525539933,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1994783204","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99374807,0.0013193701,0.0037219992,0.00019529024,0.0000234887,0.00048793174,0.00032878373,0.0000056952695,0.00016939959],"genre_scores_gemma":[0.99015963,0.0044963663,0.003279761,0.00042563508,0.00001777639,0.000041568095,0.0008815604,0.000009435722,0.000688252],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99916595,0.000057264264,0.00023784957,0.0002804119,0.000021996057,0.00023652754],"domain_scores_gemma":[0.99977714,0.0000175617,0.000057662415,0.000084207924,0.0000024815806,0.00006092152],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018107305,0.00011086481,0.00027147555,0.000049295668,0.000036464393,0.0000029351945,0.000034389574,0.00012885954,0.00008242574],"category_scores_gemma":[0.0000057760267,0.00009715438,0.00003374539,0.000024430485,0.00019907254,0.000034479213,0.000021303706,0.00010561546,0.000015414602],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00056226377,0.00020463803,0.022944625,0.00006195558,0.0000131240095,0.0000012368283,0.00007450419,0.0000014164016,0.97131896,0.000025131007,0.0034264869,0.0013656426],"study_design_scores_gemma":[0.017153496,0.0051747994,0.02617172,0.00011973125,0.0001924197,0.00055766077,0.0027247067,0.00030779754,0.60036147,0.0003354322,0.34635976,0.0005409964],"about_ca_topic_score_codex":0.00012648402,"about_ca_topic_score_gemma":0.00002095907,"teacher_disagreement_score":0.3709575,"about_ca_system_score_codex":0.000036048055,"about_ca_system_score_gemma":0.0000042680044,"threshold_uncertainty_score":0.39618403},"labels":[],"label_agreement":null},{"id":"W1995167035","doi":"10.1128/aem.66.10.4396-4400.2000","title":"Identification of Collagen-Binding Proteins in <i>Lactobacillus</i> spp. with Surface-Enhanced Laser Desorption/Ionization–Time of Flight ProteinChip Technology","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Protein Hydrolysis and Bioactive Peptides","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Hand and Upper Limb Clinic; Lawson Health Research Institute","funders":"","keywords":"Lactobacillus casei; Chemistry; Lactobacillus rhamnosus; Mass spectrometry; Biochemistry; Binding protein; Molecular biology; Microbiology; Chromatography; Biology; Lactobacillus","score_opus":0.0020084849285498187,"score_gpt":0.16082749340530847,"score_spread":0.15881900847675864,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1995167035","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985707,0.00018833835,0.0002348205,0.000030667798,0.000005351826,0.0006889278,0.00012030303,0.00000641922,0.00015449112],"genre_scores_gemma":[0.9984062,0.0002338788,0.00048263287,0.0000200422,0.00001258708,0.000066940265,0.0004327651,0.000014771541,0.0003302097],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990668,0.000038368013,0.00032016615,0.0003567517,0.000041749674,0.00017610512],"domain_scores_gemma":[0.9995838,0.0000059770505,0.00017671,0.0002010092,0.000008154772,0.000024380688],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011274781,0.00015586265,0.0002291841,0.00006318075,0.000048566595,0.000004444316,0.000108704495,0.00022664145,0.000121538884],"category_scores_gemma":[0.000003329559,0.00013447576,0.000025892645,0.00014793963,0.0004010762,0.0000058758114,0.000054372907,0.000057326153,0.000019083363],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019890994,0.00015220507,0.002455201,0.00001831181,0.000041026477,4.1030972e-7,0.000042711734,0.00027094316,0.9955887,0.000012104794,0.000006945775,0.001212523],"study_design_scores_gemma":[0.0007146146,0.00023961901,0.0011120329,0.000014656158,0.000014472454,0.0000109050425,0.000097634016,0.000012440363,0.9971013,0.000029315255,0.0005030912,0.0001498831],"about_ca_topic_score_codex":0.00000765614,"about_ca_topic_score_gemma":0.000012412904,"teacher_disagreement_score":0.001512629,"about_ca_system_score_codex":0.000021513531,"about_ca_system_score_gemma":0.000015261026,"threshold_uncertainty_score":0.5483762},"labels":[],"label_agreement":null},{"id":"W1995400078","doi":"10.1128/aem.68.2.485-495.2002","title":"Molecular Analysis of <i>Dehalococcoides</i> 16S Ribosomal DNA from Chloroethene-Contaminated Sites throughout North America and Europe","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":450,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Toronto; McMaster University","keywords":"Dehalococcoides; 16S ribosomal RNA; Biology; Phylotype; Reductive dechlorination; Bioremediation; Phylogenetic tree; Environmental DNA; Ribosomal DNA; Ribosomal RNA; Genetics; Microbiology; Gene; Bacteria; Contamination; Ecology; Chemistry; Biodiversity","score_opus":0.004996966476312783,"score_gpt":0.16726385658253806,"score_spread":0.16226689010622528,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1995400078","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977905,0.00024856554,0.000032893287,0.000064504966,0.000022435803,0.00017472262,0.0007229169,0.000019320347,0.0009240984],"genre_scores_gemma":[0.9971512,0.0007507591,0.00024360076,0.0008129572,0.000009004035,0.0000040651958,0.0009601823,0.000014617239,0.000053599342],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987962,0.000050428902,0.0002963667,0.00052001333,0.000066925975,0.00027002837],"domain_scores_gemma":[0.9994945,0.0000445095,0.00015809701,0.00020443293,0.0000013765729,0.000097098404],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000036044523,0.00023454808,0.00037942038,0.0000534315,0.00007921592,0.0000122087395,0.00014651094,0.00011208019,0.0033301588],"category_scores_gemma":[0.0000034973332,0.00020672409,0.000062076906,0.0002459296,0.00080361293,0.00005081059,0.0002647165,0.00010096847,0.00029044042],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016346778,0.000099506186,0.107574455,0.0000018689856,0.00015807665,0.000004524579,0.00036830513,0.000041046427,0.8887322,0.0000037288908,0.00014489683,0.0028550385],"study_design_scores_gemma":[0.0012114663,0.00016888225,0.49449557,0.0000031197444,0.0006628249,0.000010914929,0.000297777,0.0005788211,0.4873945,0.000017775377,0.01454394,0.00061438465],"about_ca_topic_score_codex":0.00015955271,"about_ca_topic_score_gemma":0.00010585799,"teacher_disagreement_score":0.40133768,"about_ca_system_score_codex":0.000034195407,"about_ca_system_score_gemma":0.0000010347682,"threshold_uncertainty_score":0.99758095},"labels":[],"label_agreement":null},{"id":"W1996834987","doi":"10.1128/aem.70.4.1999-2012.2004","title":"Evolution of the Core Genome of <i>Pseudomonassyringae</i> , a Highly Clonal, Endemic PlantPathogen","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":456,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Genetics; Multilocus sequence typing; Phylogenetic tree; Population; Pseudomonas syringae; Genome; Genetic variation; Housekeeping gene; Evolutionary biology; Gene; Genotype","score_opus":0.007263848878670805,"score_gpt":0.1493765331676343,"score_spread":0.1421126842889635,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1996834987","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99770486,0.0006068031,0.0000014533687,0.00007398001,0.000047123944,0.000159518,0.0012831143,0.0000074903205,0.00011566461],"genre_scores_gemma":[0.9994194,0.00023883597,0.0000632712,0.000061874474,0.00003199533,0.000008246708,0.00016495906,8.4982685e-7,0.000010558795],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99939847,0.00001690372,0.00019220947,0.00019409231,0.00003635785,0.00016195656],"domain_scores_gemma":[0.9997543,0.00004055261,0.00013001611,0.000050427294,0.0000019066136,0.000022772196],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006648112,0.00011153335,0.00019011536,0.0000057766824,0.00008724159,0.0000015596642,0.00015653405,0.0000931092,0.00001906728],"category_scores_gemma":[0.0000018072641,0.000042393105,0.000052007857,0.00004899671,0.00036092615,0.00001389701,0.00019108251,0.00006768083,0.000005697248],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027975468,0.000050874936,0.00902927,0.000004936007,0.000017272252,5.1933233e-7,0.000056633697,0.000008331392,0.98997414,0.00054400857,0.000007738278,0.00027828838],"study_design_scores_gemma":[0.00059654977,0.00018746393,0.71483177,0.000017259894,0.000043100965,0.00020339717,0.00043776992,6.05153e-7,0.2787875,0.0010442435,0.0036436226,0.00020670552],"about_ca_topic_score_codex":0.000044631914,"about_ca_topic_score_gemma":0.00003916142,"teacher_disagreement_score":0.71118665,"about_ca_system_score_codex":0.000040975752,"about_ca_system_score_gemma":0.0000042938063,"threshold_uncertainty_score":0.17287406},"labels":[],"label_agreement":null},{"id":"W1996876494","doi":"10.1128/aem.01567-08","title":"CO <sub>2</sub> Production as an Indicator of Biofilm Metabolism","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biofilm; Carbon fibers; Chemistry; Extracellular polymeric substance; Environmental chemistry; Strain (injury); Microbiology; Bacteria; Biology; Materials science","score_opus":0.0032598791037140246,"score_gpt":0.18520214028800347,"score_spread":0.18194226118428944,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1996876494","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991647,0.0002891911,0.00000446071,0.00007595482,0.00009210914,0.00015297576,0.00005533914,0.000007813009,0.00015744215],"genre_scores_gemma":[0.9978101,0.00046679072,0.00021595384,0.00040997216,0.00017204603,0.0000030000533,0.00089766603,0.000011446488,0.000012983363],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991965,0.00002842678,0.00017049875,0.00038553445,0.000024035573,0.00019496969],"domain_scores_gemma":[0.9996482,0.0000020450218,0.00009183664,0.00019255868,0.0000021859796,0.00006313779],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007757691,0.00014992741,0.00017370058,0.00003398288,0.00006642795,0.000006127505,0.00006668596,0.00020442119,0.000011697406],"category_scores_gemma":[0.0000025281151,0.00013933517,0.00003562402,0.000022006865,0.0002290604,0.000004179533,0.000031094638,0.000063272135,0.000015738218],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010065572,0.00009932448,0.00015151627,0.0000028909242,0.000021595059,4.8774274e-7,0.000036670517,7.1240777e-7,0.9880837,0.00009506706,0.000117142794,0.011290191],"study_design_scores_gemma":[0.00032444464,0.00029089357,0.008166238,0.000001784989,0.000018999273,0.0000745363,0.00007937738,2.0428362e-7,0.983965,0.00003927701,0.0068825255,0.00015675537],"about_ca_topic_score_codex":0.0000029206753,"about_ca_topic_score_gemma":0.0000011750631,"teacher_disagreement_score":0.011133436,"about_ca_system_score_codex":0.0000061394317,"about_ca_system_score_gemma":0.000009682168,"threshold_uncertainty_score":0.56819236},"labels":[],"label_agreement":null},{"id":"W1997108699","doi":"10.1128/aem.71.2.1035-1041.2005","title":"Utilization of Fluorescent Microspheres and a Green Fluorescent Protein-Marked Strain for Assessment of Microbiological Contamination of Permafrost and Ground Ice Core Samples from the Canadian High Arctic","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University; Biotechnology Research Institute","funders":"Victoria University of Wellington; University of Guelph; National Aeronautics and Space Administration","keywords":"Permafrost; Contamination; Drilling; Green fluorescent protein; Fluorescence; Ice core; Arctic; Environmental science; Drill; Materials science; Geology; Chemistry; Ecology; Biology; Optics; Metallurgy","score_opus":0.02177462184503185,"score_gpt":0.2376794419590261,"score_spread":0.21590482011399426,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1997108699","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950616,0.00025904624,0.0000774315,0.00023685778,0.000011953945,0.0008776924,0.003455363,0.0000022695115,0.000017781713],"genre_scores_gemma":[0.9963242,0.00016417887,0.0019999607,0.00011919047,0.000013681879,0.000038112285,0.0013199502,0.000008604204,0.000012145118],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99901354,0.00007011921,0.0002860279,0.0003057491,0.00004977661,0.00027479557],"domain_scores_gemma":[0.99947464,0.00015956946,0.00014886886,0.00012236711,0.0000044039934,0.000090122434],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023376767,0.000146438,0.00025726226,0.00002316079,0.00014287,0.000007934718,0.00012610131,0.0001415988,0.00036912865],"category_scores_gemma":[0.0000138224505,0.00011011171,0.000027449263,0.000033333687,0.0013816248,0.000039525854,0.00017451594,0.000097300974,0.0000013662874],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007342273,0.00008703722,0.111934744,0.000027186776,0.000031002113,2.5963422e-7,0.00022152539,0.000005604596,0.8778157,0.0003708057,0.000029597302,0.009403083],"study_design_scores_gemma":[0.0010933678,0.00029654338,0.9457121,0.000015723934,0.00003015916,0.000010245474,0.00045412002,0.00013326436,0.05045222,0.00040666494,0.0012698607,0.00012573811],"about_ca_topic_score_codex":0.03581265,"about_ca_topic_score_gemma":0.0881832,"teacher_disagreement_score":0.83377737,"about_ca_system_score_codex":0.0001544599,"about_ca_system_score_gemma":0.000019957448,"threshold_uncertainty_score":0.97060794},"labels":[],"label_agreement":null},{"id":"W1997827390","doi":"10.1128/aem.69.8.5001-5005.2003","title":"Characterization of<i>Anaplasma marginale</i>Isolated from North American Bison","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases; Canadian Food Inspection Agency; Oklahoma Agricultural Experiment Station; Oklahoma State University; Oklahoma Medical Research Foundation; Oklahoma Center for the Advancement of Science and Technology; National Institutes of Health; Noble Research Institute","keywords":"Anaplasmataceae; Bison bison; Biology; Rickettsiales; Infectivity; Anaplasmosis; Anaplasma; Serology; Pathogen; Feces; Veterinary medicine; Virology; Tick; Microbiology; Ecology; Antibody; Bacteria; Virus; Immunology","score_opus":0.0031537288438237667,"score_gpt":0.16102793536202534,"score_spread":0.15787420651820158,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1997827390","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99820316,0.0003229312,0.00012620381,0.000017145261,0.00016132025,0.00020273327,0.0007096385,0.00004020896,0.00021663669],"genre_scores_gemma":[0.9959026,0.00034158266,0.000041959265,0.00020757466,0.000011229243,0.000021439426,0.0033744886,0.000021511018,0.000077639255],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989692,0.00010930092,0.00025497656,0.0003749829,0.00001115918,0.00028038793],"domain_scores_gemma":[0.99952555,0.00005691209,0.00019098065,0.00019282449,0.000003437247,0.000030322857],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000036050347,0.00021394453,0.00034285785,0.000065976266,0.00009727922,0.0000046434434,0.00008853879,0.00012905027,0.00050040387],"category_scores_gemma":[0.0000046081855,0.00020645747,0.000049180802,0.000091369235,0.0006179258,0.000032483764,0.000054272834,0.00014103655,0.00024064814],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008535599,0.00015616743,0.1462937,0.000003846306,0.00014504632,0.0000012337398,0.00007826224,0.0000013646033,0.85102886,0.00011037735,0.00003767444,0.002058128],"study_design_scores_gemma":[0.0012386602,0.0002992001,0.46663228,0.000004325701,0.000102009435,0.00008341018,0.00015506113,9.774982e-7,0.5024022,0.000027011014,0.028731974,0.0003229328],"about_ca_topic_score_codex":0.000104030856,"about_ca_topic_score_gemma":0.000064917585,"teacher_disagreement_score":0.3486267,"about_ca_system_score_codex":0.000034313132,"about_ca_system_score_gemma":0.000011651386,"threshold_uncertainty_score":0.8419091},"labels":[],"label_agreement":null},{"id":"W1999419097","doi":"10.1128/aem.00254-14","title":"Long-Term Monitoring of Waterborne Pathogens and Microbial Source Tracking Markers in Paired Agricultural Watersheds under Controlled and Conventional Tile Drainage Management","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; Environment and Climate Change Canada; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Health Canada","keywords":"Arcobacter; Biology; Ruminant; Tile drainage; Veterinary medicine; Watershed; Ecology; Drainage; Bacteria; Pasture; Medicine; 16S ribosomal RNA; Genetics","score_opus":0.006727185076074758,"score_gpt":0.19968034803857873,"score_spread":0.19295316296250398,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1999419097","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989621,0.00019713372,0.000039945557,0.000116599374,0.0000351927,0.00047643637,0.000021804606,0.00000819275,0.0001425644],"genre_scores_gemma":[0.9989936,0.0003605186,0.00017168628,0.000063788706,0.00004092845,0.000039301598,0.00019775525,0.0000107297665,0.00012172452],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99911475,0.00005252969,0.00022770466,0.0002886851,0.00004396806,0.0002723518],"domain_scores_gemma":[0.999708,0.00006669927,0.000052274278,0.00007734934,0.0000026759158,0.00009298629],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017709876,0.00015526783,0.00035083469,0.00007123994,0.000052254763,0.000014063503,0.000035320685,0.00009324587,0.00004802483],"category_scores_gemma":[0.0000026406362,0.00011544715,0.00004023271,0.000023399482,0.00025464594,0.000028375724,0.000119267315,0.00009466674,0.0000031237862],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005295843,0.00009736504,0.20341481,0.000117854106,0.00008597411,0.000007955304,0.000121051504,0.0000012969645,0.79267085,0.000030770163,0.00001032864,0.002912164],"study_design_scores_gemma":[0.008841658,0.00017730387,0.95617795,0.00006902918,0.00007370759,0.00009161748,0.0006216906,0.0000068265012,0.033707146,0.000019446274,0.000084737934,0.00012891425],"about_ca_topic_score_codex":0.000008758282,"about_ca_topic_score_gemma":0.0000026233897,"teacher_disagreement_score":0.7589637,"about_ca_system_score_codex":0.00003753208,"about_ca_system_score_gemma":0.0000021718006,"threshold_uncertainty_score":0.4707798},"labels":[],"label_agreement":null},{"id":"W1999666084","doi":"10.1128/aem.00770-08","title":"Factors Associated with Cross-Contamination of Hides of Scottish Cattle by <i>Escherichia coli</i> O157","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; University of Guelph","funders":"Wellcome Trust","keywords":"Contamination; Odds ratio; Veterinary medicine; Biology; Animal science; Hay; Escherichia coli; Carriage; Medicine; Ecology; Internal medicine","score_opus":0.01510954580582521,"score_gpt":0.18476112617857432,"score_spread":0.1696515803727491,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1999666084","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99909806,0.00021090893,0.0000024650024,0.000022931377,0.000023794386,0.00011993401,0.00034460935,0.00001083937,0.00016645297],"genre_scores_gemma":[0.9987063,0.0001069626,0.000009969656,0.00011332281,0.000010769887,0.0000063041552,0.0009700333,0.0000014906414,0.000074871314],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992765,0.000047133246,0.00022972428,0.00022747846,0.000033407898,0.00018574187],"domain_scores_gemma":[0.9995359,0.00019136499,0.0001900862,0.000037667673,0.0000053420426,0.000039619303],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000077999764,0.00013474913,0.0003029748,0.000006650513,0.00008210161,0.0000023305436,0.00009530516,0.0001568236,0.00009758373],"category_scores_gemma":[0.0000073606598,0.000057589827,0.00003703354,0.000059294787,0.00066719967,0.000029280443,0.000044189037,0.000066820314,0.0000019908368],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015785216,0.00007234743,0.35355276,0.0000016619556,0.00001912527,1.707167e-7,0.00005163362,8.889775e-7,0.64584124,0.0000116830915,0.0001086942,0.0003239712],"study_design_scores_gemma":[0.0002318917,0.00022610955,0.7642693,0.0000036216281,0.000010524659,0.000003777075,0.0001605556,5.4164803e-7,0.23443578,0.000020525726,0.0005394948,0.00009787626],"about_ca_topic_score_codex":0.00009817489,"about_ca_topic_score_gemma":0.00003778241,"teacher_disagreement_score":0.41140547,"about_ca_system_score_codex":0.000018501492,"about_ca_system_score_gemma":0.00000275193,"threshold_uncertainty_score":0.24583249},"labels":[],"label_agreement":null},{"id":"W1999713011","doi":"10.1128/aem.71.11.7130-7138.2005","title":"Novel DNA Sequences from Natural Strains of the Nitrogen-Fixing Symbiotic Bacterium <i>Sinorhizobium meliloti</i>","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Genome Canada; Ontario Innovation Trust","keywords":"Sinorhizobium meliloti; Biology; Genome; Genetics; Strain (injury); Gene; Bacterial genome size; Bacteria; DNA sequencing; DNA; Nitrogen fixation; Microbiology","score_opus":0.005546674431932257,"score_gpt":0.15663536421640428,"score_spread":0.151088689784472,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1999713011","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977944,0.00038157476,2.7544235e-7,0.0006635426,0.00014350118,0.00019570293,0.0006124761,0.000025374195,0.00018317324],"genre_scores_gemma":[0.9983942,0.00002016753,0.0002592714,0.0008148095,0.00018709198,0.0000070449705,0.00028103398,0.0000027489593,0.000033656608],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988945,0.000040576848,0.00027062357,0.00039617502,0.00006849267,0.00032960903],"domain_scores_gemma":[0.9996018,0.000090333655,0.00014824589,0.00009866161,0.0000035439725,0.00005742161],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000075120435,0.00022185886,0.00024508295,0.000008378681,0.00018407092,0.000019900242,0.00033891544,0.00015295383,0.0002271064],"category_scores_gemma":[0.0000035717173,0.00008849332,0.000103352846,0.00007940238,0.00044407183,0.00006397511,0.00023781268,0.00017539627,0.000032988944],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011338408,0.0000835656,0.006413139,0.000002302758,0.000039310045,2.6948138e-7,0.00008590999,2.6597328e-7,0.99140584,0.00006120051,0.000041335268,0.0018555123],"study_design_scores_gemma":[0.000246975,0.000045512144,0.06650894,0.000008893886,0.000035825575,0.000029039707,0.00031494783,0.0000014774272,0.9315735,0.00011291957,0.0009190521,0.00020289989],"about_ca_topic_score_codex":0.00015395529,"about_ca_topic_score_gemma":0.00015872567,"teacher_disagreement_score":0.060095802,"about_ca_system_score_codex":0.000049670125,"about_ca_system_score_gemma":0.0000049729456,"threshold_uncertainty_score":0.36086527},"labels":[],"label_agreement":null},{"id":"W2000256640","doi":"10.1128/aem.00574-10","title":"Development of Amplified Fragment Length Polymorphism-Derived Functional Strain-Specific Markers To Assess the Persistence of 10 Bacterial Strains in Soil Microcosms","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Environment and Climate Change Canada","funders":"","keywords":"Biology; Microbiology; Strain (injury); Soil microbiology; Amplified fragment length polymorphism; Persistence (discontinuity); Escherichia coli; Microorganism; Microcosm; Population; Pseudomonas; DNA profiling; Bacteria; Genetics; DNA; Ecology; Gene; Genetic diversity","score_opus":0.019836630207714433,"score_gpt":0.1978386264570835,"score_spread":0.17800199624936908,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2000256640","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99837154,0.000010277976,0.00015865614,0.000088022556,0.00021592151,0.00034722965,0.00020235013,0.00000600565,0.0005999659],"genre_scores_gemma":[0.9962306,0.000019699077,0.0032691953,0.00010702036,0.000028147948,0.00003718463,0.0001778246,0.00001410774,0.000116220974],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988003,0.000030376437,0.00041831285,0.00039255322,0.00006553123,0.00029297022],"domain_scores_gemma":[0.9995225,0.000044578865,0.00014457207,0.00020966555,0.0000021408368,0.000076559765],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00017944128,0.00020510425,0.00023806737,0.00004806487,0.0001301421,0.000012701127,0.00022089024,0.00012603788,0.005731377],"category_scores_gemma":[0.0000017885612,0.00016895252,0.00005663692,0.0000723079,0.00060026726,0.00005154119,0.00028887313,0.00021455469,0.00008169382],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013150122,0.00018196309,0.00035649032,0.000004932035,0.000024930729,6.761027e-7,0.0009216611,0.00002728401,0.9889404,0.000033402303,0.0001493165,0.009227414],"study_design_scores_gemma":[0.0007416022,0.00007378263,0.33509067,0.000009863138,0.000012490293,0.000046828995,0.0022969765,0.0000022747245,0.6354454,0.000010461408,0.026019894,0.0002497338],"about_ca_topic_score_codex":0.00004407158,"about_ca_topic_score_gemma":0.0003292224,"teacher_disagreement_score":0.353495,"about_ca_system_score_codex":0.000098398035,"about_ca_system_score_gemma":0.000016649754,"threshold_uncertainty_score":0.9951775},"labels":[],"label_agreement":null},{"id":"W2000300812","doi":"10.1128/aem.07192-11","title":"Comparison of Gull Feces-Specific Assays Targeting the 16S rRNA Genes of Catellicoccus marimammalium and Streptococcus spp","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Environmental DNA in Biodiversity Studies","field":"Environmental Science","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Environment and Climate Change Canada","funders":"University of British Columbia","keywords":"Feces; Biology; TaqMan; 16S ribosomal RNA; Polymerase chain reaction; Microbiology; Bacteria; Gene; Genetics","score_opus":0.013656707374387516,"score_gpt":0.21153046807850745,"score_spread":0.19787376070411994,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2000300812","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940831,0.003991011,0.000023263648,0.00004599817,0.000083903644,0.0003498994,0.00012486402,0.000009462107,0.0012884776],"genre_scores_gemma":[0.9971729,0.0014940342,0.001086062,0.00006146197,0.00003048731,0.0000133334615,0.0000759428,0.0000132799405,0.000052510928],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987202,0.00006565022,0.0003617144,0.00035120867,0.00010050474,0.00040071088],"domain_scores_gemma":[0.9993363,0.00011279669,0.00024580283,0.0002227597,7.3453987e-7,0.00008159062],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002491437,0.00024902733,0.00037129445,0.000024847937,0.00023250018,0.000006301567,0.00021465875,0.00012798219,0.00070790993],"category_scores_gemma":[0.0000023815733,0.00019078443,0.00005294759,0.000053154818,0.0021341431,0.00007463894,0.00092406996,0.0001443923,0.00012743389],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013702857,0.00010667106,0.5042665,0.000007867596,0.000022874361,1.8624355e-7,0.0005163432,0.000016993066,0.49202764,0.000021697933,0.00060613884,0.0023933465],"study_design_scores_gemma":[0.0003789638,0.00009652533,0.67169535,0.0000040107398,0.00004909673,0.000009194715,0.0033625932,0.0000058651035,0.2997588,0.000025786312,0.02437586,0.00023796722],"about_ca_topic_score_codex":0.000083135084,"about_ca_topic_score_gemma":0.000005254193,"teacher_disagreement_score":0.19226886,"about_ca_system_score_codex":0.000080551654,"about_ca_system_score_gemma":7.6780486e-7,"threshold_uncertainty_score":0.7863339},"labels":[],"label_agreement":null},{"id":"W2001365893","doi":"10.1128/aem.00536-15","title":"Identity and Substrate Specificity of Reductive Dehalogenases Expressed in Dehalococcoides-Containing Enrichment Cultures Maintained on Different Chlorinated Ethenes","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Dehalococcoides; Enrichment culture; Chemistry; Geobacter; Substrate (aquarium); Reductive dechlorination; Vinyl chloride; Electron donor; Enzyme; Microbiology; Biochemistry; Biology; Bacteria; Genetics; Organic chemistry; Biodegradation; Catalysis","score_opus":0.01787724544336825,"score_gpt":0.22557936172023837,"score_spread":0.20770211627687013,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2001365893","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988874,0.00008038229,0.000010226573,0.000053670312,0.00005983851,0.0003251044,0.00009744681,0.000012422028,0.00047348236],"genre_scores_gemma":[0.9994177,0.00020364737,0.00009810254,0.00011294198,0.000015700121,0.000012214203,0.00010488502,0.000009407846,0.00002535838],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99884605,0.000071009905,0.0002916103,0.00044219237,0.00008172501,0.00026740067],"domain_scores_gemma":[0.999586,0.000041212184,0.00012971148,0.00012865594,0.0000019280444,0.00011249391],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019119549,0.00022589881,0.0002821459,0.00004795544,0.00005413438,0.000013539054,0.00011703352,0.00012735736,0.00014989109],"category_scores_gemma":[0.00000895363,0.00017930834,0.000026892982,0.00006814948,0.0005101606,0.00007704884,0.00020293289,0.00012495072,0.0000253736],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025225946,0.00021669352,0.06836307,0.000004795918,0.000013671954,0.0000046084506,0.0007793897,0.0000437202,0.92957294,0.0001903735,0.00004949997,0.00050897256],"study_design_scores_gemma":[0.0015290991,0.00031055603,0.31142652,0.000011831913,0.000013681079,0.000014671964,0.0024668234,0.000009829416,0.6829576,0.0006713886,0.00032643514,0.00026159137],"about_ca_topic_score_codex":0.0001685145,"about_ca_topic_score_gemma":0.00017363683,"teacher_disagreement_score":0.24661538,"about_ca_system_score_codex":0.00016832497,"about_ca_system_score_gemma":0.000004314676,"threshold_uncertainty_score":0.73119813},"labels":[],"label_agreement":null},{"id":"W2001807299","doi":"10.1128/aem.00172-10","title":"Subsurface Cycling of Nitrogen and Anaerobic Aromatic Hydrocarbon Biodegradation Revealed by Nucleic Acid and Metabolic Biomarkers","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of Environmental Health Sciences; National Science Foundation","keywords":"Environmental chemistry; Chemistry; Biodegradation; Nitrogen cycle; Nitrification; Nitrate; Methanogenesis; Denitrification; Anoxic waters; Methane; Nitrogen; Organic chemistry","score_opus":0.003388186954238462,"score_gpt":0.17316804699448932,"score_spread":0.16977986004025086,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2001807299","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987945,0.0005597494,0.000007665785,0.000068718495,0.00004527467,0.00023522462,0.000059408376,0.0000141497,0.00021530136],"genre_scores_gemma":[0.9980237,0.00050648034,0.0009727468,0.00020151943,0.00000681674,0.000009303197,0.0002519642,0.000014237895,0.000013236928],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902076,0.00009841321,0.00025244008,0.00035483617,0.000026198251,0.00024738532],"domain_scores_gemma":[0.9994918,0.00007978979,0.00013868752,0.00020708746,5.072903e-7,0.00008214382],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018000399,0.00020515121,0.0003213106,0.00003725069,0.00018892279,0.0000071530603,0.00013395319,0.00023729955,0.00029427663],"category_scores_gemma":[0.0000052757587,0.00019481442,0.000025599182,0.00006094009,0.0013187814,0.00006005928,0.00030509257,0.00024118388,0.000025171572],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033347413,0.000059711267,0.035666242,0.00000863759,0.000042131425,3.450554e-7,0.00017072295,0.0000011008535,0.9624222,0.000048216883,0.00012810418,0.0014192758],"study_design_scores_gemma":[0.0019889055,0.00028082036,0.21029769,0.000009760903,0.00017250926,0.00019928673,0.0005220382,0.00012241144,0.7779828,0.003966955,0.0037570181,0.0006998075],"about_ca_topic_score_codex":0.00013487063,"about_ca_topic_score_gemma":0.00012493695,"teacher_disagreement_score":0.18443936,"about_ca_system_score_codex":0.000013708067,"about_ca_system_score_gemma":0.0000024617582,"threshold_uncertainty_score":0.79443014},"labels":[],"label_agreement":null},{"id":"W2002090038","doi":"10.1128/aem.01573-14","title":"Two Novel Toxin Variants Revealed by Whole-Genome Sequencing of 175 Clostridium botulinum Type E Strains","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Botulinum Toxin and Related Neurological Disorders","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Canada; Public Health Agency of Canada","funders":"","keywords":"Clostridium botulinum; Bay; Toxin; Biology; Neurotoxin; Whole genome sequencing; Botulism; Clostridiaceae; Genome; Microbiology; Genetics; Gene; Geography","score_opus":0.009483938664741431,"score_gpt":0.20219525379991105,"score_spread":0.19271131513516962,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2002090038","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99596906,0.00033374433,0.00026260485,0.0004592934,0.00008310506,0.00029435146,0.00021905194,0.000027293367,0.0023514936],"genre_scores_gemma":[0.9962333,0.0003463102,0.0005941442,0.0018329147,0.000042785512,0.00000499804,0.0006167265,0.000022080081,0.00030672798],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99892735,0.000034132067,0.0002984215,0.00038803765,0.000045057885,0.00030697393],"domain_scores_gemma":[0.999549,0.00004344534,0.00010113839,0.00018941863,0.000003190123,0.00011385281],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000118128715,0.00019996753,0.00038332393,0.00003794605,0.00005881002,0.0000036268202,0.000085382664,0.0002673178,0.00017586598],"category_scores_gemma":[0.000009347164,0.00016105275,0.00005321096,0.00006652312,0.00037275584,0.000015976995,0.00008565627,0.0002924496,0.00006357346],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011120705,0.00017524685,0.0005025017,0.000021212203,0.00005726807,0.0000033274805,0.000058452024,0.000015346595,0.99811655,0.00016592411,0.00020952048,0.000563437],"study_design_scores_gemma":[0.050002113,0.009851055,0.09393252,0.00017416789,0.0012002435,0.0022866016,0.0023074427,0.0006871969,0.6764653,0.0021479826,0.15799242,0.0029529566],"about_ca_topic_score_codex":0.000008146475,"about_ca_topic_score_gemma":9.687168e-7,"teacher_disagreement_score":0.32165125,"about_ca_system_score_codex":0.000034943125,"about_ca_system_score_gemma":0.000013814085,"threshold_uncertainty_score":0.6567541},"labels":[],"label_agreement":null},{"id":"W2002110057","doi":"10.1128/aem.01682-13","title":"Impact of Manure Fertilization on the Abundance of Antibiotic-Resistant Bacteria and Frequency of Detection of Antibiotic Resistance Genes in Soil and on Vegetables at Harvest","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":453,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Manure; Bacteria; Antibiotic resistance; Biology; Antibiotics; Fertilizer; Biotechnology; Agronomy; Food science; Veterinary medicine; Microbiology; Medicine","score_opus":0.00860825209269922,"score_gpt":0.20905046419149464,"score_spread":0.20044221209879542,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2002110057","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99889433,0.0003492542,0.000004131346,0.00003806357,0.000014803859,0.00029576974,0.00010888517,0.0000025137788,0.00029223153],"genre_scores_gemma":[0.99918634,0.000646755,0.0000659207,0.000032952725,0.000003273752,0.0000012302943,0.00001793975,0.000011069029,0.000034493292],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99904764,0.000050362763,0.00033834705,0.0002928541,0.00007147585,0.00019934459],"domain_scores_gemma":[0.9994649,0.00008783761,0.00022153929,0.00016785898,0.0000011998995,0.000056657296],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010080876,0.0001848374,0.00030465453,0.000039660867,0.00005236494,0.0000057434695,0.000089745605,0.000100069774,0.00013682683],"category_scores_gemma":[0.000007034688,0.00012741554,0.00003533166,0.00006884524,0.0012995491,0.0000799856,0.00013871067,0.000079254976,0.000007130828],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011995236,0.0001859564,0.17665446,0.00006136051,0.000017908673,3.8273043e-7,0.0000892663,0.000046600442,0.8215904,0.00005337444,0.0000034529257,0.0011768716],"study_design_scores_gemma":[0.00027592038,0.00018968222,0.5188837,0.000041519845,0.0000097172215,0.0000029736102,0.00005517708,0.000018592122,0.48037076,0.000079669226,0.000005675554,0.00006660829],"about_ca_topic_score_codex":0.00020432427,"about_ca_topic_score_gemma":0.00009213706,"teacher_disagreement_score":0.34222925,"about_ca_system_score_codex":0.00007063952,"about_ca_system_score_gemma":0.000002344951,"threshold_uncertainty_score":0.51958543},"labels":[],"label_agreement":null},{"id":"W2002292857","doi":"10.1128/aem.03755-12","title":"<i>In Situ</i> Determination of Clostridium Endospore Membrane Fluidity during Pressure-Assisted Thermal Processing in Combination with Nisin or Reutericyclin","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Livestock and Meat Agency; Canada Research Chairs","keywords":"Nisin; Laurdan; Endospore; Membrane fluidity; Chemistry; Membrane; Clostridium; Chromatography; Microbiology; Biochemistry; Biology; Bacteria; Spore","score_opus":0.009380633258239767,"score_gpt":0.22630263608731557,"score_spread":0.2169220028290758,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2002292857","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99839455,0.0001930586,0.000008209469,0.00026880085,0.00001613844,0.00080619194,0.000018356925,0.000011943929,0.00028275987],"genre_scores_gemma":[0.99900776,0.0001791828,0.00028561853,0.00006725756,0.000026044172,0.000081310915,0.0001556427,0.000020875523,0.00017629915],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99879616,0.000047740967,0.0003866603,0.0003588584,0.00009837464,0.00031221219],"domain_scores_gemma":[0.99961257,0.000042947002,0.00011725805,0.00015531987,0.000009411596,0.00006251084],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000120306744,0.00018789525,0.0003770145,0.00015379231,0.00004716405,0.0000110367455,0.000073660434,0.00016571101,0.00015844307],"category_scores_gemma":[0.0000076188326,0.00014452034,0.000025825231,0.00015739392,0.00023403986,0.000095606185,0.00008045304,0.00023301889,0.00000846206],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00083665794,0.00054168556,0.005145945,0.00022775504,0.000010764205,0.000034823563,0.00020213859,0.0000037450086,0.98678213,0.0000028797367,0.000009933132,0.006201517],"study_design_scores_gemma":[0.00430971,0.00031493368,0.10267021,0.00007428139,0.000028373113,0.0001697928,0.00032616372,0.00006633624,0.8917968,0.0000046539876,0.00009704945,0.00014166639],"about_ca_topic_score_codex":0.00010541149,"about_ca_topic_score_gemma":0.000036404446,"teacher_disagreement_score":0.09752426,"about_ca_system_score_codex":0.000099391684,"about_ca_system_score_gemma":0.00003526643,"threshold_uncertainty_score":0.5893369},"labels":[],"label_agreement":null},{"id":"W2002819492","doi":"10.1128/aem.00118-08","title":"Morphology, Genome Sequence, and Structural Proteome of Type Phage P335 from <i>Lactococcus lactis</i>","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Mejeribrugets ForskningsFond","keywords":"Biology; Genetics; Prophage; Siphoviridae; Genome; Lactococcus lactis; Bacteriophage; Lysogenic cycle; Gene; Proteome; Comparative genomics; Genomics; Escherichia coli; Bacteria","score_opus":0.009775672174141322,"score_gpt":0.1982346414889621,"score_spread":0.18845896931482078,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2002819492","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982958,0.0001396422,0.000010482864,0.000038911643,0.00010433636,0.00031667884,0.00045758943,0.000015059103,0.00062153814],"genre_scores_gemma":[0.9981662,0.00028856285,0.00061804836,0.0002881963,0.00002904521,0.000015514683,0.00031701196,0.000015155233,0.00026223838],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99910307,0.000026160209,0.00021050317,0.00039014005,0.000028597367,0.00024152329],"domain_scores_gemma":[0.99963033,0.0000265279,0.000103613456,0.00016236828,9.719782e-7,0.00007615889],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000031481795,0.00018714913,0.00024166878,0.000023393755,0.00014745865,0.000005940591,0.00011150343,0.00013665979,0.0023253472],"category_scores_gemma":[0.0000014783211,0.00016698749,0.00002967288,0.0000471617,0.0010927257,0.00008965371,0.00027039307,0.00016069785,0.00014120025],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004656542,0.00003127093,0.0068874843,0.000002890885,0.000021743692,0.000010528825,0.00024408776,0.000008506984,0.99204165,0.0000062413874,0.00010677247,0.0005922312],"study_design_scores_gemma":[0.0014418231,0.00032843702,0.7003722,0.00000690431,0.000059625214,0.0014242671,0.00025554124,0.000022802094,0.26701915,0.00023165901,0.028250497,0.0005870543],"about_ca_topic_score_codex":0.00043659305,"about_ca_topic_score_gemma":0.000018334884,"teacher_disagreement_score":0.7250225,"about_ca_system_score_codex":0.000056615663,"about_ca_system_score_gemma":0.0000039337597,"threshold_uncertainty_score":0.99858665},"labels":[],"label_agreement":null},{"id":"W2002884340","doi":"10.1128/aem.01987-10","title":"Analyses of both the <i>alkB</i> Gene Transcriptional Start Site and <i>alkB</i> Promoter-Inducing Properties of <i>Rhodococcus</i> sp. Strain BCP1 Grown on <i>n</i> -Alkanes","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"AlkB; Strain (injury); Gene; Biology; Genetics; Rhodococcus; Promoter; Bacteria; Rhodococcus equi; Computational biology; Microbiology; Gene expression; Escherichia coli; Virulence","score_opus":0.01004898936783174,"score_gpt":0.1919773020062371,"score_spread":0.18192831263840537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2002884340","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99808145,0.0010598825,0.00004838421,0.00009489749,0.00011781319,0.00026127932,0.00028815353,0.000006986241,0.000041150342],"genre_scores_gemma":[0.9983501,0.0005247522,0.00041099335,0.00019978991,0.00015130902,0.000015562175,0.00027748517,0.000018064418,0.00005193886],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99905825,0.000042974465,0.00026960878,0.00038354262,0.000048598362,0.00019702701],"domain_scores_gemma":[0.999594,0.0000068830745,0.00010722491,0.00024284767,0.0000067144483,0.000042340198],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002158302,0.0002109556,0.00024461982,0.000035838435,0.00009384983,0.000008442875,0.00010602002,0.00016346092,0.000012490638],"category_scores_gemma":[0.0000057627963,0.00014641779,0.000060543895,0.000039845898,0.00053548295,0.0000050713134,0.00006715325,0.00018725093,0.0000013911142],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009385154,0.000095518495,0.00028021113,0.000044586435,0.00006478664,2.518716e-7,0.00013907906,0.000035522484,0.9977781,0.000042888718,0.000054836226,0.0013703771],"study_design_scores_gemma":[0.00044383178,0.0001884324,0.0019199088,0.000011048823,0.00005042653,0.00006647117,0.0000847479,0.0000026996845,0.988965,0.000013565947,0.008091025,0.00016286262],"about_ca_topic_score_codex":0.00004177289,"about_ca_topic_score_gemma":0.000016229495,"teacher_disagreement_score":0.008813111,"about_ca_system_score_codex":0.0000040686205,"about_ca_system_score_gemma":0.00001268573,"threshold_uncertainty_score":0.59707445},"labels":[],"label_agreement":null},{"id":"W2003016820","doi":"10.1128/aem.04168-13","title":"New Skin Test for Detection of Bovine Tuberculosis on the Basis of Antigen-Displaying Polyester Inclusions Produced by Recombinant Escherichia coli","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Massey University; Public Health Agency of Canada; AgResearch","keywords":"Antigen; Escherichia coli; Microbiology; Mycobacterium tuberculosis; Mycobacterium bovis; Immunogenicity; Mycobacterium; Recombinant DNA; Paratuberculosis; Chemistry; Antibody; Biology; Tuberculosis; Molecular biology; Bacteria; Immunology; Biochemistry; Medicine","score_opus":0.008275280005981805,"score_gpt":0.22982673111258747,"score_spread":0.22155145110660568,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003016820","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959264,0.00015620659,0.00034840024,0.0026694636,0.0000477694,0.00065549574,0.00007938165,0.0000072108005,0.000109719535],"genre_scores_gemma":[0.9980307,0.00035204669,0.0003489368,0.00096593244,0.000046383368,0.00005259789,0.00010880403,0.000018151743,0.00007645213],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99899364,0.00007558433,0.00030923806,0.00030359052,0.00004253661,0.00027540085],"domain_scores_gemma":[0.9988954,0.00065691845,0.00011848027,0.00023374594,0.0000053335757,0.000090111775],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003542059,0.00015127411,0.000386797,0.00005438093,0.000121923695,0.0000021381104,0.00008071664,0.00014529847,0.00006280331],"category_scores_gemma":[0.000150711,0.00009932036,0.00007532147,0.000061688304,0.00022440244,0.000013345357,0.00011076416,0.00014892321,0.000007898996],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031419832,0.00021207915,0.009427881,0.00003612911,0.000066521956,1.00549194e-7,0.00006489543,8.237438e-7,0.979545,0.000086704946,0.0019246052,0.00832107],"study_design_scores_gemma":[0.0010277679,0.0015843934,0.03970098,0.000025826468,0.00005313339,0.000013103072,0.000105776155,0.000069979265,0.9503426,0.00006249619,0.006909828,0.00010411292],"about_ca_topic_score_codex":0.00013663262,"about_ca_topic_score_gemma":0.000010937874,"teacher_disagreement_score":0.0302731,"about_ca_system_score_codex":0.00003840138,"about_ca_system_score_gemma":0.000012662114,"threshold_uncertainty_score":0.40501666},"labels":[],"label_agreement":null},{"id":"W2003579552","doi":"10.1128/aem.03949-13","title":"Occurrence of Diarrheagenic Virulence Genes and Genetic Diversity in <i>Escherichia coli</i> Isolates from Fecal Material of Various Avian Hosts in British Columbia, Canada","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Victoria","funders":"","keywords":"Biology; Virulence; Microbiology; Escherichia coli; Feces; Shiga toxin; Genotype; Polymerase chain reaction; Serotype; Virology; Gene; Genetics","score_opus":0.003000385104615008,"score_gpt":0.16426117412085373,"score_spread":0.16126078901623872,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003579552","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99782765,0.001095981,0.000008559469,0.0000073173846,0.0000391644,0.00016466533,0.00084365805,0.0000011987869,0.000011798798],"genre_scores_gemma":[0.99784386,0.0017102818,0.00016096594,0.000074362084,0.000012877171,0.000011837986,0.00017645737,0.0000046925948,0.0000046337555],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999174,0.0000693279,0.00019403388,0.0003192366,0.000033550565,0.0002098378],"domain_scores_gemma":[0.99974775,0.000030518244,0.00006509784,0.000108827444,0.0000032262483,0.000044561017],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006577654,0.000096479875,0.00024089347,0.000012179879,0.000052404484,0.000007769495,0.00011981138,0.00010883007,0.00001624289],"category_scores_gemma":[0.00000825935,0.00013774449,0.000014724697,0.00003228319,0.00039709156,0.0000023475436,0.00057220465,0.000072388146,2.6631767e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024749615,0.000033095446,0.37865517,0.000014570705,0.00001287531,0.0000020404036,0.000031087897,0.0000030342262,0.6202823,2.1910616e-7,0.000024003577,0.0009168596],"study_design_scores_gemma":[0.00082412246,0.00016357476,0.9125836,0.000013342,0.000010616254,0.0000076304495,0.00012090652,0.000013145607,0.08567931,0.00002296556,0.0003869243,0.00017386873],"about_ca_topic_score_codex":0.37185332,"about_ca_topic_score_gemma":0.70537084,"teacher_disagreement_score":0.534603,"about_ca_system_score_codex":0.000022215412,"about_ca_system_score_gemma":0.000032346175,"threshold_uncertainty_score":0.6323295},"labels":[],"label_agreement":null},{"id":"W2003910814","doi":"10.1128/aem.07994-11","title":"Community Structure Analysis of Methanogens Associated with Rumen Protozoa Reveals Bias in Universal Archaeal Primers","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Rumen; Archaea; Protozoa; Ribosomal RNA; Euryarchaeota; Primer (cosmetics); Microbiology; Metagenomics; Methanogen; Bacteria; Genetics; Gene; Biochemistry","score_opus":0.020694034228115086,"score_gpt":0.20215774545003867,"score_spread":0.1814637112219236,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003910814","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99902314,0.000052350155,7.50501e-7,0.000051618623,0.000010245758,0.00025338447,0.0004784629,0.000007409273,0.00012264955],"genre_scores_gemma":[0.9984351,0.000018610239,0.00005217421,0.0001000637,0.000009862018,0.000010503418,0.0013574995,9.3671343e-7,0.000015259206],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991904,0.00023614882,0.00014919613,0.0001432087,0.000029739555,0.0002512925],"domain_scores_gemma":[0.9996216,0.00016238651,0.00011063575,0.000045374323,0.0000029145979,0.00005704615],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016515008,0.00012081889,0.00031338562,0.00003983895,0.00008367409,0.0000022273027,0.00009362153,0.000118317665,0.00017307853],"category_scores_gemma":[0.000005173033,0.000053058488,0.00004106323,0.00023960708,0.0003638331,0.000032803375,0.00008805676,0.00015088521,0.0000014218413],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058974747,0.00018360124,0.20564999,0.0000018853964,0.00011909769,2.6435183e-7,0.00021605944,0.0000039546353,0.7928612,0.000080507954,0.000006104212,0.00081834494],"study_design_scores_gemma":[0.0002880385,0.00021119085,0.96870875,0.0000039130005,0.00009199434,0.0000031272357,0.0013361877,0.0000015903349,0.02887796,0.000104097286,0.00025748208,0.0001156562],"about_ca_topic_score_codex":0.00018681747,"about_ca_topic_score_gemma":0.00030605504,"teacher_disagreement_score":0.76398325,"about_ca_system_score_codex":0.00003668573,"about_ca_system_score_gemma":0.0000017409288,"threshold_uncertainty_score":0.21636623},"labels":[],"label_agreement":null},{"id":"W2004022381","doi":"10.1128/aem.00594-07","title":"Mycorrhizal and Rhizobial Colonization of Genetically Modified and Conventional Soybeans","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; University of Guelph","keywords":"Colonization; Bradyrhizobium japonicum; Biology; Genetically modified organism; Genetically modified crops; Symbiosis; Bradyrhizobium; Inoculation; Botany; Rhizobium; Arbuscular mycorrhizal; Abundance (ecology); Rhizobiaceae; Mycorrhiza; Agronomy; Bacteria; Horticulture; Microbiology; Transgene; Gene; Genetics; Ecology","score_opus":0.004963987572574797,"score_gpt":0.1662084567504169,"score_spread":0.1612444691778421,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2004022381","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99925905,0.00019083079,0.000022008278,0.00007945294,0.000025346984,0.00012429715,0.00011161646,0.000008717642,0.00017867095],"genre_scores_gemma":[0.99919873,0.00006337328,0.00025796404,0.00015069448,0.000038776732,0.0000027226254,0.00026675354,0.0000010316624,0.00001997086],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99944025,0.000014733623,0.00015139171,0.00021266377,0.000028101547,0.0001528551],"domain_scores_gemma":[0.99978656,0.000086609885,0.00004972754,0.000020697333,0.0000025332781,0.000053883457],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010331736,0.000090507376,0.00012180366,0.000008776454,0.00007884611,0.0000066680636,0.000040863688,0.00011312603,0.00007808928],"category_scores_gemma":[0.000002682437,0.00004644417,0.000016060596,0.00002961647,0.0002903968,0.000016576156,0.00008440707,0.000048673974,0.0000034745858],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042773347,0.000039176906,0.023468412,0.0000033324347,0.000010970804,5.4842707e-7,0.000034450626,8.936719e-8,0.9710176,0.0011705437,0.0000138963105,0.0041982294],"study_design_scores_gemma":[0.00067957595,0.00032131135,0.63810027,0.0000047793,0.00003488985,0.00010260482,0.00029064188,0.000013643094,0.35866472,0.00083651394,0.00071747473,0.00023357208],"about_ca_topic_score_codex":0.000019348648,"about_ca_topic_score_gemma":0.00001547815,"teacher_disagreement_score":0.61463183,"about_ca_system_score_codex":0.000009017953,"about_ca_system_score_gemma":0.000001311201,"threshold_uncertainty_score":0.18939382},"labels":[],"label_agreement":null},{"id":"W2004326479","doi":"10.1128/aem.02447-08","title":"Physicochemical Basis for the Inhibitory Effects of Organic and Inorganic Salts on the Growth of <i>Pectobacterium carotovorum</i> subsp. <i>carotovorum</i> and <i>Pectobacterium atrosepticum</i>","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Pectobacterium carotovorum; Microbiology; Chemistry; Pectobacterium; Minimum inhibitory concentration; Biology; Antibiotics; Pathogen","score_opus":0.004916088376277982,"score_gpt":0.14895271950253208,"score_spread":0.1440366311262541,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2004326479","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979513,0.0005013815,0.0000026397136,0.00041034818,0.000059233047,0.00085558806,0.00017556739,0.000011287611,0.000032627137],"genre_scores_gemma":[0.9980612,0.0010467336,0.000019341353,0.0006526172,0.00007945536,0.000061762425,0.000063624655,0.000004952871,0.000010326633],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99901474,0.000046975987,0.00024347531,0.00035712286,0.000053863754,0.00028379966],"domain_scores_gemma":[0.9990206,0.0006662672,0.00014374702,0.000101519865,0.0000076041338,0.00006026293],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000100205434,0.0002359544,0.00032411198,0.000009659849,0.00024602213,0.000009799807,0.00016546011,0.00015080783,0.000015787064],"category_scores_gemma":[0.0000122221945,0.00009036947,0.00007001372,0.00007898997,0.00090681046,0.000025991096,0.00022654243,0.00015469146,0.0000017048075],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000840322,0.0001126482,0.0060974946,0.00003930281,0.00004978473,4.537635e-7,0.00016324496,4.666637e-8,0.9928307,0.0001294235,0.00012602602,0.00036684587],"study_design_scores_gemma":[0.00046689578,0.0005869635,0.07442697,0.000020795713,0.000055167926,0.000043276505,0.00020782425,0.0000013421414,0.9235071,0.000089851084,0.00042564402,0.00016814959],"about_ca_topic_score_codex":0.000023716762,"about_ca_topic_score_gemma":0.000013806135,"teacher_disagreement_score":0.06932358,"about_ca_system_score_codex":0.000018941519,"about_ca_system_score_gemma":0.000004854342,"threshold_uncertainty_score":0.368516},"labels":[],"label_agreement":null},{"id":"W2004750687","doi":"10.1128/aem.03112-12","title":"Isolation of a Substantial Proportion of Forest Soil Bacterial Communities Detected via Pyrotag Sequencing","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Genome Canada","keywords":"Isolation (microbiology); Biology; Soil microbiology; Microbiology; Ecology; Soil water","score_opus":0.006404210493890329,"score_gpt":0.16668133710253352,"score_spread":0.16027712660864318,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2004750687","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99885654,0.00001398738,0.0003038706,0.00001243305,0.000056608445,0.00032596424,0.00003276626,0.000011062516,0.0003867469],"genre_scores_gemma":[0.9988286,0.000033760607,0.00047207595,0.00006296122,0.0000139953845,0.000017494898,0.0005465194,0.000010161368,0.000014421785],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99917984,0.00011838562,0.00032620266,0.00014308801,0.000029600056,0.00020290223],"domain_scores_gemma":[0.9994893,0.00005994151,0.00021751314,0.00019856241,0.000002763319,0.000031919626],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000106620784,0.00014250996,0.00025162566,0.000033561162,0.000119940785,0.0000033090594,0.0001555029,0.00018584996,0.0040488928],"category_scores_gemma":[0.0000019171819,0.00013429068,0.000036532438,0.000045675948,0.0011094721,0.000082344464,0.0002681094,0.00015557838,0.00007337108],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006861903,0.00006787654,0.022972155,0.000012656373,0.00001832659,1.3580576e-7,0.00059885514,0.00014044624,0.97545236,0.000035557056,0.000046385416,0.0005866387],"study_design_scores_gemma":[0.0015079541,0.0007284426,0.3368418,0.000015120224,0.000055766137,0.00005870085,0.001945414,0.0005460847,0.6550098,0.002398639,0.00045341277,0.00043887363],"about_ca_topic_score_codex":0.0012336059,"about_ca_topic_score_gemma":0.0010193931,"teacher_disagreement_score":0.32044256,"about_ca_system_score_codex":0.000058285546,"about_ca_system_score_gemma":0.00000568143,"threshold_uncertainty_score":0.9968615},"labels":[],"label_agreement":null},{"id":"W2005186769","doi":"10.1128/aem.00418-14","title":"Impact of UV and Peracetic Acid Disinfection on the Prevalence of Virulence and Antimicrobial Resistance Genes in Uropathogenic Escherichia coli in Wastewater Effluents","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Université Paris-Est Créteil Val-de-Marne","keywords":"Peracetic acid; Escherichia coli; Antimicrobial; Microbiology; Virulence; Wastewater; Effluent; Biology; Antibiotic resistance; Bacteria; Food science; Gene; Antibiotics; Hydrogen peroxide; Environmental engineering; Biochemistry","score_opus":0.00394587745590466,"score_gpt":0.20739028411548988,"score_spread":0.20344440665958521,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005186769","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986482,0.001022691,0.0000059991385,0.000022624421,0.000009861671,0.00022020863,0.00004108592,0.0000010119692,0.000028265431],"genre_scores_gemma":[0.9965044,0.0033398562,0.000060379472,0.00002904812,0.000009104533,0.00001757175,0.000011071553,0.000007775765,0.000020793239],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99926335,0.00011063976,0.0001586205,0.00027430523,0.000026187776,0.00016689494],"domain_scores_gemma":[0.99974823,0.000032585354,0.00006127475,0.00013281062,0.0000027459841,0.000022340819],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018097313,0.00012417321,0.0001650691,0.000030297198,0.000036916077,0.0000038675225,0.000068249465,0.00007854485,0.0000043196837],"category_scores_gemma":[0.000015794461,0.00008877599,0.000021836455,0.000035768255,0.00049914455,0.0000030269007,0.000174945,0.00008066617,5.1921364e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001651028,0.00006128368,0.15647638,0.0000759851,0.000014195248,2.2802217e-7,0.00007793874,0.000009755053,0.8428888,0.000011548651,0.0000028431741,0.00021599102],"study_design_scores_gemma":[0.00045677807,0.00024286196,0.58545285,0.000022815853,0.000006304794,0.0000038219605,0.000029002938,0.000009123732,0.4136589,0.00001095973,0.00003337185,0.00007322999],"about_ca_topic_score_codex":0.000018735907,"about_ca_topic_score_gemma":0.000027327931,"teacher_disagreement_score":0.42922986,"about_ca_system_score_codex":0.000014570862,"about_ca_system_score_gemma":0.000006757563,"threshold_uncertainty_score":0.36201796},"labels":[],"label_agreement":null},{"id":"W2005196978","doi":"10.1128/aem.03947-12","title":"Bioengineering of Bacterial Polymer Inclusions Catalyzing the Synthesis of <i>N</i> -Acetylneuraminic Acid","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Public Health Agency of Canada","keywords":"Aldolase A; Chemistry; Enzyme; Escherichia coli; Substrate (aquarium); Epimer; N-Acetylneuraminic acid; Biochemistry; Stereochemistry; Sialic acid; Biology","score_opus":0.003801902798865951,"score_gpt":0.18175393109585272,"score_spread":0.17795202829698678,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005196978","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989078,0.00046681572,0.000057746944,0.00007687665,0.000028596614,0.00018995306,0.00006720643,0.000002348575,0.00020268072],"genre_scores_gemma":[0.9993896,0.00019669242,0.00009722536,0.000045338118,0.000028482169,0.00004028016,0.0001448892,0.0000098196815,0.00004769572],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99949056,0.000023384888,0.00016037401,0.0001563586,0.000027566013,0.00014175868],"domain_scores_gemma":[0.99971145,0.000020576957,0.000055633034,0.00017805849,0.0000032494545,0.000031005853],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000061413426,0.000090507536,0.000120333156,0.000024214476,0.000055348522,0.000003872327,0.0001184183,0.00009089602,0.00015642538],"category_scores_gemma":[0.000007775812,0.00006604784,0.00003579618,0.000027955963,0.00027796178,0.0000022220772,0.0002695318,0.000052307125,0.000010770095],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001894704,0.000027100428,0.00025676526,0.000009588242,0.000025449548,7.958619e-8,0.00003538447,0.0000034476877,0.9958193,0.000023873368,0.000072414776,0.0037076916],"study_design_scores_gemma":[0.00018525706,0.00005487853,0.0014133827,0.000003064796,0.0000070777573,0.000012987817,0.0001555199,0.0000066663883,0.99592423,0.00000439367,0.0021648258,0.00006769083],"about_ca_topic_score_codex":0.000029464325,"about_ca_topic_score_gemma":0.0000027404112,"teacher_disagreement_score":0.003640001,"about_ca_system_score_codex":0.000004635381,"about_ca_system_score_gemma":0.0000073254832,"threshold_uncertainty_score":0.26933527},"labels":[],"label_agreement":null},{"id":"W2005447139","doi":"10.1128/aem.68.8.4044-4060.2002","title":"Ability of Nonpathogenic <i>Fusarium oxysporum</i> Strain Fo47 To Induce Resistance against <i>Pythium ultimum</i> Infection in Cucumber","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":134,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Pythium ultimum; Biology; Fusarium oxysporum; Hypha; Rhizosphere; Pathogen; Microbiology; Pythium; Protoplasm; Cell wall; Botany; Cytoplasm; Root rot; Pythium aphanidermatum; Xylem; Bacteria; Biological pest control; Biochemistry","score_opus":0.008906443825188685,"score_gpt":0.17634816910918985,"score_spread":0.16744172528400117,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005447139","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969851,0.000121183,0.0000026246262,0.0002185437,0.00007631453,0.00025432248,0.00069716625,0.0000146569,0.0016301222],"genre_scores_gemma":[0.99849737,0.00031787937,0.00008472364,0.0005461249,0.000029454352,0.00002147231,0.000359341,0.0000016715409,0.00014196479],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989852,0.00006721386,0.00030240932,0.0003381792,0.000034171928,0.0002728839],"domain_scores_gemma":[0.9996711,0.000086288645,0.000090185444,0.00008740204,0.0000041908106,0.00006080867],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015176386,0.00016459261,0.0002296864,0.000021819482,0.00010108786,0.000010532675,0.00011449676,0.00015939536,0.00023718733],"category_scores_gemma":[0.0000064882693,0.00009002821,0.000044458237,0.00013487028,0.0001445682,0.000060639235,0.00010717804,0.00021285213,0.0000548046],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003659362,0.00023035845,0.012216165,0.000005745961,0.000007182752,0.0000012842361,0.00009822624,0.0000065137383,0.9787567,0.000010665532,0.00031837364,0.00831214],"study_design_scores_gemma":[0.0008296012,0.00032236977,0.6105668,0.000036013535,0.000018811326,0.00005183152,0.00048562925,0.000016994018,0.26910394,0.00009982177,0.11786256,0.00060562656],"about_ca_topic_score_codex":0.0003070882,"about_ca_topic_score_gemma":0.0013514225,"teacher_disagreement_score":0.7096528,"about_ca_system_score_codex":0.000060768365,"about_ca_system_score_gemma":0.0000016595328,"threshold_uncertainty_score":0.3671244},"labels":[],"label_agreement":null},{"id":"W2005590263","doi":"10.1128/aem.66.5.1928-1932.2000","title":"Antimicrobial Peptides Protect Coho Salmon from <i>Vibrio anguillarum</i> Infections","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":119,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Fisheries and Oceans Canada; University of British Columbia","funders":"","keywords":"Vibrio anguillarum; Antimicrobial peptides; Antimicrobial; Biology; Microbiology; Vibrio; Pathogen; Population; Bacteria; Medicine","score_opus":0.0037413125185512233,"score_gpt":0.1643742421586823,"score_spread":0.16063292964013107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005590263","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99333704,0.000993784,0.000032222157,0.00015676796,0.00023540211,0.00047262374,0.00093831285,0.00012968172,0.0037041595],"genre_scores_gemma":[0.9934131,0.00073167606,0.0002122965,0.0010126253,0.00010624503,0.00003896582,0.0018666831,0.00004438378,0.0025740543],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982755,0.00009612334,0.0003518577,0.0006720611,0.000017140197,0.0005873077],"domain_scores_gemma":[0.9994629,0.000088498266,0.000103661485,0.00029608584,0.000003431104,0.000045392495],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00008115909,0.00040843856,0.00048110963,0.0000711016,0.00048049953,0.00003529777,0.00018780651,0.00045868347,0.0034772474],"category_scores_gemma":[0.000003022693,0.00038302492,0.00012363076,0.00006543604,0.0010297733,0.00009982353,0.00015329188,0.00040422933,0.0019396411],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012614207,0.00022877393,0.0026499876,0.000008057199,0.0001558607,0.000004513187,0.00021066343,0.000013679318,0.9789675,0.00005608196,0.006500405,0.0110783605],"study_design_scores_gemma":[0.002549996,0.0002742853,0.009788983,0.00003848747,0.00013119225,0.00065139885,0.00034982397,0.0000017567362,0.6862393,0.00024155111,0.2988267,0.0009065222],"about_ca_topic_score_codex":0.0005799743,"about_ca_topic_score_gemma":0.00004344178,"teacher_disagreement_score":0.29272816,"about_ca_system_score_codex":0.000054113567,"about_ca_system_score_gemma":0.000017289722,"threshold_uncertainty_score":0.9998622},"labels":[],"label_agreement":null},{"id":"W2005885786","doi":"10.1128/aem.01771-08","title":"Metabolomic Investigation of the Bacterial Response to a Metal Challenge","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Arsenic contamination and mitigation","field":"Environmental Science","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"The Metabolomics Innovation Centre; University of Calgary","funders":"","keywords":"Metabolomics; Glutathione; Betaine; Biology; Biochemistry; Oxidative stress; Metabolic pathway; Metabolism; Chemistry; Microbiology; Enzyme; Bioinformatics","score_opus":0.006924084422907789,"score_gpt":0.1671909496347663,"score_spread":0.1602668652118585,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005885786","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987114,0.000017252452,0.000023016592,0.0004399518,0.00007210762,0.0002393269,0.000025148805,0.0000075616126,0.00046423145],"genre_scores_gemma":[0.99904346,0.000026709224,0.00024829057,0.00035435052,0.000012818714,0.000019538536,0.00002433989,0.0000063493917,0.0002641291],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99940044,0.00008000459,0.00015434719,0.00020240799,0.000045561115,0.000117269694],"domain_scores_gemma":[0.99972016,0.000032420765,0.000065113156,0.00013399479,5.5460737e-7,0.00004776307],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001362672,0.00009153753,0.00011412407,0.000018508215,0.00011398185,0.0000015305542,0.00009830752,0.00006126788,0.0005107889],"category_scores_gemma":[0.0000064861006,0.000069594076,0.000030600473,0.000050516453,0.00048774117,0.00003511407,0.0002083171,0.00005360042,0.000104045284],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000855263,0.000017103519,0.0023302792,7.2931687e-7,0.00000608552,2.9826788e-7,0.0011307566,0.0000056000404,0.99459404,0.000066819404,0.00012488154,0.0016378943],"study_design_scores_gemma":[0.0006688147,0.000094043775,0.5978057,0.0000021771648,0.000018725372,0.000055390374,0.00025790662,0.0000065479576,0.3779708,0.0001232197,0.022847697,0.00014900541],"about_ca_topic_score_codex":0.000017051201,"about_ca_topic_score_gemma":0.000012803006,"teacher_disagreement_score":0.6166232,"about_ca_system_score_codex":0.00005125218,"about_ca_system_score_gemma":0.000005357974,"threshold_uncertainty_score":0.559278},"labels":[],"label_agreement":null},{"id":"W2007462374","doi":"10.1128/aem.03137-09","title":"Exopolysaccharide Synthesized by<i>Lactobacillus reuteri</i>Decreases the Ability of Enterotoxigenic<i>Escherichia coli</i>To Bind to Porcine Erythrocytes","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Alberta Crop Industry Development Fund","keywords":"Lactobacillus reuteri; Enterotoxigenic Escherichia coli; Microbiology; Escherichia coli; Hemagglutination; Lactobacillus; Polysaccharide; Biology; Escherichia; Chemistry; Bacteria; Biochemistry; Enterotoxin; Antigen; Immunology","score_opus":0.004369825546760604,"score_gpt":0.1711244191936226,"score_spread":0.166754593646862,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2007462374","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973297,0.00010173113,0.0000086495,0.0010720019,0.00009394129,0.00067793095,0.0005979359,0.000019906252,0.000098208606],"genre_scores_gemma":[0.9977472,0.00008503177,0.00021064932,0.0016767038,0.000052666208,0.00005803102,0.00013708255,0.0000027664555,0.00002989275],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99884856,0.0000400541,0.000290542,0.0004350675,0.000054597607,0.00033120625],"domain_scores_gemma":[0.9994461,0.00014088584,0.00008964805,0.00015088703,0.0000047564445,0.00016775614],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018321883,0.0002205281,0.00029147224,0.000011053245,0.000168742,0.000021295195,0.00031752716,0.00014543286,0.00035394603],"category_scores_gemma":[0.0000137192155,0.000088497385,0.000066474,0.00010100606,0.00031284243,0.000023642458,0.00028525892,0.00016774866,0.00003624846],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013800817,0.000166238,0.001497737,0.0000036197357,0.000023817192,4.0288973e-7,0.000073017254,4.680618e-7,0.9930981,0.000049611102,0.00035406614,0.004594939],"study_design_scores_gemma":[0.00025307483,0.00039890374,0.03612313,0.0000057399143,0.000022546936,0.000013290125,0.00029437628,0.0000014922815,0.9279305,0.000073080206,0.03465531,0.00022856536],"about_ca_topic_score_codex":0.000112254726,"about_ca_topic_score_gemma":0.000089050256,"teacher_disagreement_score":0.06516758,"about_ca_system_score_codex":0.00001829333,"about_ca_system_score_gemma":0.0000037262266,"threshold_uncertainty_score":0.38754606},"labels":[],"label_agreement":null},{"id":"W2007733050","doi":"10.1128/aem.00294-13","title":"Virulence Profiling of Shiga Toxin-Producing Escherichia coli O111:NM Isolates from Cattle","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Virulence; Escherichia coli; Serotype; Microbiology; Shiga toxin; Biology; Outbreak; Enterobacteriaceae; Virulence factor; Toxin; Shiga-like toxin; Virology; Gene; Genetics","score_opus":0.005467338641839291,"score_gpt":0.19818363661319807,"score_spread":0.19271629797135878,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2007733050","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99733824,0.0016227257,0.000091823866,0.00007065378,0.000048669594,0.00034656166,0.00008680655,0.000008198815,0.00038633868],"genre_scores_gemma":[0.9955923,0.0007179995,0.0028521928,0.00024955452,0.00007963469,0.00008746811,0.00027736207,0.000019971416,0.00012352825],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989423,0.000037578517,0.0002072004,0.00047609655,0.00003435462,0.00030242818],"domain_scores_gemma":[0.999562,0.000029596056,0.000081808255,0.00025651767,0.00000719326,0.000062885476],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008129371,0.00018274909,0.00021955305,0.000019945333,0.00009305396,0.00001069342,0.00016095488,0.0001439118,0.00007940384],"category_scores_gemma":[0.000015759937,0.00016556367,0.000038555427,0.000035763678,0.00042567487,0.0000050113013,0.00041465188,0.000120903525,0.00003573115],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029402994,0.000060555296,0.00913366,0.000014809133,0.000074475654,2.1853222e-7,0.0001066378,0.000009499002,0.98961574,0.000020268213,0.00026953287,0.0006651763],"study_design_scores_gemma":[0.00036757154,0.00014962844,0.019885244,0.000006521693,0.000013411614,0.000002796466,0.0005256246,0.000017600503,0.977146,0.00009726415,0.0015944925,0.00019380759],"about_ca_topic_score_codex":0.0001830053,"about_ca_topic_score_gemma":0.000013110913,"teacher_disagreement_score":0.012469728,"about_ca_system_score_codex":0.000015744456,"about_ca_system_score_gemma":0.000015007261,"threshold_uncertainty_score":0.675149},"labels":[],"label_agreement":null},{"id":"W2008022620","doi":"10.1128/aem.01924-12","title":"Spatiotemporal Analysis of Cryptosporidium Species/Genotypes and Relationships with Other Zoonotic Pathogens in Surface Water from Mixed-Use Watersheds","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; University of Alberta; University of Calgary; Agriculture and Agri-Food Canada","funders":"","keywords":"Cryptosporidium; Biology; Salmonella; Livestock; Campylobacter; Veterinary medicine; Cryptosporidium parvum; Wildlife; Giardia; Zoonosis; Genotype; Waterborne diseases; Ecology; Feces; Water quality; Microbiology; Virology; Bacteria","score_opus":0.011126157792679258,"score_gpt":0.17657531138241364,"score_spread":0.1654491535897344,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008022620","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99854064,0.00046689966,0.00023043215,0.000023794755,0.00009154787,0.00013732539,0.00035995047,0.000009353969,0.0001400776],"genre_scores_gemma":[0.99790907,0.0000840465,0.0004007119,0.000053463846,0.000012022261,0.000006300973,0.0014284011,0.000011888065,0.000094088944],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991293,0.00009525719,0.00023226587,0.00023179848,0.0000113902315,0.0002999756],"domain_scores_gemma":[0.99956524,0.00019037054,0.00006319001,0.00015026957,0.000003139212,0.000027760263],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013492677,0.00016433306,0.0003256723,0.00011194312,0.00009626773,0.0000058499545,0.00004068175,0.00021956445,0.00033741255],"category_scores_gemma":[0.0000042573215,0.00011689816,0.000032311942,0.00007415133,0.0004239346,0.000059780385,0.00005981279,0.00015494686,0.000060190865],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000410662,0.000085432715,0.49488753,0.000001872226,0.00022377173,5.709096e-7,0.0005291492,0.00007040488,0.50391334,0.00020888745,0.000008977563,0.000028962882],"study_design_scores_gemma":[0.0006571458,0.00005238701,0.81418115,0.0000041732433,0.00040275636,0.000017720567,0.00062211626,0.0000037671794,0.18163396,0.00003142135,0.0022169559,0.0001764294],"about_ca_topic_score_codex":0.00036514367,"about_ca_topic_score_gemma":0.00018335372,"teacher_disagreement_score":0.3222794,"about_ca_system_score_codex":0.00002978141,"about_ca_system_score_gemma":0.000004268751,"threshold_uncertainty_score":0.47669688},"labels":[],"label_agreement":null},{"id":"W2008049435","doi":"10.1128/aem.00595-06","title":"Distinct Bacterial Communities Exist beneath a High Arctic Polythermal Glacier","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Directorate for Biological Sciences; University of Alberta","keywords":"Meltwater; Glacier; Geology; Arctic; Glacial period; Terminal restriction fragment length polymorphism; Geomorphology; Sediment; Physical geography; Hydrology (agriculture); Oceanography; Biology; Geography; Restriction fragment length polymorphism","score_opus":0.00424696696511079,"score_gpt":0.17002135064138804,"score_spread":0.16577438367627725,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008049435","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944488,0.000052254454,0.000013423481,0.00008502408,0.000079062076,0.00018449828,0.0001986756,0.000022508817,0.004915754],"genre_scores_gemma":[0.99767244,0.000031479918,0.00018628691,0.00022862764,0.00009212204,0.000027290047,0.001187985,0.000019463741,0.0005542764],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99884665,0.000071130286,0.0001893547,0.00028045126,0.0000541377,0.0005582466],"domain_scores_gemma":[0.99957794,0.000056138735,0.000052469753,0.00021710464,4.5619058e-7,0.000095873205],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00011303572,0.000203879,0.00021022458,0.000026879632,0.00027650542,0.000025019619,0.0002074408,0.00013084641,0.009078534],"category_scores_gemma":[0.0000014794246,0.00018288782,0.000038129885,0.000036447003,0.0012642575,0.00006375042,0.00051273947,0.0001847229,0.00092057086],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009457402,0.00018492641,0.1476619,0.000005485593,0.000017041417,0.000008906774,0.000116120646,0.000011756278,0.8494862,0.0005107119,0.00062201056,0.0012804123],"study_design_scores_gemma":[0.0015212903,0.00025196126,0.9285397,0.0000035062349,0.000023174702,0.00022375444,0.00035476254,0.000014680335,0.006794721,0.0020353536,0.059776835,0.00046025784],"about_ca_topic_score_codex":0.0042893,"about_ca_topic_score_gemma":0.0017223705,"teacher_disagreement_score":0.8426914,"about_ca_system_score_codex":0.00015295492,"about_ca_system_score_gemma":0.0000040207356,"threshold_uncertainty_score":0.9998573},"labels":[],"label_agreement":null},{"id":"W2008245269","doi":"10.1128/aem.67.7.3309-3313.2001","title":"Decrease in <i>Cryptosporidium parvum</i> Oocyst Infectivity In Vitro by Using the Membrane Filter Dissolution Method for Recovering Oocysts from Water Samples","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Infectivity; Cryptosporidium parvum; Microbiology; Membrane filter; Filtration (mathematics); Cellulose acetate; Acetone; In vitro; Biology; Dissolution; Chromatography; Cryptosporidium; Membrane; Chemistry; Virology; Biochemistry; Feces; Virus","score_opus":0.009466926080106838,"score_gpt":0.22265099819402245,"score_spread":0.2131840721139156,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008245269","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99131066,0.000444895,0.0068225283,0.00007156512,0.00021541385,0.00044361298,0.0006236008,0.00001413169,0.000053571246],"genre_scores_gemma":[0.9965169,0.00022500241,0.00069448684,0.00033426183,0.00003046033,0.000101623365,0.002062706,0.000016379941,0.00001817395],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986818,0.00015019752,0.00027809912,0.00038773008,0.000010267578,0.0004919345],"domain_scores_gemma":[0.99921995,0.00052447495,0.0000599774,0.00016517415,0.0000022996446,0.00002811035],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029020433,0.0002127301,0.00031062178,0.000061816885,0.0001826178,0.000010911151,0.000082623876,0.0002713486,0.00014377896],"category_scores_gemma":[0.00002197458,0.00015484291,0.00005122878,0.00004467108,0.00021226879,0.000053232543,0.00009991436,0.00021567478,0.000024559502],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037930364,0.00019378017,0.010627255,0.0000043974715,0.000039564748,0.000002661017,0.00017903408,0.00011605623,0.9866386,0.00002331309,0.000072218434,0.0017237972],"study_design_scores_gemma":[0.0024195774,0.00005266865,0.0068006595,0.000011404425,0.00004793382,0.00014028329,0.00020784547,0.000087242035,0.9755969,0.0003393113,0.014023478,0.00027266314],"about_ca_topic_score_codex":0.0016622801,"about_ca_topic_score_gemma":0.00018037822,"teacher_disagreement_score":0.01395126,"about_ca_system_score_codex":0.00013331974,"about_ca_system_score_gemma":0.0000105663285,"threshold_uncertainty_score":0.63143104},"labels":[],"label_agreement":null},{"id":"W2008822223","doi":"10.1128/aem.00761-09","title":"Evolution of <i>Lactococcus lactis</i> Phages within a Cheese Factory","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval","funders":"","keywords":"Lactococcus lactis; Factory (object-oriented programming); Biology; Microbiology; Bacteria; Food science; Genetics; Computer science; Lactic acid","score_opus":0.003490450634084272,"score_gpt":0.1816537564685792,"score_spread":0.17816330583449494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008822223","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995679,0.00008348887,0.00008652801,0.000066115215,0.00010208118,0.0002167769,0.00007224285,0.000022074055,0.003671673],"genre_scores_gemma":[0.99894273,0.00004953861,0.00031991553,0.00032488254,0.000024982633,0.000008473979,0.00005651351,0.000009347344,0.00026362945],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991799,0.000023332996,0.00023067601,0.0003087029,0.00003297244,0.0002243985],"domain_scores_gemma":[0.99963516,0.000014309906,0.00012479065,0.00015984733,6.816848e-7,0.00006520509],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00006205705,0.00016906612,0.00019378217,0.00002828178,0.00009001411,0.000007646856,0.000110116525,0.00011988759,0.0011670316],"category_scores_gemma":[0.0000017327266,0.00015381747,0.0000482091,0.000050456707,0.00034925615,0.00010018465,0.00010128583,0.00014490967,0.00018051892],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003645169,0.00014414194,0.0014258522,0.0000025558566,0.000009551048,0.0000013226538,0.00022904079,0.000029361612,0.9945969,0.00007515127,0.000365623,0.003084059],"study_design_scores_gemma":[0.0009330918,0.00032572655,0.50010395,0.000010148468,0.000044196226,0.00011436814,0.00060214463,0.000016381942,0.4815827,0.0004069814,0.015455575,0.0004047271],"about_ca_topic_score_codex":0.00008512032,"about_ca_topic_score_gemma":0.000018428309,"teacher_disagreement_score":0.5130142,"about_ca_system_score_codex":0.00014501656,"about_ca_system_score_gemma":0.000003759395,"threshold_uncertainty_score":0.999746},"labels":[],"label_agreement":null},{"id":"W2009594480","doi":"10.1128/aem.01665-12","title":"Bioremediation and Tolerance of Humans to Heavy Metals through Microbial Processes: a Potential Role for Probiotics?","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Heavy metals in environment","field":"Environmental Science","cited_by":324,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"","keywords":"Bioremediation; Heavy metals; Biology; Biotechnology; Microbiology; Bacteria; Biochemical engineering; Environmental chemistry; Chemistry; Genetics; Engineering","score_opus":0.00712311785864432,"score_gpt":0.2079283485845212,"score_spread":0.2008052307258769,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2009594480","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944204,0.00051420834,0.003258085,0.00010298477,0.00011553437,0.0011442892,0.00018622109,0.000015492999,0.00024277839],"genre_scores_gemma":[0.982483,0.0001836635,0.016402932,0.0005015229,0.00008995119,0.00012791241,0.00011493055,0.000029407825,0.00006667081],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985349,0.000036421992,0.00036349223,0.00048130774,0.00007571065,0.00050817506],"domain_scores_gemma":[0.9994773,0.000048535436,0.0001333405,0.00020148828,0.0000014114489,0.00013790256],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025228268,0.0002582174,0.00034304126,0.000030441766,0.00013956461,0.000010114333,0.00014348129,0.00015887963,0.00018225105],"category_scores_gemma":[0.00001087958,0.00024044795,0.000043856362,0.00007062361,0.0005903956,0.00015414307,0.00031154524,0.0000853811,0.00007754102],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000089137946,0.00024301549,0.003703379,0.000047618403,0.000024746343,1.5969786e-7,0.0014667403,0.0002718852,0.99238724,0.00006233702,0.00017821879,0.0015255045],"study_design_scores_gemma":[0.0014598186,0.00047962574,0.026723182,0.00001707035,0.00013264272,0.00005385268,0.0009304714,0.000036450227,0.93037957,0.00047961052,0.03867457,0.0006331295],"about_ca_topic_score_codex":0.000026728147,"about_ca_topic_score_gemma":0.000009581846,"teacher_disagreement_score":0.06200768,"about_ca_system_score_codex":0.00009191198,"about_ca_system_score_gemma":0.000005406955,"threshold_uncertainty_score":0.9805183},"labels":[],"label_agreement":null},{"id":"W2010045259","doi":"10.1128/aem.02123-08","title":"Genomic Regions Conserved in Lineage II <i>Escherichia coli</i> O157:H7 Strains","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"Health Canada; Canadian Food Inspection Agency","keywords":"Biology; Lineage (genetic); Genetics; Contig; Genome; GenBank; Escherichia coli; Genotyping; Primer (cosmetics); Genotype; Gene","score_opus":0.0071922697246797965,"score_gpt":0.2087060175129895,"score_spread":0.20151374778830972,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010045259","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962206,0.001090429,0.000030088922,0.00038071471,0.000034615077,0.0003140493,0.00007311716,0.000011171085,0.0018452537],"genre_scores_gemma":[0.9952986,0.0014165487,0.00042244405,0.001966043,0.00008922963,0.000035344412,0.00034100123,0.000015881105,0.00041489647],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99885243,0.00005027857,0.00020951276,0.0004541979,0.000030444624,0.00040312915],"domain_scores_gemma":[0.99962693,0.000011710787,0.00005157725,0.00022554031,0.0000026487705,0.00008160359],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011369705,0.00021116913,0.00022561816,0.000035588735,0.00015713854,0.000008829058,0.00015545158,0.00019577313,0.000018027027],"category_scores_gemma":[0.000007140737,0.00020763221,0.00004720529,0.000050391573,0.00036957202,0.000002419851,0.00025871478,0.0001821882,0.000011631625],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000082428094,0.0001603158,0.0018555609,0.0000044584735,0.000031539057,0.000004696318,0.00008736562,0.000010298836,0.996472,0.00018203116,0.00079130643,0.00031797934],"study_design_scores_gemma":[0.0049063996,0.001823058,0.34287596,0.000017111453,0.000042039763,0.00008441508,0.0010774891,0.000031063228,0.5002767,0.00040502325,0.14736874,0.0010920368],"about_ca_topic_score_codex":0.000012110773,"about_ca_topic_score_gemma":0.00004124394,"teacher_disagreement_score":0.49619535,"about_ca_system_score_codex":0.000032819687,"about_ca_system_score_gemma":0.000024764422,"threshold_uncertainty_score":0.8466996},"labels":[],"label_agreement":null},{"id":"W2010364743","doi":"10.1128/aem.02870-14","title":"Role of Plasmids in Lactobacillus brevis BSO 464 Hop Tolerance and Beer Spoilage","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fermentation and Sensory Analysis","field":"Agricultural and Biological Sciences","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Royal University Hospital","funders":"","keywords":"Plasmid; Biology; Lactobacillus brevis; Gene; Bacteria; Food spoilage; Microbiology; Genetics; Lactic acid","score_opus":0.003182241590298258,"score_gpt":0.14790099599012851,"score_spread":0.14471875439983026,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010364743","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989377,0.00013824616,6.141113e-7,0.000107814296,0.000008864165,0.00006889985,0.000046499015,0.0000052976698,0.0006860461],"genre_scores_gemma":[0.99928695,0.00020616206,0.000026458145,0.00026734354,0.000017795348,0.0000042347992,0.000117039715,6.648574e-7,0.00007336963],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994577,0.000035696452,0.0001476764,0.00020753154,0.000022550837,0.0001288231],"domain_scores_gemma":[0.9998417,0.000046942994,0.000045744287,0.00002904347,8.5527e-7,0.000035697096],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007259755,0.00009183513,0.00017952081,0.000011067138,0.000045794757,0.0000060494767,0.000050877883,0.00007471215,0.00025586484],"category_scores_gemma":[0.0000016147909,0.000043822813,0.00002413014,0.000046943045,0.00016836917,0.00002185247,0.000045965346,0.00005270166,0.000012497837],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020220294,0.000033758944,0.017094307,0.0000027520937,0.000005264804,2.2252465e-7,0.00010122815,0.0000070589904,0.9595071,0.00014446999,0.0000099911385,0.023073634],"study_design_scores_gemma":[0.00065987464,0.000182241,0.87021244,0.000008245836,0.000020118401,0.000019575577,0.0014151703,0.00012451738,0.10909939,0.00037815454,0.017613437,0.00026683972],"about_ca_topic_score_codex":0.00005474247,"about_ca_topic_score_gemma":0.00009480139,"teacher_disagreement_score":0.8531181,"about_ca_system_score_codex":0.0000080078935,"about_ca_system_score_gemma":4.455812e-7,"threshold_uncertainty_score":0.28015408},"labels":[],"label_agreement":null},{"id":"W2011115253","doi":"10.1128/aem.06527-11","title":"Use of Amplified-Fragment Length Polymorphism To Study the Ecology of Campylobacter jejuni in Environmental Water and To Predict Multilocus Sequence Typing Clonal Complexes","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Multilocus sequence typing; Amplified fragment length polymorphism; Campylobacter jejuni; Biology; Genetics; Campylobacter; Typing; Population; Genetic diversity; Genotype; Gene; Bacteria","score_opus":0.03168532769432029,"score_gpt":0.21442869391520805,"score_spread":0.18274336622088777,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011115253","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986141,0.00010908737,0.0000022110426,0.00031443557,0.00007277154,0.00066833285,0.00020447637,0.0000059803915,0.000008658201],"genre_scores_gemma":[0.9987365,0.00006955988,0.00010222542,0.0008284806,0.000044986267,0.00005015627,0.00015092852,0.0000025730283,0.000014605697],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985879,0.00017677102,0.00038452324,0.00035657085,0.000042881627,0.0004513172],"domain_scores_gemma":[0.999435,0.00026395413,0.00008037124,0.000098780496,0.0000014976482,0.00012039197],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003043425,0.00020399575,0.0003688879,0.000026556432,0.000090719164,0.00000577438,0.00016331639,0.00012044084,0.000185185],"category_scores_gemma":[0.000005515608,0.00008203185,0.00003499769,0.0000437621,0.00034432134,0.00004621873,0.00044187307,0.000115815186,0.00001563426],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000076704615,0.00026412,0.3663828,0.0000015005274,0.000023176264,5.32075e-7,0.00081100105,0.0000059673325,0.62874806,0.000021021124,0.000013468264,0.0036516513],"study_design_scores_gemma":[0.0002971004,0.0005588356,0.95846176,0.0000037031382,0.000022155216,0.000038621336,0.0017291241,0.0000023997304,0.035904612,0.00002872789,0.002787981,0.00016500354],"about_ca_topic_score_codex":0.0002676609,"about_ca_topic_score_gemma":0.000112199086,"teacher_disagreement_score":0.5928435,"about_ca_system_score_codex":0.000039675844,"about_ca_system_score_gemma":0.0000012571602,"threshold_uncertainty_score":0.33451617},"labels":[],"label_agreement":null},{"id":"W2011321044","doi":"10.1128/aem.67.8.3767-3770.2001","title":"<i>Sinorhizobium meliloti</i> Cells Require Biotin and either Cobalt or Methionine for Growth","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Sinorhizobium meliloti; Biotin; Methionine; Cobalt; Biochemistry; Chemistry; Biology; Microbiology; Bacteria; Genetics; Amino acid; Nitrogen fixation; Inorganic chemistry","score_opus":0.008958823033560503,"score_gpt":0.17850599342921297,"score_spread":0.16954717039565248,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011321044","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977026,0.00034194413,0.000003013227,0.00088937813,0.00006967164,0.0003610353,0.00026433961,0.0000370313,0.00033100523],"genre_scores_gemma":[0.9969963,0.0003030142,0.0005487296,0.0012212329,0.00011935387,0.000032466676,0.00022126063,0.0000035110934,0.0005541246],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99897355,0.0000322585,0.00018309751,0.00044003947,0.00003152046,0.0003395538],"domain_scores_gemma":[0.9996255,0.00016215992,0.00007196496,0.000049148286,0.0000034933284,0.000087717315],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012229086,0.0002024825,0.00023216543,0.000010280462,0.00020323221,0.000022180364,0.000117452575,0.00018454922,0.00030997317],"category_scores_gemma":[0.0000040226505,0.00008282292,0.000044162283,0.00006634388,0.00025741593,0.000051024206,0.00012341824,0.00008244975,0.00003881615],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011542462,0.00006571179,0.0016418648,0.000006556856,0.000024180707,0.0000017796823,0.000030793162,1.7120986e-8,0.9928906,0.000238581,0.00068598683,0.0042984984],"study_design_scores_gemma":[0.0008424687,0.00055210246,0.006331816,0.0000073420038,0.000051084982,0.00013343032,0.00041652704,0.0000012070366,0.93061686,0.0004958209,0.060148127,0.0004032239],"about_ca_topic_score_codex":0.000050881914,"about_ca_topic_score_gemma":0.000044723085,"teacher_disagreement_score":0.062273756,"about_ca_system_score_codex":0.000022562917,"about_ca_system_score_gemma":0.0000021463666,"threshold_uncertainty_score":0.3393989},"labels":[],"label_agreement":null},{"id":"W2011525840","doi":"10.1128/aem.01585-07","title":"Role of <i>galK</i> and <i>galM</i> in Galactose Metabolism by <i>Streptococcus thermophilus</i>","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies; Canadian Institutes of Health Research; Novalait; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation","keywords":"Streptococcus thermophilus; Galactose; Lactose; Streptococcus salivarius; Galactokinase; Biochemistry; Beta-galactosidase; Microbiology; Streptococcus; Biology; Chemistry; Bacteria; Lactobacillus; Escherichia coli; Genetics; Fermentation; Gene","score_opus":0.0018726034187046647,"score_gpt":0.14460894619599768,"score_spread":0.14273634277729302,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011525840","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959332,0.0021549,0.0000010400413,0.000072022565,0.0000193367,0.00021002634,0.00019009555,0.000009537973,0.0014098813],"genre_scores_gemma":[0.9988602,0.00055214105,0.000024524777,0.0003265554,0.000025842852,0.0000063242896,0.00018244033,0.0000017093857,0.000020257594],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991321,0.00001808487,0.00023491039,0.00029463053,0.000032455922,0.00028779297],"domain_scores_gemma":[0.99975157,0.000055662396,0.00007516978,0.000045645313,0.0000013596404,0.00007059831],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016333755,0.00015579768,0.00022483112,0.000013101032,0.000053014337,0.0000071842173,0.000096730604,0.00015388652,0.00005602767],"category_scores_gemma":[0.0000010349271,0.00007393254,0.000028700159,0.00006402619,0.00025304957,0.000027196753,0.00012762555,0.00011690726,0.0000040578693],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034604353,0.00011628307,0.00926803,0.0000025143481,0.000009474836,7.030241e-7,0.00006238558,1.2026365e-7,0.96746445,0.00018992835,0.000043479344,0.022808043],"study_design_scores_gemma":[0.00073105533,0.00018448647,0.28035143,0.0000073211127,0.000018268378,0.000020489508,0.000863491,0.0000020458672,0.68219763,0.0007588262,0.03456139,0.0003035748],"about_ca_topic_score_codex":0.000045474026,"about_ca_topic_score_gemma":0.000043921133,"teacher_disagreement_score":0.28526682,"about_ca_system_score_codex":0.000011467447,"about_ca_system_score_gemma":0.0000011391568,"threshold_uncertainty_score":0.30148816},"labels":[],"label_agreement":null},{"id":"W2011749940","doi":"10.1128/aem.69.9.5423-5432.2003","title":"Genetic and Biochemical Characterization of the Phosphoenolpyruvate:Glucose/Mannose Phosphotransferase System of<i>Streptococcus thermophilus</i>","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"PEP group translocation; Mannose; Operon; Phosphoenolpyruvate carboxykinase; Biology; Biochemistry; Streptococcus thermophilus; Gene; Phosphotransferase; Enzyme; Molecular biology; Microbiology; Escherichia coli","score_opus":0.003373398918713721,"score_gpt":0.16945422809822963,"score_spread":0.16608082917951592,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011749940","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99854934,0.00038282588,0.000021725284,0.000012352313,0.00004440025,0.00057557103,0.000121938065,0.00000877834,0.0002830921],"genre_scores_gemma":[0.9994983,0.00023150055,0.000057998812,0.000052385276,0.000007860921,0.000041655643,0.00008099756,0.000011720202,0.000017579252],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99940294,0.000020469475,0.0002171422,0.00020890294,0.000027847376,0.00012272099],"domain_scores_gemma":[0.99969864,0.000014936382,0.0000736239,0.00016483497,0.0000031682855,0.000044822642],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000027576103,0.00013358635,0.00023461043,0.000022031963,0.000052122334,0.0000021860171,0.000029287805,0.00010622365,0.000045554065],"category_scores_gemma":[0.0000012894396,0.000090436675,0.00004366416,0.000049964554,0.0003257092,0.000009103568,0.000028960896,0.00006645293,0.0000031468703],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040140112,0.0001649314,0.07481068,0.000050963034,0.000069559464,0.0000013378148,0.00006060533,3.1140806e-7,0.92376226,0.0002599125,0.0000029067853,0.00077636587],"study_design_scores_gemma":[0.0011477162,0.00010084757,0.16826472,0.000024601282,0.000097971766,0.000108142944,0.00008118965,0.0000022010097,0.8297655,0.000012742669,0.00032993485,0.000064439286],"about_ca_topic_score_codex":0.000014361448,"about_ca_topic_score_gemma":2.774252e-7,"teacher_disagreement_score":0.09399679,"about_ca_system_score_codex":0.00002760711,"about_ca_system_score_gemma":0.000008955077,"threshold_uncertainty_score":0.36879006},"labels":[],"label_agreement":null},{"id":"W2011816178","doi":"10.1128/aem.01284-08","title":"Identification of <i>Bacillus cereus</i> Group Species Associated with Food Poisoning Outbreaks in British Columbia, Canada","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia; Public Health Agency of Canada; BC Centre for Disease Control","funders":"British Columbia Centre for Disease Control","keywords":"Bacillus cereus; Outbreak; Food poisoning; Identification (biology); Cereus; Biology; Food microbiology; Microbiology; Bacteria; Ecology; Virology","score_opus":0.0040811810567841925,"score_gpt":0.1476735593095445,"score_spread":0.1435923782527603,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011816178","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99889857,0.00028826122,0.000020367297,0.000008175172,0.00003351403,0.0001591795,0.0004178957,0.0000022924144,0.00017174175],"genre_scores_gemma":[0.9983817,0.00035985615,0.000016245658,0.00006156558,0.000022145894,0.0000156022,0.0008205057,0.000012432541,0.00030994488],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99921167,0.000028025299,0.000211123,0.0002779742,0.00004830176,0.00022290622],"domain_scores_gemma":[0.99974144,0.000012017288,0.00008378111,0.00011573802,0.000005438617,0.000041563348],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008074829,0.000083695144,0.00017132329,0.000012246827,0.000086047585,0.000012316438,0.00008767773,0.00011885242,0.000029915884],"category_scores_gemma":[0.000007861488,0.00011185738,0.0000182221,0.000041364674,0.00030234733,0.0000025252161,0.0000810641,0.00007563727,6.7069004e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024706023,0.000057240963,0.0719919,0.000005321216,0.000030339455,0.0000044902886,0.000025754378,0.0000031840552,0.9271479,0.000002382712,0.0001803636,0.00052639225],"study_design_scores_gemma":[0.00203736,0.0004854693,0.81946677,0.000016215454,0.000011274566,0.00015803386,0.00040064345,0.0000030792908,0.17032954,0.000011565749,0.0067448653,0.00033515328],"about_ca_topic_score_codex":0.05432553,"about_ca_topic_score_gemma":0.71071255,"teacher_disagreement_score":0.75681835,"about_ca_system_score_codex":0.000048667483,"about_ca_system_score_gemma":0.000043357137,"threshold_uncertainty_score":0.9519718},"labels":[],"label_agreement":null},{"id":"W2012445035","doi":"10.1128/aem.01451-14","title":"Evaluating Bias of Illumina-Based Bacterial 16S rRNA Gene Profiles","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":261,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Wilfrid Laurier University; University of Waterloo","funders":"Canadian Institutes of Health Research","keywords":"Amplicon; Pooling; Biology; Amplicon sequencing; Metagenomics; Illumina dye sequencing; 16S ribosomal RNA; Massive parallel sequencing; Computational biology; Genetics; DNA sequencing; Deep sequencing; Polymerase chain reaction; Gene; Genome; Computer science; Artificial intelligence","score_opus":0.019098098771818586,"score_gpt":0.2235709644622311,"score_spread":0.2044728656904125,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012445035","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998088,0.00001917232,0.000086120046,0.00005135176,0.00010495936,0.00023712145,0.00006451452,0.00001620884,0.0013325427],"genre_scores_gemma":[0.99643457,0.000015028538,0.0023984641,0.00046234272,0.000042862528,0.000021760232,0.0005564485,0.000015299514,0.000053236792],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987411,0.00026810193,0.00029841156,0.0003478632,0.000037648482,0.00030687064],"domain_scores_gemma":[0.9992909,0.00019060068,0.0001732781,0.00028489274,0.0000011457957,0.000059171114],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004060497,0.00019956057,0.0003139087,0.000029745617,0.00018674447,0.0000045613697,0.00023051845,0.00020667628,0.004858567],"category_scores_gemma":[0.000015210954,0.00018282101,0.000050480925,0.000045059372,0.0011539119,0.000029875435,0.0003641124,0.00017180496,0.00023038297],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009315512,0.00011458837,0.0057409727,0.000009316578,0.000013299745,3.0047596e-7,0.00012399418,0.00019790613,0.98924994,0.00007584633,0.00023664128,0.004144023],"study_design_scores_gemma":[0.0022289704,0.0010445731,0.0676337,0.000009437864,0.00006214905,0.000044650034,0.00015052072,0.00042469765,0.9075215,0.0008755233,0.019458538,0.00054573384],"about_ca_topic_score_codex":0.000066017674,"about_ca_topic_score_gemma":0.000038392176,"teacher_disagreement_score":0.08172845,"about_ca_system_score_codex":0.00004560945,"about_ca_system_score_gemma":0.000006306519,"threshold_uncertainty_score":0.99605113},"labels":[],"label_agreement":null},{"id":"W2012608129","doi":"10.1128/aem.72.1.753-759.2006","title":"Multicopy Integration and Expression of Heterologous Genes in <i>Methylobacterium extorquens</i> ATCC 55366","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"","keywords":"Biology; Gene; Transposable element; Genetics; Chromosomal region; Locus (genetics); Molecular biology; Mutant","score_opus":0.0019587237027633864,"score_gpt":0.16049981683518058,"score_spread":0.15854109313241718,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012608129","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980668,0.0014605413,0.00022194984,0.000011944237,0.00006774062,0.00011235903,0.000027788905,0.0000047279727,0.000026135576],"genre_scores_gemma":[0.9980047,0.0006248299,0.00082350435,0.000041373558,0.000084387706,0.000009736766,0.00036968113,0.000009104461,0.00003271155],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994154,0.00002144778,0.00016271137,0.0002630245,0.000013093428,0.00012435457],"domain_scores_gemma":[0.9998288,0.0000026370687,0.000048878137,0.000100355384,0.000001911694,0.000017391452],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005997628,0.00011667842,0.00013604431,0.00003233919,0.000021680999,0.0000034767472,0.000035398436,0.00014607594,0.0000040185455],"category_scores_gemma":[0.0000017411398,0.00010299698,0.000017455603,0.000017974797,0.00013895733,0.0000024284354,0.000061126055,0.00005004558,9.320252e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048032976,0.000045469904,0.0024705415,0.000009887362,0.0000032754792,2.909287e-7,0.000018840272,0.00003396221,0.9952115,0.0000142612835,0.000026019743,0.002117957],"study_design_scores_gemma":[0.0004067006,0.000072425864,0.011857015,0.000004988524,0.0000055380356,0.000030194216,0.000037637692,0.0000040734517,0.98469853,0.000017004211,0.002764458,0.00010140984],"about_ca_topic_score_codex":0.000036102174,"about_ca_topic_score_gemma":0.000013025088,"teacher_disagreement_score":0.010512907,"about_ca_system_score_codex":0.0000065840363,"about_ca_system_score_gemma":0.0000020170353,"threshold_uncertainty_score":0.4200095},"labels":[],"label_agreement":null},{"id":"W2012948029","doi":"10.1128/aem.01387-10","title":"Relative and Absolute Quantitative Real-Time PCR-Based Quantifications of <i>hcnC</i> and <i>phlD</i> Gene Transcripts in Natural Soil Spiked with <i>Pseudomonas</i> sp. Strain LBUM300","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Moncton","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Real-time polymerase chain reaction; RNA extraction; TaqMan; Pseudomonas; Gene expression; Gene; Strain (injury); Bacteria; RNA; Molecular biology; Genetics","score_opus":0.0039366379437508646,"score_gpt":0.1962079575791666,"score_spread":0.19227131963541572,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012948029","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975228,0.00038039975,0.0008352687,0.00018925186,0.000015022883,0.00041586775,0.00039153348,0.000011789925,0.00023808861],"genre_scores_gemma":[0.98755944,0.0005260937,0.010356554,0.00021802312,0.000011662549,0.000077975346,0.0011791472,0.000022150216,0.000048926762],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989324,0.000043437154,0.00024720625,0.00052651676,0.00002928831,0.00022110886],"domain_scores_gemma":[0.9995482,0.000031021453,0.00011651901,0.00023408256,0.000007521298,0.00006264121],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013067487,0.00022043471,0.00024792543,0.00004997716,0.00008948332,0.000007490237,0.00009684602,0.00025362038,0.0000068075524],"category_scores_gemma":[0.0000034012073,0.00019483657,0.000032790213,0.000054983717,0.0010610403,0.000005724878,0.00006360682,0.00020262938,0.0000015195171],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012916706,0.00009577345,0.0010539594,0.000010578926,0.000035152527,0.0000014854303,0.0000864851,0.0000040691784,0.996587,0.0015851363,0.000040351235,0.00037087343],"study_design_scores_gemma":[0.0014150216,0.00040651308,0.012763295,0.000010220571,0.00004450133,0.00008241598,0.00013109882,0.000056329372,0.98281837,0.00027178947,0.0016730544,0.00032741204],"about_ca_topic_score_codex":0.000038734557,"about_ca_topic_score_gemma":0.0001319634,"teacher_disagreement_score":0.013768621,"about_ca_system_score_codex":0.00000626555,"about_ca_system_score_gemma":0.000020983687,"threshold_uncertainty_score":0.7945205},"labels":[],"label_agreement":null},{"id":"W2013021983","doi":"10.1128/aem.72.1.869-879.2006","title":"Gene Targeting in the Gram-Positive Bacterium <i>Lactococcus lactis</i> , Using Various Delta Ribozymes","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Université de Sherbrooke","funders":"Canadian Institutes of Health Research; Génome Québec; Francis Crick Institute; Université de Sherbrooke; McGill University","keywords":"Ribozyme; Biology; Mammalian CPEB3 ribozyme; Lactococcus lactis; Ligase ribozyme; RNA; Molecular biology; Gene; Bacteria; Genetics","score_opus":0.0037949267577412904,"score_gpt":0.17621572138824032,"score_spread":0.17242079463049903,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013021983","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99753934,0.00085289864,0.000761304,0.000054718374,0.00004989766,0.0003320126,0.00010353377,0.0000050817252,0.00030119967],"genre_scores_gemma":[0.9971492,0.000110401794,0.0011753312,0.00054320646,0.00013257442,0.000039693812,0.0008037539,0.000018744633,0.000027056532],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990528,0.0000891655,0.00018584834,0.00035077488,0.000029826295,0.00029154596],"domain_scores_gemma":[0.9997206,0.000021462845,0.00007338448,0.00015878324,0.0000017629267,0.00002405693],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015739564,0.00018515994,0.00015123274,0.000023165316,0.00012415057,0.000019544312,0.0001360254,0.00018422195,0.000018495804],"category_scores_gemma":[0.0000020876835,0.000145937,0.000041455543,0.000029511706,0.00014587474,0.0000032844032,0.00010746813,0.00009170097,0.0000065616937],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004501455,0.00006368617,0.0012784976,0.000003181577,0.00001422994,0.0000058932237,0.00004815685,0.00002495032,0.9977177,0.00006886206,0.00012367168,0.00060620485],"study_design_scores_gemma":[0.00042691795,0.00008602804,0.003430967,0.0000031541035,0.00001763201,0.00013197905,0.00020227973,0.000005832155,0.9885037,0.00022368212,0.0067489794,0.00021887102],"about_ca_topic_score_codex":0.00012469209,"about_ca_topic_score_gemma":0.000018053637,"teacher_disagreement_score":0.009213974,"about_ca_system_score_codex":0.00001895439,"about_ca_system_score_gemma":0.000007993311,"threshold_uncertainty_score":0.59511375},"labels":[],"label_agreement":null},{"id":"W2013455871","doi":"10.1128/aem.72.3.1900-1909.2006","title":"Chromosomal Dynamism in Progeny of Outbreak-Related Sorbitol-Fermenting Enterohemorrhagic<i>Escherichia coli</i>O157:NM","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Vrije Universiteit Brussel; Bundesministerium für Bildung und Forschung; Public Health Agency; Public Health Agency of Canada","keywords":"Pulsed-field gel electrophoresis; Biology; Microbiology; Outbreak; Escherichia coli; Shiga toxin; Shiga-like toxin; Lysogen; Virology; Strain (injury); Genetics; Genotype; Gene; Bacteriophage","score_opus":0.002367032838338157,"score_gpt":0.18082835289857965,"score_spread":0.17846132006024149,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013455871","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966191,0.0010119317,0.00001880627,0.000042589607,0.000047246955,0.0003742824,0.00006872788,0.000009681497,0.0018076492],"genre_scores_gemma":[0.99832493,0.00023859848,0.00042081586,0.000097426164,0.0000469739,0.00006699716,0.00052376,0.000025718147,0.0002548055],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986325,0.00005648961,0.00036407687,0.00046502615,0.00005395527,0.0004279351],"domain_scores_gemma":[0.999627,0.000014197075,0.0001162245,0.00019187747,0.000004758205,0.0000459621],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012806876,0.00023373861,0.00028882734,0.00004731409,0.00007256249,0.000007812418,0.00015020641,0.00021696334,0.00002639455],"category_scores_gemma":[0.0000050036006,0.00022719045,0.00005978737,0.00006996982,0.00045641413,0.0000037308037,0.0003815421,0.0001552152,0.000009027132],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059976373,0.000230761,0.038961932,0.000029208986,0.000055910168,0.000005526832,0.00005167374,0.000022540711,0.9600625,0.00007315029,0.000065268025,0.0003815547],"study_design_scores_gemma":[0.0030756989,0.0004024345,0.14098106,0.00002318133,0.00003572559,0.00006487626,0.00038761532,0.00010107754,0.8493711,0.00017315066,0.004861203,0.00052287534],"about_ca_topic_score_codex":0.00007069823,"about_ca_topic_score_gemma":0.000052006424,"teacher_disagreement_score":0.1106914,"about_ca_system_score_codex":0.0000346295,"about_ca_system_score_gemma":0.000016106847,"threshold_uncertainty_score":0.9264558},"labels":[],"label_agreement":null},{"id":"W2013497508","doi":"10.1128/aem.00070-10","title":"Pronounced Effect of the Nature of the Inoculum on Biofilm Development in Flow Systems","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University","funders":"Natural Sciences and Engineering Research Council of Canada; Advanced Foods and Materials Network","keywords":"Biofilm; Flow (mathematics); Microbiology; Biology; Biological system; Biochemical engineering; Chemistry; Bacteria; Food science; Mechanics; Genetics; Physics; Engineering","score_opus":0.001419961845211558,"score_gpt":0.1580527906226389,"score_spread":0.15663282877742735,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013497508","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990558,0.00007728246,3.6638568e-7,0.00002709354,0.00033976516,0.00031150694,0.0000348128,0.000001125934,0.0001522297],"genre_scores_gemma":[0.9997122,0.000011998193,0.000062567655,0.00006904014,0.000032766373,0.000009328076,0.000058013993,0.00000709391,0.00003696629],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994701,0.000035413745,0.00015558278,0.00018652399,0.000025445419,0.00012692242],"domain_scores_gemma":[0.99967843,0.000010563748,0.000086600274,0.0002087423,0.000001651414,0.000013985341],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010728023,0.00011429229,0.00014262702,0.00001182885,0.000045738587,0.000002821528,0.00012470841,0.00027611208,0.0000032643475],"category_scores_gemma":[0.000004602861,0.00006137345,0.00003601255,0.00002633249,0.00023906723,7.544245e-7,0.00015727915,0.00018307504,0.0000010413859],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005737412,0.000027064196,0.009096097,0.00001671422,0.000014715312,5.8141463e-8,0.00002746311,0.00000844103,0.98990285,0.000049192142,0.000019038298,0.00078097824],"study_design_scores_gemma":[0.00041071314,0.00008505105,0.02656591,0.000012728005,0.0000054147054,0.000011345628,0.000020188925,0.0000023567811,0.9666107,0.0000011634467,0.0062038167,0.000070564274],"about_ca_topic_score_codex":0.000008594499,"about_ca_topic_score_gemma":0.000022193528,"teacher_disagreement_score":0.023292115,"about_ca_system_score_codex":0.000008114299,"about_ca_system_score_gemma":0.000011267878,"threshold_uncertainty_score":0.25027367},"labels":[],"label_agreement":null},{"id":"W2013522623","doi":"10.1128/aem.69.5.2548-2554.2003","title":"Determining Diversity of Freshwater Fungi on Decaying Leaves: Comparison of Traditional and Molecular Approaches","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":202,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Mount Allison University","funders":"","keywords":"Species richness; Species evenness; Biology; Temperature gradient gel electrophoresis; Botany; Hyphomycetes; Conidium; Restriction fragment length polymorphism; Terminal restriction fragment length polymorphism; Species diversity; Beech; Biodiversity; Ecology; Bacteria; Polymerase chain reaction; 16S ribosomal RNA","score_opus":0.02390239168277147,"score_gpt":0.18797478319749836,"score_spread":0.16407239151472688,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013522623","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980559,0.00066765555,0.00012642248,0.0000020649522,0.000012312411,0.00006635089,0.00067078625,0.0000013163177,0.0003972183],"genre_scores_gemma":[0.9990033,0.000079217134,0.00047312365,0.000055286688,0.0000064369797,0.0000028765205,0.00037008058,0.0000051174134,0.000004553409],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99955064,0.000023334629,0.00011078873,0.00019292375,0.000022890375,0.000099416924],"domain_scores_gemma":[0.99982804,0.000013770804,0.00005285649,0.00006988588,0.000001019138,0.0000344486],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000036851954,0.0000928883,0.0001405381,0.000019889238,0.000055809884,0.0000017061928,0.000039815633,0.00008151421,0.00001079047],"category_scores_gemma":[0.0000021101337,0.00008595748,0.000030099958,0.0000086681375,0.00019678978,0.0000013097415,0.000064389016,0.000033992055,6.097141e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003982479,0.00011574771,0.05337535,0.000014651721,0.00003476724,9.783058e-7,0.000055873898,0.000024430034,0.945427,0.0003944425,0.000019831308,0.0004970954],"study_design_scores_gemma":[0.00041362294,0.00026495408,0.018621797,0.0000059338595,0.000029707324,0.000022054208,0.000373808,0.000010349708,0.9796375,0.000064247426,0.00043965483,0.0001163908],"about_ca_topic_score_codex":8.394077e-7,"about_ca_topic_score_gemma":0.0000011973891,"teacher_disagreement_score":0.03475355,"about_ca_system_score_codex":0.0000032051375,"about_ca_system_score_gemma":0.0000033240353,"threshold_uncertainty_score":0.35052443},"labels":[],"label_agreement":null},{"id":"W2013688339","doi":"10.1128/aem.05814-11","title":"Characterization of the Poly-β-1,6- <i>N</i> -Acetylglucosamine Polysaccharide Component of Burkholderia Biofilms","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University of Manitoba; Kane Biotech (Canada)","funders":"","keywords":"Burkholderia cenocepacia; Biofilm; Microbiology; Burkholderia cepacia complex; Burkholderia; Biology; Bacteria","score_opus":0.010298326262454829,"score_gpt":0.19593749682942196,"score_spread":0.18563917056696713,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013688339","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989151,0.00024115546,0.000060702154,0.000060970615,0.000049238304,0.00031141588,0.0001684741,0.000006093074,0.0001868946],"genre_scores_gemma":[0.99882734,0.00018403516,0.0006409085,0.00011416269,0.000014512583,0.000011015383,0.00014590415,0.000010546728,0.00005156535],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993705,0.00001939319,0.00023196818,0.00017015515,0.000050127754,0.00015784259],"domain_scores_gemma":[0.9996102,0.000017922544,0.00012411659,0.00019941588,0.0000031823097,0.000045158627],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005502793,0.000103475046,0.00024170491,0.000036242516,0.000030580275,0.0000010731239,0.000085963424,0.00006316826,0.00019259514],"category_scores_gemma":[0.0000036138867,0.0000708352,0.00004298945,0.000051660878,0.0005694888,0.000018480698,0.00014108603,0.00007719227,0.0000060136235],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019811733,0.00016272035,0.0067741303,0.00003991297,0.000033501263,5.326741e-7,0.0001756695,4.4979437e-8,0.99114394,0.00012432183,0.0000069947528,0.0013400828],"study_design_scores_gemma":[0.00059995305,0.00014629634,0.15140338,0.00001791945,0.000024123327,0.00004487794,0.0001048513,0.0000022962695,0.84701216,0.000015626209,0.00057657115,0.000051953164],"about_ca_topic_score_codex":0.000038172842,"about_ca_topic_score_gemma":0.0000011814567,"teacher_disagreement_score":0.14462925,"about_ca_system_score_codex":0.000017809174,"about_ca_system_score_gemma":0.000009455856,"threshold_uncertainty_score":0.28885755},"labels":[],"label_agreement":null},{"id":"W2013720620","doi":"10.1128/aem.04169-13","title":"Duplex PCR Methods for the Molecular Detection of <i>Escherichia fergusonii</i> Isolates from Broiler Chickens","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enterobacteriaceae and Cronobacter Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"National Association of Friendship Centres; Université de Sherbrooke; Jewish General Hospital; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Microbiology; Enumeration; Gene; Real-time polymerase chain reaction; Broiler; Escherichia coli; Molecular biology; Genetics; Food science","score_opus":0.005376033915109166,"score_gpt":0.2328199382964608,"score_spread":0.22744390438135165,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013720620","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9453701,0.00092021865,0.05323084,0.000059742975,0.00006516348,0.00023085497,0.000071094866,0.0000043741106,0.0000476535],"genre_scores_gemma":[0.9955723,0.00033119152,0.0031530298,0.00036131125,0.00007349173,0.000059373186,0.00038637852,0.000020637164,0.00004224931],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99923605,0.00007880417,0.0001546747,0.00030949496,0.000016132528,0.00020481698],"domain_scores_gemma":[0.9995956,0.000057001093,0.00006464871,0.00024181519,0.0000038256712,0.00003714686],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014437508,0.00014151476,0.00015646376,0.00001338029,0.00008452866,0.000010975914,0.00014269628,0.00015184948,0.000022907285],"category_scores_gemma":[0.0000073675533,0.000107004525,0.000068822614,0.00001785058,0.00020887937,0.0000021001542,0.0001589281,0.00007953374,0.000004282201],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011955735,0.000033426626,0.00047742558,0.0000067524193,0.000092368246,3.4096665e-8,0.000028026589,0.0000060851085,0.9826595,0.00003417507,0.000025077927,0.016517578],"study_design_scores_gemma":[0.00054392463,0.0002140361,0.0025130152,0.0000020161579,0.00003134998,0.0000049576283,0.00007742365,0.000066438915,0.9431876,0.00010734916,0.053136364,0.00011552761],"about_ca_topic_score_codex":0.000028871496,"about_ca_topic_score_gemma":0.000012442606,"teacher_disagreement_score":0.053111285,"about_ca_system_score_codex":0.000008058347,"about_ca_system_score_gemma":0.0000043931204,"threshold_uncertainty_score":0.43635178},"labels":[],"label_agreement":null},{"id":"W2013838926","doi":"10.1128/aem.68.12.6405-6409.2002","title":"Sensitivity of <i>Listeria monocytogenes</i> to Sanitizers Used in the Meat Processing Industry","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":101,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Canadian Institute for Public Safety Research and Treatment","funders":"","keywords":"Listeria monocytogenes; Microbiology; Ribotyping; Plasmid; Biology; Listeria; Pulsed-field gel electrophoresis; Hand sanitizer; Genotype; Bacteria; Gene; Food science; Genetics","score_opus":0.036054088778880035,"score_gpt":0.24540316734205228,"score_spread":0.20934907856317225,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013838926","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986296,0.00028569982,0.000081654725,0.00012831415,0.00004018678,0.00026141468,0.000081886596,0.000003849859,0.00048736818],"genre_scores_gemma":[0.9981253,0.00006262954,0.00022849643,0.0013479019,0.000053320917,0.00002299521,0.00010850751,0.000015786905,0.000035067023],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99909854,0.00010165713,0.00020437335,0.00033785106,0.000035200483,0.00022239267],"domain_scores_gemma":[0.9996312,0.000017318986,0.00006355661,0.00024545845,0.0000022065608,0.00004025296],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017486683,0.0001641113,0.00018064525,0.00002871252,0.00005582678,0.000009213361,0.00013402356,0.00026615078,0.000021133],"category_scores_gemma":[0.0000044323656,0.00013584713,0.00003170591,0.00005009507,0.0002314064,0.0000029437242,0.00023311574,0.000112977184,0.0000070576475],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054776545,0.000064434855,0.007673305,0.000010788059,0.000012594985,0.0000034048826,0.0003404078,0.00003952316,0.98901045,0.000009933123,0.00011855247,0.0026618096],"study_design_scores_gemma":[0.0008013962,0.00017066933,0.010222341,0.000008937034,0.000018983816,0.00019936856,0.0011682495,0.000016471657,0.97449493,0.000011627838,0.012619211,0.0002678062],"about_ca_topic_score_codex":0.000013316233,"about_ca_topic_score_gemma":0.0000278747,"teacher_disagreement_score":0.014515532,"about_ca_system_score_codex":0.000016263824,"about_ca_system_score_gemma":0.0000050581516,"threshold_uncertainty_score":0.55396855},"labels":[],"label_agreement":null},{"id":"W2014125498","doi":"10.1128/aem.00237-14","title":"Characterization of Temperate Phages Infecting Clostridium difficile Isolates of Human and Animal Origins","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Clostridium difficile; Biology; Microbiology; Clostridiaceae; Temperate climate; Clostridium; Human pathogen; Virology; Bacteria; Genetics; Ecology; Antibiotics","score_opus":0.008209464416472113,"score_gpt":0.23006295269917815,"score_spread":0.22185348828270604,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2014125498","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992366,0.00009308152,0.000009991755,0.000058681217,0.000018681512,0.00023899933,0.000079461905,0.0000126187015,0.00025192488],"genre_scores_gemma":[0.99917066,0.00030575242,0.000028991335,0.000036011,0.00006187405,0.000007810502,0.0003320976,0.000017029466,0.00003976756],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99916106,0.000029682418,0.00029327493,0.00026411278,0.00004376062,0.00020811048],"domain_scores_gemma":[0.9996275,0.000048769198,0.00011675247,0.0001317357,0.000007473254,0.000067819776],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011580819,0.00015355207,0.00036636344,0.00008416222,0.00008025047,0.000005762691,0.000042124237,0.00012524822,0.0000834526],"category_scores_gemma":[0.000007968223,0.00013520372,0.000035761575,0.000057186946,0.00035198432,0.000023197861,0.00010843465,0.00013872341,0.000004624133],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000103548606,0.00016968073,0.011924869,0.00010714631,0.00003982218,5.982527e-7,0.00013468158,2.8968913e-7,0.9858815,0.00024227056,0.0000048496922,0.0013907176],"study_design_scores_gemma":[0.001150962,0.0007727122,0.017527368,0.000024689414,0.00004760041,0.000044619857,0.0001469693,0.000027097665,0.9796156,0.00000766501,0.00052639353,0.00010830813],"about_ca_topic_score_codex":0.00003109025,"about_ca_topic_score_gemma":0.0000014083282,"teacher_disagreement_score":0.0062659113,"about_ca_system_score_codex":0.000032168533,"about_ca_system_score_gemma":0.000009890131,"threshold_uncertainty_score":0.55134475},"labels":[],"label_agreement":null},{"id":"W2014426503","doi":"10.1128/aem.01768-10","title":"Versatile Enzyme Expression and Characterization System for Aspergillus nidulans, with the Penicillium brevicompactum Polyketide Synthase Gene from the Mycophenolic Acid Gene Cluster as a Test Case","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":104,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fondation Chalmers; Danmarks Frie Forskningsfond","keywords":"Aspergillus nidulans; Polyketide synthase; Gene cluster; Gene; Biology; Aspergillus; Enzyme; Biochemistry; Penicillium; Gene expression; Mycophenolic acid; Genetics; Polyketide; Chemistry; Biosynthesis; Mutant","score_opus":0.007867417216640733,"score_gpt":0.17311164057030973,"score_spread":0.165244223353669,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2014426503","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963332,0.0009542795,0.000098492055,0.0006385433,0.000057518406,0.0009974401,0.00087205396,0.000020583459,0.000027904829],"genre_scores_gemma":[0.9971716,0.00018776477,0.00038855663,0.0012589481,0.0001853429,0.000021592752,0.00070666027,0.000026917302,0.000052623407],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990893,0.000045370554,0.00018477185,0.0004059662,0.000036863537,0.00023771595],"domain_scores_gemma":[0.9994026,0.00012108903,0.00011860653,0.00027768948,0.000005152466,0.00007489323],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010718485,0.00023265863,0.00028032603,0.000020561487,0.0002816267,0.000017740675,0.000084091706,0.0001270211,0.00009659814],"category_scores_gemma":[0.000006607442,0.00011174666,0.000036676327,0.000029390305,0.00027887308,0.000034836852,0.00010320646,0.00012743191,0.000016269676],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005727043,0.000065650434,0.00039348326,0.000031545565,0.00006170638,0.000030317007,0.00066618266,1.13143194e-7,0.99669605,0.000006722624,0.00012797792,0.0013475363],"study_design_scores_gemma":[0.0013855012,0.00026481954,0.0030655537,0.000044928685,0.0002344761,0.0032323278,0.0009706568,0.000012066744,0.98628527,0.0000023260845,0.0043219505,0.00018012],"about_ca_topic_score_codex":0.00014980425,"about_ca_topic_score_gemma":0.000012951361,"teacher_disagreement_score":0.010410788,"about_ca_system_score_codex":0.000044124055,"about_ca_system_score_gemma":0.000010250391,"threshold_uncertainty_score":0.45568964},"labels":[],"label_agreement":null},{"id":"W2014429684","doi":"10.1128/aem.03692-14","title":"Genotype-Specific Variation in the Structure of Root Fungal Communities Is Related to Chickpea Plant Productivity","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Genome Prairie; University of Saskatchewan","funders":"Centers for Disease Control and Prevention","keywords":"Biology; Trichoderma harzianum; Cultivar; Fusarium; Productivity; Agronomy; Crop; Intraspecific competition; Fungicide; Symbiosis; Botany; Horticulture; Biological pest control; Ecology; Bacteria","score_opus":0.012674407683516284,"score_gpt":0.17572929188833422,"score_spread":0.16305488420481795,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2014429684","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984608,0.00014628907,6.726283e-7,0.00032753282,0.000058719103,0.00017937366,0.00067980855,0.0000052892433,0.00014146714],"genre_scores_gemma":[0.9991356,0.000049218273,0.000021767428,0.00014560284,0.00002040447,0.000003133764,0.00060780725,6.894956e-7,0.000015760073],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99948955,0.00009518009,0.00014185712,0.00012273154,0.000028913078,0.00012178411],"domain_scores_gemma":[0.9998004,0.00005143623,0.000053202064,0.00006899217,0.000003077302,0.000022881839],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013392782,0.000090718095,0.000118734046,0.000013879289,0.00009281533,0.000011820274,0.00014716627,0.00007916134,0.00009097567],"category_scores_gemma":[0.0000017982944,0.000035854562,0.000016059621,0.000078874924,0.00009093398,0.000035834833,0.00008304556,0.0001709404,0.000011924554],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005092698,0.00007389421,0.0047704536,0.000001301113,0.0000059376644,4.72376e-7,0.0030533501,0.000007971122,0.99016166,0.000092047085,0.00024213687,0.0015398249],"study_design_scores_gemma":[0.00036876675,0.00033855412,0.87185997,0.0000137038505,0.00001040672,0.00028872755,0.008351701,0.000005462415,0.08892275,0.00070020667,0.02890898,0.00023076117],"about_ca_topic_score_codex":0.00035901106,"about_ca_topic_score_gemma":0.00063432875,"teacher_disagreement_score":0.9012389,"about_ca_system_score_codex":0.000022986664,"about_ca_system_score_gemma":0.0000019032078,"threshold_uncertainty_score":0.14621067},"labels":[],"label_agreement":null},{"id":"W2015076056","doi":"10.1128/aem.02943-10","title":"Molecular Definition of Vaginal Microbiota in East African Commercial Sex Workers","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Agriculture and Agri-Food Canada; Public Health Agency of Canada; University of Manitoba","funders":"Canadian Institutes of Health Research; National Institutes of Health; Bill and Melinda Gates Foundation","keywords":"Bacterial vaginosis; Biology; Lactobacillus crispatus; Lactobacillus; Gardnerella vaginalis; Dysbiosis; Multilocus sequence typing; Microbiology; Phylogenetic tree; Microbiome; Cohort; Immunology; Genetics; Genotype; Gene; Bacteria; Internal medicine; Medicine","score_opus":0.019164278765818058,"score_gpt":0.20769685925142542,"score_spread":0.18853258048560737,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2015076056","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.991123,0.00046126833,0.000050802202,0.000038114908,0.000088783476,0.00027765165,0.00008213812,0.000014608504,0.00786359],"genre_scores_gemma":[0.99921304,0.00006493733,0.00030501324,0.000050415732,0.000007498535,0.000033667384,0.00025764896,0.000016227103,0.000051537434],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988256,0.00013428883,0.0002748456,0.0004028983,0.000013125213,0.00034922798],"domain_scores_gemma":[0.99962187,0.000037015976,0.0000841104,0.00023133567,0.000004240061,0.000021404145],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017601204,0.00017826231,0.000281614,0.00017692776,0.00007175417,0.0000027404947,0.00013874423,0.00023086368,0.00049020554],"category_scores_gemma":[0.000005018639,0.00017641291,0.000046250756,0.00010312334,0.001054126,0.000032922617,0.00014614021,0.00032186098,0.00016006701],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018209669,0.00039941756,0.057019223,0.000009010812,0.00007234525,0.000004255492,0.00074964215,0.0000011959222,0.9378413,0.0007395738,0.00005184435,0.0029301273],"study_design_scores_gemma":[0.0015687675,0.0002697434,0.29859594,0.000011556772,0.000028892719,0.00028077094,0.0020042604,1.0816267e-7,0.6943968,0.000498076,0.0020776705,0.00026743123],"about_ca_topic_score_codex":0.00020908027,"about_ca_topic_score_gemma":0.000016147735,"teacher_disagreement_score":0.24344447,"about_ca_system_score_codex":0.00005827025,"about_ca_system_score_gemma":0.000015994303,"threshold_uncertainty_score":0.719391},"labels":[],"label_agreement":null},{"id":"W2016250792","doi":"10.1128/aem.03784-12","title":"Antifungal Hydroxy Fatty Acids Produced during Sourdough Fermentation: Microbial and Enzymatic Pathways, and Antifungal Activity in Bread","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":155,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Antifungal; Fermentation; Enzyme; Biochemistry; Food science; Chemistry; Biology; Microbiology","score_opus":0.006224809585451867,"score_gpt":0.15773956479262552,"score_spread":0.15151475520717364,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2016250792","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998817,0.00017401412,8.485518e-7,0.00025625117,0.000045493118,0.00051075185,0.00010192551,0.000021128768,0.000072555864],"genre_scores_gemma":[0.9992697,0.00025312311,0.00007607774,0.00012321411,0.00005586415,0.000030258769,0.00014993921,0.000002880499,0.00003890214],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99882805,0.000048862705,0.00020937028,0.0005194642,0.00003661443,0.00035763197],"domain_scores_gemma":[0.9997446,0.00003192629,0.00007607977,0.000058262107,0.00000221919,0.00008690232],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009240359,0.00022935173,0.00025764017,0.000021167416,0.00021062332,0.000060563343,0.000082556624,0.00016491565,0.00012011152],"category_scores_gemma":[0.0000019709573,0.00012190895,0.000024974512,0.00006205183,0.0002862562,0.00011566696,0.00022924459,0.00017264453,0.000017439559],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036105004,0.00011436668,0.03629536,0.000020021047,0.000014544204,0.0000023288312,0.00014372995,4.363061e-7,0.95438176,0.000022967795,0.000012510889,0.008955851],"study_design_scores_gemma":[0.0006285181,0.00010773474,0.7279078,0.000012368507,0.000009822164,0.000095014635,0.00029337898,0.000016364678,0.27051178,0.00010958958,0.00007868192,0.00022896293],"about_ca_topic_score_codex":0.00007579738,"about_ca_topic_score_gemma":0.000021783575,"teacher_disagreement_score":0.6916124,"about_ca_system_score_codex":0.00003181365,"about_ca_system_score_gemma":0.000002481328,"threshold_uncertainty_score":0.49713027},"labels":[],"label_agreement":null},{"id":"W2016488959","doi":"10.1128/aem.00242-14","title":"Microbiota of Human Breast Tissue","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":561,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ottawa Regional Cancer Foundation; Lawson Health Research Institute; Western University","funders":"Canadian Institutes of Health Research; University College Cork; London Health Sciences Centre","keywords":"Biology; Gammaproteobacteria; Citrobacter; Propionibacterium; Microbiology; Population; Klebsiella; Staphylococcus; Prevotella; Bacteria; Enterobacteriaceae; Staphylococcus aureus; 16S ribosomal RNA; Escherichia coli; Medicine; Genetics","score_opus":0.0024818681693939233,"score_gpt":0.191679813001963,"score_spread":0.18919794483256908,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2016488959","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982764,0.00021481403,0.00010137327,0.000054794953,0.000043659315,0.00013667186,0.00013644597,0.0000058916385,0.0010299225],"genre_scores_gemma":[0.99809927,0.00009608452,0.0002462867,0.00034909043,0.00008489836,0.0000053417066,0.0008406736,0.000018528835,0.000259834],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991807,0.000032056003,0.00019959701,0.00033542854,0.000015523183,0.00023671259],"domain_scores_gemma":[0.9996236,0.000005691664,0.00008083247,0.00022616879,0.0000026449864,0.00006107149],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000089484194,0.00015575571,0.00019817488,0.000029504641,0.000085249114,0.000004082,0.00011590763,0.00018907274,0.00007006161],"category_scores_gemma":[9.58284e-7,0.0001491993,0.000033351014,0.000019380335,0.00032512564,0.0000011731549,0.00015590171,0.000070318856,0.00002624184],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017534552,0.00006514433,0.0014769923,0.000020500205,0.000019016272,1.6804955e-7,0.00002959251,0.0000015923592,0.99549687,0.0003184122,0.0006843643,0.0018697878],"study_design_scores_gemma":[0.00084578246,0.00036025635,0.018275179,0.000006152685,0.000017691716,0.00018759644,0.00007852539,8.761817e-7,0.91897243,0.000061616825,0.06095401,0.00023989555],"about_ca_topic_score_codex":0.00001835295,"about_ca_topic_score_gemma":0.000007290505,"teacher_disagreement_score":0.076524474,"about_ca_system_score_codex":0.000008801431,"about_ca_system_score_gemma":0.0000067486017,"threshold_uncertainty_score":0.6084171},"labels":[],"label_agreement":null},{"id":"W2016702710","doi":"10.1128/aem.02116-09","title":"Physical Characteristics of Spores of Food-Associated Isolates of the <i>Bacillus cereus</i> Group","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"British Columbia Centre for Disease Control; U.S. Department of Agriculture","keywords":"Bacillus cereus; Spore; Cereus; Sensu stricto; Bacillus thuringiensis; Microbiology; Biology; Bacillaceae; Bacillales; Bacillus (shape); Food science; Bacteria; Bacillus subtilis; Genetics; Zoology","score_opus":0.003457401442760392,"score_gpt":0.17802470358917777,"score_spread":0.17456730214641739,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2016702710","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99903154,0.00017835492,0.000010695448,0.000018611585,0.00003262201,0.00013030211,0.00041479972,0.0000013703738,0.00018171898],"genre_scores_gemma":[0.9993988,0.00023542305,0.00002029592,0.000053624524,0.000033130826,0.0000022371512,0.00022721433,0.0000069367584,0.000022299908],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994027,0.000027734635,0.00020651877,0.00017426047,0.000033618493,0.00015518359],"domain_scores_gemma":[0.9996224,0.000013223253,0.0001538997,0.00017747407,0.00000645337,0.00002653676],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000669072,0.00010921687,0.0002432399,0.00001317595,0.000030074085,0.0000016468584,0.00014331454,0.00012914525,0.00001086967],"category_scores_gemma":[0.000007761489,0.00007944818,0.00007413154,0.00003322198,0.00041442522,0.000001285005,0.00012324832,0.000064335356,6.877714e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010937398,0.00020959145,0.0024502028,0.000012325721,0.00004221381,6.582781e-8,0.000057534737,6.254511e-7,0.99364793,0.00018504374,0.000029720972,0.003255384],"study_design_scores_gemma":[0.0005152976,0.00075238285,0.062651575,0.0000069996377,0.000016547456,0.0000035604978,0.000036814938,0.0000024939438,0.93481004,0.00017633737,0.00093978044,0.00008816614],"about_ca_topic_score_codex":0.0000052329983,"about_ca_topic_score_gemma":0.0000026674159,"teacher_disagreement_score":0.06020137,"about_ca_system_score_codex":0.0000062807553,"about_ca_system_score_gemma":0.000007950606,"threshold_uncertainty_score":0.32398027},"labels":[],"label_agreement":null},{"id":"W2017151971","doi":"10.1128/aem.71.3.1546-1552.2005","title":"In Vivo Monitoring of Obligate Biotrophic Pathogen Growth by Kinetic PCR","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Natural Resources Canada; Canadian Forest Service","funders":"","keywords":"Obligate; Biology; Pathogen; Obligate parasite; Wheat leaf rust; Powdery mildew; Botany; Microbiology; Ecology; Biotechnology; Host (biology); Virulence; Genetics; Gene","score_opus":0.004192549714353206,"score_gpt":0.15090301143801615,"score_spread":0.14671046172366295,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2017151971","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99806815,0.0010047364,4.686943e-7,0.00015691496,0.000024187626,0.00008543117,0.0005046332,0.000006299685,0.00014915637],"genre_scores_gemma":[0.9983545,0.0011925902,0.00013265962,0.0000905108,0.000066068955,0.0000068443196,0.00007593613,9.274665e-7,0.000079955396],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993824,0.00001732769,0.00015952725,0.00021882301,0.000025130825,0.0001968278],"domain_scores_gemma":[0.99985486,0.000028450937,0.000051159917,0.000026650601,9.4331443e-7,0.000037927857],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000047205263,0.00010717777,0.00015401945,0.000009444106,0.00004175658,0.0000041403346,0.00008884933,0.00009644039,0.00009792788],"category_scores_gemma":[5.84868e-7,0.000047582977,0.000024220202,0.00005115227,0.000115816656,0.000022926772,0.00005245765,0.00006174158,0.000011169309],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014318025,0.000055849985,0.011796455,0.0000032795915,0.000003711419,0.000001918889,0.000014472558,0.0000016520991,0.9854234,0.00003294508,0.00009030504,0.0025617017],"study_design_scores_gemma":[0.00029162815,0.00009437369,0.09891718,0.000011174676,0.0000071977174,0.000029518935,0.00014754373,0.0000030235656,0.87362486,0.00007959799,0.026592148,0.00020177985],"about_ca_topic_score_codex":0.000029572406,"about_ca_topic_score_gemma":0.0000148787285,"teacher_disagreement_score":0.111798555,"about_ca_system_score_codex":0.000016018035,"about_ca_system_score_gemma":6.89532e-7,"threshold_uncertainty_score":0.19403775},"labels":[],"label_agreement":null},{"id":"W2017963660","doi":"10.1128/aem.66.6.2302-2310.2000","title":"Production of Exopolysaccharide by <i>Lactobacillus rhamnosus</i> R and Analysis of Its Enzymatic Degradation during Prolonged Fermentation","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolites in Food Biotechnology","field":"Nursing","cited_by":213,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Agriculture and Agri-Food Canada","funders":"","keywords":"Fermentation; Lactose; Chemistry; Food science; Lactobacillus rhamnosus; Enzyme; Yield (engineering); Biochemistry; Lactobacillus; Chromatography","score_opus":0.004235161192926744,"score_gpt":0.18741474944257536,"score_spread":0.1831795882496486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2017963660","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99828553,0.00091036427,0.000009509795,0.00012170445,0.00007745433,0.0004006722,0.00014978666,0.00002056452,0.000024383731],"genre_scores_gemma":[0.99858785,0.0005457271,0.00028963125,0.000052900352,0.000010994554,0.000016479755,0.00041256353,0.000012593036,0.00007128037],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99896103,0.00005307725,0.00038812603,0.00036861736,0.000041280033,0.00018786748],"domain_scores_gemma":[0.9995722,0.000018926929,0.00020794652,0.00016955644,0.0000039498573,0.000027379743],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000098756784,0.00016022102,0.0003746581,0.00018386598,0.000072434275,0.000004652976,0.000073123905,0.0001862324,0.00012904813],"category_scores_gemma":[0.0000073512765,0.00015848923,0.000040240044,0.00021396576,0.000359779,0.00006075809,0.000043746284,0.00010393927,0.0000041312737],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023409132,0.0001016503,0.0027448877,0.00006205812,0.00018878825,1.3931675e-7,0.0003440726,0.000018257584,0.9846032,0.000017678869,0.000021362399,0.011663762],"study_design_scores_gemma":[0.000523999,0.00010816192,0.016953591,0.000008623677,0.00045201753,0.000024684754,0.00018509648,0.000021714124,0.981359,0.000025814765,0.00020543722,0.00013187896],"about_ca_topic_score_codex":0.000014268297,"about_ca_topic_score_gemma":0.0000053211825,"teacher_disagreement_score":0.014208703,"about_ca_system_score_codex":0.00004292329,"about_ca_system_score_gemma":0.000001918722,"threshold_uncertainty_score":0.6463003},"labels":[],"label_agreement":null},{"id":"W2018044098","doi":"10.1128/aem.00659-10","title":"Iron-Dependent Remodeling of Fungal Metabolic Pathways Associated with Ferrichrome Biosynthesis","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Ferrichrome; Siderophore; Biochemistry; Biosynthesis; Arginase; Ornithine; Biology; Schizosaccharomyces pombe; Glutamate synthase; Deferoxamine; Metabolic pathway; Enzyme; Mutant; Arginine; Glutamine; Glutamine synthetase; Amino acid; Gene; Escherichia coli","score_opus":0.005344522152049745,"score_gpt":0.17783612517296998,"score_spread":0.17249160302092023,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018044098","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985567,0.00042329164,0.000036862868,0.00001937109,0.00004132471,0.00014444755,0.00019932416,0.0000059072936,0.00057282025],"genre_scores_gemma":[0.9987533,0.0002947438,0.00038500733,0.00006184102,0.000051153875,0.000014285685,0.00030990347,0.000023082232,0.000106654734],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990962,0.000030980056,0.00016603449,0.0003652404,0.00006124822,0.0002802544],"domain_scores_gemma":[0.99960566,0.00001787894,0.00006982206,0.0002211704,0.0000067869923,0.00007865919],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013950665,0.0001683626,0.0002012047,0.000039607905,0.000074912365,0.0000070463484,0.00014499591,0.00022153836,0.000049271523],"category_scores_gemma":[0.000008574009,0.00013565643,0.00003897731,0.00003464239,0.00032945545,0.0000017859127,0.00018687776,0.00016665141,0.000009425429],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000064162225,0.00010778761,0.003906381,0.000006018334,0.000059864407,0.0000014073789,0.000029788882,0.000022883543,0.99404794,0.0000672198,0.000016237373,0.0016702814],"study_design_scores_gemma":[0.0005741823,0.00019700965,0.0077158012,0.0000034689542,0.000027529857,0.00005262903,0.000097319,0.000019589272,0.9899171,0.000028757748,0.0011796791,0.00018695497],"about_ca_topic_score_codex":0.000008891712,"about_ca_topic_score_gemma":0.00002935359,"teacher_disagreement_score":0.004130889,"about_ca_system_score_codex":0.000006253466,"about_ca_system_score_gemma":0.000019693884,"threshold_uncertainty_score":0.5531909},"labels":[],"label_agreement":null},{"id":"W2018710872","doi":"10.1128/aem.70.8.4532-4537.2004","title":"Purification, Cloning, and Sequencing of a 3,5-Dichlorophenol Reductive Dehalogenase from <i>Desulfitobacterium frappieri</i> PCP-1","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Dehalogenase; Corrinoid; Biochemistry; Chemistry; Open reading frame; Biology; Peptide sequence; Enzyme; DNA; Gene","score_opus":0.004993252527492052,"score_gpt":0.16216565155517335,"score_spread":0.1571723990276813,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018710872","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99863327,0.00016688806,0.00007658666,0.000108135464,0.00006783446,0.00023988429,0.00029301658,0.000017721772,0.00039663783],"genre_scores_gemma":[0.9968703,0.0002901571,0.0021322458,0.00036173718,0.000030095329,0.0000085532,0.00027249902,0.00001357673,0.00002084775],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989449,0.000023775541,0.00027637032,0.00047040576,0.000052044717,0.00023254764],"domain_scores_gemma":[0.99955344,0.000020988591,0.0001526384,0.00017307504,0.0000014827816,0.000098384575],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008314994,0.0001913831,0.0002148658,0.000024672123,0.00010286303,0.000010538498,0.00011187735,0.0001493788,0.00040873355],"category_scores_gemma":[0.0000044068574,0.00017507315,0.000027219743,0.0000625926,0.0008232053,0.00006563861,0.00017314925,0.00010638302,0.000099579636],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034901037,0.000056898924,0.005050477,0.0000033913627,0.000018954452,0.0000016807579,0.00084742834,0.000019843661,0.99278325,0.000050897328,0.000052132338,0.001080156],"study_design_scores_gemma":[0.0009425032,0.00007898206,0.041454516,0.000007863316,0.000022639328,0.000034106488,0.00080184464,0.0000022828176,0.9534186,0.00052524934,0.0024571356,0.00025426695],"about_ca_topic_score_codex":0.00033097315,"about_ca_topic_score_gemma":0.00003253586,"teacher_disagreement_score":0.03936463,"about_ca_system_score_codex":0.00015491573,"about_ca_system_score_gemma":0.000009724211,"threshold_uncertainty_score":0.71392757},"labels":[],"label_agreement":null},{"id":"W2018745604","doi":"10.1128/aem.00081-07","title":"Nitric Oxide Reductase-Targeted Real-Time PCR Quantification of Denitrifier Populations in Soil","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Nova Scotia Department of Agriculture; University of Guelph; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; University of British Columbia","keywords":"Microcosm; Denitrifying bacteria; Population; Nitrous-oxide reductase; Biology; Denitrification; Soil microbiology; Botany; Microbiology; Food science; Soil water; Chemistry; Ecology; Nitrogen","score_opus":0.013274334066724125,"score_gpt":0.2203059541968304,"score_spread":0.2070316201301063,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018745604","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99694175,0.000045001165,0.00005089054,0.000029089342,0.000033037195,0.00022482222,0.000049329483,0.000013792771,0.0026122725],"genre_scores_gemma":[0.9979895,0.000090528185,0.000780051,0.00010442528,0.000010372664,0.00000520084,0.0008325937,0.000011876999,0.0001754918],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99886763,0.000102105,0.00038331441,0.0003009846,0.000029427658,0.00031654778],"domain_scores_gemma":[0.99944824,0.000107662505,0.00014064377,0.00024799648,0.0000011219903,0.00005436453],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00035951074,0.00015532914,0.00024752753,0.00009515259,0.00010859382,0.000002481423,0.00017109053,0.00023477778,0.0018055637],"category_scores_gemma":[0.000007330726,0.00015960835,0.000035037967,0.00016081856,0.00061966706,0.00004592735,0.00018197138,0.00019955449,0.00040322813],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000077529956,0.0001744352,0.026123643,0.0000035860737,0.000007892379,0.0000015454087,0.00013814113,0.00017180944,0.9721551,0.00021275714,0.00044284575,0.00049070176],"study_design_scores_gemma":[0.00073642447,0.00006982406,0.73786664,0.000004183851,0.000023455344,0.000045124278,0.00035452071,0.000030006182,0.25739664,0.0016123982,0.0015652512,0.00029551733],"about_ca_topic_score_codex":0.0005442057,"about_ca_topic_score_gemma":0.000492601,"teacher_disagreement_score":0.71475846,"about_ca_system_score_codex":0.00009459343,"about_ca_system_score_gemma":0.000004742181,"threshold_uncertainty_score":0.99910694},"labels":[],"label_agreement":null},{"id":"W2019488331","doi":"10.1128/aem.03738-14","title":"Pathogenic Potential, Genetic Diversity, and Population Structure of Escherichia coli Strains Isolated from a Forest-Dominated Watershed (Comox Lake) in British Columbia, Canada","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Victoria","funders":"","keywords":"Biology; Escherichia coli; Microbiology; Genetic diversity; Shiga toxin; Enterotoxin; Population; Virulence; Genotype; Gene; Genetics","score_opus":0.0023518673242918296,"score_gpt":0.1555751618815872,"score_spread":0.1532232945572954,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2019488331","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99887115,0.00028228608,0.00003731533,0.0000104468045,0.00002702816,0.00023575577,0.0005274263,0.00000294602,0.000005643321],"genre_scores_gemma":[0.99801505,0.0002670684,0.0002102762,0.00009669075,0.000020155883,0.000005450683,0.0013528818,0.000012438911,0.00001998899],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99914145,0.000068331196,0.00017303106,0.00034471933,0.000043255484,0.00022918246],"domain_scores_gemma":[0.9997478,0.000009642589,0.00006574654,0.000115723524,0.0000046602427,0.00005639299],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003960819,0.0001146603,0.00021568981,0.0000138650275,0.00015999695,0.000013855819,0.0000950643,0.00015819348,0.000029545661],"category_scores_gemma":[0.0000061900337,0.00015581097,0.000019875211,0.000032123262,0.00019856133,0.0000027057183,0.0006301335,0.00009271529,1.5950171e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021321766,0.000018715604,0.35686582,0.000008855117,0.00003793543,0.0000030470214,0.000030715935,0.000027969845,0.64252144,3.4967346e-7,0.000027497546,0.0004363359],"study_design_scores_gemma":[0.0011546357,0.0001320879,0.99426603,0.0000054093234,0.000023027505,0.000012565142,0.00014575913,0.0001345969,0.0037323665,0.00007518179,0.00015083351,0.00016748803],"about_ca_topic_score_codex":0.31840605,"about_ca_topic_score_gemma":0.934124,"teacher_disagreement_score":0.63878906,"about_ca_system_score_codex":0.000025590634,"about_ca_system_score_gemma":0.000016908662,"threshold_uncertainty_score":0.6861327},"labels":[],"label_agreement":null},{"id":"W2020489394","doi":"10.1128/aem.67.8.3549-3556.2001","title":"Phosphorus-31 Nuclear Magnetic Resonance Study of the Effect of Pentachlorophenol (PCP) on the Physiologies of PCP-Degrading Microorganisms","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lakehead University; University of Guelph; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Fondation pour la Recherche Médicale","keywords":"Pentachlorophenol; Strain (injury); Chemistry; Biochemistry; Phospholipid; Metabolite; Molecular biology; Biology; Membrane; Environmental chemistry","score_opus":0.00340120157480172,"score_gpt":0.16943683053502642,"score_spread":0.1660356289602247,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2020489394","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99615407,0.0029714992,9.913464e-7,0.000032159365,0.000057608697,0.00045062575,0.00004400638,0.0000023829634,0.0002866537],"genre_scores_gemma":[0.99803704,0.0017365027,0.000029671199,0.000073356125,0.000019337152,0.000016675222,0.000011934127,0.000014627921,0.000060857335],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99919826,0.00007536764,0.00022773074,0.0002816841,0.000042444317,0.00017450402],"domain_scores_gemma":[0.9994399,0.000051301395,0.00014914003,0.00034198433,0.0000031006289,0.000014597617],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011904659,0.00017735595,0.00031276944,0.00001954177,0.00010191461,0.0000025049776,0.0002561908,0.00008120067,0.000023867931],"category_scores_gemma":[0.000011020456,0.00010065617,0.00007076424,0.000059572205,0.0005001121,0.0000011470792,0.00035858413,0.000089671106,0.0000020163463],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026443054,0.00015323288,0.01112807,0.000009382083,0.00006499194,2.8973545e-7,0.00013973654,0.0000040790933,0.9863868,0.00013266709,0.0001338288,0.0015824904],"study_design_scores_gemma":[0.00094738876,0.002745382,0.055757754,0.000006819824,0.000040768628,0.000009031235,0.0013420802,8.8199226e-7,0.93386126,0.000035682246,0.0051393798,0.000113557864],"about_ca_topic_score_codex":0.000020202093,"about_ca_topic_score_gemma":0.0000025553961,"teacher_disagreement_score":0.052525528,"about_ca_system_score_codex":0.0000092760165,"about_ca_system_score_gemma":0.0000034763154,"threshold_uncertainty_score":0.41046396},"labels":[],"label_agreement":null},{"id":"W2020835376","doi":"10.1128/aem.00983-08","title":"Potential To Reduce <i>Escherichia coli</i> Shedding in Cattle Feces by Using Sainfoin ( <i>Onobrychis viciifolia</i> ) Forage, Tested In Vitro and In Vivo","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; University of Manitoba","funders":"Canadian Dairy Commission","keywords":"Silage; Hay; Biology; Feces; Inoculation; Forage; Fodder; Manure; Animal feed; Escherichia coli; Food science; Agronomy; Animal science; Botany; Horticulture; Microbiology; Biochemistry","score_opus":0.00773002518066355,"score_gpt":0.1893049186128794,"score_spread":0.18157489343221586,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2020835376","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99889636,0.00024812913,0.000001830761,0.00024094044,0.000030457102,0.00029091703,0.00014643588,0.000009264089,0.00013564262],"genre_scores_gemma":[0.9984652,0.00028841302,0.0001506946,0.00087422977,0.000024715822,0.000026565674,0.00014519345,0.0000022019365,0.000022794826],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99893075,0.00005562384,0.00023885326,0.00040217218,0.000026609312,0.0003459929],"domain_scores_gemma":[0.999779,0.00006478569,0.000047613794,0.000033954006,0.0000013520188,0.000073325275],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007523749,0.00017191662,0.00027803253,0.000038039467,0.00009678209,0.000008874689,0.00008387399,0.0001374074,0.00004650106],"category_scores_gemma":[0.000003439151,0.00010135494,0.000018079783,0.00016634479,0.0002110755,0.000050603678,0.000114963186,0.00012793165,0.0000059019976],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018677727,0.0001496466,0.009895418,0.0000032948267,0.0000020018301,0.0000081250155,0.00008509916,0.000025267087,0.98840564,0.0000044495305,0.0001447823,0.0010895173],"study_design_scores_gemma":[0.0015154569,0.00023082708,0.30887508,0.000020247384,0.0000052774762,0.000112417816,0.0008552924,0.00006574721,0.6833549,0.00008860179,0.0044014114,0.00047475242],"about_ca_topic_score_codex":0.0004900996,"about_ca_topic_score_gemma":0.00017865447,"teacher_disagreement_score":0.30505073,"about_ca_system_score_codex":0.000056170724,"about_ca_system_score_gemma":0.000003501522,"threshold_uncertainty_score":0.41331345},"labels":[],"label_agreement":null},{"id":"W2020894519","doi":"10.1128/aem.01873-12","title":"Functional Characterization of Reductive Dehalogenases by Using Blue Native Polyacrylamide Gel Electrophoresis","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Sächsisches Staatsministerium für Wissenschaft und Kunst","keywords":"Dehalococcoides; Dehalogenase; Polyacrylamide gel electrophoresis; Gel electrophoresis; Enzyme; Biology; Biochemistry; Strain (injury); Bacteria; Two-dimensional gel electrophoresis; Chemistry; Gene; Microbiology; Proteomics; Vinyl chloride; Genetics","score_opus":0.006372155971133923,"score_gpt":0.17437172134437914,"score_spread":0.16799956537324523,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2020894519","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99902683,0.000097469325,0.00015343788,0.000025255777,0.00009877719,0.00017096922,0.00030013706,0.000008882322,0.00011821034],"genre_scores_gemma":[0.9986228,0.00014213183,0.00016016306,0.00020743109,0.000041042935,0.000004441973,0.0007162501,0.000011544593,0.00009423711],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99919087,0.000038943224,0.00019588471,0.00023850701,0.000055564826,0.00028020656],"domain_scores_gemma":[0.99968916,0.000018319492,0.00013850907,0.0000790325,0.0000012772203,0.00007367516],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0000811228,0.00015352665,0.00015729084,0.000027381502,0.00009205089,0.000004091263,0.00006114052,0.00011409,0.0013071777],"category_scores_gemma":[0.0000027017777,0.00013871405,0.00002990516,0.00006846869,0.00044209964,0.00009334053,0.000105293366,0.00007257098,0.00007700414],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043459862,0.00012859126,0.01710847,0.000002136219,0.000020780066,1.1168017e-7,0.00021206032,0.000003084896,0.9813714,0.000016197142,0.00033458983,0.00075914315],"study_design_scores_gemma":[0.00026218398,0.000037049864,0.06624469,0.0000016183569,0.000019816342,0.000023889252,0.00016127453,0.000006466708,0.9307907,0.000007756513,0.0022869604,0.00015754435],"about_ca_topic_score_codex":0.00003316536,"about_ca_topic_score_gemma":0.0000018066768,"teacher_disagreement_score":0.050580624,"about_ca_system_score_codex":0.00013287694,"about_ca_system_score_gemma":0.00000399887,"threshold_uncertainty_score":0.9996058},"labels":[],"label_agreement":null},{"id":"W2021169602","doi":"10.1128/aem.01117-10","title":"Wide Distribution among Halophilic Archaea of a Novel Polyhydroxyalkanoate Synthase Subtype with Homology to Bacterial Type III Synthases","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"biodegradable polymer synthesis and properties","field":"Materials Science","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National High-tech Research and Development Program; National Natural Science Foundation of China; Public Health Agency of Canada","keywords":"Haloarchaea; Polyhydroxyalkanoates; Halophile; Biology; Biochemistry; Archaea; Polyhydroxybutyrate; Extremophile; Bacteria; Microbiology; Thermophile; Enzyme; Gene; Genetics","score_opus":0.006486896406579222,"score_gpt":0.1730546987070679,"score_spread":0.16656780230048868,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2021169602","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983691,0.00021939435,0.00016874772,0.000114580675,0.00024413005,0.00020612846,0.00059014675,0.00002171321,0.000066042776],"genre_scores_gemma":[0.9988995,0.000027240721,0.00060281233,0.00009940377,0.000049736893,0.000028896573,0.00023133612,0.00001717337,0.00004387709],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99895394,0.000029434541,0.00023984638,0.0003973828,0.000045189103,0.0003341898],"domain_scores_gemma":[0.99945223,0.00008235173,0.000109525,0.00024521066,0.0000050351487,0.00010562327],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013586112,0.00020848188,0.00032767377,0.00004080957,0.00013162832,0.00001579785,0.00016914091,0.0001598123,0.00050267985],"category_scores_gemma":[0.000011824299,0.00015306399,0.000026029582,0.000052111314,0.0010118195,0.00004786012,0.00016091114,0.00012034468,0.000039196104],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052398024,0.00014398652,0.0017593268,0.00001129558,0.000017353657,0.0000024967474,0.00014156845,0.0000010320122,0.9959858,0.00018877143,0.00003188835,0.0011924863],"study_design_scores_gemma":[0.0005431198,0.0002994062,0.0042206617,0.000013551035,0.00003115913,0.0000999438,0.00008932507,0.0000047203575,0.9927614,0.000014769064,0.0017066164,0.00021536004],"about_ca_topic_score_codex":0.00038663158,"about_ca_topic_score_gemma":0.00016961887,"teacher_disagreement_score":0.0032244464,"about_ca_system_score_codex":0.000015744485,"about_ca_system_score_gemma":0.00002036141,"threshold_uncertainty_score":0.6241768},"labels":[],"label_agreement":null},{"id":"W2021554110","doi":"10.1128/aem.02900-06","title":"S-Layer-Mediated Display of the Immunoglobulin G-Binding Domain of Streptococcal Protein G on the Surface of<i>Caulobacter crescentus</i>: Development of an Immunoactive Reagent","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biochemical and Structural Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Caulobacter crescentus; Immunoprecipitation; S-layer; Biology; Protein G; Fragment crystallizable region; Recombinant DNA; Molecular biology; Antibody; Immunoglobulin G; Protein A/G; Protein A; Biochemistry; Fucosylation; Binding protein; Chemistry; Glycoprotein; Glycan; Fusion protein; Receptor; Gene","score_opus":0.004194546056647535,"score_gpt":0.18254570599956857,"score_spread":0.17835115994292103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2021554110","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99926585,0.000052504893,0.000042486015,0.000017910485,0.000025193665,0.000380379,0.00017864873,0.0000011707484,0.000035839774],"genre_scores_gemma":[0.9990821,0.000016377244,0.0003546218,0.000023785475,0.000010130925,0.0000052754253,0.0004873187,0.0000074897143,0.0000129144555],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992233,0.000044783545,0.00035450357,0.0001874945,0.00005047976,0.00013947213],"domain_scores_gemma":[0.99947876,0.000019704217,0.0002748828,0.00019692982,0.0000070725273,0.000022675824],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016155376,0.00012878937,0.00017300849,0.000011329088,0.00004621535,0.0000013406803,0.00015749973,0.00014900451,0.000015676524],"category_scores_gemma":[0.0000049616665,0.00007655817,0.00004846593,0.00003812024,0.00038092406,0.0000022572954,0.0001485753,0.00008204615,5.596381e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037435102,0.00010738816,0.0017608554,0.000018041126,0.00006239597,7.9934594e-8,0.00021174025,0.0000019663398,0.9967899,0.000056611945,0.000001746782,0.00061494607],"study_design_scores_gemma":[0.000349332,0.0001316584,0.04880232,0.0000193642,0.0000083429095,0.0000031843676,0.00032510541,5.7337394e-7,0.95001906,0.000012325764,0.00025140404,0.000077352655],"about_ca_topic_score_codex":0.0000059674917,"about_ca_topic_score_gemma":0.0000023516684,"teacher_disagreement_score":0.047041465,"about_ca_system_score_codex":0.000016120413,"about_ca_system_score_gemma":0.000014240159,"threshold_uncertainty_score":0.31219515},"labels":[],"label_agreement":null},{"id":"W2021958338","doi":"10.1128/aem.05531-11","title":"Development of<i>phoH</i>as a Novel Signature Gene for Assessing Marine Phage Diversity","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":123,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"University of Florida","keywords":"Biology; Genome; Horizontal gene transfer; Regulon; Gene; Genetics; Bacteriophage; GenBank; Phylogenetics; Phylogenetic tree; Bacterial genome size; Phylogenetic diversity; Evolutionary biology; Regulation of gene expression; Escherichia coli","score_opus":0.01518870631981467,"score_gpt":0.19744858584248418,"score_spread":0.1822598795226695,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2021958338","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9942969,0.000016705373,0.0016356482,0.000008460323,0.00008422609,0.00025083672,0.00007604247,0.00001163508,0.0036195293],"genre_scores_gemma":[0.95560753,0.000016437547,0.043701813,0.00023078058,0.000012721618,0.000016542948,0.00017802505,0.000011955596,0.00022421619],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992325,0.000006727409,0.00019135437,0.00031493083,0.000026724483,0.00022778426],"domain_scores_gemma":[0.9997113,0.000017167476,0.00010170567,0.0001100741,0.0000010231531,0.000058771177],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000072371535,0.00015743163,0.00017357591,0.000021868169,0.00027459481,0.0000065379913,0.000135319,0.000116623305,0.0020469169],"category_scores_gemma":[0.0000011154427,0.00014781153,0.000045222543,0.000031746844,0.00024908961,0.00008256599,0.0009179274,0.000094397205,0.00007203636],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004223574,0.00019630545,0.001499214,0.000006544878,0.00002957193,9.77604e-7,0.0011162083,0.0000012449386,0.98888487,0.000027524438,0.00006319336,0.008132122],"study_design_scores_gemma":[0.0008705392,0.00005717971,0.0903425,0.0000047385215,0.000042476528,0.000074506774,0.00052042934,0.000004507847,0.88957465,0.00008699022,0.018145042,0.00027643738],"about_ca_topic_score_codex":0.00009265868,"about_ca_topic_score_gemma":0.000029810219,"teacher_disagreement_score":0.099310204,"about_ca_system_score_codex":0.00007775172,"about_ca_system_score_gemma":0.0000050389594,"threshold_uncertainty_score":0.99886537},"labels":[],"label_agreement":null},{"id":"W2022561470","doi":"10.1128/aem.69.3.1817-1826.2003","title":"Inactivation of <i>gacS</i> Does Not Affect the Competitiveness of <i>Pseudomonas chlororaphis</i> in the <i>Arabidopsis thaliana</i> Rhizosphere","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Pseudomonas chlororaphis; Rhizosphere; Biology; Quorum sensing; rpoS; Population; Mutant; Arabidopsis thaliana; Rhizobacteria; Microbiology; Biofilm; Agrobacterium tumefaciens; Phyllosphere; Sigma factor; Autoinducer; Bacteria; Pseudomonas; Biochemistry; Genetics; Gene; Gene expression; Promoter; Transformation (genetics)","score_opus":0.00422843773491976,"score_gpt":0.1791228014498443,"score_spread":0.17489436371492453,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2022561470","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987051,0.00020195004,0.000011533403,0.000101616584,0.000063509535,0.00022732117,0.00008576576,0.0000015131162,0.00060167885],"genre_scores_gemma":[0.99892527,0.00031979964,0.00007529364,0.00047933584,0.000025157247,0.000010922679,0.00013420518,0.000009717865,0.000020303223],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992655,0.00012461793,0.00020023603,0.00022008068,0.000034106346,0.0001554456],"domain_scores_gemma":[0.9996015,0.000050258495,0.00012340593,0.00020701157,0.0000035125897,0.000014313351],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023170696,0.00013610462,0.00018375018,0.000013308233,0.000060458977,0.0000049686937,0.00011661018,0.00012750743,0.000016490556],"category_scores_gemma":[0.000005673762,0.000076148244,0.00005066117,0.000051133233,0.00042736903,0.0000030729489,0.00005367278,0.00007907125,9.856213e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009310925,0.000073052106,0.0052998425,0.000013497984,0.000023233972,4.4698743e-7,0.00010564683,0.0000048854104,0.99327886,0.000747689,0.000020414811,0.0003393278],"study_design_scores_gemma":[0.00047108412,0.000101474805,0.011054888,0.0000080362015,0.000015254159,0.000026166508,0.0008227101,2.494022e-7,0.97963977,0.000026187256,0.007733873,0.00010028492],"about_ca_topic_score_codex":0.00004094584,"about_ca_topic_score_gemma":0.000038939124,"teacher_disagreement_score":0.013639062,"about_ca_system_score_codex":0.0000074138843,"about_ca_system_score_gemma":0.00000855043,"threshold_uncertainty_score":0.3105235},"labels":[],"label_agreement":null},{"id":"W2022761039","doi":"10.1128/aem.00705-12","title":"Antimicrobial Resistance in Escherichia coli Isolates from Raccoons (Procyon lotor) in Southern Ontario, Canada","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ministry of Natural Resources and Forestry; Public Health Agency of Canada; Trent University; University of Guelph","funders":"Public Health Agency of Canada","keywords":"Antibiotic resistance; Escherichia coli; Veterinary medicine; Feces; Biology; Serotype; Antimicrobial; Microbiology; Antibiotics; Medicine","score_opus":0.006937214530756662,"score_gpt":0.1866576145529917,"score_spread":0.17972040002223505,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2022761039","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99696255,0.0002766835,0.0000040769405,0.0001418806,0.000107644286,0.0002838358,0.00015622008,0.000009870563,0.0020572213],"genre_scores_gemma":[0.9973253,0.00006680054,0.000407241,0.0014529708,0.000031598673,0.000010114264,0.0001400046,0.00002221614,0.0005437435],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983732,0.00005147917,0.00031847044,0.0004516945,0.00006529706,0.0007398282],"domain_scores_gemma":[0.9995014,0.000055186047,0.00007512043,0.00016318732,1.8404204e-7,0.00020491154],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00011734461,0.00028789497,0.00030148073,0.000025073112,0.00008004404,0.000011368935,0.00017297157,0.00015352014,0.002549405],"category_scores_gemma":[0.0000025484878,0.0002735953,0.000027323624,0.0000776135,0.00038222902,0.000119524004,0.00031502137,0.00033057347,0.00026370925],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000573929,0.00019373636,0.37764692,0.0000033010144,0.0000065000286,0.00000634383,0.0008336485,0.00002131388,0.62076,0.000005402093,0.00031801802,0.00014737611],"study_design_scores_gemma":[0.0019099222,0.000024163965,0.911326,0.00002806331,0.000021889766,0.000012040985,0.0010106975,0.000012859031,0.060663763,0.00009945941,0.02422619,0.0006649663],"about_ca_topic_score_codex":0.6014174,"about_ca_topic_score_gemma":0.8817555,"teacher_disagreement_score":0.56009626,"about_ca_system_score_codex":0.0008847432,"about_ca_system_score_gemma":0.000019170891,"threshold_uncertainty_score":0.9999716},"labels":[],"label_agreement":null},{"id":"W2022929841","doi":"10.1128/aem.01958-06","title":"Development and Evaluation of Methods To Detect Nucleopolyhedroviruses in Larvae of the Douglas-Fir Tussock Moth, <i>Orgyia pseudotsugata</i> (McDunnough)","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Viral Infectious Diseases and Gene Expression in Insects","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Canadian Sport Centre Pacific; University of Victoria","funders":"Natural Resources Canada","keywords":"Biology; Virology; Tussock; Virus; Larva; Lepidoptera genitalia; Microbiology; Botany","score_opus":0.008727822797883516,"score_gpt":0.2534015921738221,"score_spread":0.24467376937593857,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2022929841","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982353,0.0009975036,0.00013176062,0.000011942464,0.00006764998,0.0002734935,0.000047114278,0.0000023419825,0.00023290841],"genre_scores_gemma":[0.9959198,0.00007879208,0.0037046503,0.00015365683,0.000028053575,0.00003459264,0.00005416196,0.000010696162,0.000015573927],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992046,0.00009646699,0.00024867107,0.0002618926,0.000044414224,0.00014395085],"domain_scores_gemma":[0.99969333,0.000014406801,0.00009781281,0.00015980919,0.0000051519105,0.000029476987],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023783659,0.00012582232,0.00015409799,0.000032200143,0.000056877125,0.0000038119388,0.00008664929,0.00011560064,0.000015502612],"category_scores_gemma":[0.000006467775,0.00009811695,0.000033392094,0.00004202877,0.0001590972,0.000002261917,0.0002265456,0.00004685728,0.0000015536016],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043707943,0.000057969934,0.0042597624,0.000010945508,0.00001751647,6.353996e-8,0.000054475684,0.00021466638,0.9885495,0.000028231714,0.00016233206,0.006600839],"study_design_scores_gemma":[0.0006384403,0.00006766181,0.035616484,0.000008928119,0.000021461941,0.0000081817625,0.00009181111,0.0000084240755,0.956187,0.00015957293,0.007077508,0.00011450489],"about_ca_topic_score_codex":0.00006131178,"about_ca_topic_score_gemma":0.000067416,"teacher_disagreement_score":0.03236247,"about_ca_system_score_codex":0.000018041683,"about_ca_system_score_gemma":0.000021950074,"threshold_uncertainty_score":0.40010932},"labels":[],"label_agreement":null},{"id":"W2022971462","doi":"10.1128/aem.67.8.3530-3541.2001","title":"Identification and Functional Characterization of CbaR, a MarR-Like Modulator of the <i>cbaABC</i> -Encoded Chlorobenzoate Catabolism Pathway","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Operon; Repressor; Biology; Biochemistry; Comamonas testosteroni; Gene; Molecular biology; Inducer; Tn10; lac operon; Chemistry; Stereochemistry; Genetics; Transposable element; Gene expression; Escherichia coli; Mutant","score_opus":0.003910296683647483,"score_gpt":0.14601762435667826,"score_spread":0.14210732767303078,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2022971462","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99931675,0.000053808246,0.00006418423,0.000049374637,0.00008559209,0.0002348864,0.00011137884,0.00000643726,0.00007757496],"genre_scores_gemma":[0.9990799,0.00015520897,0.00008541873,0.00007999682,0.000016178381,0.00001507688,0.00023234537,0.000009597735,0.0003263161],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99928284,0.000026285166,0.00022824535,0.000259595,0.000060013455,0.00014300001],"domain_scores_gemma":[0.9996439,0.000009628968,0.00014848064,0.00016161246,0.0000011300459,0.00003524901],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006994335,0.00013023081,0.00015137265,0.000018486437,0.00009104119,0.0000052189607,0.00007792094,0.00007824515,0.00021705106],"category_scores_gemma":[6.437858e-7,0.00009576107,0.00003378162,0.00005314889,0.0004174062,0.00006532956,0.00017457354,0.000049317146,0.000023939096],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042957712,0.00007855877,0.028138315,0.0000049597857,0.000015992728,3.3961896e-7,0.00015523192,0.000012223136,0.9700667,0.000051019833,0.000014337393,0.0014193241],"study_design_scores_gemma":[0.0005148335,0.000023787046,0.32311666,0.000003202159,0.000024985797,0.000049529775,0.000058477926,0.000037855294,0.6743789,0.00011517638,0.0015800263,0.000096594486],"about_ca_topic_score_codex":0.000031186235,"about_ca_topic_score_gemma":0.0000057937264,"teacher_disagreement_score":0.29568788,"about_ca_system_score_codex":0.000029528388,"about_ca_system_score_gemma":0.0000028351546,"threshold_uncertainty_score":0.3905023},"labels":[],"label_agreement":null},{"id":"W2023177772","doi":"10.1128/aem.03132-14","title":"A Regulatory Feedback Loop between RpoS and SpoT Supports the Survival of Legionella pneumophila in Water","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"rpoS; Sigma factor; Mutant; Legionella pneumophila; Biology; Legionella; Microbiology; Viable but nonculturable; Wild type; Genetics; Cell biology; Gene; Bacteria; Gene expression; Promoter","score_opus":0.005457388781520034,"score_gpt":0.19116438609687483,"score_spread":0.1857069973153548,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2023177772","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.999043,0.00017827413,0.00000989356,0.00022124329,0.000027970942,0.00015826331,0.000016638049,0.0000020223674,0.00034268224],"genre_scores_gemma":[0.99907553,0.00024840675,0.000013018874,0.000119071454,0.00008536068,0.000008817736,0.00025448223,0.000013201009,0.00018208378],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99917406,0.000059990634,0.00017390524,0.0003024307,0.00003619409,0.0002534049],"domain_scores_gemma":[0.9996934,0.00002222359,0.00003544954,0.00019841545,0.0000019790841,0.000048519014],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024725497,0.00013049478,0.00018203353,0.000028263821,0.00005815849,0.0000057925627,0.00010735332,0.000154601,0.000008094173],"category_scores_gemma":[0.0000018995956,0.000084612344,0.000028118091,0.000017497436,0.000589032,0.000001931128,0.00025206245,0.00010064015,0.0000071713016],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037703434,0.000025087564,0.046724934,0.00001173677,0.000018937817,8.892659e-7,0.00006918796,0.0000026630387,0.95173746,0.000061666266,0.00007554668,0.0012341605],"study_design_scores_gemma":[0.0010377613,0.00018958627,0.10273,0.0000056159142,0.000015850515,0.000049742386,0.0002512843,0.0000043643277,0.8783848,0.00021546432,0.016903985,0.00021149672],"about_ca_topic_score_codex":0.000018184879,"about_ca_topic_score_gemma":0.000009573098,"teacher_disagreement_score":0.07335264,"about_ca_system_score_codex":0.000006826445,"about_ca_system_score_gemma":0.0000058289147,"threshold_uncertainty_score":0.34503913},"labels":[],"label_agreement":null},{"id":"W2023291847","doi":"10.1128/aem.03569-13","title":"Corexit 9500 Inactivates Two Enveloped Viruses of Aquatic Animals but Enhances the Infectivity of a Nonenveloped Fish Virus","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Infectious pancreatic necrosis virus; Infectivity; Virus; Titer; Biology; Virology; Ranavirus; Microbiology; Viral envelope","score_opus":0.007844086868470056,"score_gpt":0.2079108839441327,"score_spread":0.20006679707566266,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2023291847","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982833,0.000045157423,0.00007814203,0.00008016691,0.00005719248,0.0004610028,0.00009539681,0.000011701477,0.00088792166],"genre_scores_gemma":[0.9989022,0.00018793692,0.0003394983,0.00036023874,0.000015450974,0.00006546302,0.000027496686,0.00001529901,0.000086393324],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989435,0.000066671826,0.00035601825,0.0003253724,0.00004788935,0.00026053144],"domain_scores_gemma":[0.9992908,0.00017654004,0.00025847187,0.00022194276,0.0000017312987,0.00005051343],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00010923119,0.00021307798,0.00032639294,0.000029571225,0.00013083189,0.000014240753,0.00020142684,0.000090925954,0.0026701798],"category_scores_gemma":[0.000007112289,0.00015367247,0.000061487626,0.00008203191,0.0011237151,0.00012468056,0.0003549409,0.00014727261,0.00022041287],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000032093183,0.00016070144,0.005142284,0.000008356363,0.00004304535,3.4261546e-7,0.00041747926,0.00000704705,0.99148124,0.000027779832,0.00021821943,0.0024614346],"study_design_scores_gemma":[0.00035045898,0.00010384129,0.17734934,0.00000803874,0.000020988296,0.000023925219,0.00043331218,0.000012616443,0.8200112,0.00011569905,0.0014143505,0.00015619816],"about_ca_topic_score_codex":0.0039945757,"about_ca_topic_score_gemma":0.00034387203,"teacher_disagreement_score":0.17220706,"about_ca_system_score_codex":0.00006171708,"about_ca_system_score_gemma":0.0000060490424,"threshold_uncertainty_score":0.99824154},"labels":[],"label_agreement":null},{"id":"W2023515654","doi":"10.1128/aem.03840-14","title":"Efficacy and Mechanisms of Murine Norovirus Inhibition by Pulsed-Light Technology","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Ministère de l'Agriculture et de l'Alimentation; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation","keywords":"Murine norovirus; Norovirus; Microbiology; RNA; Virus quantification; Infectivity; Chemistry; Materials science; Virology; Food science; Biology; Virus; Biochemistry","score_opus":0.007991716710769606,"score_gpt":0.2185720860881662,"score_spread":0.2105803693773966,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2023515654","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969268,0.00062138605,0.00048891484,0.0012602571,0.000025349002,0.000280885,0.00007868631,0.000020350632,0.00029739607],"genre_scores_gemma":[0.99806666,0.00035786573,0.00060276705,0.00048417022,0.000021952275,0.000021403179,0.00035175975,0.000012421816,0.00008099199],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99912834,0.00003074943,0.00022342862,0.00029002083,0.00003495364,0.0002925009],"domain_scores_gemma":[0.99964416,0.000010490942,0.000058587808,0.00012465057,0.000003819111,0.00015827331],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012473176,0.00013578816,0.0003506116,0.00009223298,0.000032134983,0.0000021531205,0.000038110888,0.00018512622,0.00004593178],"category_scores_gemma":[0.000016196904,0.00011560938,0.00001969241,0.00004201242,0.00048503146,0.000019028994,0.000163966,0.00015861214,0.00002271497],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037827023,0.00014059649,0.0025829333,0.000017470726,0.000030998763,0.000010725602,0.00002048206,3.1499914e-7,0.9911055,0.00045848967,0.0015053344,0.0037488781],"study_design_scores_gemma":[0.013968108,0.0051265694,0.005606652,0.000046413952,0.0000800711,0.0019029723,0.00076150056,0.000015425978,0.94541717,0.004944889,0.02181831,0.00031189772],"about_ca_topic_score_codex":0.000014621546,"about_ca_topic_score_gemma":0.000002162904,"teacher_disagreement_score":0.045688316,"about_ca_system_score_codex":0.00003543279,"about_ca_system_score_gemma":0.000007315254,"threshold_uncertainty_score":0.47144136},"labels":[],"label_agreement":null},{"id":"W2023553066","doi":"10.1128/aem.03229-14","title":"Vegetation-Associated Impacts on Arctic Tundra Bacterial and Microeukaryotic Communities","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Climate change and permafrost","field":"Earth and Planetary Sciences","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University; University of Waterloo","funders":"Chinese Academy of Sciences; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China; Government of Ontario","keywords":"Tundra; Vegetation (pathology); Permafrost; Environmental science; Arctic; Ecology; Species richness; Phylogenetic diversity; Arctic vegetation; Soil water; Wetland; Vegetation type; Shrub; Biology; Phylogenetic tree","score_opus":0.010586455527783869,"score_gpt":0.1747959052320239,"score_spread":0.16420944970424003,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2023553066","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983551,0.0002382882,8.1254484e-7,0.000078323916,0.00011434867,0.000091314476,0.00040777784,0.000011363004,0.0007026705],"genre_scores_gemma":[0.99350595,0.0003782496,0.000013017613,0.00093186565,0.00005463785,0.0000012193843,0.0050911815,0.0000043769014,0.000019489753],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994443,0.00005852529,0.000111664805,0.00014401885,0.000022825769,0.00021865747],"domain_scores_gemma":[0.99961823,0.00018258339,0.000045569963,0.00008604776,0.0000010488042,0.00006651434],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009053848,0.00013254942,0.00015719731,0.000033876273,0.00018101577,0.000030828895,0.00005833265,0.00008581416,0.0009121743],"category_scores_gemma":[0.0000026720083,0.00011269582,0.0000158666,0.00001814715,0.00027084668,0.00003630719,0.000022443795,0.00009805886,0.0001374389],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009866047,0.000053815544,0.5891611,0.000050718336,0.000040819596,0.0000018329505,0.0019234665,0.000022748562,0.40403435,0.000084521744,0.0001098603,0.00441808],"study_design_scores_gemma":[0.00078608247,0.0003061886,0.99471664,0.000023391038,0.000020819165,0.000047195685,0.0007874097,0.00013124445,0.00093352894,0.00023516953,0.0018032844,0.00020903868],"about_ca_topic_score_codex":0.0007430453,"about_ca_topic_score_gemma":0.0028512648,"teacher_disagreement_score":0.40555552,"about_ca_system_score_codex":0.000006811592,"about_ca_system_score_gemma":0.0000023840557,"threshold_uncertainty_score":0.9987669},"labels":[],"label_agreement":null},{"id":"W2023617407","doi":"10.1128/aem.66.6.2349-2357.2000","title":"Molecular and Physiological Responses of Two Classes of Marine Chromophytic Phytoplankton (Diatoms and Prymnesiophytes) during the Development of Nutrient-Stimulated Blooms","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Environment Research Council; Universitetet i Bergen","keywords":"RuBisCO; Mesocosm; Biology; Phytoplankton; Bloom; Dinoflagellate; Algae; Botany; Algal bloom; Nutrient; Photosynthesis; Ecology","score_opus":0.005784754917377235,"score_gpt":0.1947355906781112,"score_spread":0.18895083576073396,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2023617407","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993299,0.00018712725,0.0000036677918,0.000012972433,0.000011599365,0.0002361479,0.000036449204,0.000005726458,0.00017636947],"genre_scores_gemma":[0.99922293,0.00029727226,0.00032200688,0.00005671728,0.000004865641,0.00001009811,0.000054300595,0.000007978462,0.000023855655],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99903774,0.00012707258,0.0003315991,0.0002666928,0.000033239357,0.00020364129],"domain_scores_gemma":[0.99950325,0.00013292735,0.0001365334,0.00018685714,0.0000013583681,0.000039055358],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011812054,0.00017899017,0.00036015268,0.000025557203,0.0001367951,0.0000019145307,0.00014334364,0.00012400697,0.0007942598],"category_scores_gemma":[0.0000036154347,0.00013001885,0.000028542645,0.000059668488,0.0017310325,0.000023428136,0.00044621844,0.00013562362,0.00000730532],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003083839,0.00016266246,0.018757286,0.000038932874,0.00003938403,0.000001243214,0.00037555734,0.00010280847,0.97883636,0.00005281097,0.0000038530998,0.0013207039],"study_design_scores_gemma":[0.0011007235,0.00021748405,0.46163523,0.000009833642,0.000029344641,0.000040098454,0.00010522705,0.000018630688,0.5361207,0.00032789496,0.0002452707,0.0001495609],"about_ca_topic_score_codex":0.000027037675,"about_ca_topic_score_gemma":0.000017409879,"teacher_disagreement_score":0.44287795,"about_ca_system_score_codex":0.000018935574,"about_ca_system_score_gemma":0.0000056760964,"threshold_uncertainty_score":0.86965877},"labels":[],"label_agreement":null},{"id":"W2024199948","doi":"10.1128/aem.00054-09","title":"<i>Rhodobacter capsulatus</i> Catalyzes Light-Dependent Fe(II) Oxidation under Anaerobic Conditions as a Potential Detoxification Mechanism","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Metal Extraction and Bioleaching","field":"Engineering","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Memorial University of Newfoundland; University of British Columbia; Howard Hughes Medical Institute; National Science Foundation","keywords":"Rhodobacter; Chemistry; Ferrous; Ferric; Inorganic chemistry; Nuclear chemistry; Photochemistry; Biochemistry; Organic chemistry","score_opus":0.0036024922416186627,"score_gpt":0.17512529087111267,"score_spread":0.17152279862949402,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024199948","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99580777,0.00013511437,0.0025394626,0.000194575,0.00019136918,0.00019881933,0.000044705364,0.00012513643,0.0007630723],"genre_scores_gemma":[0.9975947,0.0001981789,0.0002781384,0.00051404507,0.000061829596,0.00001344004,0.0011526814,0.00001596964,0.00017103052],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99926037,0.00001930402,0.00020404221,0.00026007212,0.000039795374,0.00021641045],"domain_scores_gemma":[0.9997375,0.0000073172073,0.00004501215,0.00013716232,0.0000017526523,0.00007124318],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006377545,0.00018383433,0.00014965521,0.000065544074,0.00019992188,0.000024363257,0.00006912474,0.00017264078,0.00020056021],"category_scores_gemma":[7.5492e-7,0.0001767788,0.000040034858,0.000035040328,0.00004106976,0.00009315804,0.000028574286,0.0001645333,0.00016758],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000076173355,0.000051667164,0.0000030149529,0.00000318183,0.000026246831,0.0000013178042,0.00007145856,0.00029309816,0.9947508,0.0028169265,0.00011103671,0.0018636493],"study_design_scores_gemma":[0.0005992239,0.00009007214,0.0029934663,0.000005191009,0.000056162193,0.00022401632,0.00035675176,0.0002088839,0.9886683,0.002412337,0.004031738,0.00035386323],"about_ca_topic_score_codex":0.000008194507,"about_ca_topic_score_gemma":0.0000052396886,"teacher_disagreement_score":0.00608249,"about_ca_system_score_codex":0.00007294149,"about_ca_system_score_gemma":0.00000346548,"threshold_uncertainty_score":0.720883},"labels":[],"label_agreement":null},{"id":"W2024309140","doi":"10.1128/aem.68.9.4253-4258.2002","title":"Purification and Immunogenicity of a Recombinant<i>Bordetella pertussis</i>S1S3FHA Fusion Protein Expressed by<i>Streptococcus gordonii</i>","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Medical Research Council; IWK Health Centre","keywords":"Bordetella pertussis; Immunogenicity; Fusion protein; Filamentous haemagglutinin adhesin; Microbiology; Biology; Monoclonal antibody; Pertussis toxin; Polyclonal antibodies; Virology; Protein subunit; Protein A/G; Molecular biology; Titer; Antibody; Pertactin; Recombinant DNA; G protein; Biochemistry; Bacteria; Virus; Immunology; Receptor","score_opus":0.0055279446112270125,"score_gpt":0.16506275189991904,"score_spread":0.15953480728869202,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024309140","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99485683,0.0038681806,0.000017345938,0.000137564,0.00016539682,0.00050529494,0.00014517938,0.000028036231,0.00027615178],"genre_scores_gemma":[0.99655694,0.0021312744,0.000044923025,0.0000500074,0.000012605786,0.00009113789,0.00035693386,0.000016152151,0.00074000104],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989158,0.00008333306,0.0003355535,0.0003989371,0.0000076668475,0.00025873017],"domain_scores_gemma":[0.99954385,0.000040755694,0.00016421765,0.00022127679,0.000004732677,0.000025151241],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000087501845,0.00021836208,0.00031385387,0.000051083913,0.0002028016,0.000009717582,0.00009566099,0.00030753965,0.00084773905],"category_scores_gemma":[0.0000042134316,0.00019014534,0.000047356894,0.000046650468,0.00037927896,0.000046609006,0.00013219545,0.0001590222,0.000068126734],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006498383,0.0002687356,0.001249393,0.000016410557,0.00005611587,1.4389565e-7,0.00014792656,1.2992669e-7,0.9849289,0.0000662053,0.0009964777,0.0122045735],"study_design_scores_gemma":[0.0016576052,0.00023570366,0.0032409974,0.000013523109,0.000034602093,0.00004669829,0.00015998005,0.0000020012847,0.90612876,0.000056026558,0.08819483,0.00022924601],"about_ca_topic_score_codex":0.000060347073,"about_ca_topic_score_gemma":0.0000031440916,"teacher_disagreement_score":0.087198354,"about_ca_system_score_codex":0.000020147898,"about_ca_system_score_gemma":0.0000029513321,"threshold_uncertainty_score":0.9282148},"labels":[],"label_agreement":null},{"id":"W2024562921","doi":"10.1128/aem.00093-10","title":"Lactococcal Abortive Infection Protein AbiV Interacts Directly with the Phage Protein SaV and Prevents Translation of Phage Proteins","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Danmarks Tekniske Universitet; Fonds Québécois de la Recherche sur la Nature et les Technologies; Agence Nationale de la Recherche","keywords":"Lytic cycle; Biology; Phagemid; Molecular biology; Bacteriophage; Lactococcus lactis; Protein biosynthesis; Gene; Transcription (linguistics); Microbiology; Virology; Escherichia coli; Genetics; Bacteria; Virus","score_opus":0.0034434409204374353,"score_gpt":0.1870245089124865,"score_spread":0.18358106799204907,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024562921","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967793,0.000023117935,0.00019449835,0.00014077955,0.000033807522,0.0018506469,0.00006075423,0.00001787626,0.0008992201],"genre_scores_gemma":[0.9985285,0.000017293052,0.0007595454,0.0000651725,0.00002502788,0.0002748234,0.000056723242,0.00001886301,0.00025405144],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991218,0.000051762934,0.00020488749,0.00035522593,0.000045152523,0.00022121053],"domain_scores_gemma":[0.9996001,0.000025301728,0.0001566947,0.00015738801,0.0000015692544,0.000058925092],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011661286,0.0002047076,0.00018716167,0.000026467866,0.00016648302,0.00002093846,0.00008720012,0.0001236988,0.00057105266],"category_scores_gemma":[0.0000023765663,0.00014039814,0.000034148452,0.000060386556,0.0006762358,0.00016346184,0.0001073528,0.00032335805,0.00002943681],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000109879344,0.00016599371,0.0007440946,0.00001568434,0.00002606927,0.0000012839295,0.0005717423,0.0000025706172,0.984386,0.000026114061,0.000011710867,0.013938841],"study_design_scores_gemma":[0.000814364,0.00028749253,0.067853004,0.000026593216,0.000034441135,0.00008485915,0.000120480276,0.000011449876,0.92072815,0.000038915492,0.009782949,0.00021732906],"about_ca_topic_score_codex":0.000265988,"about_ca_topic_score_gemma":0.0004942677,"teacher_disagreement_score":0.06710891,"about_ca_system_score_codex":0.00003491542,"about_ca_system_score_gemma":0.000004684408,"threshold_uncertainty_score":0.6252626},"labels":[],"label_agreement":null},{"id":"W2024625419","doi":"10.1128/aem.03868-14","title":"Enhancing the Detection of Giardia duodenalis Cysts in Foods by Inertial Microfluidic Separation","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Health Canada","funders":"National Research Council Canada; Health Canada","keywords":"Microfluidics; Giardia; Chromatography; Detection limit; Suspension (topology); Microfluidic chip; Materials science; Biology; Chemistry; Microbiology; Nanotechnology; Mathematics","score_opus":0.005472653710371971,"score_gpt":0.20801562794330708,"score_spread":0.2025429742329351,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024625419","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99191934,0.0065468485,0.00063716713,0.00003447443,0.00025862295,0.00018929855,0.00006898303,0.000010498866,0.00033473797],"genre_scores_gemma":[0.9990332,0.0004128796,0.00001217339,0.00012641322,0.000019687235,0.000030404726,0.00029725616,0.000007913238,0.000060052538],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992269,0.000099246885,0.00026260724,0.00019570459,0.000011596393,0.0002039138],"domain_scores_gemma":[0.9996737,0.0001076817,0.000079919744,0.00011716351,0.0000040616837,0.000017433626],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020529346,0.00012584432,0.00019423454,0.000052466297,0.00007596764,0.0000039073147,0.00006475926,0.00021479561,0.000027563337],"category_scores_gemma":[0.000014847816,0.00009869139,0.000028738516,0.0000495116,0.00032996002,0.000029242985,0.000060902126,0.00015621186,0.00007398786],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006182169,0.000078476834,0.0014443245,0.0000032973817,0.0000310073,4.978903e-7,0.00041439658,0.0000053002746,0.9959855,0.00007466616,0.00062787713,0.0012728185],"study_design_scores_gemma":[0.0013462974,0.0001394827,0.003966644,0.000004948141,0.000026696362,0.000118516706,0.0005596386,0.0000013912883,0.9801193,0.00007398477,0.013528924,0.00011419615],"about_ca_topic_score_codex":0.00014572959,"about_ca_topic_score_gemma":0.000048634614,"teacher_disagreement_score":0.015866237,"about_ca_system_score_codex":0.000055938235,"about_ca_system_score_gemma":0.000013709537,"threshold_uncertainty_score":0.4024518},"labels":[],"label_agreement":null},{"id":"W2024769143","doi":"10.1128/aem.07227-11","title":"Small-Molecule Modulators of Listeria monocytogenes Biofilm Development","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Vedecká Grantová Agentúra MŠVVaŠ SR a SAV; Agilent Technologies","keywords":"Biofilm; Listeria monocytogenes; Listeria; Microbiology; Bacteria; Chemistry; Small molecule; Quorum sensing; Biochemistry; Biology","score_opus":0.01781563594381991,"score_gpt":0.17743474771976953,"score_spread":0.15961911177594962,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024769143","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989271,0.00023903721,0.000048399786,0.0000039800707,0.00007797343,0.00011326986,0.000033370525,0.0000057625903,0.0005510876],"genre_scores_gemma":[0.9958827,0.00010621997,0.0034457042,0.00011597087,0.0000334177,0.0000062757626,0.00033542005,0.000016887194,0.000057406778],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99925387,0.000016441707,0.00020592369,0.00030639744,0.000015097704,0.0002022463],"domain_scores_gemma":[0.99969953,0.0000021890935,0.00007932809,0.00016406574,0.0000024931687,0.00005238104],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000049639977,0.00016060751,0.00016359986,0.00002597594,0.000054883498,0.000003655582,0.00008378158,0.00017032279,0.000042423482],"category_scores_gemma":[9.809575e-7,0.00014904902,0.000035042525,0.000017766533,0.00020855725,0.0000013453038,0.0001899288,0.00003527125,0.00000918684],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008087763,0.000056259298,0.0021054922,0.0000081958815,0.00004641111,8.5967355e-7,0.00014296295,2.8692932e-7,0.9949478,0.00004681902,0.000017791148,0.0025462343],"study_design_scores_gemma":[0.00031945945,0.00011471917,0.008692834,0.0000032036207,0.0000110651845,0.000030420557,0.00013453791,5.061528e-7,0.98538685,0.0000051248026,0.0051231766,0.00017810536],"about_ca_topic_score_codex":0.000015198372,"about_ca_topic_score_gemma":0.0000071338272,"teacher_disagreement_score":0.009560962,"about_ca_system_score_codex":0.000007769653,"about_ca_system_score_gemma":0.000011526492,"threshold_uncertainty_score":0.6078043},"labels":[],"label_agreement":null},{"id":"W2024812064","doi":"10.1128/aem.67.3.1035-1043.2001","title":"Identification of <i>Bacillus thuringiensis</i> subsp. <i>kurstaki</i> Strain HD1-Like Bacteria from Environmental and Human Samples after Aerial Spraying of Victoria, British Columbia, Canada, with Foray 48B","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect Resistance and Genetics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Victoria","funders":"","keywords":"Bacillus thuringiensis; Lymantria dispar; Bacteria; Aerial application; Biology; Veterinary medicine; Strain (injury); Microbiology; Population; Botany; Larva; Ecology; Genetics; Pesticide","score_opus":0.0022673837241747683,"score_gpt":0.1482590015411683,"score_spread":0.14599161781699355,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024812064","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99626565,0.0006571649,0.000034153953,0.000004877022,0.00007680774,0.00020379416,0.0027263993,0.0000025626136,0.000028573359],"genre_scores_gemma":[0.9972419,0.00048032578,0.00017881658,0.00010023346,0.00008168773,0.000018935005,0.0017848469,0.00002184619,0.00009139109],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99896836,0.000027068469,0.00030808116,0.00040518257,0.00005951587,0.0002317998],"domain_scores_gemma":[0.9995559,0.000009844427,0.00016921845,0.00020536248,0.0000035008047,0.000056207973],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000054945114,0.0001556628,0.0002392499,0.0000120274635,0.00009426823,0.000023379302,0.0000892725,0.00014990028,0.00008025742],"category_scores_gemma":[8.427351e-7,0.0002014941,0.00002962892,0.000017052293,0.00041962924,0.000005104299,0.000097925935,0.000058437312,5.163222e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013664001,0.00005737745,0.06966885,0.000014019672,0.00006533678,0.0000048782995,0.00006118234,0.0000020630061,0.9293408,0.0000015721604,0.00007261507,0.0005746656],"study_design_scores_gemma":[0.0014490373,0.00026268157,0.44129553,0.000015445972,0.00007363025,0.00007591119,0.0005408043,3.3460654e-7,0.5424535,0.00003104691,0.013446807,0.00035522104],"about_ca_topic_score_codex":0.032199685,"about_ca_topic_score_gemma":0.32324672,"teacher_disagreement_score":0.38688725,"about_ca_system_score_codex":0.000029829102,"about_ca_system_score_gemma":0.00002530544,"threshold_uncertainty_score":0.97424495},"labels":[],"label_agreement":null},{"id":"W2025659700","doi":"10.1128/aem.69.3.1871-1874.2003","title":"Biodegradation of the Nitramine Explosive CL-20","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pesticide and Herbicide Environmental Studies","field":"Environmental Science","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"","keywords":"Microcosm; Biodegradation; Strain (injury); Incubation; Carbon source; Explosive material; Nitrogen; Chemistry; Soil water; Bacteria; Carbon fibers; Environmental chemistry; Microbiology; Biology; Materials science; Organic chemistry; Biochemistry; Ecology","score_opus":0.0052533796877465115,"score_gpt":0.1606752256279772,"score_spread":0.1554218459402307,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2025659700","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99241626,0.00022329108,0.000055906192,0.000084558495,0.00005277983,0.0002235914,0.000042786658,0.000008181878,0.0068926383],"genre_scores_gemma":[0.9988057,0.00014629833,0.00035529057,0.0003312292,0.000008627884,0.000023434915,0.000032491134,0.000011001077,0.00028595413],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991814,0.00004495151,0.00020443439,0.0002827885,0.00006388091,0.00022254593],"domain_scores_gemma":[0.99963355,0.000038319948,0.00009821679,0.00018769423,3.0965884e-7,0.000041912157],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000078802885,0.00016412436,0.00017336232,0.00001202423,0.00016512703,0.0000037354164,0.00012726767,0.000079241516,0.0015129455],"category_scores_gemma":[0.000004649612,0.000116368145,0.000045753095,0.00005833407,0.00092384557,0.000040694358,0.00022346039,0.00009784922,0.00013145109],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000062450154,0.00007323608,0.072744355,0.0000027819954,0.000014806403,4.220433e-7,0.0001533732,0.000033572647,0.9254253,0.00032033236,0.0002784438,0.00094711035],"study_design_scores_gemma":[0.00066236494,0.00009047022,0.11170948,0.000006089007,0.00004997548,0.000051231684,0.0009184772,0.000005956614,0.8514656,0.001379493,0.033381246,0.0002796515],"about_ca_topic_score_codex":0.000016160857,"about_ca_topic_score_gemma":0.000024874505,"teacher_disagreement_score":0.07395976,"about_ca_system_score_codex":0.00007524287,"about_ca_system_score_gemma":0.0000018344596,"threshold_uncertainty_score":0.9993998},"labels":[],"label_agreement":null},{"id":"W2025771184","doi":"10.1128/aem.72.4.2627-2636.2006","title":"Very Low Ethanol Concentrations Affect the Viability and Growth Recovery in Post-Stationary-Phase <i>Staphylococcus aureus</i> Populations","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Centre for Applied Research in Cancer Control","keywords":"Staphylococcus aureus; Catabolism; Amino acid; Ethanol; Proline; Biochemistry; Metabolite; Bacterial growth; Viability assay; Growth medium; Bacteria; Arginine; Chemically defined medium; Biology; Metabolism; Ornithine; Glutamine; Microbiology; Chemistry; In vitro","score_opus":0.006308833502682255,"score_gpt":0.2266822415416471,"score_spread":0.22037340803896485,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2025771184","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964669,0.00045749996,0.00019386175,0.00089894974,0.00006984258,0.0009427626,0.0004742343,0.00002252591,0.000473425],"genre_scores_gemma":[0.9973554,0.00013579421,0.00038547322,0.00087626197,0.000059132602,0.0000653288,0.001029986,0.000017730777,0.000074873366],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99888664,0.000065746324,0.00031139827,0.00039498304,0.000049337825,0.00029188622],"domain_scores_gemma":[0.9994765,0.00017580425,0.000085544394,0.00019812067,0.000007674195,0.00005636506],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013059116,0.00020396398,0.0002634664,0.0000638458,0.00017864356,0.00001657999,0.00006180497,0.00015547649,0.00005952531],"category_scores_gemma":[0.000016069105,0.00016340376,0.000052336876,0.00009347209,0.0007062284,0.000060495015,0.00006533809,0.00021500896,0.000013035261],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023134278,0.0003272232,0.04932924,0.000028899034,0.000019595314,0.000008737739,0.00009960985,0.000022547842,0.94787884,0.0008527542,0.000570781,0.00063040364],"study_design_scores_gemma":[0.0067451987,0.00051761005,0.87814945,0.00005184797,0.0001595245,0.00011699549,0.00070782687,0.000062952386,0.10654339,0.0034023626,0.0029660682,0.00057676487],"about_ca_topic_score_codex":0.00014775437,"about_ca_topic_score_gemma":0.00013300763,"teacher_disagreement_score":0.8413355,"about_ca_system_score_codex":0.000110368295,"about_ca_system_score_gemma":0.00003319658,"threshold_uncertainty_score":0.6663412},"labels":[],"label_agreement":null},{"id":"W2025900852","doi":"10.1128/aem.70.4.2186-2192.2004","title":"Spatial and Temporal Distribution of Two Diazotrophic Bacteria in the Chesapeake Bay","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Maryland Center for Environmental Science; Natural Sciences and Engineering Research Council of Canada; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; National Science Foundation","keywords":"Bay; Estuary; Chesapeake bay; Biology; Transect; Diazotroph; Abundance (ecology); Salinity; Ecology; Oceanography; Bacteria; Nitrogen fixation; Genetics; Geology","score_opus":0.00468341443869257,"score_gpt":0.18032362724991916,"score_spread":0.17564021281122658,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2025900852","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992497,0.000037506383,0.000048543596,0.00017078195,0.00003097819,0.00018307049,0.00007305478,0.0000042001625,0.00020214226],"genre_scores_gemma":[0.99889123,0.000077975594,0.00008952599,0.00032226378,0.000014361577,0.000012224996,0.0005828571,0.0000049631676,0.0000045902616],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99930286,0.00010092919,0.00017399491,0.0002058936,0.00001984337,0.00019647043],"domain_scores_gemma":[0.9997189,0.000040754643,0.000063526255,0.00015033451,3.0755413e-7,0.000026183043],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016517768,0.00012442192,0.00017405624,0.0000126197465,0.00010821134,0.0000039163065,0.00014653074,0.00010888689,0.00036314156],"category_scores_gemma":[0.0000021489927,0.00009539078,0.000019970594,0.000039904542,0.0009543257,0.000030229232,0.00024015279,0.00018253562,0.0000358411],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042468564,0.00012025889,0.07303954,0.0000038268013,0.0000058399114,0.0000017228749,0.00048385563,0.00003364309,0.9251113,0.00039407506,0.000026736467,0.0007367228],"study_design_scores_gemma":[0.0015494028,0.00021342475,0.9816835,0.000004055591,0.000015095127,0.0000925531,0.000268158,0.0000045595743,0.0090525905,0.0035900846,0.0033444786,0.00018209204],"about_ca_topic_score_codex":0.0006358,"about_ca_topic_score_gemma":0.001201794,"teacher_disagreement_score":0.9160587,"about_ca_system_score_codex":0.00005084134,"about_ca_system_score_gemma":0.0000034445388,"threshold_uncertainty_score":0.39761454},"labels":[],"label_agreement":null},{"id":"W2026563404","doi":"10.1128/aem.69.1.483-489.2003","title":"Changes in Microbial Community Composition and Function during a Polyaromatic Hydrocarbon Phytoremediation Field Trial","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":315,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Biotechnology Research Institute","funders":"","keywords":"Rhizosphere; Phytoremediation; Mineralization (soil science); Bulk soil; Microbial population biology; Environmental chemistry; Soil microbiology; Biology; Microbial biodegradation; Soil contamination; Sphingomonas; Phenanthrene; Chemistry; Botany; Agronomy; Pseudomonas; Soil water; Microorganism; Bacteria; Ecology","score_opus":0.0057233490284467935,"score_gpt":0.17313205889062339,"score_spread":0.1674087098621766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2026563404","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998859,0.000028177308,0.000011292149,0.000083416744,0.0001221514,0.00039271213,0.0000149452235,0.000015547497,0.000472757],"genre_scores_gemma":[0.9991739,0.0000980944,0.00007958886,0.00047075422,0.000025352292,0.000013856,0.00010883096,0.000008627623,0.000021006515],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991772,0.00014057457,0.00018910287,0.00023815359,0.000039672803,0.00021525011],"domain_scores_gemma":[0.99971324,0.000046644043,0.000080569036,0.00010558616,3.914531e-7,0.00005356427],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018595114,0.00015378562,0.00016444041,0.000045121906,0.00015780097,0.000013251444,0.000053035543,0.0001521456,0.0003194777],"category_scores_gemma":[0.0000053219915,0.00014989504,0.000016553593,0.000060595754,0.00016945235,0.00005048642,0.000086065505,0.0001891362,0.000042128628],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00076237146,0.00012652279,0.011241837,0.000008532427,0.0000055118244,6.223873e-7,0.00028073357,0.000002566274,0.9868827,0.000011539884,0.00003369583,0.0006433997],"study_design_scores_gemma":[0.021245308,0.0006881841,0.13918875,0.00001734686,0.000035393015,0.000069384005,0.0006431527,0.00002070949,0.83615994,0.00022240501,0.001201074,0.00050835137],"about_ca_topic_score_codex":0.00008092824,"about_ca_topic_score_gemma":0.000343454,"teacher_disagreement_score":0.15072274,"about_ca_system_score_codex":0.000097116055,"about_ca_system_score_gemma":0.0000022002635,"threshold_uncertainty_score":0.6112542},"labels":[],"label_agreement":null},{"id":"W2027138946","doi":"10.1128/aem.68.9.4650-4652.2002","title":"Potential for Misidentification of a Spore-Forming <i>Paenibacillus polymyxa</i> Isolate as an Endophyte by Using Culture-Based Methods","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Paenibacillus polymyxa; Spore; Endophyte; Biology; Endospore; Microbiology; Strain (injury); Pinus contorta; Bacteria; Bacillus (shape); Germination; Botany; Anatomy","score_opus":0.0075580673230346024,"score_gpt":0.22464829232049857,"score_spread":0.21709022499746397,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027138946","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9845453,0.0018003692,0.011583669,0.000007814546,0.0000551718,0.0002553149,0.0016802145,0.000005831447,0.000066298184],"genre_scores_gemma":[0.9912567,0.00021671026,0.0057299156,0.00021768606,0.00004917593,0.000019961686,0.0023981226,0.000016940854,0.000094754214],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99919164,0.00003522431,0.00019305346,0.0003542062,0.00002391548,0.00020193927],"domain_scores_gemma":[0.999649,0.000007610288,0.00011129724,0.00015851945,0.000004259971,0.00006933773],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000073768904,0.00015616415,0.00016486704,0.000023528519,0.000097827884,0.000008896819,0.00008696574,0.00015773137,0.000028469594],"category_scores_gemma":[0.0000033015574,0.00014792764,0.00007370985,0.000019560484,0.00014438314,0.000004768963,0.000040046616,0.000037721267,0.0000024864792],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001332325,0.00012362598,0.0001252517,0.00001549519,0.00003230764,7.803796e-7,0.000025794601,0.000041354026,0.9960091,0.000014125549,0.00011870819,0.0033601853],"study_design_scores_gemma":[0.00089974934,0.0002657158,0.00015355746,0.000004016763,0.00007769081,0.00006550914,0.00010076225,0.0012757462,0.9902172,0.000033097083,0.0066873496,0.00021959557],"about_ca_topic_score_codex":0.000008239792,"about_ca_topic_score_gemma":7.2243444e-7,"teacher_disagreement_score":0.006711417,"about_ca_system_score_codex":0.000009505887,"about_ca_system_score_gemma":0.000005570523,"threshold_uncertainty_score":0.6032314},"labels":[],"label_agreement":null},{"id":"W2027838529","doi":"10.1128/aem.70.4.2052-2060.2004","title":"Identification of the Bacterial Community of Maple Sap by Using Amplified Ribosomal DNA (rDNA) Restriction Analysis and rDNA Sequencing","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Identification and Quantification in Food","field":"Biochemistry, Genetics and Molecular Biology","cited_by":149,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Agriculture and Agri-Food Canada","funders":"","keywords":"Amplified Ribosomal DNA Restriction Analysis; Biology; Ribosomal DNA; Ribosomal RNA; Maple; 16S ribosomal RNA; Ralstonia; Proteobacteria; Pseudomonas; Microbiology; Restriction fragment length polymorphism; Botany; Bacteria; Genetics; Polymerase chain reaction; Phylogenetic tree; Gene","score_opus":0.009772227102941405,"score_gpt":0.20678409792224525,"score_spread":0.19701187081930385,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027838529","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99805593,0.000079996666,0.0013605509,0.000026256212,0.000058443577,0.0001436259,0.00024780602,0.0000029054804,0.000024505742],"genre_scores_gemma":[0.9987532,0.00014170608,0.00010619956,0.00002753245,0.000014689967,0.000006174106,0.0009189298,0.0000068036547,0.000024758801],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993014,0.00008273851,0.00029607082,0.00019538341,0.00003330701,0.000091114445],"domain_scores_gemma":[0.9994152,0.000009931641,0.00025789544,0.00028686898,0.000007854068,0.000022254562],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016364345,0.000091430025,0.00013590214,0.000044874534,0.00017058256,0.000009043343,0.00011104495,0.00012258971,0.0000075465377],"category_scores_gemma":[0.000007724925,0.000082443345,0.00004872294,0.000093849056,0.0003780577,0.000004301641,0.00010263077,0.00007077261,9.864431e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002406515,0.00005330667,0.0020490747,0.000012303833,0.000086252265,1.2033355e-8,0.0001137877,0.000036937254,0.9973518,0.00018079185,0.000015070871,0.00007654812],"study_design_scores_gemma":[0.00036370647,0.00003043878,0.022701567,0.0000028010845,0.0001091131,0.00000633696,0.0004910066,0.00000810049,0.9758909,0.0000495251,0.00026752678,0.00007901882],"about_ca_topic_score_codex":0.00009330374,"about_ca_topic_score_gemma":0.000021091195,"teacher_disagreement_score":0.02146099,"about_ca_system_score_codex":0.000027776503,"about_ca_system_score_gemma":0.000013781594,"threshold_uncertainty_score":0.3361942},"labels":[],"label_agreement":null},{"id":"W2027858465","doi":"10.1128/aem.01493-12","title":"The Bacterial Surface Layer Provides Protection against Antimicrobial Peptides","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Antimicrobial; Antimicrobial peptides; Microbiology; Bacteria; Biology; Mechanism (biology); Layer (electronics); Computational biology; Chemistry; Nanotechnology; Materials science; Genetics","score_opus":0.008683268901515336,"score_gpt":0.17874961092462702,"score_spread":0.1700663420231117,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027858465","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99640024,0.0011240265,0.000046892572,0.00024071716,0.00086392334,0.0005243255,0.00012905209,0.00006478969,0.0006060647],"genre_scores_gemma":[0.99694884,0.00076583645,0.00008208919,0.00034020466,0.00018461062,0.000029816005,0.00038293307,0.000032958174,0.001232702],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984722,0.00012155284,0.0002944812,0.0003443977,0.000016077398,0.00075127213],"domain_scores_gemma":[0.9994944,0.000097740965,0.0001464364,0.00021671772,0.0000040325103,0.000040675328],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002414883,0.00031387544,0.00028830374,0.00002971927,0.00085389044,0.000045087738,0.00017023158,0.00031306612,0.00010138619],"category_scores_gemma":[0.0000053269223,0.0002241601,0.00008426036,0.000039220904,0.0010887686,0.00014873914,0.0001831073,0.00032514232,0.0004906283],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017242193,0.000117774376,0.0009672373,0.000011223108,0.00009945263,3.8867753e-7,0.0002957109,0.000004104928,0.98995984,0.00030617238,0.0033812518,0.004684431],"study_design_scores_gemma":[0.00087319483,0.00007875298,0.0015977242,0.00001103883,0.000036592883,0.00018720228,0.00079727964,9.3736963e-7,0.8247792,0.000030686908,0.17125015,0.00035721762],"about_ca_topic_score_codex":0.000033697186,"about_ca_topic_score_gemma":0.000011907707,"teacher_disagreement_score":0.1678689,"about_ca_system_score_codex":0.00005117653,"about_ca_system_score_gemma":0.000012378726,"threshold_uncertainty_score":0.9140983},"labels":[],"label_agreement":null},{"id":"W2028298716","doi":"10.1128/aem.03147-14","title":"Erratum for Maheux et al., Abilities of the mCP Agar Method and CRENAME Alpha Toxin-Specific Real-Time PCR Assay To Detect Clostridium perfringens Spores in Drinking Water","year":2014,"lang":"en","type":"erratum","venue":"Applied and Environmental Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministère des Ressources naturelles et des Forêts; Université Laval","funders":"","keywords":"Clostridium perfringens; Microbiology; Spore; Agar; Clostridiaceae; Clostridium; Toxin; Alpha (finance); Biology; Chemistry; Bacteria; Medicine; Genetics","score_opus":0.007906284896915756,"score_gpt":0.22187688043714357,"score_spread":0.21397059554022782,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2028298716","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99469906,0.0004587204,0.0003182952,0.0007982323,0.001321551,0.0010098792,0.00036796584,0.000013334147,0.001012943],"genre_scores_gemma":[0.9807966,0.0013649275,0.003542801,0.0012173771,0.0003100695,0.00014529639,0.0037656722,0.000091279566,0.008765983],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981682,0.0001953628,0.00044490056,0.00078986806,0.000046676243,0.00035503766],"domain_scores_gemma":[0.9992466,0.0000730327,0.00015057893,0.00045943374,0.000010194175,0.00006017674],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007161049,0.00032823175,0.00045410104,0.000063802305,0.00010554636,0.00003106292,0.0002345866,0.0004603541,0.000041902855],"category_scores_gemma":[0.000028785355,0.00024816187,0.000103297345,0.000027194434,0.0002849203,0.0000033070123,0.00045723649,0.00024865931,0.0000054800316],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000077599376,0.00002715947,0.0002419898,0.000051369843,0.00003344391,2.2219119e-7,0.00023480014,0.0000036092852,0.95796424,0.000020836138,0.040427104,0.0009175998],"study_design_scores_gemma":[0.0004835978,0.00017483605,0.004080486,0.000043562828,0.000029453726,0.000023525412,0.0001571571,0.000006361317,0.49159434,0.00017555438,0.50285375,0.0003773908],"about_ca_topic_score_codex":0.00003313831,"about_ca_topic_score_gemma":0.000087963504,"teacher_disagreement_score":0.46636993,"about_ca_system_score_codex":0.000039677805,"about_ca_system_score_gemma":0.000020948335,"threshold_uncertainty_score":0.9999971},"labels":[],"label_agreement":null},{"id":"W2028523883","doi":"10.1128/aem.02846-09","title":"Searching for Mesophilic <i>Thermotogales</i> Bacteria: “Mesotogas” in the Wild","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; University of Alberta","funders":"","keywords":"Bacteria; Microbiology; Mesophile; Enterobacteriaceae; Biology; Escherichia coli; Computational biology; Genetics; Gene","score_opus":0.004991346019757046,"score_gpt":0.19196043277105168,"score_spread":0.18696908675129464,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2028523883","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970233,0.00001590542,0.000019625168,0.00042149203,0.000102472535,0.00055458717,0.000048401565,0.000011138032,0.0018030875],"genre_scores_gemma":[0.9964203,0.000030940435,0.00044256265,0.0026487429,0.0000496985,0.000100822275,0.00024920446,0.000013138179,0.000044539334],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99900633,0.000117991905,0.00017185028,0.0003108827,0.000023773597,0.00036914714],"domain_scores_gemma":[0.9993705,0.00025377984,0.0000500205,0.00028458383,3.9124754e-7,0.000040735635],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00041332282,0.00016770868,0.00018400983,0.000024250397,0.00028566888,0.000011184103,0.00038946525,0.00020568095,0.0015506772],"category_scores_gemma":[0.000006053564,0.00012747741,0.000041864314,0.000046825135,0.00082150364,0.000041196636,0.00029670447,0.00050906406,0.00012216419],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004511283,0.000100236146,0.004258092,0.0000035198673,0.000006427555,0.0000011964557,0.0006270275,0.0000062285208,0.99041665,0.0007704977,0.0009892791,0.0027757164],"study_design_scores_gemma":[0.004563119,0.000701634,0.31049266,0.000008388233,0.000063724445,0.00062413444,0.0021270565,0.00009477068,0.043813094,0.018505845,0.61781293,0.0011926268],"about_ca_topic_score_codex":0.00008258659,"about_ca_topic_score_gemma":0.00068222784,"teacher_disagreement_score":0.9466036,"about_ca_system_score_codex":0.00002018521,"about_ca_system_score_gemma":0.0000036096824,"threshold_uncertainty_score":0.99936205},"labels":[],"label_agreement":null},{"id":"W2028718494","doi":"10.1128/aem.00625-08","title":"Relative Importance of <i>Ixodes ricinus</i> and <i>Ixodes trianguliceps</i> as Vectors for <i>Anaplasma phagocytophilum</i> and <i>Babesia microti</i> in Field Vole ( <i>Microtus agrestis</i> ) Populations","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":134,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Wellcome Trust","keywords":"Ixodes ricinus; Anaplasma phagocytophilum; Biology; Microtus; Ricinus; Tick; Ixodes; Babesia; Zoology; Nymph; Enzootic; Veterinary medicine; Ecology; Borrelia burgdorferi; Virology; Botany","score_opus":0.009851480336542809,"score_gpt":0.21103005872704392,"score_spread":0.2011785783905011,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2028718494","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9872654,0.010453054,0.000068765265,0.00022776195,0.00015268876,0.00096030504,0.00055132766,0.000041114454,0.00027957317],"genre_scores_gemma":[0.99632215,0.001267355,0.00031251373,0.0011656946,0.00002926431,0.00012703487,0.00049299747,0.000039586757,0.00024340897],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980198,0.00011015336,0.0005812563,0.00072044425,0.000024971469,0.00054336636],"domain_scores_gemma":[0.9989371,0.0004586062,0.0002747098,0.0002485815,0.000010573726,0.000070477174],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00015113967,0.00041358717,0.0006887144,0.00014979926,0.00033155986,0.0000086743175,0.00013202943,0.00043731972,0.000056189194],"category_scores_gemma":[0.000041507665,0.00040790855,0.00009062701,0.00011843962,0.0013370097,0.00011963234,0.00018051769,0.00028959502,0.000020267782],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040268208,0.00023418019,0.12950532,0.00004283919,0.00012153416,0.000011396507,0.00054953434,0.000005162426,0.8663099,0.0008965413,0.0013160729,0.0006048822],"study_design_scores_gemma":[0.017134644,0.0019522753,0.15649472,0.00011738397,0.0004822911,0.0043261214,0.0016263082,0.0000070732417,0.7868389,0.003552913,0.025759924,0.001707434],"about_ca_topic_score_codex":0.0002546039,"about_ca_topic_score_gemma":0.00024398301,"teacher_disagreement_score":0.07947095,"about_ca_system_score_codex":0.00006128967,"about_ca_system_score_gemma":0.000037074984,"threshold_uncertainty_score":0.9998373},"labels":[],"label_agreement":null},{"id":"W2029265447","doi":"10.1128/aem.05734-11","title":"Genetic Markers for Rapid PCR-Based Identification of Gull, Canada Goose, Duck, and Chicken Fecal Contamination in Water","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fecal contamination and water quality","field":"Environmental Science","cited_by":183,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Goose; Biology; Feces; Contamination; Identification (biology); Zoology; Ecology","score_opus":0.007936273090650835,"score_gpt":0.1666413025094996,"score_spread":0.15870502941884876,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029265447","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99890554,0.00002826623,0.00028112525,0.0000695922,0.000040458628,0.00037322042,0.000050560306,0.0000038967137,0.0002473698],"genre_scores_gemma":[0.9991697,0.00001478273,0.00027502363,0.00023574362,0.0000044801477,0.000044284345,0.00016765264,0.000007560609,0.00008075271],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991879,0.000048282327,0.00026938383,0.00027714338,0.00004000152,0.00017731226],"domain_scores_gemma":[0.99976116,0.00003153508,0.00006691661,0.000096787866,0.0000010955891,0.000042472653],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021025565,0.000109406436,0.00013944696,0.00002626374,0.0000493842,0.0000039380334,0.00006933564,0.000075578995,0.0003391986],"category_scores_gemma":[0.0000027669837,0.000091553906,0.000015600153,0.000021434556,0.0002823203,0.000034573546,0.0000616762,0.000046920926,0.000008133619],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011554043,0.000081340084,0.054866906,0.000020437912,0.0000065137842,9.2415576e-7,0.00045849176,0.000010540568,0.9342058,0.000056271216,0.00008755668,0.0100897],"study_design_scores_gemma":[0.0008667954,0.00007181503,0.7431923,0.0000022219863,0.000010285984,0.0000041324383,0.0002188436,0.00015395989,0.25415918,0.00011969586,0.0010745361,0.00012618629],"about_ca_topic_score_codex":0.013404033,"about_ca_topic_score_gemma":0.017697232,"teacher_disagreement_score":0.68832546,"about_ca_system_score_codex":0.00010474912,"about_ca_system_score_gemma":0.000005684523,"threshold_uncertainty_score":0.9931658},"labels":[],"label_agreement":null},{"id":"W2029363700","doi":"10.1128/aem.02389-14","title":"Impact of Fertilizing with Raw or Anaerobically Digested Sewage Sludge on the Abundance of Antibiotic-Resistant Coliforms, Antibiotic Resistance Genes, and Pathogenic Bacteria in Soil and on Vegetables at Harvest","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":185,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Agriculture and Agri-Food Canada","funders":"","keywords":"Biosolids; Biology; Antibiotic resistance; Sewage; Sewage sludge; Pathogenic bacteria; Biotechnology; Bacteria; Fecal coliform; Antibiotics; Coliform bacteria; Agronomy; Veterinary medicine; Food science; Microbiology; Environmental science; Ecology; Water quality; Environmental engineering","score_opus":0.01017485594576279,"score_gpt":0.21391490710220898,"score_spread":0.2037400511564462,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029363700","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998743,0.00020939784,0.000004721765,0.00007247807,0.0000129804985,0.00036940878,0.00015311394,0.0000075212897,0.00042739825],"genre_scores_gemma":[0.99872595,0.00076146884,0.00012921783,0.00021652535,0.000006736814,0.0000019132588,0.000042108433,0.000025181836,0.00009089308],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984915,0.000085088286,0.00035137156,0.00054092257,0.00010250118,0.0004285806],"domain_scores_gemma":[0.9991899,0.00020399911,0.00018563616,0.0002740803,8.7825276e-7,0.00014550943],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021231038,0.00033431183,0.00044907836,0.000039368555,0.00014475556,0.000021417462,0.00015422482,0.00012474296,0.000105031875],"category_scores_gemma":[0.000010667608,0.0001932291,0.000039660743,0.000097691336,0.0017096609,0.00008193428,0.00028047565,0.00015871663,0.000015467787],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009805671,0.00024441938,0.15145575,0.000045193938,0.000029732975,0.0000058181527,0.00008760898,0.00007866569,0.84595364,0.00007178682,0.000010620651,0.0010361994],"study_design_scores_gemma":[0.0011496719,0.00077617465,0.78781414,0.00010654814,0.00002622005,0.000028675522,0.00006879094,0.000032399195,0.20956446,0.000018850102,0.0001845872,0.00022948116],"about_ca_topic_score_codex":0.00006319955,"about_ca_topic_score_gemma":0.00023500952,"teacher_disagreement_score":0.6363892,"about_ca_system_score_codex":0.00013113963,"about_ca_system_score_gemma":0.000006277062,"threshold_uncertainty_score":0.7879654},"labels":[],"label_agreement":null},{"id":"W2029378609","doi":"10.1128/aem.00612-13","title":"Comparative Persistence of Subgroups of F-Specific RNA Phages in River Water","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"U.S. Department of Agriculture","keywords":"Persistence (discontinuity); RNA; Biology; Bacteriophage; Water source; Source tracking; Microbiology; Gene; Genetics; Escherichia coli; Environmental science","score_opus":0.010127834093192912,"score_gpt":0.1844519259385957,"score_spread":0.1743240918454028,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029378609","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971923,0.000067533416,0.000014399206,0.000032903663,0.000035695182,0.00020492681,0.00003203947,0.0000033651606,0.0024168082],"genre_scores_gemma":[0.99921423,0.00015859587,0.00037572454,0.00005520713,0.0000055901573,0.000015065196,0.000048973034,0.000005755814,0.000120864745],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99930847,0.00002257956,0.00022627943,0.00022878395,0.000023415298,0.00019050359],"domain_scores_gemma":[0.99976957,0.000021130292,0.00006369453,0.00011268413,9.068194e-7,0.00003202442],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000039343948,0.00011869751,0.0002327031,0.000033159868,0.000032842294,0.0000036700756,0.00010355145,0.00006685573,0.004472734],"category_scores_gemma":[2.2083407e-7,0.00009079129,0.000036663478,0.000034758592,0.00084948144,0.00008636515,0.00017699477,0.000086285145,0.00032983458],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014500093,0.000120171455,0.0027227378,0.000004303243,0.000009848516,5.045414e-7,0.0017997358,0.000019347202,0.9938634,0.000012467157,0.0001635662,0.0012693926],"study_design_scores_gemma":[0.0003609859,0.00006678881,0.19108982,0.0000055044657,0.0000062560493,0.000016183925,0.001091184,0.000006036202,0.80429024,0.00004742657,0.0029003392,0.00011922319],"about_ca_topic_score_codex":0.00031457032,"about_ca_topic_score_gemma":0.000023708642,"teacher_disagreement_score":0.18957318,"about_ca_system_score_codex":0.000045436405,"about_ca_system_score_gemma":7.384892e-7,"threshold_uncertainty_score":0.9964373},"labels":[],"label_agreement":null},{"id":"W2029930600","doi":"10.1128/aem.06354-11","title":"Metagenomic Analysis of Stress Genes in Microbial Mat Communities from Antarctica and the High Arctic","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":181,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; ArcticNet; Genome Canada","keywords":"Metagenomics; Biology; Arctic; Proteobacteria; Extreme environment; Psychrophile; Bacteroidetes; Actinobacteria; Microbial mat; Alphaproteobacteria; Ecology; Pyrosequencing; Gene; Cyanobacteria; Bacteria; Genetics; 16S ribosomal RNA","score_opus":0.008876147562398129,"score_gpt":0.16741908636740777,"score_spread":0.15854293880500964,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029930600","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988666,0.00028038668,0.0000139233125,0.00004313566,0.000036551577,0.00019470075,0.00033099792,0.0000049856653,0.00022867596],"genre_scores_gemma":[0.99780166,0.0007726501,0.00038422874,0.00039091706,0.0000064512183,0.000015566871,0.0006047425,0.000008993567,0.000014761084],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988949,0.0003348059,0.00028893817,0.00022781339,0.000020467833,0.0002331061],"domain_scores_gemma":[0.9992503,0.00027263252,0.00012038347,0.0003222526,7.6306463e-7,0.000033685297],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00020734135,0.00018114636,0.00049368705,0.00007396154,0.0001595444,0.0000050205217,0.00029677423,0.00014503773,0.0042898064],"category_scores_gemma":[0.0000013496299,0.00013820478,0.000060337785,0.000104119645,0.003013612,0.000036509624,0.0007054987,0.00023244084,0.000027174905],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004002447,0.00018721468,0.23106635,0.000007325589,0.00050728925,0.000001562368,0.0064715394,0.00008342665,0.7600362,0.00066828047,0.000016914564,0.00055367383],"study_design_scores_gemma":[0.002080856,0.00009506641,0.9720969,0.0000057026978,0.0007663643,0.000015523863,0.0036599163,0.00005496109,0.017951947,0.0023490556,0.0006221138,0.00030157698],"about_ca_topic_score_codex":0.022090659,"about_ca_topic_score_gemma":0.013208969,"teacher_disagreement_score":0.74208426,"about_ca_system_score_codex":0.000041025196,"about_ca_system_score_gemma":0.0000024236388,"threshold_uncertainty_score":0.9996996},"labels":[],"label_agreement":null},{"id":"W2030385957","doi":"10.1128/aem.02667-08","title":"Metabolic Engineering of <i>Escherichia coli</i> for Enhanced Production of ( <i>R</i> )- and ( <i>S</i> )-3-Hydroxybutyrate","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":122,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; National Science Foundation","keywords":"Escherichia coli; Thiolase; Metabolic engineering; Biology; Recombinant DNA; NAD+ kinase; Biochemistry; Enzyme; Cofactor; Enantiopure drug; Alcohol dehydrogenase; Dehydrogenase; Enantioselective synthesis","score_opus":0.002578193898417755,"score_gpt":0.1684082682273244,"score_spread":0.16583007432890665,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2030385957","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99694294,0.0017711265,0.0008511365,0.000031550157,0.00009572198,0.00023787242,0.000041116633,0.000006316405,0.000022222139],"genre_scores_gemma":[0.99675393,0.0010696021,0.0018026899,0.00007645358,0.00010190552,0.00001235657,0.00012348995,0.000010462351,0.000049101123],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993954,0.00000703561,0.00018363554,0.00026788597,0.00001608476,0.00012999753],"domain_scores_gemma":[0.9997645,0.0000026257003,0.000078621786,0.00012110812,0.0000054938837,0.000027634711],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008527156,0.0001284102,0.00020923764,0.00002703353,0.000023308503,0.0000019900856,0.000042882442,0.00010058113,8.749073e-7],"category_scores_gemma":[0.000007441506,0.00012380812,0.00003277157,0.00003267448,0.00009068622,0.000002841633,0.000026339796,0.000039649676,2.0116268e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006365817,0.000044995195,0.000020974532,0.000031971944,0.000028671402,1.923043e-8,0.0000300263,0.00017287635,0.9975669,0.0001745944,0.000035413887,0.0018299104],"study_design_scores_gemma":[0.00038521047,0.00017963654,0.00067702145,0.0000053813674,0.00003056475,0.000010502211,0.000022102917,0.0000066399143,0.99063325,0.000023580422,0.007907426,0.00011870442],"about_ca_topic_score_codex":0.0000016401234,"about_ca_topic_score_gemma":3.172225e-7,"teacher_disagreement_score":0.007872012,"about_ca_system_score_codex":0.0000025509123,"about_ca_system_score_gemma":0.000004295207,"threshold_uncertainty_score":0.5048748},"labels":[],"label_agreement":null},{"id":"W2030390368","doi":"10.1128/aem.00931-12","title":"Multilocus Sequence Typing Scheme for the Characterization of 936-Like Phages Infecting Lactococcus lactis","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Multilocus sequence typing; Biology; Genetics; Phylogenetic tree; Bacteriophage; Housekeeping gene; Locus (genetics); Computational biology; Gene; Genotype; Escherichia coli","score_opus":0.01380776130897941,"score_gpt":0.2286893364631476,"score_spread":0.2148815751541682,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2030390368","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980847,0.000081389335,0.0007929958,0.00006308174,0.00024011156,0.00045517873,0.000101701015,0.00001489981,0.00016590994],"genre_scores_gemma":[0.9985818,0.00015022197,0.00055328174,0.00027290653,0.00006227948,0.00007119104,0.00013720783,0.00001548448,0.00015560136],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992914,0.000024206745,0.00018703938,0.00019654536,0.000019885656,0.00028092845],"domain_scores_gemma":[0.99956566,0.000116411706,0.00013759825,0.00013360813,0.0000011455749,0.000045572397],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014469675,0.00013969393,0.00014097974,0.000016533455,0.00023651417,0.000010247905,0.00009755016,0.000085772306,0.00053950655],"category_scores_gemma":[0.0000051921083,0.00010767893,0.00004454909,0.00004058344,0.0002849396,0.00015614046,0.00016285421,0.00012241885,0.00006877273],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001888519,0.00006200898,0.010950747,0.000009005083,0.000018703911,5.325281e-8,0.0003543855,0.0000038692688,0.9758646,0.000016505966,0.000036916237,0.012664319],"study_design_scores_gemma":[0.000763604,0.0000859987,0.2980371,0.000014040619,0.00007066959,0.00009282338,0.0005751866,0.00010974218,0.56858104,0.00001238666,0.13129587,0.00036152345],"about_ca_topic_score_codex":0.00008199002,"about_ca_topic_score_gemma":0.000008521912,"teacher_disagreement_score":0.40728354,"about_ca_system_score_codex":0.00006494244,"about_ca_system_score_gemma":0.0000018839221,"threshold_uncertainty_score":0.59072185},"labels":[],"label_agreement":null},{"id":"W2030739272","doi":"10.1128/aem.02621-09","title":"Involvement of a Novel ABC Transporter and Monoalkyl Phthalate Ester Hydrolase in Phthalate Ester Catabolism by <i>Rhodococcus jostii</i> RHA1","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Effects and risks of endocrine disrupting chemicals","field":"Environmental Science","cited_by":104,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Genome British Columbia; Genome Canada","keywords":"Chemistry; Hydrolysis; Phthalate; Biodegradation; ATP-binding cassette transporter; Dibutyl phthalate; Hydrolase; Rhodococcus; Catabolism; Escherichia coli; Alkyl; Biochemistry; Complementation; Transporter; Organic chemistry; Metabolism; Stereochemistry; Gene; Enzyme; Mutant","score_opus":0.004512213228693262,"score_gpt":0.23215312541136077,"score_spread":0.2276409121826675,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2030739272","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981539,0.00040109784,0.000022248954,0.00016406957,0.000028204393,0.0003900977,0.00016363125,0.000012737154,0.000663968],"genre_scores_gemma":[0.9980503,0.00034755995,0.000391704,0.00086783175,0.00001463783,0.000021375596,0.00020652615,0.000018689174,0.00008137919],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99848294,0.00002163385,0.00039817143,0.0005854387,0.00006756434,0.00044425618],"domain_scores_gemma":[0.99949855,0.000044973014,0.000120535115,0.00021105874,6.5616933e-7,0.0001242231],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00013350052,0.0003120679,0.00039440754,0.000038104117,0.000059566028,0.0000116427,0.00014670395,0.00014041203,0.00012587322],"category_scores_gemma":[0.0000014944806,0.0002611229,0.00004964743,0.000053341057,0.00045354164,0.00009384188,0.00012935726,0.00019116826,0.000018637222],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000056254114,0.00039656597,0.035009436,0.000013896567,0.000012764316,0.000009614665,0.00038194348,0.00005461296,0.9602711,0.000008232464,0.00015705757,0.0036284833],"study_design_scores_gemma":[0.009727308,0.00060583715,0.2869946,0.00008035803,0.00012640996,0.00028716997,0.00033684194,0.0002408119,0.68907773,0.00038363994,0.010782691,0.0013566135],"about_ca_topic_score_codex":0.00015978384,"about_ca_topic_score_gemma":0.000013214587,"teacher_disagreement_score":0.27119341,"about_ca_system_score_codex":0.000044892877,"about_ca_system_score_gemma":0.0000020841358,"threshold_uncertainty_score":0.9999841},"labels":[],"label_agreement":null},{"id":"W2030808268","doi":"10.1128/aem.07661-11","title":"Characterization of Bioaerosols from Dairy Barns: Reconstructing the Puzzle of Occupational Respiratory Diseases by Using Molecular Approaches","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Indoor Air Quality and Microbial Exposure","field":"Environmental Science","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec","funders":"","keywords":"Bioaerosol; Indoor bioaerosol; Biology; Microbiome; Microbiology; 16S ribosomal RNA; Biotechnology; Veterinary medicine; Bacteria; Ecology; Medicine; Chemistry; Bioinformatics","score_opus":0.02422597056000903,"score_gpt":0.20955674815849248,"score_spread":0.18533077759848346,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2030808268","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982126,0.00020367802,0.00036855487,0.000013242682,0.00005354452,0.00019685872,0.0008645723,0.0000050372873,0.00008192839],"genre_scores_gemma":[0.99887294,0.000013088143,0.00029944058,0.0001856516,0.000027559941,0.000007745206,0.00057899667,0.00000970296,0.000004852844],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99922585,0.00008512133,0.00026583407,0.000193771,0.00004786146,0.00018157234],"domain_scores_gemma":[0.99957097,0.000042222084,0.00020237578,0.00014232493,7.5151814e-7,0.000041354877],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001323861,0.00012187498,0.0001674983,0.000012456293,0.00011153106,0.0000041790195,0.00010728451,0.00009999355,0.0002707725],"category_scores_gemma":[0.0000037636614,0.000099399665,0.000038905466,0.000041125943,0.0007591493,0.00009014655,0.00015751846,0.00007287497,0.000009525358],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003075588,0.00008140211,0.083618775,0.0000067008123,0.000019506771,6.36873e-8,0.00037441836,0.000014599779,0.9143333,0.000057923546,0.000015956122,0.001446633],"study_design_scores_gemma":[0.0003059258,0.000022864175,0.044035416,0.0000073050037,0.000041532985,0.0000062260074,0.00062907446,0.000013054146,0.95355326,0.000031484877,0.0012040365,0.00014980862],"about_ca_topic_score_codex":0.00006212959,"about_ca_topic_score_gemma":0.0000019931176,"teacher_disagreement_score":0.03958336,"about_ca_system_score_codex":0.000037229678,"about_ca_system_score_gemma":0.0000041447606,"threshold_uncertainty_score":0.40534008},"labels":[],"label_agreement":null},{"id":"W2031820528","doi":"10.1128/aem.71.9.5420-5426.2005","title":"Genetic Determinants of Volatile-Thiol Release by<i>Saccharomyces cerevisiae</i>during Wine Fermentation","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fermentation and Sensory Analysis","field":"Agricultural and Biological Sciences","cited_by":117,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Australian Government; Alberta Water Research Institute","keywords":"Wine; Yeast in winemaking; Saccharomyces cerevisiae; Yeast; Aroma; Fermentation; Biochemistry; Aroma of wine; Fermentation in winemaking; Chemistry; Strain (injury); Gene; Thiol; Sulfur; Biology; Food science; Organic chemistry","score_opus":0.004027577253254589,"score_gpt":0.16758875438640852,"score_spread":0.16356117713315393,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031820528","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99933165,0.00019202684,0.0000012414381,0.00013036763,0.000012521106,0.00013492403,0.00011793456,0.000012025387,0.00006732264],"genre_scores_gemma":[0.9988002,0.00029616803,0.00012789581,0.00022190124,0.000060560764,0.000009641813,0.00024142122,0.0000013749067,0.00024080244],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992485,0.000032154265,0.00025826806,0.00025610215,0.00003932016,0.00016566005],"domain_scores_gemma":[0.9997661,0.000023934743,0.00011376576,0.000038439546,0.0000019971837,0.000055777262],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000034089895,0.00012894528,0.00018656542,0.00001161079,0.000114849725,0.00000915808,0.00007884188,0.00007384303,0.001046449],"category_scores_gemma":[0.0000010642525,0.000064587206,0.00004481963,0.00004946594,0.00011492864,0.0000461239,0.00004524946,0.00004934064,0.000039328443],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028294931,0.00006469117,0.020788299,0.0000050155063,0.000015464902,5.570341e-7,0.00006360579,0.000008639864,0.9465517,0.0000021147628,0.000061035316,0.03241062],"study_design_scores_gemma":[0.00058482157,0.00013751237,0.40022883,0.0000076259375,0.000060244813,0.00003763508,0.00064443087,0.0001310081,0.5949211,0.000021931335,0.0029682892,0.00025653525],"about_ca_topic_score_codex":0.000028127944,"about_ca_topic_score_gemma":0.000020537045,"teacher_disagreement_score":0.37944055,"about_ca_system_score_codex":0.000020744537,"about_ca_system_score_gemma":0.0000010128136,"threshold_uncertainty_score":0.9998667},"labels":[],"label_agreement":null},{"id":"W2031862092","doi":"10.1128/aem.66.11.4972-4978.2000","title":"A Novel Selenite- and Tellurite-Inducible Gene in <i>Escherichia coli</i>","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Selenium in Biological Systems","field":"Nursing","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Escherichia coli; Selenium; Escherichia coli Proteins; Gene; Biology; Microbiology; Genetics; Computational biology; Chemistry","score_opus":0.007641152914215301,"score_gpt":0.18492016630428468,"score_spread":0.17727901339006938,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031862092","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976263,0.00069025997,0.000007592696,0.0001345503,0.00008629273,0.00033991988,0.000060111033,0.00003364672,0.0010212936],"genre_scores_gemma":[0.99740374,0.00018922322,0.0008569457,0.001207247,0.00007055756,0.00003609711,0.00011361636,0.000019797772,0.000102795195],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987727,0.00004460042,0.00025811317,0.0005163306,0.00002788561,0.0003804155],"domain_scores_gemma":[0.99966353,0.00006949745,0.00004301666,0.00014547248,7.508971e-7,0.00007773344],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012067722,0.00021385287,0.00029049497,0.000039003873,0.00008667531,0.000014814936,0.00009435803,0.00027362278,0.0002478843],"category_scores_gemma":[0.0000018254667,0.00018735042,0.0000231723,0.00007542541,0.00030174837,0.00003006828,0.00006216185,0.00020082488,0.0001046129],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013291479,0.00013438473,0.0068217167,0.000009068967,0.000009182941,0.0000013325177,0.00022040682,0.000007654068,0.9882501,0.000020186273,0.000052582614,0.004340491],"study_design_scores_gemma":[0.0048864456,0.00050982577,0.111277536,0.00002643817,0.000045203877,0.0005987658,0.0007319508,0.000100380195,0.7850058,0.00025181338,0.09553023,0.0010356053],"about_ca_topic_score_codex":0.000111241934,"about_ca_topic_score_gemma":0.000012544348,"teacher_disagreement_score":0.20324427,"about_ca_system_score_codex":0.000056897235,"about_ca_system_score_gemma":0.0000020378652,"threshold_uncertainty_score":0.76399285},"labels":[],"label_agreement":null},{"id":"W2032015927","doi":"10.1128/aem.03460-13","title":"Investigating the Responses of Cronobacter sakazakii to Garlic-Drived Organosulfur Compounds: a Systematic Study of Pathogenic-Bacterium Injury by Use of High-Throughput Whole-Transcriptome Sequencing and Confocal Micro-Raman Spectroscopy","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enterobacteriaceae and Cronobacter Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences","keywords":"Cronobacter sakazakii; Organosulfur compounds; Biology; Transcriptome; Bacteria; Microbiology; Computational biology; Chemistry; Genetics; Gene; Gene expression","score_opus":0.010137229151383226,"score_gpt":0.21896619550049348,"score_spread":0.20882896634911025,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2032015927","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99804497,0.00016465446,0.000048673828,0.00005770374,0.00003198505,0.0012348923,0.00040940222,0.0000045455536,0.0000031641987],"genre_scores_gemma":[0.99883735,0.000068253314,0.00048173364,0.00020741214,0.000017804088,0.000080506004,0.00024404813,0.000027255006,0.00003564591],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983508,0.00024987693,0.0005934803,0.0004358269,0.00006855178,0.00030146167],"domain_scores_gemma":[0.9991748,0.00006254625,0.00025050866,0.00040215947,0.000019047784,0.00009094769],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016513457,0.00025829568,0.00053128984,0.00005404328,0.00008030739,0.00003486403,0.00021668883,0.00014625934,0.000017167391],"category_scores_gemma":[0.000013656793,0.00019727608,0.000048295242,0.000053973017,0.0006265512,0.000014655258,0.00034176823,0.00012585719,0.0000038101236],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001638743,0.00016653739,0.020773022,0.00038721733,0.00018399664,3.8597264e-7,0.0011830128,0.0000011698074,0.9770044,0.0000035984388,0.000108344524,0.000024462499],"study_design_scores_gemma":[0.00088000146,0.0013255851,0.033582352,0.00011455818,0.00007002672,0.000028158585,0.0032990067,0.0000010824285,0.96039873,0.0000065015197,0.000105140025,0.00018883984],"about_ca_topic_score_codex":0.00030186027,"about_ca_topic_score_gemma":0.00003139331,"teacher_disagreement_score":0.016605632,"about_ca_system_score_codex":0.00002993927,"about_ca_system_score_gemma":0.000023309503,"threshold_uncertainty_score":0.8044685},"labels":[],"label_agreement":null},{"id":"W2032549914","doi":"10.1128/aem.02120-12","title":"Genomic and Transcriptomic Studies of an RDX (Hexahydro-1,3,5-Trinitro-1,3,5-Triazine)-Degrading Actinobacterium","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Steroid Chemistry and Biochemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"McGill University","keywords":"Transcriptome; Strain (injury); Biology; Genome; Actinobacteria; Whole genome sequencing; Microbiology; Genetics; Computational biology; Bacteria; Gene; 16S ribosomal RNA; Gene expression","score_opus":0.010193945823577823,"score_gpt":0.21657946623275606,"score_spread":0.20638552040917824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2032549914","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954516,0.0040708,0.000007879855,0.000018099887,0.000083514096,0.00011231114,0.0001330725,0.000008363832,0.0001143519],"genre_scores_gemma":[0.99752265,0.001289772,0.00029118735,0.0001225845,0.0002278326,0.000015271318,0.00044176396,0.000021292048,0.00006766865],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99901396,0.000026771817,0.00023548558,0.00036767474,0.00002731199,0.000328768],"domain_scores_gemma":[0.99954456,0.000016025026,0.00010046189,0.00021431468,0.000003138308,0.000121498546],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000116843294,0.00024083727,0.00027295816,0.000021105754,0.000078501595,0.000006239878,0.00010879009,0.00022744203,0.000015790944],"category_scores_gemma":[0.0000047214303,0.00022490502,0.000047376987,0.000019603882,0.00039846037,0.000007259456,0.00014878922,0.00009991529,0.0000027240176],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013096264,0.000095276315,0.008506051,0.00005318151,0.00011989871,5.075958e-7,0.00015697858,5.1597624e-7,0.9902783,0.000005221867,0.000031763742,0.0006213518],"study_design_scores_gemma":[0.0008014423,0.00011687645,0.008120478,0.00000574775,0.000052953248,0.00016279706,0.00082262553,9.4817887e-7,0.98682845,0.000010447362,0.002833031,0.0002442329],"about_ca_topic_score_codex":0.0000015925003,"about_ca_topic_score_gemma":4.776513e-7,"teacher_disagreement_score":0.0034498693,"about_ca_system_score_codex":0.000017676151,"about_ca_system_score_gemma":0.000006373677,"threshold_uncertainty_score":0.917136},"labels":[],"label_agreement":null},{"id":"W2033425704","doi":"10.1128/aem.05762-11","title":"Association of Different Genetic Types of Francisella-Like Organisms with the Rocky Mountain Wood Tick (Dermacentor andersoni) and the American Dog Tick (Dermacentor variabilis) in Localities Near Their Northern Distributional Limits","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Ministry of Environment - Saskatchewan; University of Saskatchewan","keywords":"Dermacentor variabilis; Tick; Biology; Rocky Mountain spotted fever; Dermacentor; Ecology; Zoology; Ixodidae; Virology","score_opus":0.003754577211144187,"score_gpt":0.16640705681291929,"score_spread":0.1626524796017751,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2033425704","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987188,0.0004342865,0.00015059079,0.00012200061,0.000021709644,0.0002980754,0.00020822327,0.000001852983,0.000044461838],"genre_scores_gemma":[0.9990306,0.0005608549,0.000035106008,0.000105858766,0.000025692978,0.000019639203,0.00017116603,0.000012320156,0.000038767415],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99918956,0.00011145718,0.00018333444,0.00022898207,0.000061045874,0.00022560457],"domain_scores_gemma":[0.9995868,0.0000627169,0.00015052092,0.00014973864,0.000011963042,0.000038254475],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014653154,0.00015357787,0.00024798416,0.000013011769,0.000079409154,0.000008910827,0.00011986311,0.00009242005,0.000032962012],"category_scores_gemma":[0.0000061053406,0.00008505995,0.000032171065,0.00004053492,0.0010331585,0.0000024790256,0.00010321032,0.00009724643,0.0000014108359],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006670905,0.00012933902,0.08743082,0.000019107592,0.00014368008,3.8970163e-7,0.0008520131,0.00001083103,0.9098051,0.00006858327,0.000024943995,0.000848114],"study_design_scores_gemma":[0.00680225,0.0009815702,0.53821504,0.000017869832,0.0001596799,0.00004074057,0.003574328,0.00017907178,0.4452878,0.00025620247,0.00398219,0.000503257],"about_ca_topic_score_codex":0.00011378243,"about_ca_topic_score_gemma":0.00022466679,"teacher_disagreement_score":0.4645173,"about_ca_system_score_codex":0.000034131877,"about_ca_system_score_gemma":0.000020469137,"threshold_uncertainty_score":0.38067156},"labels":[],"label_agreement":null},{"id":"W2033467405","doi":"10.1128/aem.67.3.1239-1245.2001","title":"Rapid Screening Method for Mycobactericidal Activity of Chemical Germicides That Uses <i>Mycobacterium terrae</i> Expressing a Green Fluorescent Protein Gene","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"School of Medicine, Stanford University","keywords":"Green fluorescent protein; Glutaraldehyde; Microbiology; Fluorescence; Biology; Fluorescence microscope; Agar plate; Bacteria; Molecular biology; Chemistry; Chromatography; Biochemistry; Gene","score_opus":0.024466336308560738,"score_gpt":0.2573862657351945,"score_spread":0.23291992942663378,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2033467405","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99491495,0.00028118954,0.0030107612,0.00024765517,0.00003373183,0.0011285795,0.00028087333,0.000033102307,0.00006912947],"genre_scores_gemma":[0.97365314,0.00025577066,0.024818512,0.0003615174,0.00015785637,0.00022709309,0.00044909873,0.000040873685,0.00003615593],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99841434,0.00007012058,0.00029578528,0.0005527727,0.00009543373,0.000571555],"domain_scores_gemma":[0.9991877,0.0001564268,0.00016011497,0.00027685295,0.00000704417,0.00021188204],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00021088014,0.0003055328,0.0006032779,0.00008991257,0.000088022956,0.000017981782,0.00011964644,0.00022877834,0.00015964518],"category_scores_gemma":[0.000013629836,0.00026278055,0.00014292538,0.000057035595,0.00032178411,0.00007982112,0.00023378934,0.00020303103,0.0000041683425],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017834911,0.00028502994,0.013198326,0.00014296354,0.000108313405,0.000011467058,0.0000925823,2.1382968e-7,0.9452671,0.0000051477214,0.00008597009,0.039019383],"study_design_scores_gemma":[0.002155066,0.0003468471,0.016081573,0.00006679256,0.0000861036,0.00033936906,0.00007666161,0.00003545066,0.9760996,0.00002079672,0.0044500814,0.00024164781],"about_ca_topic_score_codex":0.00009889808,"about_ca_topic_score_gemma":0.0000016050751,"teacher_disagreement_score":0.038777735,"about_ca_system_score_codex":0.0000652489,"about_ca_system_score_gemma":0.000022050097,"threshold_uncertainty_score":0.9999824},"labels":[],"label_agreement":null},{"id":"W2033770631","doi":"10.1128/aem.00499-07","title":"Changes in the Catalytic Properties of <i>Pyrococcus furiosus</i> Thermostable Amylase by Mutagenesis of the Substrate Binding Sites","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Pyrococcus furiosus; Substrate (aquarium); Mutagenesis; Chemistry; Amylase; Enzyme; Glycoside hydrolase; Biochemistry; Directed evolution; Rubredoxin; Thermostability; Active site; Stereochemistry; Mutation; Biology; Gene; Mutant; Archaea","score_opus":0.005957736190741969,"score_gpt":0.16949270061160648,"score_spread":0.16353496442086451,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2033770631","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998954,0.0006311744,0.000006600606,0.00010278417,0.000023713852,0.00016603858,0.00005319015,0.0000013868289,0.00006110421],"genre_scores_gemma":[0.9991942,0.0002903293,0.00000597172,0.0001909697,0.000019853385,0.000008298124,0.00020211657,0.0000064913006,0.00008173561],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99956423,0.000023713563,0.0001273848,0.00014641375,0.0000226013,0.00011566249],"domain_scores_gemma":[0.9997705,0.000005352289,0.00008106853,0.00013101986,0.0000020481384,0.000010016986],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014257118,0.00007958086,0.00008279603,0.000015509397,0.00004199276,0.000002789975,0.000097187294,0.000069392976,0.000006134634],"category_scores_gemma":[0.0000022595352,0.000048104317,0.000018103603,0.00004172981,0.00021615445,0.0000017905388,0.000054757944,0.00003914669,9.4202045e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035905035,0.00005100679,0.0066016396,0.000015784584,0.000010282476,1.128269e-7,0.00022242367,0.0000019909137,0.9926586,0.0000058609753,0.000045616758,0.00035077936],"study_design_scores_gemma":[0.0001887146,0.000038194532,0.0062040156,0.0000042018933,0.000008547338,0.000010797745,0.0009013484,3.666232e-7,0.9910484,0.0000020250363,0.0015367485,0.000056667093],"about_ca_topic_score_codex":0.000007629987,"about_ca_topic_score_gemma":0.00004308934,"teacher_disagreement_score":0.0016102244,"about_ca_system_score_codex":0.0000055280916,"about_ca_system_score_gemma":0.000004084561,"threshold_uncertainty_score":0.1961637},"labels":[],"label_agreement":null},{"id":"W2033781004","doi":"10.1128/aem.01170-06","title":"Diversity of Fungi, Bacteria, and Actinomycetes on Leaves Decomposing in a Stream","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Freshwater macroinvertebrate diversity and ecology","field":"Environmental Science","cited_by":225,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Mount Allison University; Kent State University","keywords":"Biology; Temperature gradient gel electrophoresis; Bacteria; Species richness; Generalist and specialist species; Biomass (ecology); Microorganism; Botany; Microbial population biology; Fungus; Community structure; Ecology; 16S ribosomal RNA; Habitat","score_opus":0.003846404476691828,"score_gpt":0.14520701399117553,"score_spread":0.1413606095144837,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2033781004","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99823654,0.000053171647,0.000002420224,0.000031385807,0.00002717532,0.000098800665,0.000038755472,0.0000062697427,0.001505457],"genre_scores_gemma":[0.99947035,0.0000607946,0.00020484874,0.00015275447,0.0000068221143,0.0000016219759,0.00004459395,0.0000042506103,0.000053958167],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993659,0.000022784445,0.00011648098,0.00026824654,0.00002347354,0.0002030679],"domain_scores_gemma":[0.99981415,0.000035138717,0.00004814843,0.000071824536,2.0388669e-7,0.000030552677],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000052715386,0.00011536441,0.00016436727,0.000035152858,0.00017769967,0.00000406244,0.000078386,0.00008992932,0.0004803285],"category_scores_gemma":[4.1712372e-7,0.00011349552,0.00001674903,0.000027429614,0.0005044378,0.00004980704,0.0007882784,0.000072780385,0.000045347508],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004348616,0.00008063223,0.43108696,0.0000035867504,0.000004254011,0.0000031610903,0.0001810127,0.000032068663,0.56716424,0.000051447594,0.00007871266,0.0012704419],"study_design_scores_gemma":[0.0008919294,0.00017533904,0.8876209,0.000004523981,0.000012337328,0.000024947843,0.00035761765,0.000033005905,0.10926855,0.00047039223,0.0009546615,0.00018579784],"about_ca_topic_score_codex":0.0007031942,"about_ca_topic_score_gemma":0.00042568237,"teacher_disagreement_score":0.4578957,"about_ca_system_score_codex":0.000056211968,"about_ca_system_score_gemma":8.807229e-7,"threshold_uncertainty_score":0.52592605},"labels":[],"label_agreement":null},{"id":"W2034038197","doi":"10.1128/aem.00757-11","title":"Increased Thermal and Osmotic Stress Resistance in Listeria monocytogenes 568 Grown in the Presence of Trehalose Due to Inactivation of the Phosphotrehalase-Encoding Gene <i>treA</i>","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; Agriculture and Agri-Food Canada","funders":"","keywords":"Listeria monocytogenes; Trehalose; Osmoprotectant; Biology; PEP group translocation; Microbiology; Bacteria; Osmotic shock; Biochemistry; Mutant; Gene; Proline; Genetics; Amino acid","score_opus":0.020859810596335106,"score_gpt":0.21431883885771327,"score_spread":0.19345902826137817,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2034038197","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99874747,0.00044815577,0.000012893944,0.00003177878,0.00003288625,0.0003547128,0.00011797563,0.0000013516856,0.0002527914],"genre_scores_gemma":[0.9992873,0.0001300406,0.00032348352,0.00013171125,0.000013664078,0.000041087824,0.000054367865,0.000010622677,0.000007734201],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991324,0.00011777814,0.00026124748,0.00029286876,0.000034479584,0.00016125299],"domain_scores_gemma":[0.9995196,0.00003453357,0.000118341355,0.00030101408,0.000003268902,0.000023264698],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015521646,0.00014313153,0.00018572464,0.000030342018,0.000037081794,0.000003578352,0.00023345,0.0001140434,0.000005654035],"category_scores_gemma":[0.000010647638,0.000100862955,0.000026664602,0.00006609545,0.000307682,0.000005431497,0.00030748424,0.00005968172,2.8396082e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039002617,0.00010127149,0.05677374,0.000023091718,0.000012473492,0.0000018294926,0.0008941724,0.000008843576,0.94136727,0.000053432086,0.0000037018349,0.00037015867],"study_design_scores_gemma":[0.0004393526,0.00007854051,0.26753664,0.000015636477,0.000008504812,0.000012161421,0.00038355342,9.991073e-7,0.7313398,0.000043447995,0.00006150768,0.00007982897],"about_ca_topic_score_codex":0.00016337873,"about_ca_topic_score_gemma":0.0003305055,"teacher_disagreement_score":0.21076289,"about_ca_system_score_codex":0.000018623135,"about_ca_system_score_gemma":0.000011096567,"threshold_uncertainty_score":0.4113072},"labels":[],"label_agreement":null},{"id":"W2034395940","doi":"10.1128/aem.03212-13","title":"Improved Short-Sequence-Repeat Genotyping of Mycobacterium avium subsp. paratuberculosis by Using Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary","funders":"Alberta Livestock and Meat Agency; Dairy Farmers of Canada","keywords":"Paratuberculosis; Genotyping; Sanger sequencing; Biology; Genotype; Mycobacterium; Microsatellite; Mass spectrometry; Genetics; Matrix-assisted laser desorption/ionization; Locus (genetics); DNA sequencing; Molecular biology; Chemistry; DNA; Chromatography; Bacteria; Gene","score_opus":0.00994034068370453,"score_gpt":0.22801318324561617,"score_spread":0.21807284256191165,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2034395940","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99817824,0.00045216203,0.00031131261,0.00006702902,0.000037309317,0.00058853906,0.00026041543,0.000016842558,0.000088162924],"genre_scores_gemma":[0.99544245,0.000561989,0.0023375438,0.000089340014,0.00004351866,0.000037571896,0.0013654429,0.000026897233,0.000095237985],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987186,0.000050072864,0.00042510667,0.0003666808,0.000077629215,0.00036189787],"domain_scores_gemma":[0.9994082,0.000057690046,0.00013508394,0.00023524446,0.000018224458,0.00014555987],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009976999,0.00021679733,0.00045620257,0.00013086703,0.0000640909,0.000013345744,0.00008167144,0.00022057196,0.0011338037],"category_scores_gemma":[0.000008855714,0.00019120604,0.00007880433,0.0001484139,0.0003006025,0.00008223521,0.00008549094,0.00013490788,0.000045459077],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010341474,0.00016780032,0.02675705,0.0001007541,0.00011108056,0.0000015979424,0.000041676234,0.0000021038982,0.97199374,0.0000046526748,0.00018547823,0.0005306545],"study_design_scores_gemma":[0.00081032974,0.00024559593,0.034560584,0.00003189603,0.00013518735,0.00007385107,0.00011336114,0.00023215354,0.9634843,0.000014992177,0.00010938879,0.00018837032],"about_ca_topic_score_codex":0.00010102094,"about_ca_topic_score_gemma":0.0000010596219,"teacher_disagreement_score":0.008509447,"about_ca_system_score_codex":0.00013026154,"about_ca_system_score_gemma":0.000021561675,"threshold_uncertainty_score":0.9997793},"labels":[],"label_agreement":null},{"id":"W2035031006","doi":"10.1128/aem.00704-08","title":"Diversity and Distribution of Commensal Fecal<i>Escherichia coli</i>Bacteria in Beef Cattle Administered Selected Subtherapeutic Antimicrobials in a Feedlot Setting","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; Agriculture and Agri-Food Canada","funders":"Bundesinstitut für Risikobewertung; Agriculture and Agri-Food Canada; University of Alberta; University of Guelph","keywords":"Feedlot; Escherichia coli; Feces; Beef cattle; Biology; Bacteria; Microbiology; Distribution (mathematics); Antimicrobial; Biotechnology; Veterinary medicine; Animal science; Medicine; Genetics; Mathematics","score_opus":0.007904623904495566,"score_gpt":0.19252886632352653,"score_spread":0.18462424241903097,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2035031006","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99932575,0.00016088999,0.000027581278,0.000034209585,0.00002902319,0.00022572116,0.00017810977,0.000004089963,0.000014651763],"genre_scores_gemma":[0.9983024,0.00043624296,0.00015223848,0.00014350237,0.000013529459,0.0000037840757,0.0009214364,0.000011735339,0.000015124635],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99911076,0.00007202043,0.00025348028,0.00029946078,0.000021560154,0.00024273577],"domain_scores_gemma":[0.999715,0.000019069596,0.000102208935,0.00012284963,0.0000037448335,0.000037126643],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009738076,0.00016218067,0.00026003222,0.000028333738,0.00016932299,0.0000032317869,0.000085653446,0.00019260476,0.000008167915],"category_scores_gemma":[0.0000051537872,0.0001725663,0.0000208335,0.000060515275,0.0004326432,0.000004296192,0.0004582548,0.00009090218,0.0000010742267],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001578177,0.00008138505,0.34839696,0.0000135171285,0.00001423278,0.0000014329092,0.00023267057,0.0000010351365,0.6510252,0.000003546161,0.000023982246,0.000048234917],"study_design_scores_gemma":[0.0010097834,0.000108317676,0.755857,0.00000976842,0.000008273925,0.00004357166,0.00012528832,0.0000015662501,0.24246272,0.000003906116,0.00022822543,0.00014157193],"about_ca_topic_score_codex":0.000057062913,"about_ca_topic_score_gemma":0.000047384256,"teacher_disagreement_score":0.40856245,"about_ca_system_score_codex":0.000034203924,"about_ca_system_score_gemma":0.00001532864,"threshold_uncertainty_score":0.70370495},"labels":[],"label_agreement":null},{"id":"W2035905992","doi":"10.1128/aem.01640-12","title":"Changes in the Gut Microbiome of the Sea Lamprey during Metamorphosis","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Parasite Biology and Host Interactions","field":"Environmental Science","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Regina","funders":"","keywords":"Biology; Metamorphosis; Larva; Petromyzon; Microbiome; Zoology; Lamprey; Ecology; Genetics; Fishery","score_opus":0.006809815323203367,"score_gpt":0.2198892889031303,"score_spread":0.21307947357992693,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2035905992","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99776655,0.00015220528,0.000001453781,0.00028490846,0.00009527028,0.00018778908,0.00005918797,0.0000041896515,0.0014484142],"genre_scores_gemma":[0.99908775,0.00007592916,0.000045337776,0.00051551487,0.000024226527,0.000031826436,0.000028057586,0.0000055281116,0.00018583727],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99933326,0.000085900196,0.00012519686,0.00016363352,0.000026942438,0.00026505903],"domain_scores_gemma":[0.9996645,0.000057422756,0.00006693071,0.00018591051,2.2617934e-7,0.000025050253],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016238361,0.0001155085,0.00012706236,0.000020652675,0.00013518323,0.0000030763076,0.00021358825,0.000094708645,0.0006237155],"category_scores_gemma":[0.0000020914638,0.00006726315,0.000036598605,0.00007086046,0.0005590869,0.000040378218,0.00023332334,0.0001405586,0.00013501669],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00000788657,0.000062616135,0.37552494,0.00000151075,0.000007754483,1.3820602e-7,0.00039649822,0.0000023559107,0.6237443,0.000022150887,0.00006800868,0.00016182031],"study_design_scores_gemma":[0.00017664822,0.000013651983,0.8406539,0.0000021269352,0.000016242771,0.00008450692,0.0003176154,4.003831e-7,0.1473686,0.000016578695,0.011270109,0.00007965619],"about_ca_topic_score_codex":0.000076836266,"about_ca_topic_score_gemma":0.0001277366,"teacher_disagreement_score":0.47637576,"about_ca_system_score_codex":0.000047064554,"about_ca_system_score_gemma":9.308453e-7,"threshold_uncertainty_score":0.68292475},"labels":[],"label_agreement":null},{"id":"W2036149277","doi":"10.1128/aem.01798-12","title":"Evidence against Barium in the Mushroom Trogia venenata as a Cause of Sudden Unexpected Deaths in Yunnan, China","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fungal Biology and Applications","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Yunnan Provincial Science and Technology Department; Department of Science and Technology, Ministry of Science and Technology, India; National Science Foundation","keywords":"Barium; Mushroom; Culprit; China; Medicine; Biology; Chemistry; Food science; Geography; Internal medicine; Inorganic chemistry","score_opus":0.01537723826844129,"score_gpt":0.2402796427496414,"score_spread":0.2249024044812001,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2036149277","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99638444,0.0020565197,0.0000036897056,0.0005739368,0.000023979168,0.00039764625,0.00002860663,0.000006528672,0.00052464154],"genre_scores_gemma":[0.9980221,0.0008087986,0.000079683516,0.00074337184,0.00003461526,0.000075882635,0.00020452206,0.000007422725,0.000023611567],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99923676,0.000059339403,0.00021554828,0.00020615934,0.000026582558,0.00025561516],"domain_scores_gemma":[0.99956506,0.00012036513,0.00005488865,0.0002163701,0.0000010782711,0.00004221462],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019264703,0.00012319928,0.00022017314,0.000054271597,0.00003777033,0.0000017026222,0.00010624414,0.00016054387,0.000055154895],"category_scores_gemma":[0.00001433326,0.000086238964,0.000026960484,0.00009433456,0.0002983217,0.00002936128,0.000074401745,0.00022207739,0.0000393759],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009098703,0.00023966789,0.13110213,0.000011852723,0.000015625596,0.000004861775,0.0008283,0.0000013599512,0.8665222,0.0006589512,0.00006780905,0.00045628677],"study_design_scores_gemma":[0.001102231,0.00014319936,0.94937664,0.000046616875,0.000040918894,0.00017503365,0.0012517539,0.0000045151064,0.046009365,0.00008894341,0.0016226143,0.0001381441],"about_ca_topic_score_codex":0.00005562876,"about_ca_topic_score_gemma":0.000021229027,"teacher_disagreement_score":0.8205128,"about_ca_system_score_codex":0.000039979597,"about_ca_system_score_gemma":0.000011619391,"threshold_uncertainty_score":0.3516723},"labels":[],"label_agreement":null},{"id":"W2036199362","doi":"10.1128/aem.00446-14","title":"Modeling the Infection Dynamics of Bacteriophages in Enteric Escherichia coli: Estimating the Contribution of Transduction to Antimicrobial Gene Spread","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Food and Agriculture; University of Guelph","keywords":"Transduction (biophysics); Biology; Escherichia coli; Microbiology; Horizontal gene transfer; Gene; Lysogen; Bacteria; Genetics; Bacteriophage; Genome; Biochemistry","score_opus":0.004161722108774182,"score_gpt":0.19205140828508707,"score_spread":0.18788968617631288,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2036199362","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.983121,0.000009059797,0.016085982,0.00019945318,0.00016042354,0.00032643627,0.000036803234,0.000006553369,0.000054321084],"genre_scores_gemma":[0.9986447,0.000038823488,0.00100495,0.00015542032,0.000027130978,0.000018992616,0.00009170872,0.000009852484,0.000008404506],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991942,0.00007023184,0.00030857683,0.0002181681,0.00002916339,0.00017967801],"domain_scores_gemma":[0.9996881,0.000033764656,0.00010774818,0.00014413537,0.000002053224,0.000024184781],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001991141,0.0001307457,0.00018739943,0.000028339602,0.00011493561,0.000009716205,0.000108022694,0.000078123696,0.000099130084],"category_scores_gemma":[0.000005714153,0.00009309679,0.000043217577,0.0000946057,0.00025896166,0.000059184124,0.00012097262,0.00012936597,0.00001268106],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004147742,0.000064510125,0.0015180251,0.0000051792977,0.00000912249,7.8712134e-8,0.00030706904,0.014285749,0.9796537,0.000033629178,0.0000062561335,0.004075197],"study_design_scores_gemma":[0.001394656,0.00034151127,0.25577956,0.00005675451,0.00010145138,0.000106015046,0.00035097415,0.073215924,0.66704094,0.00015520479,0.0010206245,0.0004363692],"about_ca_topic_score_codex":0.00083431974,"about_ca_topic_score_gemma":0.0005270968,"teacher_disagreement_score":0.31261277,"about_ca_system_score_codex":0.00009870544,"about_ca_system_score_gemma":0.0000021224466,"threshold_uncertainty_score":0.3796377},"labels":[],"label_agreement":null},{"id":"W2036297543","doi":"10.1128/aem.01905-13","title":"Probing the Functional Diversity of Global Pristine Soil Communities with 3-Chlorobenzoate Reveals that Communities of Generalists Dominate Catabolic Transformation","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto","funders":"National Institute of Environmental Health Sciences","keywords":"Biology; Generalist and specialist species; Ecology; Soil microbiology; Ecosystem; UniFrac; Population; Environmental chemistry; Soil water; Chemistry; Bacteria; Habitat; 16S ribosomal RNA","score_opus":0.011125083644839101,"score_gpt":0.16787414079251825,"score_spread":0.15674905714767914,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2036297543","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99831706,0.000050244846,0.00007741639,0.000107031396,0.000028180852,0.00035108445,0.00016122597,0.000009050177,0.00089870224],"genre_scores_gemma":[0.9988691,0.000118477124,0.00010728334,0.00030361136,0.000006249834,0.000025774685,0.00053941365,0.000006124289,0.000023924349],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99921805,0.00020678081,0.00021966608,0.00009866124,0.000045473822,0.00021138474],"domain_scores_gemma":[0.99941826,0.00010225546,0.00018241306,0.00026330477,0.0000036696317,0.000030099436],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00017541538,0.00016650023,0.00026504233,0.000015184408,0.0005570719,0.0000055852993,0.00031064008,0.00010879338,0.001163689],"category_scores_gemma":[5.6449267e-7,0.00011863696,0.000035633326,0.000051581424,0.0021621126,0.0001071034,0.0007119068,0.00019547027,0.0000260177],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018590852,0.00017757177,0.22002393,0.00004423612,0.000082687344,1.8939386e-7,0.008463703,0.0009501473,0.7680507,0.00093160104,0.00040095163,0.0006883724],"study_design_scores_gemma":[0.0013261978,0.00025396078,0.96387166,0.00001989377,0.00007416724,0.00009179822,0.011933625,0.00006200481,0.020031417,0.0014478136,0.00059181044,0.0002956415],"about_ca_topic_score_codex":0.006075816,"about_ca_topic_score_gemma":0.0034783387,"teacher_disagreement_score":0.7480193,"about_ca_system_score_codex":0.000058377213,"about_ca_system_score_gemma":0.0000045916277,"threshold_uncertainty_score":0.99974936},"labels":[],"label_agreement":null},{"id":"W2037798583","doi":"10.1128/aem.66.12.5393-5398.2000","title":"Anaerobic Oxidation of <i>n</i> -Dodecane by an Addition Reaction in a Sulfate-Reducing Bacterial Enrichment Culture","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":164,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Office of Naval Research; Natural Sciences and Engineering Research Council of Canada","keywords":"Chemistry; Moiety; Metabolite; Trimethylsilyl; Chromatography; Enrichment culture; Alkane; Gas chromatography; Mass spectrometry; Stereochemistry; Organic chemistry; Hydrocarbon; Bacteria; Biochemistry","score_opus":0.0029980008466706115,"score_gpt":0.1703176843343062,"score_spread":0.16731968348763557,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2037798583","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987393,0.000022706126,0.000004269166,0.00003138622,0.000050300852,0.00022967224,0.00020633578,0.000012187193,0.00070383854],"genre_scores_gemma":[0.9960678,0.00039316245,0.000215238,0.00014650503,0.000023477118,0.000008774501,0.0029718508,0.000008537091,0.00016461311],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990703,0.000046139172,0.00026837992,0.0003621174,0.000050593255,0.00020246471],"domain_scores_gemma":[0.99972063,0.00000762517,0.000093939394,0.00011666515,6.214776e-7,0.000060486065],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00010537011,0.00015093153,0.00016241596,0.000025183914,0.000052477142,0.000007917611,0.000078699864,0.00015208797,0.0056536724],"category_scores_gemma":[9.1377404e-7,0.00013956182,0.000020307785,0.00007432182,0.00018626907,0.0001299067,0.00003716429,0.00008681511,0.00011895637],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008880726,0.00018980172,0.0011204672,0.0000023742468,0.0000041218136,4.44184e-7,0.0002829307,0.00002018879,0.98413485,0.0000022758775,0.0013576131,0.012796121],"study_design_scores_gemma":[0.001136569,0.00019688133,0.023558613,0.0000067733554,0.000011826832,0.000018504139,0.00020446294,0.00001596959,0.9477768,0.000021369051,0.026807174,0.00024507736],"about_ca_topic_score_codex":0.00022647188,"about_ca_topic_score_gemma":0.00007557385,"teacher_disagreement_score":0.036358077,"about_ca_system_score_codex":0.00013253081,"about_ca_system_score_gemma":0.0000027125282,"threshold_uncertainty_score":0.9952553},"labels":[],"label_agreement":null},{"id":"W2038267920","doi":"10.1128/aem.70.10.6123-6130.2004","title":"Helix 4 Mutants of the <i>Bacillus thuringiensis</i> Insecticidal Toxin Cry1Aa Display Altered Pore-Forming Abilities","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect Resistance and Genetics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Mutant; Bacillus thuringiensis; Biophysics; Biochemistry; Helix (gastropod); Amino acid; Brush border; Mutagenesis; Chemistry; Vesicle; Biology; Membrane; Bacteria","score_opus":0.002946508092121315,"score_gpt":0.16711656586859486,"score_spread":0.16417005777647353,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2038267920","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998426,0.0006436111,0.000060917937,0.000045848763,0.00012483232,0.00018412428,0.00012318243,0.00000432476,0.00038711398],"genre_scores_gemma":[0.998813,0.00027096726,0.00018818972,0.000404069,0.00008281733,0.000012226577,0.0001171505,0.000015831374,0.000095794116],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999168,0.000019734262,0.00021291646,0.00029519704,0.00004132855,0.00026285346],"domain_scores_gemma":[0.99959093,0.000008293624,0.0000857024,0.0002747706,0.0000035579485,0.00003674958],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000623798,0.00017199395,0.00016483996,0.000017144668,0.000118615455,0.0000059150248,0.00015132518,0.00015826612,0.000010989264],"category_scores_gemma":[0.0000045765155,0.00012955772,0.00006893082,0.000027509906,0.00048623764,0.0000023600658,0.00021599478,0.00008673743,0.0000036893036],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006433206,0.000055806395,0.0017383537,0.000018870975,0.000032865642,8.82968e-7,0.00019878603,0.00009239481,0.99709266,0.00013776707,0.000023730903,0.0005435207],"study_design_scores_gemma":[0.00073242094,0.00016555194,0.008701827,0.000009096569,0.00001856765,0.000097410586,0.00041922278,5.6778765e-7,0.9845176,0.00027680382,0.0048908265,0.00017012273],"about_ca_topic_score_codex":0.000019238585,"about_ca_topic_score_gemma":0.000059940397,"teacher_disagreement_score":0.012575108,"about_ca_system_score_codex":0.000026317293,"about_ca_system_score_gemma":0.00002288079,"threshold_uncertainty_score":0.528321},"labels":[],"label_agreement":null},{"id":"W2038339334","doi":"10.1128/aem.02670-14","title":"Alternative Fecal Indicators and Their Empirical Relationships with Enteric Viruses, Salmonella enterica, and Pseudomonas aeruginosa in Surface Waters of a Tropical Urban Catchment","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fecal contamination and water quality","field":"Environmental Science","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Salmonella enterica; Pseudomonas aeruginosa; Feces; Salmonella; Microbiology; Enteric fever; Fecal coliform; Biology; Enteric bacteria; Enterobacteriaceae; Enteric virus; Ecology; Bacteria; Escherichia coli; Typhoid fever; Water quality","score_opus":0.012113618664476708,"score_gpt":0.2076788834180314,"score_spread":0.19556526475355468,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2038339334","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989424,0.000042768257,0.00041564854,0.00013981461,0.000015274274,0.00021547632,0.000027928034,0.000008083265,0.00019260975],"genre_scores_gemma":[0.99926776,0.000045559034,0.00030415834,0.000303081,0.000006859363,0.000011582922,0.000034299923,0.000009644505,0.00001704001],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99887645,0.0001916055,0.00024696728,0.00041394625,0.00005477256,0.00021624142],"domain_scores_gemma":[0.9995877,0.00010675175,0.00008813031,0.00011208968,5.5207266e-7,0.00010475498],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017261454,0.00019032779,0.0002593893,0.000041378687,0.00007331583,0.000009581177,0.00007843506,0.00009659261,0.00003665118],"category_scores_gemma":[0.000002972452,0.0001359148,0.00001750419,0.00005970472,0.0009047607,0.00004761201,0.00021869503,0.00016987897,0.000010321412],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008383819,0.00010990876,0.83668154,0.0000067139413,0.000013144793,0.0000012322587,0.0017982561,0.000018906734,0.16000642,0.00011409553,0.000018972029,0.0011469647],"study_design_scores_gemma":[0.0012067875,0.0002620693,0.97618186,0.000008691858,0.000010854436,0.00003281866,0.0005969609,0.000127428,0.01967825,0.0001350892,0.001556622,0.00020254923],"about_ca_topic_score_codex":0.00012683176,"about_ca_topic_score_gemma":0.000037421727,"teacher_disagreement_score":0.14032817,"about_ca_system_score_codex":0.00007788803,"about_ca_system_score_gemma":0.0000019349177,"threshold_uncertainty_score":0.55424446},"labels":[],"label_agreement":null},{"id":"W2038355453","doi":"10.1128/aem.05427-11","title":"<scp>L</scp> -Arabitol Is the Actual Inducer of Xylanase Expression in Hypocrea jecorina (Trichoderma reesei)","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Iogen Corporation","funders":"Austrian Science Fund","keywords":"Hypocrea; Trichoderma reesei; Arabitol; Xylose; Biochemistry; Xylanase; Inducer; Pentose; Xylitol; Biology; Repressor; Arabinose; Chemistry; Gene expression; Enzyme; Gene; Fermentation; Cellulase","score_opus":0.010477027941679016,"score_gpt":0.16384595809675212,"score_spread":0.1533689301550731,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2038355453","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967314,0.00042257164,0.000024584131,0.000021987697,0.00011460495,0.00016734903,0.000029185127,0.000021501268,0.0024668332],"genre_scores_gemma":[0.99907225,0.00042353908,0.00015825397,0.00012726602,0.00003208793,0.000012319565,0.0000333219,0.00001232812,0.00012863611],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99941486,0.000018719142,0.00016356146,0.00019698075,0.00002545982,0.00018039666],"domain_scores_gemma":[0.9997392,0.000030551015,0.000034882803,0.00015988079,9.681195e-7,0.000034513145],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006667258,0.0001314842,0.00013458224,0.00005523059,0.000038914943,0.0000026849436,0.00010176172,0.00015582678,0.00012308445],"category_scores_gemma":[0.0000021698738,0.00009481626,0.00002598923,0.00004898531,0.0001611852,0.000034426095,0.00008265036,0.00016401579,0.000046871173],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010371804,0.00005135903,0.0029451435,0.000024036546,0.0000100260695,0.0000011784982,0.0014119706,0.0000039062525,0.99157584,0.000008934456,0.002349755,0.0016074894],"study_design_scores_gemma":[0.00051815,0.000044378474,0.011498473,0.000005568529,0.000009192022,0.00002878112,0.002062331,0.00003214658,0.95697504,0.000068892725,0.028683726,0.00007331052],"about_ca_topic_score_codex":0.00001227474,"about_ca_topic_score_gemma":0.0000011292456,"teacher_disagreement_score":0.03460078,"about_ca_system_score_codex":0.000022865695,"about_ca_system_score_gemma":0.0000021154576,"threshold_uncertainty_score":0.3866495},"labels":[],"label_agreement":null},{"id":"W2038655927","doi":"10.1128/aem.00515-13","title":"ProP Is Required for the Survival of Desiccated Salmonella enterica Serovar Typhimurium Cells on a Stainless Steel Surface","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":101,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Queen's University; Irish Research Council; Queen's University Belfast","keywords":"Desiccation; Salmonella enterica; Transcriptome; Salmonella; Microbiology; Serotype; Biology; Pathogen; Biofilm; Food safety; Gene; Food science; Downregulation and upregulation; Food microbiology; Bacteria; Gene expression; Biochemistry; Genetics; Botany","score_opus":0.02490324731577286,"score_gpt":0.23384481071127733,"score_spread":0.20894156339550446,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2038655927","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99768335,0.00026751417,0.00041221053,0.0001412821,0.00014879898,0.0008743879,0.00031408135,0.0000060407,0.00015234319],"genre_scores_gemma":[0.9979342,0.00026366886,0.0005896238,0.00048331704,0.000052655094,0.0000751221,0.00028838907,0.000029480621,0.00028353246],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99903107,0.00004445797,0.00023019811,0.0003972791,0.000033462056,0.00026353303],"domain_scores_gemma":[0.99943465,0.000043902684,0.0001167184,0.00035396547,0.000008226995,0.000042517695],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010585877,0.00020013493,0.00020810807,0.000011716654,0.0000857464,0.000009500837,0.0002130689,0.00017420005,0.00004020383],"category_scores_gemma":[0.0000021875999,0.00014707532,0.000061700455,0.000024203977,0.0003569209,0.0000024462831,0.00025527034,0.00005439719,0.000021573125],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029473152,0.000086740096,0.00036789477,0.000021498987,0.00010424402,1.8131695e-7,0.000077759956,0.000044761182,0.99750483,0.00003788154,0.00073307403,0.00072642165],"study_design_scores_gemma":[0.0008328636,0.00044597147,0.0012182363,0.0000032841826,0.00002782647,0.0000070257197,0.00036099248,0.000025171124,0.98258775,0.00003817728,0.014271718,0.00018096196],"about_ca_topic_score_codex":0.000013904629,"about_ca_topic_score_gemma":0.0000014341095,"teacher_disagreement_score":0.014917039,"about_ca_system_score_codex":0.000019636784,"about_ca_system_score_gemma":0.000011770304,"threshold_uncertainty_score":0.59975576},"labels":[],"label_agreement":null},{"id":"W2038871965","doi":"10.1128/aem.72.5.3085-3095.2006","title":"Diversity and Distribution of Marine Microbial Eukaryotes in the Arctic Ocean and Adjacent Seas","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":278,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval","funders":"","keywords":"Arctic; Oceanography; Canada Basin; Ecology; Biology; Halocline; Biodiversity; Water column; Arctic ecology; Mesopelagic zone; Pelagic zone; Geology","score_opus":0.003908924242617744,"score_gpt":0.153010859837631,"score_spread":0.14910193559501325,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2038871965","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99929327,0.00008184361,0.00000553924,0.00014138939,0.000017600512,0.00017783626,0.000061013576,0.000003867227,0.00021765605],"genre_scores_gemma":[0.9991094,0.00017273062,0.00003151893,0.00025350353,0.000010186436,0.0000019827964,0.00039990494,0.0000035972664,0.000017172406],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99932826,0.000107889035,0.00013955444,0.00021652094,0.000019858826,0.00018791245],"domain_scores_gemma":[0.9997176,0.00008868097,0.00005619837,0.000114252885,4.9987506e-7,0.000022773254],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015851895,0.000121914236,0.00016333642,0.000014047004,0.00045593237,0.000002969887,0.00011726774,0.00010615819,0.0002071124],"category_scores_gemma":[0.0000020016807,0.0000982795,0.000016338092,0.00003801046,0.0011008745,0.000030047833,0.0018673639,0.00015835984,0.000005033677],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058361737,0.00013827189,0.6539725,0.000010900045,0.0000068211,0.0000017170461,0.0005111008,0.00001888098,0.34425429,0.00032117104,0.0002978667,0.00040811673],"study_design_scores_gemma":[0.0005602978,0.00008544881,0.99417526,0.0000023041473,0.000017613575,0.00006853887,0.00020886534,0.000006757846,0.0017451402,0.0016131903,0.0014055342,0.00011107262],"about_ca_topic_score_codex":0.0013331512,"about_ca_topic_score_gemma":0.0006911033,"teacher_disagreement_score":0.34250915,"about_ca_system_score_codex":0.000040292263,"about_ca_system_score_gemma":0.0000012087003,"threshold_uncertainty_score":0.4056218},"labels":[],"label_agreement":null},{"id":"W2039351268","doi":"10.1128/aem.67.12.5593-5600.2001","title":"Detection of Hepatitis A Virus by the Nucleic Acid Sequence-Based Amplification Technique and Comparison with Reverse Transcription-PCR","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":91,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Canadian Food Inspection Agency","funders":"","keywords":"NASBA; Amplicon; RNA; Biology; Oligonucleotide; Molecular biology; Nucleic acid; Digoxigenin; Virology; RNA extraction; Reverse transcription polymerase chain reaction; Recombinase Polymerase Amplification; Virus; DNA; Capsid; Reverse transcriptase; Polymerase chain reaction; Loop-mediated isothermal amplification; Gene; Messenger RNA; Biochemistry; In situ hybridization","score_opus":0.015235388622550628,"score_gpt":0.23693471156938167,"score_spread":0.22169932294683103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039351268","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99057776,0.00027533993,0.008127401,0.00042118496,0.00000815198,0.00045956505,0.00008365602,0.000012231979,0.000034712542],"genre_scores_gemma":[0.99733853,0.0012545392,0.0005853534,0.00046277783,0.000010335935,0.00009374657,0.00022887748,0.000008856679,0.00001695466],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993517,0.000060296712,0.00017658366,0.00020573483,0.00003102677,0.00017468646],"domain_scores_gemma":[0.99974954,0.000013947328,0.00006485537,0.000112637616,0.0000031599477,0.000055838922],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011327369,0.00010139416,0.00020904525,0.000033570203,0.000075761534,0.0000033244312,0.00003771004,0.00008839326,0.00003773016],"category_scores_gemma":[0.0000033794067,0.00006972428,0.000020634645,0.000036875575,0.0006016823,0.00001975989,0.000014280813,0.00014404974,0.0000037787133],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046174563,0.00007136347,0.04460689,0.000017200675,0.000018717434,0.0000018646929,0.000037053207,0.0000016065197,0.94845927,0.0000081362805,0.000095075935,0.0062211053],"study_design_scores_gemma":[0.0026207392,0.0024921105,0.11033119,0.000046690533,0.00007751887,0.0010469139,0.0003752913,0.00021018837,0.8724758,0.00006262265,0.010084888,0.0001760455],"about_ca_topic_score_codex":0.00033400833,"about_ca_topic_score_gemma":0.00010222498,"teacher_disagreement_score":0.07598345,"about_ca_system_score_codex":0.000040555617,"about_ca_system_score_gemma":0.0000053876543,"threshold_uncertainty_score":0.28432736},"labels":[],"label_agreement":null},{"id":"W2040170004","doi":"10.1128/aem.00263-11","title":"Development of a DNA Microarray for Enterococcal Species, Virulence, and Antibiotic Resistance Gene Determinations among Isolates from Poultry","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Université de Montréal; Biotechnology Research Institute","funders":"Agriculture and Agri-Food Canada","keywords":"Virulence; Biology; Enterococcus; Microbiology; Gene; Antibiotic resistance; Enterococcus faecium; Enterococcus faecalis; Microarray; DNA microarray; Genetics; Antibiotics; Escherichia coli; Gene expression","score_opus":0.012745450482193424,"score_gpt":0.19885002465044324,"score_spread":0.18610457416824983,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040170004","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997316,0.0004224687,0.00091358705,0.000014254374,0.000040226987,0.0005203974,0.0003575987,0.000013289848,0.00040216115],"genre_scores_gemma":[0.9566828,0.0001832753,0.04244368,0.00010320295,0.000023504654,0.000019612959,0.00026859384,0.000020765532,0.00025455916],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989483,0.000011229901,0.00035301503,0.00040681337,0.000027563736,0.0002530851],"domain_scores_gemma":[0.9995632,0.000053082324,0.00013898114,0.00015957585,0.0000061545943,0.00007897169],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000630062,0.00019923456,0.00035002886,0.000061870414,0.000114655704,0.000005589376,0.000079608195,0.00015641189,0.00005878734],"category_scores_gemma":[0.0000049167975,0.0001841492,0.000044166798,0.00003395428,0.00070022297,0.000031047468,0.000087950364,0.00007968665,0.000004593053],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002789957,0.00013786858,0.0471933,0.000059023696,0.00007240559,0.0000023911805,0.00097043393,2.013213e-8,0.9503684,0.00004636015,0.000078393816,0.0007924166],"study_design_scores_gemma":[0.0011106175,0.00006116126,0.23268884,0.00006420134,0.00006795583,0.000012613592,0.0008569465,0.000001074063,0.76134694,0.000055642926,0.0035594213,0.00017460476],"about_ca_topic_score_codex":0.0000074149357,"about_ca_topic_score_gemma":0.000038583545,"teacher_disagreement_score":0.18902148,"about_ca_system_score_codex":0.00005101848,"about_ca_system_score_gemma":0.000019655346,"threshold_uncertainty_score":0.75093865},"labels":[],"label_agreement":null},{"id":"W2040252548","doi":"10.1128/aem.71.5.2501-2510.2005","title":"Application of a pH-Sensitive Fluoroprobe (C-SNARF-4) for pH Microenvironment Analysis in <i>Pseudomonas aeruginosa</i> Biofilms","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":206,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; University of Guelph; Advanced Foods and Materials Network","keywords":"Biofilm; Fluorophore; Fluorescence; Chemistry; Biophysics; Pseudomonas aeruginosa; Matrix (chemical analysis); Confocal laser scanning microscopy; Bacteria; Confocal microscopy; Confocal; Analytical Chemistry (journal); Microbiology; Chromatography; Biology; Cell biology; Optics","score_opus":0.0030965557450463085,"score_gpt":0.1829566503431751,"score_spread":0.1798600945981288,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040252548","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99762505,0.00036296368,0.0010014873,0.00012043908,0.00002579956,0.0004789781,0.00029692412,0.0000050862545,0.00008327243],"genre_scores_gemma":[0.9932005,0.00035453466,0.003952462,0.00036833883,0.00009080217,0.000045714594,0.0019301081,0.000019780004,0.000037788883],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99878323,0.00002780363,0.00032688843,0.0005362725,0.00002938224,0.00029643477],"domain_scores_gemma":[0.9995518,0.000015297042,0.00014121045,0.00023521567,0.0000035202518,0.000052964126],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000115169554,0.00021722307,0.0003288203,0.0000821188,0.000056837936,0.0000060775646,0.00008463195,0.00022718748,0.000010669618],"category_scores_gemma":[0.0000018620908,0.0002147201,0.000113343405,0.00007359355,0.00026656376,0.0000039423567,0.00011964875,0.00006561379,0.000006875719],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018229459,0.00015480131,0.0022292775,0.000009590051,0.00014950805,4.14868e-7,0.000070588,0.000114107825,0.98862803,0.00004970974,0.000042570464,0.008369079],"study_design_scores_gemma":[0.0010189407,0.00015212479,0.006771912,0.0000030444337,0.00011685603,0.000019952648,0.00014352743,0.000087855224,0.9736065,0.0000061896617,0.017835079,0.00023800481],"about_ca_topic_score_codex":0.0000323777,"about_ca_topic_score_gemma":0.00005715129,"teacher_disagreement_score":0.01779251,"about_ca_system_score_codex":0.000034872948,"about_ca_system_score_gemma":0.00000619178,"threshold_uncertainty_score":0.87560314},"labels":[],"label_agreement":null},{"id":"W2040369456","doi":"10.1128/aem.00812-07","title":"No Evidence of an Impact on the Rhizosphere Diazotroph Community by the Expression of <i>Bacillus thuringiensis</i> Cry1Ab Toxin by Bt White Spruce","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Natural Resources Canada; Canadian Forest Service","funders":"","keywords":"Bacillus thuringiensis; Biology; Diazotroph; Genetically modified crops; Nitrogen fixation; Genetically modified organism; White (mutation); Rhizosphere; Genetically modified maize; Botany; Bacteria; Transgene; Gene; Genetics","score_opus":0.010203430383849734,"score_gpt":0.20011040605156072,"score_spread":0.18990697566771098,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040369456","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985745,0.0004857303,0.0000010265669,0.000122020625,0.000026117845,0.0002303095,0.0002789518,0.000010930033,0.00027039464],"genre_scores_gemma":[0.99927914,0.000064049396,0.000028086091,0.00041516207,0.00002601535,0.0000068429913,0.000112709786,0.000002301193,0.00006569976],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998982,0.00020335667,0.00024631995,0.00021836882,0.00007673968,0.00027320022],"domain_scores_gemma":[0.99894017,0.00063580606,0.0001749255,0.00018499671,0.0000053126837,0.00005879333],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00049777725,0.00018825773,0.00021527018,0.000004089241,0.000275489,0.000010523592,0.0004277287,0.00013605168,0.0002987401],"category_scores_gemma":[0.000011507654,0.000057671718,0.00007494555,0.000064082626,0.00047298527,0.000047531405,0.00020811746,0.00026037698,0.000016130787],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017325775,0.00016984632,0.0026566724,0.0000039557126,0.000013187807,2.2269572e-7,0.00014427517,6.2826365e-7,0.9933834,0.000009833919,0.0011986716,0.002246012],"study_design_scores_gemma":[0.00013965103,0.0006646083,0.016593441,0.000022911525,0.0000123483205,0.000009827344,0.0008384294,5.427456e-7,0.9808346,0.000035342095,0.00072277716,0.00012548901],"about_ca_topic_score_codex":0.00034926567,"about_ca_topic_score_gemma":0.000030245279,"teacher_disagreement_score":0.013936768,"about_ca_system_score_codex":0.000033754175,"about_ca_system_score_gemma":0.0000019217064,"threshold_uncertainty_score":0.32709947},"labels":[],"label_agreement":null},{"id":"W2040533461","doi":"10.1128/aem.00375-09","title":"Pathotype and Antibiotic Resistance Gene Distributions of <i>Escherichia coli</i> Isolates from Broiler Chickens Raised on Antimicrobial-Supplemented Diets","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Université de Montréal; Biotechnology Research Institute","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; Microbiology; Virulence; Integron; Plasmid; Antibiotic resistance; Escherichia coli; Bacitracin; Chlortetracycline; Penicillin; Antimicrobial; Gene; Antibiotics; Genetics","score_opus":0.0043400873117709115,"score_gpt":0.20006681649473576,"score_spread":0.19572672918296485,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040533461","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99633247,0.0011288362,0.00008584474,0.00027639265,0.00003005701,0.0002833593,0.0015062091,0.000008690063,0.0003481231],"genre_scores_gemma":[0.9937711,0.002604047,0.0009794731,0.00061715045,0.000044857497,0.000007035736,0.0018912043,0.000014399323,0.000070771945],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989092,0.000050703347,0.00022050818,0.00047776828,0.000035538942,0.0003063183],"domain_scores_gemma":[0.99957305,0.00002739386,0.00008998542,0.00023187166,0.0000067689452,0.00007095001],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006965591,0.00022283546,0.00026885566,0.000023872868,0.00014708455,0.000010203158,0.00010733467,0.00015336725,0.000016854265],"category_scores_gemma":[0.0000104339615,0.0002079308,0.000043073687,0.00004858005,0.00041913186,0.0000030813208,0.00015486739,0.000119714176,0.000004236788],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027516208,0.00018254138,0.0025220548,0.000010140501,0.000084216204,0.0000015678683,0.000043610762,0.0000014681168,0.99552536,0.00008271453,0.0010721087,0.00019907749],"study_design_scores_gemma":[0.0012982968,0.0004258703,0.07209346,0.000016959746,0.00003143827,0.000004141477,0.00006385097,0.0000036207718,0.91479677,0.00007652022,0.010931373,0.00025773112],"about_ca_topic_score_codex":0.000009473608,"about_ca_topic_score_gemma":0.000013678175,"teacher_disagreement_score":0.08072859,"about_ca_system_score_codex":0.000015955266,"about_ca_system_score_gemma":0.000012479869,"threshold_uncertainty_score":0.8479172},"labels":[],"label_agreement":null},{"id":"W2040965567","doi":"10.1128/aem.00370-10","title":"Bacterial Community and “ <i>Candidatus</i> Accumulibacter” Population Dynamics in Laboratory-Scale Enhanced Biological Phosphorus Removal Reactors","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"York University; National Science Foundation","keywords":"Phosphorus; Enhanced biological phosphorus removal; Population; Biology; Microbiology; Chemistry; Ecology; Environmental science; Environmental engineering; Wastewater","score_opus":0.004828282292107381,"score_gpt":0.18540448785867233,"score_spread":0.18057620556656495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040965567","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99894476,0.000020212728,0.000003145987,0.000030083564,0.00014253339,0.0002568722,0.00016215787,0.000026856245,0.00041338266],"genre_scores_gemma":[0.99709606,0.00009850278,0.001393139,0.00011432874,0.000031907628,0.000017407325,0.0012015026,0.000016873786,0.000030283021],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988954,0.00009892398,0.00023792718,0.00038683898,0.000042172218,0.00033875133],"domain_scores_gemma":[0.9995488,0.000051534524,0.00007643182,0.00021831247,6.2008235e-7,0.00010431571],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017778392,0.00025040188,0.0002648567,0.000031946325,0.0001859281,0.000024007235,0.00013756056,0.00028346758,0.000321839],"category_scores_gemma":[0.000003335969,0.0002114088,0.000027724418,0.00006654775,0.00052245246,0.00009895494,0.00034789936,0.00041582744,0.000056276982],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000098803226,0.0001284122,0.17516719,0.000001643128,0.000007128516,0.0000037420832,0.00017001668,5.631033e-7,0.8214943,0.00002219995,0.000011814272,0.0028942355],"study_design_scores_gemma":[0.0021475893,0.00021079315,0.71279633,0.000005105037,0.000024903802,0.00013989773,0.0006273633,0.000029802213,0.2795137,0.00033870863,0.0036371136,0.0005286866],"about_ca_topic_score_codex":0.00071983004,"about_ca_topic_score_gemma":0.0012172248,"teacher_disagreement_score":0.54198056,"about_ca_system_score_codex":0.00015036207,"about_ca_system_score_gemma":0.0000026284176,"threshold_uncertainty_score":0.86210006},"labels":[],"label_agreement":null},{"id":"W2042371744","doi":"10.1128/aem.03501-12","title":"Evaluating the Pathogenic Potential of Environmental Escherichia coli by Using the Caenorhabditis elegans Infection Model","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Biotechnology Research Institute; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Virulence; Pathogenic Escherichia coli; Genotyping; Bacterial adhesin; Microbiology; Escherichia coli; Caenorhabditis elegans; Pathogenic bacteria; Gene; Genetics; Genotype; Bacteria","score_opus":0.009904094687089107,"score_gpt":0.2363819812882589,"score_spread":0.2264778866011698,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042371744","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976772,0.0009716862,0.00053778087,0.00007277277,0.00003525578,0.0004936075,0.00015272405,0.0000038428875,0.00005512306],"genre_scores_gemma":[0.99802184,0.00087500457,0.0003737341,0.00025737897,0.000054865734,0.00009749038,0.0001862106,0.000019995206,0.00011350618],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999043,0.000104940606,0.00019599602,0.0003037574,0.000070462076,0.00028188352],"domain_scores_gemma":[0.99960786,0.000019752253,0.000103739374,0.00022658161,0.000004088847,0.000037969632],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017103944,0.00017423173,0.00014312041,0.000011773978,0.0003033606,0.000014274725,0.00014546429,0.00012508781,0.0000511875],"category_scores_gemma":[0.00000703034,0.00011552066,0.00005500875,0.00003307497,0.0007053056,0.000005256733,0.00037056554,0.00012241647,0.0000067206206],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023168093,0.000062527455,0.0010450148,0.000004930656,0.00007984683,1.1769865e-7,0.00006950819,0.00074782164,0.9961285,0.0000060341536,0.00024200142,0.0015905506],"study_design_scores_gemma":[0.002088976,0.0011996737,0.03658965,0.000009219421,0.00023119169,0.00010738067,0.0018296968,0.026373904,0.92781365,0.00018194113,0.0027979328,0.0007767662],"about_ca_topic_score_codex":0.000089038695,"about_ca_topic_score_gemma":0.000006531147,"teacher_disagreement_score":0.06831481,"about_ca_system_score_codex":0.00003158121,"about_ca_system_score_gemma":0.000017922912,"threshold_uncertainty_score":0.4710796},"labels":[],"label_agreement":null},{"id":"W2044694678","doi":"10.1128/aem.72.1.585-595.2006","title":"Genetic and Genomic Insights into the Role of Benzoate-Catabolic Pathway Redundancy in <i>Burkholderia xenovorans</i> LB400","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":103,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Oak Ridge National Laboratory; National Institute of Environmental Health Sciences; National Institutes of Health; U.S. Department of Energy","keywords":"Mutant; Biology; Biochemistry; Metabolic pathway; Burkholderia; Catabolism; Genetics; Chemistry; Gene; Enzyme; Bacteria","score_opus":0.0017647115662481555,"score_gpt":0.13956724339587004,"score_spread":0.13780253182962188,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2044694678","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99720776,0.0014551585,0.0000031191603,0.00005223709,0.00003527823,0.0002713814,0.00003161231,0.00000748099,0.0009359622],"genre_scores_gemma":[0.9988043,0.0006169155,0.00020952204,0.00021916835,0.00002439765,0.0000091981465,0.00006972396,0.000012621647,0.00003416938],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902433,0.000041031646,0.00029799275,0.00036006214,0.00004298204,0.00023360607],"domain_scores_gemma":[0.99967366,0.00002154149,0.00009613928,0.00016505782,5.456233e-7,0.000043050826],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000075220334,0.00017786302,0.00019603188,0.000031547108,0.000094342846,0.000011807795,0.00014706339,0.00012484365,0.00023901611],"category_scores_gemma":[7.874739e-7,0.00013243989,0.000022935263,0.00007517511,0.0007155021,0.000034598314,0.00021964737,0.0001033493,0.00007194654],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001607179,0.000064248256,0.04910196,0.0000032995906,0.0000039907823,9.0646523e-7,0.00067173503,0.000017651184,0.94433695,0.00011299498,0.00003402596,0.0056361374],"study_design_scores_gemma":[0.0008485436,0.000052473086,0.45905045,0.00000471036,0.0000123104555,0.000022994238,0.00043679788,0.000026145846,0.4931308,0.0016360951,0.044505846,0.00027280676],"about_ca_topic_score_codex":0.00067587814,"about_ca_topic_score_gemma":0.00045980886,"teacher_disagreement_score":0.45120615,"about_ca_system_score_codex":0.000051497704,"about_ca_system_score_gemma":0.0000048383326,"threshold_uncertainty_score":0.5400742},"labels":[],"label_agreement":null},{"id":"W2045223263","doi":"10.1128/aem.00851-10","title":"Inhibition of <i>Salmonella</i> Host Cell Invasion by Dimethyl Sulfide","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Salmonella; Dimethyl sulfoxide; Biology; Dimethyl sulfide; Pathogenicity island; Microbiology; Enterobacteriaceae; Host (biology); Escherichia coli; Gene; Biochemistry; Bacteria; Chemistry; Genetics; Sulfur","score_opus":0.004615501780802816,"score_gpt":0.15864274784962953,"score_spread":0.15402724606882673,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045223263","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99808824,0.00024760023,0.000002600039,0.00014015468,0.00009321468,0.00014329155,0.00020974824,0.000018199346,0.0010569653],"genre_scores_gemma":[0.99813765,0.00030332318,0.00007677494,0.00051497895,0.00006176554,0.000010210182,0.0008239923,0.0000017679711,0.00006953417],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99907863,0.000046093286,0.00024831612,0.0003468283,0.0000298278,0.0002503],"domain_scores_gemma":[0.9995642,0.00017014064,0.000121945515,0.00006440507,0.0000023204698,0.00007703604],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015331611,0.00016087989,0.00024476642,0.000008830745,0.00008660299,0.000005501265,0.00010137855,0.00025665908,0.0003221938],"category_scores_gemma":[0.000003969914,0.00007386973,0.000050294388,0.00004825197,0.00032741547,0.00002739908,0.00012244128,0.00018674025,0.000048552538],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023489165,0.00010288223,0.014098045,0.0000034419286,0.000004652598,6.340699e-7,0.00002638849,1.1195884e-7,0.9811038,0.000041985415,0.0007127649,0.003881828],"study_design_scores_gemma":[0.0002525643,0.00015229115,0.03651516,0.0000019273052,0.000010973918,0.000025432431,0.00018571415,7.7902934e-7,0.9467028,0.00024653543,0.015732938,0.0001729174],"about_ca_topic_score_codex":0.00008057685,"about_ca_topic_score_gemma":0.000031167154,"teacher_disagreement_score":0.03440101,"about_ca_system_score_codex":0.000007312886,"about_ca_system_score_gemma":0.0000014792023,"threshold_uncertainty_score":0.35277963},"labels":[],"label_agreement":null},{"id":"W2046111236","doi":"10.1128/aem.02188-09","title":"Quantification of Nitrogen Reductase and Nitrite Reductase Genes in Soil of Thinned and Clear-Cut Douglas-Fir Stands by Using Real-Time PCR","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Soil Carbon and Nitrogen Dynamics","field":"Agricultural and Biological Sciences","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Natural Resources Canada; Canadian Forest Service","funders":"Canadian Forest Service; U.S. Forest Service","keywords":"Nitrite reductase; Biology; Abundance (ecology); Nitrogen fixation; Cycling; Denitrification; Nitrogen cycle; Botany; Soil carbon; Nutrient; Nitrogen; Ecology; Soil water; Nitrite; Chemistry; Nitrate; Forestry; Bacteria","score_opus":0.006745001570583704,"score_gpt":0.18495789978171437,"score_spread":0.17821289821113068,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046111236","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99879354,0.00048135006,2.4836075e-7,0.00007672505,0.000030377583,0.00015231347,0.00042484904,0.0000077759005,0.000032807045],"genre_scores_gemma":[0.99824923,0.0010608268,0.00016925452,0.00004099369,0.000020565183,0.000004167412,0.0004452243,0.0000023377595,0.0000073753167],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992117,0.000039726314,0.00025215163,0.0002923368,0.000036618098,0.00016742431],"domain_scores_gemma":[0.9996876,0.000060061477,0.00012760247,0.000062784995,0.0000041901526,0.000057773126],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000169823,0.00013614447,0.00023930888,0.000021270105,0.00006630975,0.00000864886,0.000069489826,0.0001542949,0.000035054167],"category_scores_gemma":[0.0000037053305,0.00007502031,0.000024147075,0.00006815051,0.00051069,0.00003430281,0.00008663393,0.000107631065,0.0000010193658],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012000605,0.000077258235,0.014364766,0.0000074823815,0.000011589327,5.8603666e-7,0.000066525135,9.401631e-7,0.9820671,0.00005190836,0.00002393281,0.0032079066],"study_design_scores_gemma":[0.0006730114,0.00021286435,0.016251232,0.000008743554,0.000033600318,0.000078700665,0.00086177903,0.0003566605,0.98051,0.00042160312,0.00034475836,0.00024702933],"about_ca_topic_score_codex":0.00052407075,"about_ca_topic_score_gemma":0.0001250315,"teacher_disagreement_score":0.0029608773,"about_ca_system_score_codex":0.000010389246,"about_ca_system_score_gemma":0.0000034139614,"threshold_uncertainty_score":0.30592397},"labels":[],"label_agreement":null},{"id":"W2046117417","doi":"10.1128/aem.02223-14","title":"Sensitive, Efficient Quantitation of <sup>13</sup> C-Enriched Nucleic Acids via Ultrahigh-Performance Liquid Chromatography–Tandem Mass Spectrometry for Applications in Stable Isotope Probing","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Environmental DNA in Biodiversity Studies","field":"Environmental Science","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Genome British Columbia; Genome Canada","keywords":"Nucleic acid; Chemistry; Stable-isotope probing; Nucleic acid quantitation; Cytosine; Guanine; Uracil; Mass spectrometry; Chromatography; Tandem mass spectrometry; Thymine; DNA; Nucleobase; RNA; Nucleotide; Biochemistry; Biology; Bacteria","score_opus":0.004698183663718269,"score_gpt":0.17568211685163534,"score_spread":0.17098393318791708,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046117417","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9882403,0.000063270745,0.009980415,0.00002661806,0.0000209064,0.0010386048,0.00008293724,0.00002609673,0.00052087154],"genre_scores_gemma":[0.9913197,0.0001722024,0.008035394,0.00008821228,0.000014802235,0.00011502183,0.00020925057,0.000021372085,0.000024022635],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984762,0.000045935416,0.00035153958,0.0005926009,0.00009782299,0.00043590338],"domain_scores_gemma":[0.9994248,0.000119274744,0.0001645711,0.00022340687,0.0000016187937,0.000066313405],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00024782438,0.00027796085,0.00036383432,0.00010599469,0.00025729375,0.0000087889275,0.0001813508,0.0001526577,0.00008474322],"category_scores_gemma":[0.0000035592009,0.0002745569,0.000066162625,0.00020344018,0.0008008316,0.00007842324,0.00021347584,0.00013533465,0.00007568032],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006038886,0.00019301259,0.14624095,0.00003298115,0.00002803698,2.2021068e-7,0.00048721404,0.0050214417,0.84759784,0.000061949526,0.000022542832,0.00025341497],"study_design_scores_gemma":[0.0025871699,0.0009375509,0.5424125,0.000025118765,0.000096218646,0.000017320175,0.003131079,0.004588271,0.44333434,0.00015098423,0.0019175457,0.00080184644],"about_ca_topic_score_codex":0.00003203926,"about_ca_topic_score_gemma":0.000006376796,"teacher_disagreement_score":0.4042635,"about_ca_system_score_codex":0.00020349548,"about_ca_system_score_gemma":0.000001619643,"threshold_uncertainty_score":0.9999707},"labels":[],"label_agreement":null},{"id":"W2047138471","doi":"10.1128/aem.00405-12","title":"Diversity of Integron- and Culture-Associated Antibiotic Resistance Genes in Freshwater Floc","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Environment and Climate Change Canada; McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Integron; Bacteria; Antibiotic resistance; Biology; Aquatic ecosystem; Gene cassette; Microbiology; Resistance (ecology); Microorganism; Gene; Ecology; Genetics","score_opus":0.009991361278602826,"score_gpt":0.20475965435286367,"score_spread":0.19476829307426086,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047138471","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997587,0.0007893555,0.0000068930344,0.000056698413,0.00004160651,0.0001476548,0.00006805674,0.000008441076,0.0012942908],"genre_scores_gemma":[0.99836105,0.0007412206,0.00029786877,0.0002679203,0.000010607571,0.0000010194858,0.000046392655,0.000009377199,0.00026455335],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990326,0.000043325734,0.00018908948,0.00027159,0.00005902174,0.0004043353],"domain_scores_gemma":[0.99967307,0.000026436359,0.00006523554,0.000097755525,2.5353057e-7,0.00013727022],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001535482,0.00018000277,0.00023269394,0.000023877114,0.00015432277,0.0000035703044,0.00010288823,0.0001312844,0.00033336013],"category_scores_gemma":[0.0000034294662,0.0001483268,0.0000253849,0.00005213054,0.00086926867,0.000109649474,0.0010930225,0.00013521525,0.000050989427],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019221869,0.00017105344,0.41744226,0.000007680442,0.000009847303,0.0000013394595,0.000642269,0.0000024727076,0.5809737,0.000026125272,0.00010087353,0.0006031556],"study_design_scores_gemma":[0.0010562885,0.0000650125,0.78388715,0.000021789527,0.000036656587,0.000021499993,0.00045124092,0.000013903157,0.20846684,0.00023121116,0.005420731,0.0003276562],"about_ca_topic_score_codex":0.00008464748,"about_ca_topic_score_gemma":0.00012662135,"teacher_disagreement_score":0.37250686,"about_ca_system_score_codex":0.00009667638,"about_ca_system_score_gemma":7.8290856e-7,"threshold_uncertainty_score":0.6048591},"labels":[],"label_agreement":null},{"id":"W2047302888","doi":"10.1128/aem.00246-10","title":"Use of a Mixture of Surrogates for Infectious Bioagents in a Standard Approach to Assessing Disinfection of Environmental Surfaces","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Environmental science; Water disinfection; Biochemical engineering; Environmental engineering; Engineering","score_opus":0.019324362047841052,"score_gpt":0.2475765192725387,"score_spread":0.22825215722469766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047302888","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980915,0.00008729105,0.00059331564,0.000004125248,0.00006955664,0.00040312286,0.0007029694,0.0000021530784,0.00004596139],"genre_scores_gemma":[0.99644953,0.00007227184,0.0029505615,0.000019552554,0.000015868485,0.00002367606,0.0004458671,0.000015847665,0.0000068345385],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992383,0.00002816765,0.00027525384,0.00028263053,0.000029543742,0.00014610768],"domain_scores_gemma":[0.99962896,0.000021641305,0.00014506704,0.00016944189,0.000002928131,0.000031977394],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012060634,0.00013823545,0.00024966954,0.000050869796,0.00002541743,0.0000042833817,0.00007202557,0.00020029243,0.0000054726247],"category_scores_gemma":[0.000007536544,0.00013244523,0.000050525556,0.00003173513,0.000302473,0.0000063532952,0.00016764723,0.000059723552,2.3186743e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020545605,0.00020535168,0.053988744,0.00003938434,0.000034174995,5.468705e-8,0.00008994493,0.0001149115,0.94335127,0.000016461936,0.0000062679665,0.0019479987],"study_design_scores_gemma":[0.0007454452,0.0003330606,0.046761263,0.0000053235462,0.000019867915,0.0000148994,0.00014710845,0.000014732981,0.95063716,0.000016378908,0.0011765149,0.00012821543],"about_ca_topic_score_codex":0.000015900567,"about_ca_topic_score_gemma":0.00002342766,"teacher_disagreement_score":0.007285942,"about_ca_system_score_codex":0.00001549103,"about_ca_system_score_gemma":0.000008821244,"threshold_uncertainty_score":0.540096},"labels":[],"label_agreement":null},{"id":"W2048464756","doi":"10.1128/aem.70.6.3541-3551.2004","title":"Molecular Profiling of Rhizosphere Microbial Communities Associated with Healthy and Diseased Black Spruce ( <i>Picea mariana</i> ) Seedlings Grown in a Nursery","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Université de Montréal; Natural Resources Canada; Espace pour la vie","funders":"","keywords":"Biology; Rhizosphere; Gammaproteobacteria; Botany; Actinobacteria; Black spruce; Acidobacteria; Ribosomal RNA; Ribosomal DNA; Seedling; 16S ribosomal RNA; Phylogenetic tree; Bacteria; Ecology; Gene; Taiga; Genetics","score_opus":0.00321115788036834,"score_gpt":0.1649592947962918,"score_spread":0.16174813691592344,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048464756","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976465,0.0008803024,0.000044095057,0.00003826198,0.000013466703,0.00026215037,0.0010192546,0.000005907575,0.00009006085],"genre_scores_gemma":[0.9967534,0.00036879984,0.00029139908,0.0005020786,0.000012468316,0.000014151244,0.0020319724,0.000019039193,0.00000667668],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99923676,0.000042462318,0.0001879913,0.0002580175,0.000028863358,0.0002459245],"domain_scores_gemma":[0.9996821,0.000014351389,0.00008927394,0.00013619025,0.0000037081581,0.000074322306],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000061857485,0.00018614919,0.00022909344,0.000026736374,0.000057930945,0.000007850334,0.00008165389,0.00015384555,0.000004354417],"category_scores_gemma":[0.0000031099294,0.00017242732,0.000031558782,0.000036979174,0.00046337285,0.0000039135425,0.00010213785,0.00009969955,9.724764e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004116614,0.00019314713,0.03189524,0.000035709247,0.00005430364,0.000009545557,0.000089989066,0.00015088488,0.966999,0.000079090016,0.000007170206,0.00007427758],"study_design_scores_gemma":[0.0103358915,0.001544297,0.14327525,0.00019319939,0.00020012818,0.00015490953,0.003897573,0.00002884205,0.83874285,0.00022135334,0.00035444243,0.0010512458],"about_ca_topic_score_codex":0.000060330683,"about_ca_topic_score_gemma":0.00010403684,"teacher_disagreement_score":0.1282561,"about_ca_system_score_codex":0.00002245119,"about_ca_system_score_gemma":0.00003196775,"threshold_uncertainty_score":0.70313823},"labels":[],"label_agreement":null},{"id":"W2049321680","doi":"10.1128/aem.69.1.607-615.2003","title":"Bacteria Associated with Cysts of the Soybean Cyst Nematode ( <i>Heterodera glycines</i> )","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Nematode management and characterization studies","field":"Agricultural and Biological Sciences","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Soybean cyst nematode; Biology; Heterodera; Bacteria; Cyst; Microbiology; Temperature gradient gel electrophoresis; Nematode; Nutrient agar; 16S ribosomal RNA; Botany; Agar plate; Agar; Genetics; Ecology; Pathology","score_opus":0.004652602254615833,"score_gpt":0.13887156958305233,"score_spread":0.1342189673284365,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049321680","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985061,0.000037081787,0.0000019409326,0.0001349615,0.00004142171,0.00017228878,0.00007205432,0.0000125195875,0.0010215978],"genre_scores_gemma":[0.9992063,0.000030815423,0.000009959383,0.00037835806,0.000012004239,0.000011882204,0.00017676924,0.0000013365816,0.0001725911],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994356,0.00004306144,0.00014275564,0.00018776828,0.000034966764,0.00015585024],"domain_scores_gemma":[0.9997795,0.00003659216,0.00011157161,0.000048624977,0.000002536061,0.000021137488],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000058315723,0.0001241649,0.0001724412,0.000004437766,0.00015445633,0.000010777851,0.0000892462,0.0000532972,0.00012854123],"category_scores_gemma":[0.0000022559273,0.000041426705,0.000029799361,0.000065274595,0.00019134142,0.000022813638,0.00008035546,0.00004648025,0.0000061125907],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012184319,0.00005973073,0.015704487,0.0000032567311,0.000030568845,4.346663e-7,0.000044607787,3.768002e-7,0.98349327,0.00032909896,0.000084958985,0.00023702557],"study_design_scores_gemma":[0.001245334,0.00023784811,0.7918581,0.00003797587,0.00008426217,0.00006144536,0.0013876337,0.0000017266999,0.17588711,0.000286269,0.028426412,0.00048592608],"about_ca_topic_score_codex":0.0000037827492,"about_ca_topic_score_gemma":0.000029441964,"teacher_disagreement_score":0.80760616,"about_ca_system_score_codex":0.000008616226,"about_ca_system_score_gemma":9.5189665e-7,"threshold_uncertainty_score":0.1689332},"labels":[],"label_agreement":null},{"id":"W2049455310","doi":"10.1128/aem.02461-09","title":"Transcriptome Analysis of <i>Escherichia coli</i> O157:H7 Exposed to Lysates of Lettuce Leaves","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":119,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of British Columbia; U.S. Department of Agriculture","keywords":"Biology; Virulence; Transcriptome; Escherichia coli; Microbiology; Regulon; Gene; Leafy; Gene expression profiling; Pathogen; Microarray analysis techniques; Gene expression; Botany; Biochemistry","score_opus":0.004953346242932095,"score_gpt":0.20716509499008762,"score_spread":0.20221174874715553,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049455310","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987695,0.00029060253,0.00007533511,0.00007193414,0.000038054237,0.00021120803,0.0001985164,0.000004633672,0.00034021278],"genre_scores_gemma":[0.99799496,0.0002716388,0.0010724845,0.00029640822,0.000027170003,0.000032181724,0.0001872771,0.000014728282,0.00010312411],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99906653,0.00003340796,0.00025015394,0.00035217387,0.000048764814,0.0002489864],"domain_scores_gemma":[0.9995475,0.000026383897,0.00007837584,0.00026251917,0.000008089313,0.000077177065],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012930848,0.00016920656,0.00037118432,0.00009176616,0.000049756956,0.0000037383938,0.00018089419,0.00015635166,0.000045384295],"category_scores_gemma":[0.000010758363,0.00015496204,0.00010539775,0.00016162162,0.0005098263,0.0000020515288,0.00017975291,0.00011823619,0.0000030668757],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011161267,0.0001275673,0.008502299,0.000014228982,0.0006089084,3.6031167e-7,0.00021612046,0.000016780374,0.98987645,0.00009469879,0.0001099706,0.00032097445],"study_design_scores_gemma":[0.00039818176,0.00023625632,0.029004574,0.0000016203819,0.00015301898,0.0000016245972,0.00032919378,0.0000044014037,0.96223825,0.00000827881,0.0074702175,0.00015440412],"about_ca_topic_score_codex":0.00002108667,"about_ca_topic_score_gemma":0.0000742184,"teacher_disagreement_score":0.027638251,"about_ca_system_score_codex":0.0000057266298,"about_ca_system_score_gemma":0.00001219446,"threshold_uncertainty_score":0.6319169},"labels":[],"label_agreement":null},{"id":"W2049739453","doi":"10.1128/aem.70.8.4596-4603.2004","title":"Characterization of a Galactokinase-Positive Recombinant Strain of <i>Streptococcus thermophilus</i>","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agropur cooperative; Université Laval","funders":"","keywords":"Galactokinase; Streptococcus thermophilus; Streptococcus salivarius; Galactose; Biology; Lactose; Biochemistry; Operon; Microbiology; Escherichia coli; Bacteria; Lactobacillus; Gene; Genetics; Streptococcus; Fermentation","score_opus":0.002917397336256726,"score_gpt":0.16166250948513158,"score_spread":0.15874511214887485,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049739453","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989273,0.00017835513,0.000075865995,0.000028743989,0.00003550906,0.00017825639,0.00040608275,8.4440495e-7,0.00016907077],"genre_scores_gemma":[0.99876887,0.00048599378,0.00010930615,0.00006676213,0.000018661827,0.000011581956,0.0005157997,0.000009223468,0.000013825013],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995149,0.000011747085,0.00015911258,0.00019006882,0.000015119515,0.000109099055],"domain_scores_gemma":[0.99976164,0.000003982714,0.00010212684,0.000108419605,0.0000033275041,0.000020514568],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000036803984,0.00010343144,0.00015004739,0.000015616344,0.00002740473,0.0000012537816,0.000054839664,0.00008642624,0.0000060021243],"category_scores_gemma":[9.849842e-7,0.00009435449,0.000034745575,0.000015337342,0.00022427631,3.8075726e-7,0.000081742466,0.000028744109,0.0000010366031],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041828713,0.00008879804,0.0019717428,0.000008782551,0.000050818686,2.7911724e-7,0.000120105986,0.000007643023,0.99641937,0.00018415974,0.0000018090466,0.001104688],"study_design_scores_gemma":[0.0006097819,0.00027590556,0.06629988,0.0000047728854,0.000015850857,0.000008876411,0.000099247765,1.4924633e-7,0.9319856,0.00017111703,0.0004385125,0.00009031178],"about_ca_topic_score_codex":0.000006299068,"about_ca_topic_score_gemma":0.0000018766741,"teacher_disagreement_score":0.06443375,"about_ca_system_score_codex":0.000006975694,"about_ca_system_score_gemma":0.000008977515,"threshold_uncertainty_score":0.38476643},"labels":[],"label_agreement":null},{"id":"W2049791807","doi":"10.1128/aem.68.12.5834-5842.2002","title":"A Multiresistant Clone of Shiga Toxin-Producing <i>Escherichia coli</i> O118:[H16] Is Spread in Cattle and Humans over Different European Countries","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Public Health Agency of Canada","keywords":"Microbiology; Biology; Nalidixic acid; Tetracycline; Kanamycin; Escherichia coli; Plasmid; Multilocus sequence typing; Ampicillin; Antibiotic resistance; Virology; Genetics; Gene; Antibiotics; Genotype","score_opus":0.007556337353124658,"score_gpt":0.20104812328274832,"score_spread":0.19349178592962366,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049791807","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955697,0.0031176484,0.000007787428,0.000101901554,0.000024176521,0.000242066,0.0001327772,0.000005092799,0.0007988506],"genre_scores_gemma":[0.99352753,0.005531206,0.00012440833,0.00044287735,0.000041204137,0.000022088592,0.00006550648,0.000022673441,0.00022251345],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99889195,0.00006728883,0.0002308135,0.000467683,0.000046438698,0.000295842],"domain_scores_gemma":[0.99962926,0.000022445434,0.00007098506,0.00021803445,0.0000033794763,0.000055903784],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000111744885,0.00020565961,0.0002600719,0.00003225851,0.00008554546,0.000010015787,0.00010411563,0.0000914785,0.0000624586],"category_scores_gemma":[0.0000073377682,0.00018340151,0.00003151164,0.000031640793,0.00055496127,0.0000027368717,0.0003581831,0.000116937255,0.0000059549006],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000065261316,0.00011800206,0.024655052,0.000041105894,0.000052098294,0.00000240837,0.00061960076,0.0000015784416,0.973523,0.000024210478,0.00052322535,0.00037444627],"study_design_scores_gemma":[0.0025267168,0.00046708307,0.31267607,0.000032370957,0.00003893246,0.00001261498,0.0006863989,0.000016128894,0.6514351,0.000014625621,0.03158526,0.00050872494],"about_ca_topic_score_codex":0.00004297583,"about_ca_topic_score_gemma":0.00006144961,"teacher_disagreement_score":0.32208794,"about_ca_system_score_codex":0.00002239886,"about_ca_system_score_gemma":0.000003406996,"threshold_uncertainty_score":0.7478897},"labels":[],"label_agreement":null},{"id":"W2049900485","doi":"10.1128/aem.71.10.6260-6266.2005","title":"Functional Characterization of the Proteolytic System of<i>Lactobacillus sanfranciscensis</i>DSM 20451<sup>T</sup>during Growth in Sourdough","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Proteolysis; Biochemistry; Biology; Peptide; Amino acid; Fermentation; Enzyme","score_opus":0.0040976075392088985,"score_gpt":0.1342376360994789,"score_spread":0.13014002856027,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049900485","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99918735,0.000048798312,0.0000037237094,0.00016136141,0.000028450224,0.00030082592,0.00013782184,0.0000075429193,0.00012414147],"genre_scores_gemma":[0.99963605,0.00003777204,0.000017359413,0.000066111315,0.000056721867,0.000012438998,0.00013758041,0.0000013626905,0.000034601257],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992954,0.000030115507,0.00025421183,0.00020408696,0.00004360929,0.00017254119],"domain_scores_gemma":[0.9997911,0.000017240598,0.00011758773,0.00004585128,0.0000033581007,0.000024854407],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007183066,0.0001159762,0.00018046034,0.0000121105695,0.00007540279,0.0000042068477,0.00009969557,0.00011314035,0.00005097625],"category_scores_gemma":[0.0000013977769,0.00004882684,0.000046495188,0.000080804486,0.00016113548,0.00002981906,0.000107166015,0.0000937014,0.0000069874],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042356303,0.00007556984,0.008321252,0.0000223973,0.000010835737,1.7507341e-7,0.00008155985,0.000030865787,0.98968357,0.00017020712,0.0000028408906,0.001558377],"study_design_scores_gemma":[0.00056347146,0.000071376286,0.54108083,0.000035373338,0.000014253933,0.000034444798,0.00036384587,0.00009521563,0.45717856,0.00002141536,0.00039542673,0.00014577532],"about_ca_topic_score_codex":0.000014734273,"about_ca_topic_score_gemma":0.0000060048287,"teacher_disagreement_score":0.53275955,"about_ca_system_score_codex":0.00004392821,"about_ca_system_score_gemma":0.0000024937221,"threshold_uncertainty_score":0.19911008},"labels":[],"label_agreement":null},{"id":"W2049959280","doi":"10.1128/aem.04101-14","title":"Metatranscriptomic Evidence for Co-Occurring Top-Down and Bottom-Up Controls on Toxic Cyanobacterial Communities","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Aquatic Ecosystems and Phytoplankton Dynamics","field":"Environmental Science","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Environment and Climate Change Canada","funders":"Oak Ridge National Laboratory; National Science Foundation","keywords":"Biology; Microcystis; Cyanobacteria; Microcystin; Eutrophication; Algal bloom; Microcystis aeruginosa; Dominance (genetics); Ecology; Nutrient; Anabaena; Phytoplankton; Bacteria; Gene","score_opus":0.03003311242003562,"score_gpt":0.2443767684996535,"score_spread":0.2143436560796179,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049959280","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978376,0.00017716378,0.00032495265,0.000055602002,0.00022616774,0.00055336946,0.0002919848,0.000019083545,0.00051407167],"genre_scores_gemma":[0.9985424,0.000089188274,0.00032546735,0.000652586,0.00005679378,0.00008180285,0.00014120237,0.000016884469,0.00009367113],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99904984,0.000061768354,0.00024335666,0.0002930591,0.000052909763,0.00029903807],"domain_scores_gemma":[0.9993769,0.00021267284,0.000088953006,0.00019462963,8.7387673e-7,0.00012600499],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002946599,0.00021723403,0.00031327875,0.000022017062,0.00016297592,0.000030480564,0.00014566672,0.00012372195,0.00015274932],"category_scores_gemma":[0.0000057764582,0.00019090032,0.000038168673,0.000018385432,0.00041121678,0.00008542035,0.0001046508,0.00013182753,0.00007359044],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041010056,0.00006216452,0.04152351,0.000028032213,0.000046538815,0.0000011412255,0.0014309279,0.000077566576,0.9532246,0.00074509665,0.0005840236,0.0018663186],"study_design_scores_gemma":[0.049515773,0.009156913,0.1372653,0.0005783188,0.001066937,0.0012621289,0.031038083,0.010648072,0.21617262,0.009931682,0.52597964,0.0073845643],"about_ca_topic_score_codex":0.00012544233,"about_ca_topic_score_gemma":0.00011144947,"teacher_disagreement_score":0.73705196,"about_ca_system_score_codex":0.000109133834,"about_ca_system_score_gemma":0.000006147919,"threshold_uncertainty_score":0.7784689},"labels":[],"label_agreement":null},{"id":"W2050633946","doi":"10.1128/aem.01279-12","title":"Evaluation of Gene Modification Strategies for the Development of Low-Alcohol-Wine Yeasts","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fermentation and Sensory Analysis","field":"Agricultural and Biological Sciences","cited_by":116,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Alberta Water Research Institute","keywords":"Wine; Acetaldehyde; Food science; Yeast; Acetoin; Fermentation; Ethanol; Flavor; Alcohol dehydrogenase; Chemistry; Sugar; Ethanol fermentation; Ethanol fuel; Alcohol; Malolactic fermentation; Biochemistry; Biology; Bacteria","score_opus":0.050612549925586565,"score_gpt":0.248196471506539,"score_spread":0.19758392158095245,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050633946","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99930096,0.00016925816,0.00011971363,0.000055196742,0.0000182277,0.00020431197,0.000037357106,0.0000022756747,0.00009268457],"genre_scores_gemma":[0.999258,0.000013658001,0.0003145173,0.000027881204,0.000028743492,0.000032028904,0.00031400358,4.2551883e-7,0.000010765887],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99960154,0.00002863739,0.00015495832,0.00008138602,0.000049904924,0.00008356174],"domain_scores_gemma":[0.99981564,0.000052584364,0.00008271176,0.000025792491,0.000007695639,0.000015583872],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035909167,0.000052364092,0.00007945363,0.0000055350915,0.00007218036,0.0000026609189,0.00004590274,0.00003636991,0.00012998743],"category_scores_gemma":[0.0000019444012,0.000020109524,0.0000237757,0.000028754743,0.00011234953,0.000026137839,0.000013675655,0.000015596544,0.0000034930736],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001179425,0.00005851093,0.0005095419,0.0000027298488,0.000029528714,1.3376206e-9,0.00039583884,0.000048562128,0.96483594,0.00016151057,0.0000066294538,0.033939436],"study_design_scores_gemma":[0.00039906803,0.00004270752,0.22805996,0.000002339997,0.00012778642,0.0000017302856,0.009855222,0.0002991356,0.7600908,0.00016148425,0.00085765525,0.00010209235],"about_ca_topic_score_codex":0.0000052668033,"about_ca_topic_score_gemma":0.000012055132,"teacher_disagreement_score":0.22755042,"about_ca_system_score_codex":0.000013841448,"about_ca_system_score_gemma":0.0000037778454,"threshold_uncertainty_score":0.14232713},"labels":[],"label_agreement":null},{"id":"W2050676296","doi":"10.1128/aem.70.6.3700-3705.2004","title":"Isolation and Phylogenetic Analysis of Novel Viruses Infecting the Phytoplankton <i>Phaeocystis globosa</i> (Prymnesiophyceae)","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"European Commission","keywords":"Biology; Phylogenetic tree; Phytoplankton; Algae; Host (biology); Algal bloom; Botany; Zoology; Ecology; Gene; Genetics; Nutrient","score_opus":0.006785322057234507,"score_gpt":0.20162782009786354,"score_spread":0.19484249804062903,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050676296","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998155,0.00011333008,0.001051025,0.000052339154,0.00004581743,0.00015589721,0.000106337975,0.000009228123,0.00031105243],"genre_scores_gemma":[0.998709,0.00012559946,0.0006610131,0.00039981824,0.000015809032,0.000009683408,0.000057885907,0.000008491029,0.000012678262],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992964,0.00001513145,0.00020124049,0.00028504158,0.000029094243,0.0001730769],"domain_scores_gemma":[0.99965906,0.000046385027,0.00011610888,0.00014073715,7.7620354e-7,0.000036902416],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006559102,0.00014398093,0.000201277,0.000040639,0.0001689067,0.000013013927,0.00007999452,0.00007891654,0.00019531087],"category_scores_gemma":[0.000001994794,0.00011046567,0.000051755695,0.00014574834,0.00047065463,0.000051790328,0.00019884619,0.00008964071,0.000017546963],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014662943,0.00008087704,0.015577402,0.0000030157653,0.00009390066,3.9978292e-7,0.00028574586,0.0012085971,0.9809595,0.000036924535,0.0000060459624,0.0017329439],"study_design_scores_gemma":[0.0011209267,0.00013818732,0.8023107,0.00000869811,0.0006012086,0.00012459313,0.0004416143,0.00013091101,0.19205861,0.000079411424,0.0026734886,0.00031165415],"about_ca_topic_score_codex":0.00039998424,"about_ca_topic_score_gemma":0.00018380095,"teacher_disagreement_score":0.78890085,"about_ca_system_score_codex":0.00005398328,"about_ca_system_score_gemma":0.0000022169538,"threshold_uncertainty_score":0.45046592},"labels":[],"label_agreement":null},{"id":"W2050736029","doi":"10.1128/aem.02589-07","title":"Cinnamic Acid, an Autoinducer of Its Own Biosynthesis, Is Processed via Hca Enzymes in <i>Photorhabdus luminescens</i>","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Entomopathogenic Microorganisms in Pest Control","field":"Agricultural and Biological Sciences","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centre National de la Recherche Scientifique; Institut national de la recherche scientifique; Pasteur Foundation","keywords":"Photorhabdus luminescens; Biology; Biochemistry; Bacteria; Escherichia coli; Enzyme; Biosynthesis; Metabolic pathway; Microbiology; Cinnamic acid; Photorhabdus; Gene","score_opus":0.006499246307937089,"score_gpt":0.16126787730024514,"score_spread":0.15476863099230806,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050736029","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99763554,0.001524101,0.0000019913307,0.00014394749,0.00003958485,0.00032932998,0.00019881499,0.00002657848,0.0001000948],"genre_scores_gemma":[0.99838835,0.0005864964,0.00009467562,0.00061927777,0.000051830524,0.000025949774,0.00017426054,0.0000038347816,0.0000553519],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986944,0.00005022507,0.00033630835,0.00050661236,0.000056845718,0.0003555875],"domain_scores_gemma":[0.99964267,0.000048510297,0.00013138483,0.00009451913,0.0000051683605,0.000077731886],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010893899,0.0002417371,0.00034752232,0.000026053278,0.00011170901,0.0000072544517,0.00024374382,0.00024331301,0.0005170471],"category_scores_gemma":[0.000004339815,0.0001210231,0.00004976475,0.00011960897,0.00029488682,0.00007718919,0.000108196655,0.00013439362,0.000037493188],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040491755,0.00022528473,0.0044960524,0.000009676426,0.0000113868155,0.0000069424423,0.00025904804,3.33669e-7,0.9888373,0.000015622934,0.000036168465,0.0060616676],"study_design_scores_gemma":[0.00042619568,0.0001579647,0.031108378,0.0000080038835,0.000012100092,0.00016185238,0.00020510568,0.000009158782,0.96525055,0.00002611467,0.0023902592,0.00024431644],"about_ca_topic_score_codex":0.000048453472,"about_ca_topic_score_gemma":0.0000729142,"teacher_disagreement_score":0.026612325,"about_ca_system_score_codex":0.000037882397,"about_ca_system_score_gemma":0.000007523078,"threshold_uncertainty_score":0.5661304},"labels":[],"label_agreement":null},{"id":"W2051024501","doi":"10.1128/aem.00928-06","title":"Inactivation of Adhesion and Invasion of Food-Borne <i>Listeria monocytogenes</i> by Bacteriocin-Producing <i>Bifidobacterium</i> Strains of Human Origin","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":115,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Cégep de Lévis; Dawson College; Cegep de Thetford; Cegep de Trois-Rivieres; Université Laval","funders":"","keywords":"Listeria; Listeria monocytogenes; Microbiology; Bacteriocin; Biology; Bifidobacterium; Strain (injury); Bacteria; Lactobacillus; Antimicrobial; Genetics","score_opus":0.019004368774687534,"score_gpt":0.23227780629362244,"score_spread":0.2132734375189349,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051024501","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998685,0.00040812427,0.000055720517,0.000013082473,0.000044074313,0.00022112402,0.0004500696,0.000003519521,0.00011926165],"genre_scores_gemma":[0.9975844,0.00023308228,0.00035245152,0.000047526657,0.000036870173,0.00000921666,0.0016929533,0.000020464375,0.000023049182],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99894017,0.00004220128,0.00042422736,0.00039958203,0.000036315396,0.00015753045],"domain_scores_gemma":[0.9993848,0.000008803914,0.0003083388,0.00026075408,0.0000074063855,0.0000298812],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010791628,0.00018721283,0.00030308586,0.000034943074,0.00004654509,0.0000036748202,0.00010224001,0.00019617948,0.00000976444],"category_scores_gemma":[0.0000022000643,0.00018527913,0.000039399416,0.000033530272,0.00037820433,0.0000069312255,0.0002540478,0.000045249173,2.797508e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013074424,0.00010552413,0.005836468,0.00007564269,0.00003361905,1.2331212e-7,0.00004968986,0.0000027734884,0.992921,0.000085413834,0.000058337544,0.0007006606],"study_design_scores_gemma":[0.0007773499,0.0006444685,0.02195084,0.000014323706,0.000023377308,0.000015095905,0.00008469935,3.8326863e-7,0.9747987,0.000043241016,0.0014911677,0.000156352],"about_ca_topic_score_codex":0.0000660863,"about_ca_topic_score_gemma":0.000014410602,"teacher_disagreement_score":0.0181223,"about_ca_system_score_codex":0.000018980421,"about_ca_system_score_gemma":0.000009998088,"threshold_uncertainty_score":0.7555464},"labels":[],"label_agreement":null},{"id":"W2051267750","doi":"10.1128/aem.03207-12","title":"Anaerobic α-Amylase Production and Secretion with Fumarate as the Final Electron Acceptor in Saccharomyces cerevisiae","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fondation Chalmers; Novo Nordisk Fonden; Knut och Alice Wallenbergs Stiftelse; Chalmers Tekniska Högskola","keywords":"Anaerobic exercise; Saccharomyces cerevisiae; Yeast; Electron acceptor; Biochemistry; Amylase; Chemistry; Biology; Biophysics; Enzyme","score_opus":0.004352495588461228,"score_gpt":0.19169429783236078,"score_spread":0.18734180224389954,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051267750","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982011,0.00090582506,0.000005644519,0.00033986385,0.000017096421,0.00037056408,0.000007540469,0.000002846889,0.00014954612],"genre_scores_gemma":[0.9977983,0.0012748709,0.000071294686,0.00016484171,0.000061823725,0.000080510355,0.00017858634,0.0000105769905,0.0003591749],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99928176,0.000040498016,0.000095184194,0.0003327569,0.000029167324,0.00022064074],"domain_scores_gemma":[0.9997959,0.0000059902072,0.000031356685,0.00012309614,0.0000031396496,0.000040520954],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007167996,0.00012454117,0.00009211421,0.000024708934,0.00008224606,0.000019959898,0.00007003583,0.00008977539,0.00008512792],"category_scores_gemma":[0.0000026793405,0.000082268256,0.000011810116,0.000033587294,0.0002570965,0.0000044879575,0.00009763209,0.000108826556,0.000032632262],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009201329,0.000029914963,0.0034434395,0.0000076109454,0.000014277994,4.1601558e-7,0.00004441607,0.0000118512,0.9938553,0.000019634303,0.00015931518,0.002321792],"study_design_scores_gemma":[0.00068042695,0.00075602595,0.04487815,0.000007792231,0.000011343619,0.00016544925,0.00038953667,0.000011923033,0.9457726,0.00009767444,0.0069929953,0.00023608534],"about_ca_topic_score_codex":0.00003668716,"about_ca_topic_score_gemma":0.000034699802,"teacher_disagreement_score":0.04808272,"about_ca_system_score_codex":0.000012547515,"about_ca_system_score_gemma":0.000010703345,"threshold_uncertainty_score":0.3354802},"labels":[],"label_agreement":null},{"id":"W2051993036","doi":"10.1128/aem.00036-15","title":"Methicillin-Resistant Staphylococcus aureus in Commercial Swine Herds Is Associated with Disinfectant and Zinc Usage","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Disinfectant; Benzalkonium chloride; Herd; Staphylococcus aureus; Veterinary medicine; Microbiology; Persistence (discontinuity); Zinc; Methicillin-resistant Staphylococcus aureus; Antimicrobial; Biology; Antibiotic resistance; Meticillin; Medicine; Antibiotics; Chemistry; Bacteria","score_opus":0.014807697894888549,"score_gpt":0.2336920744569902,"score_spread":0.21888437656210163,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051993036","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966957,0.0008291107,0.00005797733,0.00053371274,0.000041340583,0.0005950549,0.0002794307,0.000030941395,0.00093672605],"genre_scores_gemma":[0.9975339,0.0002239991,0.00035368637,0.0014001657,0.000042117037,0.000025359102,0.0002485018,0.000040558287,0.00013167976],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99840873,0.00007458223,0.0003614768,0.0005576444,0.00010656596,0.0004909676],"domain_scores_gemma":[0.99927384,0.00011647398,0.00013171231,0.00024159173,0.000010124507,0.0002262547],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00033029256,0.00034516916,0.00065414124,0.00010794866,0.000094017916,0.000017684351,0.00008491324,0.00030189913,0.000050004408],"category_scores_gemma":[0.000024524245,0.00027488443,0.000042454776,0.00013682806,0.00089422165,0.000040091094,0.0001518514,0.0003968645,0.000014939237],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010196436,0.000298632,0.05542814,0.000024583711,0.000113777736,0.000102517704,0.0006509475,0.000003030509,0.9405919,0.00010647507,0.0005551376,0.0011052354],"study_design_scores_gemma":[0.027514381,0.0034154882,0.7996763,0.00039589117,0.0005855455,0.00014610741,0.0034382362,0.00005221335,0.123107485,0.0006920712,0.039065287,0.0019110043],"about_ca_topic_score_codex":0.00010567142,"about_ca_topic_score_gemma":0.0002771347,"teacher_disagreement_score":0.8174844,"about_ca_system_score_codex":0.00024609535,"about_ca_system_score_gemma":0.00005572606,"threshold_uncertainty_score":0.9999703},"labels":[],"label_agreement":null},{"id":"W2052481750","doi":"10.1128/aem.68.1.194-200.2002","title":"Mutagenic Analysis of a Conserved Region of Domain III in the Cry1Ac Toxin of <i>Bacillus thuringiensis</i>","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect Resistance and Genetics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Biotechnology Research Institute","funders":"","keywords":"Bacillus thuringiensis; Cry1Ac; Mutant; Toxin; Biology; Biochemistry; Amino acid; Aspartic acid; Mutagenesis; Arginine; Threonine; Bacillaceae; Bioassay; Site-directed mutagenesis; Bacillus subtilis; Serine; Bacteria; Genetics; Gene; Transgene; Genetically modified crops","score_opus":0.0056406598554845635,"score_gpt":0.16940695799059374,"score_spread":0.16376629813510918,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2052481750","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99791336,0.001444261,0.000056830202,0.000023804692,0.000009754689,0.00012159406,0.000055126453,7.858539e-7,0.00037446758],"genre_scores_gemma":[0.9986451,0.00091995863,0.00011813726,0.00014883697,0.00000784997,0.0000067314004,0.00011177391,0.0000050840326,0.000036513553],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993283,0.000048730275,0.00026962924,0.00018973206,0.000030927287,0.0001326465],"domain_scores_gemma":[0.9995536,0.000019278494,0.000169896,0.00024037468,0.0000032306764,0.000013602047],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009750253,0.00010050881,0.00025352478,0.000061244915,0.000019811896,0.0000011122888,0.000119879776,0.000120776036,0.000022276841],"category_scores_gemma":[0.000002315103,0.00007929084,0.00009114357,0.000108757195,0.00037243342,8.239916e-7,0.00006273732,0.000044844914,5.3415994e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007065008,0.000107874366,0.005053783,0.000013490839,0.00017023079,0.0000016775781,0.00042757398,0.000058070244,0.99368066,0.00006243218,0.00007076511,0.00028279447],"study_design_scores_gemma":[0.0011290805,0.00026914472,0.021350292,0.000005868834,0.00020139295,0.00002849756,0.0012211122,0.000015015262,0.97360396,0.00005509423,0.0019720918,0.00014845002],"about_ca_topic_score_codex":0.000019989286,"about_ca_topic_score_gemma":0.000074325944,"teacher_disagreement_score":0.0200767,"about_ca_system_score_codex":0.000005540895,"about_ca_system_score_gemma":0.000003533936,"threshold_uncertainty_score":0.32333866},"labels":[],"label_agreement":null},{"id":"W2052775713","doi":"10.1128/aem.00067-13","title":"Host Exopolysaccharide Quantity and Composition Impact Erwinia amylovora Bacteriophage Pathogenesis","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Brock University; Agriculture and Agri-Food Canada","funders":"","keywords":"Myoviridae; Podoviridae; Bacteriophage; Biology; Microbiology; Erwinia; Host (biology); Enterobacteriaceae; Bacteria; Escherichia coli; Biochemistry; Gene; Genetics","score_opus":0.003791963920921285,"score_gpt":0.18844508764104712,"score_spread":0.18465312372012582,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2052775713","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99874794,0.000095097406,0.00007387215,0.00008027618,0.00007826117,0.00033368784,0.00018179626,0.000029229492,0.00037983095],"genre_scores_gemma":[0.9982796,0.0002497214,0.0005984672,0.0004678496,0.00003168191,0.000037688922,0.00018828243,0.000021566742,0.00012515724],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989154,0.000036575395,0.00022092488,0.00045458513,0.00003168176,0.00034085882],"domain_scores_gemma":[0.9995584,0.000029383604,0.00008728371,0.00017972225,0.0000010219118,0.00014422294],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00005479149,0.0002512351,0.00023418022,0.000033053515,0.0002266757,0.000063507585,0.0001016868,0.00013747717,0.006567935],"category_scores_gemma":[8.908374e-7,0.00021898682,0.000057167264,0.00004575613,0.0004756131,0.00022243941,0.00031166905,0.00013857702,0.0011384991],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017003218,0.000083018065,0.012590026,0.00000394887,0.000020933048,0.0000026221733,0.000112309535,0.0000021188039,0.9836551,0.000008737538,0.0002936496,0.0032105623],"study_design_scores_gemma":[0.00040731387,0.0001073409,0.89720887,0.000004869128,0.000029488205,0.00026412442,0.00013756994,0.000015749654,0.09981276,0.000026989039,0.0016779223,0.00030698223],"about_ca_topic_score_codex":0.0010356449,"about_ca_topic_score_gemma":0.000037767742,"teacher_disagreement_score":0.8846189,"about_ca_system_score_codex":0.000106035666,"about_ca_system_score_gemma":0.0000023326602,"threshold_uncertainty_score":0.9996392},"labels":[],"label_agreement":null},{"id":"W2052941092","doi":"10.1128/aem.01421-13","title":"Evolution of Pseudomonas aeruginosa Virulence as a Result of Phage Predation","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Virulence; Biology; Microbiology; Pseudomonas aeruginosa; Phage therapy; Bacteriophage; Bacteria; Experimental evolution; Gene; Proteases; Population; Antibiotic resistance; Antibiotics; Genetics; Escherichia coli; Enzyme","score_opus":0.002937337365397881,"score_gpt":0.17724455255986005,"score_spread":0.17430721519446216,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2052941092","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99606764,0.00005701049,0.00016452432,0.00004114167,0.00005192213,0.00029337866,0.00007457539,0.000010221262,0.0032395688],"genre_scores_gemma":[0.9987667,0.00008874433,0.0006778637,0.00006783222,0.000011416499,0.000024700714,0.00007839143,0.000008077935,0.00027623613],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99924827,0.000024237368,0.00026877524,0.00025586362,0.000035510402,0.00016732348],"domain_scores_gemma":[0.9996126,0.000026708762,0.0001586969,0.00015720147,0.0000016968572,0.000043069347],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000054355503,0.00012096658,0.00016375471,0.000028442826,0.000054634813,0.000004930952,0.000106734784,0.00009568355,0.0030702346],"category_scores_gemma":[0.0000031483494,0.00011201946,0.000037703663,0.000052108746,0.000496137,0.00012836477,0.00017544208,0.00007969648,0.00046830802],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002063896,0.0001046755,0.0018732749,0.000006865144,0.000010137036,2.3735122e-7,0.00016642926,0.00002418854,0.99408454,0.00012552395,0.00029891322,0.003284567],"study_design_scores_gemma":[0.0005894111,0.00018005878,0.19061771,0.000012785408,0.000026873135,0.00007135072,0.0005211351,0.000036496436,0.8042163,0.00047437375,0.0030600582,0.00019342038],"about_ca_topic_score_codex":0.00095702364,"about_ca_topic_score_gemma":0.00001535763,"teacher_disagreement_score":0.18986821,"about_ca_system_score_codex":0.00008270504,"about_ca_system_score_gemma":0.0000034637999,"threshold_uncertainty_score":0.9978411},"labels":[],"label_agreement":null},{"id":"W2053669190","doi":"10.1128/aem.66.3.987-994.2000","title":"Multiplex PCR for Detection and Identification of Lactococcal Bacteriophages","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":132,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Novalait","keywords":"Biology; Genome; Bacteriophage; Lactococcus lactis; Gene; Genetics; Multiplex; Multiplex polymerase chain reaction; Lactococcus; Capsid; Computational biology; Microbiology; Polymerase chain reaction; Bacteria; Escherichia coli","score_opus":0.004214767100733834,"score_gpt":0.18948671702240502,"score_spread":0.18527194992167118,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2053669190","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99893045,0.000034640405,0.0002257235,0.000030735642,0.000040363117,0.00034653943,0.0001315652,0.00001096045,0.0002490286],"genre_scores_gemma":[0.9988631,0.0001533282,0.00029328698,0.00007790457,0.000018367962,0.000050799834,0.00008319961,0.000010378504,0.00044963855],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99936336,0.000013062576,0.00020243926,0.00026270506,0.0000146574375,0.00014379968],"domain_scores_gemma":[0.9997737,0.000028721248,0.000066094835,0.0000928562,5.900268e-7,0.000038031896],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000056589357,0.00010863552,0.00012695126,0.0000166443,0.000104403116,0.000010695263,0.000049841423,0.000086853026,0.0013130584],"category_scores_gemma":[0.0000013157093,0.0001038213,0.00002931891,0.000022369528,0.00030889284,0.00007198488,0.0000504962,0.000053920696,0.00006391178],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005279569,0.00004688314,0.00039406618,0.000006323826,0.0000086073405,1.3189566e-7,0.000111408815,0.0000068413456,0.9185401,0.000004249495,0.000021487682,0.08080706],"study_design_scores_gemma":[0.00071843894,0.00011378561,0.27376252,0.0000031698712,0.000029157492,0.00007166719,0.00012742197,0.00009057686,0.6936198,0.000059546466,0.03122629,0.00017762672],"about_ca_topic_score_codex":0.00005253291,"about_ca_topic_score_gemma":0.00002501346,"teacher_disagreement_score":0.27336845,"about_ca_system_score_codex":0.000030510659,"about_ca_system_score_gemma":7.744949e-7,"threshold_uncertainty_score":0.9995999},"labels":[],"label_agreement":null},{"id":"W2054285274","doi":"10.1128/aem.00055-11","title":"Effect of Soil Clay Content on RNA Isolation and on Detection and Quantification of Bacterial Gene Transcripts in Soil by Quantitative Reverse Transcription-PCR","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Moncton","funders":"","keywords":"RNA extraction; Reverse transcription polymerase chain reaction; Gene; RNA; Biology; Transcription (linguistics); Reverse transcriptase; Isolation (microbiology); Clay soil; Real-time polymerase chain reaction; Gene expression; Molecular biology; Soil water; Microbiology; Genetics; Ecology","score_opus":0.011906375790321175,"score_gpt":0.20741643015732897,"score_spread":0.1955100543670078,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2054285274","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969431,0.00021241771,0.0022775084,0.000014506217,0.00002253119,0.00033443392,0.0001326311,0.0000034271084,0.000059399576],"genre_scores_gemma":[0.998509,0.0007399452,0.00019766872,0.000050786497,0.0000062436698,0.000051889547,0.00042830146,0.000009054053,0.0000071375325],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993216,0.00007813696,0.00019795254,0.0002922965,0.000017266737,0.00009274922],"domain_scores_gemma":[0.9997579,0.000014700734,0.00009235339,0.00010811453,0.000003158282,0.000023784138],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001296785,0.00012567325,0.00016671575,0.000039249437,0.000034026245,0.0000017367225,0.00003592712,0.00018685222,0.00000552613],"category_scores_gemma":[0.0000028277102,0.00011279144,0.00002705241,0.00002019174,0.0002550298,0.000002856177,0.000014569129,0.000060389746,5.388584e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008783502,0.00009108691,0.00039135784,0.000017967031,0.000021524549,1.13521395e-7,0.00011105074,0.0000020895357,0.9947992,0.00015258843,0.000009183038,0.0035254704],"study_design_scores_gemma":[0.0008907469,0.0019518563,0.0040936447,0.000007668969,0.00002121866,0.0000059828026,0.000059229656,0.000017382072,0.9926583,0.000029266552,0.00016831377,0.000096395335],"about_ca_topic_score_codex":0.000055579076,"about_ca_topic_score_gemma":0.0000236908,"teacher_disagreement_score":0.0037022869,"about_ca_system_score_codex":0.000007616532,"about_ca_system_score_gemma":0.0000024098706,"threshold_uncertainty_score":0.45995012},"labels":[],"label_agreement":null},{"id":"W2054823868","doi":"10.1128/aem.02836-07","title":"Effects of Transgenic Hybrid Aspen Overexpressing Polyphenol Oxidase on Rhizosphere Diversity","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Forest Service; University of Victoria","funders":"","keywords":"Biology; Rhizosphere; Ascomycota; Population; Botany; 16S ribosomal RNA; Ribosomal RNA; 18S ribosomal RNA; Bacteroidetes; Microbiology; Genetics; Gene; Bacteria","score_opus":0.006868003085678512,"score_gpt":0.15275138910575578,"score_spread":0.14588338602007728,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2054823868","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99900883,0.00014962441,0.0000020925615,0.000025094434,0.000040704934,0.00014035129,0.00017615875,0.000012181541,0.00044494634],"genre_scores_gemma":[0.99930334,0.00022538251,0.000024354575,0.00017697172,0.000022836588,0.0000034487284,0.00015786669,9.4986405e-7,0.00008486935],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99944913,0.000033819277,0.000115581366,0.0002012356,0.000028315735,0.00017193875],"domain_scores_gemma":[0.9997303,0.00012401174,0.000059328617,0.00004188384,0.0000012851341,0.000043174423],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000025923082,0.00012561878,0.0001681839,0.0000065779955,0.00036378118,0.0000042807774,0.000120560806,0.00006566535,0.00030218044],"category_scores_gemma":[0.0000014517423,0.000059625127,0.000054464574,0.000025013107,0.00019806357,0.000037685393,0.00015317622,0.00011831109,0.00003760813],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007793755,0.00018432776,0.0014960855,0.000004589932,0.00002070336,0.0000050533113,0.000074880765,9.969046e-7,0.99208677,0.000012193227,0.00016763722,0.005868817],"study_design_scores_gemma":[0.0003787316,0.00022634707,0.12062866,0.000014181238,0.000015545696,0.0000948304,0.00013523728,0.0000012320659,0.8757555,0.00003027972,0.002566356,0.00015309843],"about_ca_topic_score_codex":0.00017439225,"about_ca_topic_score_gemma":0.000010830965,"teacher_disagreement_score":0.11913258,"about_ca_system_score_codex":0.00002045548,"about_ca_system_score_gemma":0.0000013913179,"threshold_uncertainty_score":0.3308664},"labels":[],"label_agreement":null},{"id":"W2055042385","doi":"10.1128/aem.02538-09","title":"7-Ketocholesterol Catabolism by <i>Rhodococcus jostii</i> RHA1","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Steroid Chemistry and Biochemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Methuselah Foundation","keywords":"Catabolism; Oxysterol; Rhodococcus; Biodegradation; Chemistry; Gene; Biology; Biochemistry; Microbiology; Cholesterol; Metabolism; Organic chemistry; Enzyme","score_opus":0.0015997818366821407,"score_gpt":0.16395014359847548,"score_spread":0.16235036176179335,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2055042385","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959126,0.0016402472,0.00006298897,0.00015664072,0.000044958633,0.00013279794,0.00025464868,0.00001580003,0.0017793016],"genre_scores_gemma":[0.9932457,0.00044568468,0.0001014365,0.0029067232,0.00016755266,0.000015179428,0.0024393415,0.000014676778,0.0006636772],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989105,0.000013793792,0.00018241908,0.0005326084,0.000033058157,0.00032760575],"domain_scores_gemma":[0.9995333,0.0000057056836,0.0000634683,0.00028471326,0.000002211325,0.000110582354],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000048423022,0.00025239383,0.00017833733,0.0000101969745,0.0000924184,0.000015809188,0.00017507865,0.00029864593,0.000029429531],"category_scores_gemma":[0.0000026616335,0.00024297918,0.000048796555,0.000021033238,0.0001802206,0.0000025225188,0.00011058199,0.00012522163,0.000022456628],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005945933,0.00008614285,0.00036270733,0.0000053838335,0.000020544001,0.0000015683362,0.000015624024,9.1173445e-7,0.9893852,0.000006216008,0.0073174248,0.002738854],"study_design_scores_gemma":[0.0007047205,0.000104862316,0.0008137418,0.0000027607562,0.0000148369045,0.0001285797,0.000062092,4.1776482e-7,0.8957299,0.000024426154,0.102148935,0.0002647482],"about_ca_topic_score_codex":0.0000015058515,"about_ca_topic_score_gemma":2.735285e-7,"teacher_disagreement_score":0.09483151,"about_ca_system_score_codex":0.000012664878,"about_ca_system_score_gemma":0.0000072551375,"threshold_uncertainty_score":0.9908403},"labels":[],"label_agreement":null},{"id":"W2055078937","doi":"10.1128/aem.71.10.6247-6253.2005","title":"Chaperone-Mediated Folding and Maturation of the Penicillin Acylase Precursor in the Cytoplasm of <i>Escherichia coli</i>","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; National Science Council","keywords":"Chaperone (clinical); Periplasmic space; Cytoplasm; Escherichia coli; GroEL; Foldase; Chaperonin; Biology; Release factor; Protein folding; Inducer; Biochemistry; Overproduction; Signal peptide; Cell biology; Inclusion bodies; Chemistry; Recombinant DNA; Gene; RNA; Ribosome","score_opus":0.0038531086357404916,"score_gpt":0.16844203608204594,"score_spread":0.16458892744630546,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2055078937","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991999,0.00021948933,0.000016598784,0.00013795459,0.0000514978,0.00018323722,0.00004292181,0.0000028311533,0.00014556163],"genre_scores_gemma":[0.99934787,0.000083988445,0.00017821912,0.0003209147,0.00002231725,0.000009256343,0.00002213858,0.0000036701588,0.000011629442],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995524,0.00004051975,0.00015359727,0.00012966261,0.00002873715,0.00009507275],"domain_scores_gemma":[0.99975973,0.000053524658,0.00008608265,0.00008971414,0.0000010282711,0.000009930416],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012245063,0.00007240566,0.00010819649,0.00001308976,0.000045841745,0.0000043129176,0.000076850825,0.00006675606,0.00004224947],"category_scores_gemma":[0.0000031630452,0.000041999618,0.000013028783,0.000032990785,0.00028049364,0.000033762128,0.000049915438,0.00006464043,0.0000041876046],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004417541,0.000020684893,0.0007555143,0.000007469742,0.0000022025868,6.435439e-8,0.0006641204,0.000023494,0.99791175,0.00023684677,0.000035619465,0.00029807608],"study_design_scores_gemma":[0.00052037736,0.000053878248,0.024566008,0.000005964403,0.000013801629,0.000014397054,0.0005213594,0.000029261784,0.9726196,0.000079144265,0.001509955,0.000066261695],"about_ca_topic_score_codex":0.000008101606,"about_ca_topic_score_gemma":0.000025918023,"teacher_disagreement_score":0.02529214,"about_ca_system_score_codex":0.000011015589,"about_ca_system_score_gemma":0.0000035622008,"threshold_uncertainty_score":0.17126948},"labels":[],"label_agreement":null},{"id":"W2055080737","doi":"10.1128/aem.69.5.3002-3004.2003","title":"Endotoxin Inactivation in Water by Using Medium-Pressure UV Lamps","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Odor and Emission Control Technologies","field":"Chemical Engineering","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"","keywords":"Irradiation; Chemistry; Chromatography; Environmental chemistry; Food science","score_opus":0.005021074856635552,"score_gpt":0.1749202263176226,"score_spread":0.16989915146098705,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2055080737","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99848586,0.00030572247,0.00038207634,0.000062596366,0.00003816899,0.00010775194,0.000015867998,0.00004343058,0.00055850815],"genre_scores_gemma":[0.99939704,0.000054439068,0.0002269273,0.00008490226,0.000009864882,0.0000142530125,0.00007391361,0.000012551336,0.00012609473],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99936855,0.000013050495,0.00014024081,0.00021539304,0.000021055164,0.00024170555],"domain_scores_gemma":[0.99983025,0.000024662786,0.000019494342,0.000097284435,5.5075986e-7,0.000027761824],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000059069815,0.00012573565,0.00015836208,0.000037884278,0.000036295536,0.0000044671588,0.00006316357,0.00019711016,0.00019553203],"category_scores_gemma":[0.0000068425625,0.00009656753,0.000016274305,0.00002272992,0.00008246205,0.000030342331,0.00005769843,0.00016382703,0.000014478088],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009918073,0.000029361656,0.000799001,0.0000065478594,0.000010684574,9.2470214e-7,0.000053678017,0.00009382844,0.9981971,0.00014339043,0.00008039586,0.0005751827],"study_design_scores_gemma":[0.00061271054,0.000010086125,0.00006616698,0.0000036840559,0.000007198071,0.000014865924,0.00020963846,0.00014563391,0.9775351,0.00016022948,0.021105306,0.00012937072],"about_ca_topic_score_codex":0.000011231696,"about_ca_topic_score_gemma":6.205277e-7,"teacher_disagreement_score":0.02102491,"about_ca_system_score_codex":0.00004085732,"about_ca_system_score_gemma":0.0000016657967,"threshold_uncertainty_score":0.39379096},"labels":[],"label_agreement":null},{"id":"W2056701864","doi":"10.1128/aem.06876-11","title":"Vanillin Catabolism in Rhodococcus jostii RHA1","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biochemical and biochemical processes","field":"Biochemistry, Genetics and Molecular Biology","cited_by":110,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Rhodococcus; Vanillin; Catabolism; Chemistry; Biochemistry; Microbiology; Biology; Enzyme","score_opus":0.006393782344185427,"score_gpt":0.1635045574775129,"score_spread":0.1571107751333275,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2056701864","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962936,0.0015249364,0.000041461542,0.000028478464,0.00004174672,0.00012769585,0.000056870264,0.000008275837,0.0018769093],"genre_scores_gemma":[0.99755293,0.0006391278,0.0004954988,0.00063515967,0.00006887539,0.000023481367,0.00047603782,0.000014473005,0.00009442294],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990766,0.000013937943,0.00017879774,0.0004325758,0.000020794783,0.00027729827],"domain_scores_gemma":[0.9997227,0.0000063866296,0.00003992211,0.00015477328,0.0000019814784,0.00007420885],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000053993648,0.00017638718,0.00015856685,0.000023643564,0.00003410637,0.000003723495,0.00014116375,0.0002661763,0.000086198015],"category_scores_gemma":[0.0000053250037,0.00015263482,0.000031712334,0.00003503237,0.00031108756,0.0000020137559,0.00021177327,0.00011517726,0.000034633667],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007547508,0.000110861525,0.002984704,0.000009931478,0.000011607149,0.0000018292468,0.000054181673,1.3946433e-7,0.9946644,0.00007680257,0.0002751775,0.0017348985],"study_design_scores_gemma":[0.0005224582,0.00007668139,0.004806127,0.0000033697427,0.000007693342,0.00003488982,0.00009727097,4.9230846e-7,0.97999895,0.0003142107,0.013911377,0.00022651287],"about_ca_topic_score_codex":0.000022140322,"about_ca_topic_score_gemma":0.000008134632,"teacher_disagreement_score":0.014665474,"about_ca_system_score_codex":0.000009318921,"about_ca_system_score_gemma":0.0000075497196,"threshold_uncertainty_score":0.6224267},"labels":[],"label_agreement":null},{"id":"W2057192639","doi":"10.1128/aem.69.3.1564-1572.2003","title":"Prokaryotic Homologs of the Eukaryotic 3-Hydroxyanthranilate 3,4-Dioxygenase and 2-Amino-3-Carboxymuconate-6-Semialdehyde Decarboxylase in the 2-Nitrobenzoate Degradation Pathway of<i>Pseudomonas fluorescens</i>Strain KU-7","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biochemical and biochemical processes","field":"Biochemistry, Genetics and Molecular Biology","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"Kansai University","keywords":"Pseudomonas fluorescens; Strain (injury); Dioxygenase; Pseudomonas; Pseudomonadales; Bacteria; Pseudomonadaceae; Degradation (telecommunications); Biochemistry; Microbiology; Chemistry; Enzyme; Biology; Genetics","score_opus":0.003880954419632142,"score_gpt":0.16748093488551216,"score_spread":0.16359998046588,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057192639","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99729633,0.0018427925,0.000017740987,0.00009187968,0.000035064324,0.0003668211,0.00014026179,0.000003377954,0.00020571882],"genre_scores_gemma":[0.9987557,0.00047393184,0.00016338046,0.0003178625,0.000020659396,0.000024128269,0.00020270432,0.000014837202,0.000026810778],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99879295,0.00011422818,0.0003476642,0.00040974852,0.00006321236,0.00027219867],"domain_scores_gemma":[0.99948627,0.00004791215,0.00014886052,0.00026266224,0.0000064390965,0.00004786717],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021822393,0.00023403142,0.00025424943,0.000027040303,0.000064402426,0.0000062587474,0.00021976692,0.00026450923,0.000009043807],"category_scores_gemma":[0.0000305986,0.00014692443,0.00006771252,0.00009077574,0.00088856387,0.000004077053,0.00014302414,0.00017980207,9.2925427e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006368807,0.00015302368,0.003609735,0.00006344983,0.000027618888,0.0000016161052,0.00006788832,0.000004249563,0.99524707,0.00022907909,0.000025541314,0.0005070655],"study_design_scores_gemma":[0.000829527,0.00012722792,0.0050844033,0.000016425574,0.000028547682,0.00010252492,0.0002038961,0.0000047460003,0.99257463,0.00046300064,0.00038577977,0.0001793073],"about_ca_topic_score_codex":0.000014297342,"about_ca_topic_score_gemma":0.000008273203,"teacher_disagreement_score":0.0026724308,"about_ca_system_score_codex":0.000011313913,"about_ca_system_score_gemma":0.000025859286,"threshold_uncertainty_score":0.5991404},"labels":[],"label_agreement":null},{"id":"W2057314722","doi":"10.1128/aem.00182-13","title":"Identification of Potentially Diarrheagenic Atypical Enteropathogenic Escherichia coli Strains Present in Canadian Food Animals at Slaughter and in Retail Meats","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia; Cegep de Saint Hyacinthe; University of Guelph; Université de Montréal; Public Health Agency of Canada; McGill University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Enteropathogenic Escherichia coli; Virulence; Microbiology; Escherichia coli; Biology; Diarrhea; Enterobacteriaceae; Gene; Genetics; Medicine","score_opus":0.005849579464022844,"score_gpt":0.19444357846032564,"score_spread":0.1885939989963028,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057314722","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99747926,0.0017118212,0.0000085283955,0.00012480395,0.000018390056,0.0004865976,0.000092947455,0.0000017897925,0.0000758739],"genre_scores_gemma":[0.9987419,0.0007942969,0.000071641574,0.00007214577,0.000015787611,0.000103206665,0.00011260296,0.000012871942,0.00007550302],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988693,0.00007645102,0.00027751463,0.00037823134,0.000042670046,0.00035585582],"domain_scores_gemma":[0.9996786,0.000010197997,0.000058381185,0.00015449981,0.000005589079,0.000092737726],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017801854,0.00014222393,0.00018850033,0.000062257925,0.00004714607,0.000009369877,0.000099373596,0.00016193937,0.000051899136],"category_scores_gemma":[0.000011835725,0.00013915561,0.000027926942,0.000041064544,0.0003072005,0.0000043498994,0.0002531151,0.0000949456,0.0000088787],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055007837,0.00004574873,0.056899864,0.00001529626,0.000032995245,0.0000014845714,0.000085497435,0.000003834976,0.94223887,0.000015553343,0.000037254882,0.00056857493],"study_design_scores_gemma":[0.00086791604,0.0002149406,0.8122242,0.00000591907,0.000010206577,0.00001260429,0.00018914818,0.000032985543,0.18480635,0.000051302628,0.0014017689,0.00018266341],"about_ca_topic_score_codex":0.001281156,"about_ca_topic_score_gemma":0.026566919,"teacher_disagreement_score":0.7574325,"about_ca_system_score_codex":0.00008127414,"about_ca_system_score_gemma":0.00002942051,"threshold_uncertainty_score":0.9911957},"labels":[],"label_agreement":null},{"id":"W2057745867","doi":"10.1128/aem.01229-14","title":"Host Responses to the Pathogen Mycobacterium avium subsp. paratuberculosis and Beneficial Microbes Exhibit Host Sex Specificity","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Chenomx (Canada)","funders":"Texas Tech University Health Sciences Center; Texas Tech University","keywords":"Host (biology); Pathogen; Paratuberculosis; Microbiology; Biology; Mycobacterium; Bacteria; Virology; Genetics","score_opus":0.007936836926899176,"score_gpt":0.21314772765193304,"score_spread":0.20521089072503387,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057745867","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995323,0.00051911647,0.000019868952,0.002201457,0.00008979116,0.00063388335,0.000621624,0.000026850857,0.00056440907],"genre_scores_gemma":[0.9951165,0.0011261053,0.00019782309,0.0025157153,0.0003367606,0.00007920098,0.00034781804,0.00003065383,0.00024947213],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99840176,0.00012054986,0.0002628099,0.0005980603,0.0000798942,0.00053693936],"domain_scores_gemma":[0.9990461,0.00024108222,0.000054123208,0.00036103118,0.00000611171,0.00029159078],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003117542,0.00029341842,0.00040650452,0.00008391974,0.0002552856,0.00005002348,0.0001285225,0.00019291336,0.00025673048],"category_scores_gemma":[0.00002898149,0.00020993277,0.00006372237,0.000073030504,0.000376952,0.000031912015,0.00032364018,0.00023329702,0.00021961177],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046226045,0.00012304202,0.066100895,0.000028541352,0.000042017433,0.000007647434,0.00026124573,1.5531556e-7,0.9298922,0.000067373025,0.0014885257,0.0015261037],"study_design_scores_gemma":[0.00110376,0.00064877066,0.6091842,0.000023033634,0.00009225669,0.00028373403,0.00049757207,0.0000031819684,0.24181484,0.000017200304,0.14599223,0.0003392423],"about_ca_topic_score_codex":0.00006849824,"about_ca_topic_score_gemma":0.00003463217,"teacher_disagreement_score":0.68807733,"about_ca_system_score_codex":0.000054765515,"about_ca_system_score_gemma":0.000014866881,"threshold_uncertainty_score":0.85608095},"labels":[],"label_agreement":null},{"id":"W2057746244","doi":"10.1128/aem.03903-14","title":"<i>In Vivo</i> Selection To Identify Bacterial Strains with Enhanced Ecological Performance in Synbiotic Applications","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Probiotic; Prebiotic; Biology; Bifidobacterium; Microbiology; Synbiotics; Gastrointestinal tract; Population; Human gastrointestinal tract; Strain (injury); In vivo; Gut flora; Feces; Bacteria; 16S ribosomal RNA; Food science; Lactobacillus; Biotechnology; Biochemistry; Genetics; Medicine","score_opus":0.005630940390199114,"score_gpt":0.2206115998567476,"score_spread":0.21498065946654848,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057746244","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998743,0.000029604666,0.00022096962,0.00006756802,0.000037829483,0.00046715332,0.000034668075,0.0000051458,0.00039403397],"genre_scores_gemma":[0.99850917,0.000086282336,0.00043466839,0.00051911216,0.000069055226,0.000104876024,0.0001861709,0.0000111824575,0.000079456055],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991301,0.00002617832,0.000167515,0.00038062688,0.000020002119,0.00027563347],"domain_scores_gemma":[0.9997662,0.0000039130086,0.00003670974,0.00010194876,0.0000027413785,0.000088500514],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009637535,0.00013582727,0.00015097171,0.00004909268,0.000040148705,0.0000079209385,0.00007867379,0.00016453136,0.000034863388],"category_scores_gemma":[0.0000012511028,0.00012272426,0.00001199524,0.00006684138,0.000102761034,0.000004349446,0.00009833992,0.000094150164,0.000029490915],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012312614,0.0001262277,0.003761125,0.000008042187,0.000005452544,6.5633407e-7,0.00006644755,0.00008102648,0.99527955,0.000021319267,0.00012074867,0.00040629838],"study_design_scores_gemma":[0.00261123,0.0011341904,0.11272505,0.00001009726,0.0000105161225,0.000121972116,0.00043641822,0.0000050993103,0.8574077,0.000025955625,0.025103582,0.00040818765],"about_ca_topic_score_codex":0.0000111069,"about_ca_topic_score_gemma":0.00020887515,"teacher_disagreement_score":0.13787183,"about_ca_system_score_codex":0.00006583983,"about_ca_system_score_gemma":0.000030335035,"threshold_uncertainty_score":0.500455},"labels":[],"label_agreement":null},{"id":"W2059026141","doi":"10.1128/aem.02261-13","title":"High-Efficiency Thermal Asymmetric Interlaced PCR (hiTAIL-PCR) for Determination of a Highly Degenerated Prophage WO Genome in a Wolbachia Strain Infecting a Fig Wasp Species","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Ontario Museum","funders":"Chinese Academy of Sciences; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China","keywords":"Prophage; Strain (injury); Wolbachia; Genome; Biology; Genetics; Polymerase chain reaction; Gene; Escherichia coli; Bacteriophage; Anatomy","score_opus":0.007868884512015352,"score_gpt":0.16913912825722757,"score_spread":0.16127024374521223,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059026141","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99879926,0.0000733522,0.000009344815,0.00006659223,0.000058846344,0.00069328974,0.00020886894,0.0000140976745,0.00007636019],"genre_scores_gemma":[0.99900705,0.000017663555,0.0002749235,0.00009692381,0.00007444393,0.00011155181,0.00037878973,0.0000022007941,0.00003646364],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99894893,0.000054318778,0.0003401455,0.0003169947,0.000035587225,0.0003040457],"domain_scores_gemma":[0.9996489,0.00010836303,0.00015634857,0.000041426094,0.0000074852983,0.00003745193],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016134551,0.00017885759,0.00026753475,0.000046305693,0.0001124383,0.00003508772,0.00013622532,0.00014609836,0.00024989882],"category_scores_gemma":[0.000009248564,0.00008326706,0.000050257597,0.00015788167,0.0001760565,0.00007799113,0.00008366036,0.00008257786,0.00001209686],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027379545,0.0001289867,0.0024748822,0.000010344327,0.000006905594,4.1269746e-7,0.00017534902,0.000003847683,0.9735444,0.00008186505,0.0000025303677,0.023543105],"study_design_scores_gemma":[0.0007217249,0.0010599535,0.47507125,0.000014916741,0.0000135554,0.000009517242,0.00077886524,0.000050652056,0.52158254,0.00013858729,0.0002379,0.000320547],"about_ca_topic_score_codex":0.00020747726,"about_ca_topic_score_gemma":0.00008236648,"teacher_disagreement_score":0.47259638,"about_ca_system_score_codex":0.00004053254,"about_ca_system_score_gemma":0.0000034940927,"threshold_uncertainty_score":0.3395532},"labels":[],"label_agreement":null},{"id":"W2059820562","doi":"10.1128/aem.70.11.6800-6808.2004","title":"Ultrastructural Alterations of <i>Erwinia carotovora</i> subsp. <i>atroseptica</i> Caused by Treatment with Aluminum Chloride and Sodium Metabisulfite","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Aluminum toxicity and tolerance in plants and animals","field":"Agricultural and Biological Sciences","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Natural Resources Canada; Canadian Forest Service; Université Laval","funders":"","keywords":"Sodium metabisulfite; Cell wall; Bacteria; Erwinia; Chemistry; Chloride; Membrane permeability; Biochemistry; Calcein; Membrane; Biophysics; Cell membrane; Biology; Food science","score_opus":0.004887904223067934,"score_gpt":0.15976449453037198,"score_spread":0.15487659030730405,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059820562","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982231,0.00030585265,0.000005680485,0.00022493051,0.000022013304,0.00024742316,0.000850996,0.000013346436,0.00010661101],"genre_scores_gemma":[0.9985131,0.00049135747,0.00008136836,0.00024668645,0.000050501614,0.000025304606,0.0005375507,0.0000019722725,0.00005215494],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992001,0.00001411692,0.00018555117,0.00031915135,0.000039294828,0.00024180327],"domain_scores_gemma":[0.9997537,0.00004165547,0.000079027035,0.00004364992,0.0000024728126,0.00007946518],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003405417,0.00020319734,0.0002795731,0.0000068702707,0.00017923939,0.000020267105,0.000063448475,0.00009004509,0.000057505807],"category_scores_gemma":[4.1179993e-7,0.00008300282,0.000034355533,0.000039287443,0.00040792098,0.000053501004,0.000028541344,0.00006411664,0.0000044546787],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006906428,0.00008550616,0.0033279036,0.000003289253,0.000038013433,0.0000019603447,0.00014397541,0.0000040218542,0.9939683,0.00008998679,0.00001591132,0.0022520877],"study_design_scores_gemma":[0.0015850491,0.0013437831,0.027332796,0.000012497458,0.00008082589,0.00013992444,0.00070330774,0.0000024607943,0.9574215,0.00016630575,0.010846498,0.00036508057],"about_ca_topic_score_codex":0.0001451962,"about_ca_topic_score_gemma":0.0001601699,"teacher_disagreement_score":0.036546808,"about_ca_system_score_codex":0.000020453983,"about_ca_system_score_gemma":0.0000038843577,"threshold_uncertainty_score":0.3384757},"labels":[],"label_agreement":null},{"id":"W2060942011","doi":"10.1128/aem.68.4.1616-1623.2002","title":"Influence of Medium Buffering Capacity on Inhibition of<i>Saccharomyces cerevisiae</i>Growth by Acetic and Lactic Acids","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":200,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Acetic acid; Lactic acid; Yeast; Intracellular pH; Saccharomyces cerevisiae; Chemistry; Intracellular; Extracellular; Biochemistry; Succinic acid; Growth medium; Chromatography; Bacteria; Biology","score_opus":0.005586678080523122,"score_gpt":0.17691215073345518,"score_spread":0.17132547265293205,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060942011","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99828494,0.001221303,0.000007984488,0.00006495597,0.0000094145735,0.00010640215,0.0001044062,0.0000021114606,0.00019851181],"genre_scores_gemma":[0.997423,0.002269843,0.000077808705,0.00009154917,0.000017221695,0.000008910509,0.00007131403,0.000008975519,0.00003136965],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99937624,0.000027440232,0.00014804042,0.0002499082,0.000041313513,0.00015704574],"domain_scores_gemma":[0.99975914,0.000016578593,0.000058830297,0.0001100907,0.0000044927347,0.000050856335],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000057519155,0.00011805837,0.00015141735,0.00002552212,0.000037173857,0.000003446228,0.00005990275,0.00012389082,0.000024973391],"category_scores_gemma":[0.0000065444756,0.00010615132,0.000020819505,0.000024344248,0.00040320694,0.000002555542,0.0001225216,0.00008059486,0.000004992321],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003562405,0.00006596188,0.004869435,0.00005217429,0.000020121102,2.985087e-7,0.000052767347,0.00000991069,0.9943452,0.000028468543,0.0000837026,0.00043633906],"study_design_scores_gemma":[0.00041807315,0.0003163975,0.006955621,0.000011816927,0.000009278677,0.000020136473,0.000047352267,0.000004564975,0.9914502,0.000034444758,0.00062837446,0.00010377077],"about_ca_topic_score_codex":0.000009179822,"about_ca_topic_score_gemma":8.801725e-7,"teacher_disagreement_score":0.0028950276,"about_ca_system_score_codex":0.00000737326,"about_ca_system_score_gemma":0.0000025305053,"threshold_uncertainty_score":0.4328725},"labels":[],"label_agreement":null},{"id":"W2060982379","doi":"10.1128/aem.02538-08","title":"Activation and Transfer of the Chromosomal Phage Resistance Mechanism AbiV in <i>Lactococcus lactis</i>","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Lactococcus lactis; Biology; Mutant; Microbiology; Lactococcus; Bacteriophage; Strain (injury); Genetics; Bacteria; Molecular biology; Gene; Escherichia coli; Lactic acid","score_opus":0.0024583623141574105,"score_gpt":0.16101522432946805,"score_spread":0.15855686201531063,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060982379","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99772936,0.00002995273,0.00007120448,0.0003017259,0.000033142318,0.0002695563,0.000034637967,0.0000059172353,0.001524475],"genre_scores_gemma":[0.99905306,0.00008118347,0.000103606966,0.0005517157,0.000009228778,0.000009894204,0.000014680056,0.000006290148,0.00017032964],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99937576,0.000025461131,0.00016419003,0.00024375165,0.00002572769,0.00016508106],"domain_scores_gemma":[0.9997944,0.000018600387,0.000040598083,0.00011799587,3.4058795e-7,0.000028049244],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000047693935,0.00012031624,0.00013589016,0.000015778474,0.00007783616,0.000006603983,0.000084962485,0.00008922727,0.00029093106],"category_scores_gemma":[9.351826e-7,0.000094371484,0.000026059819,0.000050855728,0.0002335451,0.00007873927,0.000063933905,0.00012886217,0.000010244008],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034199897,0.000074638236,0.0005168369,0.000003050077,0.0000034882828,5.8171514e-7,0.0002270349,0.000003135244,0.996986,0.0002702259,0.000050303777,0.0018305453],"study_design_scores_gemma":[0.00060873805,0.000051741317,0.24376123,0.000012253215,0.000009785747,0.00002460999,0.00011774983,0.0000025210888,0.75007576,0.0005122724,0.0046906746,0.00013268697],"about_ca_topic_score_codex":0.000038192848,"about_ca_topic_score_gemma":0.000089902234,"teacher_disagreement_score":0.24691021,"about_ca_system_score_codex":0.000059687303,"about_ca_system_score_gemma":0.0000018867702,"threshold_uncertainty_score":0.38483575},"labels":[],"label_agreement":null},{"id":"W2061589412","doi":"10.1128/aem.04049-13","title":"Low-Molecular-Weight Metabolites Secreted by Paenibacillus larvae as Potential Virulence Factors of American Foulbrood","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect and Pesticide Research","field":"Agricultural and Biological Sciences","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Dalhousie University","keywords":"American foulbrood; Biology; Virulence; Microbiology; Larva; Paenibacillus; Brood; Virulence factor; Bacteria; Spore; Gene; Zoology; Botany; Genetics; 16S ribosomal RNA","score_opus":0.0029278319295893787,"score_gpt":0.17137007083583247,"score_spread":0.1684422389062431,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061589412","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99879,0.00025883212,0.000026757525,0.00006853402,0.000032880587,0.00014151861,0.00027293872,0.000016070546,0.00039241556],"genre_scores_gemma":[0.99871486,0.00019472903,0.000039412385,0.00020486281,0.00004096537,0.000008829215,0.0007535039,0.0000022012891,0.00004065344],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99895453,0.00009362699,0.00018768522,0.0003328003,0.00007782497,0.00035349917],"domain_scores_gemma":[0.9996205,0.000116981624,0.00009269482,0.000059876133,0.0000042989627,0.00010564142],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010153331,0.00018226128,0.00028302104,0.000013307202,0.000112859794,0.000014060816,0.00018482654,0.000108723725,0.0006308916],"category_scores_gemma":[0.000007863695,0.00008106797,0.00006742481,0.00008598478,0.0005735185,0.000026060261,0.0001299048,0.00012644312,0.00003957543],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034284563,0.00006695162,0.0032541605,0.0000045497013,0.000023324812,9.974137e-7,0.00003067077,0.0000011531336,0.9817523,0.0001893708,0.00003330435,0.014608953],"study_design_scores_gemma":[0.00024094348,0.00043643324,0.024865415,0.0000034575883,0.000023211882,0.000014660141,0.0002365571,0.000012367723,0.9665104,0.00035049906,0.007071377,0.00023465109],"about_ca_topic_score_codex":0.00024266634,"about_ca_topic_score_gemma":0.000012863287,"teacher_disagreement_score":0.021611255,"about_ca_system_score_codex":0.000011997308,"about_ca_system_score_gemma":0.0000026942328,"threshold_uncertainty_score":0.69078207},"labels":[],"label_agreement":null},{"id":"W2062130348","doi":"10.1128/aem.02948-08","title":"Sulfur Isotope Enrichment during Maintenance Metabolism in the Thermophilic Sulfate-Reducing Bacterium <i>Desulfotomaculum putei</i>","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Paleontology and Stratigraphy of Fossils","field":"Earth and Planetary Sciences","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Sulfate; Thermophile; Sulfide; Sulfur; Enrichment culture; Isotope fractionation; Sulfate-reducing bacteria; Chemostat; Chemistry; Desulfovibrio; Fractionation; Environmental chemistry; Delta; Bacteria; Biology; Chromatography; Biochemistry","score_opus":0.004333300508968109,"score_gpt":0.1651645543585503,"score_spread":0.1608312538495822,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2062130348","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98850226,0.0029498097,0.0000035930107,0.00048217148,0.00009357649,0.00027632742,0.00007154124,0.0000165307,0.0076041687],"genre_scores_gemma":[0.9986782,0.0005015894,0.00009165127,0.00056486897,0.00005822551,0.0000060093344,0.00007815807,0.0000013322344,0.000019961552],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99877435,0.000091234244,0.0002378417,0.00038987023,0.000046809386,0.000459882],"domain_scores_gemma":[0.9996417,0.000049436483,0.000070530725,0.00018209152,0.0000010180577,0.000055199496],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022046384,0.00021019662,0.0002389175,0.000054816494,0.00020818482,0.00002543927,0.00024471438,0.00012381622,0.0001030975],"category_scores_gemma":[0.0000016497012,0.0001422941,0.00005045028,0.000080624406,0.00027223342,0.000071995484,0.0000055014066,0.00022795159,0.000024258072],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000111672125,0.00008420065,0.047070585,0.000007010402,0.000025418814,0.000042186704,0.0009942207,0.000038319977,0.9017745,0.00022935195,0.000055136417,0.049567346],"study_design_scores_gemma":[0.0005720059,0.00006638559,0.9932441,0.000004673384,0.0000119062815,0.00019143695,0.00042571695,0.000010837853,0.004197708,0.0003440576,0.0007497065,0.00018143593],"about_ca_topic_score_codex":0.00011383768,"about_ca_topic_score_gemma":0.00010630068,"teacher_disagreement_score":0.94617355,"about_ca_system_score_codex":0.000004866217,"about_ca_system_score_gemma":0.0000059916492,"threshold_uncertainty_score":0.5802585},"labels":[],"label_agreement":null},{"id":"W2062809849","doi":"10.1128/aem.02036-12","title":"Next-Generation Sequencing of Microbial Communities in the Athabasca River and Its Tributaries in Relation to Oil Sands Mining Activities","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Petroleum Processing and Analysis","field":"Chemistry","cited_by":213,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Environment and Climate Change Canada; National Research Council Canada","funders":"","keywords":"Tailings; Oil sands; Tributary; Environmental science; Context (archaeology); Microbial population biology; Sediment; Ecology; Geology; Asphalt; Biology; Geography; Chemistry; Bacteria","score_opus":0.0230682196234595,"score_gpt":0.20377454335841813,"score_spread":0.18070632373495862,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2062809849","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986432,0.00085163215,0.0000062929585,0.00003578373,0.000009526216,0.000008328321,0.000037853722,0.0000037080868,0.0004036449],"genre_scores_gemma":[0.99925005,0.00018814694,0.00010996588,0.00007897274,0.000034042037,0.000011341375,0.00024418917,0.0000052732235,0.00007801748],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995343,0.000034317436,0.00015517998,0.00009560266,0.000022371769,0.00015819284],"domain_scores_gemma":[0.9997896,0.0000719199,0.000055049797,0.000065396474,8.704154e-7,0.00001715307],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016365778,0.000093992116,0.00015145223,0.00005539071,0.00008753935,0.000012762354,0.00005476438,0.00008695163,0.000026890755],"category_scores_gemma":[0.0000031820555,0.0000787737,0.00001448491,0.000038082664,0.00013526638,0.00009360541,0.00005585551,0.00010692371,8.794228e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018174518,0.000027214186,0.023539364,0.00002354817,0.000009189621,1.8462927e-7,0.014683981,0.000036074092,0.9587125,0.000026607051,0.0000044916096,0.0029186686],"study_design_scores_gemma":[0.0017301169,0.000053320684,0.020094538,0.00012700909,0.00009032218,0.00008707337,0.092359684,0.00068207365,0.8817071,0.000021145888,0.002549617,0.00049805205],"about_ca_topic_score_codex":0.00014949162,"about_ca_topic_score_gemma":0.0001308597,"teacher_disagreement_score":0.07767571,"about_ca_system_score_codex":0.00005472364,"about_ca_system_score_gemma":0.00000521697,"threshold_uncertainty_score":0.32122982},"labels":[],"label_agreement":null},{"id":"W2062990918","doi":"10.1128/aem.00363-09","title":"Long-Term Survival of <i>Salmonella enterica</i> Serovar Typhimurium Reveals an Infectious State That Is Underrepresented on Laboratory Media Containing Bile Salts","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of British Columbia","funders":"","keywords":"Infectivity; Salmonella enterica; Salmonella; Serotype; Microbiology; Biology; Enterobacteriaceae; Virology; Bacteria; Escherichia coli; Biochemistry; Gene; Virus","score_opus":0.01035352902402203,"score_gpt":0.23560798196366048,"score_spread":0.22525445293963844,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2062990918","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99864966,0.00035615228,0.00003147957,0.00006296378,0.000079823585,0.0002362119,0.00035291727,0.0000132151,0.00021757519],"genre_scores_gemma":[0.9973461,0.0011809762,0.0000325195,0.00062611274,0.00006504787,0.000012530984,0.0006855016,0.00002042019,0.000030769814],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99880785,0.000100779886,0.00020994853,0.0004849532,0.000062424464,0.00033405918],"domain_scores_gemma":[0.99944395,0.00003100575,0.00011490107,0.00030370196,0.000008572311,0.00009789125],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001320632,0.00022547621,0.00029788452,0.000046096822,0.000077287834,0.000011381211,0.00013538782,0.00014130288,0.000026702812],"category_scores_gemma":[0.00000765508,0.00020700989,0.000043831435,0.000042163312,0.00032221002,0.000005823221,0.00017514468,0.0001138127,0.000010008219],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032747127,0.00017340573,0.049641173,0.00001148247,0.00009485851,0.0000054788425,0.00015850055,0.000003855652,0.9482839,0.0000056082745,0.000118447104,0.0011757816],"study_design_scores_gemma":[0.0013255074,0.0012578563,0.2776368,0.000011643026,0.000020369132,0.000017260669,0.00021852221,8.3459844e-7,0.7187075,0.00004889685,0.0004989273,0.0002558478],"about_ca_topic_score_codex":0.000008431619,"about_ca_topic_score_gemma":0.000013218534,"teacher_disagreement_score":0.22957641,"about_ca_system_score_codex":0.000026568929,"about_ca_system_score_gemma":0.000014132705,"threshold_uncertainty_score":0.8441618},"labels":[],"label_agreement":null},{"id":"W2063049561","doi":"10.1128/aem.71.3.1328-1335.2005","title":"Rhizobial 16S rRNA and <i>dnaK</i> Genes: Mosaicism and the Uncertain Phylogenetic Placement of <i>Rhizobium galegae</i>","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"National Institute of Allergy and Infectious Diseases; Pennsylvania State University; University of Pennsylvania","keywords":"Biology; Mesorhizobium; Agrobacterium; Rhizobium leguminosarum; Phylogenetic tree; Rhizobiaceae; Rhizobium; 16S ribosomal RNA; Rhizobia; Botany; Genetics; Gene; Bacteria; Nitrogen fixation; Symbiosis","score_opus":0.004251766408302014,"score_gpt":0.1573809179303508,"score_spread":0.15312915152204878,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063049561","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956872,0.0025782606,7.11613e-7,0.0009983515,0.000031328473,0.00032642076,0.00013344236,0.000012228548,0.00023205318],"genre_scores_gemma":[0.9975646,0.0008021682,0.00015598546,0.0011748057,0.0001121494,0.00002539496,0.00009102452,0.0000024139404,0.00007145193],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989995,0.00006708491,0.00024318598,0.0003668714,0.000051036026,0.00027236252],"domain_scores_gemma":[0.9996106,0.0001508051,0.000100311394,0.00006892028,0.0000023372356,0.00006699652],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015876639,0.00020056435,0.00026865586,0.000008363676,0.00017153526,0.000017212129,0.0001311463,0.0001243753,0.000093367285],"category_scores_gemma":[0.000002201309,0.000080056154,0.000041188647,0.000044601155,0.00082947675,0.000025503417,0.00022017767,0.00009878641,0.000010878964],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010166639,0.00005456118,0.003877039,0.0000055189557,0.000030438485,4.20107e-7,0.00013626876,0.000001076443,0.9829289,0.0002459623,0.00016578531,0.012452412],"study_design_scores_gemma":[0.0051360074,0.00060545705,0.031608157,0.00002111272,0.00019660508,0.00031898476,0.0018729038,0.000038474023,0.91357005,0.00061433046,0.04519719,0.00082073105],"about_ca_topic_score_codex":0.00007718247,"about_ca_topic_score_gemma":0.000056495446,"teacher_disagreement_score":0.0693588,"about_ca_system_score_codex":0.000016362703,"about_ca_system_score_gemma":0.0000024947765,"threshold_uncertainty_score":0.32645953},"labels":[],"label_agreement":null},{"id":"W2063129600","doi":"10.1128/aem.66.12.5155-5160.2000","title":"Coliform Bacteria and Nitrogen Fixation in Pulp and Paper Mill Effluent Treatment Systems","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University","funders":"","keywords":"Clarifier; Effluent; Pulp and paper industry; Nitrogen fixation; Biology; Activated sludge; Paper mill; Pulp (tooth); Bacteria; Microbiology; Wastewater; Environmental science; Environmental engineering","score_opus":0.0038970934483765316,"score_gpt":0.16162913718899838,"score_spread":0.15773204374062186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063129600","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981638,0.0005387899,4.090287e-7,0.00004073225,0.00002207196,0.0004340188,0.00006089119,0.000010585825,0.00072869274],"genre_scores_gemma":[0.9977775,0.0011840964,0.00025216135,0.00011043425,0.000017152275,0.00006364321,0.00018968782,0.000013108143,0.0003921735],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99907523,0.000033267617,0.00018699758,0.00039520653,0.000033145086,0.00027617483],"domain_scores_gemma":[0.9997531,0.000018116345,0.00003510707,0.00010578848,2.0845258e-7,0.00008763429],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00005619928,0.00021844779,0.00021814331,0.000024698304,0.000095781514,0.000022031838,0.000041609957,0.000109422246,0.0009190432],"category_scores_gemma":[2.2094268e-7,0.00017081489,0.000018843464,0.000027950526,0.0002597657,0.00007434079,0.000071290575,0.00004509523,0.00016521176],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000094880015,0.00012627523,0.08244071,0.000005684591,0.000029926136,0.000008211204,0.00040979515,0.000020043397,0.9024975,0.000014183812,0.00002861821,0.014324222],"study_design_scores_gemma":[0.012768924,0.0016047767,0.70253766,0.000037494523,0.00023937006,0.0013645825,0.0015776819,0.00030323732,0.15538932,0.0007496211,0.12182803,0.0015992837],"about_ca_topic_score_codex":0.00038204208,"about_ca_topic_score_gemma":0.0000692824,"teacher_disagreement_score":0.7471081,"about_ca_system_score_codex":0.00015632971,"about_ca_system_score_gemma":0.0000016025949,"threshold_uncertainty_score":0.9999943},"labels":[{"model":"gemma","categories":[],"domain":null,"study_design":"observational","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"low"},{"model":"gpt","categories":[],"domain":null,"study_design":"bench_or_experimental","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"high"}],"label_agreement":"split"},{"id":"W2063272342","doi":"10.1128/aem.03387-14","title":"Identification and Characterization of Carboxyl Esterases of Gill Chamber-Associated Microbiota in the Deep-Sea Shrimp Rimicaris exoculata by Using Functional Metagenomics","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme Catalysis and Immobilization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of General Medical Sciences","keywords":"Esterase; Lipase; Metagenomics; Biology; Enzyme; Shrimp; Context (archaeology); Substrate (aquarium); Biochemistry; Chemistry; Ecology; Paleontology","score_opus":0.010169585915471215,"score_gpt":0.1912536176473717,"score_spread":0.1810840317319005,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063272342","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986225,0.0005624587,0.00034120274,0.000013284757,0.000026108319,0.00015699794,0.0002681294,0.0000011802539,0.000008187329],"genre_scores_gemma":[0.9929797,0.00028056823,0.000024840245,0.000070936505,0.000012383332,0.0000068051313,0.0066041173,0.0000084759595,0.0000121538405],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99937403,0.000053572625,0.0002418323,0.00021310314,0.00002772106,0.00008973564],"domain_scores_gemma":[0.99965924,0.000010437937,0.00017240441,0.00013045187,0.000008036977,0.000019408331],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001648502,0.000097115524,0.00014378247,0.000030472163,0.000028599148,0.0000062630897,0.000050990107,0.00011776767,0.0000028660663],"category_scores_gemma":[0.0000075101166,0.000083502084,0.0000227981,0.00004351786,0.00016482521,0.0000060860143,0.00006760157,0.000036236896,3.315966e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003086837,0.000087872664,0.009692811,0.0000070169444,0.000034093533,7.6662204e-8,0.00012300606,0.000028582775,0.9898253,0.000006880925,0.000025903257,0.00013757487],"study_design_scores_gemma":[0.0006103713,0.00006691897,0.029825337,0.0000035792361,0.000054049247,0.000017737524,0.00032029272,0.00015498252,0.96837574,0.0000064086403,0.0004575241,0.00010704138],"about_ca_topic_score_codex":0.000023480003,"about_ca_topic_score_gemma":0.000012151701,"teacher_disagreement_score":0.021449555,"about_ca_system_score_codex":0.00001784663,"about_ca_system_score_gemma":0.000008836591,"threshold_uncertainty_score":0.34051162},"labels":[],"label_agreement":null},{"id":"W2063324944","doi":"10.1128/aem.01117-09","title":"Degradation of a Mixture of Hydrocarbons, Gasoline, and Diesel Oil Additives by <i>Rhodococcus aetherivorans</i> and <i>Rhodococcus wratislaviensis</i>","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":105,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"Association Nationale de la Recherche et de la Technologie","keywords":"Chemistry; Ethylbenzene; Toluene; Benzene; Biodegradation; Xylene; Organic chemistry; Cometabolism; Hydrocarbon; Octane; Rhodococcus; Alcohol; Environmental chemistry; Bioremediation; Bacteria","score_opus":0.00272008605121809,"score_gpt":0.17052818672443243,"score_spread":0.16780810067321433,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063324944","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973235,0.00090195035,0.00003582966,0.00017548374,0.000022343958,0.0001629444,0.0005157024,0.000010549048,0.00085165864],"genre_scores_gemma":[0.9954737,0.0028241868,0.0007209743,0.0005732503,0.0000093129975,0.000003996575,0.00027248118,0.000009214128,0.00011288926],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989794,0.000051826122,0.00030979238,0.00038243766,0.000059183414,0.00021734479],"domain_scores_gemma":[0.99955976,0.000052826952,0.00017913546,0.00012475002,0.0000011971958,0.000082326755],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011461976,0.00021797967,0.00031774834,0.000026681395,0.000067101006,0.0000071975805,0.00008124653,0.00016090216,0.00013574795],"category_scores_gemma":[0.000004847958,0.00018546561,0.00002838899,0.000061258565,0.0007839159,0.0000636099,0.00009464651,0.00009754503,0.0000063857774],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052298266,0.00009451336,0.006246886,0.0000110703695,0.000013006141,5.556081e-7,0.00023617127,7.2051677e-7,0.9672953,0.000021284366,0.00085689133,0.025171343],"study_design_scores_gemma":[0.001873911,0.00044223876,0.042589985,0.000028879836,0.000071208255,0.000060141465,0.0005161238,0.000029322598,0.9421043,0.00018522158,0.01159499,0.0005036926],"about_ca_topic_score_codex":0.00004088612,"about_ca_topic_score_gemma":0.000031130327,"teacher_disagreement_score":0.036343098,"about_ca_system_score_codex":0.000020337064,"about_ca_system_score_gemma":0.0000032359897,"threshold_uncertainty_score":0.7563068},"labels":[],"label_agreement":null},{"id":"W2063577275","doi":"10.1128/aem.03696-12","title":"Effects of Temperature and pH on Reduction of Bacteria in a Point-of-Use Drinking Water Treatment Product for Emergency Relief","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fecal contamination and water quality","field":"Environmental Science","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"","keywords":"Disinfectant; Bacteria; Escherichia coli; Chemistry; Water treatment; Log reduction; Pulp and paper industry; Food science; Microbiology; Environmental science; Biology; Environmental engineering; Biochemistry; Organic chemistry","score_opus":0.005342952381464875,"score_gpt":0.18775814912664587,"score_spread":0.182415196745181,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063577275","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991511,0.000031991174,0.0000037584898,0.000071210015,0.00004691075,0.00064929394,0.000012373892,0.0000026873959,0.000030671632],"genre_scores_gemma":[0.99940634,0.00011375167,0.0002074938,0.000021430524,0.0000074125774,0.00006219536,0.00006313829,0.000006369842,0.00011188],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99936455,0.00003574042,0.00022004101,0.00023457782,0.000022901764,0.00012220898],"domain_scores_gemma":[0.99980116,0.000022546772,0.00006549648,0.000087413646,0.0000010415281,0.000022370232],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007015545,0.000106908665,0.00018404478,0.00002722257,0.000022843322,0.0000021636038,0.000033720193,0.00006303101,0.00013412857],"category_scores_gemma":[0.0000024324706,0.000073017734,0.000023643015,0.000019801615,0.00016979866,0.00006876536,0.000050692524,0.00003430368,0.0000056319777],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005974519,0.00020392466,0.0064269206,0.000039951756,0.000010012365,1.051017e-7,0.0007394815,0.0000045946554,0.9895875,0.00004664232,0.000026799979,0.0028543181],"study_design_scores_gemma":[0.0006367186,0.00032078565,0.117896244,0.0000087706685,0.000009167578,0.0000028566628,0.00007244242,0.0000019782265,0.8806223,0.0001381036,0.0002200892,0.00007050269],"about_ca_topic_score_codex":0.00014867332,"about_ca_topic_score_gemma":0.000006102637,"teacher_disagreement_score":0.11146932,"about_ca_system_score_codex":0.00004083821,"about_ca_system_score_gemma":7.441604e-7,"threshold_uncertainty_score":0.2977577},"labels":[],"label_agreement":null},{"id":"W2063644798","doi":"10.1128/aem.70.7.4040-4047.2004","title":"Initial Reaction(s) in Biotransformation of CL-20 Is Catalyzed by Salicylate 1-Monooxygenase from <i>Pseudomonas</i> sp. Strain ATCC 29352","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"U.S. Environmental Protection Agency","keywords":"Chemistry; Strain (injury); Metabolite; Monooxygenase; Electrospray ionization; Nitrite; Stereochemistry; Pseudomonas stutzeri; Biotransformation; Enzyme; Chromatography; Mass spectrometry; Medicinal chemistry; Bacteria; Organic chemistry; Biochemistry; Biology","score_opus":0.00460606851338337,"score_gpt":0.1861198665269278,"score_spread":0.18151379801354442,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063644798","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99577314,0.00005559602,0.000052103416,0.00027116266,0.000059930895,0.0003030576,0.0029266435,0.000015671765,0.0005427041],"genre_scores_gemma":[0.99599546,0.0002821766,0.00026121206,0.00074775546,0.000018794035,0.0000072366292,0.0026577062,0.000013619014,0.000016019923],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987993,0.00002965494,0.00042614702,0.0003959071,0.000073405696,0.0002755347],"domain_scores_gemma":[0.9995979,0.000018962535,0.00014463354,0.00015177597,8.0971193e-7,0.00008590002],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000112130045,0.00021583572,0.00024739892,0.00004153869,0.000060465896,0.000008771785,0.00013061438,0.00022392714,0.0008419056],"category_scores_gemma":[0.0000013851625,0.00020563776,0.0000456149,0.000095137526,0.00040010267,0.00012599675,0.00008547265,0.00014223922,0.0002839157],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007435388,0.0001618107,0.0018924167,0.0000049045266,0.000012777747,0.0000018242486,0.0007516826,0.000015952452,0.99498916,0.000009037463,0.00027611942,0.0018099761],"study_design_scores_gemma":[0.0020975848,0.000043352902,0.004984515,0.0000070797128,0.000013228421,0.000010953207,0.00032401728,0.0000043679706,0.9873487,0.00017209041,0.004747316,0.0002468489],"about_ca_topic_score_codex":0.0006029138,"about_ca_topic_score_gemma":0.00024933217,"teacher_disagreement_score":0.007640498,"about_ca_system_score_codex":0.00016941718,"about_ca_system_score_gemma":0.000007863785,"threshold_uncertainty_score":0.92182755},"labels":[],"label_agreement":null},{"id":"W2063668179","doi":"10.1128/aem.69.6.3569-3572.2003","title":"Density-Dependent Sorting of Physiologically Different Cells of <i>Vibrio parahaemolyticus</i>","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Vibrio parahaemolyticus; Percoll; Biology; Cell sorting; Buoyant density; Exponential growth; Bacteria; Microbiology; Viable but nonculturable; Vibrio; Cell biology; Cell; Centrifugation; Genetics; Biochemistry; DNA; Physics","score_opus":0.0050429771444427006,"score_gpt":0.18728248074415924,"score_spread":0.18223950359971652,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063668179","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990073,0.00031105182,0.00010727595,0.0000073090205,0.00003383784,0.0001748239,0.00005479144,0.000002878062,0.0003007368],"genre_scores_gemma":[0.9987728,0.0006612375,0.00028015915,0.00006361215,0.00001734999,0.000010793254,0.00009723338,0.00001032997,0.00008651117],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99910295,0.000058772617,0.0002505553,0.00030933917,0.000039364724,0.00023900023],"domain_scores_gemma":[0.99961674,0.000021349075,0.00012908228,0.00018359478,0.0000047701574,0.0000444403],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008555956,0.00015880339,0.00029137163,0.000018928076,0.000045384717,0.000002605648,0.00009377763,0.00012129996,0.000025034686],"category_scores_gemma":[0.000010000869,0.00012581534,0.0000586251,0.000015927602,0.00042042127,0.0000012811498,0.00023390088,0.00006780867,0.000003739544],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006420924,0.00012537187,0.004092299,0.00002397328,0.00007512345,7.8343004e-7,0.000030551815,0.000007872527,0.99511516,0.00014869493,0.00003768375,0.00027827005],"study_design_scores_gemma":[0.0005200376,0.00026517987,0.009266036,0.0000040787454,0.000015479593,0.000012809172,0.00015838465,6.215463e-7,0.9890036,0.0000831606,0.0005492054,0.000121405144],"about_ca_topic_score_codex":0.0000040566256,"about_ca_topic_score_gemma":0.0000033057618,"teacher_disagreement_score":0.0061115646,"about_ca_system_score_codex":0.0000099436775,"about_ca_system_score_gemma":0.000008019835,"threshold_uncertainty_score":0.5130601},"labels":[],"label_agreement":null},{"id":"W2063754943","doi":"10.1128/aem.69.8.4396-4402.2003","title":"<i>Rhizobium leguminosarum</i> Biovar viciae 1-Aminocyclopropane-1-Carboxylate Deaminase Promotes Nodulation of Pea Plants","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":275,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Wilfrid Laurier University; University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Rhizobium leguminosarum; Pisum; Biology; Sativum; Ethylene; Rhizobiaceae; Mutant; Rhizobium; Rhizobia; Nitrogen fixation; Microbiology; Biochemistry; Gene; Botany; Symbiosis; Bacteria; Genetics","score_opus":0.00537285993411022,"score_gpt":0.15436794950531635,"score_spread":0.14899508957120614,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063754943","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983697,0.00029670494,9.753848e-7,0.000064360866,0.000066611385,0.0002807739,0.00022760817,0.000028146087,0.00066511915],"genre_scores_gemma":[0.99902546,0.000052590865,0.00018779094,0.00015799866,0.00004173116,0.000014918549,0.0004625635,0.0000029744244,0.000053974894],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99886507,0.0000659746,0.000274112,0.00041156297,0.000055732373,0.0003275237],"domain_scores_gemma":[0.9996372,0.00007287391,0.00013765391,0.00007901621,0.000003399862,0.000069867776],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012889302,0.00021836515,0.00026420475,0.000017772949,0.00012318685,0.0000101818305,0.00012459474,0.00018704306,0.00017484809],"category_scores_gemma":[0.0000051548423,0.00010695948,0.00005792264,0.00007152145,0.00025789885,0.000043209817,0.0000748097,0.00010244934,0.000056218705],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022637203,0.00011976945,0.019620847,0.0000070855845,0.000024314282,0.000002299795,0.00006654061,1.6248636e-7,0.9757404,0.00012561404,0.000031197567,0.0042391396],"study_design_scores_gemma":[0.0003244833,0.0001741206,0.06561168,0.000008310913,0.000024255594,0.00008120866,0.00023863485,0.0000015721469,0.93057024,0.00021730154,0.0024924832,0.00025571752],"about_ca_topic_score_codex":0.000058615555,"about_ca_topic_score_gemma":0.000022284117,"teacher_disagreement_score":0.045990836,"about_ca_system_score_codex":0.000027906906,"about_ca_system_score_gemma":0.0000034233374,"threshold_uncertainty_score":0.43616807},"labels":[],"label_agreement":null},{"id":"W2063801313","doi":"10.1128/aem.01667-06","title":"Biodiversity of Bacterial Ecosystems in Traditional Egyptian Domiati Cheese","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":149,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institut National de la Recherche Agronomique; Agence Universitaire de la Francophonie","keywords":"Temperature gradient gel electrophoresis; Biology; Lactococcus; Bacteria; Pediococcus; Lactobacillus; Lactococcus lactis; Leuconostoc mesenteroides; Leuconostoc; Microbiology; Food science; 16S ribosomal RNA; Lactic acid; Genetics","score_opus":0.006631360950684604,"score_gpt":0.12976376192831313,"score_spread":0.12313240097762852,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063801313","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99855113,0.000047778783,1.9868017e-7,0.00007587852,0.00005020668,0.00011263897,0.0007527188,0.000005314617,0.00040413858],"genre_scores_gemma":[0.9981592,0.000026755808,0.00002451695,0.000039225954,0.000056653713,0.000003060734,0.0016805998,3.398012e-7,0.000009618334],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995074,0.000017175302,0.00014756735,0.00016949356,0.000020378367,0.00013793],"domain_scores_gemma":[0.99988574,0.000017776421,0.000051762898,0.000021404525,8.056719e-7,0.000022517494],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000054875025,0.0000823335,0.00013554098,0.0000103392795,0.00004634818,0.00000513083,0.00006815236,0.00009899004,0.00035432255],"category_scores_gemma":[3.237183e-7,0.00003982281,0.0000274984,0.00003490445,0.000120410994,0.000018299153,0.000048997746,0.00005022515,0.000014090107],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031187115,0.0001310899,0.0072737113,0.0000026611958,0.0000048245274,8.519643e-7,0.000014164083,0.0000033548863,0.99132144,0.00021037842,0.00015632536,0.0008499997],"study_design_scores_gemma":[0.0017021355,0.00038405394,0.89946747,0.000010430283,0.00001697146,0.000036991605,0.00042982845,0.000020668242,0.08045629,0.0006784877,0.016418273,0.00037840276],"about_ca_topic_score_codex":0.000119281125,"about_ca_topic_score_gemma":0.00021680024,"teacher_disagreement_score":0.9108652,"about_ca_system_score_codex":0.00002188218,"about_ca_system_score_gemma":0.00000125356,"threshold_uncertainty_score":0.38795832},"labels":[],"label_agreement":null},{"id":"W2065540788","doi":"10.1128/aem.03864-13","title":"Taxonomic Identification of Commensal Bacteria Associated with the Mucosa and Digesta throughout the Gastrointestinal Tracts of Preweaned Calves","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Animal health and immunology","field":"Veterinary","cited_by":242,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Livestock and Meat Agency","keywords":"Biology; Firmicutes; Prevotella; Bacteroidetes; Microbiology; Cecum; Microbiome; Ileum; Bacteroides; Rumen; Ruminococcus; Intestinal mucosa; Eubacterium; Bacteria; Lactobacillus; Feces; 16S ribosomal RNA; Food science; Ecology; Internal medicine","score_opus":0.013595474832429058,"score_gpt":0.23069785042618002,"score_spread":0.21710237559375095,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2065540788","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991345,0.00007080943,0.00011062947,0.00020983368,0.000016689619,0.0002498021,0.00009435063,0.000006456204,0.000106951215],"genre_scores_gemma":[0.9995629,0.000030774634,0.00007257334,0.00015346636,0.000011583287,0.000015946278,0.00012897646,0.0000090354415,0.00001472247],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99929875,0.00011217127,0.00023234624,0.00016583534,0.00001873214,0.00017214008],"domain_scores_gemma":[0.9993463,0.00023678609,0.00025240044,0.00014076842,0.0000029122689,0.00002081],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019021925,0.00011082362,0.00019201636,0.00001302398,0.000110198176,0.0000047772064,0.00010007633,0.000057538087,0.000018949822],"category_scores_gemma":[0.000008231769,0.00006398652,0.000016853292,0.000016948774,0.0009009866,0.000023558146,0.00007822551,0.000115136696,0.000004202913],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005655943,0.00006949578,0.009385084,0.000012601533,0.000022437396,3.0378422e-7,0.0002688942,3.8933413e-7,0.9887201,0.00038428346,0.000043508036,0.0005272783],"study_design_scores_gemma":[0.0009726604,0.0022467528,0.9789947,0.000017266202,0.000049262406,0.0002900685,0.0011960628,0.00003339137,0.014989444,0.000056986704,0.0010374053,0.00011598559],"about_ca_topic_score_codex":0.000024977764,"about_ca_topic_score_gemma":0.0000084386165,"teacher_disagreement_score":0.9737307,"about_ca_system_score_codex":0.000017177588,"about_ca_system_score_gemma":0.0000063024445,"threshold_uncertainty_score":0.33197227},"labels":[],"label_agreement":null},{"id":"W2066267477","doi":"10.1128/aem.05891-11","title":"Effect of Sodium Bisulfite Injection on the Microbial Community Composition in a Brackish-Water-Transporting Pipeline","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Water Treatment and Disinfection","field":"Environmental Science","cited_by":83,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Canada; Baker Hughes","keywords":"Deltaproteobacteria; Sodium bisulfite; Environmental chemistry; Sulfate-reducing bacteria; Chemistry; Iron sulfide; Biology; Bacteria; Sulfate; Sulfur; 16S ribosomal RNA; Organic chemistry","score_opus":0.0074919779509529045,"score_gpt":0.17796612348915375,"score_spread":0.17047414553820084,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066267477","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99739814,0.00000567389,0.000026200738,0.000020841375,0.000046727662,0.00032675336,0.000015818086,0.000014055184,0.0021457807],"genre_scores_gemma":[0.99958223,0.0000092333685,0.000022291637,0.00010584865,0.000010079714,0.000021332798,0.0002156211,0.000009579889,0.000023786246],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99916935,0.00019875047,0.00021785135,0.00018682481,0.00003098994,0.00019623605],"domain_scores_gemma":[0.9997011,0.0000616903,0.00006902663,0.0001430009,3.9444896e-7,0.000024785202],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003504848,0.00015828609,0.00016668305,0.00003603439,0.00016646445,0.0000047120984,0.00008428955,0.00009270165,0.00041081957],"category_scores_gemma":[9.995555e-7,0.00009721778,0.000039005874,0.000044682933,0.00034115024,0.00004863773,0.00008975929,0.0001850805,0.000105944455],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002977746,0.00025216382,0.09557191,0.000007832946,0.0000073854517,0.000001055128,0.0012485565,0.000027035687,0.9010627,0.000010177043,0.000022396216,0.0014909804],"study_design_scores_gemma":[0.00092182565,0.0006320609,0.08104816,0.000009301168,0.000023759412,0.000023930112,0.00013621934,0.000009539006,0.9169176,0.000098073986,0.00006630698,0.00011320808],"about_ca_topic_score_codex":0.00076211046,"about_ca_topic_score_gemma":0.00012431115,"teacher_disagreement_score":0.015854884,"about_ca_system_score_codex":0.00007329552,"about_ca_system_score_gemma":6.1869736e-7,"threshold_uncertainty_score":0.44981864},"labels":[],"label_agreement":null},{"id":"W2066273154","doi":"10.1128/aem.02490-10","title":"Transcriptomic Responses of the Softwood-Degrading White-Rot Fungus Phanerochaete carnosa during Growth on Coniferous and Deciduous Wood","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":117,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"University of Toronto; Government of Ontario","keywords":"Softwood; Phanerochaete; Deciduous; Fungus; White rot; Botany; Biology; Hardwood; Woody plant; Transcriptome; Lignin; Gene expression","score_opus":0.006605081797127727,"score_gpt":0.15954048223178746,"score_spread":0.15293540043465972,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066273154","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975852,0.0010931512,0.000012877639,0.000008951265,0.000052032392,0.00017869075,0.0008081361,0.000006256525,0.0002547031],"genre_scores_gemma":[0.9989845,0.00056447025,0.00006734988,0.00015759544,0.000027438988,0.000015025915,0.000100268364,0.000016220956,0.00006708806],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992293,0.00004485932,0.00015269588,0.0003305156,0.000027815733,0.00021480667],"domain_scores_gemma":[0.9996983,0.000013598476,0.000063815285,0.00016169378,0.0000021693224,0.000060419457],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004510544,0.00017819538,0.00017000658,0.000027370617,0.00011259397,0.0000043430337,0.000109592846,0.00012930098,0.000013584529],"category_scores_gemma":[0.000004027279,0.00013585255,0.000055072356,0.00001964801,0.00031199722,0.0000021703108,0.00010088626,0.00007446069,0.0000021975593],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046489394,0.000068937894,0.02429567,0.000018213686,0.00005100953,0.0000044028698,0.00014802974,6.9093727e-7,0.9745775,0.00006297831,0.000014962337,0.00029273378],"study_design_scores_gemma":[0.00082106644,0.00025620195,0.15239692,0.000011925617,0.000050713348,0.0002159064,0.00021195003,6.1985185e-7,0.8456311,0.000037696453,0.0001753206,0.00019054477],"about_ca_topic_score_codex":0.000008153121,"about_ca_topic_score_gemma":0.000007018035,"teacher_disagreement_score":0.12894633,"about_ca_system_score_codex":0.000008451854,"about_ca_system_score_gemma":0.00000789095,"threshold_uncertainty_score":0.5539906},"labels":[],"label_agreement":null},{"id":"W2066512112","doi":"10.1128/aem.06278-11","title":"Daphnia magna, a Host for Evaluation of Bacterial Virulence","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; University of Bath; Université Laval","keywords":"Daphnia magna; Virulence; Pseudomonas aeruginosa; Biology; Photorhabdus; Daphnia; Microbiology; Host (biology); Bacteria; Zoology; Ecology; Genetics; Gene; Chemistry; Toxicity","score_opus":0.018401524647503092,"score_gpt":0.2321670470922061,"score_spread":0.213765522444703,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066512112","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99844915,0.0002965211,0.00009005656,0.000007766055,0.000056921137,0.00039196285,0.00023642527,0.0000023517011,0.00046882482],"genre_scores_gemma":[0.9983166,0.00022808058,0.0007138932,0.00003542872,0.000053960845,0.000107875494,0.00050308445,0.000009656632,0.00003143806],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994006,0.000032000415,0.0001252181,0.00024698803,0.000031789088,0.00016337328],"domain_scores_gemma":[0.9997691,0.00000748187,0.000054222546,0.00013286428,0.0000083591885,0.000028008617],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018993104,0.00009856089,0.00011861061,0.000022893879,0.000044663317,0.0000024241497,0.00008088114,0.00009127057,0.00013688188],"category_scores_gemma":[0.000010651982,0.00009032024,0.00003015045,0.000012704148,0.00028231659,0.0000019232098,0.00014890706,0.00002576927,0.00000579712],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002236095,0.000051628853,0.00060264225,0.000009895412,0.00004500864,7.2412035e-8,0.000094938245,2.0143145e-7,0.996658,0.000046485384,0.00012535509,0.0021421465],"study_design_scores_gemma":[0.001497505,0.00038264657,0.017027035,0.00000260939,0.000038997932,0.000007649844,0.00016680107,0.0000048659,0.9757606,0.00008670212,0.004902895,0.000121689685],"about_ca_topic_score_codex":0.0000049084597,"about_ca_topic_score_gemma":0.0000043570262,"teacher_disagreement_score":0.020897415,"about_ca_system_score_codex":0.00001102505,"about_ca_system_score_gemma":0.000013457119,"threshold_uncertainty_score":0.36831525},"labels":[],"label_agreement":null},{"id":"W2066632213","doi":"10.1128/aem.02876-05","title":"<i>Helicobacter anseris</i> sp. nov. and <i>Helicobacter brantae</i> sp. nov., Isolated from Feces of Resident Canada Geese in the Greater Boston Area","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Center for Research Resources; National Institute of Dental and Craniofacial Research; National Institute of Allergy and Infectious Diseases; National Cancer Institute; National Institutes of Health","keywords":"Biology; Feces; Helicobacter; 16S ribosomal RNA; Flock; Microbiology; Veterinary medicine; Zoology; Helicobacter pylori; Bacteria; Ecology; Genetics","score_opus":0.004893723420624815,"score_gpt":0.17141837805551344,"score_spread":0.16652465463488864,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066632213","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960975,0.00083397265,0.0000063933103,0.0016898318,0.00009563575,0.0005294727,0.00047949632,0.000016690034,0.00025099108],"genre_scores_gemma":[0.9942975,0.00053565035,0.000056133053,0.0041166595,0.00007948197,0.000037718786,0.00077307434,0.000032384243,0.00007138857],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9980539,0.00009313881,0.00059121347,0.0006136581,0.000099160505,0.00054893864],"domain_scores_gemma":[0.9992888,0.000102005295,0.0001676985,0.00035034955,0.000008432627,0.00008271872],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00013325749,0.0004133084,0.00066037587,0.00008448265,0.00010665416,0.000014762408,0.00015024492,0.00026484954,0.000102784885],"category_scores_gemma":[0.0000036760068,0.00029710482,0.000053161468,0.00009121632,0.00064697606,0.000053364252,0.00018934932,0.00040632256,0.000012521338],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039852882,0.000090043424,0.45381355,0.000015470496,0.00012301355,0.00005081212,0.00034781027,0.00000124791,0.5433748,0.000002870929,0.0016322158,0.00014964402],"study_design_scores_gemma":[0.0036738815,0.0002692564,0.95895636,0.000052850726,0.00021017555,0.0004127301,0.00073869777,0.0000043533987,0.025993228,0.000020410966,0.009390754,0.00027727385],"about_ca_topic_score_codex":0.088387966,"about_ca_topic_score_gemma":0.08156209,"teacher_disagreement_score":0.51738155,"about_ca_system_score_codex":0.000112037764,"about_ca_system_score_gemma":0.000030530926,"threshold_uncertainty_score":0.9999481},"labels":[],"label_agreement":null},{"id":"W2067201037","doi":"10.1128/aem.69.6.3299-3307.2003","title":"Consensus-Degenerate Hybrid Oligonucleotide Primers for Amplification of Priming Glycosyltransferase Genes of the Exopolysaccharide Locus in Strains of the <i>Lactobacillus casei</i> Group","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Lactobacillus casei; Gene; Genetics; Primer (cosmetics); Lactobacillus rhamnosus; Microbiology; Genome; Lactobacillus; Bacteria","score_opus":0.00927693562729002,"score_gpt":0.16772823136777032,"score_spread":0.1584512957404803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2067201037","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985347,0.00023008151,0.00002191425,0.0000853822,0.000048978196,0.00046443663,0.00056939456,0.0000022886518,0.000042846033],"genre_scores_gemma":[0.99955297,0.00012486459,0.0001666904,0.000084551735,0.0000074339846,0.000010270065,0.000044853474,0.0000016147154,0.0000067715946],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992624,0.00005239774,0.00029291105,0.00019328152,0.000032764994,0.000166273],"domain_scores_gemma":[0.99967986,0.00006400816,0.0001497399,0.00008011578,0.000004078506,0.000022170629],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013747081,0.00011206113,0.00018529264,0.000008257714,0.00007605351,0.0000026880016,0.00014079985,0.000065935266,0.000012019733],"category_scores_gemma":[0.000004843074,0.000043973498,0.00007289851,0.00006490094,0.00040888082,0.000008932445,0.000044139717,0.00006310371,2.1966697e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025313846,0.0001013455,0.0026794628,0.000012996404,0.000015947886,1.0176223e-7,0.000054761585,0.000023069999,0.99329376,0.0011116954,0.000004352155,0.0026771992],"study_design_scores_gemma":[0.00034982877,0.00009011212,0.015855415,0.000009912359,0.00002194345,0.000013450707,0.0004019661,0.0000060114203,0.98249626,0.00019584624,0.00047556718,0.00008370445],"about_ca_topic_score_codex":0.00007360975,"about_ca_topic_score_gemma":0.000099853896,"teacher_disagreement_score":0.013175952,"about_ca_system_score_codex":0.00001803781,"about_ca_system_score_gemma":0.0000063780963,"threshold_uncertainty_score":0.17931871},"labels":[],"label_agreement":null},{"id":"W2067862657","doi":"10.1128/aem.05999-11","title":"Distribution of Clostridium botulinum Type E Strains in Nunavik, Northern Quebec, Canada","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Botulinum Toxin and Related Neurological Disorders","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Makivik Corporation; Health Canada","funders":"Canadian Food Inspection Agency","keywords":"Bay; Shore; Clostridium botulinum; Geography; Biology; Fishery; Archaeology; Microbiology","score_opus":0.005235309969178301,"score_gpt":0.18106067655952549,"score_spread":0.1758253665903472,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2067862657","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984738,0.0005466032,0.0000036682882,0.00033601205,0.0000868694,0.00016504916,0.000074734366,0.0000062659055,0.00030695743],"genre_scores_gemma":[0.9984981,0.00028583023,0.000009299114,0.00040049656,0.000022801676,0.0000033383951,0.00069407054,0.00000761328,0.00007848681],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99938154,0.000017774502,0.00017717046,0.00014600916,0.000029753957,0.00024774414],"domain_scores_gemma":[0.9997734,0.000019022174,0.000044133805,0.00008296466,0.0000015447664,0.00007895539],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000038307615,0.00010818329,0.00019718747,0.000014203984,0.000021496566,8.6453514e-7,0.000032775297,0.00016233053,0.00009708068],"category_scores_gemma":[0.0000035483238,0.00008577046,0.000021639135,0.000049648846,0.0001759527,0.000012217139,0.000036252542,0.00018729581,0.0000106888065],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013449247,0.00030290862,0.14137812,0.000018826111,0.000031249263,0.0000073990104,0.00007906541,0.000012973518,0.8556817,0.00009759503,0.00032363468,0.0019320133],"study_design_scores_gemma":[0.0019507383,0.00019119792,0.95487887,0.0000114407185,0.00005455507,0.00008152557,0.0004850007,0.000007679557,0.029439695,0.000043458782,0.012646021,0.00020984856],"about_ca_topic_score_codex":0.035856903,"about_ca_topic_score_gemma":0.0844041,"teacher_disagreement_score":0.826242,"about_ca_system_score_codex":0.00009007524,"about_ca_system_score_gemma":0.00003900831,"threshold_uncertainty_score":0.9705634},"labels":[],"label_agreement":null},{"id":"W2068366757","doi":"10.1128/aem.70.7.4211-4215.2004","title":"Host-Adapted<i>Cryptosporidium</i>spp. in Canada Geese (<i>Branta canadensis</i>)","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":119,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Cryptosporidium; Goose; Genotype; Biology; Cryptosporidium parvum; Feces; Restriction fragment length polymorphism; Branta; Microbiology; Veterinary medicine; Genetics; Gene; Ecology","score_opus":0.003033148775910943,"score_gpt":0.15779927439419317,"score_spread":0.15476612561828224,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2068366757","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99615896,0.0012969939,0.00003051841,0.00022765744,0.00043924965,0.00023120208,0.00029327464,0.000017941791,0.0013041815],"genre_scores_gemma":[0.9977443,0.00038185308,0.00006229213,0.0011920269,0.000021872822,0.000028720968,0.00044740192,0.000017591146,0.00010391827],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99872905,0.000035558765,0.0002878608,0.00039439948,0.000017159602,0.0005359806],"domain_scores_gemma":[0.999593,0.00008851018,0.000065299304,0.00019882178,0.0000030536883,0.000051303385],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000675549,0.00024443408,0.00031830076,0.00006968503,0.0001537984,0.0000052937344,0.00011773665,0.00021613292,0.0003722543],"category_scores_gemma":[0.0000077643945,0.00023898634,0.000030930787,0.000072160554,0.0002817497,0.000029066745,0.00009491527,0.0003077573,0.00023546681],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042318923,0.000109983965,0.024622794,0.0000057730304,0.00005307131,0.00004212732,0.00009040668,0.000104069266,0.9722188,0.0013465517,0.00095395744,0.00041011398],"study_design_scores_gemma":[0.010786184,0.00027490564,0.40583867,0.00004830059,0.00012528895,0.0020502545,0.0031287796,0.0000019345823,0.42578185,0.0007814723,0.14970548,0.0014768906],"about_ca_topic_score_codex":0.6352083,"about_ca_topic_score_gemma":0.7089676,"teacher_disagreement_score":0.54643697,"about_ca_system_score_codex":0.00056499837,"about_ca_system_score_gemma":0.00030060773,"threshold_uncertainty_score":0.974558},"labels":[],"label_agreement":null},{"id":"W2069774602","doi":"10.1128/aem.05493-11","title":"Biocontrol of Listeria monocytogenes and Escherichia coli O157:H7 in Meat by Using Phages Immobilized on Modified Cellulose Membranes","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":238,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University of Guelph","funders":"University of Guelph","keywords":"Bacteriophage; Lysis; Escherichia coli; Membrane; Listeria monocytogenes; Listeria; Bacteria; Cellulose; Infectivity; Microbiology; Chemistry; Biology; Virus; Virology; Biochemistry","score_opus":0.01763365983793666,"score_gpt":0.20689668718823687,"score_spread":0.1892630273503002,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2069774602","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983329,0.00028756086,0.000024311732,0.000012080852,0.00005308735,0.0003495516,0.00011116033,0.000009443271,0.00081989635],"genre_scores_gemma":[0.9988691,0.00027727475,0.0004625307,0.0001647465,0.000008242339,0.000021096992,0.000041342282,0.000018596773,0.00013705526],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989911,0.000048408827,0.0002781905,0.0004048813,0.00002564612,0.00025177357],"domain_scores_gemma":[0.99966544,0.000029655028,0.00011247355,0.00012822414,6.1671136e-7,0.000063606065],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000061250474,0.00022100624,0.00030870785,0.000038471597,0.00006543136,0.0000107047645,0.00010260362,0.0001412487,0.00079739746],"category_scores_gemma":[0.0000012363188,0.00019945514,0.000037576734,0.00004453055,0.0005123674,0.00006704014,0.000177345,0.000101470745,0.000024808067],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022359863,0.00023675447,0.0020173185,0.000012100631,0.000020673475,0.000002221285,0.00042216232,0.000012585134,0.9958841,0.00001705254,0.000025320223,0.0011260872],"study_design_scores_gemma":[0.0013691017,0.00014832416,0.019182393,0.000009677776,0.00003207172,0.0000246182,0.00028941786,0.00008090438,0.9774811,0.000028849454,0.0011114894,0.00024200854],"about_ca_topic_score_codex":0.00078160944,"about_ca_topic_score_gemma":0.000054045435,"teacher_disagreement_score":0.018402983,"about_ca_system_score_codex":0.000052890726,"about_ca_system_score_gemma":0.0000018714443,"threshold_uncertainty_score":0.87309426},"labels":[],"label_agreement":null},{"id":"W2070841501","doi":"10.1128/aem.71.7.3495-3503.2005","title":"Description of Toluene Inhibition of Methyl Bromide Biodegradation in Seawater and Isolation of a Marine Toluene Oxidizer That Degrades Methyl Bromide","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"University of Miami; National Aeronautics and Space Administration; National Oceanic and Atmospheric Administration; National Science Foundation","keywords":"Biodegradation; Toluene; Bromide; Chemistry; Environmental chemistry; Seawater; Pseudomonas putida; Cometabolism; Organic chemistry; Bioremediation; Bacteria; Biology; Enzyme; Ecology","score_opus":0.011238665055136604,"score_gpt":0.19083699873226867,"score_spread":0.17959833367713207,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2070841501","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991608,0.00010798408,0.0001419121,0.00006649137,0.000020271245,0.00024606026,0.000039403596,0.0000053381427,0.00021168428],"genre_scores_gemma":[0.99555016,0.00032886097,0.0035933536,0.00009655862,0.000007152452,0.000010645903,0.00036847207,0.000009415155,0.000035392248],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989518,0.00016353006,0.0004010334,0.00026075952,0.00003633421,0.00018653866],"domain_scores_gemma":[0.9994855,0.00008807936,0.00023313718,0.00015915273,0.000001995921,0.000032167245],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002634787,0.00016201411,0.00035965114,0.00009087175,0.00005109849,0.0000024792405,0.00008249603,0.00021176442,0.000602276],"category_scores_gemma":[0.0000037560424,0.00015424233,0.000036927733,0.00007589305,0.00070478645,0.00013105177,0.00028687704,0.00013906384,0.000008835781],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016293279,0.000161912,0.0740972,0.000023674093,0.00001787411,1.5272488e-7,0.00058085145,0.00014599237,0.9216628,0.000042792057,0.00002810074,0.0030757238],"study_design_scores_gemma":[0.00084554876,0.00014462648,0.26619735,0.000009919506,0.000026214599,0.000013953357,0.00021924451,0.00006966737,0.73149735,0.00062805694,0.00022162957,0.00012645467],"about_ca_topic_score_codex":0.00092407654,"about_ca_topic_score_gemma":0.0019667586,"teacher_disagreement_score":0.19210014,"about_ca_system_score_codex":0.00007089661,"about_ca_system_score_gemma":0.0000033664364,"threshold_uncertainty_score":0.65945},"labels":[],"label_agreement":null},{"id":"W2072952450","doi":"10.1128/aem.67.7.3077-3085.2001","title":"Microbial Diversity of the Brine-Seawater Interface of the Kebrit Deep, Red Sea, Studied via 16S rRNA Gene Sequences and Cultivation Methods","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":144,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Universität Regensburg","keywords":"Halophile; Brine; 16S ribosomal RNA; Biology; Seawater; Phylogenetic tree; Halotolerance; Extreme environment; Ribosomal RNA; Artificial seawater; Extremophile; Thermophile; Botany; Salinity; Ecology; Bacteria; Gene; Chemistry; Biochemistry; Paleontology","score_opus":0.009517948063453695,"score_gpt":0.22510744152568926,"score_spread":0.21558949346223558,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2072952450","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987135,0.00009738461,0.00017998106,0.0003069464,0.000101182864,0.00029238692,0.000028467992,0.000004785851,0.00027535815],"genre_scores_gemma":[0.998713,0.0001926843,0.000648161,0.00027875093,0.000010661352,0.000004225422,0.00002420795,0.0000063267503,0.00012198652],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998935,0.0003284584,0.0002350965,0.0002627218,0.00003341817,0.00020532351],"domain_scores_gemma":[0.9994394,0.00008610454,0.00018017227,0.00026390093,0.0000020494979,0.00002833294],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000253592,0.00015617273,0.00024745485,0.0000148857125,0.00039956803,0.0000024091603,0.00038058145,0.00014952628,0.0004967665],"category_scores_gemma":[0.0000057609523,0.00010209555,0.000053821277,0.00007583451,0.0019251265,0.00003844831,0.0025207533,0.00021836539,0.000008002236],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006390229,0.000057326048,0.1061325,0.000005642168,0.000034507077,2.021228e-7,0.00068732817,0.00006332592,0.89161897,0.000010112789,0.00015013477,0.0011760355],"study_design_scores_gemma":[0.00060980336,0.00007429271,0.39855784,0.0000062537074,0.000051160252,0.000071636714,0.00028738918,0.000021615711,0.5969607,0.00082636427,0.0023742989,0.00015860875],"about_ca_topic_score_codex":0.00048144904,"about_ca_topic_score_gemma":0.0004217663,"teacher_disagreement_score":0.29465824,"about_ca_system_score_codex":0.000054125092,"about_ca_system_score_gemma":0.000002988592,"threshold_uncertainty_score":0.7093209},"labels":[],"label_agreement":null},{"id":"W2073890852","doi":"10.1128/aem.01214-07","title":"Packaging of Live <i>Legionella pneumophila</i> into Pellets Expelled by <i>Tetrahymena</i> spp. Does Not Require Bacterial Replication and Depends on a Dot/Icm-Mediated Survival Mechanism","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":101,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research; Dalhousie University; University of Virginia; U.S. Environmental Protection Agency","keywords":"Legionella pneumophila; Microbiology; Biology; Legionella; Virulence; Vacuole; Bacteria; Tetrahymena; Bacterial outer membrane; Protozoa; Phagocytosis; Ciliate; Escherichia coli; Cell biology; Gene; Biochemistry","score_opus":0.006702314097483148,"score_gpt":0.1998487933860447,"score_spread":0.19314647928856155,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2073890852","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985923,0.00027669212,0.000034812954,0.00025749134,0.00009442964,0.00029144963,0.0002014236,0.000010281103,0.00024110152],"genre_scores_gemma":[0.9935805,0.003975106,0.00008012339,0.00042512672,0.00011771563,0.000030820313,0.0014403925,0.00002978387,0.00032039356],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985187,0.00006583707,0.00028128922,0.0007387316,0.000081434366,0.00031402113],"domain_scores_gemma":[0.9993436,0.000044584544,0.00012505219,0.0003669107,0.000006718819,0.000113137125],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014700498,0.00025416908,0.00028919833,0.0000445644,0.00017598417,0.000009369342,0.00014965798,0.00026931477,0.000026642932],"category_scores_gemma":[0.000009218638,0.00020869277,0.000052027393,0.00003488639,0.0005029163,0.0000072106563,0.00024617024,0.00013937733,0.000018698905],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038200352,0.00012221182,0.0005785857,0.000016404854,0.0000448956,0.0000057159014,0.00022593455,5.1923274e-7,0.99755275,0.00006851255,0.0006205471,0.00038191158],"study_design_scores_gemma":[0.0014878274,0.00036743312,0.0002426391,0.00000700618,0.000012318466,0.000085651554,0.00028685154,0.000004595835,0.9879286,0.000082474486,0.009234601,0.0002599691],"about_ca_topic_score_codex":0.00004692556,"about_ca_topic_score_gemma":0.000009231809,"teacher_disagreement_score":0.009624125,"about_ca_system_score_codex":0.000021621252,"about_ca_system_score_gemma":0.000017301756,"threshold_uncertainty_score":0.8510244},"labels":[],"label_agreement":null},{"id":"W2075006176","doi":"10.1128/aem.06416-11","title":"Transcriptional Analysis of a Dehalococcoides-Containing Microbial Consortium Reveals Prophage Activation","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Dehalococcoides; Biology; Gene; Prophage; Microbiology; Shotgun sequencing; Reductive dechlorination; Genetics; Genome; Chemistry; Escherichia coli; Vinyl chloride; Biodegradation","score_opus":0.012646472275349397,"score_gpt":0.18218973021478016,"score_spread":0.16954325793943076,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2075006176","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974498,0.000019656309,0.00019783962,0.000017047045,0.000038196446,0.0002641247,0.00017753588,0.000015761305,0.0018200093],"genre_scores_gemma":[0.99816763,0.000030725972,0.0010157579,0.00035797936,0.0000104335995,0.000008843262,0.0003241363,0.000009865392,0.00007464143],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99891955,0.000043111777,0.00035780537,0.00038151967,0.00005612999,0.00024186319],"domain_scores_gemma":[0.99958855,0.00002337565,0.00017831752,0.00013911151,0.0000017175557,0.0000689052],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00016100469,0.00017634338,0.00030132977,0.00009379127,0.0000779372,0.0000053251542,0.00012222413,0.00014238809,0.004750361],"category_scores_gemma":[0.000003229738,0.0001591371,0.00008990639,0.00019311323,0.0005266607,0.000069898444,0.00008796212,0.00009308581,0.00008620671],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000110291425,0.00012356382,0.05937493,0.000004008102,0.00014579458,9.803091e-7,0.0007194561,0.000008700541,0.93843406,0.000111504676,0.00006448915,0.00090219476],"study_design_scores_gemma":[0.00068325805,0.000117359305,0.48571977,0.0000039691063,0.00026218971,0.000011395601,0.00029308174,0.00002024359,0.5116238,0.00006691628,0.00094249984,0.00025550742],"about_ca_topic_score_codex":0.00009201307,"about_ca_topic_score_gemma":0.00003081965,"teacher_disagreement_score":0.42681026,"about_ca_system_score_codex":0.00006989079,"about_ca_system_score_gemma":0.0000048679353,"threshold_uncertainty_score":0.99615943},"labels":[],"label_agreement":null},{"id":"W2075038168","doi":"10.1128/aem.03382-14","title":"Resistance of Trichoplusia ni Populations Selected by Bacillus thuringiensis Sprays to Cotton Plants Expressing Pyramided Bacillus thuringiensis Toxins Cry1Ac and Cry2Ab","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect Resistance and Genetics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Bacillus thuringiensis; Cry1Ac; Trichoplusia; Biology; Cabbage looper; Bt cotton; Toxin; Biopesticide; Genetically modified crops; Noctuidae; Microbiology; Botany; PEST analysis; Agronomy; Bacteria; Transgene; Genetics; Gene; Pesticide","score_opus":0.004496081922292348,"score_gpt":0.18494388324491087,"score_spread":0.18044780132261853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2075038168","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99704474,0.0011582342,0.0006847236,0.000054850974,0.00006867563,0.00024915318,0.00029259495,0.000013030927,0.00043400374],"genre_scores_gemma":[0.99626434,0.00047281606,0.0018993813,0.00030001134,0.000057074558,0.000017112843,0.00060838915,0.000028920887,0.00035192998],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99863917,0.00005258076,0.00031037815,0.00055875507,0.00006135003,0.00037775905],"domain_scores_gemma":[0.99940324,0.000022779566,0.0001531221,0.00029844214,0.000011461834,0.000110971974],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00010002715,0.00026203252,0.000308183,0.00006290675,0.00018364975,0.000017501854,0.00012370932,0.00024252961,0.000013296546],"category_scores_gemma":[0.000021508347,0.00026264696,0.00003855212,0.0000744067,0.00026005472,0.000004821884,0.00018767474,0.00009420863,0.0000049740333],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017000336,0.000052422787,0.0020292778,0.00002318406,0.000037088965,7.3088216e-7,0.00018521743,0.000036866913,0.99463826,0.00003519617,0.0014118105,0.0013799147],"study_design_scores_gemma":[0.0010493107,0.00023035321,0.022805337,0.00002059652,0.000037944395,0.000027470509,0.00019908676,0.000011632051,0.944259,0.00006011474,0.030891009,0.0004081584],"about_ca_topic_score_codex":0.000018735775,"about_ca_topic_score_gemma":0.000100656114,"teacher_disagreement_score":0.0503793,"about_ca_system_score_codex":0.00002783918,"about_ca_system_score_gemma":0.000012521218,"threshold_uncertainty_score":0.9999826},"labels":[],"label_agreement":null},{"id":"W2075730880","doi":"10.1128/aem.02363-06","title":"Use of <i>Tetrahymena thermophila</i> To Study the Role of Protozoa in Inactivation of Viruses in Water","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Wilfrid Laurier University; University of Waterloo","funders":"Canadian Water Network","keywords":"Tetrahymena; Ciliate; Biology; Protozoa; Microbiology; Bacteriophage; Vacuole; Bacteria; Escherichia coli; Biochemistry; Ecology","score_opus":0.007524283686752582,"score_gpt":0.19211677295315266,"score_spread":0.18459248926640007,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2075730880","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989745,0.000011573633,0.0000027401259,0.000020826232,0.000010830247,0.00073270133,0.000024048664,0.0000016433854,0.00022111459],"genre_scores_gemma":[0.9997827,0.0000063550083,0.000070724745,0.000057716254,0.0000036400436,0.000045340388,0.000013289648,0.00000656543,0.000013701546],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993569,0.000037969374,0.00028585142,0.00016553607,0.000026310292,0.00012743422],"domain_scores_gemma":[0.9997685,0.00002891595,0.00007098877,0.000120492085,6.262863e-7,0.000010484648],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008039738,0.0000895895,0.00015962143,0.000040485793,0.000019676048,0.0000025051827,0.00008312509,0.000043317552,0.00016994003],"category_scores_gemma":[9.287002e-7,0.000058935588,0.000018630582,0.00006295592,0.00018356128,0.000054285516,0.00014896259,0.00006683131,0.000008742051],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006547344,0.0005238896,0.0805639,0.0000019455724,0.0000054838056,2.9526151e-7,0.0008032834,0.0001702444,0.9165951,0.000012327078,0.0000046141054,0.0012534339],"study_design_scores_gemma":[0.00019864271,0.00008498704,0.35215726,0.0000028498794,0.0000037880761,0.00000221092,0.0004785069,0.0000013621363,0.64630836,0.000055897777,0.0006625826,0.000043537264],"about_ca_topic_score_codex":0.0026861052,"about_ca_topic_score_gemma":0.00047696638,"teacher_disagreement_score":0.27159336,"about_ca_system_score_codex":0.00004025215,"about_ca_system_score_gemma":0.0000010125505,"threshold_uncertainty_score":0.40606055},"labels":[],"label_agreement":null},{"id":"W2076311034","doi":"10.1128/aem.00686-13","title":"Genetic Diversity of the Flagellin Genes of Clostridium botulinum Groups I and II","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Botulinum Toxin and Related Neurological Disorders","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Canada","funders":"Bundesinstitut für Risikobewertung; Rijksinstituut voor Volksgezondheid en Milieu; Defence Research and Development Canada","keywords":"Clostridium botulinum; Botulism; Serotype; Flagellin; Biology; Clostridiaceae; Microbiology; Typing; Clostridium butyricum; Genetics; Gene; Toxin; Bacteria","score_opus":0.004458208814605364,"score_gpt":0.1530292929185212,"score_spread":0.1485710841039158,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2076311034","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99799985,0.0011087277,0.000006284267,0.00034421025,0.000036602654,0.00028976033,0.00001763328,0.0000049050404,0.00019201607],"genre_scores_gemma":[0.99726707,0.0021067862,0.00010581479,0.0004187171,0.000010119356,0.0000033690544,0.000010015195,0.0000052194077,0.00007287853],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99950546,0.00002037811,0.00015080722,0.00017398868,0.000027263413,0.00012210774],"domain_scores_gemma":[0.99975413,0.000024583878,0.00006404221,0.00011369308,0.0000017536101,0.000041801595],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000024461307,0.00009556989,0.00019501921,0.000015845386,0.000098042,9.047302e-7,0.000060835555,0.00015515396,0.00014305074],"category_scores_gemma":[0.000001439184,0.000058691116,0.000042190153,0.00002829729,0.00069960987,0.000007760196,0.0004318179,0.000117476404,0.0000070841575],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034384102,0.0001050525,0.035336897,0.000019814042,0.000032879627,7.313139e-7,0.00010737835,0.0000030436731,0.96225715,0.00003387172,0.000090802576,0.0019779964],"study_design_scores_gemma":[0.002325711,0.00070977403,0.7172915,0.00001285246,0.00017035445,0.00012819622,0.00042185784,0.000030806805,0.27649716,0.0010758823,0.0011655592,0.0001703763],"about_ca_topic_score_codex":0.000020046979,"about_ca_topic_score_gemma":7.4096437e-7,"teacher_disagreement_score":0.68575996,"about_ca_system_score_codex":0.0000046669747,"about_ca_system_score_gemma":0.0000026143766,"threshold_uncertainty_score":0.25777417},"labels":[],"label_agreement":null},{"id":"W2076330929","doi":"10.1128/aem.01889-10","title":"Viability of <i>Bacillus licheniformis</i> and <i>Bacillus thuringiensis</i> Spores as a Model for Predicting the Fate of <i>Bacillus anthracis</i> Spores during Composting of Dead Livestock","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture Food and Rural Development; Agriculture and Agri-Food Canada","funders":"","keywords":"Bacillus licheniformis; Bacillus thuringiensis; Spore; Bacillus anthracis; Manure; Biology; Microbiology; Bacillus (shape); Bacillales; Compost; Colony-forming unit; Bacilli; Endospore; Bacteria; Food science; Bacillus subtilis; Agronomy","score_opus":0.005973103533580608,"score_gpt":0.20726776120393045,"score_spread":0.20129465767034985,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2076330929","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99750626,0.000503341,0.00023566595,0.000030500547,0.00006722459,0.0006997835,0.0007831306,0.0000070576843,0.00016701675],"genre_scores_gemma":[0.9982065,0.0004425942,0.0009430395,0.00004401441,0.00006692915,0.0000384503,0.0001915862,0.000029160588,0.00003770745],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983659,0.000034608413,0.0005710456,0.0005247049,0.00009103748,0.00041271443],"domain_scores_gemma":[0.99902475,0.000105008825,0.00033445188,0.0004028121,0.000034643635,0.00009833281],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041657782,0.00028277477,0.00047596122,0.00004444137,0.0001872114,0.000009534886,0.00025038805,0.00029349778,0.000010292914],"category_scores_gemma":[0.00005579517,0.00022194041,0.0001199634,0.000050088434,0.0015126378,0.000009758102,0.00047620988,0.00021434766,6.3182574e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00067094015,0.00011344018,0.0076569933,0.00022360568,0.00007691224,5.2114143e-7,0.00046781014,0.00012914148,0.9879463,0.00009116089,0.0000061644773,0.0026170418],"study_design_scores_gemma":[0.0014793746,0.00038784684,0.0064792847,0.000021002332,0.000053171818,0.00009842022,0.0003800212,0.0005833933,0.98958194,0.00019680447,0.0004961713,0.00024258922],"about_ca_topic_score_codex":0.00006070156,"about_ca_topic_score_gemma":0.000038723687,"teacher_disagreement_score":0.0023744525,"about_ca_system_score_codex":0.000010404541,"about_ca_system_score_gemma":0.000039974464,"threshold_uncertainty_score":0.9050467},"labels":[],"label_agreement":null},{"id":"W2076706379","doi":"10.1128/aem.00767-14","title":"Comparison of Five Bacteriophages as Models for Viral Aerosol Studies","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":215,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec","funders":"Canadian Institutes of Health Research","keywords":"Infectivity; Virology; Virus; Bioaerosol; Biology; Microbiology; Influenza A virus; Chemistry; Aerosol","score_opus":0.01502265654876599,"score_gpt":0.26770706484280155,"score_spread":0.25268440829403555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2076706379","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975736,0.00014631281,0.0005451357,0.00006760412,0.00011506688,0.00029677158,0.00009452922,0.000013994768,0.0011469948],"genre_scores_gemma":[0.9975256,0.00011330579,0.0013753028,0.00029414668,0.00002997475,0.00004916904,0.000106433006,0.000015272657,0.00049085205],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99912107,0.000023750168,0.00026640634,0.00032916578,0.000025291973,0.00023430696],"domain_scores_gemma":[0.99959344,0.0000863993,0.00012621624,0.00014404317,0.000001455706,0.000048435046],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000073911106,0.00017453759,0.0003399531,0.000018782697,0.00013268304,0.000008029107,0.000114968025,0.000095894466,0.00029478784],"category_scores_gemma":[0.0000040662667,0.0001546324,0.0000614387,0.00002047105,0.0005467697,0.000082691484,0.00023335047,0.00008107077,0.00009446323],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049082748,0.00010048588,0.00027058314,0.00001289365,0.000037381804,1.1620945e-7,0.0007358401,0.00024335633,0.99363524,0.00018553072,0.00050841656,0.0042210687],"study_design_scores_gemma":[0.0017720271,0.00083500816,0.005678075,0.000021980977,0.00012017271,0.000053525724,0.002881816,0.0008663775,0.9601489,0.0018955569,0.025142284,0.0005843083],"about_ca_topic_score_codex":0.00004586332,"about_ca_topic_score_gemma":0.000017198565,"teacher_disagreement_score":0.033486377,"about_ca_system_score_codex":0.000052700656,"about_ca_system_score_gemma":0.0000015058267,"threshold_uncertainty_score":0.6305726},"labels":[],"label_agreement":null},{"id":"W2076853802","doi":"10.1128/aem.71.2.1058-1065.2005","title":"<i>Desulfitobacterium hafniense</i> Is Present in a High Proportion within the Biofilms of a High-Performance Pentachlorophenol-Degrading, Methanogenic Fixed-Film Reactor","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Pentachlorophenol; Bacteria; Temperature gradient gel electrophoresis; Biofilm; Microbiology; Chlorophenol; Chemistry; Archaea; Acclimatization; Bioreactor; Biology; Food science; Environmental chemistry; Chromatography; 16S ribosomal RNA; Phenol; Ecology","score_opus":0.005125844641015917,"score_gpt":0.17456185150191744,"score_spread":0.16943600686090152,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2076853802","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99852216,0.00006671555,0.0000042308498,0.00043111984,0.00012080596,0.0005178076,0.00015273917,0.000015989473,0.00016845344],"genre_scores_gemma":[0.99812025,0.00027141834,0.00052788964,0.0006624638,0.000050386818,0.000024253977,0.00017299189,0.000017623912,0.00015274173],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984976,0.000054593995,0.0004970744,0.00048705906,0.00011438909,0.00034926587],"domain_scores_gemma":[0.9993406,0.00002644814,0.0002854343,0.00027488152,0.0000016827619,0.00007094727],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002581074,0.00025140462,0.00027807342,0.000041784133,0.00008601486,0.000012855083,0.0002470928,0.00016547376,0.0010201215],"category_scores_gemma":[0.000003181267,0.00017485309,0.000042879623,0.00013239312,0.00060471933,0.000110318855,0.0002519207,0.00018938673,0.00026933663],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009155911,0.00016663168,0.028029794,0.0000079935435,0.000016444072,8.011823e-7,0.0005937711,0.00007107521,0.96770734,0.000017455823,0.00050142396,0.0027957025],"study_design_scores_gemma":[0.00088440045,0.00012020256,0.11145112,0.000008098777,0.000022066297,0.000031573167,0.00019860727,0.000081222475,0.88308275,0.000017800307,0.003862352,0.00023983525],"about_ca_topic_score_codex":0.00030245606,"about_ca_topic_score_gemma":0.00009888548,"teacher_disagreement_score":0.084624626,"about_ca_system_score_codex":0.00016016592,"about_ca_system_score_gemma":0.00000802951,"threshold_uncertainty_score":0.99989307},"labels":[],"label_agreement":null},{"id":"W2077140605","doi":"10.1128/aem.01538-07","title":"Host-Synthesized Secondary Compounds Influence the In Vitro Interactions between Fungal Endophytes of Maize","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Allelopathy and phytotoxic interactions","field":"Agricultural and Biological Sciences","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Biology; Allelopathy; Fusarium; Botany; Antagonism; Secondary metabolism; Poaceae; Fungi imperfecti; Microbiology; Germination; Biochemistry; Enzyme; Biosynthesis; Receptor","score_opus":0.00643173292784833,"score_gpt":0.1876489189564207,"score_spread":0.18121718602857237,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077140605","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99775636,0.00008940157,0.0000032304326,0.00015352241,0.000051306426,0.0001523244,0.00020020838,0.00000820587,0.0015854453],"genre_scores_gemma":[0.9994872,0.00003509981,0.000058829475,0.00021204608,0.00007289395,0.000013179286,0.000083682666,9.627134e-7,0.00003608222],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993204,0.000037445814,0.00023727368,0.00017849889,0.000026646903,0.00019977266],"domain_scores_gemma":[0.99920005,0.0006339935,0.000086878244,0.000045229903,0.0000021793812,0.00003169825],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016841837,0.00010937905,0.0001661337,0.00001368618,0.00013913722,0.000007432711,0.00012496748,0.00007027478,0.00018402662],"category_scores_gemma":[0.0000041135454,0.00004542545,0.000042175612,0.00006334384,0.00026376676,0.00004577059,0.00008030968,0.00021707287,0.000016921533],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000860413,0.000049855178,0.012658657,0.000001781944,0.000013331972,0.0000012428794,0.00015225816,5.101674e-7,0.9770772,0.000051285642,0.000013015193,0.009894829],"study_design_scores_gemma":[0.00017028068,0.00005057609,0.57140774,0.0000046470495,0.000007979458,0.000040417428,0.0011525679,5.7345596e-7,0.41945827,0.00013578167,0.0074738585,0.00009732771],"about_ca_topic_score_codex":0.00007211654,"about_ca_topic_score_gemma":0.00009994628,"teacher_disagreement_score":0.5587491,"about_ca_system_score_codex":0.00002475911,"about_ca_system_score_gemma":0.0000024429164,"threshold_uncertainty_score":0.20149624},"labels":[],"label_agreement":null},{"id":"W2078731516","doi":"10.1128/aem.00342-06","title":"Evidence for Existence of “Mesotogas,” Members of the Order<i>Thermotogales</i>Adapted to Low-Temperature Environments","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Directorate for Biological Sciences; Dalhousie University; Genome Atlantic; Towson University; Canadian Institutes of Health Research; Genome Canada","keywords":"Order (exchange); Computational biology; Biology; Computer science; Microbiology; Chemistry; Business","score_opus":0.008537360052530744,"score_gpt":0.19454095866127075,"score_spread":0.18600359860874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078731516","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975135,0.00028274267,0.00005763326,0.00011927982,0.000082701146,0.0008797715,0.000104965206,0.000006009677,0.0009534169],"genre_scores_gemma":[0.99758536,0.000104860366,0.0011566493,0.00028708467,0.000020168389,0.0000587997,0.000040793133,0.000020240039,0.00072602474],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987249,0.000049307357,0.00037356114,0.00044168223,0.00010249329,0.0003080745],"domain_scores_gemma":[0.99930334,0.00010501151,0.00019365922,0.0003320444,0.0000013666539,0.00006460452],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017228689,0.00022408913,0.00029192664,0.00002375412,0.000115403374,0.0000053834356,0.0003180171,0.00017161267,0.00048650047],"category_scores_gemma":[0.000007495999,0.00015823757,0.00007881789,0.0001342229,0.0006708784,0.00004129974,0.00033364378,0.0001239879,0.000029299059],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008643999,0.00010627414,0.0040586554,0.000020017636,0.000018744116,3.4399335e-7,0.00017167682,0.0017008525,0.99304897,0.00015784,0.00026362162,0.00036655078],"study_design_scores_gemma":[0.0013022695,0.00027620854,0.041575562,0.0000874695,0.00008557504,0.000024912291,0.0002447461,0.0000552782,0.93885016,0.00061806326,0.016447678,0.0004320817],"about_ca_topic_score_codex":0.00012211007,"about_ca_topic_score_gemma":0.000018133287,"teacher_disagreement_score":0.054198828,"about_ca_system_score_codex":0.000070342045,"about_ca_system_score_gemma":0.0000054348616,"threshold_uncertainty_score":0.6452741},"labels":[],"label_agreement":null},{"id":"W2078739824","doi":"10.1128/aem.06511-11","title":"Time-Dependent Profiles of Transcripts Encoding Lignocellulose-Modifying Enzymes of the White Rot Fungus Phanerochaete carnosa Grown on Multiple Wood Substrates","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme-mediated dye degradation","field":"Agricultural and Biological Sciences","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Phanerochaete; Lignin; Fungus; Gene; Biology; Peroxidase; Enzyme; Biochemistry; Chitinase; Chrysosporium; Botany","score_opus":0.014918404937781736,"score_gpt":0.1603586243584436,"score_spread":0.14544021942066188,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078739824","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984921,0.00035858504,0.0000011558508,0.000038466125,0.00006261314,0.00032841478,0.00025424306,0.000016770371,0.0004476235],"genre_scores_gemma":[0.99950784,0.000081266466,0.00003873312,0.000049885042,0.000032476604,0.00002040031,0.0002065642,0.0000025778327,0.000060264796],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990783,0.00005943238,0.0002712983,0.00029845294,0.00006879758,0.00022371631],"domain_scores_gemma":[0.9996079,0.000097104865,0.0001747001,0.00007503908,0.0000040429136,0.000041210493],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000105588224,0.00017876261,0.00022582342,0.000015302292,0.000103972496,0.0000044908465,0.00019903718,0.00015064137,0.0001620059],"category_scores_gemma":[0.0000051887428,0.00007446185,0.00006768925,0.00006415412,0.000304886,0.000038595645,0.00006781809,0.000118676486,0.0000125907545],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000589663,0.00012877437,0.014753099,0.0000115490775,0.000022658272,6.5919613e-7,0.0006824241,0.0000061042037,0.982785,0.00007105964,0.000012831528,0.0014669003],"study_design_scores_gemma":[0.0002951742,0.0002002311,0.034092635,0.00001743611,0.00002361836,0.0000082354045,0.0010263564,0.000010091916,0.96406746,0.000048157854,0.00007504674,0.0001355291],"about_ca_topic_score_codex":0.00005879746,"about_ca_topic_score_gemma":0.000052251125,"teacher_disagreement_score":0.019339537,"about_ca_system_score_codex":0.00001883901,"about_ca_system_score_gemma":0.0000026425173,"threshold_uncertainty_score":0.30364662},"labels":[],"label_agreement":null},{"id":"W2078831334","doi":"10.1128/aem.01120-09","title":"Impact of an 8-Year-Old Transgenic Poplar Plantation on the Ectomycorrhizal Fungal Community","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Ontario Museum; Université Laval; University of Toronto; Natural Resources Canada; Canadian Forest Service","funders":"","keywords":"Biology; Rhizosphere; Botany; Internal transcribed spacer; Mycelium; Soil microbiology; Fungal Diversity; Gene; Soil water; Ecology; Genetics; Bacteria; Ribosomal RNA","score_opus":0.008072386614448453,"score_gpt":0.1932429783163544,"score_spread":0.18517059170190595,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078831334","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99648523,0.0000264282,8.2295384e-7,0.00008465915,0.000027436627,0.00014872168,0.0023036893,0.000012906551,0.0009100768],"genre_scores_gemma":[0.9960997,0.00016265971,0.000010251386,0.00028773473,0.00003939423,0.0000037909697,0.003375963,7.1234547e-7,0.000019770003],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999467,0.00010766466,0.00012209304,0.00012683628,0.00002766867,0.00014871525],"domain_scores_gemma":[0.9993511,0.0004948403,0.00004852214,0.000060474737,0.0000014745833,0.000043596585],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000099012264,0.00011417182,0.000121768695,0.000008577172,0.0002124873,0.00001013301,0.00012544691,0.00008386256,0.0014735752],"category_scores_gemma":[0.00000316001,0.00004059888,0.000060061215,0.000039610823,0.00002457538,0.000033060696,0.0000141573,0.00020831682,0.00007411144],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017844242,0.00018170822,0.0105100935,6.8865614e-7,0.000013435698,4.7828394e-7,0.00011147135,0.000009201058,0.9845462,0.0006200758,0.00019709147,0.0036311536],"study_design_scores_gemma":[0.00037300316,0.0053931866,0.8852906,0.000020226444,0.000053801934,0.0002911591,0.001840812,0.00003827795,0.10241508,0.0018980546,0.0019449493,0.0004408231],"about_ca_topic_score_codex":0.0003482693,"about_ca_topic_score_gemma":0.00003883478,"teacher_disagreement_score":0.8821311,"about_ca_system_score_codex":0.00001591517,"about_ca_system_score_gemma":0.0000015100101,"threshold_uncertainty_score":0.99943924},"labels":[],"label_agreement":null},{"id":"W2078924512","doi":"10.1128/aem.03793-13","title":"Intestinal Microbiota and Species Diversity of <i>Campylobacter</i> and <i>Helicobacter</i> spp. in Migrating Shorebirds in Delaware Bay","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":70,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"U.S. Fish and Wildlife Service; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Office of Research and Development; U.S. Environmental Protection Agency","keywords":"Biology; Campylobacter; Arcobacter; Fusobacteria; Calidris; Bacteroidetes; Helicobacter; Microbiology; 16S ribosomal RNA; Proteobacteria; Campylobacter coli; Campylobacter jejuni; Ecology; Bacteria; Genetics; Helicobacter pylori","score_opus":0.007947335314384246,"score_gpt":0.16184291924237285,"score_spread":0.1538955839279886,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078924512","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990427,0.00030327367,0.0000024476751,0.00018460723,0.00002825553,0.00014437505,0.000075127384,0.00000948662,0.00020976525],"genre_scores_gemma":[0.9988034,0.00042987455,0.0001369874,0.00043564386,0.000034489287,0.000004389578,0.00013768101,0.000001646559,0.000015907626],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988139,0.000108586515,0.00030563117,0.00043793756,0.000025226667,0.0003086882],"domain_scores_gemma":[0.99953896,0.00023881007,0.00009977518,0.00005271216,0.0000023948646,0.00006732317],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026359633,0.00020083113,0.0003855353,0.000025988946,0.00009410166,0.00001020423,0.00011945817,0.000175498,0.000051176],"category_scores_gemma":[0.000012243317,0.00010747605,0.000027815835,0.00007281761,0.00048277085,0.00004172712,0.00053733675,0.00016271001,0.0000033527301],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023459515,0.00002874085,0.47376627,0.000006386965,0.0000029466235,9.698747e-7,0.000100151774,3.4141632e-7,0.52270776,0.000050733815,0.000013233532,0.0032989646],"study_design_scores_gemma":[0.00043695135,0.00014891347,0.9893725,0.000023413997,0.000008578594,0.000083171806,0.00074993726,0.0000097470665,0.006944931,0.00022026044,0.001801648,0.00019997181],"about_ca_topic_score_codex":0.0002939948,"about_ca_topic_score_gemma":0.0011672665,"teacher_disagreement_score":0.51576287,"about_ca_system_score_codex":0.000022724407,"about_ca_system_score_gemma":0.0000014509799,"threshold_uncertainty_score":0.43827462},"labels":[],"label_agreement":null},{"id":"W2079434832","doi":"10.1128/aem.66.12.5484-5487.2000","title":"Osmotic Stress-Induced Genetic Rearrangements in <i>Escherichia coli</i> H10407 Detected by Randomly Amplified Polymorphic DNA Analysis","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"RAPD; Biology; DNA; Escherichia coli; Genetics; Amplicon; Osmotic shock; Agarose gel electrophoresis; DNA profiling; Molecular biology; Polymerase chain reaction; Gene; Genetic diversity; Population","score_opus":0.003205263930779763,"score_gpt":0.18462043991368068,"score_spread":0.1814151759829009,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2079434832","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977345,0.0005443517,0.0006048935,0.00008205643,0.000011360194,0.0004883418,0.00021108762,0.000020913869,0.00030248653],"genre_scores_gemma":[0.9948327,0.0008357707,0.00053066696,0.00083821476,0.000025302155,0.0001850173,0.00245368,0.000026737673,0.0002719011],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985037,0.00008270683,0.00031933415,0.00067455834,0.0000389249,0.00038080482],"domain_scores_gemma":[0.99944067,0.000010606996,0.00007706396,0.00037976928,0.0000028420427,0.00008907746],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00008243163,0.00027068696,0.00031398033,0.00007355544,0.00009970717,0.000013113163,0.00020250707,0.0003385917,0.0002507304],"category_scores_gemma":[0.0000018809368,0.00026996736,0.00009455896,0.00017217081,0.00020703493,0.0000022083743,0.00008793986,0.0001381954,0.000025333971],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012321107,0.00014407666,0.0050778785,0.000003832967,0.00019256062,0.0000020551995,0.000016695414,0.000017067683,0.99178773,0.0000063864222,0.00025646604,0.0023720462],"study_design_scores_gemma":[0.003014536,0.00028946786,0.05570217,0.0000054649017,0.00027559444,0.000021950267,0.000060706414,0.000029652585,0.9187597,0.000053354557,0.021178234,0.0006091514],"about_ca_topic_score_codex":0.00006945894,"about_ca_topic_score_gemma":0.000055391745,"teacher_disagreement_score":0.073028006,"about_ca_system_score_codex":0.000022074424,"about_ca_system_score_gemma":0.000009690052,"threshold_uncertainty_score":0.99997526},"labels":[],"label_agreement":null},{"id":"W2080541968","doi":"10.1128/aem.02737-14","title":"Biogeography of Heterotrophic Flagellate Populations Indicates the Presence of Generalist and Specialist Taxa in the Arctic Ocean","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval","funders":"","keywords":"Flagellate; Generalist and specialist species; Biogeography; Taxon; The arctic; Ecology; Arctic; Biology; Heterotroph; Phylogeography; Geography; Oceanography; Phylogenetics; Paleontology; Habitat; Geology; Genetics; Bacteria","score_opus":0.012912867079890556,"score_gpt":0.19467694571141966,"score_spread":0.1817640786315291,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2080541968","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985027,0.0009883041,0.000012905837,0.000109041466,0.000021243824,0.000173012,0.00012726491,6.2646444e-7,0.00006493235],"genre_scores_gemma":[0.9993044,0.00023987563,0.000073111616,0.00014307772,0.00002411309,0.000003470431,0.00020298865,0.0000031076363,0.0000058501123],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995711,0.00005695187,0.000111862944,0.00014270417,0.000024751283,0.00009267244],"domain_scores_gemma":[0.9997679,0.0000097782695,0.00007098174,0.00012838346,0.0000022151635,0.000020729269],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001119206,0.00007300019,0.00009003009,0.000023234059,0.000049534217,0.0000039718716,0.00013266336,0.00006705066,0.0000034073626],"category_scores_gemma":[0.0000036586468,0.00004872539,0.00002338633,0.000036676018,0.0007927382,0.0000016110752,0.00012856133,0.00004952881,6.0939755e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034924156,0.000038730654,0.19768475,0.000008016739,0.000016896744,4.8238263e-7,0.0002484746,0.000025050736,0.801316,0.00044247118,0.0000979546,0.000086246415],"study_design_scores_gemma":[0.0015286758,0.00050141924,0.6372404,0.000012130327,0.00007244946,0.00010485433,0.0013482309,0.00001067022,0.35076377,0.0032027059,0.004911036,0.00030363782],"about_ca_topic_score_codex":0.00009532237,"about_ca_topic_score_gemma":0.000026184747,"teacher_disagreement_score":0.45055223,"about_ca_system_score_codex":0.0000029774162,"about_ca_system_score_gemma":0.000003889199,"threshold_uncertainty_score":0.2920877},"labels":[],"label_agreement":null},{"id":"W2081433522","doi":"10.1128/aem.00183-10","title":"Detection of Microcystin-Producing Cyanobacteria in Missisquoi Bay, Quebec, Canada, Using Quantitative PCR","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Aquatic Ecosystems and Phytoplankton Dynamics","field":"Environmental Science","cited_by":91,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Ottawa; Health Canada; Université du Québec à Montréal; National Research Council Canada; Biotechnology Research Institute","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Microcystin; Cyanobacteria; Bay; Biology; Bloom; Algal bloom; Veterinary medicine; Ecology; Phytoplankton; Bacteria; Geography; Nutrient; Medicine","score_opus":0.005138507068378536,"score_gpt":0.18124155886534166,"score_spread":0.17610305179696312,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2081433522","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99916595,0.000026854274,0.00016785259,0.000012344009,0.0001667955,0.00018814862,0.000059882124,0.000004528949,0.00020766379],"genre_scores_gemma":[0.99859697,0.0000071285413,0.0012234454,0.000050252343,0.00001590086,0.000005846087,0.00004277678,0.000012254547,0.000045418914],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999074,0.000029179848,0.00028924335,0.0003358289,0.000042041916,0.00022970002],"domain_scores_gemma":[0.99959975,0.000047202877,0.00014286557,0.00015624787,7.7729214e-7,0.000053161162],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001290284,0.00015365446,0.00022906286,0.00002740641,0.000070568756,0.0000056141907,0.00009570561,0.000110718305,0.00029081848],"category_scores_gemma":[0.000004966399,0.00014837988,0.000019366305,0.00005785683,0.00021985278,0.000041203424,0.00011662586,0.0001677781,0.0000125705565],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020606733,0.000023296789,0.049631234,0.000011212154,0.0000069097837,0.0000019598222,0.00025779198,0.00019945847,0.9490945,0.000029499202,0.000009684064,0.00071389496],"study_design_scores_gemma":[0.0010472779,0.00007482646,0.48095948,0.000026279315,0.000032241536,0.00015528686,0.0014905315,0.0028020032,0.5087803,0.0001175114,0.0038951943,0.0006190475],"about_ca_topic_score_codex":0.44656014,"about_ca_topic_score_gemma":0.93493044,"teacher_disagreement_score":0.48837033,"about_ca_system_score_codex":0.00022469113,"about_ca_system_score_gemma":0.000023892293,"threshold_uncertainty_score":0.6050756},"labels":[],"label_agreement":null},{"id":"W2082316288","doi":"10.1128/aem.03333-12","title":"Phylogenetic Delineation of the Novel Phylum Armatimonadetes (Former Candidate Division OP10) and Definition of Two Novel Candidate Divisions","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Phylum; Phylogenetic tree; Biology; Evolutionary biology; Phylogenetics; Candidate gene; Genetics; Computational biology; Gene","score_opus":0.007803318904475359,"score_gpt":0.18965923123686876,"score_spread":0.1818559123323934,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2082316288","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99849826,0.000060379498,0.0004135776,0.00009073856,0.00004602661,0.00034566302,0.0002037869,0.000004717448,0.00033684247],"genre_scores_gemma":[0.9981531,0.00014459352,0.0010813078,0.00033222305,0.0000072212165,0.000022727612,0.00023209008,0.000009673132,0.000017096256],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991561,0.0000550045,0.000301043,0.0002314217,0.000038795984,0.00021759885],"domain_scores_gemma":[0.99943465,0.00009675284,0.00019328532,0.00022635913,0.000002587042,0.000046350757],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001040558,0.00016500067,0.00023144987,0.000027978975,0.00021511852,0.0000048140178,0.00018285828,0.000118424905,0.0008032281],"category_scores_gemma":[0.000005150405,0.00012240635,0.000037482616,0.000060606737,0.0010379521,0.000057221965,0.00057200016,0.00015078105,0.00003327428],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011278695,0.00012767063,0.022176446,0.000009491666,0.000017453338,2.7624136e-8,0.00024231774,0.00013158795,0.9755396,0.00017407519,0.00008687104,0.0014831373],"study_design_scores_gemma":[0.001867186,0.00021425693,0.8015681,0.00002063387,0.00006378643,0.000034972214,0.00029994795,0.00042561872,0.19200607,0.0022362433,0.0009445117,0.00031868918],"about_ca_topic_score_codex":0.0010689663,"about_ca_topic_score_gemma":0.00026541337,"teacher_disagreement_score":0.7835336,"about_ca_system_score_codex":0.000027928378,"about_ca_system_score_gemma":0.0000043902314,"threshold_uncertainty_score":0.87947845},"labels":[],"label_agreement":null},{"id":"W2083038167","doi":"10.1128/aem.00328-06","title":"Sequence Diversity of the<i>Bacillus thuringiensis</i>and<i>B. cereus</i>Sensu Lato Flagellin (H Antigen) Protein: Comparison with H Serotype Diversity","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Masarykova Univerzita; Technische Universität München; Ohio State University","keywords":"Biology; Bacillus cereus; Bacillus thuringiensis; Cereus; Flagellin; Microbiology; Nucleic acid sequence; GenBank; Peptide sequence; Genetics; Gene; Bacteria","score_opus":0.008093295320756084,"score_gpt":0.17905660653536132,"score_spread":0.17096331121460523,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083038167","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988159,0.0002987321,0.000059669568,0.00003450369,0.00002762181,0.00031160266,0.00013740013,0.00000436954,0.00031021424],"genre_scores_gemma":[0.999329,0.0001387755,0.00014161128,0.000055260567,0.00003391371,0.0000037510545,0.00010736473,0.00000880319,0.0001815287],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999185,0.000037787308,0.0001316521,0.00034557914,0.00006161548,0.00023835083],"domain_scores_gemma":[0.9996435,0.0000072572966,0.000084123756,0.00021102541,0.000007403499,0.000046676767],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007697041,0.000155494,0.00019025723,0.000015438725,0.00036618262,0.0000071083905,0.00016558109,0.00014864633,0.00001713796],"category_scores_gemma":[0.0000016413416,0.00011491444,0.000035900197,0.000036941517,0.00069923245,0.0000034430857,0.0014295315,0.000106413245,0.0000047293497],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016521334,0.000051630177,0.119861774,0.000015294094,0.000025114894,0.000001229128,0.000054922017,0.000013629052,0.8793702,0.000050386574,0.000049594448,0.00034099238],"study_design_scores_gemma":[0.0009341323,0.00023425862,0.089821704,0.000009840498,0.000022595317,0.00003164307,0.00011312407,0.0000060908446,0.9022851,0.00007809254,0.006231266,0.00023215172],"about_ca_topic_score_codex":0.00028784847,"about_ca_topic_score_gemma":0.00011021868,"teacher_disagreement_score":0.030040069,"about_ca_system_score_codex":0.000015046531,"about_ca_system_score_gemma":0.000010228797,"threshold_uncertainty_score":0.4686075},"labels":[],"label_agreement":null},{"id":"W2083049703","doi":"10.1128/aem.03609-13","title":"Carriage of Clostridium difficile by Wild Urban Norway Rats (Rattus norvegicus) and Black Rats (Rattus rattus)","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph; BC Centre for Disease Control; Ministry of Agriculture; University of British Columbia","funders":"Canadian Institutes of Health Research; British Columbia Centre for Disease Control; University of British Columbia","keywords":"Clostridium difficile; Carriage; Ribotyping; Biology; Microbiology; Clostridium difficile toxin A; Clostridium; Odds ratio; Colonization; Veterinary medicine; Bacteria; Polymerase chain reaction; Medicine; Antibiotics; Internal medicine; Pathology; Gene","score_opus":0.00602391065699381,"score_gpt":0.20066303964419627,"score_spread":0.19463912898720245,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083049703","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9925539,0.0022982662,0.00000873995,0.00063961715,0.0000986598,0.0012584643,0.000559953,0.000033556546,0.0025488483],"genre_scores_gemma":[0.99482197,0.0019805671,0.00005977464,0.00043601464,0.00018430216,0.00009129731,0.0008545315,0.00006372282,0.0015078054],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974145,0.000081300495,0.0006212717,0.00087732164,0.0001788029,0.00082675554],"domain_scores_gemma":[0.9987247,0.00015487806,0.00017696172,0.0004997477,0.000020530377,0.00042317904],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00015157986,0.00052803213,0.0008626935,0.00013864835,0.00018076078,0.000038241007,0.0001846023,0.00043194287,0.0013335618],"category_scores_gemma":[0.000014396082,0.00045518653,0.00012307648,0.00015202565,0.0013842997,0.00007129083,0.00029607202,0.000517687,0.00040724254],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021670513,0.0004426584,0.0030356115,0.00011117517,0.00013377763,0.000015529067,0.00024017516,0.0000025677402,0.96749294,0.000036094705,0.026574349,0.0016984274],"study_design_scores_gemma":[0.0027926178,0.000740984,0.0027316597,0.000035359648,0.00012793405,0.00013604993,0.0010347917,0.000040517025,0.9739855,0.000018836623,0.017891122,0.00046465863],"about_ca_topic_score_codex":0.00019598918,"about_ca_topic_score_gemma":0.000009407903,"teacher_disagreement_score":0.008683228,"about_ca_system_score_codex":0.00013789913,"about_ca_system_score_gemma":0.000051949173,"threshold_uncertainty_score":0.99979},"labels":[],"label_agreement":null},{"id":"W2083426949","doi":"10.1128/aem.03698-12","title":"Kinetics of Ozone Inactivation of Infectious Prion Protein","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Prion Diseases and Protein Misfolding","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency; Provincial Laboratory of Public Health; University of Alberta","funders":"","keywords":"Ozone; Kinetics; Chemistry; Phosphate buffered saline; Bioassay; In vitro; Scrapie; Microbiology; Biochemistry; Prion protein; Chromatography; Biology","score_opus":0.002188193878226031,"score_gpt":0.16281161592610463,"score_spread":0.1606234220478786,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083426949","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99832064,0.00075221376,0.0004287562,0.000016596303,0.000012249608,0.0003123293,0.000019802685,0.000002581673,0.00013483825],"genre_scores_gemma":[0.9989683,0.0003910254,0.00035801553,0.00003992334,0.00001936609,0.00003415406,0.00016038863,0.0000075805024,0.000021215696],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99958426,0.000015804835,0.0001458079,0.0001450674,0.000017900205,0.000091187474],"domain_scores_gemma":[0.99976164,0.000004024937,0.00009787493,0.00010690545,0.0000041104095,0.000025438667],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000023573051,0.0000782943,0.00010372225,0.000020525402,0.000015764052,0.0000019900283,0.000045043304,0.00009907682,0.000059636044],"category_scores_gemma":[0.0000040868085,0.0000735797,0.000025358373,0.000018464865,0.00013147804,0.0000020426,0.00008583113,0.000031256008,0.000003950112],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022737739,0.00007605486,0.0015798262,0.00002165066,0.000018354534,4.2747228e-8,0.000015580847,0.000007561337,0.9851216,0.00006924329,0.00002549155,0.013041861],"study_design_scores_gemma":[0.0003582921,0.00025182194,0.0075042387,0.0000055899513,0.0000067213678,0.0000050053354,0.000054722972,0.0000021231579,0.9900948,0.00017370719,0.0014665698,0.000076419776],"about_ca_topic_score_codex":0.000019104344,"about_ca_topic_score_gemma":8.396412e-7,"teacher_disagreement_score":0.012965442,"about_ca_system_score_codex":0.000007000473,"about_ca_system_score_gemma":0.0000028521386,"threshold_uncertainty_score":0.3000493},"labels":[],"label_agreement":null},{"id":"W2083521478","doi":"10.1128/aem.02480-07","title":"Phylogenetic Diversity of Sequences of Cyanophage Photosynthetic Gene <i>psbA</i> in Marine and Freshwaters","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":95,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"JST-Mirai Program; Natural Sciences and Engineering Research Council of Canada","keywords":"Prochlorococcus; Biology; Synechococcus; Phylogenetic tree; Cyanobacteria; Phylogenetic diversity; Phylogenetics; Genetic diversity; Gene; Botany; Genetics; Bacteria; Population","score_opus":0.005447555178791552,"score_gpt":0.16028167953018133,"score_spread":0.15483412435138977,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083521478","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99929935,0.00007995864,0.0000059387417,0.000012722889,0.000024293739,0.00012205818,0.000090998736,0.0000041702597,0.00036048473],"genre_scores_gemma":[0.99864125,0.00062308914,0.0005842189,0.00006821018,0.0000035022333,0.000003821568,0.000030371362,0.000005770502,0.00003978493],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99938977,0.00001995237,0.00017954157,0.00023241455,0.000025404457,0.00015292899],"domain_scores_gemma":[0.99977106,0.000020087129,0.000075000076,0.0000963004,4.5159996e-7,0.000037101207],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000041242776,0.00011241629,0.0001949636,0.000029299508,0.00007848864,0.0000013075958,0.00008823078,0.00006689366,0.0005625527],"category_scores_gemma":[6.473076e-7,0.00010429453,0.000024356372,0.00003538801,0.000972519,0.000032217275,0.0006171063,0.00006524094,0.000014501345],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002372175,0.00007764965,0.09136027,0.0000062219046,0.0000072981193,0.000005121622,0.00039315794,0.000019040846,0.907374,0.000001689983,0.0000111711315,0.0007206217],"study_design_scores_gemma":[0.00034574515,0.00006738513,0.2482223,0.0000030803917,0.000010354702,0.00012384003,0.00011049702,0.000004260224,0.7507918,0.000022610682,0.00020603274,0.00009207147],"about_ca_topic_score_codex":0.00084357604,"about_ca_topic_score_gemma":0.000119634475,"teacher_disagreement_score":0.15686204,"about_ca_system_score_codex":0.000031185442,"about_ca_system_score_gemma":0.0000016982619,"threshold_uncertainty_score":0.61595577},"labels":[],"label_agreement":null},{"id":"W2083542048","doi":"10.1128/aem.03656-14","title":"Global Transcriptional Response of Clostridium difficile Carrying the ϕCD38-2 Prophage","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Prophage; Biology; Lysogen; Lysogenic cycle; Gene; Genetics; Transcriptome; Microbiology; Gene expression; Escherichia coli; Bacteriophage","score_opus":0.00820156721615828,"score_gpt":0.22114094665072404,"score_spread":0.21293937943456576,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083542048","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969903,0.0005410114,0.00006713474,0.00067803095,0.00006021798,0.00041259333,0.00021577721,0.000018744944,0.0010161715],"genre_scores_gemma":[0.99907213,0.00012098194,0.000086941756,0.00026973092,0.000097432545,0.000027868058,0.00014564283,0.000014971889,0.00016427909],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988367,0.00009868196,0.0002803613,0.00033399797,0.000116321105,0.00033395138],"domain_scores_gemma":[0.9994266,0.00013417302,0.000062449755,0.00026961035,0.0000067476813,0.000100442616],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032134872,0.00018645839,0.0003064529,0.00004118464,0.00013630459,0.000008210989,0.00012080135,0.00014563385,0.0001891977],"category_scores_gemma":[0.00001989533,0.00012962452,0.00009452067,0.000095936404,0.0006526313,0.0000142041645,0.00010126362,0.00018520828,0.000033737913],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013686552,0.00018001573,0.0015025799,0.00003267985,0.000049620903,0.000004175149,0.00009622404,0.0000066379966,0.99320126,0.0005307863,0.0002474506,0.0027799122],"study_design_scores_gemma":[0.0030308268,0.0008196489,0.029345814,0.000023102266,0.000119917255,0.00042917972,0.000645572,0.00007008413,0.94554925,0.00008860181,0.01964291,0.00023507513],"about_ca_topic_score_codex":0.000022911081,"about_ca_topic_score_gemma":0.0000021652163,"teacher_disagreement_score":0.04765199,"about_ca_system_score_codex":0.00010577376,"about_ca_system_score_gemma":0.00003976689,"threshold_uncertainty_score":0.5285934},"labels":[],"label_agreement":null},{"id":"W2084231066","doi":"10.1128/aem.00685-14","title":"Elucidation of the Molecular Basis for Arabinoxylan-Debranching Activity of a Thermostable Family GH62 α-<scp>l</scp>-Arabinofuranosidase from Streptomyces thermoviolaceus","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Argonne National Laboratory; University of Toronto; Tekes","keywords":"Arabinoxylan; Arabinose; Xylan; Chemistry; Stereochemistry; Schizophyllum commune; Cleave; Hydrolase; Biochemistry; Enzyme; Xylose; Fermentation","score_opus":0.003663319767013397,"score_gpt":0.15563520054404278,"score_spread":0.1519718807770294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084231066","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967636,0.00034416062,0.0019002506,0.000024523057,0.00011665003,0.00028719226,0.00016119138,0.000021175063,0.00038124024],"genre_scores_gemma":[0.9994953,0.00009390763,0.00021387015,0.000065977714,0.00002350836,0.000015566411,0.000061725426,0.000015272604,0.000014821702],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994371,0.000036456946,0.00014990765,0.00020348848,0.000032896205,0.00014016978],"domain_scores_gemma":[0.99961066,0.00009422483,0.000082207014,0.00018731788,0.000002605908,0.00002299411],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008896543,0.00013502117,0.00018651513,0.00002487894,0.000052687,0.0000046207547,0.00010357091,0.00012500004,0.0000129259],"category_scores_gemma":[0.000006497192,0.00010088615,0.000059896647,0.000033970733,0.00014356698,0.000033494944,0.000050285507,0.00008419606,0.000002759026],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016017744,0.000034302815,0.0006853092,0.00005178454,0.0000428786,2.88659e-8,0.00017415055,0.00019055272,0.99262065,0.00004252249,0.000052783784,0.0060889996],"study_design_scores_gemma":[0.00048724053,0.0000369512,0.011111202,0.000010419433,0.000030166048,0.0000012741092,0.0002614564,0.0004790078,0.98461735,0.00015132129,0.002752944,0.000060673137],"about_ca_topic_score_codex":0.00002834843,"about_ca_topic_score_gemma":9.593207e-7,"teacher_disagreement_score":0.010425893,"about_ca_system_score_codex":0.00002072715,"about_ca_system_score_gemma":0.0000029973887,"threshold_uncertainty_score":0.41140178},"labels":[],"label_agreement":null},{"id":"W2084436601","doi":"10.1128/aem.01545-10","title":"Distribution of Antimicrobial Resistance and Virulence Genes in<i>Enterococcus</i>spp. and Characterization of Isolates from Broiler Chickens","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":122,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Agriculture; Government of British Columbia; Biotechnology Research Institute; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Enterococcus faecalis; Biology; Virulence; Microbiology; Tetracycline; Antibiotic resistance; Antibiotics; Enterococcus faecium; Enterococcus; Bacitracin; Gene; Genetics; Escherichia coli","score_opus":0.003471944125681279,"score_gpt":0.1866578653803839,"score_spread":0.18318592125470262,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084436601","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981334,0.00027315094,0.00008237973,0.00008013279,0.00004932008,0.00027533635,0.0010740531,0.0000065484396,0.000025656429],"genre_scores_gemma":[0.9968594,0.0016320114,0.00036516399,0.00009792213,0.000025552337,0.000006150674,0.0009793015,0.000012388839,0.000022155706],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99914646,0.000016353051,0.0003159515,0.00032738733,0.00002635424,0.00016747578],"domain_scores_gemma":[0.99960715,0.000038945615,0.00016023651,0.0001413882,0.0000056904532,0.00004661783],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000059948,0.00015783004,0.00035353607,0.00004236709,0.00003892765,0.000005038582,0.00004700123,0.00017303858,0.00002675198],"category_scores_gemma":[0.0000047829235,0.00014960949,0.000023247203,0.000044206274,0.00078283437,0.000043636108,0.00008958984,0.00015750524,0.0000016862207],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029515126,0.000084609404,0.103558056,0.00007472787,0.000018229526,0.0000013180339,0.0001263583,7.494634e-8,0.89506364,0.000053657295,0.00001729656,0.0007068738],"study_design_scores_gemma":[0.0009006408,0.00003649931,0.45104298,0.00006128018,0.000028455486,0.000015024387,0.000044543605,0.0000030180825,0.54666805,0.000032643136,0.0010669326,0.00009991777],"about_ca_topic_score_codex":0.000034051358,"about_ca_topic_score_gemma":0.000056024623,"teacher_disagreement_score":0.3483956,"about_ca_system_score_codex":0.000013763925,"about_ca_system_score_gemma":0.000008369255,"threshold_uncertainty_score":0.61008984},"labels":[],"label_agreement":null},{"id":"W2084599172","doi":"10.1128/aem.71.11.6753-6761.2005","title":"Antimicrobial Resistance and Virulence Genes of <i>Escherichia coli</i> Isolates from Swine in Ontario","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":337,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; University of Guelph","funders":"","keywords":"Virulence; Microbiology; Escherichia coli; Biology; Tetracycline; Antibiotic resistance; Enterotoxigenic Escherichia coli; Antimicrobial; Streptomycin; Pathogenic Escherichia coli; Plasmid; Gene; Antibiotics; Enterotoxin; Genetics","score_opus":0.003356540200404485,"score_gpt":0.1680335911111431,"score_spread":0.16467705091073861,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084599172","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99796677,0.0014890599,0.0000408667,0.0000573874,0.000032507516,0.00012695318,0.000098939534,0.0000030102553,0.00018450833],"genre_scores_gemma":[0.99491125,0.0013086983,0.0029772187,0.0002830313,0.00004295108,0.0000034959728,0.00025354594,0.000013166356,0.00020666834],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991633,0.000020478137,0.00023062224,0.0003803152,0.000016353564,0.00018888777],"domain_scores_gemma":[0.99970675,0.000011901216,0.00008278951,0.00016248539,0.0000018669044,0.00003422856],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000049740265,0.0001591433,0.0002126581,0.00001874034,0.000033653472,0.0000061153005,0.00009666028,0.00016668916,0.000039479448],"category_scores_gemma":[0.0000014799077,0.00015935274,0.000021939928,0.000018212526,0.00039038123,0.0000044146855,0.0001336959,0.00008417893,0.0000041996486],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017463551,0.000054223878,0.09643845,0.000007665618,0.000018911423,9.770131e-7,0.000076347605,0.000004215042,0.90280914,0.000017095548,0.00008586621,0.0003124837],"study_design_scores_gemma":[0.00085849717,0.000048934075,0.17564946,0.000017351944,0.000013150402,0.000008991575,0.000066532775,0.0000014956,0.7964714,0.000031332278,0.026616098,0.00021676144],"about_ca_topic_score_codex":0.00061313115,"about_ca_topic_score_gemma":0.011475406,"teacher_disagreement_score":0.106337726,"about_ca_system_score_codex":0.000025738069,"about_ca_system_score_gemma":0.000016448725,"threshold_uncertainty_score":0.64982164},"labels":[],"label_agreement":null},{"id":"W2084706570","doi":"10.1128/aem.02841-09","title":"Heterologous Expression of the Oxytetracycline Biosynthetic Pathway in <i>Myxococcus xanthus</i>","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Myxococcus xanthus; Oxytetracycline; Heterologous; Heterologous expression; Microbiology; Biology; Computational biology; Chemistry; Biochemistry; Antibiotics; Gene; Recombinant DNA","score_opus":0.003497069490149182,"score_gpt":0.1768960496403011,"score_spread":0.1733989801501519,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084706570","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99848396,0.00017963513,4.6955088e-7,0.00057161023,0.00016086364,0.00032711754,0.00012120423,0.000009075823,0.00014604644],"genre_scores_gemma":[0.9989119,0.000084474304,0.00020285582,0.00061394856,0.00005161935,0.000001881182,0.00006228248,0.00001204203,0.000058964404],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99919665,0.000025243566,0.00024427773,0.0002974664,0.000032273332,0.00020409322],"domain_scores_gemma":[0.9995622,0.00004130788,0.00008379359,0.00026884497,0.0000019500274,0.000041905332],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009444953,0.00014812523,0.00026287537,0.00004374654,0.000047978403,0.0000026662215,0.00010802777,0.00020831953,0.00013740134],"category_scores_gemma":[0.0000122994215,0.00008506624,0.000056416473,0.000051651663,0.00049217924,0.000013862367,0.00014786939,0.00036148718,0.000008718322],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008281896,0.0002284986,0.0040403595,0.000019464926,0.0000062272925,0.0000025614092,0.00005971036,2.7780743e-7,0.9902391,0.000016335458,0.000079734775,0.0052249357],"study_design_scores_gemma":[0.00061459484,0.000063890584,0.02001786,0.000020424837,0.000013164387,0.00015791913,0.000059764116,0.0000010703388,0.9699892,0.000032417858,0.008937137,0.00009258571],"about_ca_topic_score_codex":0.000012201901,"about_ca_topic_score_gemma":0.000023687033,"teacher_disagreement_score":0.020249905,"about_ca_system_score_codex":0.000012234263,"about_ca_system_score_gemma":0.000007729901,"threshold_uncertainty_score":0.34689006},"labels":[],"label_agreement":null},{"id":"W2084819217","doi":"10.1128/aem.00480-09","title":"Detection and Enumeration of<i>Clostridium difficile</i>Spores in Retail Beef and Pork","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":179,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; University of Guelph","funders":"Ministry of Agriculture, Food and Rural Affairs; Ontario Ministry of Agriculture, Food and Rural Affairs; Public Health Agency; Public Health Agency of Canada","keywords":"Spore; Clostridium difficile; Food science; Contamination; Clostridium; Clostridiaceae; Food contaminant; Biology; Microbiology; Veterinary medicine; Bacteria; Antibiotics; Medicine; Toxin; Ecology","score_opus":0.007209805225303655,"score_gpt":0.2100178389153933,"score_spread":0.20280803369008965,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084819217","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99739426,0.0015766402,0.000010289321,0.00031594248,0.00001806038,0.00030802595,0.000025619485,0.00001057268,0.00034059616],"genre_scores_gemma":[0.997582,0.0019910221,0.00006382003,0.00016354852,0.000041160925,0.000008024214,0.00009252339,0.0000090066105,0.000048904312],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991463,0.00002130144,0.00024213042,0.0003193062,0.0000526667,0.00021830905],"domain_scores_gemma":[0.9997139,0.000037277678,0.000052762807,0.00011278712,0.0000032345479,0.00008006394],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010297062,0.0001493386,0.00028482798,0.000104749335,0.000057154994,0.000007706265,0.000027405948,0.00016119248,0.000035412526],"category_scores_gemma":[0.0000074833683,0.0001362138,0.000022733275,0.00006894947,0.00024541316,0.00002535227,0.00005127322,0.00018884534,0.0000033301328],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025763587,0.00012611233,0.0033614994,0.000024450865,0.000012678059,0.000007439518,0.00012215704,0.000001067529,0.9596097,0.000053346677,0.000017533648,0.036406383],"study_design_scores_gemma":[0.0018444717,0.0006579931,0.06345794,0.00002132131,0.00003705552,0.00022977228,0.00037749406,0.000040956813,0.9319311,0.00007783973,0.0011766345,0.00014746406],"about_ca_topic_score_codex":0.000029832074,"about_ca_topic_score_gemma":0.000010058771,"teacher_disagreement_score":0.060096446,"about_ca_system_score_codex":0.00004652193,"about_ca_system_score_gemma":0.000010281961,"threshold_uncertainty_score":0.5554638},"labels":[],"label_agreement":null},{"id":"W2084928639","doi":"10.1128/aem.00870-13","title":"Occurrence of Waterborne Pathogens and Escherichia coli at Offshore Drinking Water Intakes in Lake Ontario","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta; Regional Municipality of Ottawa; Canadian Apheresis Group; Ontario Clean Water Agency; Agriculture and Agri-Food Canada; Institut National de la Recherche Scientifique; Environment and Climate Change Canada","funders":"Ministry of Environment","keywords":"Cryptosporidium; Cryptosporidium parvum; Water quality; Giardia; Biology; Waterborne diseases; Veterinary medicine; Raw water; Surface water; Fecal coliform; Environmental science; Microbiology; Feces; Environmental engineering; Ecology","score_opus":0.004849275313558379,"score_gpt":0.16859368477031486,"score_spread":0.16374440945675647,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084928639","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987917,0.0002205366,0.0000066751245,0.000027563485,0.000121731646,0.00023105557,0.0001606271,0.000008681477,0.00043144738],"genre_scores_gemma":[0.9985471,0.0001169224,0.000060309332,0.00010823231,0.0000047224985,0.00004171461,0.0009305647,0.000005206127,0.00018524252],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99914557,0.000036056837,0.00023554015,0.00026926713,0.0000077629265,0.00030580832],"domain_scores_gemma":[0.99975973,0.00005860457,0.000045543722,0.00011183858,0.0000028025108,0.00002149579],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00006659566,0.00016118912,0.00025715752,0.00005272304,0.00009433389,0.0000053028825,0.000056857432,0.0002110619,0.0015394145],"category_scores_gemma":[0.000002145828,0.00012225602,0.000022651098,0.000018858402,0.00051938934,0.000029634679,0.0001814576,0.0001665026,0.00025726695],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017228458,0.00007565373,0.21569474,0.0000061029386,0.000024781957,0.0000014970614,0.0007464899,0.0000024292547,0.7826798,0.00004597982,0.0001455549,0.00055973034],"study_design_scores_gemma":[0.0014117816,0.0001658588,0.44679865,0.000014875068,0.000037211106,0.00014954401,0.00040004164,9.750298e-7,0.5261991,0.00015011655,0.02437682,0.00029501552],"about_ca_topic_score_codex":0.00054268324,"about_ca_topic_score_gemma":0.0062838932,"teacher_disagreement_score":0.2564807,"about_ca_system_score_codex":0.00004973908,"about_ca_system_score_gemma":0.000006614323,"threshold_uncertainty_score":0.9993733},"labels":[],"label_agreement":null},{"id":"W2085566004","doi":"10.1128/aem.00684-06","title":"Cysteine Metabolism in <i>Legionella pneumophila</i> : Characterization of an <scp>l</scp> -Cystine-Utilizing Mutant","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Legionella pneumophila; Cysteine; Cystine; Mutant; Microbiology; Legionella; Metabolism; Biochemistry; Chemistry; Biology; Bacteria; Genetics; Enzyme; Gene","score_opus":0.004122682880017063,"score_gpt":0.18633350262495837,"score_spread":0.1822108197449413,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085566004","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986783,0.0003097174,0.00003303864,0.000027246806,0.000041936226,0.00020123018,0.00009463475,0.0000061088995,0.00060774497],"genre_scores_gemma":[0.99718404,0.00031057664,0.00006589463,0.00011693951,0.00013679813,0.00001815938,0.0020130943,0.000020820611,0.00013368946],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99898344,0.000043036747,0.00026413178,0.00038276313,0.000043026892,0.0002835847],"domain_scores_gemma":[0.99965817,0.000013456025,0.0000906421,0.0001843325,0.000004123173,0.000049261915],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000111570036,0.00016649107,0.00021474234,0.00006451194,0.000051054372,0.000007812307,0.00011791331,0.00017905682,0.0000024189721],"category_scores_gemma":[0.0000036641857,0.00015687675,0.000034625366,0.00005895962,0.00022597324,0.000005739743,0.0001343026,0.00009271802,0.000005535445],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025960651,0.00013726095,0.0018999553,0.000013455836,0.000010778459,0.000004781155,0.00004305447,0.000015240942,0.99737835,0.00013736293,0.000022121949,0.0003116667],"study_design_scores_gemma":[0.0008844534,0.000121060264,0.017790126,0.00000513053,0.000010023787,0.00007620051,0.00018198074,0.000031147923,0.96898544,0.00006086363,0.011764963,0.00008860699],"about_ca_topic_score_codex":0.000039923598,"about_ca_topic_score_gemma":0.000016585122,"teacher_disagreement_score":0.028392917,"about_ca_system_score_codex":0.000011773676,"about_ca_system_score_gemma":0.000013057298,"threshold_uncertainty_score":0.6397248},"labels":[],"label_agreement":null},{"id":"W2085696665","doi":"10.1128/aem.00572-15","title":"Mutational Analysis of the Antitoxin in the Lactococcal Type III Toxin-Antitoxin System AbiQ","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Antitoxin; Toxin; Microbiology; Biology","score_opus":0.0060935019145481086,"score_gpt":0.19037898423124977,"score_spread":0.18428548231670167,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085696665","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989844,0.00022387916,0.00002361532,0.00010495471,0.000108519605,0.0001899396,0.000077410674,0.0000027675615,0.0002845266],"genre_scores_gemma":[0.99928194,0.000045454428,0.00007295546,0.00019271899,0.00004542702,0.000011054041,0.00031056086,0.0000060724014,0.00003380962],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99931234,0.00006157364,0.00020815144,0.0002303323,0.00003864059,0.0001489504],"domain_scores_gemma":[0.99964267,0.000010526832,0.00008564139,0.00023634314,0.000005371765,0.000019421686],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017522735,0.00010954495,0.00017634049,0.000059339836,0.0000392925,0.000006418479,0.00022123956,0.00021914965,0.000009131856],"category_scores_gemma":[0.000005197162,0.00006786898,0.000049253045,0.00020811349,0.00030692088,0.0000010822107,0.00016830402,0.00008489288,0.000003854097],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054350472,0.000048493162,0.0057783285,0.0000033395613,0.00010423242,9.010341e-7,0.000070603004,0.00005892389,0.992889,0.0006749795,0.00012885091,0.00018803206],"study_design_scores_gemma":[0.0016612951,0.00037959445,0.08600901,0.000006945416,0.0003057966,0.00012663574,0.0024450356,0.000083246116,0.88383734,0.00008741239,0.024737822,0.0003198633],"about_ca_topic_score_codex":0.000022498118,"about_ca_topic_score_gemma":0.00004584323,"teacher_disagreement_score":0.10905162,"about_ca_system_score_codex":0.00001492828,"about_ca_system_score_gemma":0.000019324641,"threshold_uncertainty_score":0.27676168},"labels":[],"label_agreement":null},{"id":"W2085977949","doi":"10.1128/aem.03082-09","title":"Study of Matrix Additives for Sensitive Analysis of Lipid A by Matrix-Assisted Laser Desorption Ionization Mass Spectrometry","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Biological Sciences","funders":"National Natural Science Foundation of China","keywords":"Lipid A; Chemistry; Mass spectrometry; Matrix (chemical analysis); Matrix-assisted laser desorption/ionization; Desorption; Chromatography; Salmonella enterica; Sodium; Biochemistry; Escherichia coli; Bacteria; Biology; Organic chemistry","score_opus":0.0036881011883144956,"score_gpt":0.21485592871524334,"score_spread":0.21116782752692884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085977949","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963524,0.00014515335,0.001944121,0.000010336761,0.000051511346,0.00035970783,0.0010845279,0.0000034109753,0.000048876664],"genre_scores_gemma":[0.9954179,0.0002540441,0.0019926343,0.000017600327,0.000041655283,0.00003070589,0.002140666,0.000012711429,0.00009207885],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991954,0.000030542094,0.00025322018,0.00033549409,0.00003334876,0.0001519744],"domain_scores_gemma":[0.99957097,0.00003262201,0.00019628007,0.00015832459,0.000012293513,0.000029533363],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011225521,0.00014806798,0.0003531415,0.00014221703,0.000057579397,0.0000039998095,0.000063159794,0.00013873215,0.000035775043],"category_scores_gemma":[0.000010575204,0.00013753814,0.0000830307,0.0001624698,0.00016774733,0.0000024113638,0.00007482581,0.00006203189,7.062594e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014063386,0.00031662293,0.005099468,0.000008849754,0.0009678878,1.6814262e-7,0.00007647698,0.000012945923,0.99299484,0.00008961589,0.00011065569,0.00018182151],"study_design_scores_gemma":[0.0012476104,0.00066089764,0.02902861,0.0000010416036,0.0006085076,0.000005229811,0.0017580136,0.000021120373,0.9655599,0.000020117872,0.0009145913,0.00017435994],"about_ca_topic_score_codex":0.000006981452,"about_ca_topic_score_gemma":0.000024383984,"teacher_disagreement_score":0.027434953,"about_ca_system_score_codex":0.000008444929,"about_ca_system_score_gemma":0.0000048286734,"threshold_uncertainty_score":0.56086427},"labels":[],"label_agreement":null},{"id":"W2086473052","doi":"10.1128/aem.67.11.5084-5093.2001","title":"Identification of Disulfides from the Biodegradation of Dibenzothiophene","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Toxic Organic Pollutants Impact","field":"Environmental Science","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; University of Alberta","keywords":"Dibenzothiophene; Biodegradation; Identification (biology); Chemistry; Environmental chemistry; Biology; Organic chemistry; Ecology; Sulfur","score_opus":0.004772717001131272,"score_gpt":0.17989891587914533,"score_spread":0.17512619887801406,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086473052","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987399,0.00013761054,0.00024590973,0.00015219366,0.00003657877,0.000120966906,0.00032931074,0.0000061739443,0.00023136416],"genre_scores_gemma":[0.99947137,0.00022835226,0.000110143876,0.00009021912,0.000012881562,0.0000025971647,0.000035778823,0.000007335556,0.000041310966],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99935675,0.00002724086,0.0002551261,0.00018995428,0.000048380236,0.0001225525],"domain_scores_gemma":[0.99953353,0.000067899586,0.00016451637,0.00020794959,1.4809696e-7,0.000025945803],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010847681,0.00009165741,0.00012487327,0.00001004321,0.000051607298,0.0000034075003,0.00015172355,0.00006206267,0.00083790853],"category_scores_gemma":[0.000006114491,0.00006475788,0.000022940154,0.000059110986,0.0005818617,0.00004448377,0.0001207821,0.000049107184,0.00006452553],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001651486,0.000044906094,0.019504508,5.4841723e-7,0.000011563738,1.5882623e-7,0.00022960719,0.0000056219956,0.9557411,0.000026283431,0.00005203905,0.024367169],"study_design_scores_gemma":[0.0002291613,0.000024571029,0.49408576,0.000001875477,0.000018449125,0.00000953356,0.00029424398,0.000015944172,0.50376695,0.00058316265,0.00089883007,0.000071504786],"about_ca_topic_score_codex":0.000103742976,"about_ca_topic_score_gemma":0.000021868702,"teacher_disagreement_score":0.47458127,"about_ca_system_score_codex":0.00003686163,"about_ca_system_score_gemma":0.0000018544109,"threshold_uncertainty_score":0.9174511},"labels":[],"label_agreement":null},{"id":"W2086882879","doi":"10.1128/aem.00906-12","title":"Identification and Mechanism of Evolution of New Alleles Coding for the AIDA-I Autotransporter of Porcine Pathogenic Escherichia coli","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique; Armand Frappier Museum; Université de Montréal","funders":"Canadian Institutes of Health Research","keywords":"Biology; Virulence; Genetics; Escherichia coli; Gene; Pathogenic Escherichia coli; Operon; Bacterial adhesin; Allele; Plasmid; Bacterial outer membrane; Coding region; Microbiology; Virulence factor","score_opus":0.007639292371635118,"score_gpt":0.21089740215770422,"score_spread":0.2032581097860691,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086882879","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9876726,0.0033937325,0.008486763,0.0000332058,0.000024438956,0.00028826852,0.000085230895,0.0000012969385,0.000014411592],"genre_scores_gemma":[0.99808085,0.0011015438,0.00060983485,0.000016087215,0.000026736468,0.000023645482,0.00007821444,0.0000072613902,0.000055807817],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99952364,0.000015233951,0.00018047911,0.00012725366,0.000024503817,0.00012891267],"domain_scores_gemma":[0.99972486,0.000022331453,0.00011521742,0.00010608598,0.000005406641,0.000026107362],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001630092,0.00007821727,0.00013739105,0.000014614155,0.000040576688,0.0000010106622,0.00005829791,0.00007804869,0.0000051598076],"category_scores_gemma":[0.0000056884005,0.000060271486,0.0000323322,0.000019088127,0.00023527222,0.0000026643572,0.00006893726,0.000030643503,1.8519081e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007706591,0.00004311296,0.0037191976,0.000040693976,0.00008021519,1.211683e-8,0.00014277716,0.000002429636,0.9940195,0.001323038,0.00003447232,0.0005174897],"study_design_scores_gemma":[0.00054232695,0.00015289761,0.06832269,0.000004235361,0.000057600846,0.0000024625217,0.0005331542,0.00002169084,0.9293843,0.00014965166,0.00075838657,0.00007062337],"about_ca_topic_score_codex":0.0000138594805,"about_ca_topic_score_gemma":0.0000051425905,"teacher_disagreement_score":0.06463521,"about_ca_system_score_codex":0.0000073284273,"about_ca_system_score_gemma":0.0000103448,"threshold_uncertainty_score":0.24577999},"labels":[],"label_agreement":null},{"id":"W2089322402","doi":"10.1128/aem.00667-09","title":"In Situ Phylogenetic Structure and Diversity of Wild <i>Bradyrhizobium</i> Communities","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; National Science Foundation","keywords":"Bradyrhizobium; Biology; Lotus; Phylogenetic tree; Bacteria; Phylogenetic diversity; Host (biology); Botany; Symbiotic bacteria; Population; Root nodule; Symbiosis; Phylogenetics; Bradyrhizobium japonicum; Ecology; Rhizobiaceae; Genetics; Gene","score_opus":0.005155528704243703,"score_gpt":0.15493204895193935,"score_spread":0.14977652024769564,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2089322402","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991658,0.00032331428,5.177421e-8,0.0001869337,0.000012885848,0.00009118702,0.00010397391,0.0000059255153,0.00010994283],"genre_scores_gemma":[0.9990624,0.00006852237,0.000045320336,0.00070314173,0.000015345506,8.379438e-7,0.00009663298,4.8669153e-7,0.0000072742732],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99956423,0.00002953545,0.00010197691,0.00013835538,0.000021458833,0.0001444692],"domain_scores_gemma":[0.9998524,0.000041100957,0.000040221206,0.000036718357,8.68412e-7,0.0000286647],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003497313,0.00010200854,0.00015581769,0.0000096940075,0.0001019992,0.0000043183877,0.00010317949,0.0000995569,0.00006151121],"category_scores_gemma":[4.604181e-7,0.00004979145,0.00001671259,0.00003705732,0.00022276427,0.000024726625,0.00020132307,0.00008603014,0.0000017119437],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014851414,0.000036486843,0.043452132,0.0000019785123,0.000005024516,5.9780183e-7,0.00026356566,7.612399e-8,0.9537775,0.00006260793,0.000020654403,0.0023645211],"study_design_scores_gemma":[0.00030297303,0.00019539011,0.57844037,0.0000042011484,0.000011187114,0.0000289637,0.00076492265,3.4035952e-7,0.41882426,0.0010814108,0.00019902427,0.0001469865],"about_ca_topic_score_codex":0.00011879652,"about_ca_topic_score_gemma":0.0001593166,"teacher_disagreement_score":0.5349882,"about_ca_system_score_codex":0.000011281594,"about_ca_system_score_gemma":5.905648e-7,"threshold_uncertainty_score":0.20304364},"labels":[],"label_agreement":null},{"id":"W2089719624","doi":"10.1128/aem.02250-06","title":"Biochemical and Ecological Control of Geosmin and 2-Methylisoborneol in Source Waters","year":2007,"lang":"en","type":"review","venue":"Applied and Environmental Microbiology","topic":"Aquatic Ecosystems and Phytoplankton Dynamics","field":"Environmental Science","cited_by":457,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Environment and Climate Change Canada","funders":"","keywords":"Geosmin; Odor; Water source; Ecology; Environmental science; Taste; Environmental chemistry; Biology; Chemistry; Food science; Water resource management","score_opus":0.007908369491712232,"score_gpt":0.21308656053213046,"score_spread":0.20517819104041823,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2089719624","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.26367286,0.73462933,0.00013546263,0.0000095212,0.00004085946,0.0008872965,0.00024366268,0.000009330794,0.0003716808],"genre_scores_gemma":[0.26513323,0.73430544,0.0001984666,0.000076428594,0.000015573847,0.00003308589,0.00017143357,0.000020352098,0.000045982524],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.998495,0.00007129438,0.00052362663,0.00054332503,0.000041382773,0.00032539637],"domain_scores_gemma":[0.9993312,0.00023231459,0.00019586194,0.00014166544,2.8832525e-7,0.00009866893],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00029504971,0.00033454128,0.0010802168,0.000054693002,0.000040748866,0.0000066357366,0.00011603397,0.0005184461,0.00012792648],"category_scores_gemma":[0.0000038619473,0.00025518454,0.000058142232,0.00004826833,0.0008667663,0.000017326653,0.00024536974,0.00027070995,0.000026983082],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000056694167,0.00030373168,0.014925621,0.0025471833,0.00013835508,0.000023896771,0.00030508635,0.000011455984,0.035543643,0.00023369592,0.00014669742,0.94576395],"study_design_scores_gemma":[0.0014877135,0.00020546773,0.0030646299,0.00039911675,0.00025022659,0.00047578863,0.00016741265,0.00007318366,0.00011719795,0.00010353261,0.9928698,0.0007859401],"about_ca_topic_score_codex":0.000050014365,"about_ca_topic_score_gemma":0.000015350624,"teacher_disagreement_score":0.9927231,"about_ca_system_score_codex":0.000082884035,"about_ca_system_score_gemma":0.0000040061946,"threshold_uncertainty_score":0.99999005},"labels":[],"label_agreement":null},{"id":"W2090775613","doi":"10.1128/aem.69.10.6316-6320.2003","title":"Comparison of <i>Campylobacter</i> Isolates from Poultry and Humans: Association between In Vitro Virulence Properties, Biotypes, and Pulsed-Field Gel Electrophoresis Clusters","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Health Canada","keywords":"Vero cell; Virulence; Biology; Campylobacter jejuni; Microbiology; Cytotoxic T cell; Campylobacter; Pulsed-field gel electrophoresis; In vitro; Gel electrophoresis; Cytotoxicity; Bacteria; Virology; Genotype; Molecular biology; Gene; Genetics","score_opus":0.010354636094565526,"score_gpt":0.19338988054379233,"score_spread":0.1830352444492268,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2090775613","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99709505,0.002372225,0.0000022664233,0.00016922926,0.000024996629,0.00015950864,0.00010274683,0.00000860307,0.00006539331],"genre_scores_gemma":[0.99822927,0.001098197,0.000060781018,0.00035880617,0.000029758348,0.000008667031,0.00020043696,0.0000017114724,0.00001235264],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988882,0.00012901981,0.00030325048,0.00037531604,0.00002798152,0.0002762485],"domain_scores_gemma":[0.99941933,0.00033663007,0.00014473332,0.000044269687,0.0000022707986,0.000052789605],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016444012,0.00016531322,0.00039343588,0.000014641145,0.000079768244,0.000011875457,0.00007620631,0.00027123833,0.000033144264],"category_scores_gemma":[0.000017194541,0.000084979176,0.000024417499,0.000048641963,0.00013615639,0.000035474706,0.000069786634,0.00015611049,0.0000032729552],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004143833,0.000027581493,0.4275431,0.0000029313978,0.000016062237,1.2751981e-7,0.0000631091,1.6179865e-7,0.56889874,0.0000053114372,0.000017553608,0.0033838802],"study_design_scores_gemma":[0.00045384574,0.00026982152,0.6094695,0.000012484453,0.00004153991,0.000004708259,0.0009471266,0.0000062819754,0.385956,0.00032012683,0.0022620552,0.00025651048],"about_ca_topic_score_codex":0.00035879074,"about_ca_topic_score_gemma":0.00005905734,"teacher_disagreement_score":0.18294273,"about_ca_system_score_codex":0.00003901868,"about_ca_system_score_gemma":0.000002310582,"threshold_uncertainty_score":0.346535},"labels":[],"label_agreement":null},{"id":"W2091846570","doi":"10.1128/aem.71.3.1522-1530.2005","title":"In Vitro Reconstitution of an NADPH-Dependent Superoxide Reduction Pathway from <i>Pyrococcus furiosus</i>","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Electrochemical sensors and biosensors","field":"Engineering","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; University of Waterloo; U.S. Department of Energy","keywords":"Pyrococcus furiosus; Rubredoxin; NAD+ kinase; Flavin mononucleotide; Oxidoreductase; Biochemistry; Superoxide; Flavin adenine dinucleotide; Chemistry; Ferredoxin; Flavin group; Biology; Enzyme; Cofactor; Gene","score_opus":0.002298692937722358,"score_gpt":0.1463613549559525,"score_spread":0.14406266201823015,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2091846570","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99907964,0.00031662983,0.000014482017,0.000030155848,0.000057989375,0.00010792485,0.000104040446,0.00002724868,0.00026186282],"genre_scores_gemma":[0.99872375,0.00022514138,0.0006041098,0.00006066459,0.000085595006,0.0000074146524,0.00026871604,0.000010954336,0.000013661563],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99936867,0.000012218616,0.00020316459,0.00020592561,0.000021750817,0.00018827624],"domain_scores_gemma":[0.9998298,0.00001123885,0.000022928123,0.00009237084,7.427417e-7,0.000042897882],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000035470162,0.00012578476,0.00017081873,0.00003415591,0.000021282644,0.0000033443066,0.00005005495,0.00014808385,0.00005271454],"category_scores_gemma":[5.217203e-7,0.00012179805,0.000020945528,0.000025952173,0.00011621944,0.00005619429,0.00001926022,0.00012530155,0.00001743093],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004639044,0.00005473382,0.000026028738,0.0000039530128,0.000010238944,0.0000013024413,0.0000849933,0.00023535536,0.9904831,0.000019421064,0.000021128937,0.009013342],"study_design_scores_gemma":[0.00044248486,0.000024575114,0.00016041058,0.0000028117936,0.000005953645,0.000037302067,0.000119313896,0.000088565794,0.9962493,0.00007825733,0.002656734,0.00013425747],"about_ca_topic_score_codex":0.000045291406,"about_ca_topic_score_gemma":0.000022364049,"teacher_disagreement_score":0.008879084,"about_ca_system_score_codex":0.00008467967,"about_ca_system_score_gemma":0.0000023095347,"threshold_uncertainty_score":0.49667802},"labels":[],"label_agreement":null},{"id":"W2092851729","doi":"10.1128/aem.01782-14","title":"Exopolysaccharides Synthesized by Lactobacillus reuteri Protect against Enterotoxigenic Escherichia coli in Piglets","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"China Scholarship Council; Alberta Livestock and Meat Agency","keywords":"Enterotoxigenic Escherichia coli; Fimbria; Microbiology; Biology; Bacterial adhesin; Lactobacillus reuteri; Intestinal mucosa; Bacteria; Escherichia coli; Lactobacillus; Enterotoxin; Gene; Medicine; Biochemistry","score_opus":0.004409367391424111,"score_gpt":0.15305616571587527,"score_spread":0.14864679832445116,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092851729","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985416,0.00016501543,0.00000895845,0.00020897404,0.000043193635,0.00046531102,0.000114697425,0.000028496837,0.0004237416],"genre_scores_gemma":[0.99858135,0.00023293182,0.000065611464,0.0007060098,0.000036962072,0.00007245481,0.00024978217,0.0000026060916,0.00005229895],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988843,0.000070742346,0.00023017824,0.0004158568,0.000035737998,0.00036317582],"domain_scores_gemma":[0.99971926,0.000057627818,0.00007631999,0.00006915449,0.000001144009,0.00007650912],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015603566,0.00020856524,0.00025636278,0.00001247552,0.00011103942,0.000024446674,0.0001761648,0.00018383545,0.00012810582],"category_scores_gemma":[0.0000043072487,0.00009975107,0.000044174445,0.000060482016,0.0001831163,0.000030416088,0.00014989378,0.00015755193,0.00004064277],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005753711,0.000114975366,0.0012645179,0.0000041197045,0.000012107995,8.957674e-7,0.00003243193,4.3800605e-7,0.9844184,0.00003384901,0.00005105392,0.0140097],"study_design_scores_gemma":[0.0015670324,0.0009120674,0.041585494,0.000034460445,0.000021208696,0.000021567834,0.0004096419,0.00006789582,0.8845454,0.0003895057,0.069578044,0.000867669],"about_ca_topic_score_codex":0.000032371452,"about_ca_topic_score_gemma":0.00003633033,"teacher_disagreement_score":0.09987296,"about_ca_system_score_codex":0.000041268475,"about_ca_system_score_gemma":0.0000015831156,"threshold_uncertainty_score":0.4067731},"labels":[],"label_agreement":null},{"id":"W2092920656","doi":"10.1128/aem.00350-14","title":"Stress Response and Adaptation of Listeria monocytogenes 08-5923 Exposed to a Sublethal Dose of Carnocyclin A","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Alberta Innovates; Alberta Livestock and Meat Agency; Agilent Technologies","keywords":"Listeria monocytogenes; Biology; Downregulation and upregulation; Cell division; Microbiology; Microarray analysis techniques; Cell biology; Gene expression; Gene; Cell; Bacteria; Biochemistry; Genetics","score_opus":0.027964723560340653,"score_gpt":0.24605787388474765,"score_spread":0.218093150324407,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092920656","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99855185,0.00036453592,0.00046447926,0.000029442792,0.000055739765,0.00023678086,0.00023926285,0.0000037543036,0.000054183412],"genre_scores_gemma":[0.9974072,0.00012660353,0.0019798188,0.00011927619,0.000036816997,0.000023792143,0.0002592755,0.000018323259,0.00002887667],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902964,0.00011251767,0.0003033671,0.00036014392,0.00002974183,0.00016461175],"domain_scores_gemma":[0.99950427,0.000036681988,0.00013120215,0.00025709628,0.0000051981788,0.0000655674],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020309343,0.00016287806,0.00024609643,0.000042552725,0.00003595556,0.000004257565,0.00010859802,0.00017264523,0.000008803096],"category_scores_gemma":[0.000014213269,0.00016009063,0.00003479547,0.00002557239,0.00028281022,0.0000025571474,0.0003200084,0.000035216028,0.0000020032403],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022153324,0.000052501346,0.0041746087,0.00002775884,0.000046463825,3.9455853e-7,0.0002976093,0.00006654029,0.9880866,0.000033408025,0.000008190952,0.0049905935],"study_design_scores_gemma":[0.0011954159,0.00077248097,0.014158205,0.000008569667,0.000023823513,0.00002647924,0.00051980687,0.000020049478,0.9793187,0.000017804876,0.0037618196,0.0001768968],"about_ca_topic_score_codex":0.000015900507,"about_ca_topic_score_gemma":0.000018952753,"teacher_disagreement_score":0.009983596,"about_ca_system_score_codex":0.00001136187,"about_ca_system_score_gemma":0.000010870928,"threshold_uncertainty_score":0.6528306},"labels":[],"label_agreement":null},{"id":"W2093389098","doi":"10.1128/aem.71.5.2347-2354.2005","title":"Construction, Analysis, and β-Glucanase Screening of a Bacterial Artificial Chromosome Library from the Large-Bowel Microbiota of Mice","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"University of Otago","keywords":"Bacterial artificial chromosome; Biology; Genomic library; Genetics; Escherichia coli; Insert (composites); genomic DNA; Open reading frame; Metagenomics; Gene; clone (Java method); Library; Chromosome; Glucanase; Microbiology; Molecular biology; 16S ribosomal RNA; Peptide sequence; Genome","score_opus":0.004377441935599774,"score_gpt":0.15327804651997787,"score_spread":0.1489006045843781,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2093389098","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968276,0.00039168584,0.000016227,0.00037045227,0.000028846927,0.00011999007,0.0021944887,0.0000069563807,0.00004372094],"genre_scores_gemma":[0.9973795,0.00021435578,0.00070836913,0.00017583137,0.000115326395,0.0000022890995,0.0013960665,0.0000012595098,0.000007004702],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992802,0.000035312252,0.00025272407,0.00024369276,0.000024306972,0.00016377703],"domain_scores_gemma":[0.99969393,0.00007572715,0.00013352346,0.00005437239,0.0000018236346,0.000040613217],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000061134,0.00011991597,0.00022793931,0.000014141588,0.00010779867,0.000013568768,0.000113967304,0.00011184627,0.0005153996],"category_scores_gemma":[0.0000011438057,0.000052333216,0.000058098605,0.000101140744,0.00040732298,0.000040984778,0.00016798357,0.000077103934,0.0000021766793],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006526628,0.000071796516,0.00861411,0.0000018924038,0.00014323475,2.1450093e-7,0.00008002035,0.0000025142806,0.9800789,0.00018597643,0.000041723753,0.010714385],"study_design_scores_gemma":[0.00082595047,0.00023480623,0.21268797,0.000015805505,0.0004198984,0.000028122708,0.0018030495,0.00008111804,0.76401514,0.00028199903,0.019234918,0.00037121467],"about_ca_topic_score_codex":0.00008264657,"about_ca_topic_score_gemma":0.000107956126,"teacher_disagreement_score":0.21606372,"about_ca_system_score_codex":0.0000047873023,"about_ca_system_score_gemma":0.000002528133,"threshold_uncertainty_score":0.5643264},"labels":[],"label_agreement":null},{"id":"W2093668080","doi":"10.1128/aem.02793-13","title":"Synthetic Promoters Functional in Francisella novicida and Escherichia coli","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"TetR; Promoter; Francisella; Biology; Operon; Repressor; Plasmid; Molecular biology; Transcription (linguistics); lac operon; Reporter gene; Genetics; Gene; Escherichia coli; Transcription factor; Gene expression","score_opus":0.0024507933109038094,"score_gpt":0.14376416869102945,"score_spread":0.14131337538012564,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2093668080","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99886346,0.0004268225,0.000037407786,0.00017348141,0.00006305925,0.00025018735,0.000018877008,0.0000055635537,0.00016116198],"genre_scores_gemma":[0.9985355,0.00039078,0.00033350196,0.00042154544,0.000041023824,0.000046510766,0.00015517126,0.000012941788,0.00006302527],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992482,0.00001642903,0.00013621178,0.00037030037,0.000015590855,0.00021325552],"domain_scores_gemma":[0.9997857,0.0000052452997,0.00003390453,0.00012804699,0.0000017049147,0.000045392353],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000437092,0.00014248131,0.00013326824,0.000030224252,0.000042180436,0.0000106317075,0.00005866586,0.000275719,0.000113767455],"category_scores_gemma":[0.0000018466075,0.00013024968,0.000016853872,0.00002351498,0.00031797824,0.0000016002564,0.00015239428,0.000088672175,0.000028023607],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024315286,0.00004392272,0.002508548,0.0000052995156,0.000013424492,4.905748e-7,0.00001499787,0.0000016195938,0.991304,0.00003888258,0.00008684584,0.0059576794],"study_design_scores_gemma":[0.0012087879,0.00033633973,0.09345413,0.000004995291,0.000012584099,0.000079889964,0.00019063413,0.000023162695,0.88289917,0.00025030412,0.021172121,0.0003679143],"about_ca_topic_score_codex":0.000020556901,"about_ca_topic_score_gemma":0.000010515063,"teacher_disagreement_score":0.10840484,"about_ca_system_score_codex":0.000008436698,"about_ca_system_score_gemma":0.0000057579205,"threshold_uncertainty_score":0.5311428},"labels":[],"label_agreement":null},{"id":"W2096018607","doi":"10.1128/aem.00985-08","title":"Rapid Determination of<i>Escherichia coli</i>O157:H7 Lineage Types and Molecular Subtypes by Using Comparative Genomic Fingerprinting","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Lethbridge; Public Health Agency of Canada","funders":"Public Health Agency; Canadian Food Inspection Agency","keywords":"Biology; Typing; Dendrogram; Escherichia coli; Genetics; Locus (genetics); Pulsed-field gel electrophoresis; DNA profiling; Lineage (genetic); Computational biology; Gene; Genotype; Genetic diversity; Population; DNA","score_opus":0.0115430508921318,"score_gpt":0.2233755160229233,"score_spread":0.2118324651307915,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096018607","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949448,0.0042032846,0.0004054014,0.000010928293,0.000015963738,0.00017867476,0.000042952313,0.000004195378,0.00019377505],"genre_scores_gemma":[0.9954946,0.0017631663,0.0024278623,0.000119947916,0.000022322702,0.000011582988,0.00011824886,0.000012954152,0.00002930719],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992864,0.000046377758,0.00015588773,0.00029407314,0.0000290333,0.00018819736],"domain_scores_gemma":[0.9997503,0.00002088049,0.000080657446,0.00010276303,0.000005498423,0.000039877094],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000073438125,0.00014678868,0.00020553099,0.000022681184,0.000121040386,0.0000045608604,0.00006771672,0.00010647392,0.0000073863644],"category_scores_gemma":[0.0000055097125,0.00014507123,0.000026849591,0.000027165017,0.0005185048,0.0000030830183,0.00022488667,0.000080562146,0.0000017141207],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004447906,0.000039509945,0.003628914,0.000013613661,0.000048092304,0.0000014903945,0.0001606636,0.0000061511614,0.99550104,0.000008153609,0.000040487736,0.000507379],"study_design_scores_gemma":[0.0004814629,0.00016419706,0.0049649146,0.0000041187636,0.000020213593,0.00003076857,0.00018447776,0.00015208284,0.9898122,0.0000053407593,0.0039992426,0.00018097117],"about_ca_topic_score_codex":0.000011319902,"about_ca_topic_score_gemma":0.0000020964414,"teacher_disagreement_score":0.005688856,"about_ca_system_score_codex":0.000013493643,"about_ca_system_score_gemma":0.000012633339,"threshold_uncertainty_score":0.5915833},"labels":[],"label_agreement":null},{"id":"W2096219936","doi":"10.1128/aem.70.7.3862-3867.2004","title":"Accurate Estimation of Viral Abundance by Epifluorescence Microscopy","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":177,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Glutaraldehyde; Abundance (ecology); Fixation (population genetics); SYBR Green I; Chemistry; Formaldehyde; Biology; Molecular biology; Chromatography; Biochemistry; Real-time polymerase chain reaction; Ecology","score_opus":0.0026989288626005537,"score_gpt":0.1994605606142763,"score_spread":0.19676163175167574,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096219936","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969243,0.0000927292,0.0020251418,0.000099739715,0.00007062733,0.0001647098,0.0001597977,0.000014637519,0.0004483406],"genre_scores_gemma":[0.9962859,0.000141422,0.0029819245,0.0002720835,0.000008392047,0.000011891099,0.00017639254,0.000011841577,0.00011015023],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992282,0.000011921005,0.00021370225,0.00029906826,0.00002730509,0.0002198522],"domain_scores_gemma":[0.9996909,0.000013320008,0.00010671647,0.00013703709,5.085566e-7,0.000051504547],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004321779,0.00014969755,0.00016035917,0.000015111089,0.00010053915,0.000010220134,0.0001194363,0.00009021934,0.00055318],"category_scores_gemma":[0.0000014556633,0.00014343367,0.000032742446,0.00003857871,0.00057726435,0.0001082813,0.00015053805,0.000104473285,0.00026855548],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021735741,0.0001011463,0.00021047138,0.0000045073184,0.0000075211233,6.7388453e-7,0.00013548907,0.00053387997,0.9956532,0.000052468295,0.00033307725,0.0029458117],"study_design_scores_gemma":[0.00068894215,0.000108312124,0.01234777,0.000011195985,0.000015476262,0.00006583799,0.00008076738,0.000028462839,0.98010856,0.0002922801,0.0060332613,0.0002191357],"about_ca_topic_score_codex":0.0001746703,"about_ca_topic_score_gemma":0.000009800293,"teacher_disagreement_score":0.015544659,"about_ca_system_score_codex":0.000103019964,"about_ca_system_score_gemma":0.0000032038024,"threshold_uncertainty_score":0.6056933},"labels":[],"label_agreement":null},{"id":"W2096378061","doi":"10.1128/aem.66.1.419-421.2000","title":"Two Murine Monoclonal Antibodies against Serogroup E Salmonellae","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"","keywords":"Monoclonal antibody; Epitope; Salmonella; Microbiology; Biology; Serotype; Antigen; Virology; Enterobacteriaceae; Antibody; Bacteria; Escherichia coli; Immunology; Gene; Genetics","score_opus":0.0037099282132744666,"score_gpt":0.18727043480339073,"score_spread":0.18356050659011627,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096378061","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97368544,0.00009178393,0.0000061101337,0.00009521712,0.00006907364,0.00016423708,0.000121531426,0.00003801876,0.025728561],"genre_scores_gemma":[0.9955429,0.00071791984,0.00085178274,0.0010007361,0.000056470584,0.00001574595,0.0002868274,0.000021206928,0.0015064334],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99895024,0.000021653681,0.0002055571,0.0004380215,0.000030964056,0.0003535849],"domain_scores_gemma":[0.9996685,0.000018402898,0.000044248365,0.00017581455,3.535979e-7,0.00009272445],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00004725353,0.00022358214,0.00019445225,0.000019603027,0.00020098247,0.000021206499,0.00013041476,0.000088561465,0.014122702],"category_scores_gemma":[3.859052e-7,0.00020675492,0.00005394762,0.0000421077,0.0004954415,0.000086947526,0.00018686934,0.0001548337,0.005863361],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031176085,0.000107892825,0.004505044,0.0000019550403,0.000018926501,0.000006341735,0.00010119684,0.00007857279,0.95591277,0.00001280432,0.00081166514,0.038411647],"study_design_scores_gemma":[0.0022334429,0.00017131954,0.32893047,0.000013993335,0.00006211165,0.00063223206,0.00047604673,0.00008123831,0.12834121,0.00017768312,0.53782094,0.0010593077],"about_ca_topic_score_codex":0.00008965408,"about_ca_topic_score_gemma":0.000035167188,"teacher_disagreement_score":0.8275716,"about_ca_system_score_codex":0.00006897821,"about_ca_system_score_gemma":0.0000015023119,"threshold_uncertainty_score":0.9949107},"labels":[],"label_agreement":null},{"id":"W2096379963","doi":"10.1128/aem.67.6.2775-2780.2001","title":"Comparison of Endotoxin Exposure Assessment by Bioaerosol Impinger and Filter-Sampling Methods","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Indoor Air Quality and Microbial Exposure","field":"Environmental Science","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; National Institute of Environmental Health Sciences; Institut de Recherche Robert-Sauvé en Santé et en Sécurité du Travail","keywords":"Bioaerosol; Limulus amebocyte lysate; Indoor bioaerosol; Sampling (signal processing); Chromatography; Chemistry; Environmental science; Filter (signal processing); Environmental chemistry; Biology; Aerosol; Lipopolysaccharide","score_opus":0.020626936971585633,"score_gpt":0.3110148461463805,"score_spread":0.29038790917479484,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096379963","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99284166,0.00045091737,0.0048884647,0.00009780931,0.000066135486,0.000295769,0.00011499255,0.000018774235,0.0012254613],"genre_scores_gemma":[0.9848138,0.00024136386,0.01419942,0.0003557441,0.000017913197,0.000020384785,0.00019163449,0.000017522625,0.00014219609],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985985,0.000122001664,0.00040173798,0.00047364528,0.000053609674,0.00035046728],"domain_scores_gemma":[0.99945223,0.000105651416,0.00015828598,0.00019163724,8.834203e-7,0.000091320435],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032805055,0.00023786617,0.00039587507,0.000024808647,0.00016865897,0.000014502918,0.0001380758,0.00020129724,0.00088705093],"category_scores_gemma":[0.0000030140063,0.00022154207,0.000045202287,0.000055393997,0.000743832,0.00006124595,0.00034350983,0.0002065421,0.000026479021],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027890346,0.00016228607,0.043084376,0.000010542995,0.000023040215,7.3332404e-7,0.0004870303,0.000017858967,0.9360744,0.000065941065,0.00048268272,0.019563256],"study_design_scores_gemma":[0.0018224706,0.00051462214,0.022197274,0.000015920941,0.00006565047,0.00015261995,0.0019760951,0.000077395474,0.87993973,0.00023588742,0.09234075,0.00066158536],"about_ca_topic_score_codex":0.00007242947,"about_ca_topic_score_gemma":0.000011377366,"teacher_disagreement_score":0.091858074,"about_ca_system_score_codex":0.000068147434,"about_ca_system_score_gemma":0.00000336023,"threshold_uncertainty_score":0.9712586},"labels":[],"label_agreement":null},{"id":"W2096403945","doi":"10.1128/aem.02677-10","title":"The Swarming Motility of Pseudomonas aeruginosa Is Blocked by Cranberry Proanthocyanidins and Other Tannin-Containing Materials","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":274,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Cranberry Institute; Yale University","keywords":"Swarming motility; Swarming (honey bee); Bacteria; Rhamnolipid; Biofilm; Motility; Pseudomonas aeruginosa; Microbiology; Flagellum; Tannin; Pilus; Biology; Proanthocyanidin; Hydrolyzable Tannin; Polyphenol; Chemistry; Food science; Biochemistry; Escherichia coli; Quorum sensing; Cell biology","score_opus":0.007652079301097257,"score_gpt":0.18194082632814565,"score_spread":0.17428874702704839,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096403945","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986176,0.00059465464,0.000008821303,0.000031335458,0.000066520246,0.00018379228,0.00021654906,0.000004623374,0.0002761307],"genre_scores_gemma":[0.9989407,0.00029442864,0.00028307113,0.00027617798,0.00003954102,0.0000076089286,0.00007832488,0.00001650122,0.000063620704],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991598,0.000039296712,0.00022203775,0.00032362845,0.000019974006,0.00023527995],"domain_scores_gemma":[0.9996606,0.000011930181,0.00010949406,0.00017221078,0.00000251736,0.00004325298],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014922667,0.00016586731,0.00018659022,0.000010236456,0.00014527577,0.000010566006,0.00007890858,0.00016870805,0.00003977548],"category_scores_gemma":[0.000002778334,0.00012442115,0.000027610904,0.000012268393,0.00050871464,0.0000024608698,0.0001659531,0.00005726812,0.0000022688355],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016572971,0.00003324978,0.002612175,0.000007426565,0.000047212092,4.042252e-7,0.00023477894,1.7117666e-8,0.99535954,0.000048150676,0.00009895292,0.001392368],"study_design_scores_gemma":[0.0004094195,0.00016021889,0.0036677062,0.000004393274,0.000019333433,0.000044218643,0.00040017182,4.4799168e-7,0.98573095,0.000020760644,0.009412078,0.0001303337],"about_ca_topic_score_codex":0.0000636939,"about_ca_topic_score_gemma":0.000004568995,"teacher_disagreement_score":0.009628618,"about_ca_system_score_codex":0.0000058123237,"about_ca_system_score_gemma":0.0000061740006,"threshold_uncertainty_score":0.5073747},"labels":[],"label_agreement":null},{"id":"W2096446892","doi":"10.1128/aem.71.10.5710-5718.2005","title":"Unexpectedly High Bacterial Diversity in Arctic Tundra Relative to Boreal Forest Soils, Revealed by Serial Analysis of Ribosomal Sequence Tags","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Climate change and permafrost","field":"Earth and Planetary Sciences","cited_by":166,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Killam Trusts","keywords":"Tundra; Taiga; Arctic; Permafrost; Biome; Temperature gradient gel electrophoresis; Ecology; Soil water; Biology; Phylogenetic diversity; Boreal; Environmental science; 16S ribosomal RNA; Phylogenetic tree; Ecosystem; Bacteria","score_opus":0.012797361977293363,"score_gpt":0.18972307519861484,"score_spread":0.17692571322132147,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096446892","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9912041,0.00006442573,0.0000041145277,0.00012757085,0.00006603988,0.00016015867,0.008147315,0.000006147435,0.00022016835],"genre_scores_gemma":[0.9827753,0.00010688048,0.000103847575,0.00020680223,0.00006320084,0.0000017762682,0.016713837,0.0000028550705,0.000025513062],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99909383,0.00004460769,0.00021846635,0.00032401472,0.000045794288,0.0002733097],"domain_scores_gemma":[0.99965876,0.00006937346,0.0000775427,0.00010552318,0.0000021244714,0.000086681954],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00006884757,0.00014948894,0.0003221183,0.000110865265,0.000105020576,0.000009155081,0.00012263135,0.00012246984,0.0016974619],"category_scores_gemma":[0.0000025614713,0.00013844125,0.000044466196,0.00017294733,0.0002184328,0.000087860615,0.00012488097,0.000095052,0.000045307155],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024016254,0.000035798214,0.7036526,0.0000043646555,0.000081969134,0.0000030413667,0.0008546741,0.00026855926,0.29406282,0.000021615188,0.00009168923,0.0006826724],"study_design_scores_gemma":[0.00065842347,0.00013647818,0.9968777,0.000004257353,0.00011282748,0.00000699315,0.00027555056,0.00007658359,0.0011903308,0.00007080319,0.00040797834,0.00018211565],"about_ca_topic_score_codex":0.011035972,"about_ca_topic_score_gemma":0.042669483,"teacher_disagreement_score":0.29322502,"about_ca_system_score_codex":0.000028557364,"about_ca_system_score_gemma":0.000005583656,"threshold_uncertainty_score":0.9992151},"labels":[],"label_agreement":null},{"id":"W2096581522","doi":"10.1128/aem.01191-10","title":"Anaerobic Biotransformation of High Concentrations of Chloroform by an Enrichment Culture and Two Bacterial Isolates","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Laurentian University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biotransformation; Biodegradation; Chloroform; Food science; Chemistry; Bioaugmentation; Acclimatization; Environmental chemistry; Enrichment culture; Bacteria; Microbiology; Biology; Chromatography; Biochemistry; Microorganism; Organic chemistry; Botany; Enzyme","score_opus":0.0023602373430434546,"score_gpt":0.17476478852337912,"score_spread":0.17240455118033568,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096581522","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990051,0.00002151101,0.000030321507,0.000037144033,0.000082580875,0.00021198121,0.00042084834,0.000006892636,0.0001836268],"genre_scores_gemma":[0.99816823,0.00022798004,0.00063503435,0.000085848566,0.000014367484,0.0000029437997,0.0008390451,0.0000052331347,0.00002130467],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993624,0.000013937246,0.00024056899,0.00020327441,0.00003273205,0.0001470809],"domain_scores_gemma":[0.9997146,0.000009106128,0.00011536445,0.00009429727,0.0000012191055,0.000065376014],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007151114,0.00012425847,0.00015844911,0.000014828765,0.00006207675,0.000006897227,0.00007448022,0.00012260325,0.0009967671],"category_scores_gemma":[9.336839e-7,0.00010210406,0.000016724012,0.000034905457,0.0005326545,0.00010234311,0.000055548342,0.00008458359,0.000013317029],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029913235,0.00009542578,0.0049517294,0.000004792137,0.0000084867015,4.592341e-8,0.0004617854,0.000001886104,0.99194306,0.00015611447,0.00013087266,0.002215893],"study_design_scores_gemma":[0.0008786138,0.00014928187,0.014411847,0.0000015898667,0.000015414287,0.00000945279,0.00018400027,0.000013732108,0.97981143,0.000054964836,0.0043387134,0.00013096942],"about_ca_topic_score_codex":0.00010960311,"about_ca_topic_score_gemma":0.00009101814,"teacher_disagreement_score":0.012131634,"about_ca_system_score_codex":0.000017408973,"about_ca_system_score_gemma":0.0000027054846,"threshold_uncertainty_score":0.99991643},"labels":[],"label_agreement":null},{"id":"W2096718601","doi":"10.1128/aem.01834-06","title":"Mechanism of Resistance to <i>Bacillus thuringiensis</i> Toxin Cry1Ac in a Greenhouse Population of the Cabbage Looper, <i>Trichoplusia ni</i>","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect Resistance and Genetics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Cornell University Agricultural Experiment Station; Cooperative State Research, Education, and Extension Service; U.S. Department of Agriculture","keywords":"Cry1Ac; Bacillus thuringiensis; Trichoplusia; Cabbage looper; Biology; Midgut; Population; Microbiology; Strain (injury); Botany; Genetically modified crops; Bacteria; Genetics; PEST analysis; Transgene; Larva; Gene; Noctuidae","score_opus":0.002055842084425159,"score_gpt":0.15892323675706002,"score_spread":0.15686739467263486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096718601","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99857676,0.0005309698,0.000086332264,0.000035805846,0.00004480482,0.00024584006,0.000100296726,0.0000024056458,0.00037679967],"genre_scores_gemma":[0.9987863,0.00012567929,0.00031278402,0.00026032855,0.000029416953,0.000012103624,0.00010219215,0.000013668046,0.00035756902],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992201,0.000030182988,0.00025940582,0.0002633955,0.00004199004,0.00018496686],"domain_scores_gemma":[0.99960274,0.000006253269,0.00012186434,0.000244673,0.0000041749004,0.000020285723],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007559624,0.00013021364,0.0001745727,0.00003439718,0.000041087704,0.000002468368,0.00012778385,0.00013755054,0.000004333122],"category_scores_gemma":[0.000003460331,0.000108754655,0.000041345447,0.00007626261,0.00011400328,0.0000015599634,0.00014961237,0.000054490476,0.0000014052648],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008791731,0.000060687355,0.0073197107,0.000016747283,0.000007714444,5.936152e-7,0.000048678074,0.00009775805,0.9916967,0.00031936014,0.00019110188,0.00015303264],"study_design_scores_gemma":[0.0005489542,0.00007090018,0.063836515,0.0000109424545,0.0000112284015,0.0000066154657,0.000060984607,9.1937636e-7,0.93203473,0.00024810535,0.003028939,0.00014118406],"about_ca_topic_score_codex":0.00013364237,"about_ca_topic_score_gemma":0.0012982569,"teacher_disagreement_score":0.059661984,"about_ca_system_score_codex":0.000020499321,"about_ca_system_score_gemma":0.000008840611,"threshold_uncertainty_score":0.44348863},"labels":[],"label_agreement":null},{"id":"W2096911199","doi":"10.1128/aem.71.9.5208-5218.2005","title":"Quorum-Sensing Mutations Affect Attachment and Stability of <i>Burkholderia cenocepacia</i> Biofilms","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":95,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Fondation pour la Recherche Médicale; Cystic Fibrosis Foundation","keywords":"Biofilm; Quorum sensing; Mutant; Burkholderia cenocepacia; Microbiology; Biology; Burkholderia; Response regulator; Bacteria; Cell biology; Gene; Biochemistry; Genetics","score_opus":0.006012977575567627,"score_gpt":0.19974848066379572,"score_spread":0.1937355030882281,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096911199","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987143,0.00049636327,0.000033761182,0.00011762335,0.00005496842,0.00018521807,0.00013045456,0.0000070427755,0.00026026566],"genre_scores_gemma":[0.9969356,0.00024522308,0.0020151653,0.00023661178,0.00007986979,0.0000022977365,0.00045745622,0.000014114598,0.000013660155],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991573,0.0000339925,0.00020451726,0.0003584926,0.000022849457,0.00022284266],"domain_scores_gemma":[0.9996766,0.000014079381,0.0000800416,0.00016513013,0.0000031524257,0.000060997812],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009690648,0.00016627878,0.00019154882,0.00002179548,0.000093378236,0.000009452604,0.000040879822,0.00016238696,0.000026308315],"category_scores_gemma":[0.0000029956525,0.00015687497,0.000037424103,0.000021113838,0.00042797392,0.0000037111424,0.00013591014,0.000060682567,0.0000041206586],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004960813,0.00004849296,0.0022878544,0.000011114694,0.00003050699,3.3295456e-7,0.00007841309,0.0000018746691,0.9918028,0.000034168264,0.000050591003,0.0056042024],"study_design_scores_gemma":[0.00053286523,0.00014727484,0.0043656095,0.0000044445105,0.000022403772,0.000060733655,0.00023238128,0.000006623123,0.984972,0.000005915447,0.0094761485,0.00017361809],"about_ca_topic_score_codex":0.000013790845,"about_ca_topic_score_gemma":0.000016844542,"teacher_disagreement_score":0.009425557,"about_ca_system_score_codex":0.000011520297,"about_ca_system_score_gemma":0.000007937776,"threshold_uncertainty_score":0.6397176},"labels":[],"label_agreement":null},{"id":"W2097334102","doi":"10.1128/aem.03817-12","title":"Predation in Homogeneous and Heterogeneous Phage Environments Affects Virulence Determinants of Pseudomonas aeruginosa","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Virulence; Biology; Lytic cycle; Pyocyanin; Biofilm; Pseudomonas aeruginosa; Genetics; Gene; Pyoverdine; Phenotype; Experimental evolution; Population; Microbiology; Bacteriophage; Bacteria; Quorum sensing; Escherichia coli","score_opus":0.003680082887909722,"score_gpt":0.183208665929691,"score_spread":0.1795285830417813,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097334102","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989982,0.00013677141,0.000032781074,0.000016854861,0.00004860941,0.00046423246,0.000052076437,0.000007792992,0.00024266595],"genre_scores_gemma":[0.99879044,0.00044852792,0.0003675475,0.00013826073,0.000009450279,0.00006002594,0.000047690606,0.000016530672,0.00012154779],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989241,0.000039747792,0.0002566919,0.00043947183,0.00003972363,0.0003002811],"domain_scores_gemma":[0.9995929,0.000037338214,0.000117847514,0.00017264072,3.4355082e-7,0.00007890094],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000056885394,0.00021023257,0.0002436785,0.000042158248,0.00007364798,0.000013861862,0.00011169453,0.00012947393,0.0010684406],"category_scores_gemma":[0.0000017914787,0.00020274112,0.000029883273,0.000039472434,0.00049730926,0.00013463382,0.0003128688,0.00010670997,0.00020988591],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001368685,0.00011907369,0.026176024,0.000008243485,0.0000073954584,0.000005912632,0.0001641949,0.000049429247,0.9549336,0.0000016393486,0.000023906705,0.018496916],"study_design_scores_gemma":[0.0008604783,0.00019316733,0.39996073,0.000017216656,0.00002240697,0.00043422088,0.00014679779,0.00016663103,0.59628814,0.000075008094,0.0014821119,0.00035309672],"about_ca_topic_score_codex":0.00027346282,"about_ca_topic_score_gemma":0.00008242571,"teacher_disagreement_score":0.3737847,"about_ca_system_score_codex":0.00007629788,"about_ca_system_score_gemma":0.0000016784402,"threshold_uncertainty_score":0.99984473},"labels":[],"label_agreement":null},{"id":"W2097431243","doi":"10.1128/aem.71.12.7792-7798.2005","title":"Planktonic-Cell Yield of a Pseudomonad Biofilm","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":95,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University","funders":"Fondation pour la Recherche Médicale; Claude Leon Foundation; National Research Foundation","keywords":"Biofilm; Chemostat; Microbiology; Biology; Plankton; Bacteria; Yield (engineering); Biocide; Chemistry; Ecology; Materials science","score_opus":0.00397684889377376,"score_gpt":0.16647450663109545,"score_spread":0.1624976577373217,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097431243","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974006,0.00060458825,0.000013195905,0.000074279495,0.000049048354,0.00009504422,0.00010502787,0.000004709847,0.0016534948],"genre_scores_gemma":[0.99758834,0.0003725693,0.0009832974,0.00039851846,0.00011640959,0.000003223476,0.00033483678,0.0000127521325,0.00019002688],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99934936,0.000010699323,0.00016333364,0.00026429846,0.000017079758,0.00019521468],"domain_scores_gemma":[0.9997287,0.000007764985,0.00006449343,0.0001530877,0.0000014445471,0.000044549834],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004648848,0.00013219698,0.00014636987,0.000019751473,0.000043461398,0.000004111669,0.000069249356,0.00018404207,0.00006678777],"category_scores_gemma":[0.0000013286069,0.000121779216,0.000039703235,0.000014357071,0.00019556856,0.0000016425516,0.00011663379,0.000056884495,0.000021376214],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006292877,0.00006335444,0.0004211817,0.000005726668,0.000017085455,4.1934047e-7,0.000025091827,0.0000035142245,0.99559957,0.00004389186,0.00043568294,0.0033215454],"study_design_scores_gemma":[0.00042399266,0.00013754486,0.0006746482,0.000002534657,0.000010735603,0.000047382433,0.00007274091,0.0000019649065,0.9379121,0.0000031730601,0.06057433,0.0001388626],"about_ca_topic_score_codex":0.000008956719,"about_ca_topic_score_gemma":0.0000068109152,"teacher_disagreement_score":0.06013865,"about_ca_system_score_codex":0.000006793586,"about_ca_system_score_gemma":0.0000074682434,"threshold_uncertainty_score":0.49660122},"labels":[],"label_agreement":null},{"id":"W2097638190","doi":"10.1128/aem.02611-10","title":"Microbes in High Arctic Snow and Implications for the Cold Biosphere","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":223,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; ArcticNet; Parks Canada","keywords":"Snow; Arctic; Permafrost; Glacier; Snowpack; Arctic vegetation; Microbial mat; Ecology; Biosphere; Ecotype; Psychrophile; Biology; Physical geography; Oceanography; Geography; Cyanobacteria; Geology; Bacteria; Tundra; Paleontology","score_opus":0.010309024518815296,"score_gpt":0.1928227069500042,"score_spread":0.1825136824311889,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097638190","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99800795,0.000325937,0.000104984836,0.00046283225,0.00002490536,0.0004940588,0.0000964339,0.0000067699216,0.00047613124],"genre_scores_gemma":[0.9978876,0.0004523432,0.0007977393,0.0005058123,0.000009716886,0.00015328446,0.000040664498,0.0000094545585,0.00014337567],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992445,0.000019209661,0.00011704907,0.00028222287,0.0000128250995,0.00032417173],"domain_scores_gemma":[0.9996469,0.00012115865,0.000029829986,0.0001416934,3.6771561e-7,0.000060030587],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011720812,0.00010555093,0.00011345831,0.0000139211215,0.00016404764,0.000006970397,0.00013745499,0.000085436295,0.00079347147],"category_scores_gemma":[0.0000051267093,0.00007802499,0.0000171132,0.000036850666,0.0007346532,0.000032902793,0.00024392898,0.000095505486,0.0000877784],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002992221,0.00008101425,0.17154463,0.0000041467015,0.000013011486,4.9062476e-7,0.00017235048,0.0000024300732,0.8227449,0.001318452,0.00047287927,0.0036157947],"study_design_scores_gemma":[0.00082150847,0.00014167525,0.9644572,0.0000023120804,0.000015215391,0.000059250156,0.00030024865,0.000009811684,0.011993123,0.0029628542,0.019064398,0.0001723873],"about_ca_topic_score_codex":0.00056328933,"about_ca_topic_score_gemma":0.0007467822,"teacher_disagreement_score":0.81075174,"about_ca_system_score_codex":0.000058155347,"about_ca_system_score_gemma":0.0000025328588,"threshold_uncertainty_score":0.86879563},"labels":[],"label_agreement":null},{"id":"W2097677472","doi":"10.1128/aem.02221-15","title":"Roles of Thermophiles and Fungi in Bitumen Degradation in Mostly Cold Oil Sands Outcrops","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Petroleum Processing and Analysis","field":"Chemistry","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary","funders":"","keywords":"Outcrop; Environmental chemistry; Geology; Microbial mat; Thermophile; Microbial biodegradation; Asphalt; Mineralogy; Chemistry; Microorganism; Geochemistry; Bacteria; Materials science; Paleontology","score_opus":0.0068782692857823615,"score_gpt":0.18342585894424737,"score_spread":0.176547589658465,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097677472","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996732,0.001433986,0.0000018527609,0.000055543744,0.0000044239287,0.0000049897717,0.00003409029,0.000005608143,0.0017275037],"genre_scores_gemma":[0.9991146,0.0002867979,0.00006352348,0.000036225,0.000008554561,0.00000767579,0.00011768138,0.0000071418485,0.00035781375],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99947053,0.000009969669,0.00017162616,0.00019571968,0.000024443547,0.00012768996],"domain_scores_gemma":[0.9998147,0.000018304081,0.000059153444,0.00007271502,0.0000010242601,0.000034099547],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007827016,0.00010040969,0.00019491561,0.00005332027,0.000017049086,0.000005870703,0.000051090206,0.000103798564,0.000019448522],"category_scores_gemma":[0.0000016194975,0.000090095105,0.000013225753,0.000037382677,0.00014301593,0.000023228731,0.000054201122,0.00007845437,0.000001693516],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029082812,0.000057246772,0.05658709,0.000021172902,0.000011340383,0.0000013416329,0.00025680836,0.00001754841,0.9310823,0.000050723935,0.0000047915278,0.011880548],"study_design_scores_gemma":[0.005010397,0.000067675646,0.014758572,0.000066071785,0.00006966394,0.00003818922,0.006341722,0.00027175888,0.9678619,0.00036782643,0.0046226596,0.00052354735],"about_ca_topic_score_codex":0.000044069944,"about_ca_topic_score_gemma":0.000060626186,"teacher_disagreement_score":0.041828517,"about_ca_system_score_codex":0.000036251655,"about_ca_system_score_gemma":0.0000074490663,"threshold_uncertainty_score":0.3673972},"labels":[],"label_agreement":null},{"id":"W2097689680","doi":"10.1128/aem.00873-10","title":"Metatranscriptomic Analysis of the Response of River Biofilms to Pharmaceutical Products, Using Anonymous DNA Microarrays","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Environmental DNA in Biodiversity Studies","field":"Environmental Science","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Environment and Climate Change Canada; University of Saskatchewan; Biotechnology Research Institute","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biofilm; Biology; DNA microarray; Gene; Transcriptional regulation; Transcription (linguistics); Microbiology; DNA; Aquatic ecosystem; Gene expression; Bacteria; Genetics; Ecology","score_opus":0.01015120011027416,"score_gpt":0.20875809748960325,"score_spread":0.1986068973793291,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097689680","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99881727,0.00006053761,0.000017630015,0.00012593163,0.00012219924,0.00038307492,0.0003882458,0.000007374079,0.0000777484],"genre_scores_gemma":[0.9938135,0.000035708523,0.0057492396,0.0003005686,0.000008066648,0.000005854387,0.000020975922,0.000011229505,0.000054821314],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987348,0.00008274904,0.00029172588,0.00049174577,0.0001035703,0.00029542067],"domain_scores_gemma":[0.9993597,0.000059744987,0.00012912664,0.00037265205,0.0000012678416,0.00007746397],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026144244,0.00021742783,0.0003790227,0.00008800724,0.0001550883,0.000003650202,0.0003341599,0.000119619435,0.0005681595],"category_scores_gemma":[0.000009191989,0.00017020898,0.00012462515,0.00034037052,0.0025306265,0.000038400274,0.00065213983,0.00018024548,0.00004606152],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001624924,0.00011868328,0.18188639,0.000005356683,0.00023110819,6.0181156e-7,0.0006379621,0.00016228163,0.8165257,0.000005877397,0.00007440472,0.00018911663],"study_design_scores_gemma":[0.0002522424,0.000036899488,0.38031465,0.000001303703,0.00046979962,0.000008817612,0.00019219455,0.000015827269,0.61676687,0.0000036556644,0.0018031113,0.00013462489],"about_ca_topic_score_codex":0.00008911975,"about_ca_topic_score_gemma":0.000016838047,"teacher_disagreement_score":0.19975884,"about_ca_system_score_codex":0.00008286022,"about_ca_system_score_gemma":0.000003087505,"threshold_uncertainty_score":0.93241984},"labels":[],"label_agreement":null},{"id":"W2097819685","doi":"10.1128/aem.00375-07","title":"Effectiveness of Standard UV Depuration at Inactivating <i>Cryptosporidium parvum</i> Recovered from Spiked Pacific Oysters ( <i>Crassostrea gigas</i> )","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Ulster University; European Commission","keywords":"Cryptosporidium parvum; Cryptosporidium; Shellfish; Biology; Crassostrea; Fecal coliform; Microbiology; Fishery; Salmonella; Feces; Veterinary medicine; Water quality; Aquatic animal; Oyster; Ecology; Bacteria; Fish <Actinopterygii>; Medicine","score_opus":0.0031611378565376278,"score_gpt":0.1817411830041845,"score_spread":0.17858004514764686,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097819685","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99488467,0.00039837093,0.0013111247,0.000011106299,0.00047108048,0.00039012506,0.0011278039,0.000033853907,0.0013718832],"genre_scores_gemma":[0.996182,0.00014071945,0.0001971232,0.00005383984,0.000027133996,0.000021934698,0.0033107419,0.000022225513,0.00004427736],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998567,0.00013159621,0.00041931897,0.00044545162,0.00002445115,0.00041220893],"domain_scores_gemma":[0.9985973,0.00089647376,0.00023453798,0.00022350952,0.000009194477,0.000038974325],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003726313,0.00026837998,0.00044820635,0.00007588688,0.00023611095,0.000007088637,0.00008831269,0.000395665,0.00016373486],"category_scores_gemma":[0.000022967866,0.0002562322,0.00007035486,0.00006836964,0.00047895804,0.00005374656,0.00012113781,0.0002099536,0.00009736129],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00078271294,0.00011808368,0.07029337,0.000024239864,0.00013232614,0.0000043845384,0.00013453138,0.0000075548664,0.927035,0.00017374662,0.00013405335,0.0011600371],"study_design_scores_gemma":[0.0023139354,0.00027280735,0.044223078,0.000039554416,0.000070096576,0.00008470272,0.0006475188,3.8554577e-7,0.94825464,0.00019343146,0.0036334842,0.0002663333],"about_ca_topic_score_codex":0.00011647815,"about_ca_topic_score_gemma":0.00002266654,"teacher_disagreement_score":0.026070291,"about_ca_system_score_codex":0.00022170994,"about_ca_system_score_gemma":0.000016351194,"threshold_uncertainty_score":0.999989},"labels":[],"label_agreement":null},{"id":"W2097947675","doi":"10.1128/aem.69.9.5157-5169.2003","title":"Cyanobacterial Diversity in Natural and Artificial Microbial Mats of Lake Fryxell (McMurdo Dry Valleys, Antarctica): a Morphological and Molecular Approach","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":475,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Warwick; British Antarctic Survey; European Commission; Université Laval","keywords":"Phylotype; Biology; Temperature gradient gel electrophoresis; Microbial mat; Internal transcribed spacer; Cyanobacteria; 16S ribosomal RNA; Extreme environment; Phylogenetic diversity; Phylogenetics; Phylogenetic tree; Botany; Gene; Bacteria; Genetics","score_opus":0.0073733545491611735,"score_gpt":0.18111122779450492,"score_spread":0.17373787324534373,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097947675","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987975,0.00010995408,0.0000320165,0.000038002378,0.000043739543,0.00026899943,0.000057400764,0.0000064356464,0.0006459916],"genre_scores_gemma":[0.99853724,0.00015359867,0.00097226,0.00021713726,0.0000095036285,0.000007454064,0.00007958752,0.0000086648815,0.0000145402455],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99870145,0.00012296639,0.00020214991,0.00049177336,0.00005354606,0.00042808746],"domain_scores_gemma":[0.9996798,0.0000399351,0.000053730084,0.00011470992,6.0618504e-7,0.00011119194],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021961083,0.00018353786,0.0002863949,0.00004274468,0.00013995022,0.00001070805,0.0001106947,0.00019261835,0.00049773825],"category_scores_gemma":[0.000009044414,0.00016780343,0.00002824019,0.00005038228,0.0013592852,0.00005182326,0.0008226719,0.000226569,0.000021386284],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013656478,0.00017627385,0.0836032,0.000008798365,0.000014495418,0.000023989156,0.00015042575,0.000004478503,0.9152152,0.00017577838,0.000024642255,0.0004661755],"study_design_scores_gemma":[0.005337148,0.00072748034,0.73436546,0.00000946299,0.000071166316,0.0010988095,0.0010793416,0.000098103046,0.24742523,0.0027853684,0.0059488663,0.0010535544],"about_ca_topic_score_codex":0.00013852636,"about_ca_topic_score_gemma":0.00018502842,"teacher_disagreement_score":0.66778994,"about_ca_system_score_codex":0.000051105937,"about_ca_system_score_gemma":0.0000043184154,"threshold_uncertainty_score":0.68428254},"labels":[],"label_agreement":null},{"id":"W2097967507","doi":"10.1128/aem.03277-13","title":"Potential Role of Nitrite for Abiotic Fe(II) Oxidation and Cell Encrustation during Nitrate Reduction by Denitrifying Bacteria","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":229,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Deutsche Forschungsgemeinschaft","keywords":"Nitrite; Nitrate; Chemistry; Lepidocrocite; Denitrifying bacteria; Anoxic waters; Paracoccus denitrificans; Denitrification; Ferrous; Goethite; Inorganic chemistry; Environmental chemistry; Heterotroph; Extracellular polymeric substance; Bacteria; Nuclear chemistry; Biochemistry; Biology; Biofilm; Organic chemistry","score_opus":0.0016060735669674248,"score_gpt":0.14024637045266522,"score_spread":0.1386402968856978,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097967507","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990558,0.00012501277,0.0000917343,0.000031241103,0.000047269466,0.0005189977,0.000058964008,0.000010383179,0.000060578466],"genre_scores_gemma":[0.9980549,0.00026204728,0.00093595125,0.000022842112,0.000030152827,0.000027402466,0.00053856475,0.000011663378,0.00011647186],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992512,0.000019449122,0.00021451108,0.00029125708,0.00003292378,0.0001906535],"domain_scores_gemma":[0.9997413,0.00001073034,0.0001299128,0.00006799109,0.0000018560781,0.000048207905],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006401956,0.00013282304,0.00012953472,0.00002789021,0.00017611953,0.000016782802,0.000045406076,0.00012393255,0.00032122424],"category_scores_gemma":[0.0000010593662,0.00012890424,0.000023268945,0.0000335099,0.00017852873,0.00013340732,0.00008971474,0.00005900035,0.000027444541],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003365004,0.00005554791,0.00074842013,0.00002533182,0.0000054982465,4.541949e-8,0.00023443167,0.000014475377,0.99613684,0.000002169101,0.00011086016,0.0026327558],"study_design_scores_gemma":[0.0006741491,0.00008241227,0.015114325,0.000002780716,0.00002358844,0.000019278816,0.00040593068,0.00010293595,0.98302585,0.0001771821,0.00022142327,0.00015016014],"about_ca_topic_score_codex":0.000105115716,"about_ca_topic_score_gemma":0.000001686848,"teacher_disagreement_score":0.014365905,"about_ca_system_score_codex":0.00005051308,"about_ca_system_score_gemma":0.0000017207416,"threshold_uncertainty_score":0.5256562},"labels":[],"label_agreement":null},{"id":"W2098048871","doi":"10.1128/aem.02125-07","title":"Detection of Viable but Nonculturable <i>Escherichia coli</i> O157:H7 Bacteria in Drinking Water and River Water","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":132,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Heritage Foundation for Medical Research; Fondation pour la Recherche Médicale","keywords":"Escherichia coli; Viable but nonculturable; Bacteria; Microbiology; Enterobacteriaceae; Tap water; Biology; Detection limit; Chemistry; Gene; Chromatography; Biochemistry","score_opus":0.004676449958344776,"score_gpt":0.17422380868333814,"score_spread":0.16954735872499338,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098048871","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992143,0.00028717497,0.000025699495,0.000022572658,0.000030452318,0.00018873785,0.000013246621,0.000004161596,0.00021367379],"genre_scores_gemma":[0.99783725,0.0013023682,0.00024048789,0.00012697048,0.00003039055,0.000036650476,0.00017002228,0.000013362729,0.00024251292],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99914306,0.000035871726,0.00016114919,0.00031529498,0.000028531467,0.00031609848],"domain_scores_gemma":[0.99981457,0.0000061782566,0.000025158135,0.000110709545,0.0000038006942,0.00003961084],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008543447,0.00015093386,0.0001918232,0.000026483254,0.00011455397,0.0000046556734,0.00006358316,0.00014627163,0.000019841118],"category_scores_gemma":[0.0000016889169,0.00010431031,0.000023648006,0.000018047172,0.0004891052,0.0000053836447,0.00029154593,0.00009810351,0.0000073653005],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000095243595,0.000049431488,0.0065172235,0.000014978185,0.000035439898,0.0000025581157,0.00034661085,0.0000052225523,0.99275136,0.0000016949612,0.000016684175,0.00016354483],"study_design_scores_gemma":[0.0007067038,0.00014409238,0.011094831,0.0000030951344,0.0000069005055,0.00003842909,0.00015194135,0.000004414025,0.9763297,0.000014495515,0.011359484,0.00014591689],"about_ca_topic_score_codex":0.0000491246,"about_ca_topic_score_gemma":0.000028933515,"teacher_disagreement_score":0.016421672,"about_ca_system_score_codex":0.000017677423,"about_ca_system_score_gemma":0.000004106015,"threshold_uncertainty_score":0.42536512},"labels":[],"label_agreement":null},{"id":"W2098247074","doi":"10.1128/aem.01619-07","title":"Applicability of Phylogenetic Methods for Characterizing the Public Health Significance of Verocytotoxin-Producing <i>Escherichia coli</i> Strains","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Verocytotoxin; Multilocus sequence typing; Phylogenetic tree; Escherichia coli; Multiplex polymerase chain reaction; Biology; Serotype; Genetics; Typing; Multiplex; Phylogenetics; VTEC; Polymerase chain reaction; Microbiology; Genotype; Gene","score_opus":0.02077494521919462,"score_gpt":0.2963274218231547,"score_spread":0.2755524766039601,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098247074","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9829785,0.0013133959,0.014348005,0.00021921229,0.000032746764,0.00092910265,0.00011810566,0.0000038031083,0.000057089746],"genre_scores_gemma":[0.98627675,0.00046896908,0.012532456,0.00041706525,0.000054086933,0.00011316138,0.00010954818,0.00001618245,0.000011797551],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986982,0.00010898589,0.00034653244,0.00040799545,0.00003650415,0.00040181619],"domain_scores_gemma":[0.9993006,0.000105736566,0.00020629639,0.00030766174,0.0000110559085,0.00006867694],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014128982,0.00015526505,0.0002933821,0.000021308211,0.00012602378,0.0000040615837,0.00019122403,0.00009842293,0.000003707882],"category_scores_gemma":[0.00003616873,0.00012405185,0.0000634885,0.00006129205,0.0007514538,0.0000018835199,0.00021560246,0.000096637064,3.1854617e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007238746,0.00010350835,0.0016850738,0.000084176696,0.00007373967,4.488465e-8,0.00018794378,0.0000013553283,0.9859867,0.00009833142,0.000020661288,0.011686076],"study_design_scores_gemma":[0.00042964146,0.00036036843,0.03019094,0.0000031752554,0.000009193468,0.000003490843,0.0006597338,0.00000458898,0.9534266,0.000035099867,0.014756074,0.000121114164],"about_ca_topic_score_codex":0.000009988549,"about_ca_topic_score_gemma":0.0000127726635,"teacher_disagreement_score":0.03256012,"about_ca_system_score_codex":0.00002854413,"about_ca_system_score_gemma":0.000046680663,"threshold_uncertainty_score":0.50586873},"labels":[],"label_agreement":null},{"id":"W2098249743","doi":"10.1128/aem.02159-13","title":"Novel Method for Genomic Promoter Shuffling by Using Recyclable Cassettes","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"URA3; Genetics; mCherry; Biology; Selectable marker; Shuffling; Locus (genetics); Transposable element; Genome; Genome editing; Gene; Computational biology; Tandem repeat; Saccharomyces cerevisiae; Plasmid; Computer science; Green fluorescent protein","score_opus":0.010346299706064559,"score_gpt":0.23586514725003757,"score_spread":0.225518847543973,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098249743","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9842619,0.00065561506,0.014148642,0.00009228413,0.00003722152,0.0004891436,0.00020359189,0.000004261597,0.00010737442],"genre_scores_gemma":[0.9527361,0.00012352162,0.045071404,0.00044981972,0.00010406161,0.00010548505,0.00079315883,0.000032258387,0.0005841829],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991258,0.000017103057,0.00013356829,0.00038573443,0.00002113611,0.0003166991],"domain_scores_gemma":[0.9997394,0.000016222282,0.00003679994,0.00013746934,0.0000043181985,0.00006576913],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009302127,0.00014513503,0.00013117316,0.000019539175,0.00010594465,0.00001891456,0.00010129971,0.00016666688,0.000059427017],"category_scores_gemma":[0.0000028534487,0.00013139326,0.000036684036,0.000014938752,0.00011880645,0.0000022173613,0.00017483936,0.000068568545,0.000018945302],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021467522,0.000047405712,0.00029064933,0.000011545495,0.00003590467,8.143083e-8,0.000016046808,0.000035491186,0.99562323,0.0000062684117,0.0010122602,0.0028996605],"study_design_scores_gemma":[0.0006023473,0.00013938762,0.00020753153,0.000002087266,0.000012352524,0.00006849108,0.000074872434,0.00046672462,0.9698945,0.000060906907,0.028269785,0.00020099382],"about_ca_topic_score_codex":0.000046267804,"about_ca_topic_score_gemma":0.000002168179,"teacher_disagreement_score":0.031525757,"about_ca_system_score_codex":0.00001865195,"about_ca_system_score_gemma":0.000010144745,"threshold_uncertainty_score":0.5358061},"labels":[],"label_agreement":null},{"id":"W2098354775","doi":"10.1128/aem.00919-10","title":"Phosphate Transporter Genes as Reliable Gene Markers for the Identification and Discrimination of Arbuscular Mycorrhizal Fungi in the Genus <i>Glomus</i>","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Université Laval","funders":"","keywords":"Biology; Gene; Glomus; Genetics; Nucleic acid sequence; Identification (biology); Botany; Microbiology; Colonization","score_opus":0.004048778370601339,"score_gpt":0.16771321309833898,"score_spread":0.16366443472773765,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098354775","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971012,0.0012468052,0.000021501099,0.00032938385,0.00012650338,0.00038592398,0.00069159525,0.0000037745433,0.00009330015],"genre_scores_gemma":[0.9940889,0.0037638978,0.00004282115,0.0002320607,0.000048082245,0.00006453572,0.0017148437,0.0000010423613,0.00004384099],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994982,0.00001562274,0.0001637736,0.00017486002,0.000027298576,0.000120283614],"domain_scores_gemma":[0.9994738,0.00039349048,0.00006266263,0.000050831386,0.000002399691,0.000016795142],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019444522,0.0000843417,0.00008633513,0.000007060548,0.00013474938,0.000014871605,0.00010316559,0.00007442543,0.00018878312],"category_scores_gemma":[0.0000035812775,0.000030349122,0.000032919645,0.000035489033,0.000046366735,0.000032832733,0.000016251322,0.00008703705,0.000009546224],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058882917,0.0000344183,0.01051052,0.0000053118465,0.000007804175,3.3280728e-7,0.00013334394,0.0000034724796,0.97921276,0.00042039467,0.00013961428,0.009473145],"study_design_scores_gemma":[0.00037523007,0.00026856913,0.31264046,0.000016038748,0.00015608486,0.00025006774,0.0035605605,0.00018491787,0.47001722,0.0013532385,0.21082051,0.00035707786],"about_ca_topic_score_codex":0.00021185454,"about_ca_topic_score_gemma":0.00014812028,"teacher_disagreement_score":0.5091955,"about_ca_system_score_codex":0.000003567493,"about_ca_system_score_gemma":0.0000012381342,"threshold_uncertainty_score":0.20670427},"labels":[],"label_agreement":null},{"id":"W2098624656","doi":"10.1128/aem.69.1.191-198.2003","title":"Carbon and Hydrogen Isotopic Fractionation during Anaerobic Biodegradation of Benzene","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":174,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biodegradation; Benzene; Chemistry; Environmental chemistry; Anaerobic exercise; Fractionation; Isotope fractionation; Carbon fibers; Organic chemistry; Materials science; Biology","score_opus":0.0033222146688603755,"score_gpt":0.15742643677815701,"score_spread":0.15410422210929664,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098624656","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987019,0.000087003704,0.000006072243,0.000031987638,0.000029603008,0.00014809711,0.000020379179,0.0000085295815,0.00096644793],"genre_scores_gemma":[0.99923545,0.00024409922,0.00028730198,0.00007036721,0.0000068533363,0.0000033842512,0.0000686127,0.0000062543786,0.00007766754],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993967,0.00002640484,0.00016430451,0.00024274476,0.000037136313,0.00013270021],"domain_scores_gemma":[0.99978155,0.000011708609,0.0000850971,0.00007935179,6.1459065e-7,0.000041661533],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006957841,0.00010657451,0.00011409986,0.000028496437,0.00006428311,0.000003965585,0.00003656881,0.00009526847,0.00044214792],"category_scores_gemma":[0.0000027926758,0.00009982469,0.000014324261,0.000047021334,0.0001960089,0.00003919987,0.000051693667,0.000053823853,0.000022055969],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000071919676,0.00003320198,0.044505518,0.0000041698654,0.0000068667914,2.5063565e-7,0.00007021035,0.000009934451,0.9545634,0.000059746788,0.0000090491585,0.0007304828],"study_design_scores_gemma":[0.0005529072,0.000035772384,0.13479972,0.0000020561097,0.000012215304,0.000028849401,0.00011862186,0.000014812735,0.8620115,0.00009415988,0.002187574,0.00014179951],"about_ca_topic_score_codex":0.000039003407,"about_ca_topic_score_gemma":0.000017646978,"teacher_disagreement_score":0.092551865,"about_ca_system_score_codex":0.000052698586,"about_ca_system_score_gemma":0.0000019411304,"threshold_uncertainty_score":0.48412097},"labels":[],"label_agreement":null},{"id":"W2098627352","doi":"10.1128/aem.02563-12","title":"Form and Function of Clostridium thermocellum Biofilms","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University; Toronto Metropolitan University; University of Toronto","funders":"","keywords":"Clostridium thermocellum; Clostridium; Microbiology; Function (biology); Biofilm; Computational biology; Biology; Clostridiaceae; Bacteria; Biological system; Cellulose; Evolutionary biology; Genetics; Biochemistry","score_opus":0.004008175286096919,"score_gpt":0.16385902493840032,"score_spread":0.1598508496523034,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098627352","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982909,0.0009552761,0.000014271011,0.000019242245,0.00010851494,0.00008338626,0.00004047632,0.0000031536865,0.00048476626],"genre_scores_gemma":[0.9988298,0.00039673498,0.00016721134,0.00014708287,0.00011656752,0.0000023999219,0.000282116,0.000009874488,0.000048210237],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995313,0.000010786709,0.00010742742,0.0001552985,0.000011750016,0.00018340486],"domain_scores_gemma":[0.9998091,0.000004204755,0.000049597103,0.000089229216,0.0000011181738,0.000046782523],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000059213737,0.00010195689,0.00010524785,0.000014215023,0.00004337629,0.000003057022,0.000025299276,0.00014471437,0.000029043194],"category_scores_gemma":[8.5749446e-7,0.00008828796,0.000021057047,0.000011100891,0.00019361328,0.000002739181,0.000092531496,0.000037419468,0.0000045761817],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006480723,0.000033235858,0.0029584,0.0000063161456,0.000022551829,5.215616e-8,0.000029280029,5.1717816e-8,0.99098355,0.0001104187,0.000085482054,0.005705873],"study_design_scores_gemma":[0.00032837733,0.00014917491,0.0108575635,0.0000015259934,0.00001797739,0.000032398737,0.00013262164,3.2581283e-7,0.9671827,0.0000103283055,0.021178858,0.00010817618],"about_ca_topic_score_codex":0.000004433072,"about_ca_topic_score_gemma":7.1683974e-7,"teacher_disagreement_score":0.02380086,"about_ca_system_score_codex":0.0000036174529,"about_ca_system_score_gemma":0.000002489576,"threshold_uncertainty_score":0.36002785},"labels":[],"label_agreement":null},{"id":"W2098737662","doi":"10.1128/aem.03476-14","title":"Sulfur Isotope Fractionation during the Evolutionary Adaptation of a Sulfate-Reducing Bacterium","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Sulfate; Fractionation; Population; Isotope fractionation; Sulfur; Adaptation (eye); Desulfovibrio; Ecology; Chemistry; Bacteria; Genetics; Chromatography","score_opus":0.005550229916147924,"score_gpt":0.1811621370685826,"score_spread":0.1756119071524347,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098737662","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979199,0.00043444053,0.0010335381,0.000085276944,0.000077277036,0.00012950783,0.000050221926,0.000004563683,0.0002652588],"genre_scores_gemma":[0.9982669,0.00016081984,0.00044830312,0.00006950634,0.00006317324,0.0000146672155,0.00068263133,0.000008552426,0.0002854445],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99949783,0.00003082086,0.00014252991,0.00018550275,0.000032423763,0.000110885165],"domain_scores_gemma":[0.9997562,0.0000062680438,0.00007479347,0.000119889955,0.000007682701,0.000035159916],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000077772194,0.00008655425,0.00007465303,0.000021049964,0.000071479844,0.0000036119582,0.00006118688,0.000094435316,0.000016146507],"category_scores_gemma":[0.000005455387,0.000072596384,0.000023780527,0.000024666113,0.00016789182,0.000003129927,0.000084430445,0.00005107159,0.000008503153],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006178359,0.000035165143,0.0026646093,0.000004704868,0.000018402081,1.3510765e-7,0.00010745408,0.0021585259,0.9942705,0.00008019959,0.00013018772,0.00046832132],"study_design_scores_gemma":[0.004601148,0.0006778168,0.4968324,0.000015161038,0.00008267893,0.0005150721,0.008421699,0.003717333,0.4112089,0.000460642,0.072659835,0.0008072973],"about_ca_topic_score_codex":0.000024930496,"about_ca_topic_score_gemma":0.000009471236,"teacher_disagreement_score":0.58306164,"about_ca_system_score_codex":0.000027587916,"about_ca_system_score_gemma":0.000018311322,"threshold_uncertainty_score":0.29603946},"labels":[],"label_agreement":null},{"id":"W2098785950","doi":"10.1128/aem.69.5.2595-2602.2003","title":"Insertional Mutagenesis of a Fungal Biocontrol Agent Led to Discovery of a Rare Cellobiose Lipid with Antifungal Activity","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":70,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Mutant; Biology; Mutagenesis; Insertional mutagenesis; Transformation (genetics); Bioassay; Plasmid; Microbiology; Biochemistry; Gene; Genetics","score_opus":0.00589908390728032,"score_gpt":0.16575335714547615,"score_spread":0.15985427323819584,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098785950","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987492,0.000054782697,0.000018982886,0.000045913494,0.000040016155,0.00021918562,0.0007118784,0.0000055379483,0.00015451356],"genre_scores_gemma":[0.99953854,0.000043552183,0.000085018604,0.00009146428,0.000015351465,0.000014882687,0.00012258263,0.0000012701411,0.00008736647],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999353,0.00005874154,0.00016232044,0.00022116383,0.000033090597,0.00017170372],"domain_scores_gemma":[0.99972224,0.0000756418,0.000097560165,0.00005641648,0.0000041815883,0.000043963082],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006967092,0.00013764093,0.00024131182,0.000017280667,0.00008675769,0.0000087694525,0.00008423693,0.00007508014,0.00017984917],"category_scores_gemma":[0.0000029819128,0.000060301903,0.000051374274,0.000068348076,0.00015487132,0.000054139324,0.00005872091,0.00007516111,0.000008078429],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027572914,0.00035111242,0.00831706,0.000006068696,0.000041243857,0.0000011880608,0.00003779263,0.0000065535446,0.98856777,0.00003627327,0.00003941787,0.0023197972],"study_design_scores_gemma":[0.00034684042,0.0004200391,0.12919122,0.000009866674,0.000018839351,0.000067481305,0.0003198484,9.402607e-7,0.86643285,0.000005220544,0.0030564007,0.00013046205],"about_ca_topic_score_codex":0.00010049921,"about_ca_topic_score_gemma":0.000060492264,"teacher_disagreement_score":0.12213493,"about_ca_system_score_codex":0.000020651456,"about_ca_system_score_gemma":0.0000054043358,"threshold_uncertainty_score":0.24590403},"labels":[],"label_agreement":null},{"id":"W2098980388","doi":"10.1128/aem.68.3.1290-1296.2002","title":"Sequence Analysis of Marine Virus Communities Reveals that Groups of Related Algal Viruses Are Widely Distributed in Nature","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":139,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Virus; Temperature gradient gel electrophoresis; Gene; Virus classification; DNA sequencing; Genome; Genetics; Virology; 16S ribosomal RNA","score_opus":0.014894431728028528,"score_gpt":0.21193398189186902,"score_spread":0.19703955016384048,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098980388","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99797344,0.00013710966,0.0000092628725,0.00004497635,0.000034378972,0.00013985124,0.0011469219,0.000009296859,0.0005047574],"genre_scores_gemma":[0.998343,0.0005532197,0.000119380944,0.00024952422,0.000002944724,0.000009336418,0.000652258,0.000010174856,0.000060162365],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990796,0.000063851214,0.0003656643,0.00023357714,0.000042109867,0.0002152366],"domain_scores_gemma":[0.99938554,0.0000748149,0.00025777312,0.0002406361,0.0000013191706,0.00003993678],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00008374337,0.00017700385,0.00042582443,0.00009963373,0.00006420954,0.000005896094,0.00018703219,0.00022358172,0.004379549],"category_scores_gemma":[0.0000027056528,0.00016562529,0.00008519255,0.00025318516,0.0007071643,0.00008421006,0.00036499102,0.00029558718,0.000027825019],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022660552,0.00016512908,0.13864435,0.000006462723,0.00012775508,0.0000030381393,0.0003552349,0.00016269177,0.8599239,0.000028587205,0.00009978313,0.00046040394],"study_design_scores_gemma":[0.00053738407,0.00007176088,0.9306208,0.00001988601,0.00022841671,0.000040989726,0.0013969609,0.00015931914,0.065171905,0.00008897119,0.0013981475,0.00026547044],"about_ca_topic_score_codex":0.0011140789,"about_ca_topic_score_gemma":0.0011084614,"teacher_disagreement_score":0.794752,"about_ca_system_score_codex":0.00009568969,"about_ca_system_score_gemma":8.263093e-7,"threshold_uncertainty_score":0.9965306},"labels":[],"label_agreement":null},{"id":"W2099221498","doi":"10.1128/aem.02065-12","title":"Unveiling the Expression Characteristics of IspC, a Cell Wall-Associated Peptidoglycan Hydrolase in Listeria monocytogenes, during Growth under Stress Conditions","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Canadian Food Inspection Agency","funders":"Canadian Institutes of Health Research; Ontario Centres of Excellence","keywords":"Biology; Gene expression; Molecular biology; Gene; Genetics","score_opus":0.01322706316726903,"score_gpt":0.22254472184196272,"score_spread":0.2093176586746937,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099221498","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99863607,0.00042785954,0.000020877069,0.000022605878,0.00009663375,0.00022753335,0.00044202092,0.0000059522336,0.00012042191],"genre_scores_gemma":[0.99781215,0.00032593758,0.000056809447,0.00016179791,0.00007096321,0.000039577324,0.001444467,0.000026776723,0.00006149177],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989541,0.00008208796,0.00030922785,0.00028413293,0.00003465569,0.0003357854],"domain_scores_gemma":[0.99949425,0.00002151373,0.00017102183,0.0002452126,0.0000037103916,0.00006429036],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011136899,0.00020195503,0.00021453208,0.000032670872,0.000110307614,0.0000073879846,0.00015902167,0.000216942,0.000035945042],"category_scores_gemma":[0.0000042402626,0.000170494,0.00004853222,0.000034533256,0.00025676517,0.000006722842,0.00036449858,0.00010073296,0.0000057777465],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010902237,0.00019314591,0.040697772,0.000023293707,0.0000279292,7.2837287e-7,0.00018686386,0.000021481756,0.95867944,0.000016102347,0.000015257791,0.000028937153],"study_design_scores_gemma":[0.00085760606,0.000059691993,0.10046769,0.000012297249,0.000022695005,0.000020754982,0.00038838453,0.00000385425,0.8976754,0.000011097342,0.00029248814,0.00018806003],"about_ca_topic_score_codex":0.000017845661,"about_ca_topic_score_gemma":0.000009906907,"teacher_disagreement_score":0.061004087,"about_ca_system_score_codex":0.000049722887,"about_ca_system_score_gemma":0.000010478854,"threshold_uncertainty_score":0.6952543},"labels":[],"label_agreement":null},{"id":"W2099315799","doi":"10.1128/aem.02139-08","title":"Cytosine Deaminase as a Negative Selection Marker for Gene Disruption and Replacement in the Genus <i>Streptomyces</i> and Other Actinobacteria","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal Clinical Research Institute; Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Actinobacteria; Biology; Streptomyces; Cytosine deaminase; Gene; Genetics; Cytosine; Escherichia coli; Selection (genetic algorithm); Cytidine deaminase; Bacteria; 16S ribosomal RNA; Genetic enhancement; Computer science","score_opus":0.00852636185434209,"score_gpt":0.2107237513434048,"score_spread":0.2021973894890627,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099315799","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984443,0.00025752865,0.0000069966704,0.00047536395,0.00001994573,0.00065851293,0.000057554033,0.0000063005223,0.00007347825],"genre_scores_gemma":[0.99731237,0.0005562809,0.0004754979,0.0013456588,0.00006411308,0.000016558697,0.000085698055,0.000009994191,0.00013385768],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99936175,0.000028751003,0.00013131242,0.00030511853,0.000020571895,0.00015251724],"domain_scores_gemma":[0.99979025,0.00004910726,0.000052029955,0.00007529715,0.0000019797885,0.000031363354],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011015684,0.00012985058,0.00016252969,0.000029801324,0.00011812994,0.0000069578723,0.000021307535,0.00009076517,0.00004534459],"category_scores_gemma":[0.000006757836,0.00008468595,0.000016637281,0.000031154963,0.00021236096,0.0000221122,0.000033576947,0.00008454235,0.000002832359],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00078400614,0.00008024744,0.009120175,0.000019414018,0.000025750178,0.0000021952271,0.00040653418,6.6583226e-8,0.9856569,0.000011690483,0.00014741607,0.003745605],"study_design_scores_gemma":[0.0029757887,0.000674637,0.09527987,0.000017712722,0.000095133815,0.0030830952,0.00069524354,0.000009015926,0.8555014,0.000036077865,0.041403852,0.0002281315],"about_ca_topic_score_codex":0.000046028243,"about_ca_topic_score_gemma":0.000009935673,"teacher_disagreement_score":0.13015546,"about_ca_system_score_codex":0.000031339332,"about_ca_system_score_gemma":0.000005040106,"threshold_uncertainty_score":0.34533927},"labels":[],"label_agreement":null},{"id":"W2099375536","doi":"10.1128/aem.02891-06","title":"Mixed-Species Biofilm Formation by Lactic Acid Bacteria and Rice Wine Yeasts","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":83,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Nutrasource","funders":"Ministry of Education, Culture, Sports, Science and Technology; Meiji University; Nihon University","keywords":"Biofilm; Yeast; Lactobacillus casei; Bacteria; Lactobacillus rhamnosus; Microbiology; Strain (injury); Biology; Saccharomyces cerevisiae; Wine; Food science; Lactic acid; Lactobacillaceae; Lactobacillus; Chemistry; Biochemistry; Fermentation","score_opus":0.00730955323832471,"score_gpt":0.1577581565402767,"score_spread":0.15044860330195198,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099375536","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99823993,0.0005598403,0.000023382425,0.00024786007,0.00006579532,0.000111901034,0.00017967237,0.000016941683,0.0005546428],"genre_scores_gemma":[0.9984135,0.00027113062,0.00009901231,0.0002966536,0.00008202723,0.0000030654253,0.0007347216,0.000001096196,0.00009881105],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99938715,0.000011940621,0.00013998135,0.00020577657,0.000023106008,0.00023202579],"domain_scores_gemma":[0.99982095,0.00002848919,0.000054062108,0.000029728677,0.0000012552767,0.00006552567],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010022485,0.0001229046,0.00011739957,0.000008555196,0.00012862138,0.000020356736,0.000060162336,0.00011550476,0.00011134334],"category_scores_gemma":[0.0000010039442,0.000056766756,0.000017245871,0.0000374674,0.00015797932,0.000053230317,0.00009471659,0.000072053605,0.000024636925],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027977192,0.0000446985,0.00042076278,0.0000036497322,0.000007707727,5.9711056e-7,0.000033310185,9.364547e-9,0.98265696,0.000105296094,0.00049706246,0.016201945],"study_design_scores_gemma":[0.0004296992,0.00030137386,0.19536403,0.000004671989,0.000017733015,0.0000979761,0.0008072152,0.0000029132862,0.701,0.00009014412,0.1016,0.00028429728],"about_ca_topic_score_codex":0.000007117657,"about_ca_topic_score_gemma":0.000011897275,"teacher_disagreement_score":0.28165704,"about_ca_system_score_codex":0.000020309097,"about_ca_system_score_gemma":4.9398005e-7,"threshold_uncertainty_score":0.23148811},"labels":[],"label_agreement":null},{"id":"W2099381655","doi":"10.1128/aem.01061-14","title":"Revision of N<sub>2</sub>O-Producing Pathways in the Ammonia-Oxidizing Bacterium Nitrosomonas europaea ATCC 19718","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":157,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Nitrosomonas europaea; Nitrite reductase; Nitrite; Nitrosomonas; Denitrification; Anoxic waters; Ammonia monooxygenase; Biochemistry; Nitrification; Biology; Nitrate reductase; Bacteria; Nitric oxide; Denitrifying bacteria; Chemistry; Nitrate; Microbiology; Environmental chemistry; Enzyme; Ecology; Archaea; Gene; Nitrogen; Genetics; Organic chemistry","score_opus":0.006317973232155508,"score_gpt":0.16275738995168565,"score_spread":0.15643941671953016,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099381655","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991666,0.00009569238,0.000022040462,0.00006395111,0.000046636782,0.00027723386,0.000019146111,0.000012586559,0.0002961232],"genre_scores_gemma":[0.99816036,0.00015249985,0.0012548242,0.00024737202,0.000041044907,0.000009047344,0.00010662905,0.000019135327,0.000009094481],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986461,0.00013723178,0.0003002021,0.00048479153,0.00008044581,0.00035125704],"domain_scores_gemma":[0.99947315,0.00006612538,0.00011393878,0.0002985029,5.950613e-7,0.000047675083],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035840654,0.00023247063,0.00026242543,0.00003577965,0.000116737116,0.000013460891,0.00021660692,0.00009517277,0.000054045486],"category_scores_gemma":[0.0000038708013,0.00016535845,0.000056400408,0.00008306389,0.00038863532,0.000060426173,0.0002814098,0.00014709066,0.00017055524],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033321012,0.00010995224,0.009771506,0.000008583032,0.000008207535,0.000004740816,0.00058689597,0.00001836653,0.9776208,0.00002671716,0.000052783267,0.011758138],"study_design_scores_gemma":[0.00070729025,0.00015781556,0.03999469,0.000013505232,0.00002456873,0.00008656044,0.00028298766,0.00001713405,0.9546979,0.00013863502,0.0036599166,0.00021900523],"about_ca_topic_score_codex":0.000041314106,"about_ca_topic_score_gemma":0.000016045971,"teacher_disagreement_score":0.030223183,"about_ca_system_score_codex":0.000058919155,"about_ca_system_score_gemma":0.0000019088352,"threshold_uncertainty_score":0.67431223},"labels":[],"label_agreement":null},{"id":"W2099579159","doi":"10.1128/aem.70.8.4613-4620.2004","title":"Treatment of<i>Salmonella enterica</i>Serovar Enteritidis with a Sublethal Concentration of Trisodium Phosphate or Alkaline pH Induces Thermotolerance","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Biochemistry; Salmonella enterica; Gel electrophoresis; Chemistry; Sodium dodecyl sulfate; Chloramphenicol; Biology; Escherichia coli; Gene; Antibiotics","score_opus":0.011279566807053495,"score_gpt":0.1892135258316672,"score_spread":0.1779339590246137,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099579159","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99865997,0.0005190144,0.000012628217,0.0001588709,0.000039336574,0.0003107982,0.00018315975,0.00001271697,0.00010349045],"genre_scores_gemma":[0.9977062,0.0015555462,0.00016438031,0.00013818081,0.00004456752,0.00003173047,0.00033374166,0.0000021440471,0.000023510887],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990369,0.000046459874,0.0003122027,0.00032539008,0.00003572313,0.00024332908],"domain_scores_gemma":[0.99960166,0.0000747455,0.0002018424,0.00006259928,0.0000042618462,0.000054862423],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000047830483,0.00020070926,0.00041815036,0.000006976808,0.000054599845,0.0000043746513,0.00009766621,0.00012039411,0.00014297766],"category_scores_gemma":[0.0000011580357,0.0000764044,0.000054925877,0.000063396874,0.00038995623,0.000030197265,0.000031739124,0.00004344946,0.000006359675],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006984355,0.0003647486,0.009283633,0.0000065625845,0.00004914601,0.0000049570917,0.00020282333,0.000006999619,0.97957104,0.00005253965,0.0000030393264,0.009756091],"study_design_scores_gemma":[0.002831312,0.0039318907,0.102776535,0.000021262646,0.00005614068,0.00018619142,0.0007851009,0.0000027954547,0.88620365,0.000115235634,0.0028144522,0.00027542264],"about_ca_topic_score_codex":0.00020708736,"about_ca_topic_score_gemma":0.000030864634,"teacher_disagreement_score":0.0934929,"about_ca_system_score_codex":0.000033178476,"about_ca_system_score_gemma":0.0000051933043,"threshold_uncertainty_score":0.3115681},"labels":[],"label_agreement":null},{"id":"W2099586826","doi":"10.1128/aem.69.1.275-284.2003","title":"Degradation of Polycyclic Aromatic Hydrocarbons at Low Temperature under Aerobic and Nitrate-Reducing Conditions in Enrichment Cultures from Northern Soils","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":260,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Science Council","keywords":"Biodegradation; Phenanthrene; Environmental chemistry; Enrichment culture; Chemistry; Pyrene; Polycyclic aromatic hydrocarbon; Biology; Organic chemistry; Bacteria","score_opus":0.003927279768828506,"score_gpt":0.18147842523546553,"score_spread":0.17755114546663703,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099586826","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99909705,0.00016002111,0.0000029059531,0.00005234489,0.000039934584,0.00022991597,0.00006651885,0.000008326934,0.00034296862],"genre_scores_gemma":[0.9988045,0.00016206162,0.00013679886,0.00026424724,0.000006075366,0.000009438497,0.00048381207,0.0000095392925,0.00012353774],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990928,0.00005575986,0.0002530415,0.00034455437,0.000047189384,0.00020665112],"domain_scores_gemma":[0.9996813,0.00003629479,0.000102026606,0.000114247705,1.7302891e-7,0.000065955996],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006418785,0.0001764832,0.00019245272,0.000032210693,0.00009817123,0.000009433144,0.00005989513,0.00015099159,0.00028584807],"category_scores_gemma":[0.0000026770251,0.00015067104,0.00002401925,0.000067027875,0.00034371074,0.00004587734,0.000063896485,0.000099788514,0.000059476446],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010161355,0.000110459645,0.02960099,0.0000023249809,0.000014190666,7.731642e-7,0.0003489499,0.000045494067,0.9696925,0.000011300371,0.000084127,0.0000787199],"study_design_scores_gemma":[0.0011837756,0.000057335306,0.17075118,0.00001770266,0.00002971398,0.0000293996,0.001048976,0.000010362054,0.82586026,0.0005100945,0.00018887308,0.0003123213],"about_ca_topic_score_codex":0.0001957183,"about_ca_topic_score_gemma":0.00066417974,"teacher_disagreement_score":0.14383225,"about_ca_system_score_codex":0.0001338676,"about_ca_system_score_gemma":0.000004722621,"threshold_uncertainty_score":0.6144186},"labels":[],"label_agreement":null},{"id":"W2099624958","doi":"10.1128/aem.00462-09","title":"Microbial Diversity and Host-Specific Sequences of Canada Goose Feces","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fecal contamination and water quality","field":"Environmental Science","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Environment and Climate Change Canada","funders":"U.S. Environmental Protection Agency","keywords":"Goose; Feces; Biology; Waterfowl; Branta; Host (biology); Zoology; Bacteroidetes; Sewage; Clostridia; Environmental DNA; Fecal coliform; Ecology; Veterinary medicine; 16S ribosomal RNA; Biodiversity; Genetics; Gene; Habitat; Bacteria","score_opus":0.00660907923060843,"score_gpt":0.16071942406509374,"score_spread":0.1541103448344853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099624958","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983683,0.00015981744,0.000012771275,0.00022913527,0.00003278427,0.000098953096,0.000056068995,0.0000061707965,0.0010359624],"genre_scores_gemma":[0.9989675,0.000109429464,0.00012293569,0.00064319035,0.00000811784,9.827237e-7,0.000022930726,0.0000025730615,0.00012229056],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993568,0.000029385586,0.00013453068,0.00025670402,0.00004648521,0.0001761126],"domain_scores_gemma":[0.99977463,0.000021865353,0.00005600369,0.00008052369,5.26223e-7,0.00006642998],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000089185785,0.00011269002,0.00014596805,0.000010757954,0.0002558269,0.0000045007514,0.00009421925,0.00006047961,0.00034887283],"category_scores_gemma":[8.27625e-7,0.00009980122,0.000014638474,0.000024131698,0.00042812497,0.000041440606,0.00035415308,0.00006387072,0.000009094608],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019977771,0.00003548566,0.0248328,0.0000024795977,0.000003864607,0.0000021702358,0.00038321916,0.0000023273258,0.9706203,0.00016986181,0.0004857076,0.0034418406],"study_design_scores_gemma":[0.0006351942,0.00013149028,0.75833696,0.0000033976921,0.000010460715,0.000032103973,0.00042884125,0.000004160075,0.22828697,0.0002602387,0.011605282,0.0002648735],"about_ca_topic_score_codex":0.0099849515,"about_ca_topic_score_gemma":0.0050683287,"teacher_disagreement_score":0.7423333,"about_ca_system_score_codex":0.00008047955,"about_ca_system_score_gemma":0.000003815084,"threshold_uncertainty_score":0.99660766},"labels":[],"label_agreement":null},{"id":"W2099723718","doi":"10.1128/aem.00101-09","title":"Development of <i>cpn60</i> -Based Real-Time Quantitative PCR Assays for the Detection of 14 <i>Campylobacter</i> Species and Application to Screening of Canine Fecal Samples","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":87,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Campylobacter; Biology; Fastidious organism; Campylobacter fetus; Feces; Campylobacter jejuni; Microbiology; GroEL; Polymerase chain reaction; Campylobacter coli; Bacteria; Genetics; Escherichia coli; Gene","score_opus":0.016872225009102505,"score_gpt":0.20762116487207877,"score_spread":0.19074893986297625,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099723718","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99452776,0.00011081243,0.0045709233,0.0001697051,0.000011982346,0.00038425802,0.00017332254,0.000006803322,0.000044439956],"genre_scores_gemma":[0.994375,0.00006864202,0.0051380363,0.00016171293,0.00001892202,0.000026011327,0.00020340603,0.0000011637838,0.000007129629],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992225,0.000036891506,0.0003206177,0.00023207921,0.00003240125,0.00015552124],"domain_scores_gemma":[0.9992567,0.00045420707,0.00019518693,0.000049632064,0.00000872861,0.000035581354],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024746548,0.00012121812,0.00028459943,0.000013314666,0.00009732655,0.0000027353058,0.000092473376,0.00009026739,0.000012194763],"category_scores_gemma":[0.000009759556,0.000054183845,0.000038809503,0.000061020208,0.0002125314,0.000013763496,0.00004199912,0.000038753653,9.4300844e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017339636,0.00004582138,0.0020984923,0.0000064695755,0.0000171146,2.299257e-8,0.00011541628,0.000022553277,0.9468614,0.00017921634,0.000010761361,0.05046936],"study_design_scores_gemma":[0.00031939775,0.00052527833,0.36838174,0.000009583866,0.00002786756,0.0000038500903,0.00057614624,0.000064319094,0.62597233,0.000106613064,0.0038846224,0.00012824616],"about_ca_topic_score_codex":0.000067358495,"about_ca_topic_score_gemma":0.000091993184,"teacher_disagreement_score":0.36628324,"about_ca_system_score_codex":0.000012904741,"about_ca_system_score_gemma":0.000003279517,"threshold_uncertainty_score":0.22095531},"labels":[],"label_agreement":null},{"id":"W2100065707","doi":"10.1128/aem.01562-06","title":"Comparison of Media for the Isolation of <i>Enterobacter sakazakii</i>","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enterobacteriaceae and Cronobacter Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":102,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Trent University","keywords":"Enterobacter; Isolation (microbiology); Microbiology; Biology; Computational biology; Enterobacteriaceae; Escherichia coli; Genetics","score_opus":0.007786255783952092,"score_gpt":0.23625502053723887,"score_spread":0.22846876475328678,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100065707","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997533,0.0004773094,0.0014718161,0.00003289252,0.000041386265,0.00020457174,0.00014553042,0.0000015309986,0.000091921436],"genre_scores_gemma":[0.9985024,0.000094903575,0.0003375411,0.000047981004,0.00006161712,0.00002124002,0.00088669464,0.0000089320765,0.00003872951],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994713,0.000015711195,0.00020157042,0.00015892512,0.0000219526,0.00013051598],"domain_scores_gemma":[0.99972105,0.00003190551,0.00009044159,0.00013841984,0.0000041551357,0.0000140171915],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000060865113,0.00008573531,0.00014043575,0.000014694258,0.00003778663,0.0000035056075,0.00009641146,0.000085755506,0.00001648383],"category_scores_gemma":[0.0000015675867,0.000063174586,0.000046335517,0.000012613266,0.00024844566,0.0000016496668,0.00008840167,0.000036271795,0.000001357611],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012113698,0.00008107863,0.052679103,0.0000126449095,0.000027941098,1.8922641e-8,0.000036903315,0.000006987419,0.94573855,0.00006343405,0.0004117277,0.00082048913],"study_design_scores_gemma":[0.00064909057,0.00017983008,0.043240026,0.0000032909184,0.00002096702,0.000003835204,0.00022190285,0.000010230614,0.9441788,0.000031468313,0.011386835,0.0000736761],"about_ca_topic_score_codex":0.00001264528,"about_ca_topic_score_gemma":0.000024665349,"teacher_disagreement_score":0.010975108,"about_ca_system_score_codex":0.000004680476,"about_ca_system_score_gemma":0.0000039854485,"threshold_uncertainty_score":0.2576185},"labels":[],"label_agreement":null},{"id":"W2100211522","doi":"10.1128/aem.00217-10","title":"Quantitative Fluorescence <i>In Situ</i> Hybridization of Microbial Communities in the Rumens of Cattle Fed Different Diets","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; University of Lethbridge","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; In situ; Rumen; Fluorescence in situ hybridization; Animal science; Food science; Chemistry; Biochemistry; Fermentation","score_opus":0.010452218991672564,"score_gpt":0.1924430534373351,"score_spread":0.18199083444566252,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100211522","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993103,0.000048639053,8.966248e-7,0.00017896645,0.000029296549,0.00016652046,0.00011921767,0.000002265915,0.00014389718],"genre_scores_gemma":[0.9992551,0.000171136,0.00004242246,0.00009949119,0.000008537968,0.000011553284,0.00040881557,6.120506e-7,0.0000023261766],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994728,0.0000832361,0.00018145327,0.000113955924,0.000020880116,0.00012765537],"domain_scores_gemma":[0.9996418,0.00022385098,0.00007566375,0.000043436292,0.0000025249606,0.000012725416],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008724286,0.000083604566,0.000174333,0.000013980706,0.000043912343,0.000002954752,0.00012719075,0.00006484408,0.000043307457],"category_scores_gemma":[0.0000031436948,0.000035415327,0.000023380555,0.000050362978,0.00051434006,0.000017977449,0.000061553685,0.00013311088,0.0000022560994],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007873314,0.0002428323,0.016638938,0.0000054520065,0.0000022820122,2.5976047e-7,0.00041057376,9.697371e-7,0.980579,0.00075623614,0.000017960248,0.0012667724],"study_design_scores_gemma":[0.0003241739,0.00025669025,0.7081012,0.000008314017,0.000003167347,0.0000072956923,0.0030229131,0.0000029748057,0.2876577,0.0003192018,0.00021720224,0.000079152414],"about_ca_topic_score_codex":0.00019645841,"about_ca_topic_score_gemma":0.0013756818,"teacher_disagreement_score":0.6929213,"about_ca_system_score_codex":0.0000055207397,"about_ca_system_score_gemma":0.0000014084977,"threshold_uncertainty_score":0.18951075},"labels":[],"label_agreement":null},{"id":"W2100312372","doi":"10.1128/aem.72.2.1118-1128.2006","title":"Only a Few Fungal Species Dominate Highly Diverse Mycofloras Associated with the Common Reed","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":116,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Deutsche Forschungsgemeinschaft","keywords":"Biology; Phragmites; Species richness; Host (biology); Botany; Rhizome; Internal transcribed spacer; Chytridiomycota; Fungal Diversity; Terminal restriction fragment length polymorphism; Ecology; Wetland; Ribosomal RNA; Restriction fragment length polymorphism; Ascomycota; Polymerase chain reaction; Gene; Genetics","score_opus":0.004191563883108249,"score_gpt":0.14204385838103958,"score_spread":0.13785229449793135,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100312372","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99079686,0.00015114901,6.7832514e-7,0.0005375008,0.000045532994,0.00017291518,0.0016577013,0.000027116712,0.0066105416],"genre_scores_gemma":[0.99338555,0.00011215507,0.000006606555,0.00033209092,0.000097005846,0.0000100752595,0.0037472737,0.0000012978403,0.0023079547],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99934655,0.000047119935,0.000114910246,0.00022227308,0.00003836364,0.00023075423],"domain_scores_gemma":[0.99938184,0.0004659492,0.0000733889,0.000043630385,0.0000020819327,0.00003312389],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00006816447,0.00014863221,0.00015596361,0.000007281652,0.00033196044,0.000029389723,0.00011949222,0.00009289376,0.0017634276],"category_scores_gemma":[0.0000018239645,0.0000499626,0.000036923593,0.000061119266,0.00009477218,0.000032166987,0.000077971265,0.00013973712,0.00029585013],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010314585,0.000085676365,0.025407255,8.245174e-7,0.000024305098,0.000007961894,0.000027224007,0.0000037092866,0.9646923,0.00090211007,0.0070970743,0.0016483904],"study_design_scores_gemma":[0.00052129506,0.00066653435,0.48874366,0.00002428641,0.00011325938,0.00037087442,0.0016970572,0.0000108820905,0.016993383,0.0004021309,0.4898642,0.00059242273],"about_ca_topic_score_codex":0.0004194942,"about_ca_topic_score_gemma":0.0010308736,"teacher_disagreement_score":0.94769895,"about_ca_system_score_codex":0.000026925496,"about_ca_system_score_gemma":0.0000016427948,"threshold_uncertainty_score":0.9991491},"labels":[],"label_agreement":null},{"id":"W2100338956","doi":"10.1128/aem.68.11.5537-5548.2002","title":"Robust Hydrocarbon Degradation and Dynamics of Bacterial Communities during Nutrient-Enhanced Oil Spill Bioremediation","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":496,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Bedford Institute of Oceanography","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Microcosm; Bioremediation; Temperature gradient gel electrophoresis; Nutrient; Biology; Microbial population biology; Environmental chemistry; Biodegradation; Ecology; Bacteria; Chemistry; 16S ribosomal RNA; Contamination","score_opus":0.00806162207951596,"score_gpt":0.1532896805108165,"score_spread":0.14522805843130054,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100338956","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985587,0.00004985222,0.00003640591,0.00009123789,0.00007048552,0.000101962905,0.00011213571,0.0000152581,0.0009639821],"genre_scores_gemma":[0.99741346,0.001460505,0.0002670338,0.00009402195,0.000015559697,0.000003919547,0.00063622155,0.000010576345,0.00009872233],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992869,0.00004158101,0.0002314468,0.00020955058,0.000050599665,0.00017990396],"domain_scores_gemma":[0.9996727,0.000024332574,0.00013347063,0.0001168857,9.768646e-7,0.000051599396],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007650695,0.00015275985,0.00016741463,0.00003563256,0.000087784916,0.0000115517,0.00008006844,0.00011907739,0.0011155683],"category_scores_gemma":[0.000002194661,0.00014439477,0.000020262836,0.0000492869,0.00044400553,0.00006846451,0.0001706805,0.00008791415,0.00004547048],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027065227,0.000063335894,0.0051326468,0.000011143149,0.000007821926,2.2505036e-7,0.0006321566,0.000017724016,0.991006,0.000048794234,0.000024365998,0.0030286834],"study_design_scores_gemma":[0.0041412814,0.00025771934,0.08362507,0.000029940677,0.000061762286,0.000050844243,0.0029467004,0.0015868726,0.9048893,0.0001265731,0.001462564,0.0008213671],"about_ca_topic_score_codex":0.00005940531,"about_ca_topic_score_gemma":0.00018875817,"teacher_disagreement_score":0.08611674,"about_ca_system_score_codex":0.00008837209,"about_ca_system_score_gemma":0.0000010556728,"threshold_uncertainty_score":0.9997975},"labels":[],"label_agreement":null},{"id":"W2100756193","doi":"10.1128/aem.68.5.2576-2579.2002","title":"Efficacy of Common Laboratory Disinfectants on the Infectivity of <i>Cryptosporidium parvum</i> Oocysts in Cell Culture","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Infectivity; Cryptosporidium parvum; Cryptosporidium; Microbiology; Virology; Biology; Disinfectant; Feces; Chemistry; Virus","score_opus":0.004725052072434175,"score_gpt":0.17815255763878263,"score_spread":0.17342750556634845,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100756193","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99571824,0.00084695854,0.0000051508523,0.000028208295,0.000121780926,0.00025342693,0.00023897391,0.00000877558,0.0027784787],"genre_scores_gemma":[0.9992166,0.00046576888,0.000007108993,0.00015958039,0.000009261089,0.000015494163,0.00008064937,0.00000878909,0.000036758494],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99917936,0.000118443546,0.00025872877,0.00021140848,0.000013062017,0.00021898185],"domain_scores_gemma":[0.9992227,0.0004136589,0.00013688921,0.00020922617,0.0000034823452,0.000014030617],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011226434,0.00016559451,0.00030745578,0.000051378865,0.00008046725,0.0000020028867,0.00009165631,0.00024017184,0.00024743864],"category_scores_gemma":[0.000014595163,0.00011837124,0.000044465793,0.0000866868,0.0005944777,0.000017090348,0.00006929596,0.0002561107,0.00010320134],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054172866,0.0010631807,0.040279444,0.00001193628,0.0000316178,0.0000014875325,0.0003379179,0.000017184428,0.956302,0.0008477687,0.00067559077,0.00037773178],"study_design_scores_gemma":[0.0023921523,0.000377472,0.110861234,0.000022459122,0.000037585833,0.000021706022,0.00021145526,0.0000015351443,0.8798613,0.000093817,0.0059229685,0.0001963124],"about_ca_topic_score_codex":0.000027447617,"about_ca_topic_score_gemma":0.0000076023744,"teacher_disagreement_score":0.07644066,"about_ca_system_score_codex":0.000028211822,"about_ca_system_score_gemma":0.000004925489,"threshold_uncertainty_score":0.4827039},"labels":[],"label_agreement":null},{"id":"W2100817153","doi":"10.1128/aem.02788-06","title":"Tracking Host Sources of <i>Cryptosporidium</i> spp. in Raw Water for Improved Health Risk Assessment","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":117,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Agriculture and Agri-Food Canada; Health Canada; Provincial Laboratory of Public Health; University of Calgary","funders":"Agriculture and Agri-Food Canada; Canadian Institutes of Health Research; Genome Alberta; Genome Canada","keywords":"Cryptosporidium; Host (biology); Biology; Tracking (education); Risk assessment; Environmental science; Microbiology; Ecology; Computer science; Feces","score_opus":0.004736417973683414,"score_gpt":0.22562132599620552,"score_spread":0.22088490802252211,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100817153","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937765,0.00074150413,0.0042146044,0.00007492272,0.00023077388,0.00049000484,0.00022736644,0.000013611307,0.00023068873],"genre_scores_gemma":[0.99808383,0.0003449218,0.00059702387,0.000298411,0.00002042864,0.000026334012,0.0005746629,0.00001412009,0.000040290004],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99876124,0.000043971628,0.00041144446,0.0002898247,0.000007584827,0.00048591997],"domain_scores_gemma":[0.9994762,0.00022564348,0.00014075177,0.00012790933,0.0000036546478,0.00002584153],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005262929,0.0001692443,0.00034701635,0.00008717242,0.00016533445,0.0000042922657,0.000070731636,0.0002187981,0.00008913851],"category_scores_gemma":[0.0000059085173,0.00013569364,0.000054290376,0.000029040057,0.000331574,0.000024917483,0.000061986975,0.00020284516,0.000020334035],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007659144,0.00022936425,0.034049172,0.000015985075,0.000049619088,6.077106e-7,0.00028569778,0.000011218822,0.9611201,0.00031216763,0.00008326738,0.0037661607],"study_design_scores_gemma":[0.0033903953,0.00047905257,0.10344094,0.000012620293,0.000033979533,0.00006633141,0.00095338334,0.0000037387229,0.8730992,0.00026707546,0.017999439,0.00025381768],"about_ca_topic_score_codex":0.0001389914,"about_ca_topic_score_gemma":0.000057406876,"teacher_disagreement_score":0.08802092,"about_ca_system_score_codex":0.000070521804,"about_ca_system_score_gemma":0.000015750162,"threshold_uncertainty_score":0.5533426},"labels":[],"label_agreement":null},{"id":"W2101058852","doi":"10.1128/aem.71.10.6126-6133.2005","title":"Genetic Variation of the Bloom-Forming Cyanobacterium<i>Microcystis aeruginosa</i>within and among Lakes: Implications for Harmful Algal Blooms","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Aquatic Ecosystems and Phytoplankton Dynamics","field":"Environmental Science","cited_by":155,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Microcystis aeruginosa; Biology; Bloom; Microcystis; Nutrient; Genetic variation; Phosphorus; Genetic diversity; Species evenness; Cyanobacteria; Ecology; Phytoplankton; Botany; Species diversity; Population; Chemistry; Bacteria; Genetics; Demography","score_opus":0.00352563815011363,"score_gpt":0.1671995181518311,"score_spread":0.16367388000171745,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101058852","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976087,0.00006773884,0.0011540283,0.00012684763,0.000053793035,0.0005363457,0.00026569408,0.000009171371,0.00017768377],"genre_scores_gemma":[0.99682957,0.000045945257,0.002694322,0.00017823008,0.00003949892,0.00006598698,0.00006514353,0.000013636669,0.0000676415],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991423,0.000020793748,0.00030311063,0.00030006564,0.000030325682,0.00020342019],"domain_scores_gemma":[0.9995051,0.000054311207,0.00019525309,0.00019340136,0.000001112933,0.000050815634],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001084555,0.00015246132,0.00017695656,0.000014737542,0.00018650135,0.000011524626,0.00013618814,0.00011153134,0.00007577031],"category_scores_gemma":[0.000002916756,0.00011883741,0.000032952154,0.000038454466,0.0003598971,0.000052767373,0.00017215863,0.000074411015,0.00001216546],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000007929932,0.00003881066,0.11881803,0.0000133104195,0.000017172328,5.125621e-8,0.0005573072,0.00026745524,0.8770476,0.0002634948,0.00003718868,0.002931637],"study_design_scores_gemma":[0.0008121596,0.000070671456,0.97629416,0.000012305145,0.00006610019,0.000095553405,0.00022520448,0.0013795544,0.014917631,0.00043996933,0.005417094,0.00026958738],"about_ca_topic_score_codex":0.00007791498,"about_ca_topic_score_gemma":0.0002520687,"teacher_disagreement_score":0.86213,"about_ca_system_score_codex":0.00005708855,"about_ca_system_score_gemma":0.0000042218494,"threshold_uncertainty_score":0.4846049},"labels":[],"label_agreement":null},{"id":"W2101093259","doi":"10.1128/aem.03065-05","title":"The Cell Lysis Activity of the <i>Streptococcus agalactiae</i> Bacteriophage B30 Endolysin Relies on the Cysteine, Histidine-Dependent Amidohydrolase/Peptidase Domain","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; U.S. Department of Agriculture","keywords":"Lysin; Amidohydrolase; Lysis; Bacteriophage; Biochemistry; Lytic cycle; Cysteine; Biology; Histidine; Microbiology; Chemistry; Enzyme; Escherichia coli; Virology; Gene","score_opus":0.0019544022758793095,"score_gpt":0.14538025482170608,"score_spread":0.14342585254582677,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101093259","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99349856,0.00008448665,0.000016998107,0.0006248895,0.0001715831,0.0005542176,0.00025147927,0.000018372537,0.0047794133],"genre_scores_gemma":[0.9975591,0.00009930618,0.000033595632,0.0003540157,0.000055143708,0.000081542355,0.000036907062,0.000025985131,0.001754416],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99851876,0.00016209441,0.00034222702,0.00047478094,0.000100884994,0.0004012603],"domain_scores_gemma":[0.99881136,0.00023707881,0.00030361305,0.0005974406,0.0000016129701,0.000048872807],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020692931,0.00031435103,0.00025220044,0.000019931696,0.0007723895,0.000044985238,0.0004287525,0.00012744627,0.00046538634],"category_scores_gemma":[0.000003597514,0.00016737486,0.00016773806,0.000098568395,0.0012831562,0.00006825035,0.0004977705,0.00032635612,0.00020999307],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000074240066,0.00021697584,0.00080740073,0.000004278707,0.000023075725,0.0000022943914,0.00008004278,0.00007076162,0.99647063,0.000062947875,0.0013197743,0.0008675609],"study_design_scores_gemma":[0.0005402791,0.00010258619,0.051713094,0.000008536063,0.00005282647,0.000040017705,0.00026611346,0.000006834551,0.9002955,0.000091414026,0.046645064,0.00023771997],"about_ca_topic_score_codex":0.000443913,"about_ca_topic_score_gemma":0.0002784451,"teacher_disagreement_score":0.096175134,"about_ca_system_score_codex":0.00019381978,"about_ca_system_score_gemma":0.0000062844565,"threshold_uncertainty_score":0.6825349},"labels":[],"label_agreement":null},{"id":"W2101134135","doi":"10.1128/aem.03411-13","title":"Multistrain Probiotic Modulation of Intestinal Epithelial Cells' Immune Response to a Double-Stranded RNA Ligand, Poly(I·C)","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lallemand (Canada)","funders":"","keywords":"TLR3; Biology; Immune system; Microbiology; Innate immune system; Interferon; Lactobacillus casei; Toll-like receptor; Bacteria; Virology; Immunology","score_opus":0.010505722187530375,"score_gpt":0.2328573513159221,"score_spread":0.22235162912839174,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101134135","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974522,0.00006391371,0.000685274,0.00068474247,0.000042406286,0.0008979539,0.00007762257,0.000015758102,0.000080120466],"genre_scores_gemma":[0.99614275,0.000042496486,0.0030185368,0.0002802308,0.000038908653,0.00006259764,0.00018806607,0.000016681752,0.0002097132],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987643,0.00007619891,0.00038521676,0.00032727382,0.000044324246,0.00040268616],"domain_scores_gemma":[0.9995152,0.00004026417,0.00007795391,0.00017493307,0.000006785308,0.00018491555],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023378586,0.00017674433,0.000404651,0.00009733748,0.000049976574,0.0000060005573,0.000080211896,0.0001297613,0.00019036703],"category_scores_gemma":[0.000017964214,0.00014978343,0.00006130497,0.00004554833,0.0003813648,0.000028134988,0.000107713815,0.00018236793,0.00015061142],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004477013,0.00015746325,0.0012699561,0.00003220731,0.00003626037,0.00000723335,0.00011371462,0.000011653259,0.9875711,0.000015064956,0.00006931007,0.006239012],"study_design_scores_gemma":[0.006848193,0.0022546311,0.17010278,0.000049355498,0.00002882566,0.00038155852,0.00034899707,0.0001090865,0.8191388,0.00009368568,0.00044907624,0.00019500732],"about_ca_topic_score_codex":0.00016354304,"about_ca_topic_score_gemma":0.0000045301854,"teacher_disagreement_score":0.16883282,"about_ca_system_score_codex":0.000054490498,"about_ca_system_score_gemma":0.000015204467,"threshold_uncertainty_score":0.61079913},"labels":[],"label_agreement":null},{"id":"W2101266397","doi":"10.1128/aem.68.12.5956-5964.2002","title":"Construction and Evaluation of Plasmid Vectors Optimized for Constitutive and Regulated Gene Expression in <i>Burkholderia cepacia</i> Complex Isolates","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":147,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Multiple cloning site; Plasmid; Burkholderia; Burkholderia cepacia complex; Promoter; Cloning vector; Microbiology; Gene; Expression vector; Cloning (programming); Escherichia coli; Gene expression; Genetics; Molecular biology; Molecular cloning; Recombinant DNA; Bacteria","score_opus":0.021118443615737108,"score_gpt":0.2509772108166361,"score_spread":0.22985876720089898,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101266397","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977537,0.0010179902,0.0001581679,0.000044850833,0.000020453752,0.00077445724,0.00010956964,0.000005938405,0.00011486292],"genre_scores_gemma":[0.98602235,0.0005194076,0.013157963,0.000026430382,0.000008581847,0.000043196178,0.00021152594,0.00000654886,0.000003979077],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999368,0.000035172405,0.00017837493,0.00023957537,0.000040661744,0.00013823267],"domain_scores_gemma":[0.9997222,0.00009616747,0.00006433247,0.00006376619,0.0000066624643,0.0000468813],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012529013,0.00010237056,0.0002467189,0.00006200286,0.000049191545,0.000003854769,0.000016221255,0.000075013464,0.00010217644],"category_scores_gemma":[0.000016444797,0.0000898501,0.000012885876,0.000028981198,0.00080996857,0.000030807507,0.000042481643,0.000057243287,7.229967e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000413387,0.00005078415,0.0030619102,0.00003065544,0.000020653006,3.460496e-7,0.00014713392,0.000043177875,0.99363905,0.00003103207,0.000031632186,0.0025302598],"study_design_scores_gemma":[0.010812752,0.00036478657,0.016811654,0.00005544262,0.0000820202,0.00021127332,0.0006876947,0.0045003924,0.96552813,0.00033926783,0.00045767496,0.00014890199],"about_ca_topic_score_codex":0.000004709359,"about_ca_topic_score_gemma":0.0000016768009,"teacher_disagreement_score":0.028110888,"about_ca_system_score_codex":0.000041151456,"about_ca_system_score_gemma":0.0000058804876,"threshold_uncertainty_score":0.36639807},"labels":[],"label_agreement":null},{"id":"W2101457475","doi":"10.1128/aem.67.7.2993-3001.2001","title":"Chlorine Dioxide Inactivation of <i>Cryptosporidium parvum</i> Oocysts and Bacterial Spore Indicators","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":126,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Cryptosporidium parvum; Chlorine dioxide; Disinfectant; Infectivity; Spore; Microbiology; Chlorine; Biology; Cryptosporidium; Food science; Chemistry; Feces","score_opus":0.003108270770414932,"score_gpt":0.17250346371297218,"score_spread":0.16939519294255725,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101457475","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982885,0.00036143418,0.000065956294,0.00003268112,0.00025520514,0.00017126845,0.00010501181,0.000018360837,0.0007015595],"genre_scores_gemma":[0.99813527,0.00087620376,0.000060316368,0.00008471016,0.000042005646,0.000017820634,0.0006835446,0.000011094483,0.00008903931],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99923146,0.000027956872,0.00023775488,0.000259777,0.000010101479,0.00023295093],"domain_scores_gemma":[0.9996394,0.00008648881,0.00012037727,0.0001241632,0.000002535306,0.000027070031],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007721226,0.00016374941,0.00026150607,0.00009073771,0.000110320885,0.0000035052826,0.00005368444,0.00023928517,0.0002857453],"category_scores_gemma":[0.0000075523735,0.00015010523,0.000026254698,0.00005929176,0.0005258112,0.000037171292,0.000090030946,0.00013487645,0.000043885437],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017611255,0.00012318383,0.031274267,0.000007355578,0.000055511424,0.000002747491,0.00009727595,9.306921e-7,0.9639774,0.0009524193,0.00012981241,0.0032029995],"study_design_scores_gemma":[0.0019609479,0.00021359764,0.18102942,0.00000968184,0.000057118963,0.00047900615,0.0003107311,2.3729808e-7,0.7597767,0.0001482005,0.055774424,0.00023993474],"about_ca_topic_score_codex":0.000036594058,"about_ca_topic_score_gemma":0.0000033760102,"teacher_disagreement_score":0.20420069,"about_ca_system_score_codex":0.000027991817,"about_ca_system_score_gemma":0.00000891855,"threshold_uncertainty_score":0.6121114},"labels":[],"label_agreement":null},{"id":"W2101559941","doi":"10.1128/aem.00251-12","title":"Detection of Human Food-Borne and Zoonotic Viruses on Irrigated, Field-Grown Strawberries","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":150,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut de Recherche et de Développement en Agroenvironnement; Agriculture and Agri-Food Canada","funders":"","keywords":"Norovirus; Biology; Virology; Hepatitis a virus; Rotavirus; Food microbiology; Contamination; Food contaminant; Virus; Microbiology; Veterinary medicine; Food science; Bacteria; Medicine; Ecology","score_opus":0.016999024695106467,"score_gpt":0.2525553698917852,"score_spread":0.2355563451966787,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101559941","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99870044,0.0004651026,0.00002534167,0.00011280427,0.00003492696,0.0001682083,0.000031701467,0.000010393486,0.00045110888],"genre_scores_gemma":[0.9987756,0.00017092578,0.00007495896,0.0008229843,0.000050915874,0.000013706622,0.000057563695,0.000009315299,0.000024029987],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993009,0.000036879876,0.0001736363,0.0001730075,0.000024372832,0.00029122233],"domain_scores_gemma":[0.99971265,0.000029514293,0.000045846315,0.000096109325,0.0000013533448,0.000114520226],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009158067,0.00011484409,0.0002522511,0.000049202154,0.00006658546,0.0000023711177,0.000028188973,0.00011695182,0.00008134833],"category_scores_gemma":[0.000009696239,0.00009483001,0.000027805738,0.000016667958,0.0003604311,0.00002634426,0.00006188185,0.00015027302,0.000012286493],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018549865,0.00009816374,0.045926478,0.000027144795,0.000048929578,7.4150756e-7,0.000058449517,2.1271991e-7,0.9505445,0.00025016526,0.00008437561,0.0027753352],"study_design_scores_gemma":[0.00208589,0.006255467,0.3286418,0.000032979675,0.00006335652,0.000338602,0.00056998513,0.000003097913,0.6584414,0.000261077,0.0031353284,0.00017099813],"about_ca_topic_score_codex":0.000029280078,"about_ca_topic_score_gemma":0.00001184608,"teacher_disagreement_score":0.29210308,"about_ca_system_score_codex":0.000020328458,"about_ca_system_score_gemma":0.0000020342002,"threshold_uncertainty_score":0.38670555},"labels":[],"label_agreement":null},{"id":"W2101655388","doi":"10.1128/aem.02317-08","title":"Phylogenetic Analysis Indicates Evolutionary Diversity and Environmental Segregation of Marine Podovirus DNA Polymerase Gene Sequences","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Phylogenetic tree; Metagenomics; Genetic diversity; Polymerase chain reaction; Environmental DNA; Genetics; Gene; Phylogenetics; Phylogenetic diversity; DNA polymerase; DNA sequencing; Evolutionary biology; Ecology; Biodiversity","score_opus":0.004189847144358045,"score_gpt":0.17169545106381087,"score_spread":0.16750560391945282,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101655388","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99896544,0.00022830543,0.000042549786,0.00007553366,0.000022927752,0.00015484444,0.00028506815,0.000010864837,0.00021445748],"genre_scores_gemma":[0.99780416,0.0005433872,0.0006658725,0.0002739253,0.000012026429,0.0000041538124,0.000607629,0.000006102603,0.0000827126],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990551,0.000034787,0.00021945949,0.00041714028,0.000052461844,0.00022104006],"domain_scores_gemma":[0.99961233,0.000024558347,0.00013454081,0.00014123849,4.1471478e-7,0.00008690275],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000054426273,0.00018882634,0.00023986393,0.00008003351,0.00037583656,0.000007097401,0.00011530212,0.00011214066,0.0013922564],"category_scores_gemma":[9.293856e-7,0.00018213663,0.000064629974,0.00010014097,0.00069477555,0.00008344694,0.0007101358,0.00009507962,0.000031671607],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003085452,0.00013350781,0.11171669,0.0000016177992,0.000085194435,0.0000024195706,0.00023069105,0.00004108183,0.88121367,0.00001104879,0.000015674468,0.0065175565],"study_design_scores_gemma":[0.0003114825,0.00011794753,0.8557708,0.0000012717711,0.00020756047,0.00006591953,0.0001959046,0.00003978332,0.1427515,0.00018056529,0.00017116436,0.00018604576],"about_ca_topic_score_codex":0.0003300934,"about_ca_topic_score_gemma":0.000029226188,"teacher_disagreement_score":0.74405414,"about_ca_system_score_codex":0.000095459625,"about_ca_system_score_gemma":0.0000020071304,"threshold_uncertainty_score":0.9995206},"labels":[],"label_agreement":null},{"id":"W2101961425","doi":"10.1128/aem.01343-09","title":"Effect of Carbohydrate Composition in Barley and Oat Cultivars on Microbial Ecophysiology and Proliferation of <i>Salmonella enterica</i> in an In Vitro Model of the Porcine Gastrointestinal Tract","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome Prairie; University of Saskatchewan","funders":"","keywords":"Salmonella enterica; Biology; Gastrointestinal tract; Salmonella; Ecophysiology; In vitro; Carbohydrate; Microbiology; Botany; Biochemistry; Bacteria","score_opus":0.004088359913183572,"score_gpt":0.17443401949564563,"score_spread":0.17034565958246206,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101961425","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995689,0.000027219461,8.6753545e-7,0.000058287613,0.000005413431,0.0002593255,0.00006744337,0.0000012431361,0.000011322499],"genre_scores_gemma":[0.9997422,0.000038167414,0.000053061474,0.000054113043,0.000004734527,0.0000033402637,0.000103201935,7.3145986e-7,4.2767564e-7],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99939376,0.000078479796,0.00021205697,0.0001844433,0.000016832426,0.00011445232],"domain_scores_gemma":[0.9998286,0.000035381418,0.00008674817,0.00003046236,0.0000012815159,0.00001756442],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009325631,0.00010148784,0.00023029967,0.000019974425,0.000016791977,0.0000020470115,0.000049235114,0.000062126106,0.0000011448274],"category_scores_gemma":[0.0000010416411,0.000045864836,0.000016232194,0.000045191147,0.00015936088,0.000020129062,0.000035435045,0.000086723994,6.191218e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00058473565,0.00024974276,0.028243825,0.000009292805,0.0000010920438,4.549609e-7,0.0000593575,0.00021387431,0.9689726,0.000017060207,2.173953e-7,0.0016477169],"study_design_scores_gemma":[0.00069619715,0.0015841745,0.29052562,0.000028891918,0.00000431023,0.0000137029065,0.000029636416,0.0008675606,0.7061114,0.00008107235,2.1536648e-7,0.00005726782],"about_ca_topic_score_codex":0.000028241077,"about_ca_topic_score_gemma":0.00002056715,"teacher_disagreement_score":0.26286128,"about_ca_system_score_codex":0.000014095227,"about_ca_system_score_gemma":0.0000014177124,"threshold_uncertainty_score":0.18703137},"labels":[],"label_agreement":null},{"id":"W2101968700","doi":"10.1128/aem.70.10.5891-5897.2004","title":"Expression of an Exogenous 1-Aminocyclopropane-1-Carboxylate Deaminase Gene in <i>Sinorhizobium meliloti</i> Increases Its Ability To Nodulate Alfalfa","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":176,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"","keywords":"Sinorhizobium meliloti; Biology; Rhizobium leguminosarum; Medicago sativa; Rhizobia; Rhizobiaceae; Operon; Gene; Microbiology; Biochemistry; Nitrogen fixation; Botany; Genetics; Mutant; Symbiosis; Bacteria","score_opus":0.0060034298007344165,"score_gpt":0.17114303113951254,"score_spread":0.1651396013387781,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101968700","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987968,0.0002766055,3.04032e-7,0.00006902418,0.00003317769,0.00043622436,0.00031493278,0.000027436521,0.00004548703],"genre_scores_gemma":[0.998719,0.00004583124,0.0004622978,0.00030119938,0.000045047767,0.000032729644,0.00038434193,0.00000377949,0.0000058164546],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985422,0.000071991984,0.00033743327,0.0005920596,0.00006416534,0.00039213858],"domain_scores_gemma":[0.99956626,0.000050371047,0.000096969576,0.00012369298,0.000004730767,0.00015796238],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001544126,0.0002452332,0.00032513682,0.000026046933,0.00010109816,0.00001023603,0.00022329434,0.00018375531,0.000073786134],"category_scores_gemma":[0.000006704007,0.00012529393,0.00004931247,0.00011766241,0.00015974532,0.000069020105,0.00023439503,0.00011093642,0.000038251237],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010688312,0.00046747626,0.0042703827,0.000008303416,0.0000052462624,0.000009184498,0.00013363585,0.0000101157775,0.9920775,0.000009561264,0.0000018066,0.002899851],"study_design_scores_gemma":[0.0004661215,0.00033629165,0.099962205,0.000010943691,0.0000115332605,0.0000427386,0.00015382463,3.4749752e-7,0.89857197,0.000121460704,0.0000911153,0.00023142876],"about_ca_topic_score_codex":0.0007473123,"about_ca_topic_score_gemma":0.0002333155,"teacher_disagreement_score":0.09569182,"about_ca_system_score_codex":0.00008558709,"about_ca_system_score_gemma":0.000005470168,"threshold_uncertainty_score":0.5109338},"labels":[],"label_agreement":null},{"id":"W2102141071","doi":"10.1128/aem.01225-07","title":"Different Genotypes of Anatoxin-Producing Cyanobacteria Coexist in the Tarn River, France","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Aquatic Ecosystems and Phytoplankton Dynamics","field":"Environmental Science","cited_by":140,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centre National de la Recherche Scientifique; Agence Française de Sécurité Sanitaire de l'Environnement et du Travail; Institut national de la recherche scientifique","keywords":"Cyanobacteria; Oscillatoria; Biology; Axenic; Genus; Botany; Genotype; Bacteria; Genetics; Gene","score_opus":0.0032625235472333253,"score_gpt":0.17674655525007096,"score_spread":0.17348403170283763,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102141071","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978959,0.00012156819,0.00023814925,0.000027137436,0.000069214155,0.00022892193,0.00004782629,0.0000047706785,0.001366534],"genre_scores_gemma":[0.9992335,0.00006650483,0.00035951822,0.00019389502,0.000021759957,0.0000067903493,0.000072860516,0.000008149239,0.000037028596],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991244,0.000032145388,0.00026415635,0.0002800495,0.000052261297,0.00024699589],"domain_scores_gemma":[0.9995926,0.00007068082,0.000102072125,0.0002024891,3.3360254e-7,0.00003180249],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002873096,0.00014204664,0.00019774727,0.000020146717,0.00006858333,0.0000044930102,0.00017517702,0.00008270555,0.00019734999],"category_scores_gemma":[0.0000018171767,0.000099488876,0.000025523874,0.000052552583,0.00040496013,0.00002354192,0.00012256601,0.00011332598,0.00004389687],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019195151,0.000085566055,0.22727959,0.000010230716,0.0000075831967,0.000003136449,0.0013013494,0.00003173629,0.76860845,0.000437844,0.000027119633,0.0021882085],"study_design_scores_gemma":[0.00050205196,0.000077242854,0.97322863,0.000008319795,0.00001122833,0.000044345623,0.000695538,0.0000408397,0.02004612,0.00054606324,0.004592659,0.00020693774],"about_ca_topic_score_codex":0.00021548338,"about_ca_topic_score_gemma":0.00026039762,"teacher_disagreement_score":0.74856234,"about_ca_system_score_codex":0.00005126313,"about_ca_system_score_gemma":0.0000012734498,"threshold_uncertainty_score":0.40570387},"labels":[],"label_agreement":null},{"id":"W2102220938","doi":"10.1128/aem.02220-07","title":"Improvement of the Thermostability and Activity of a Pectate Lyase by Single Amino Acid Substitutions, Using a Strategy Based on Melting-Temperature-Guided Sequence Alignment","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Biotechnology Research Institute","funders":"Natural Resources Canada","keywords":"Thermostability; Pectate lyase; Thermophile; Directed evolution; Mutagenesis; Biology; Amino acid; Biochemistry; Mesophile; Enzyme; Peptide sequence; Mutation; Gene; Genetics; Bacteria; Mutant","score_opus":0.01100165582583951,"score_gpt":0.2162700569711652,"score_spread":0.20526840114532569,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102220938","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.999149,0.00008392883,0.00031949286,0.00003469127,0.000029673925,0.00021683321,0.00013674895,0.0000022341812,0.00002738548],"genre_scores_gemma":[0.99958646,0.00003265671,0.0000741137,0.0001254378,0.000012504853,0.000004487908,0.00014769123,0.0000059049758,0.000010766429],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994202,0.000027916258,0.0001561998,0.00024915102,0.000032502256,0.00011397892],"domain_scores_gemma":[0.9996827,0.0000063280454,0.000121719204,0.00015927396,0.0000046245536,0.000025334646],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001334061,0.00010588992,0.000102789796,0.00001231758,0.00006556337,0.0000035008131,0.000045874378,0.00008793468,0.00000845253],"category_scores_gemma":[0.0000040438977,0.000082239385,0.000024011999,0.000025490916,0.0003144331,0.0000026644752,0.000052981886,0.000049322505,1.1963971e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000093954084,0.00017441848,0.0017134026,0.000016589214,0.000013012269,1.0061694e-7,0.000029005372,0.00003472806,0.9969588,0.000010742624,0.0000039752967,0.0009512769],"study_design_scores_gemma":[0.0003831241,0.00018970069,0.0054947534,0.0000049038285,0.000012245681,0.000007130251,0.000090829984,0.000021009007,0.99360406,0.0000045655547,0.0001091186,0.000078530036],"about_ca_topic_score_codex":0.000013549601,"about_ca_topic_score_gemma":0.000004136376,"teacher_disagreement_score":0.0037813508,"about_ca_system_score_codex":0.000029533789,"about_ca_system_score_gemma":0.000012439991,"threshold_uncertainty_score":0.3353625},"labels":[],"label_agreement":null},{"id":"W2102256624","doi":"10.1128/aem.66.4.1580-1586.2000","title":"Role of Molybdate and Other Transition Metals in the Accumulation of Protochelin by <i>Azotobacter vinelandii</i>","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Geochemistry and Elemental Analysis","field":"Earth and Planetary Sciences","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Siderophore; Molybdate; Azotobacter vinelandii; Chemistry; Ferric; Sodium molybdate; Inorganic chemistry; Tungstate; Vanadate; Biochemistry; Nitrogenase; Organic chemistry","score_opus":0.005720992463703402,"score_gpt":0.17972993416044308,"score_spread":0.1740089416967397,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102256624","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985393,0.00022865694,0.0000025741438,0.000030405277,0.0000012947396,0.0002029426,0.00031934868,0.0000011749775,0.0006742472],"genre_scores_gemma":[0.9991621,0.00006516883,0.000027850685,0.00017143498,0.0000037917382,0.000005278545,0.0005512291,9.541054e-7,0.000012201906],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996282,0.000025293857,0.00013602489,0.00011054089,0.000022160015,0.00007781389],"domain_scores_gemma":[0.9998871,0.000016554788,0.00003499502,0.0000486649,3.375174e-7,0.000012340731],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000091908485,0.00006191465,0.000105088475,0.000011780552,0.000022645818,0.0000028176814,0.000041771436,0.000042477965,0.0014976974],"category_scores_gemma":[1.8477803e-7,0.00004159943,0.000016081727,0.000028112447,0.000112264555,0.00002036398,0.0000031611416,0.00003542754,0.0000067353126],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049273436,0.0000347561,0.054993067,0.000009127503,0.0000152186085,1.0739808e-7,0.0003901988,0.00016783147,0.93764436,0.000002280693,0.00000792131,0.0066858507],"study_design_scores_gemma":[0.0023097731,0.00032464872,0.42472726,0.00001991176,0.00014368219,0.000053442436,0.003873265,0.0013640263,0.5536673,0.0011024117,0.01200629,0.00040799353],"about_ca_topic_score_codex":0.00029863612,"about_ca_topic_score_gemma":0.000054063454,"teacher_disagreement_score":0.38397706,"about_ca_system_score_codex":8.0705234e-7,"about_ca_system_score_gemma":7.973076e-7,"threshold_uncertainty_score":0.99941504},"labels":[],"label_agreement":null},{"id":"W2102411006","doi":"10.1128/aem.06645-11","title":"The Composition of Camembert Cheese-Ripening Cultures Modulates both Mycelial Growth and Appearance","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Dairy Farmers of Canada","keywords":"Debaryomyces hansenii; Geotrichum; Ripening; Kluyveromyces lactis; Biology; Cheese ripening; Mycelium; Agar; Yeast; Penicillium; Food science; Petri dish; Botany; Microbiology; Bacteria; Biochemistry; Saccharomyces cerevisiae","score_opus":0.004102665028613873,"score_gpt":0.1657096399624098,"score_spread":0.16160697493379594,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102411006","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997572,0.0017505895,0.0000016678334,0.00012968825,0.000042070897,0.000113457034,0.00004120391,0.000007373708,0.00034196483],"genre_scores_gemma":[0.9990196,0.00066384295,0.000039913317,0.00010560754,0.000064835265,0.0000055028604,0.00008396383,8.8200056e-7,0.000015843854],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999499,0.000019582783,0.00011568863,0.00013459858,0.00002327904,0.0002078074],"domain_scores_gemma":[0.99984664,0.000027000318,0.000054940825,0.000025958201,0.0000011180493,0.00004434853],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007279183,0.000097278324,0.00011078295,0.0000031919283,0.00021905721,0.000012141821,0.0000671402,0.00007839375,0.000012725489],"category_scores_gemma":[8.377009e-7,0.000035650362,0.000021400845,0.000023447332,0.00028458016,0.000031308176,0.00009180142,0.000070115166,0.0000032870885],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024619216,0.000037810183,0.006938275,0.0000036756314,0.00001274896,7.144299e-8,0.000096803415,5.301975e-7,0.9888778,0.0007783666,0.000024361194,0.003204939],"study_design_scores_gemma":[0.0004945724,0.00024704653,0.5908265,0.000017482907,0.000032972115,0.00006865076,0.0009626775,0.000026275517,0.39980367,0.0004315098,0.0067685065,0.0003201188],"about_ca_topic_score_codex":0.000023081082,"about_ca_topic_score_gemma":0.0000035535747,"teacher_disagreement_score":0.58907413,"about_ca_system_score_codex":0.0000060628104,"about_ca_system_score_gemma":4.5962105e-7,"threshold_uncertainty_score":0.1684833},"labels":[],"label_agreement":null},{"id":"W2102672684","doi":"10.1128/aem.05879-11","title":"Molecular Enumeration of an Ecologically Important Cyanophage in a Laurentian Great Lake","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Environment and Climate Change Canada","funders":"","keywords":"Enumeration; Biology; Ecology; Computational biology; Evolutionary biology; Mathematics","score_opus":0.005486009823583114,"score_gpt":0.17770766416371256,"score_spread":0.17222165434012945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102672684","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968116,0.000031780477,0.000026799455,0.000010345407,0.000039309012,0.00017981794,0.00006616769,0.000009382295,0.0028247708],"genre_scores_gemma":[0.9983946,0.000053461456,0.0010396924,0.00017414473,0.0000052446308,0.000017356226,0.00026445414,0.000009532512,0.000041507006],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992042,0.00003140778,0.00025349957,0.00029589268,0.000021189375,0.0001937944],"domain_scores_gemma":[0.9997172,0.000006529764,0.00008671782,0.0001355912,4.647212e-7,0.00005351405],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00006987504,0.0001301442,0.00016059648,0.000028797209,0.000040276755,0.000004872004,0.00009951455,0.0001122911,0.007292002],"category_scores_gemma":[9.903264e-7,0.000117550335,0.00003066775,0.00004047984,0.00025878474,0.00008094736,0.00012603248,0.00009573236,0.000060334503],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030631556,0.00021699279,0.007769412,0.0000020919827,0.0000076832675,0.000016450536,0.00033881658,0.0000076202023,0.98924613,0.00007128463,0.000016884682,0.0022760313],"study_design_scores_gemma":[0.0009863054,0.00047202848,0.47481358,0.0000062838913,0.000033812634,0.00016725756,0.0004109436,0.000033894135,0.5163468,0.0004278988,0.0059284554,0.00037272487],"about_ca_topic_score_codex":0.00011548944,"about_ca_topic_score_gemma":0.001323942,"teacher_disagreement_score":0.4728993,"about_ca_system_score_codex":0.000032557436,"about_ca_system_score_gemma":0.0000019536506,"threshold_uncertainty_score":0.99361545},"labels":[],"label_agreement":null},{"id":"W2102783366","doi":"10.1128/aem.00239-15","title":"Polyphenolic Extract from Maple Syrup Potentiates Antibiotic Susceptibility and Reduces Biofilm Formation of Pathogenic Bacteria","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant-Derived Bioactive Compounds","field":"Chemistry","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Biofilm; Microbiology; Antibiotics; Bacteria; Efflux; Antimicrobial; Pseudomonas aeruginosa; Escherichia coli; Biology; Chemistry; Antibiosis; Pathogenic bacteria; Biochemistry; Gene","score_opus":0.011793016267793959,"score_gpt":0.18865671320322824,"score_spread":0.17686369693543427,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102783366","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99768835,0.00068273273,0.000015783437,0.000020638001,0.000043635042,0.000082543585,0.0011446327,0.000020689144,0.00030101783],"genre_scores_gemma":[0.9973916,0.00022294659,0.00048283915,0.000026886377,0.000036554364,0.000002700712,0.0018044363,0.000012535066,0.000019508185],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991441,0.000024073439,0.00024284252,0.0003400836,0.000035661742,0.00021328303],"domain_scores_gemma":[0.9995433,0.000042477597,0.00015041918,0.00017350249,0.000003156725,0.000087106855],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007078052,0.00018639695,0.00025585087,0.000029652252,0.000052506806,0.000014345103,0.000100436446,0.00017817828,0.0001614927],"category_scores_gemma":[0.000004042572,0.00017091053,0.0000307148,0.00002029989,0.0003731037,0.000079795864,0.0001639019,0.000100136516,0.00001872557],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009214024,0.0000803315,0.0063125542,0.000023554017,0.000036998605,0.0000014948687,0.0002906157,3.321454e-7,0.9908437,0.0000056281815,0.000032153042,0.0022805117],"study_design_scores_gemma":[0.00069595734,0.000045602745,0.020101609,0.0000107745145,0.00003902931,0.00006953434,0.001455713,0.000019940797,0.9768477,0.00016532911,0.00036303935,0.00018578663],"about_ca_topic_score_codex":0.00006846571,"about_ca_topic_score_gemma":0.00000868609,"teacher_disagreement_score":0.013996002,"about_ca_system_score_codex":0.000056773966,"about_ca_system_score_gemma":0.00000897772,"threshold_uncertainty_score":0.69695294},"labels":[],"label_agreement":null},{"id":"W2102884852","doi":"10.1128/aem.01445-06","title":"Occurrence of Virulence and Antimicrobial Resistance Genes in <i>Escherichia coli</i> Isolates from Different Aquatic Ecosystems within the St. Clair River and Detroit River Areas","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":152,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Environment and Climate Change Canada; Université de Montréal; Biotechnology Research Institute","funders":"Canadian Water Network","keywords":"Escherichia coli; Virulence; Aquatic ecosystem; Biology; Antibiotic resistance; Microbiology; Effluent; Antimicrobial; Freshwater ecosystem; Surface water; Estuary; Ecosystem; Gene; Ecology; Genetics; Antibiotics; Environmental engineering; Environmental science","score_opus":0.004950567124237624,"score_gpt":0.19514504280577308,"score_spread":0.19019447568153544,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102884852","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99333215,0.005766387,0.000091577225,0.000040753675,0.00003925551,0.0003066365,0.00038796774,0.0000034188004,0.000031882428],"genre_scores_gemma":[0.9964058,0.002885122,0.00029171974,0.00015915057,0.000026265181,0.000017385813,0.00018585277,0.000008379079,0.000020349024],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989142,0.000069376605,0.0002628317,0.00043103425,0.00004000588,0.00028258533],"domain_scores_gemma":[0.9995552,0.00009000326,0.00011775577,0.00017600095,0.0000036148397,0.00005745376],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020029387,0.0002043737,0.00025811684,0.000026427851,0.000103577884,0.000009954202,0.0001317479,0.00013419532,0.0000054113284],"category_scores_gemma":[0.000009716197,0.00015349728,0.000023360379,0.00003806696,0.0011503127,0.000004824029,0.00031833656,0.00013846763,0.0000015862208],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015725006,0.000055826375,0.07416552,0.000030873893,0.000051686013,0.0000014050394,0.0003187673,0.0000014422307,0.92476845,0.00002525157,0.00013501936,0.00028853002],"study_design_scores_gemma":[0.00239959,0.00030938096,0.2098604,0.00007949033,0.000064298336,0.00002082479,0.0011098578,0.000065743356,0.78022915,0.00022005531,0.0050496226,0.000591585],"about_ca_topic_score_codex":0.00011106584,"about_ca_topic_score_gemma":0.0011525262,"teacher_disagreement_score":0.14453927,"about_ca_system_score_codex":0.000020316553,"about_ca_system_score_gemma":0.000010772792,"threshold_uncertainty_score":0.6259437},"labels":[],"label_agreement":null},{"id":"W2103062673","doi":"10.1128/aem.72.2.1394-1401.2006","title":"The Thin Pili of <i>Acinetobacter</i> sp. Strain BD413 Mediate Adhesion to Biotic and Abiotic Surfaces","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Deutsche Forschungsgemeinschaft; University of Manitoba; Adobe Systems","keywords":"Pilus; Pilin; Biology; Biofilm; Microbiology; Fimbriae Proteins; Acinetobacter; Plasmid; Bacterial adhesin; Escherichia coli; Bacteria; Cell biology; Gene; Genetics","score_opus":0.0026346660345491755,"score_gpt":0.16284503284433832,"score_spread":0.16021036680978915,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103062673","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985351,0.00072746916,0.0000044363433,0.00021866991,0.000085301035,0.00017852001,0.00014277293,0.0000046089667,0.000103153274],"genre_scores_gemma":[0.9985224,0.00053056533,0.00024249812,0.00022120972,0.00007703602,0.00000204642,0.0003220069,0.00001286466,0.000069382695],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99921155,0.00003164699,0.00020343829,0.0002972573,0.000024682688,0.00023143133],"domain_scores_gemma":[0.99970084,0.00002357766,0.000069683214,0.00015339343,0.0000024305884,0.00005005992],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000116325784,0.00015689289,0.00016019825,0.000016169759,0.00011421301,0.000015080191,0.00007432682,0.0001432878,0.0000062352324],"category_scores_gemma":[0.000002932371,0.000112943286,0.000026988426,0.000023048135,0.00033699095,0.0000020755506,0.00015110626,0.00005483375,0.0000057650914],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005831259,0.000025267826,0.0017087485,0.0000076869965,0.000015395015,5.073199e-7,0.000028107464,0.0000060552566,0.996158,0.00006345597,0.00017199582,0.0017564567],"study_design_scores_gemma":[0.00043718153,0.0002512568,0.03902444,0.0000066282,0.00001856258,0.00003240657,0.00015785862,0.000003940206,0.94457144,0.000041674804,0.015273441,0.00018119461],"about_ca_topic_score_codex":0.000033874236,"about_ca_topic_score_gemma":0.000049246322,"teacher_disagreement_score":0.051586594,"about_ca_system_score_codex":0.000006794892,"about_ca_system_score_gemma":0.000005850036,"threshold_uncertainty_score":0.46056935},"labels":[],"label_agreement":null},{"id":"W2103183006","doi":"10.1128/aem.69.6.3085-3092.2003","title":"Characterization of Hydrocarbon-Degrading Microbial Populations in Contaminated and Pristine Alpine Soils","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":451,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Biotechnology Research Institute","funders":"","keywords":"AlkB; Pseudomonas putida; Rhodococcus; Acinetobacter; Biology; Bacteria; Soil contamination; Microbiology; Microorganism; Contamination; Environmental chemistry; Chemistry; Gene; Ecology; Biochemistry","score_opus":0.008118963309509576,"score_gpt":0.18461026786837625,"score_spread":0.1764913045588667,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103183006","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99905485,0.00002759751,0.00003804319,0.000040802348,0.000049239556,0.00023237332,0.00006268714,0.000008168804,0.00048622288],"genre_scores_gemma":[0.9989985,0.00010675431,0.00035043067,0.00014123936,0.0000059986414,0.000003988281,0.00032033696,0.0000091093425,0.00006359378],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991942,0.000034922483,0.00027428972,0.00027766588,0.000029400204,0.00018949616],"domain_scores_gemma":[0.9997502,0.000011427768,0.00010917449,0.00008013561,6.5171866e-7,0.000048442293],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011509142,0.00013859115,0.0001905264,0.000044672786,0.000050648025,0.0000057594075,0.00004724872,0.000111858826,0.00035819234],"category_scores_gemma":[0.0000045823717,0.00013252867,0.000015427784,0.00008265695,0.00028708886,0.000044925415,0.000065529566,0.00007580693,0.000021054084],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012266229,0.000060031318,0.1024308,0.000004583622,0.0000035779817,7.0078937e-7,0.00013825817,0.000002069841,0.8965724,0.00012941325,0.0000112843145,0.000634604],"study_design_scores_gemma":[0.0012150179,0.000056763754,0.45832977,0.000009495379,0.000013711204,0.00004200518,0.00008965311,0.00003880882,0.5377817,0.00008372861,0.0021023115,0.00023702865],"about_ca_topic_score_codex":0.0000425984,"about_ca_topic_score_gemma":0.00006468092,"teacher_disagreement_score":0.35879073,"about_ca_system_score_codex":0.000052550487,"about_ca_system_score_gemma":0.000002774112,"threshold_uncertainty_score":0.54043627},"labels":[],"label_agreement":null},{"id":"W2103381502","doi":"10.1128/aem.03555-13","title":"Thermoanaerobacterthermohydrosulfuricus WC1 Shows Protein Complement Stability during Fermentation of Key Lignocellulose-Derived Substrates","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Cellobiose; Clostridium thermocellum; Bioprocess; Biochemistry; Fermentation; Metabolic engineering; Biology; Lignocellulosic biomass; Metabolic flux analysis; Catabolite repression; Proteome; Metabolic network; Flux (metallurgy); Proteomics; Computational biology; Chemistry; Metabolism; Gene; Cellulase; Cellulose; Mutant","score_opus":0.006058862508813978,"score_gpt":0.15067115176548665,"score_spread":0.14461228925667266,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103381502","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99887085,0.00014247728,0.000015549116,0.000033152264,0.000048046684,0.00060867984,0.000039306535,0.00005415734,0.00018779917],"genre_scores_gemma":[0.9995093,0.000064928645,0.00016624479,0.000019265626,0.000019390907,0.00005270997,0.000129766,0.000015171467,0.000023256365],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99932253,0.000019511323,0.00022237316,0.00021805537,0.000030525713,0.0001870011],"domain_scores_gemma":[0.99977916,0.000004320487,0.000046929013,0.00012330385,0.000002475831,0.0000438042],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000042259042,0.00015516976,0.00015509948,0.00002925187,0.00005539972,0.000009340499,0.00006371931,0.000085860614,0.0010473246],"category_scores_gemma":[2.9815374e-7,0.00013649646,0.000028055043,0.000026959728,0.00016828658,0.000051405026,0.000045759163,0.000078297875,0.00005379385],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012596292,0.00004572216,0.0015569573,0.00009272587,0.000027880158,2.0540074e-7,0.00030586176,0.000013259481,0.99722654,0.000009020541,0.00001076568,0.000698447],"study_design_scores_gemma":[0.00046499196,0.000038739192,0.037841868,0.0000045530332,0.000007490986,0.0000050030208,0.0006068559,0.000047199755,0.96070063,0.000053657448,0.00008501659,0.00014401991],"about_ca_topic_score_codex":0.000020206353,"about_ca_topic_score_gemma":0.000002371507,"teacher_disagreement_score":0.036525954,"about_ca_system_score_codex":0.00005449105,"about_ca_system_score_gemma":0.0000017699156,"threshold_uncertainty_score":0.99986583},"labels":[],"label_agreement":null},{"id":"W2103400628","doi":"10.1128/aem.71.3.1184-1192.2005","title":"Acquisition of Resistance to Extended-Spectrum Cephalosporins by <i>Salmonella enterica</i> subsp. <i>enterica</i> Serovar Newport and <i>Escherichia coli</i> in the Turkey Poult Intestinal Tract","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":107,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen Elizabeth II Health Sciences Centre; Dalhousie University; University of Guelph; Public Health Agency of Canada","funders":"Government of Canada; University of Guelph; Genome Canada","keywords":"Salmonella enterica; Microbiology; Serotype; Escherichia coli; Plasmid; Biology; Ceftiofur; Salmonella; Cephalosporin; Multiple drug resistance; Drug resistance; Enterobacteriaceae; Antibiotic resistance; Antibiotics; Bacteria; Virology; Gene; Genetics","score_opus":0.0029889734182500113,"score_gpt":0.18728938422157304,"score_spread":0.18430041080332302,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103400628","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99732107,0.0008471141,0.00021531717,0.0005237622,0.000032221717,0.000340544,0.00016263941,0.0000067004,0.0005506586],"genre_scores_gemma":[0.9957515,0.0008525236,0.001169364,0.001567337,0.00006493468,0.000019916999,0.00040678852,0.000023623501,0.00014401748],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99866414,0.000060364444,0.00035800008,0.000530005,0.000058232166,0.0003292461],"domain_scores_gemma":[0.99947864,0.000021459862,0.00014248739,0.00028051197,0.0000035120095,0.0000733914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001590093,0.00025540797,0.00027014207,0.00002685686,0.000063557076,0.00001565648,0.00021413187,0.0001472357,0.00001895323],"category_scores_gemma":[0.000002762525,0.00021744645,0.00004292917,0.000069471884,0.0003381141,0.000007942413,0.00013376804,0.00012998299,0.0000068607005],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031589085,0.00026623133,0.019381015,0.000016222153,0.00001667626,0.000004658802,0.00011966564,0.0000037742718,0.97835,0.00003140674,0.0012695813,0.00022491069],"study_design_scores_gemma":[0.0014864263,0.00056065974,0.20953819,0.000035843947,0.00003899651,0.000227622,0.0009569462,0.0000030236329,0.7009284,0.00004788385,0.08565733,0.00051869807],"about_ca_topic_score_codex":0.000017699496,"about_ca_topic_score_gemma":0.00002521571,"teacher_disagreement_score":0.2774216,"about_ca_system_score_codex":0.000032643977,"about_ca_system_score_gemma":0.000010284777,"threshold_uncertainty_score":0.88672084},"labels":[],"label_agreement":null},{"id":"W2103616557","doi":"10.1128/aem.00951-08","title":"Sequence Diversity of<i>Bacillus thuringiensis</i>Flagellin (H Antigen) Protein at the Intra-H Serotype Level","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Flagellin; Serotype; Biology; GenBank; Bacillus thuringiensis; Gene; Microbiology; Peptide sequence; Biovar; Nucleic acid sequence; Genetics; Virology; Bacteria","score_opus":0.023402856921897582,"score_gpt":0.19922683079091474,"score_spread":0.17582397386901716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103616557","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984582,0.00048756113,0.000082399434,0.000048074013,0.000041316678,0.00029137585,0.00022851188,0.000003887724,0.0003586582],"genre_scores_gemma":[0.9973476,0.0012062958,0.00012364036,0.00012709321,0.00004693584,0.000010806306,0.00023659137,0.000010740187,0.0008903004],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99917877,0.00004029509,0.00014301098,0.0003270586,0.00005084725,0.00025999147],"domain_scores_gemma":[0.9996272,0.000010351227,0.00005951845,0.00024242802,0.0000058382643,0.000054698834],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011642529,0.00014316413,0.00015390992,0.0000151249415,0.00036062274,0.0000032225182,0.00018151691,0.00015185933,0.000095381874],"category_scores_gemma":[0.0000046722894,0.00010730294,0.000049159655,0.00003151248,0.0009238106,0.0000024265726,0.0008176088,0.000094403775,0.000038531958],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014743721,0.00003536629,0.0038963233,0.000008044205,0.000031913667,0.000003825883,0.00010306716,0.000005098435,0.99423206,0.00002338016,0.00017258676,0.001340914],"study_design_scores_gemma":[0.00045377266,0.00014342942,0.010027771,0.000002706823,0.0000061437117,0.00010242465,0.00005050086,0.0000016530179,0.97183836,0.000022454135,0.017200528,0.00015027686],"about_ca_topic_score_codex":0.000041222233,"about_ca_topic_score_gemma":0.000019546304,"teacher_disagreement_score":0.022393703,"about_ca_system_score_codex":0.00002120119,"about_ca_system_score_gemma":0.000015605487,"threshold_uncertainty_score":0.4375687},"labels":[],"label_agreement":null},{"id":"W2103643749","doi":"10.1128/aem.68.4.1548-1555.2002","title":"Analysis of Bacteria Contaminating Ultrapure Water in Industrial Systems","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":245,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Quest University Canada","funders":"Nanjing Institute of Technology; Queen's University; University of Arizona; State University of New York; National Science Foundation","keywords":"Bacteria; Biology; Microbiology; Ultrapure water; Microorganism; Ralstonia; Bradyrhizobium japonicum; Stenotrophomonas; Pseudomonas; Symbiosis; Rhizobiaceae","score_opus":0.010006488643364115,"score_gpt":0.16294314615196873,"score_spread":0.1529366575086046,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103643749","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990098,0.00006272161,0.000002396085,0.000017788541,0.000043925324,0.00017895616,0.000051843897,0.0000066996586,0.0006258976],"genre_scores_gemma":[0.9993869,0.00003188125,0.00008354773,0.00002459733,0.00001313005,0.000014016762,0.00022033474,0.000007878741,0.00021770486],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991098,0.000043126573,0.0002592067,0.00028702404,0.000041248615,0.00025960465],"domain_scores_gemma":[0.9997657,0.000018669574,0.000056903522,0.00011710676,2.768866e-7,0.0000413341],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0000904401,0.00014810839,0.00031363082,0.000085469386,0.00004112802,0.000007812259,0.00008610587,0.00013407867,0.002039069],"category_scores_gemma":[5.910824e-7,0.000107714106,0.000049967,0.000105546766,0.00022685685,0.00003986769,0.00010664033,0.00008089393,0.00009729249],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013859363,0.00009427147,0.11773594,0.0000018829958,0.00011934489,0.0000044923167,0.00045840853,0.00013669908,0.8804246,0.0000058492965,0.000028701234,0.0009759563],"study_design_scores_gemma":[0.006358443,0.00043700146,0.19869624,0.000019614577,0.0011629043,0.000116619674,0.002617261,0.0019062281,0.7786063,0.000024668456,0.009004731,0.0010499897],"about_ca_topic_score_codex":0.00013995389,"about_ca_topic_score_gemma":0.000021620754,"teacher_disagreement_score":0.1018183,"about_ca_system_score_codex":0.00006987154,"about_ca_system_score_gemma":3.5551432e-7,"threshold_uncertainty_score":0.9988732},"labels":[],"label_agreement":null},{"id":"W2103703179","doi":"10.1128/aem.01676-10","title":"Class 1 Integrons, Selected Virulence Genes, and Antibiotic Resistance in <i>Escherichia coli</i> Isolates from the Minjiang River, Fujian Province, China","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Integron; Virulence; Antibiotic resistance; Biology; Ciprofloxacin; Microbiology; Carriage; Veterinary medicine; Escherichia coli; Antibiotics; Norfloxacin; Feces; Gene; Genetics; Geography; Medicine","score_opus":0.002017935946095912,"score_gpt":0.1655919838162953,"score_spread":0.16357404787019938,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103703179","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966184,0.002361677,0.000040900315,0.00015386299,0.00010411261,0.000322474,0.00018961755,0.00000951092,0.00019943385],"genre_scores_gemma":[0.9956406,0.0015464858,0.0017135289,0.00038032565,0.00008308087,0.000006568842,0.00043431815,0.00002484848,0.00017026819],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987779,0.000060061066,0.00022673285,0.00058553455,0.000028404918,0.00032135862],"domain_scores_gemma":[0.99948937,0.000034032473,0.000098848686,0.0003153131,0.0000033039341,0.000059151],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010220364,0.00024835992,0.00021758881,0.000019000232,0.00013032967,0.000026421063,0.00023033225,0.0002904528,0.000017919996],"category_scores_gemma":[0.000010607425,0.00019769545,0.000024936175,0.000057629168,0.00092670124,0.0000066164625,0.00020829898,0.0002847596,0.0000081918915],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012263813,0.000048089183,0.07554123,0.000008972404,0.000025334968,0.0000023704479,0.00008578619,3.0715967e-7,0.9231434,0.00007470432,0.00030462968,0.0006425335],"study_design_scores_gemma":[0.0008344074,0.00008531254,0.6061661,0.000022321676,0.000025932013,0.000021075317,0.0002332806,0.000009276718,0.35822815,0.00011986761,0.03386495,0.00038931172],"about_ca_topic_score_codex":0.00010632409,"about_ca_topic_score_gemma":0.001505742,"teacher_disagreement_score":0.56491524,"about_ca_system_score_codex":0.000017360348,"about_ca_system_score_gemma":0.00003004359,"threshold_uncertainty_score":0.8061787},"labels":[],"label_agreement":null},{"id":"W2103749831","doi":"10.1128/aem.02710-07","title":"Loss of Virulence Genes in <i>Escherichia coli</i> Populations during Manure Storage on a Commercial Swine Farm","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada","keywords":"Virulence; Biology; Manure; Feces; Population; Genotype; Microbiology; Escherichia coli; Gene; Veterinary medicine; Genetics; Agronomy","score_opus":0.011244233661518726,"score_gpt":0.22120032664744427,"score_spread":0.20995609298592555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103749831","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986766,0.0006776872,0.000017678094,0.000050234015,0.000030533774,0.00020282836,0.00008586756,0.000004280225,0.00025428212],"genre_scores_gemma":[0.99761,0.0016300633,0.00023827753,0.0001817173,0.00004840485,0.000037451107,0.0001507401,0.000013616852,0.00008973461],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99922574,0.00003912162,0.00017423456,0.0002915433,0.00003876794,0.00023057955],"domain_scores_gemma":[0.99973637,0.000009827717,0.000052730895,0.00015901722,0.0000027347712,0.00003930266],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000050178896,0.00014766645,0.00018811035,0.000036758265,0.00011647285,0.0000018980653,0.00010380095,0.00011952628,0.000010806533],"category_scores_gemma":[0.000004220077,0.00014343952,0.000033070868,0.000047558002,0.00041386276,0.0000017631635,0.0001991633,0.000116439114,0.000004599445],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015441947,0.00014627376,0.048825257,0.000013816953,0.000024530544,0.0000068361996,0.000097922806,0.00008309961,0.9503752,0.00004321907,0.000034826888,0.00019462296],"study_design_scores_gemma":[0.0015522398,0.0002941629,0.5506263,0.0000097972925,0.000010285964,0.00004189818,0.0002057374,0.000006984545,0.4433166,0.000017506794,0.003655748,0.0002627349],"about_ca_topic_score_codex":0.000033743436,"about_ca_topic_score_gemma":0.00008105171,"teacher_disagreement_score":0.50705856,"about_ca_system_score_codex":0.000023391816,"about_ca_system_score_gemma":0.000010190146,"threshold_uncertainty_score":0.5849294},"labels":[],"label_agreement":null},{"id":"W2103900102","doi":"10.1128/aem.02116-15","title":"A Genomic View of Lactobacilli and Pediococci Demonstrates that Phylogeny Matches Ecology and Physiology","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":240,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; Phylogenetic tree; Phylogenetics; Lactobacillus; Pediococcus; Zoology; Microbiology; Genetics; Bacteria; Gene","score_opus":0.014168553636835808,"score_gpt":0.1705715341450184,"score_spread":0.1564029805081826,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103900102","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99754727,0.0018185563,8.3411464e-7,0.00014683887,0.00003343505,0.00017545094,0.00012541986,0.000009374022,0.00014281792],"genre_scores_gemma":[0.99795526,0.0015153821,0.00012345113,0.00022516993,0.00003136649,0.000009300253,0.00012455591,0.000001498224,0.000014029236],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99925774,0.000036932714,0.00015128548,0.0003103954,0.000018087692,0.00022557413],"domain_scores_gemma":[0.999726,0.000060790422,0.00007706997,0.000040695344,0.0000022652328,0.00009321067],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008635776,0.00015686324,0.00027860166,0.000009940718,0.00006907548,0.0000081430735,0.00007741093,0.00017079852,0.000035932364],"category_scores_gemma":[0.0000014965942,0.0000732427,0.000021689057,0.000024912759,0.0005802691,0.000020369713,0.00021255658,0.00008152218,0.00000678677],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003119035,0.00004850901,0.044288408,0.000009024735,0.000023712368,6.065145e-7,0.000087401175,3.3280088e-7,0.94651383,0.00018681205,0.000019395075,0.008790769],"study_design_scores_gemma":[0.00078418787,0.0008024877,0.93415713,0.000006427044,0.00004833988,0.00017851105,0.0022786874,0.0000076272704,0.051917054,0.002248922,0.0072275214,0.00034307785],"about_ca_topic_score_codex":0.000023371733,"about_ca_topic_score_gemma":0.000032176617,"teacher_disagreement_score":0.8945968,"about_ca_system_score_codex":0.0000118694425,"about_ca_system_score_gemma":0.0000024416806,"threshold_uncertainty_score":0.29867506},"labels":[],"label_agreement":null},{"id":"W2104283537","doi":"10.1128/aem.02066-07","title":"Autoinducer-2 Triggers the Oxidative Stress Response in <i>Mycobacterium avium</i> , Leading to Biofilm Formation","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":92,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"National Center for Research Resources","keywords":"Biofilm; Quorum sensing; Microbiology; Oxidative stress; Hydrogen peroxide; Biology; Mycobacterium; Autoinducer; Chemistry; Bacteria; Biochemistry; Genetics","score_opus":0.007339160561732565,"score_gpt":0.1930230127666572,"score_spread":0.18568385220492464,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104283537","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99894595,0.0000997185,0.00003037736,0.00029760716,0.00009409143,0.00026407957,0.00010388382,0.000006867687,0.00015744078],"genre_scores_gemma":[0.99821097,0.00018242128,0.00019574606,0.0008329904,0.00006653511,0.000017105764,0.00037970007,0.000014154599,0.00010038475],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991139,0.00008798688,0.00019281855,0.0003057912,0.00002524248,0.00027423791],"domain_scores_gemma":[0.99968934,0.000022950595,0.00005939205,0.00017342348,0.0000023382288,0.000052564963],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015082615,0.00016335587,0.00015188717,0.00004408216,0.0001532582,0.000011117395,0.0000944941,0.00016045407,0.000012684905],"category_scores_gemma":[0.0000071497425,0.00012837436,0.000032709548,0.000051324216,0.00020300141,0.000006265986,0.00014118462,0.00009930641,0.000032603093],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00058223266,0.000031385807,0.0004995514,0.0000027564738,0.000010781115,0.0000029264784,0.00038553288,0.000010875691,0.9974258,0.00000797924,0.00025361046,0.0007865941],"study_design_scores_gemma":[0.0005121775,0.00022609606,0.009265828,0.000006062872,0.000006006793,0.00014474585,0.00046079836,0.0000021023343,0.96867996,0.0000018608453,0.020508835,0.00018551605],"about_ca_topic_score_codex":0.000012865537,"about_ca_topic_score_gemma":0.000012591914,"teacher_disagreement_score":0.028745804,"about_ca_system_score_codex":0.00003538362,"about_ca_system_score_gemma":0.000012683326,"threshold_uncertainty_score":0.52349544},"labels":[],"label_agreement":null},{"id":"W2104647099","doi":"10.1128/aem.01930-10","title":"Solute Transport Proteins and the Outer Membrane Protein NmpC Contribute to Heat Resistance of Escherichia coli AW1.7","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canada Research Chairs","keywords":"Escherichia coli; Porin; Bacterial outer membrane; Biology; Heat shock protein; Heat shock; Molecular biology; GroEL; Gel electrophoresis; Biochemistry; Gene","score_opus":0.00643343830946096,"score_gpt":0.18593785038713195,"score_spread":0.17950441207767098,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104647099","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99638003,0.00097519293,0.00027243138,0.0002882185,0.000016888378,0.0012548446,0.00013324623,0.0000055431815,0.0006735909],"genre_scores_gemma":[0.9967123,0.00047262225,0.0014546113,0.00038320274,0.000029292734,0.00032687723,0.000061448925,0.000016604174,0.00054302556],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990165,0.000063426465,0.00021002663,0.0003673761,0.000044738597,0.0002979286],"domain_scores_gemma":[0.99962807,0.000012694857,0.000048149803,0.0002296606,0.0000068661957,0.00007454828],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022533971,0.00018198491,0.0002777305,0.00001773111,0.00011326007,0.000003935791,0.00014590909,0.0001222444,0.000017961793],"category_scores_gemma":[0.000008643237,0.00012985231,0.00004366159,0.000035922796,0.00092080125,0.0000026237892,0.00021566112,0.00010539256,0.0000036406893],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010821793,0.00006116153,0.0006056238,0.000034388617,0.00010842906,0.0000018868532,0.00035418945,6.9009445e-7,0.9972607,0.0003566052,0.000066782064,0.00006737723],"study_design_scores_gemma":[0.0025230406,0.00030203353,0.008353096,0.000014689856,0.00003369002,0.000008503208,0.00025932537,0.0000017663369,0.96849483,0.00010149865,0.019673895,0.00023363627],"about_ca_topic_score_codex":0.000048276746,"about_ca_topic_score_gemma":0.000101265985,"teacher_disagreement_score":0.028765861,"about_ca_system_score_codex":0.000009980652,"about_ca_system_score_gemma":0.000013664207,"threshold_uncertainty_score":0.52952236},"labels":[],"label_agreement":null},{"id":"W2104663418","doi":"10.1128/aem.66.10.4305-4314.2000","title":"Cytological Effects of Cellulases in the Parasitism of <i>Phytophthora parasitica</i> by <i>Pythium oligandrum</i>","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Oomycete; Phytophthora; Biology; Hypha; Pythium; Microbiology; Antibiosis; Root rot; Botany; Cell wall; Pathogen; Bacteria","score_opus":0.0022378609307978905,"score_gpt":0.14625324704581547,"score_spread":0.14401538611501757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104663418","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974977,0.0012719785,6.0655725e-7,0.000098818586,0.000014465795,0.00017455273,0.00032330892,0.0000044440108,0.00061413733],"genre_scores_gemma":[0.9982248,0.0011739583,0.000018893623,0.00031480257,0.000015694946,0.000013734067,0.00019892698,6.840624e-7,0.000038494505],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992942,0.000070827016,0.00019167195,0.00020636691,0.00003905348,0.00019787943],"domain_scores_gemma":[0.99961025,0.00026273634,0.000052560037,0.000046629673,7.855043e-7,0.000027034503],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008061176,0.00011694328,0.00023254004,0.000004476753,0.000054146913,0.000003598591,0.00014088865,0.0001164636,0.000093637136],"category_scores_gemma":[0.000001408326,0.000042141397,0.000041384512,0.00005758571,0.00034042366,0.000012816425,0.00002255452,0.00008284893,0.000007940398],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004052542,0.0001677943,0.0030995777,0.000011302596,0.000005053925,0.0000104263145,0.00002451192,0.0000010039762,0.989983,0.00007409011,0.00015794167,0.0064247577],"study_design_scores_gemma":[0.0004589689,0.00036906422,0.25356525,0.00002379075,0.000023506229,0.00013118425,0.00029500955,0.0000016311927,0.7320406,0.00024389183,0.01261915,0.00022797169],"about_ca_topic_score_codex":0.000021650816,"about_ca_topic_score_gemma":0.000009551476,"teacher_disagreement_score":0.2579424,"about_ca_system_score_codex":0.000004441,"about_ca_system_score_gemma":9.4330585e-7,"threshold_uncertainty_score":0.17184763},"labels":[],"label_agreement":null},{"id":"W2104813384","doi":"10.1128/aem.71.11.7556-7558.2005","title":"Evidence for Horizontal Transfer of 1-Aminocyclopropane-1-Carboxylate Deaminase Genes","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":125,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Division of Chemistry; Natural Sciences and Engineering Research Council of Canada; National Science Foundation","keywords":"Horizontal gene transfer; Biology; Gene; Phylogenetic tree; Genetics; Horizontal transmission; Gene transfer; Carboxylate; Bacteria; Biochemistry","score_opus":0.013510159472970936,"score_gpt":0.20746066240959535,"score_spread":0.1939505029366244,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104813384","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98989624,0.009141312,0.0003560005,0.000046984565,0.000042252184,0.00027409993,0.00015837088,0.0000016484621,0.000083100975],"genre_scores_gemma":[0.99458736,0.003678774,0.001259488,0.00011300327,0.00012470085,0.00004949687,0.000111812325,0.000015304167,0.00006005663],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992942,0.000011250204,0.00017451463,0.00030850465,0.000017764925,0.00019376677],"domain_scores_gemma":[0.9997718,0.000019320947,0.000031362437,0.00013656665,0.0000034573159,0.00003752778],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006335143,0.00014711524,0.00016803405,0.000016885799,0.000058392154,0.0000028778088,0.00008825737,0.00011165909,0.000008444052],"category_scores_gemma":[0.0000022642869,0.00013575186,0.000058934667,0.000011106764,0.00022290356,6.9893827e-7,0.00007987874,0.000030414785,0.0000027098022],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012605917,0.000042337222,0.0017399612,0.000014431498,0.000056628454,1.6918943e-7,0.00005888246,0.000017086735,0.97728324,0.000059873364,0.00003885906,0.020562459],"study_design_scores_gemma":[0.0006831494,0.0003930577,0.0051358263,0.0000046101272,0.000039853865,0.000024829276,0.000116267634,0.0000068455192,0.96707946,0.000027514403,0.026306449,0.0001821463],"about_ca_topic_score_codex":0.000004916549,"about_ca_topic_score_gemma":0.000013070004,"teacher_disagreement_score":0.02626759,"about_ca_system_score_codex":0.0000091428565,"about_ca_system_score_gemma":0.000007841631,"threshold_uncertainty_score":0.55358005},"labels":[],"label_agreement":null},{"id":"W2105018844","doi":"10.1128/aem.72.1.575-584.2006","title":"Influence of Nutrient Inputs, Hexadecane, and Temporal Variations on Denitrification and Community Composition of River Biofilms","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Environment and Climate Change Canada; McGill University; Biotechnology Research Institute","funders":"Health Canada","keywords":"Denitrification; Denitrifying bacteria; Heterotroph; Nutrient; Aerobic denitrification; Environmental chemistry; Autotroph; Bacterioplankton; Biomass (ecology); Biofilm; Chemistry; Nitrate; Biology; Ecology; Nitrogen; Bacteria","score_opus":0.004625339454097526,"score_gpt":0.1715085106552521,"score_spread":0.1668831712011546,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105018844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99950314,0.000048847396,0.00002487884,0.000023955508,0.0000052688465,0.00018163159,0.00009009541,0.000005330411,0.00011686441],"genre_scores_gemma":[0.99832225,0.00005387084,0.0012765664,0.00003589427,0.0000040263203,0.0000072276966,0.00028444346,0.000004867427,0.00001085116],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994746,0.000061374056,0.000174186,0.00015433219,0.000035930167,0.00009961765],"domain_scores_gemma":[0.9997214,0.000043426906,0.00009901047,0.00010622677,9.1077413e-7,0.00002901721],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007786316,0.00010567461,0.00013727101,0.000031195977,0.00012814812,0.0000034611003,0.000049157028,0.000070727336,0.000017819699],"category_scores_gemma":[5.405956e-7,0.000093156756,0.000013041007,0.000038349463,0.0007060535,0.000039787785,0.00009822969,0.00008111613,0.000006552329],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003836977,0.00023975516,0.114604324,0.000006792037,0.000009536491,3.136701e-7,0.00020087666,0.000070509595,0.8843813,0.000254055,0.000009340052,0.00018481401],"study_design_scores_gemma":[0.00065245933,0.0001774285,0.5503885,0.0000056555377,0.000025857427,0.000021473965,0.000070886104,0.000015314972,0.4479698,0.0004715028,0.00011052138,0.00009056939],"about_ca_topic_score_codex":0.00061887223,"about_ca_topic_score_gemma":0.0000144038395,"teacher_disagreement_score":0.43641153,"about_ca_system_score_codex":0.00003070164,"about_ca_system_score_gemma":0.0000013306155,"threshold_uncertainty_score":0.37988222},"labels":[],"label_agreement":null},{"id":"W2105045699","doi":"10.1128/aem.02201-10","title":"Induction of a State of Iron Limitation in Uropathogenic <i>Escherichia coli</i> CFT073 by Cranberry-Derived Proanthocyanidins as Revealed by Microarray Analysis","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University and Génome Québec Innovation Centre; McGill University","funders":"","keywords":"Escherichia coli; Proanthocyanidin; Bacteria; Microbiology; Chemistry; Biology; Biochemistry; Food science; Gene; Genetics; Polyphenol; Antioxidant","score_opus":0.0027235919369356164,"score_gpt":0.18982306979220537,"score_spread":0.18709947785526976,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105045699","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984775,0.0005146032,0.00007997534,0.00004218261,0.000037729205,0.00034159573,0.00044976178,0.0000037750835,0.00005283243],"genre_scores_gemma":[0.9958386,0.000989583,0.0005087728,0.0001681748,0.000013187719,0.000021210613,0.0023304839,0.000018883871,0.0001111271],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99884087,0.00006991807,0.00039250462,0.0004233905,0.00003210762,0.00024118954],"domain_scores_gemma":[0.9994796,0.000011344124,0.00023660922,0.00020608107,0.0000068228187,0.00005953441],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016636352,0.00018668204,0.0003334261,0.000066559216,0.00004449231,0.0000038972007,0.0001049599,0.00024048937,0.000024195728],"category_scores_gemma":[0.0000053143654,0.00018901529,0.000071287475,0.00012670891,0.0003077625,0.00000443867,0.00006924355,0.00017358088,0.0000044784047],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014161164,0.00022778181,0.00728795,0.00003098127,0.00008428439,2.9420738e-7,0.0001841787,0.000006886878,0.9911342,0.0000043636346,0.00026879882,0.00062864437],"study_design_scores_gemma":[0.0009145357,0.00023583748,0.03130359,0.0000032573384,0.000085263404,0.000010545563,0.00014389154,0.0000028521267,0.9645508,0.00001362041,0.00255663,0.00017921088],"about_ca_topic_score_codex":0.0000833296,"about_ca_topic_score_gemma":0.000120037825,"teacher_disagreement_score":0.026583457,"about_ca_system_score_codex":0.000017653094,"about_ca_system_score_gemma":0.00002632058,"threshold_uncertainty_score":0.770782},"labels":[],"label_agreement":null},{"id":"W2105046777","doi":"10.1128/aem.00429-08","title":"Increased Fitness of <i>Pseudomonas fluorescens</i> Pf0-1 Leucine Auxotrophs in Soil","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; U.S. Department of Agriculture","keywords":"Pseudomonas fluorescens; Biology; Gene; Genome; Genetics; Auxotrophy; Mutant; Strain (injury); Bacteria","score_opus":0.00463639530096592,"score_gpt":0.1692555672507216,"score_spread":0.16461917194975567,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105046777","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990629,0.00041133212,0.0000062864924,0.000030608637,0.0000552032,0.00011750405,0.000074991185,0.000004299997,0.0002368534],"genre_scores_gemma":[0.9979219,0.0008148712,0.00030935337,0.00024334963,0.000067297595,0.000005172948,0.00058033713,0.000016156986,0.00004155871],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99917066,0.000029814346,0.00022398161,0.00032087992,0.000023504286,0.00023115663],"domain_scores_gemma":[0.999697,0.0000087933495,0.00006861755,0.00017431342,0.0000024264227,0.000048802533],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000056924546,0.00016075835,0.00023169085,0.000034664325,0.000054118045,0.000002122092,0.00007341389,0.00019381444,0.000023300387],"category_scores_gemma":[0.0000031748973,0.0001511239,0.000040277286,0.000032097745,0.00040271194,0.0000020485236,0.00013353227,0.00007436109,0.000006328354],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016624229,0.00008680798,0.0076403352,0.0000084953945,0.000016833259,0.0000075217054,0.000038433845,0.0000075085372,0.9912851,0.000021458314,0.00015591251,0.0005653924],"study_design_scores_gemma":[0.0013025192,0.00014842839,0.026457774,0.000005860804,0.000008051107,0.0001973992,0.0000583084,0.000002630481,0.9673465,0.0000067409,0.004284742,0.00018107021],"about_ca_topic_score_codex":0.000082380284,"about_ca_topic_score_gemma":0.000021870916,"teacher_disagreement_score":0.023938583,"about_ca_system_score_codex":0.00001138006,"about_ca_system_score_gemma":0.000014268061,"threshold_uncertainty_score":0.61626536},"labels":[],"label_agreement":null},{"id":"W2105103403","doi":"10.1128/aem.66.12.5503-5505.2000","title":"Anaerobic Toluene Activation by Benzylsuccinate Synthase in a Highly Enriched Methanogenic Culture","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":92,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Toluene; Denitrifying bacteria; Anoxygenic photosynthesis; Sulfate; Chemistry; Bacteria; Biochemistry; Anaerobic exercise; Microbiology; Biotransformation; Biology; Environmental chemistry; Phototroph; Enzyme; Denitrification; Organic chemistry","score_opus":0.0019093353237720854,"score_gpt":0.1661364560314373,"score_spread":0.16422712070766524,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105103403","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99808973,0.0013967323,0.0000657106,0.00007753652,0.000043293483,0.00016759237,0.00004705984,0.000011949056,0.000100416066],"genre_scores_gemma":[0.9958661,0.0015785383,0.00023937522,0.00024334432,0.00008353381,0.000023639439,0.0011409967,0.000016703247,0.0008077306],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991564,0.000029076331,0.00014557767,0.00042046513,0.000020559024,0.00022788337],"domain_scores_gemma":[0.99975955,0.0000020167504,0.00003450988,0.00015895508,0.0000015593492,0.000043379525],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007408891,0.00017743,0.00015975909,0.000032900454,0.000045810895,0.0000068447393,0.000074897456,0.00021837471,0.000078310724],"category_scores_gemma":[0.0000025187562,0.00016607145,0.00003195888,0.000057497185,0.00007494491,0.0000040485525,0.000035367153,0.0001048427,0.000020273153],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006527947,0.00007559521,0.00008693222,0.0000060994494,0.000023503588,4.738922e-7,0.000044750846,0.000059017653,0.9906879,0.000010783089,0.0007509824,0.008188684],"study_design_scores_gemma":[0.00066617166,0.00009845623,0.00086887786,0.0000031808675,0.000011599315,0.000033096923,0.000041605526,0.000003575491,0.9070661,0.000011846982,0.09098985,0.00020566011],"about_ca_topic_score_codex":0.00002162097,"about_ca_topic_score_gemma":0.0000044370563,"teacher_disagreement_score":0.09023887,"about_ca_system_score_codex":0.000022736831,"about_ca_system_score_gemma":0.000004409368,"threshold_uncertainty_score":0.6772197},"labels":[],"label_agreement":null},{"id":"W2105103454","doi":"10.1128/aem.66.9.3960-3965.2000","title":"Overexpression of Protein Disulfide Isomerase DsbC Stabilizes Multiple-Disulfide-Bonded Recombinant Protein Produced and Transported to the Periplasm in <i>Escherichia coli</i>","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Endoplasmic Reticulum Stress and Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Petroleum Technology Research Centre","keywords":"Periplasmic space; Protein disulfide-isomerase; DsbA; Escherichia coli; Protein folding; Biochemistry; Chemistry; Isomerase; Chaperone (clinical); Horseradish peroxidase; Biophysics; Biology; Enzyme; Gene","score_opus":0.0029896609407834155,"score_gpt":0.17493365122973092,"score_spread":0.1719439902889475,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105103454","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99753714,0.0005615167,0.000007151674,0.00016733722,0.000015866348,0.0014283347,0.0001946197,0.000006241776,0.00008177525],"genre_scores_gemma":[0.9985023,0.00030695077,0.00021271172,0.00013972241,0.000018315168,0.00033043465,0.00028367073,0.000021456524,0.00018442476],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987569,0.000068473615,0.0003102109,0.0005381156,0.0000461672,0.00028013994],"domain_scores_gemma":[0.99952734,0.000013191151,0.00006946878,0.00028089946,0.0000031291197,0.00010600444],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009426092,0.00023190578,0.0002484812,0.000024797788,0.00008220197,0.0000090215435,0.00012262889,0.00013906376,0.0000743717],"category_scores_gemma":[0.000008942769,0.00016916948,0.0000435979,0.0000504052,0.00026986763,0.0000049097475,0.000081942264,0.00010775085,0.000004189869],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00084491825,0.0002516532,0.0037685959,0.000039938473,0.000018372999,0.0000020334749,0.00018122411,0.000029142655,0.9918011,0.000014116267,0.000035601435,0.0030133324],"study_design_scores_gemma":[0.0021484352,0.00028721016,0.011766397,0.000058529047,0.0000142467115,0.000010260939,0.0002933599,0.000014636517,0.98069906,0.000037177313,0.0044195843,0.0002511223],"about_ca_topic_score_codex":0.000066756504,"about_ca_topic_score_gemma":0.000057094167,"teacher_disagreement_score":0.011102031,"about_ca_system_score_codex":0.000012878935,"about_ca_system_score_gemma":0.000017646416,"threshold_uncertainty_score":0.6898531},"labels":[],"label_agreement":null},{"id":"W2105140324","doi":"10.1128/aem.02435-13","title":"Characterization of CpdC, a Large-Ring Lactone-Hydrolyzing Enzyme from Pseudomonas sp. Strain HI-70, and Its Use as a Fusion Tag Facilitating Overproduction of Proteins in Escherichia coli","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme Catalysis and Immobilization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Centre in Green Chemistry and Catalysis; National Research Council Canada","funders":"","keywords":"Escherichia coli; Overproduction; Biochemistry; Enzyme; Hydrolase; Plasmid; Pseudomonas; Biology; Bacteria; Chemistry; Fusion protein; Strain (injury); Stereochemistry; Gene; Recombinant DNA; Genetics","score_opus":0.005171712337217656,"score_gpt":0.18344878914316337,"score_spread":0.1782770768059457,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105140324","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986892,0.00023042792,0.00032299428,0.000013580338,0.00002032437,0.0004527243,0.0002553172,0.0000033803296,0.000012068698],"genre_scores_gemma":[0.9967668,0.00032785503,0.00025532712,0.000045854933,0.000023892419,0.00004075467,0.0024951906,0.00001285157,0.00003147334],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99915624,0.00004312601,0.0002791025,0.00034310864,0.000031521275,0.00014689527],"domain_scores_gemma":[0.9996663,0.00001203562,0.00016410952,0.00012054906,0.0000073937103,0.000029667575],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009246508,0.00013488354,0.00019637439,0.00004092964,0.000038830036,0.000008886703,0.00004365884,0.0001547168,0.000043482283],"category_scores_gemma":[0.000017042266,0.00013452256,0.000024764704,0.00004473946,0.00007936607,0.000022215536,0.0001142281,0.00006431995,0.0000026776352],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000450092,0.00009233058,0.0034836351,0.000026876329,0.000021732803,1.590142e-7,0.00031702215,0.000018480201,0.9953833,0.000030500225,0.0000014143887,0.0005795382],"study_design_scores_gemma":[0.0006106924,0.00011705254,0.034496263,0.000017845065,0.000012023499,0.0000030781787,0.0003016208,0.00016734988,0.9639299,0.000016515494,0.00020294037,0.00012474589],"about_ca_topic_score_codex":0.00012496614,"about_ca_topic_score_gemma":0.000017755383,"teacher_disagreement_score":0.031453427,"about_ca_system_score_codex":0.000013349448,"about_ca_system_score_gemma":0.000007396199,"threshold_uncertainty_score":0.5485671},"labels":[],"label_agreement":null},{"id":"W2105273880","doi":"10.1128/aem.72.3.1784-1792.2006","title":"Freeze-Thaw Tolerance and Clues to the Winter Survival of a Soil Community","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":195,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Queen's University","funders":"University of Calgary","keywords":"Biology; Bacteria; Strain (injury); Microbial population biology; Population; Microorganism; Antifreeze protein; Ice crystals; Desiccation; Microbiology; Botany; Genetics","score_opus":0.005736319261135378,"score_gpt":0.18927793796550765,"score_spread":0.18354161870437227,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105273880","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99539447,0.0001046827,0.000043282394,0.00031404692,0.000034031807,0.00018097537,0.00009541382,0.000006900988,0.003826181],"genre_scores_gemma":[0.99908257,0.000047252273,0.00010160359,0.00047252982,0.000023700732,0.000017173716,0.000042799107,0.000007721255,0.00020463958],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992225,0.00010824499,0.00014553587,0.00019187466,0.000040559946,0.00029127317],"domain_scores_gemma":[0.9996177,0.00008484456,0.000036341415,0.00019967649,4.6295577e-7,0.000060991257],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002533444,0.00011523113,0.0001647479,0.000015618547,0.0002115219,0.000007859057,0.00019743235,0.00007000666,0.00042757773],"category_scores_gemma":[0.000003291061,0.00008363089,0.000021414575,0.00003670075,0.0009143653,0.000028896862,0.00062498427,0.00018594204,0.00013894086],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004247288,0.00009295996,0.1458102,0.000004187851,0.000008517147,8.590926e-7,0.0002576551,0.00009415654,0.85025054,0.00008917002,0.001758052,0.0015912338],"study_design_scores_gemma":[0.0005714653,0.00022899557,0.93714637,0.000003185714,0.000009161032,0.000043960972,0.00074063585,0.000019786175,0.03249204,0.00076082145,0.0278005,0.00018305008],"about_ca_topic_score_codex":0.0024978388,"about_ca_topic_score_gemma":0.0048540635,"teacher_disagreement_score":0.8177585,"about_ca_system_score_codex":0.000029121662,"about_ca_system_score_gemma":0.0000017619657,"threshold_uncertainty_score":0.46816763},"labels":[],"label_agreement":null},{"id":"W2105480873","doi":"10.1128/aem.01155-15","title":"Clostridium botulinum Group II Isolate Phylogenomic Profiling Using Whole-Genome Sequence Data","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Botulinum Toxin and Related Neurological Disorders","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada; Public Health Agency of Canada","funders":"","keywords":"Multilocus sequence typing; Biology; Genetics; In silico; Typing; Clade; Whole genome sequencing; Genome; SNP; Single-nucleotide polymorphism; Sequence analysis; Phylogenetic tree; Computational biology; Genotype; Gene","score_opus":0.06094395498620161,"score_gpt":0.2523485947339746,"score_spread":0.19140463974777297,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105480873","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966361,0.0014321621,0.00016691965,0.00034870685,0.00017242438,0.0004571801,0.00044684284,0.000048721133,0.0002909701],"genre_scores_gemma":[0.9921619,0.00035969188,0.0018680264,0.0015169734,0.0000930978,0.0000061096207,0.003863418,0.000030785824,0.00009997421],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99851376,0.00003877322,0.0002859288,0.00069176895,0.000049502753,0.0004202695],"domain_scores_gemma":[0.99924695,0.000017458335,0.00008879128,0.00043348662,0.0000025969866,0.0002107055],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015785878,0.00025217774,0.00034895822,0.000037279326,0.00015555155,0.000009225239,0.00021108212,0.00032067133,0.00004000628],"category_scores_gemma":[0.00000540961,0.00020497553,0.000039803894,0.000064161315,0.0004965248,0.000049741906,0.0006850256,0.00039526576,0.00007668835],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019037357,0.00015630633,0.00095157983,0.000012001836,0.00006109218,0.000031680414,0.00007064804,0.000044431206,0.9978216,0.000041102165,0.000056043493,0.0005631259],"study_design_scores_gemma":[0.06168915,0.015224543,0.016358739,0.0002944007,0.003350791,0.019880665,0.006621974,0.026766771,0.1985408,0.005306358,0.6382834,0.007682422],"about_ca_topic_score_codex":0.000009788998,"about_ca_topic_score_gemma":6.5959176e-7,"teacher_disagreement_score":0.7992808,"about_ca_system_score_codex":0.00007274333,"about_ca_system_score_gemma":0.000027758551,"threshold_uncertainty_score":0.8358659},"labels":[],"label_agreement":null},{"id":"W2105775187","doi":"10.1128/aem.67.10.4919-4921","title":"Isolation of an Aldehyde Dehydrogenase Involved in the Oxidation of Fluoroacetaldehyde to Fluoroacetate in <i>Streptomyces cattleya</i>","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial metabolism and enzyme function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Directorate for Biological Sciences; Queen's University","keywords":"Fluoroacetate; Isolation (microbiology); Streptomyces; Aldehyde dehydrogenase; Biology; Aldehyde; Biochemistry; Chemistry; Microbiology; Bacteria; Enzyme; Genetics","score_opus":0.0049549552785984035,"score_gpt":0.1900379314618936,"score_spread":0.1850829761832952,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105775187","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989799,0.0003753443,0.00015875284,0.00004619915,0.000037140675,0.000277096,0.00005108551,0.00000235285,0.000072118724],"genre_scores_gemma":[0.9979938,0.00035544435,0.0005679569,0.00026468397,0.00003458618,0.000024545992,0.00073702045,0.000009996119,0.00001191708],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99915504,0.000080862534,0.0002841586,0.00027903786,0.000031865704,0.00016902685],"domain_scores_gemma":[0.99965984,0.000010674687,0.00008897885,0.00020645578,0.0000031469324,0.000030911215],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021076288,0.00012867969,0.00017769705,0.00007611829,0.000023505176,0.0000030985254,0.00012101305,0.00012333976,0.000014693189],"category_scores_gemma":[0.000005198639,0.00010871893,0.000027748696,0.000097789554,0.00011484408,0.000008125164,0.00006132492,0.000059162652,0.000003525867],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017023791,0.0001423702,0.008169414,0.000008577516,0.0000085204565,6.933494e-7,0.000311361,0.00021717953,0.9894034,0.000025164978,0.000056712062,0.001486321],"study_design_scores_gemma":[0.0007745681,0.00019005283,0.021059135,0.0000056592144,0.000011999558,0.000021312395,0.0006874928,0.000017587274,0.97426236,0.00003547229,0.0028113518,0.00012303008],"about_ca_topic_score_codex":0.00011107362,"about_ca_topic_score_gemma":0.0003344505,"teacher_disagreement_score":0.015141111,"about_ca_system_score_codex":0.0000102123595,"about_ca_system_score_gemma":0.000007833586,"threshold_uncertainty_score":0.44334295},"labels":[],"label_agreement":null},{"id":"W2105843161","doi":"10.1128/aem.00990-07","title":"Complete Genomic Sequence of Bacteriophage φEcoM-GJ1, a Novel Phage That Has Myovirus Morphology and a Podovirus-Like RNA Polymerase","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University; Public Health Agency of Canada; Université de Montréal; University of Guelph","funders":"Ministry of Agriculture, Food and Rural Affairs; Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Agriculture, Food and Rural Affairs; University of Guelph","keywords":"Podoviridae; Myoviridae; Siphoviridae; Biology; Bacteriophage; Genetics; Genome; RNA polymerase; Gene; ORFS; Molecular biology; Open reading frame; Escherichia coli; Peptide sequence","score_opus":0.022199803237893175,"score_gpt":0.21407906277977837,"score_spread":0.1918792595418852,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105843161","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969733,0.00024550143,0.00047620072,0.0000900782,0.00016425982,0.00032164736,0.0009542455,0.00002404543,0.00075073814],"genre_scores_gemma":[0.9958192,0.00021081099,0.0021578898,0.0012711207,0.000030718908,0.000012057479,0.00026735227,0.0000330774,0.00019778467],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99830335,0.000032241875,0.00040418055,0.00064248696,0.000048524427,0.0005691868],"domain_scores_gemma":[0.9992367,0.000087114226,0.00021694417,0.00028683743,0.0000011215723,0.0001712904],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00019678286,0.00033749736,0.0004053121,0.00007495763,0.00026707642,0.000026303409,0.00021391928,0.00020311907,0.0019880212],"category_scores_gemma":[0.0000018483569,0.00032948848,0.00007230083,0.00006741612,0.0018076187,0.0001244825,0.00056635775,0.0002443682,0.00019377985],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011941954,0.00016052445,0.0024862345,0.000009078375,0.00003879231,0.000021906044,0.0003486292,0.0000026608216,0.99107236,0.000028258284,0.0000850435,0.0056270757],"study_design_scores_gemma":[0.0026199229,0.00031623614,0.29009125,0.000015835401,0.00010434218,0.0020830564,0.00067316287,0.000019983525,0.6502665,0.00004351087,0.05295802,0.0008081341],"about_ca_topic_score_codex":0.00063296943,"about_ca_topic_score_gemma":0.00012580128,"teacher_disagreement_score":0.34080583,"about_ca_system_score_codex":0.00013146947,"about_ca_system_score_gemma":0.000006721531,"threshold_uncertainty_score":0.9999157},"labels":[],"label_agreement":null},{"id":"W2105918195","doi":"10.1128/aem.01642-10","title":"Characterization of a Phosphotriesterase-Like Lactonase from <i>Sulfolobus solfataricus</i> and Its Immobilization for Disruption of Quorum Sensing","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Homoserine; Quorum sensing; Sulfolobus solfataricus; Quorum Quenching; Pyocyanin; Chemistry; Biochemistry; Pseudomonas putida; Enzyme; Virulence; Microbiology; Biology","score_opus":0.003725446338107841,"score_gpt":0.17604282856497191,"score_spread":0.17231738222686407,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105918195","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983036,0.000099084195,0.0005792238,0.000022419168,0.00013717667,0.0002326906,0.00061783247,0.0000031227778,0.000004865623],"genre_scores_gemma":[0.9941763,0.00018960796,0.00062258274,0.000092624476,0.000055037905,0.0000032434905,0.004838712,0.000012777476,0.000009101454],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994147,0.000011584846,0.0001936984,0.00024643974,0.000015939766,0.00011765388],"domain_scores_gemma":[0.9997091,0.000013163755,0.00014169543,0.00009948046,0.000007026472,0.000029528599],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005012361,0.00011491073,0.0001604998,0.000017293307,0.00004588954,0.00000501339,0.000028869046,0.0001877916,0.0000068279137],"category_scores_gemma":[0.0000035468424,0.000110264176,0.000026009868,0.000016377942,0.00013202074,0.000005330859,0.00006647184,0.000042671505,4.137041e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018041945,0.000037012524,0.0005399004,0.000016306787,0.000021015163,1.1703192e-7,0.000053808413,5.1144895e-7,0.9961025,0.000023450219,0.000004104406,0.0030208481],"study_design_scores_gemma":[0.0005975073,0.000115535586,0.0038649845,0.000004872329,0.00002589919,0.000014576466,0.000042824533,0.000042691747,0.992943,0.000010781974,0.0022245399,0.00011278805],"about_ca_topic_score_codex":0.000018609904,"about_ca_topic_score_gemma":0.000017318398,"teacher_disagreement_score":0.0042208796,"about_ca_system_score_codex":0.0000031766149,"about_ca_system_score_gemma":0.00000603043,"threshold_uncertainty_score":0.44964427},"labels":[],"label_agreement":null},{"id":"W2106259173","doi":"10.1128/aem.02600-12","title":"Carboxyethylarginine Synthase Genes Show Complex Cross-Regulation in Streptomyces clavuligerus","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Streptomyces clavuligerus; Mutant; Complementation; Biosynthesis; Biology; Biochemistry; Gene; Streptomyces; Genetics; Actinomycetales; Bacteria","score_opus":0.012691268857010968,"score_gpt":0.2361701012395953,"score_spread":0.22347883238258434,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106259173","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966863,0.0021512562,0.000003648493,0.00028197083,0.000088717214,0.00030253717,0.00007502664,0.00002164526,0.00038894193],"genre_scores_gemma":[0.9979776,0.00028550238,0.00040369405,0.0004351013,0.00020792073,0.0000036159454,0.0005054536,0.000016586615,0.00016448784],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990271,0.00002557073,0.00023442846,0.00031195252,0.000036312922,0.00036465263],"domain_scores_gemma":[0.9996418,0.000033650995,0.00006194687,0.00016146009,0.0000024630358,0.00009867472],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013648745,0.00019007089,0.00029616922,0.00007191917,0.00006933512,0.000009651407,0.000049720282,0.00017974201,0.00068688183],"category_scores_gemma":[0.0000051763614,0.00015058651,0.00003908895,0.00005525699,0.0002871093,0.000054758122,0.00008181732,0.00014278668,0.00005602266],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010797347,0.0001628178,0.072389044,0.000023949593,0.000023796018,0.0000023117,0.00010996201,0.0000019476497,0.9178293,0.000049181966,0.0001358195,0.009163929],"study_design_scores_gemma":[0.0009815166,0.00006706276,0.38911432,0.000011153631,0.00003686211,0.00014614337,0.0001727315,0.000008800914,0.5900506,0.000014636375,0.019183734,0.00021245416],"about_ca_topic_score_codex":0.000028310615,"about_ca_topic_score_gemma":0.0000073531114,"teacher_disagreement_score":0.32777867,"about_ca_system_score_codex":0.00006148597,"about_ca_system_score_gemma":0.0000059036847,"threshold_uncertainty_score":0.7520875},"labels":[],"label_agreement":null},{"id":"W2106308729","doi":"10.1128/aem.02437-06","title":"Genetic Relatedness of <i>Escherichia coli</i> Isolates in Interstitial Water from a Lake Huron (Canada) Beach","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fecal contamination and water quality","field":"Environmental Science","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ministry of the Environment, Conservation and Parks; University of Guelph","funders":"Ministry of Environment; Ontario Innovation Trust","keywords":"Escherichia coli; Biology; Enterobacteriaceae; Zoology; Ecology; Microbiology; Genetics; Gene","score_opus":0.003900640123265813,"score_gpt":0.16824515025209416,"score_spread":0.16434451012882834,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106308729","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982655,0.00004550179,0.0002059717,0.00006487412,0.00007738453,0.00014638861,0.00006272602,0.000006780207,0.0011248911],"genre_scores_gemma":[0.9988615,0.000012340574,0.00023185648,0.00057216705,0.000012017078,0.00000487247,0.00021450395,0.000009754857,0.00008101813],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990417,0.000038134207,0.00029966512,0.00029769904,0.00004937612,0.0002734599],"domain_scores_gemma":[0.9997399,0.00003784658,0.00004917751,0.00011190806,5.216982e-7,0.00006065442],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014950111,0.00013903089,0.00018378638,0.000019721472,0.00004083028,0.000004004809,0.00011338419,0.000118728814,0.00090393896],"category_scores_gemma":[0.0000012528004,0.0001139176,0.000019968515,0.000034538894,0.00030951662,0.000030307881,0.00017442838,0.00013380511,0.000036627083],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006964423,0.00006777346,0.058511473,0.0000032330527,0.000008281081,0.0000058726755,0.0004726643,0.0000255007,0.93922186,0.000015234671,0.00008259481,0.0015158511],"study_design_scores_gemma":[0.0011699958,0.000097453114,0.5941109,0.000007248138,0.000015577334,0.000007459396,0.00051597785,0.000047591806,0.3869246,0.00019881663,0.016603293,0.00030106236],"about_ca_topic_score_codex":0.021467011,"about_ca_topic_score_gemma":0.10312128,"teacher_disagreement_score":0.5522973,"about_ca_system_score_codex":0.00010843361,"about_ca_system_score_gemma":0.0000039117513,"threshold_uncertainty_score":0.9897498},"labels":[],"label_agreement":null},{"id":"W2106377071","doi":"10.1128/aem.01060-07","title":"Blackbirds and Song Thrushes Constitute a Key Reservoir of <i>Borrelia garinii</i> , the Causative Agent of Borreliosis in Central Europe","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":145,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Public Health Agency of Canada","funders":"Agentúra na Podporu Výskumu a Vývoja; Ministerstvo Školství, Mládeže a Tělovýchovy; Wellcome Trust","keywords":"Borrelia garinii; Biology; Borrelia; Key (lock); Tick; Zoology; Ecology; Borrelia burgdorferi; Genetics","score_opus":0.006116333128118694,"score_gpt":0.19386124725134382,"score_spread":0.18774491412322514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106377071","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940287,0.0040097046,0.000030199213,0.000058180147,0.00015589852,0.0003361725,0.00021134081,0.000013192524,0.0011566441],"genre_scores_gemma":[0.99823546,0.0013712804,0.0000288436,0.00017780719,0.000012126221,0.000011081576,0.00011098808,0.0000141902265,0.000038241822],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987473,0.00010710251,0.00040475777,0.0003270375,0.000018623052,0.00039518822],"domain_scores_gemma":[0.99935645,0.0002306927,0.00017620197,0.00019776252,0.000006755692,0.000032114975],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024864395,0.00020872556,0.0003589748,0.00008239726,0.00009331038,0.0000037927514,0.00013484464,0.00018755377,0.00009136075],"category_scores_gemma":[0.000019065708,0.0001588866,0.000046599846,0.00009573557,0.0021133604,0.00003059622,0.00024057613,0.000224491,0.000018755889],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029805308,0.00020589349,0.178581,0.00002025626,0.000140843,0.0000052842925,0.00084782415,0.000013366407,0.8176753,0.0012212943,0.00022094649,0.0007699536],"study_design_scores_gemma":[0.0021083234,0.00035107209,0.7201872,0.000034546403,0.000106132306,0.00014754962,0.001736243,0.0000011613419,0.26642364,0.00010596709,0.008539714,0.0002584781],"about_ca_topic_score_codex":0.00033530788,"about_ca_topic_score_gemma":0.00022870931,"teacher_disagreement_score":0.55125165,"about_ca_system_score_codex":0.0000380646,"about_ca_system_score_gemma":0.00002384562,"threshold_uncertainty_score":0.7786765},"labels":[],"label_agreement":null},{"id":"W2106441995","doi":"10.1128/aem.68.7.3455-3461.2002","title":"Bovine Enteroviruses as Indicators of Fecal Contamination","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Viral Infections and Immunology Research","field":"Medicine","cited_by":132,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Water Research Foundation; Water Environment Research Foundation","keywords":"Feces; Biology; Contamination; Herd; Pasture; Enterovirus; Fecal coliform; Veterinary medicine; Cattle Diseases; Genotype; Virology; Animal science; Virus; Ecology; Water quality; Genetics","score_opus":0.008428062041597434,"score_gpt":0.22333175273174888,"score_spread":0.21490369069015144,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106441995","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99514973,0.0006477734,0.000012932793,0.0001332824,0.000026672691,0.00015338024,0.000016227319,0.000009569339,0.003850418],"genre_scores_gemma":[0.9982931,0.00080852816,0.000030298886,0.00025643795,0.000015744972,0.000011711618,0.00007614893,0.000006700016,0.0005013165],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995628,0.000016225697,0.00012858397,0.0001414878,0.000022360982,0.00012853098],"domain_scores_gemma":[0.99981946,0.000018952971,0.00003780217,0.00008822363,0.0000014683103,0.00003411415],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00003987396,0.000074087686,0.00015896687,0.00010222943,0.00004702444,0.0000019388108,0.000028717639,0.00010306864,0.000950791],"category_scores_gemma":[0.0000037727493,0.00006195199,0.000026509466,0.000043355216,0.00042009284,0.000017609707,0.000054461598,0.00011413767,0.00014751965],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059296715,0.00022878453,0.044029523,0.000009495798,0.000049431692,0.0000024064448,0.0000816196,4.374199e-8,0.9335335,0.00020835525,0.00021082778,0.021586712],"study_design_scores_gemma":[0.004917344,0.0037915672,0.34460756,0.000023114177,0.00010833312,0.0006157568,0.0007864304,0.000014195347,0.5763493,0.00007583073,0.068455026,0.0002555464],"about_ca_topic_score_codex":0.0000123390255,"about_ca_topic_score_gemma":7.0774297e-7,"teacher_disagreement_score":0.3571842,"about_ca_system_score_codex":0.00002596555,"about_ca_system_score_gemma":0.0000024852834,"threshold_uncertainty_score":0.99996245},"labels":[],"label_agreement":null},{"id":"W2106633126","doi":"10.1128/aem.01240-07","title":"Direct Identification of a Bacterial Manganese(II) Oxidase, the Multicopper Oxidase MnxG, from Spores of Several Different Marine <i>Bacillus</i> Species","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Geochemistry and Elemental Analysis","field":"Earth and Planetary Sciences","cited_by":165,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"National Institute of Environmental Health Sciences; Natural Sciences and Engineering Research Council of Canada; University of California, San Diego; Bentham-Moxon Trust","keywords":"Multicopper oxidase; Chemistry; Oxidase test; Enzyme; Manganese; Biochemistry; Laccase; Organic chemistry","score_opus":0.0034968576423115984,"score_gpt":0.1495276886116089,"score_spread":0.1460308309692973,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106633126","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99792194,0.000109288834,0.000015477846,0.00003226069,0.00006364518,0.00011200836,0.0011073942,0.0000052414657,0.0006327619],"genre_scores_gemma":[0.9954843,0.00009776996,0.0000619483,0.000050984112,0.000055657667,0.0000011445283,0.0040440205,0.0000025528468,0.00020165092],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99915206,0.000023464838,0.0003381738,0.0002346762,0.000060679493,0.00019094098],"domain_scores_gemma":[0.9995599,0.00007902126,0.0001536077,0.00015953583,0.0000023927105,0.00004555601],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001409255,0.00014544198,0.00023000312,0.00002622205,0.00011721729,0.000007373039,0.00013654417,0.000070442606,0.003068554],"category_scores_gemma":[0.000002417493,0.0000958099,0.00006306005,0.000041641593,0.00040424915,0.000029571978,0.00007885737,0.00006456375,0.000014054612],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013726263,0.00006949474,0.09845,0.000009407374,0.0000587497,0.0000012349731,0.00022860305,0.00003371756,0.8986206,0.0000035815392,0.000035656976,0.002351695],"study_design_scores_gemma":[0.0003140788,0.000037115406,0.4943861,0.0000023958255,0.00004495477,0.0000050898116,0.0006163066,0.000023160048,0.5035702,0.000037120266,0.00087435334,0.00008915643],"about_ca_topic_score_codex":0.0006264732,"about_ca_topic_score_gemma":0.0006668981,"teacher_disagreement_score":0.3959361,"about_ca_system_score_codex":0.000005785738,"about_ca_system_score_gemma":0.0000022425884,"threshold_uncertainty_score":0.9978428},"labels":[],"label_agreement":null},{"id":"W2106759368","doi":"10.1128/aem.67.2.956-960.2001","title":"Specificity and Mode of Action of the Antifungal Fatty Acid <i>cis</i> -9-Heptadecenoic Acid Produced by <i>Pseudozyma flocculosa</i>","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Essential Oils and Antimicrobial Activity","field":"Agricultural and Biological Sciences","cited_by":202,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Degree of unsaturation; Sterol; Biochemistry; Phospholipid; Biology; Fatty acid; Membrane; Spore germination; Germination; Chemistry; Cholesterol; Botany; Chromatography","score_opus":0.006680839842890767,"score_gpt":0.17655734512825283,"score_spread":0.16987650528536205,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106759368","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99870354,0.00024274751,0.000009024896,0.0002559685,0.000073203344,0.00021045678,0.0003857915,0.000009636603,0.00010962392],"genre_scores_gemma":[0.99863464,0.0010218116,0.000029394396,0.00013020837,0.00005363883,0.000003967961,0.00009925759,0.0000018248641,0.000025248313],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991333,0.000048025835,0.00021753722,0.00034210592,0.000048921098,0.00021014996],"domain_scores_gemma":[0.99969,0.000029530087,0.00015860672,0.00007488547,0.0000040394793,0.000042950098],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000069936,0.00016465619,0.0002609058,0.0000061078185,0.00015124047,0.000009978593,0.00013912856,0.00013272098,0.00007654493],"category_scores_gemma":[0.0000022079612,0.00006929359,0.000063264175,0.000082998966,0.00045172827,0.000057249265,0.00017370643,0.0001260042,0.0000027430426],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007864152,0.0001837461,0.009706801,0.000011609517,0.0000151113345,2.7447138e-7,0.000028960058,7.888624e-7,0.9826492,0.000022555481,0.00021940864,0.007082885],"study_design_scores_gemma":[0.00020395369,0.00009182844,0.020989588,0.0000072868506,0.000018368164,0.000027152946,0.00008258938,0.0000028520346,0.9758907,0.000033551263,0.002523728,0.00012842091],"about_ca_topic_score_codex":0.00009288916,"about_ca_topic_score_gemma":0.00005741586,"teacher_disagreement_score":0.011282787,"about_ca_system_score_codex":0.000011818869,"about_ca_system_score_gemma":0.0000021685762,"threshold_uncertainty_score":0.28257105},"labels":[],"label_agreement":null},{"id":"W2106760880","doi":"10.1128/aem.67.11.5107-5112.2001","title":"Effects of Low Temperature and Freeze-Thaw Cycles on Hydrocarbon Biodegradation in Arctic Tundra Soil","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":152,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biodegradation; Microcosm; Hydrocarbon; Tundra; Mineralization (soil science); Environmental chemistry; Incubation; Carbon dioxide; Total petroleum hydrocarbon; Ribosomal Intergenic Spacer analysis; Chemistry; Heterotroph; Soil contamination; Ecology; Contamination; Bacteria; Biology; Arctic; Ribosomal RNA; Organic chemistry; Biochemistry; Nitrogen","score_opus":0.002040304341653063,"score_gpt":0.15563452831626454,"score_spread":0.15359422397461148,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106760880","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99916446,0.000107104985,0.0000012243894,0.000089951354,0.000044113753,0.00023614411,0.000026885187,0.000008764881,0.0003213596],"genre_scores_gemma":[0.998686,0.0006949984,0.000048012364,0.0004047338,0.000012751977,0.0000059276676,0.0000907291,0.000008947501,0.00004787801],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992087,0.00003438743,0.00017928203,0.0003305413,0.000045916666,0.00020118649],"domain_scores_gemma":[0.9997343,0.000048606507,0.00006820154,0.000095369585,3.8059892e-7,0.000053149895],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006781893,0.00016353437,0.00018123731,0.00004325414,0.000046234825,0.0000075290927,0.00006972819,0.00015577163,0.00016041855],"category_scores_gemma":[0.0000037695534,0.00013938069,0.000019342124,0.00006987859,0.0003654736,0.00004010372,0.00009599781,0.00011612699,0.000055180197],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047600963,0.000121717974,0.08370421,0.000018225854,0.000005286237,0.0000035769344,0.00011176564,0.000014211414,0.9143105,0.000015193842,0.0000516246,0.0015960534],"study_design_scores_gemma":[0.0009246578,0.000113372014,0.4159706,0.00002117044,0.000008378599,0.00002362981,0.00009716526,0.00000987409,0.58223623,0.00008755319,0.0003318384,0.00017555112],"about_ca_topic_score_codex":0.00017654426,"about_ca_topic_score_gemma":0.00016913323,"teacher_disagreement_score":0.3322664,"about_ca_system_score_codex":0.000054820404,"about_ca_system_score_gemma":0.0000018600447,"threshold_uncertainty_score":0.5683779},"labels":[],"label_agreement":null},{"id":"W2106940057","doi":"10.1128/aem.66.12.5148-5154.2000","title":"Apparent Contradiction: Psychrotolerant Bacteria from Hydrocarbon-Contaminated Arctic Tundra Soils That Degrade Diterpenoids Synthesized by Trees","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Soil Carbon and Nitrogen Dynamics","field":"Agricultural and Biological Sciences","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Tundra; Soil water; Bacteria; Mesophile; Biology; Sphingomonas; Botany; Soil microbiology; Hydrocarbon; Propagule; Chemistry; Environmental chemistry; Pseudomonas; Organic chemistry; Arctic; Ecology","score_opus":0.005300147558170824,"score_gpt":0.15612798446145268,"score_spread":0.15082783690328186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106940057","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974191,0.0009103986,0.0000017745539,0.00021173367,0.00009660243,0.00033453087,0.0006066138,0.000065231376,0.00035401437],"genre_scores_gemma":[0.9959979,0.00074531685,0.000028020819,0.0006293648,0.00009749145,0.000076764576,0.002286958,0.000004364672,0.00013379545],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99868226,0.00007074623,0.0002532961,0.00054050016,0.00006218914,0.00039101945],"domain_scores_gemma":[0.9995722,0.00012684647,0.000075959404,0.00009131615,0.0000013675228,0.00013230134],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000059754344,0.00030836652,0.0003686062,0.00001004034,0.0001831728,0.00004455362,0.00017812119,0.0002302395,0.0025496965],"category_scores_gemma":[9.349564e-7,0.00015188516,0.00008919354,0.000050824863,0.00030638842,0.0000480047,0.000042121323,0.00015241248,0.000070340044],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016359863,0.00014487068,0.005699021,0.0000017138796,0.000059382484,0.0000037084317,0.00007079254,7.9476644e-7,0.95128834,0.0000076118604,0.00010681932,0.042453337],"study_design_scores_gemma":[0.0055542607,0.0010927239,0.6172296,0.00007870728,0.00034446927,0.00034748798,0.0018355098,0.0011553775,0.30666405,0.0009792146,0.062344033,0.0023745946],"about_ca_topic_score_codex":0.00060858094,"about_ca_topic_score_gemma":0.00022499592,"teacher_disagreement_score":0.6446243,"about_ca_system_score_codex":0.00006190103,"about_ca_system_score_gemma":0.0000021918938,"threshold_uncertainty_score":0.9983621},"labels":[],"label_agreement":null},{"id":"W2106950540","doi":"10.1128/aem.69.4.1884-1889.2003","title":"Identification of <i>Streptomyces coelicolor</i> Proteins That Are Differentially Expressed in the Presence of Plant Material","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval; Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Streptomyces coelicolor; Biochemistry; Peptide mass fingerprinting; Proteome; Biology; Bacteria; Pentose phosphate pathway; Lemna minor; Chemistry; Proteomics; Metabolism; Glycolysis; Gene; Mutant; Genetics","score_opus":0.009267842974716872,"score_gpt":0.1721588550134311,"score_spread":0.16289101203871423,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106950540","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99852145,0.000035980916,0.0000021763115,0.000041019073,0.000043941294,0.0002488182,0.0010403708,0.0000030459705,0.000063217645],"genre_scores_gemma":[0.9995032,0.00011052211,0.000009638212,0.000031483152,0.0000081734,0.000029262974,0.00029671847,5.218006e-7,0.000010462489],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99944144,0.00008953766,0.00019510597,0.00013818256,0.000029154806,0.00010655655],"domain_scores_gemma":[0.9996831,0.000084918596,0.0001649352,0.000054533313,0.0000017466922,0.000010800153],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010765615,0.000079644655,0.00013260744,0.000008522085,0.000056745186,0.000010322452,0.00014224576,0.00006265561,0.00010668151],"category_scores_gemma":[0.0000037213124,0.00003127792,0.000022896229,0.00003179527,0.00015584302,0.000030535044,0.000039798735,0.000062406725,0.0000022877803],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003972911,0.00016624545,0.004990717,0.00000662059,0.0000058734727,3.5928423e-7,0.000113726346,7.3461285e-7,0.9941578,0.00006583079,0.000043339394,0.0004090186],"study_design_scores_gemma":[0.00012234887,0.00005505796,0.09162315,0.000009479551,0.000005368468,0.000017614972,0.0014097288,8.9986855e-7,0.90447223,0.000068968264,0.0021565324,0.00005863916],"about_ca_topic_score_codex":0.000078205485,"about_ca_topic_score_gemma":0.00007512548,"teacher_disagreement_score":0.0896856,"about_ca_system_score_codex":0.0000060276866,"about_ca_system_score_gemma":0.0000013457093,"threshold_uncertainty_score":0.12754765},"labels":[],"label_agreement":null},{"id":"W2107070778","doi":"10.1128/aem.02147-08","title":"Host-Directed Evolution of a Novel Lactate Oxidase in <i>Streptococcus iniae</i> Isolates from Barramundi ( <i>Lates calcarifer</i> )","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Streptococcus iniae; Biology; Barramundi; Enzyme; Microbiology; Oxidase test; Biochemistry; Gene; Lates; Fishery","score_opus":0.006034687085885846,"score_gpt":0.20970833664361999,"score_spread":0.20367364955773415,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107070778","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980346,0.00046019818,0.0000390386,0.000084946194,0.00003637191,0.0005403607,0.00024087267,0.00004274396,0.0005208802],"genre_scores_gemma":[0.9986161,0.00011456965,0.0004476903,0.0002225764,0.000022867547,0.00003989129,0.0004947195,0.000012004779,0.000029608394],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990573,0.00001669956,0.00030172948,0.0003525334,0.000027232814,0.00024453097],"domain_scores_gemma":[0.99960303,0.000052643183,0.00008817032,0.00017184368,0.000003721725,0.00008058818],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000034104854,0.00020560679,0.00037036728,0.00008954522,0.000047835452,0.000005020767,0.0000402741,0.00018654935,0.00008689082],"category_scores_gemma":[0.0000042779557,0.000177565,0.000059348888,0.00010115818,0.0001796549,0.000034194578,0.000038397116,0.00015547508,0.000018366223],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014812198,0.00081750646,0.12678772,0.0000056739664,0.000063282474,0.0000050610133,0.00009732208,0.0000042987185,0.87080777,0.00005126835,0.000023871433,0.0011880876],"study_design_scores_gemma":[0.006525434,0.00061481015,0.8231005,0.000056606925,0.00012410173,0.000065706496,0.00021671716,0.00008844844,0.16819273,0.00018483309,0.0005922914,0.00023779886],"about_ca_topic_score_codex":0.00038339815,"about_ca_topic_score_gemma":0.000026399475,"teacher_disagreement_score":0.7026151,"about_ca_system_score_codex":0.0001266149,"about_ca_system_score_gemma":0.000014031081,"threshold_uncertainty_score":0.724089},"labels":[],"label_agreement":null},{"id":"W2107118546","doi":"10.1128/aem.70.3.1487-1493.2004","title":"Use of a Novel Fluorinated Organosulfur Compound To Isolate Bacteria Capable of Carbon-Sulfur Bond Cleavage","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"North China University of Technology; Institut de Recherche pour le Développement","keywords":"Dibenzothiophene; Organosulfur compounds; Sulfur; Chemistry; Sulfone; Rhodococcus; Alkyl; Organic chemistry; Sulfoxide; Sulfide; Enzyme","score_opus":0.010657847524623162,"score_gpt":0.1805500417104014,"score_spread":0.16989219418577822,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107118546","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99874556,0.000013851413,0.000025162262,0.00006572501,0.000077849865,0.00032674542,0.0003189121,0.000013374361,0.0004128101],"genre_scores_gemma":[0.9965427,0.00004074937,0.0029016095,0.0003068558,0.000009969471,0.0000035018397,0.0001057743,0.00001787153,0.00007096532],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998874,0.000014076442,0.00037008227,0.00038284413,0.000062023246,0.00029699225],"domain_scores_gemma":[0.99949855,0.00002349761,0.00015477871,0.0002083975,0.0000019129411,0.00011286709],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000080168684,0.0002100975,0.00031406328,0.0000450424,0.000048050886,0.000008485358,0.00014972818,0.00014909344,0.0002746182],"category_scores_gemma":[0.0000048457023,0.0001930933,0.000037230548,0.00012748741,0.0004380459,0.000056004315,0.00029676978,0.000090221445,0.00007836371],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000791986,0.00025251278,0.0058070337,0.000009318744,0.000022243952,0.0000015922458,0.00032982376,0.00006703494,0.9931103,0.000035442747,0.00015070089,0.00013482623],"study_design_scores_gemma":[0.0010716579,0.00016112081,0.03899867,0.000009335513,0.00001963681,0.000031195745,0.00009994832,0.0000036710478,0.9561228,0.000011696164,0.0032495747,0.00022067071],"about_ca_topic_score_codex":0.00048583117,"about_ca_topic_score_gemma":0.00006943679,"teacher_disagreement_score":0.03698745,"about_ca_system_score_codex":0.000114473645,"about_ca_system_score_gemma":0.000008332326,"threshold_uncertainty_score":0.7874117},"labels":[],"label_agreement":null},{"id":"W2107134593","doi":"10.1128/aem.69.2.1320-1324.2003","title":"Dibenzyl Sulfide Metabolism by White Rot Fungi","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme-mediated dye degradation","field":"Agricultural and Biological Sciences","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Phanerochaete; Trametes versicolor; Laccase; Sulfoxide; Chemistry; Metabolism; Organosulfur compounds; ABTS; Chrysosporium; Sulfone; Sulfide; White rot; Biochemistry; Organic chemistry; Enzyme; Sulfur; DPPH; Antioxidant; Lignin","score_opus":0.0035930989366190135,"score_gpt":0.14351816598063444,"score_spread":0.13992506704401542,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107134593","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964022,0.0014670279,0.000008076177,0.00015405372,0.000083632454,0.00017143156,0.00025977415,0.000032538817,0.001421254],"genre_scores_gemma":[0.9969545,0.00044136218,0.00011446452,0.00063967716,0.000048018643,0.000022756445,0.0014039527,0.0000018483295,0.00037344446],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991084,0.00005262668,0.0001644521,0.00034616992,0.000038397837,0.00029000363],"domain_scores_gemma":[0.9997495,0.00005566875,0.000059689442,0.000051057556,0.0000014353861,0.00008266419],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009996211,0.00016653926,0.00017166964,0.000007900393,0.00013168708,0.000017183014,0.000096116295,0.00015465589,0.00075743307],"category_scores_gemma":[0.0000035093176,0.00007425316,0.000034894092,0.000064460815,0.00013432732,0.00004480756,0.00004858205,0.00010947327,0.00014611216],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000007204952,0.000051861905,0.0027429676,9.018904e-7,0.000010782988,5.87554e-7,0.000026808359,7.703353e-7,0.9877642,0.0004907962,0.0020219882,0.0068811383],"study_design_scores_gemma":[0.0006206654,0.000111940135,0.0662133,0.000002672916,0.000035962355,0.00005665854,0.00065411296,0.0000025057116,0.3406692,0.0005838926,0.59054506,0.00050397054],"about_ca_topic_score_codex":0.000018292785,"about_ca_topic_score_gemma":0.00002385174,"teacher_disagreement_score":0.64709496,"about_ca_system_score_codex":0.000018589339,"about_ca_system_score_gemma":0.0000013517889,"threshold_uncertainty_score":0.8293361},"labels":[],"label_agreement":null},{"id":"W2107282469","doi":"10.1128/aem.70.9.5538-5545.2004","title":"Characterization of a Highly Enriched <i>Dehalococcoides</i> -Containing Culture That Grows on Vinyl Chloride and Trichloroethene","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":230,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Centers for Disease Control and Prevention","keywords":"Dehalococcoides; 16S ribosomal RNA; Enrichment culture; Vinyl chloride; Methanogenesis; Strain (injury); Microbiology; Reductive dechlorination; Chemistry; Biology; Ribosomal RNA; Temperature gradient gel electrophoresis; Bacteria; Gene; Biochemistry; Genetics; Organic chemistry; Biodegradation","score_opus":0.0052763462985922945,"score_gpt":0.16772900226956947,"score_spread":0.16245265597097716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107282469","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988244,0.000030601364,0.000057633726,0.00014504607,0.00005864379,0.00029462588,0.00009817191,0.00001998007,0.00047089014],"genre_scores_gemma":[0.997997,0.0004729548,0.00015932217,0.0009536326,0.000025910671,0.000009354641,0.000300841,0.000013950802,0.00006706128],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99906135,0.000020651976,0.00022391729,0.00039463837,0.00006335519,0.00023611903],"domain_scores_gemma":[0.999619,0.00001808765,0.00015447206,0.00012553784,9.159866e-7,0.00008196904],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010464452,0.00021069129,0.00023624957,0.000033513123,0.00009596943,0.000011478361,0.00009797048,0.00016684634,0.00015948594],"category_scores_gemma":[0.000002974121,0.00017297667,0.00003129336,0.000068120964,0.0003528346,0.00007084277,0.00013783475,0.000116809504,0.0000681109],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012752424,0.00009120136,0.005382092,0.0000057718066,0.0000122325355,0.0000016502476,0.0006556229,0.00000738311,0.99198496,0.00013909576,0.00001577277,0.0015767027],"study_design_scores_gemma":[0.0014713759,0.00023978531,0.05207609,0.000007892541,0.000019435482,0.000028689368,0.00024151984,0.0000018829636,0.94167507,0.00012743738,0.0038739191,0.0002368792],"about_ca_topic_score_codex":0.000035481895,"about_ca_topic_score_gemma":0.000011261095,"teacher_disagreement_score":0.05030986,"about_ca_system_score_codex":0.00009044392,"about_ca_system_score_gemma":0.000003537047,"threshold_uncertainty_score":0.70537835},"labels":[],"label_agreement":null},{"id":"W2107394298","doi":"10.1128/aem.00723-08","title":"Characterization of Verotoxin-Encoding Phages from <i>Escherichia coli</i> O103:H2 Strains of Bovine and Human Origins","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Ministry of Agriculture, Food and Rural Affairs; Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Agriculture, Food and Rural Affairs","keywords":"VTEC; Biology; Escherichia coli; Restriction fragment length polymorphism; Amplicon; Gene; Microbiology; Genome; Genetics; Polymerase chain reaction","score_opus":0.007808396319154217,"score_gpt":0.19347479747991161,"score_spread":0.1856664011607574,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107394298","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986327,0.000022122349,0.00006519921,0.000023094919,0.0000469593,0.0002046975,0.00045058847,0.000009950525,0.0005446573],"genre_scores_gemma":[0.99870735,0.0002800509,0.00032876577,0.00012768405,0.000023146062,0.000009598658,0.00040151743,0.000013181056,0.000108688466],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992426,0.000021404983,0.0002615662,0.00028026747,0.000031258034,0.00016288192],"domain_scores_gemma":[0.9996489,0.000016839405,0.00015833776,0.00012307291,9.4151005e-7,0.00005187746],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00003580529,0.00015194676,0.00024224729,0.000023342458,0.00013161334,0.000004475241,0.000084455634,0.00009605207,0.00095347373],"category_scores_gemma":[8.348405e-7,0.00014827242,0.00003192934,0.000041925658,0.00066622003,0.000088719804,0.00015720769,0.00009638426,0.000018827226],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019101115,0.00011931854,0.0076747043,0.0000066551,0.000021756314,0.0000016130438,0.0004775226,0.0000014684155,0.9912244,0.000042588734,0.000026387383,0.0003844654],"study_design_scores_gemma":[0.00042555988,0.00010597356,0.32148704,0.0000069823686,0.000020127345,0.000018280694,0.00011488724,0.000002622695,0.6744153,0.000012606019,0.0032642067,0.00012641896],"about_ca_topic_score_codex":0.0003690431,"about_ca_topic_score_gemma":0.00003161254,"teacher_disagreement_score":0.31680912,"about_ca_system_score_codex":0.000046914207,"about_ca_system_score_gemma":0.0000028922366,"threshold_uncertainty_score":0.99995977},"labels":[],"label_agreement":null},{"id":"W2107470579","doi":"10.1128/aem.02024-06","title":"Comparison of Levels of Inactivation of Two Isolates of <i>Giardia lamblia</i> Cysts by UV Light","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Natural Resources; University of Alberta","funders":"Directorate for Biological Sciences; University of Alberta","keywords":"Giardia lamblia; Biology; Giardia; Gerbil; Feces; Microbiology; Inoculation; Protozoa; Immunology","score_opus":0.007963814242763009,"score_gpt":0.24891426808709938,"score_spread":0.24095045384433636,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107470579","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996288,0.0010455895,0.0011010662,0.000008820481,0.000098661796,0.0001560502,0.0003669646,0.0000049639852,0.0009298697],"genre_scores_gemma":[0.99949676,0.000057428148,0.00019844536,0.00001810235,0.0000051051697,0.0000030850674,0.00019566309,0.000006904881,0.000018498005],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991163,0.000036628197,0.00050467544,0.00015842564,0.000011845922,0.00017213501],"domain_scores_gemma":[0.9992115,0.00027287452,0.00035900404,0.0001337214,0.000010076556,0.000012860083],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015451423,0.00012418797,0.0004391685,0.000101476704,0.00003966287,6.251469e-7,0.000072137045,0.00021545024,0.000091362694],"category_scores_gemma":[0.000010986196,0.000115685296,0.000050664636,0.00006656386,0.00054098084,0.000020049254,0.00007816101,0.000109592685,0.000006704459],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000089429726,0.00041256056,0.08693463,0.000032801854,0.000103447754,1.0373981e-7,0.00029704606,0.000012626219,0.9098138,0.0013495083,0.00011256899,0.0008414723],"study_design_scores_gemma":[0.0010437926,0.0002474268,0.032780383,0.000016366983,0.000049990347,0.0000137269335,0.00040178548,9.774656e-7,0.9647693,0.00010647145,0.00047850524,0.000091290705],"about_ca_topic_score_codex":0.00005181794,"about_ca_topic_score_gemma":0.000006181873,"teacher_disagreement_score":0.05495548,"about_ca_system_score_codex":0.000016937738,"about_ca_system_score_gemma":0.000008347641,"threshold_uncertainty_score":0.47175094},"labels":[],"label_agreement":null},{"id":"W2107488826","doi":"10.1128/aem.66.9.3891-3897.2000","title":"Production and Consumption of Nitric Oxide by Three Methanotrophic Bacteria","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial metabolism and enzyme function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute; McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Nitrite; Nitrite reductase; Denitrification; Nitrate; Nitrate reductase; Chemistry; Aerobic denitrification; Food science; Nitrification; Biochemistry; Biology; Denitrifying bacteria; Nitrogen; Organic chemistry","score_opus":0.0038555906497647137,"score_gpt":0.16482593761007966,"score_spread":0.16097034696031495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107488826","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99769205,0.0018573923,0.00006309509,0.000019427887,0.000044772318,0.00014259528,0.00013015495,0.0000048596953,0.000045624794],"genre_scores_gemma":[0.9950249,0.0037286289,0.00027612285,0.00009888244,0.000055157532,0.000010650236,0.0005444007,0.000010741549,0.00025049606],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994032,0.000023217606,0.00013793964,0.00029321064,0.000015515934,0.0001269397],"domain_scores_gemma":[0.9997991,0.0000032944843,0.000046761983,0.00011748543,0.0000016504765,0.000031718468],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000060816248,0.00011624736,0.00013294606,0.000020683072,0.00004723451,0.0000030518377,0.000036386435,0.00013371848,0.00017100744],"category_scores_gemma":[0.0000023087186,0.000109810375,0.000019144452,0.000018572184,0.00021908304,0.0000033638155,0.000038670078,0.00004669949,0.000015723264],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001179852,0.00003701921,0.0016054823,0.00001273311,0.00002358322,8.289744e-8,0.000007859368,0.0000025964093,0.99038625,0.0000088064435,0.0008520681,0.006945558],"study_design_scores_gemma":[0.00041882586,0.000076368626,0.025583617,0.0000036537317,0.000035027813,0.00006798661,0.000015034383,9.1304065e-7,0.9399897,0.000031711646,0.033631325,0.00014585252],"about_ca_topic_score_codex":0.000012631749,"about_ca_topic_score_gemma":0.0000032332732,"teacher_disagreement_score":0.050396543,"about_ca_system_score_codex":0.000004767601,"about_ca_system_score_gemma":0.000002649912,"threshold_uncertainty_score":0.44779372},"labels":[],"label_agreement":null},{"id":"W2107495600","doi":"10.1128/aem.70.8.4864-4871.2004","title":"Characterization of Coliphage PR772 and Evaluation of Its Use for Virus Filter Performance Testing","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Coliphage; Bacteriophage; Virus; Filtration (mathematics); Biology; Genome; Computational biology; Virology; Genetics; Escherichia coli; Gene; Mathematics","score_opus":0.023139801798033748,"score_gpt":0.21956782830026197,"score_spread":0.19642802650222824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107495600","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990943,0.000017024953,0.00009653502,0.000012215921,0.000035437428,0.00044876803,0.00021863056,0.0000043374303,0.00007273056],"genre_scores_gemma":[0.9987643,0.00009530015,0.00082057586,0.00006176024,0.000010190812,0.00003480155,0.00017941478,0.00000836489,0.00002533703],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994704,0.000013056628,0.00018367163,0.0001859472,0.00003109576,0.00011584516],"domain_scores_gemma":[0.99974895,0.000025845871,0.00012699785,0.00007006395,0.000004034564,0.000024116935],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000110312365,0.000091874404,0.00012368757,0.000019587469,0.00006444055,0.000006155621,0.000039220882,0.00006147062,0.00015630726],"category_scores_gemma":[0.0000059794656,0.000087611406,0.000015982308,0.000031961583,0.00018479358,0.00014134757,0.000080504746,0.00003843642,0.000008561495],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026305193,0.00006207653,0.0017413304,0.000017278075,0.000008187241,4.6999954e-8,0.0001478614,0.00012708962,0.9911866,0.000011205195,0.0000024834503,0.006669495],"study_design_scores_gemma":[0.00065902964,0.000108523454,0.27347982,0.000012567359,0.000036995018,0.000018067589,0.000023392091,0.00016416256,0.72470486,0.00001275207,0.0006971279,0.000082698316],"about_ca_topic_score_codex":0.000032809614,"about_ca_topic_score_gemma":0.000009708299,"teacher_disagreement_score":0.27173847,"about_ca_system_score_codex":0.000054215277,"about_ca_system_score_gemma":0.0000039791335,"threshold_uncertainty_score":0.35726896},"labels":[],"label_agreement":null},{"id":"W2107711768","doi":"10.1128/aem.01930-08","title":"Helix α4 of the <i>Bacillus thuringiensis</i> Cry1Aa Toxin Plays a Critical Role in the Postbinding Steps of Pore Formation","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect Resistance and Genetics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Mutant; Bacillus thuringiensis; Dithiothreitol; Biochemistry; Biophysics; Spodoptera; Alpha helix; Helix (gastropod); Biology; Protein structure; Circular dichroism; Chemistry; Cell biology; Enzyme; Bacteria; Recombinant DNA; Genetics","score_opus":0.004036116717552832,"score_gpt":0.17339642445914819,"score_spread":0.16936030774159536,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107711768","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998602,0.0004275566,0.000030508934,0.000082700455,0.000021841564,0.00014725934,0.00006705645,0.0000010257352,0.00062006025],"genre_scores_gemma":[0.99912673,0.00035572282,0.00008706509,0.0002951042,0.000020533782,0.0000095279875,0.00008385078,0.000005842717,0.000015611507],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99944824,0.00004078101,0.0001812676,0.00013965029,0.00003736495,0.00015270416],"domain_scores_gemma":[0.99973315,0.000021147667,0.00005846023,0.00017129358,0.0000027651508,0.000013186184],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000087289496,0.00009236738,0.00010981151,0.000017034003,0.00007290025,0.0000018328075,0.00012981953,0.000112940776,0.0000074597074],"category_scores_gemma":[0.0000063880843,0.00006141753,0.000043437663,0.000031874904,0.00035150573,0.0000021349135,0.00010091864,0.000070045935,0.0000012957757],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037283662,0.000054231226,0.0026222186,0.000012395861,0.0000074160225,6.769629e-7,0.00041662442,0.000011638197,0.996367,0.00024327959,0.00008053151,0.0001467027],"study_design_scores_gemma":[0.00030123812,0.00011825682,0.013230307,0.000007602289,0.00000863126,0.000108107866,0.00095952075,0.0000037904683,0.98314136,0.00012549433,0.0019110563,0.00008465936],"about_ca_topic_score_codex":0.000005576379,"about_ca_topic_score_gemma":0.000017913178,"teacher_disagreement_score":0.013225665,"about_ca_system_score_codex":0.000008526148,"about_ca_system_score_gemma":0.000008709787,"threshold_uncertainty_score":0.2504534},"labels":[],"label_agreement":null},{"id":"W2107796268","doi":"10.1128/aem.00063-11","title":"Design and Verification of a Pangenome Microarray Oligonucleotide Probe Set for Dehalococcoides spp","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Ontario Institute for Cancer Research; University of Toronto","funders":"Helmholtz-Zentrum für Umweltforschung; Joint Genome Institute; University Health Network","keywords":"Dehalococcoides; Biology; Computational biology; Genome; Genetics; Gene; Chemistry","score_opus":0.021863501411104505,"score_gpt":0.19057256197636283,"score_spread":0.1687090605652583,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107796268","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959673,0.0001115551,0.0026299981,0.000024314357,0.00003103235,0.00067952106,0.00007082764,0.000012852205,0.0004725934],"genre_scores_gemma":[0.9851465,0.00015026782,0.014127734,0.00026372072,0.000007978236,0.000070170165,0.00017223963,0.000014393378,0.000046992387],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99913335,0.00008580401,0.00021045879,0.00031222464,0.000013365309,0.00024477227],"domain_scores_gemma":[0.99955714,0.000087632114,0.000112098045,0.0001911675,0.0000011198772,0.000050815226],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020264182,0.00016150637,0.0002309882,0.000027034888,0.00015318136,0.0000028334903,0.00015383346,0.00021330084,0.00089667324],"category_scores_gemma":[0.0000029159298,0.00015341649,0.00002766571,0.000031440657,0.0009626401,0.000040530515,0.00020786826,0.00012320197,0.00006464224],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001564325,0.00009429121,0.0029158948,0.0000145694585,0.000024676458,4.0951747e-7,0.0012777406,0.000008852032,0.99383235,0.00018505337,0.00027087133,0.0012188689],"study_design_scores_gemma":[0.002173478,0.0012294552,0.15571555,0.000010798904,0.0001324234,0.0001436293,0.0011460021,0.000046627818,0.80985767,0.00852393,0.020263428,0.0007569709],"about_ca_topic_score_codex":0.000070450325,"about_ca_topic_score_gemma":0.00002662904,"teacher_disagreement_score":0.18397464,"about_ca_system_score_codex":0.000029576506,"about_ca_system_score_gemma":0.0000035614357,"threshold_uncertainty_score":0.98179436},"labels":[],"label_agreement":null},{"id":"W2107810178","doi":"10.1128/aem.02469-07","title":"Gene Expression by the Sulfate-Reducing Bacterium <i>Desulfovibrio vulgaris</i> Hildenborough Grown on an Iron Electrode under Cathodic Protection Conditions","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Corrosion Behavior and Inhibition","field":"Materials Science","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Nova Chemicals (Canada); University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Desulfovibrio vulgaris; Hydrogenase; Desulfovibrio; Sulfate-reducing bacteria; Gene; Biology; Chemistry; Gene expression; Biochemistry; Bacteria; Molecular biology; Enzyme; Genetics","score_opus":0.010716659826048849,"score_gpt":0.1999660765311207,"score_spread":0.18924941670507184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107810178","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979535,0.000062313135,0.0009090336,0.00012546736,0.00015489425,0.0004322897,0.00024825256,0.00005541816,0.00005885407],"genre_scores_gemma":[0.99788713,0.00010285522,0.000107312066,0.00041257328,0.000076859236,0.00014021399,0.0011611962,0.000022391418,0.00008949134],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99877924,0.00011518359,0.00021955193,0.0005061616,0.00006559643,0.00031429605],"domain_scores_gemma":[0.9995524,0.000023536335,0.000101129466,0.00025143992,0.0000028235838,0.00006865213],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011858498,0.00020762335,0.00016222027,0.00003157894,0.0007254619,0.00002795714,0.00011308441,0.0001537077,0.0003370727],"category_scores_gemma":[0.0000013123391,0.0001558381,0.000032712636,0.000038672984,0.00038283187,0.00012279666,0.000072049326,0.00018999861,0.00010873159],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007194591,0.00017797132,0.000044356282,0.000002533589,5.641413e-7,0.0000011590926,0.00022070546,0.00008413817,0.99843967,0.00001862402,0.00075789494,0.00018042358],"study_design_scores_gemma":[0.00046687343,0.000265099,0.0013530975,0.000006378691,0.000014510575,0.0002703925,0.00013802378,0.000006271039,0.99653023,0.00004051686,0.00071192556,0.00019664965],"about_ca_topic_score_codex":0.000076113356,"about_ca_topic_score_gemma":0.0000037000782,"teacher_disagreement_score":0.0019094221,"about_ca_system_score_codex":0.00010117883,"about_ca_system_score_gemma":0.000010685984,"threshold_uncertainty_score":0.63548934},"labels":[],"label_agreement":null},{"id":"W2107974010","doi":"10.1128/aem.67.4.1565-1574.2001","title":"Bacterial Diversity and Community Structure in an Aerated Lagoon Revealed by Ribosomal Intergenic Spacer Analyses and 16S Ribosomal DNA Sequencing","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":103,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Phylotype; Biology; Ribosomal Intergenic Spacer analysis; Ribosomal DNA; 16S ribosomal RNA; Library; Ribosomal RNA; Proteobacteria; Terminal restriction fragment length polymorphism; Restriction fragment length polymorphism; Species richness; Botany; Ecology; Phylogenetic tree; Bacteria; Genetics; Gene; Polymerase chain reaction","score_opus":0.018483430623685352,"score_gpt":0.2233113560330167,"score_spread":0.20482792540933134,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107974010","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99927354,0.000071549926,0.000004892135,0.000051465573,0.000051336705,0.00020625893,0.00017895944,0.000017535798,0.00014449013],"genre_scores_gemma":[0.99841416,0.00017122424,0.00008907445,0.000378027,0.000017618102,0.0000042065885,0.00087711785,0.000012227078,0.000036362442],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99836844,0.0006234398,0.00021977571,0.0003915836,0.000028024984,0.00036870706],"domain_scores_gemma":[0.9994614,0.00009546707,0.00008956921,0.00023608515,0.0000011024543,0.00011635871],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00019294769,0.0002675563,0.00036469437,0.000045066663,0.0011197149,0.0000150946125,0.00020011487,0.00031688792,0.0019036703],"category_scores_gemma":[0.000004942056,0.00025848392,0.000022918211,0.0000806296,0.0010782713,0.00014629356,0.002448868,0.0006230496,0.00001309216],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018201023,0.00008986625,0.17858784,0.000004942852,0.00002121634,0.000004393319,0.001313756,0.000010206552,0.8193915,0.0000050612093,0.00010915923,0.00028006575],"study_design_scores_gemma":[0.003165308,0.0007950293,0.9348431,0.000010678056,0.00008739499,0.0003590084,0.0028904527,0.000057993242,0.05417248,0.0010305048,0.0017869964,0.00080102513],"about_ca_topic_score_codex":0.0013035209,"about_ca_topic_score_gemma":0.0058333375,"teacher_disagreement_score":0.76521903,"about_ca_system_score_codex":0.0001377925,"about_ca_system_score_gemma":0.000003633557,"threshold_uncertainty_score":0.99998677},"labels":[],"label_agreement":null},{"id":"W2108138142","doi":"10.1128/aem.68.11.5671-5684.2002","title":"Cloning and Characterization of a Gene Cluster Involved in Cyclopentanol Metabolism in <i>Comamonas</i> sp. Strain NCIMB 9872 and Biotransformations Effected by <i>Escherichia coli</i> -Expressed Cyclopentanone 1,2-Monooxygenase","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":122,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; University of New Brunswick; Biotechnology Research Institute","funders":"","keywords":"Monooxygenase; Biology; Gene cluster; Escherichia coli; Cyclopentanone; Dehydrogenase; Gene; Biochemistry; Alcohol dehydrogenase; Pseudomonas putida; Open reading frame; Microbiology; Enzyme; Cytochrome P450; Peptide sequence","score_opus":0.002688470833750174,"score_gpt":0.154696967058851,"score_spread":0.15200849622510082,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108138142","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973424,0.0015464296,0.00015677747,0.000071816154,0.000041657397,0.0004549568,0.00035339143,0.0000068059367,0.000025729603],"genre_scores_gemma":[0.99382335,0.0042071887,0.0003506912,0.00020921644,0.000028554234,0.000038964514,0.0013018491,0.00001804639,0.00002216264],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99903935,0.000055924018,0.0003025846,0.00036439448,0.000026350232,0.00021141594],"domain_scores_gemma":[0.99974394,0.0000056203116,0.00007730674,0.000120214005,0.000002669469,0.00005026911],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011351035,0.00019852181,0.00026234673,0.000067682435,0.000041281983,0.000011264858,0.000058955495,0.00018197211,0.000009611924],"category_scores_gemma":[0.0000028842398,0.0001996597,0.000019881629,0.00007834325,0.00015181873,0.000013226292,0.000060405247,0.00010784697,0.0000010470422],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006396863,0.000118253425,0.0011138786,0.000033274595,0.000021796197,5.8605326e-7,0.00019697534,0.000010907467,0.9975045,0.000006764739,0.000025999747,0.00090310926],"study_design_scores_gemma":[0.0018802375,0.00006375669,0.020145034,0.000013677967,0.00001887912,0.00001809845,0.000082556515,0.000061543295,0.973437,0.0000034828024,0.004055781,0.0002199678],"about_ca_topic_score_codex":0.000026988453,"about_ca_topic_score_gemma":0.00001836398,"teacher_disagreement_score":0.0240675,"about_ca_system_score_codex":0.000011959632,"about_ca_system_score_gemma":0.0000031805814,"threshold_uncertainty_score":0.81418866},"labels":[],"label_agreement":null},{"id":"W2108397144","doi":"10.1128/aem.01450-09","title":"Searching for a “Hidden” Prophage in a Marine Bacterium","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Xiamen University; National Science Foundation","keywords":"Prophage; Lysogenic cycle; Biology; ORFS; Genome; Genetics; Bacterial genome size; Gene; Bacteriophage; Open reading frame; Escherichia coli; Peptide sequence","score_opus":0.0046266897152222415,"score_gpt":0.200471445713166,"score_spread":0.19584475599794376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108397144","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964241,0.000013684851,0.000056349378,0.00026257525,0.00004633978,0.0004262369,0.000036323017,0.000015719475,0.002718684],"genre_scores_gemma":[0.99605143,0.000035210167,0.002457707,0.0008098987,0.000029114792,0.000038451177,0.00015150305,0.000010745509,0.0004159479],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991341,0.000015982885,0.00017183769,0.00034066162,0.000018511158,0.0003188853],"domain_scores_gemma":[0.9997665,0.000022705324,0.00004031739,0.00011355559,3.227302e-7,0.00005657281],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0000770622,0.00014546794,0.00015899647,0.00003272218,0.00008889346,0.000017005968,0.00009692547,0.00008136174,0.00096133014],"category_scores_gemma":[0.0000017223791,0.00013467175,0.000035955705,0.00004055817,0.00014597474,0.00007214398,0.00015815502,0.00012919927,0.00011517415],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005267829,0.000113456845,0.0009643497,0.000003101009,0.000003820405,0.0000030181404,0.0001655595,0.000004911167,0.95665437,0.00007309819,0.00009627733,0.04186537],"study_design_scores_gemma":[0.0028632537,0.000651212,0.75614554,0.000015719503,0.000027959706,0.0003272848,0.00041713897,0.00006290833,0.16204765,0.001844597,0.07485863,0.00073812396],"about_ca_topic_score_codex":0.000064529064,"about_ca_topic_score_gemma":0.000049314192,"teacher_disagreement_score":0.7946067,"about_ca_system_score_codex":0.00009667566,"about_ca_system_score_gemma":0.0000020716293,"threshold_uncertainty_score":0.9999519},"labels":[],"label_agreement":null},{"id":"W2108424318","doi":"10.1128/aem.72.2.1346-1354.2006","title":"Differential Effects of Nitrogenous Fertilizers on Methane-Consuming Microbes in Rice Field and Forest Soils","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":247,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Dalhousie University","keywords":"Microcosm; Soil water; Paddy field; Anaerobic oxidation of methane; Methanotroph; Microbial population biology; Ecosystem; Stable-isotope probing; Fertilizer; Agronomy; Environmental chemistry; Biology; Methane; Biodiversity; Environmental science; Ecology; Microorganism; Chemistry; Bacteria","score_opus":0.002514098834104378,"score_gpt":0.16522476016472243,"score_spread":0.16271066133061804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108424318","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987679,0.00016806672,0.000015231081,0.000035321056,0.000053498217,0.00025282652,0.00001537277,0.000008551228,0.0006832133],"genre_scores_gemma":[0.9992766,0.0001250938,0.00010205813,0.00033077114,0.000012055675,0.000016989603,0.00008966238,0.000010759713,0.000036015008],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990424,0.00010412103,0.0002206539,0.0003090454,0.000022038485,0.00030173457],"domain_scores_gemma":[0.9993631,0.00036593276,0.000077315024,0.0001572767,4.140187e-7,0.000035918805],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005671965,0.0001924225,0.00030275475,0.000050422404,0.00009896935,0.0000037130483,0.0001300687,0.0002101243,0.00030971694],"category_scores_gemma":[0.000004821995,0.00017977926,0.000033886117,0.000042849162,0.000585646,0.000025166464,0.00028257055,0.00021943811,0.000032183434],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001259792,0.00021192848,0.037969444,0.000032720825,0.000013873527,0.0000041326884,0.00015699443,0.00002892483,0.960442,0.00009394658,0.000115545365,0.0008044936],"study_design_scores_gemma":[0.0016861487,0.00044514725,0.27556583,0.000016247817,0.000037715516,0.00005059272,0.00013882336,0.000009969225,0.7193342,0.0017218821,0.0006763976,0.00031707817],"about_ca_topic_score_codex":0.0007866828,"about_ca_topic_score_gemma":0.00065967615,"teacher_disagreement_score":0.24110784,"about_ca_system_score_codex":0.000041576404,"about_ca_system_score_gemma":0.0000024063713,"threshold_uncertainty_score":0.7331186},"labels":[],"label_agreement":null},{"id":"W2108513111","doi":"10.1128/aem.68.6.3169-3171.2002","title":"Rapid Detection of <i>Escherichia coli</i> O157:H7 with Multiplex Real-Time PCR Assays","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":130,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Escherichia coli; STX2; SYBR Green I; Primer (cosmetics); Melting curve analysis; Shiga toxin; Multiplex; Multiplex polymerase chain reaction; Biology; Real-time polymerase chain reaction; Polymerase chain reaction; Enterobacteriaceae; Molecular biology; Microbiology; Gene; Chemistry; Genetics","score_opus":0.006178496765277332,"score_gpt":0.17808625363026045,"score_spread":0.17190775686498314,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108513111","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99580556,0.00080723554,0.00006357465,0.0000327761,0.000019082352,0.00027977864,0.00006019872,0.000011885234,0.0029199326],"genre_scores_gemma":[0.9953492,0.003250296,0.0006420444,0.0001251899,0.000050261064,0.00005392131,0.00011948511,0.000024256116,0.0003853365],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99905854,0.0000536771,0.00016889766,0.00038133533,0.000047940957,0.00028961682],"domain_scores_gemma":[0.9996116,0.000022609076,0.00008324459,0.00021240357,0.0000058798237,0.00006422808],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000087181514,0.00019365664,0.00022469906,0.000027175509,0.000102640835,0.0000052632795,0.00010393016,0.00016290904,0.0000897595],"category_scores_gemma":[0.0000058010205,0.00016450854,0.000039924256,0.00005065639,0.0005112632,0.0000029280034,0.00017140726,0.00010418496,0.000027585987],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013143553,0.000118380056,0.0011314319,0.000014415394,0.00010402131,0.0000013060389,0.0000560698,0.000006090277,0.99548256,0.000006033331,0.00027605827,0.0026721887],"study_design_scores_gemma":[0.0013179261,0.00082778995,0.006835963,0.0000047971344,0.000028996448,0.000027780137,0.00015753804,0.00006317117,0.9641935,0.000004716695,0.026271408,0.000266383],"about_ca_topic_score_codex":0.000020168603,"about_ca_topic_score_gemma":0.000013834958,"teacher_disagreement_score":0.031289037,"about_ca_system_score_codex":0.00001878366,"about_ca_system_score_gemma":0.000005427591,"threshold_uncertainty_score":0.6708464},"labels":[],"label_agreement":null},{"id":"W2108605424","doi":"10.1128/aem.07097-11","title":"Characterization of DC1, a Broad-Host-Range Bcep22-Like Podovirus","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Burkholderia cenocepacia; Biology; Burkholderia; Burkholderia cepacia complex; Microbiology; Host (biology); Genetics; Bacteria","score_opus":0.018838260287656162,"score_gpt":0.17910813450884605,"score_spread":0.16026987422118988,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108605424","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99795854,0.00017260479,0.000001544529,0.0000360218,0.000032416923,0.00017382298,0.00096493616,0.000015749307,0.00064438453],"genre_scores_gemma":[0.9985031,0.0007194202,0.000033623848,0.00018139576,0.000028172224,0.000018157316,0.00041845418,9.969498e-7,0.00009667907],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993558,0.000028923616,0.00014248039,0.0002211341,0.00003543933,0.00021621605],"domain_scores_gemma":[0.9998156,0.000036156227,0.00006256809,0.000037579026,0.0000021109715,0.000045977868],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005837948,0.00011345345,0.00016927837,0.000011357297,0.0000925681,0.0000040456853,0.000111097834,0.00008518585,0.00047803883],"category_scores_gemma":[0.0000017571239,0.000048957423,0.00002956362,0.000047040874,0.00027774993,0.000033405388,0.00015456295,0.00006573102,0.00006598424],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055365366,0.00007973322,0.0045655617,0.000003604748,0.00001830513,0.0000014440142,0.00015618994,6.2009793e-9,0.98830205,0.000042742126,0.00004827709,0.006726701],"study_design_scores_gemma":[0.00022523302,0.0002099481,0.5279012,0.0000047045505,0.000011851253,0.000021682468,0.00029079776,9.120194e-7,0.45613545,0.00005804278,0.014964125,0.00017609562],"about_ca_topic_score_codex":0.000090865586,"about_ca_topic_score_gemma":0.000036366528,"teacher_disagreement_score":0.5321666,"about_ca_system_score_codex":0.000011228618,"about_ca_system_score_gemma":9.778197e-7,"threshold_uncertainty_score":0.52341896},"labels":[],"label_agreement":null},{"id":"W2108718991","doi":"10.1128/aem.01541-09","title":"Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":21757,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; University of British Columbia","funders":"Alfred P. Sloan Foundation; National Science Foundation","keywords":"Laptop; Software; Pyrosequencing; Computer science; Metagenomics; Data mining; Computational biology; Biology; Software engineering; Genetics; Gene; Programming language; Operating system","score_opus":0.02640740679992318,"score_gpt":0.2161884023350541,"score_spread":0.18978099553513092,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108718991","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99709284,0.00006804337,0.00096475316,0.0001127795,0.00007501467,0.0007247939,0.00008310247,0.000056650526,0.0008220207],"genre_scores_gemma":[0.99322253,0.00008719375,0.0029658529,0.0021014677,0.00003381713,0.000030108475,0.0014057406,0.00002819062,0.00012511603],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984224,0.00024340634,0.00036845997,0.00036147857,0.000031562937,0.00057270564],"domain_scores_gemma":[0.99898416,0.0002649575,0.00015889634,0.0004750567,0.0000028234413,0.000114112874],"candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.0005457187,0.00034806592,0.0005265763,0.00005791284,0.0017204243,0.00007220337,0.0007234368,0.00028661353,0.0005420402],"category_scores_gemma":[0.000010952748,0.00036016532,0.000045814544,0.00006699577,0.0010053543,0.00019421332,0.0018605966,0.00076867436,0.00004252332],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002512818,0.00029190615,0.01975383,0.000015813997,0.000049188933,9.56704e-7,0.0035632397,0.00022846214,0.9655053,0.00017533745,0.0018665721,0.008298136],"study_design_scores_gemma":[0.042873014,0.00872196,0.43420753,0.000347601,0.0009877654,0.0040923236,0.07115395,0.0024391483,0.15986788,0.02880782,0.23683807,0.009662941],"about_ca_topic_score_codex":0.0007727425,"about_ca_topic_score_gemma":0.0012331513,"teacher_disagreement_score":0.8056374,"about_ca_system_score_codex":0.00011648401,"about_ca_system_score_gemma":0.00000766711,"threshold_uncertainty_score":0.999885},"labels":[],"label_agreement":null},{"id":"W2108935005","doi":"10.1128/aem.06412-11","title":"NAD(P) <sup>+</sup> -Malic Enzyme Mutants of Sinorhizobium sp. Strain NGR234, but Not Azorhizobium caulinodans ORS571, Maintain Symbiotic N <sub>2</sub> Fixation Capabilities","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Biotechnology and Biological Sciences Research Council; Ontario Genomics Institute; Genome Canada","keywords":"Biology; Biochemistry; Citric acid cycle; Malic enzyme; Phosphoenolpyruvate carboxylase; Sinorhizobium meliloti; Phosphoenolpyruvate carboxykinase; Mutant; Rhizobiaceae; Bacteria; Pyruvate kinase; Rhizobium leguminosarum; Rhizobium; Glycolysis; Microbiology; Enzyme; Symbiosis; Gene; Dehydrogenase","score_opus":0.006657929795928911,"score_gpt":0.16669527931873773,"score_spread":0.16003734952280882,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108935005","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99708843,0.0002574372,0.0000028450963,0.00027075305,0.00011624379,0.00048355493,0.0016119453,0.000057995167,0.000110794936],"genre_scores_gemma":[0.99803376,0.000047664198,0.00009105689,0.00045309056,0.00024697054,0.00003709228,0.0010308617,0.00000883058,0.000050656305],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977217,0.00016268122,0.0005414207,0.0005831355,0.00012930442,0.00086180377],"domain_scores_gemma":[0.999122,0.00027254107,0.00022639708,0.0001605397,0.000009468126,0.0002090479],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035972477,0.00042436644,0.0004950267,0.000033852033,0.00023940617,0.000025042826,0.00027232646,0.00040508818,0.00033286767],"category_scores_gemma":[0.000018847948,0.00023447874,0.00014310968,0.00013812495,0.00064597186,0.00014186604,0.00021206416,0.00023663773,0.00014679084],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054748667,0.00023822677,0.009473062,0.000025359555,0.000058308276,0.0000016014106,0.00046605515,0.00000398349,0.9869376,0.00039288565,0.00007863958,0.0022695642],"study_design_scores_gemma":[0.00040046006,0.0002243272,0.032814823,0.000013465177,0.0000653442,0.00010289757,0.0031206291,0.0000075769535,0.9622602,0.00017169827,0.00038302602,0.0004355815],"about_ca_topic_score_codex":0.00017734665,"about_ca_topic_score_gemma":0.00005416668,"teacher_disagreement_score":0.024677392,"about_ca_system_score_codex":0.00015169499,"about_ca_system_score_gemma":0.000010505579,"threshold_uncertainty_score":0.9561766},"labels":[],"label_agreement":null},{"id":"W2109013142","doi":"10.1128/aem.70.10.6333-6336.2004","title":"Stabilization of Oil-Water Emulsions by Hydrophobic Bacteria","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pickering emulsions and particle stabilization","field":"Materials Science","cited_by":204,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Emulsion; Coalescence (physics); Surface tension; Chemical engineering; Bacteria; Chemistry; Water in oil; Bacterial growth; Oil droplet; Organic chemistry; Geology; Biology","score_opus":0.0036803326645477104,"score_gpt":0.17229203678105112,"score_spread":0.16861170411650342,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109013142","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992131,0.00008522805,0.00029733914,0.000041882784,0.00006674489,0.00006243778,0.00011336833,0.00001744002,0.0001024605],"genre_scores_gemma":[0.9990787,0.00009865211,0.00040046134,0.000055841974,0.000009239458,0.000010919067,0.00029965158,0.000009573476,0.000036971],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993968,0.00001822498,0.00017688409,0.00020875264,0.000025777827,0.00017354086],"domain_scores_gemma":[0.99978423,0.0000106598845,0.000040090326,0.00012334387,0.000001924818,0.000039761708],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000058934434,0.000092911294,0.00012384307,0.000020649171,0.00008078471,0.000007369646,0.000059982285,0.000066086875,0.0004219753],"category_scores_gemma":[0.0000011651533,0.00007034676,0.000015417369,0.000023577997,0.00021975998,0.000041455914,0.00007965539,0.00003055085,0.000080382444],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014418948,0.00008086035,0.00020077496,0.000008987881,0.0000022349839,1.8648288e-7,0.00030935986,0.00016430188,0.99866456,0.0001112295,0.000017891633,0.000425179],"study_design_scores_gemma":[0.00045981904,0.000053342632,0.0004461953,0.0000044996805,0.0000070746305,0.000008025413,0.00011021359,0.0000070344445,0.9963736,0.00019680685,0.0022394275,0.00009396203],"about_ca_topic_score_codex":0.000020161657,"about_ca_topic_score_gemma":0.0000031101406,"teacher_disagreement_score":0.0022909758,"about_ca_system_score_codex":0.00003142442,"about_ca_system_score_gemma":0.0000034515238,"threshold_uncertainty_score":0.4620334},"labels":[],"label_agreement":null},{"id":"W2109115572","doi":"10.1128/aem.02662-06","title":"Use of PCR-Targeted Mutagenesis To Disrupt Production of Fusaricidin-Type Antifungal Antibiotics in <i>Paenibacillus polymyxa</i>","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Paenibacillus polymyxa; Biology; Leptosphaeria maculans; Nonribosomal peptide; Microbiology; Genetics; Mutagenesis; Gene; Mutant; Bacteria; Biosynthesis","score_opus":0.008352990882778879,"score_gpt":0.1962489506174829,"score_spread":0.18789595973470402,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109115572","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992295,0.00019248114,0.00003460571,0.000023080862,0.0002120391,0.00019940932,0.0000669226,0.000003228237,0.00003876321],"genre_scores_gemma":[0.9981711,0.00014158052,0.0011287457,0.00011032158,0.00005402174,2.3881188e-7,0.0003268858,0.000015011171,0.00005210015],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99908596,0.000021608877,0.00029705302,0.00032800483,0.000028312197,0.00023904115],"domain_scores_gemma":[0.9996559,0.00001074933,0.00009785217,0.00018134173,0.000006321317,0.000047805337],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013440184,0.00014534683,0.00021951551,0.00006704433,0.000029566054,0.0000035215705,0.000055456552,0.00018706305,0.0000068669933],"category_scores_gemma":[0.000011398644,0.00014012308,0.00003318026,0.00008938789,0.00018593989,0.0000035361084,0.000119432,0.000051878935,0.0000022628667],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036161765,0.0001076925,0.019057421,0.000013917153,0.000024519622,0.0000015953407,0.000050734627,0.000016983027,0.97768533,0.000016642469,0.000044081833,0.002619476],"study_design_scores_gemma":[0.0002383373,0.00023535201,0.051582787,0.000006411191,0.000013361673,0.000026954365,0.000109767694,7.7162593e-7,0.9454826,0.0000013243192,0.0021619713,0.00014035283],"about_ca_topic_score_codex":0.000043066128,"about_ca_topic_score_gemma":0.000030332918,"teacher_disagreement_score":0.032525368,"about_ca_system_score_codex":0.00001232459,"about_ca_system_score_gemma":0.000008412842,"threshold_uncertainty_score":0.57140535},"labels":[],"label_agreement":null},{"id":"W2109463638","doi":"10.1128/aem.01059-07","title":"Genetically Closely Related but Phenotypically Divergent <i>Trichoderma</i> Species Cause Green Mold Disease in Oyster Mushroom Farms Worldwide","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fungal Biology and Applications","field":"Medicine","cited_by":142,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Nemzeti Kutatási és Technológiai Hivatal; Magyar Tudományos Akadémia; Hungarian Scientific Research Fund; Austrian Science Fund","keywords":"Biology; Trichoderma; Mushroom; Trichoderma harzianum; Hypocrea; Internal transcribed spacer; Clade; Oyster; Agaricales; Botany; Ganoderma; Agaricus bisporus; Phylogenetic tree; Genetics; Biological pest control; Gene; Taxonomy (biology); Ecology","score_opus":0.007628303305940196,"score_gpt":0.20111486026081465,"score_spread":0.19348655695487446,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109463638","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99561226,0.000804568,0.00018126435,0.0011236417,0.000053743726,0.00054819195,0.00013250805,0.000034310684,0.0015095182],"genre_scores_gemma":[0.99434483,0.00040979378,0.00044430935,0.002365803,0.000066752415,0.000034935863,0.0005857514,0.000020399619,0.0017274537],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998586,0.000028188759,0.0004030599,0.0005015491,0.000048402402,0.0004328245],"domain_scores_gemma":[0.9993471,0.00009185231,0.0000644055,0.00025406733,0.000003321809,0.00023925086],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001318902,0.00023320687,0.00030062872,0.00009232956,0.00009314775,0.0000047167887,0.00010216684,0.00023505179,0.0002624547],"category_scores_gemma":[0.0000055939377,0.00019791725,0.00006098858,0.00009884176,0.00049322966,0.00002190811,0.00015759656,0.00030386052,0.00019756627],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043065636,0.00031122068,0.12402132,0.000017670416,0.000058916758,0.00007027609,0.00013995214,0.0000059287036,0.87180907,0.0010790799,0.00016165743,0.0018942544],"study_design_scores_gemma":[0.0026720588,0.00015253547,0.9520905,0.000021026864,0.00016502973,0.000107184205,0.00020237202,0.000017419896,0.02233039,0.00074328535,0.021104798,0.00039339517],"about_ca_topic_score_codex":0.000022502327,"about_ca_topic_score_gemma":0.00002849277,"teacher_disagreement_score":0.84947866,"about_ca_system_score_codex":0.00007797724,"about_ca_system_score_gemma":0.000013876351,"threshold_uncertainty_score":0.80708313},"labels":[],"label_agreement":null},{"id":"W2109725003","doi":"10.1128/aem.71.12.8773-8783.2005","title":"<i>Desulfotomaculum</i> and <i>Methanobacterium</i> spp. Dominate a 4- to 5-Kilometer-Deep Fault","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":175,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; University of Toronto","funders":"NASA Astrobiology Institute; National Aeronautics and Space Administration; National Science Foundation","keywords":"Methanobacterium; Methanogenesis; Abiogenic petroleum origin; Microbial population biology; Geology; Microbial ecology; Geochemistry; Environmental chemistry; Ecology; Methane; Chemistry; Biology; Paleontology","score_opus":0.003299227935766716,"score_gpt":0.17606103564585218,"score_spread":0.17276180771008548,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109725003","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.992408,0.0002758376,0.00011422497,0.0004813897,0.00007420297,0.00042365823,0.000048021713,0.000036390462,0.0061382786],"genre_scores_gemma":[0.99228,0.00045882718,0.0034741405,0.0027297738,0.000060616796,0.00005187775,0.00007553842,0.000030951618,0.0008382527],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99838126,0.000051189534,0.0002925709,0.00069403776,0.00006546909,0.00051548245],"domain_scores_gemma":[0.9993728,0.00004652245,0.00007660991,0.00023387237,6.899552e-7,0.00026953913],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00019887352,0.00031646076,0.00031397192,0.000047583657,0.00016178632,0.000027011718,0.00016815802,0.0001898299,0.0015980566],"category_scores_gemma":[0.0000025886845,0.00026651568,0.00004187268,0.0001034482,0.0004507682,0.000081051694,0.00055340456,0.00020273885,0.0016308859],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005032634,0.00008474661,0.001621267,0.0000050507565,0.000024541176,0.000003894882,0.00047157815,0.0001374729,0.9668217,0.000030108013,0.00040726978,0.03034209],"study_design_scores_gemma":[0.004311069,0.00076290476,0.023779165,0.00002144388,0.00016311133,0.00075243524,0.0008200553,0.0003952099,0.2520821,0.0007868215,0.714109,0.002016677],"about_ca_topic_score_codex":0.000029407745,"about_ca_topic_score_gemma":0.000016254422,"teacher_disagreement_score":0.71473956,"about_ca_system_score_codex":0.00009071409,"about_ca_system_score_gemma":0.0000016634194,"threshold_uncertainty_score":0.9999787},"labels":[],"label_agreement":null},{"id":"W2110396085","doi":"10.1128/aem.69.1.122-129.2003","title":"High pH during Trisodium Phosphate Treatment Causes Membrane Damage and Destruction of<i>Salmonella enterica</i>Serovar Enteritidis","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":81,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Viability assay; Chemistry; Gel electrophoresis; Salmonella enterica; Agarose gel electrophoresis; Sodium dodecyl sulfate; Microbiology; Biochemistry; Chromatography; Biology; Cell; Escherichia coli; DNA","score_opus":0.003974544062270834,"score_gpt":0.17242191000751955,"score_spread":0.16844736594524873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110396085","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989728,0.00015883356,0.000017571283,0.000031043823,0.00013403145,0.00024071123,0.000121880475,0.000017356484,0.00030578198],"genre_scores_gemma":[0.99668926,0.002000034,0.00080219394,0.00007823584,0.00001578682,0.000025753692,0.00008351964,0.000020330943,0.00028487915],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99897015,0.000042519674,0.0002615209,0.00042170906,0.000028897675,0.00027522526],"domain_scores_gemma":[0.99961555,0.000020360016,0.00011436443,0.00016427069,7.5078924e-7,0.000084686],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00004096195,0.00024014746,0.00028121247,0.00003080191,0.00015803121,0.000015582054,0.000061993676,0.000095919364,0.0011178021],"category_scores_gemma":[0.0000012104196,0.00021812897,0.00004851282,0.000044549368,0.00045103775,0.00009073759,0.000113069116,0.00007816163,0.0000555968],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000064247804,0.00015721894,0.0041198875,0.00001089375,0.000038802176,0.000005353485,0.0001833825,0.000012855328,0.99419713,0.000028089746,0.000016896165,0.0011652571],"study_design_scores_gemma":[0.001260501,0.0001790409,0.065975085,0.000008290267,0.000054120905,0.00032296716,0.00030467403,0.0000013616832,0.92526233,0.000026310769,0.0063863606,0.00021896289],"about_ca_topic_score_codex":0.00029113487,"about_ca_topic_score_gemma":0.000027204374,"teacher_disagreement_score":0.06893479,"about_ca_system_score_codex":0.000117151736,"about_ca_system_score_gemma":0.0000021934763,"threshold_uncertainty_score":0.9997953},"labels":[],"label_agreement":null},{"id":"W2110516956","doi":"10.1128/aem.71.11.7414-7425.2005","title":"Identification and Molecular Characterization of the Chromosomal Exopolysaccharide Biosynthesis Gene Cluster from <i>Lactococcus lactis</i> subsp. <i>cremoris</i> SMQ-461","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Lactococcus lactis; Gene cluster; Biology; Gene; Lactococcus; Genetics; Glycosyltransferase; Biochemistry; Bacteria; Lactic acid","score_opus":0.0024759125737278675,"score_gpt":0.15713183215359447,"score_spread":0.1546559195798666,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110516956","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99805325,0.0008282079,0.00013775847,0.00022627637,0.00006852143,0.00026808408,0.0003797586,0.0000022389834,0.000035894507],"genre_scores_gemma":[0.9977516,0.0009970627,0.00016082163,0.00063537393,0.000117650256,0.000024689807,0.0002610307,0.000017525961,0.000034243436],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991965,0.000043357093,0.00022001797,0.00035374923,0.000031348696,0.00015498897],"domain_scores_gemma":[0.9995681,0.000013027852,0.0001385338,0.00024178192,0.0000040283694,0.00003452297],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000064534244,0.0001619742,0.00015971927,0.000016035307,0.00010581436,0.000010575412,0.00011582721,0.0001386097,0.00001113035],"category_scores_gemma":[0.000003112918,0.00013440823,0.00004409845,0.000022706452,0.0002566549,0.0000017945414,0.00022295919,0.0000595769,0.0000039313577],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033049222,0.00003878498,0.003893181,0.0000043531245,0.00006104403,1.4584381e-7,0.00007660216,0.000003704585,0.993312,0.000010034237,0.000022271655,0.0025448003],"study_design_scores_gemma":[0.00036603532,0.000027839551,0.042040642,0.0000024261121,0.000045171626,0.000013434615,0.000050955794,0.000007319643,0.951477,0.000024059062,0.0058060884,0.00013900883],"about_ca_topic_score_codex":0.00001318945,"about_ca_topic_score_gemma":0.000008903981,"teacher_disagreement_score":0.04183501,"about_ca_system_score_codex":0.000011614326,"about_ca_system_score_gemma":0.0000069478406,"threshold_uncertainty_score":0.5481008},"labels":[],"label_agreement":null},{"id":"W2110553304","doi":"10.1128/aem.01567-07","title":"Fitness Variation of <i>Borrelia burgdorferi</i> Sensu Stricto Strains in Mice","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":99,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Public Health Agency of Canada","funders":"National Institutes of Health; Wellcome Trust; National Institute of Arthritis and Musculoskeletal and Skin Diseases; U.S. Department of Agriculture","keywords":"Borrelia burgdorferi; Biology; Transmission (telecommunications); Sensu stricto; Lyme disease; Borrelia; Microbiology; Strain (injury); Virology; Vertebrate; Zoology; Genetics; Gene; Anatomy; Antibody","score_opus":0.004156471038666359,"score_gpt":0.1863743686033741,"score_spread":0.18221789756470774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110553304","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99736464,0.00084651477,0.00029860582,0.00002074969,0.00022849675,0.00026593936,0.00022550918,0.000028155424,0.0007213655],"genre_scores_gemma":[0.99897957,0.0001387762,0.00006669583,0.00016412338,0.000020403642,0.000010771797,0.00052739383,0.000016586477,0.00007565834],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988182,0.00005625107,0.00037953252,0.00035543024,0.000014231006,0.0003763229],"domain_scores_gemma":[0.99956,0.00012003851,0.00013770521,0.00015066452,0.000003998748,0.000027591645],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020017523,0.00020026126,0.0003016906,0.00013255955,0.00006459776,0.000003254024,0.00010294497,0.0003213772,0.00023960994],"category_scores_gemma":[0.000008327621,0.00020006174,0.00004539562,0.000097158525,0.0003833132,0.000033101376,0.00009486972,0.00019828838,0.00008045945],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010504624,0.00028083342,0.016138162,0.000013290298,0.00006383222,0.0000046848168,0.00028337032,0.000020861746,0.9800658,0.00059,0.00007114162,0.0023629398],"study_design_scores_gemma":[0.0027291009,0.00020785749,0.6660456,0.000012043523,0.000059702565,0.0001763901,0.00077022554,0.0000014114798,0.32563677,0.00018364677,0.003825734,0.00035151816],"about_ca_topic_score_codex":0.00017940997,"about_ca_topic_score_gemma":0.00006510634,"teacher_disagreement_score":0.6544291,"about_ca_system_score_codex":0.000074038995,"about_ca_system_score_gemma":0.000014949831,"threshold_uncertainty_score":0.8158281},"labels":[],"label_agreement":null},{"id":"W2110925827","doi":"10.1128/aem.71.7.3858-3865.2005","title":"Characterization of Citrate Synthase from <i>Geobacter sulfurreducens</i> and Evidence for a Family of Citrate Synthases Similar to Those of Eukaryotes throughout the <i>Geobacteraceae</i>","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Citrate synthase; ATP citrate lyase; Biochemistry; Enzyme; Geobacter sulfurreducens; ATP synthase; Biology; Enzyme kinetics; Cofactor; Citric acid cycle; Chemistry; Bacteria; Active site; Genetics","score_opus":0.016412359196594915,"score_gpt":0.2350886324424143,"score_spread":0.21867627324581937,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110925827","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99711573,0.0003482123,0.00022220857,0.000272694,0.00005450596,0.00065904466,0.0012917281,0.0000062105696,0.000029669418],"genre_scores_gemma":[0.9966706,0.0012288473,0.0010766131,0.000618174,0.00004870562,0.000026551948,0.00029977225,0.000014955102,0.00001577228],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99883527,0.000047328507,0.00044037792,0.00038931487,0.00006551803,0.00022219255],"domain_scores_gemma":[0.99920213,0.00023207978,0.00029296026,0.0002078893,0.0000045432143,0.000060421175],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018836198,0.0002071667,0.00032983767,0.000026819085,0.00007142832,0.000010110352,0.00016261589,0.00011197761,0.0001260671],"category_scores_gemma":[0.000012590892,0.00015466871,0.000057243225,0.00007614035,0.00052666507,0.00012956787,0.00018032183,0.000061268314,0.000008456273],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017386448,0.00011422379,0.010217361,0.00003572066,0.000020686432,1.5423049e-7,0.000572344,0.000028731723,0.9849225,0.000010971037,0.00007451861,0.0038288839],"study_design_scores_gemma":[0.00042412107,0.00013663872,0.058708668,0.000053415275,0.00006582606,0.0000033266901,0.00017196102,0.000032328113,0.93763685,0.000035591653,0.0025605508,0.00017068937],"about_ca_topic_score_codex":0.00014759108,"about_ca_topic_score_gemma":0.000044524993,"teacher_disagreement_score":0.04849131,"about_ca_system_score_codex":0.00002876632,"about_ca_system_score_gemma":0.000007201588,"threshold_uncertainty_score":0.6307207},"labels":[],"label_agreement":null},{"id":"W2111185207","doi":"10.1128/aem.01351-12","title":"Roles of Host Species, Geographic Separation, and Isolation in the Seroprevalence of Jamestown Canyon and Snowshoe Hare Viruses in Newfoundland","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Viral Infections and Vectors","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; Government of Newfoundland and Labrador; Memorial University of Newfoundland","funders":"Public Health Agency of Canada; Department of Natural Resources, Government of Newfoundland and Labrador","keywords":"Seroprevalence; Snowshoe hare; Biology; Host (biology); Geography; Outbreak; Ecology; Zoology; Habitat; Virology; Serology","score_opus":0.011092848383809428,"score_gpt":0.23462832606901815,"score_spread":0.22353547768520873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111185207","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99807405,0.0015184765,0.0000068619674,0.000047822352,0.000012918977,0.00018329878,0.000029652532,0.0000016804771,0.00012524622],"genre_scores_gemma":[0.9986083,0.0011823802,0.000035487847,0.00009866098,0.000014657384,0.000007585371,0.00003963349,0.0000033291383,0.000009984089],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996234,0.00002348549,0.00014287137,0.000098097415,0.000018251867,0.000093902825],"domain_scores_gemma":[0.999842,0.000029048433,0.00004724176,0.00006124404,0.000001354616,0.00001910747],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008979299,0.00007012863,0.00014146884,0.00006705166,0.000026638847,0.0000025382558,0.000016707261,0.00006159693,0.000024486631],"category_scores_gemma":[0.0000020429388,0.00005007715,0.0000099242925,0.00005104608,0.00024128784,0.00003980594,0.000024062067,0.00006734054,5.149657e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021451076,0.000048098398,0.5838439,0.000016607659,0.0000045198185,1.237969e-7,0.0005010381,0.0000015458282,0.415292,0.0000699202,0.0000055691785,0.00019525742],"study_design_scores_gemma":[0.0005327624,0.00012022942,0.9941822,0.000018647765,0.000018878902,0.00004698605,0.00077278144,0.000011063638,0.0033214255,0.000012661055,0.00091362896,0.00004871191],"about_ca_topic_score_codex":0.00030739908,"about_ca_topic_score_gemma":0.00077058957,"teacher_disagreement_score":0.41197056,"about_ca_system_score_codex":0.000014146756,"about_ca_system_score_gemma":0.0000030258102,"threshold_uncertainty_score":0.20420869},"labels":[],"label_agreement":null},{"id":"W2111303612","doi":"10.1128/aem.66.8.3134-3141.2000","title":"Characterization of<i>S</i>-Triazine Herbicide Metabolism by a<i>Nocardioides</i>sp. Isolated from Agricultural Soils","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pesticide and Herbicide Environmental Studies","field":"Environmental Science","cited_by":215,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Atrazine; Biology; Pseudomonas; Bacteria; Microbiology; Hydrolysis; Chemistry; Biochemistry; Chromatography; Pesticide","score_opus":0.002651382033468897,"score_gpt":0.15389622361978028,"score_spread":0.15124484158631138,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111303612","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955393,0.0006929409,0.00005567689,0.000113971386,0.000058340214,0.00030290827,0.00061343197,0.000035502453,0.0025878977],"genre_scores_gemma":[0.99486494,0.001883832,0.00020233449,0.0006592037,0.000055681732,0.00003550922,0.001838614,0.0000255194,0.000434369],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984199,0.000056435154,0.0004276066,0.0005849403,0.00010611222,0.00040504377],"domain_scores_gemma":[0.99949056,0.000041293835,0.00013919547,0.00021453461,6.845114e-7,0.000113753566],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000075398544,0.00035072275,0.00049199583,0.000017493103,0.00017344489,0.000013592606,0.0001868292,0.00018634737,0.010093173],"category_scores_gemma":[0.0000014004712,0.000294357,0.00008566861,0.00008899105,0.00064067467,0.0001348127,0.00021910174,0.00016244022,0.0007402595],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006827846,0.00011789403,0.008265255,0.0000022299475,0.00007642767,0.0000018910017,0.00018957845,0.000032188695,0.9827756,0.0000053006897,0.0005970876,0.0078682285],"study_design_scores_gemma":[0.0011589287,0.00009019624,0.6497602,0.000008151071,0.00010594148,0.00003087585,0.00015834103,0.000013774291,0.30493176,0.00014816182,0.04309412,0.00049956667],"about_ca_topic_score_codex":0.00039693614,"about_ca_topic_score_gemma":0.0000136271065,"teacher_disagreement_score":0.67784387,"about_ca_system_score_codex":0.00008282907,"about_ca_system_score_gemma":0.0000015436831,"threshold_uncertainty_score":0.9999509},"labels":[],"label_agreement":null},{"id":"W2111327072","doi":"10.1128/aem.00390-11","title":"Quantitative Analysis of the Relative Transcript Levels of Four Chlorophenol Reductive Dehalogenase Genes in Desulfitobacterium hafniense PCP-1 Exposed to Chlorophenols","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"","keywords":"Pentachlorophenol; Dehalogenase; Chlorophenol; Chemistry; Downregulation and upregulation; Biology; Gene; Biochemistry; Molecular biology; Phenol; Environmental chemistry; Organic chemistry","score_opus":0.03339420898834772,"score_gpt":0.20246479016086863,"score_spread":0.1690705811725209,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111327072","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981688,0.000046649944,0.00015440749,0.000032881704,0.00006992859,0.00047812058,0.000654473,0.000005167329,0.0003895275],"genre_scores_gemma":[0.9979024,0.000040534393,0.0018234043,0.00014114338,0.0000042681067,0.0000125753195,0.00003065564,0.0000115728435,0.000033478776],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99866635,0.000102736594,0.00045210912,0.00043463713,0.00007556443,0.00026859617],"domain_scores_gemma":[0.9994072,0.000045911074,0.00022466564,0.00024540845,0.0000036619276,0.00007319855],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017201627,0.00021237778,0.00041412553,0.00011387893,0.000058171678,0.0000027306778,0.0002393317,0.00013313211,0.00090824097],"category_scores_gemma":[0.00001017873,0.00015737354,0.00011227287,0.00046106713,0.00080197974,0.000067868285,0.00018970888,0.000105343315,0.000035277655],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024248552,0.00016315663,0.021787494,0.0000038335315,0.00015709604,0.0000014764775,0.006577186,0.0000517156,0.9701139,0.00010675343,0.000007895574,0.000787058],"study_design_scores_gemma":[0.00038722836,0.00013677831,0.361437,0.000004989049,0.00010188806,0.0000030476983,0.0009571402,0.000008493922,0.6366752,0.000098331875,0.000045993555,0.00014393269],"about_ca_topic_score_codex":0.00016944972,"about_ca_topic_score_gemma":0.00029436284,"teacher_disagreement_score":0.3396495,"about_ca_system_score_codex":0.00011158985,"about_ca_system_score_gemma":0.000007866334,"threshold_uncertainty_score":0.99446017},"labels":[],"label_agreement":null},{"id":"W2111470663","doi":"10.1128/aem.66.12.5282-5289.2000","title":"Composition of Soil Microbial Communities Enriched on a Mixture of Aromatic Hydrocarbons","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Nova Chemicals (Canada); University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Benzene; Naphthalene; Rhodococcus; Toluene; Environmental chemistry; Bioremediation; Chemistry; Biodegradation; Styrene; Microbial biodegradation; Bacteria; Microorganism; Organic chemistry; Biology","score_opus":0.004265413245671724,"score_gpt":0.16716536157691617,"score_spread":0.16289994833124444,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111470663","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99622065,0.00002860321,0.0000037351222,0.000052521093,0.000026962629,0.00017536539,0.00011110087,0.000010535583,0.0033705002],"genre_scores_gemma":[0.99888444,0.00015376144,0.00017842701,0.00037571328,0.0000094628795,0.0000033037422,0.0002995378,0.000009623148,0.00008570738],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992653,0.000055222117,0.0002817493,0.00017084052,0.000051697232,0.00017517862],"domain_scores_gemma":[0.99962795,0.000042439195,0.00011495189,0.00017067563,2.809229e-7,0.00004368382],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000074814445,0.00016019102,0.00024643357,0.000029675022,0.000065221044,0.000003467756,0.00013684275,0.00013244044,0.0019442808],"category_scores_gemma":[5.3819406e-7,0.00014096957,0.00004684412,0.000054657365,0.00069565687,0.000024702156,0.00007067639,0.00010495654,0.00016679506],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008319651,0.0002294388,0.0023941253,0.000007315509,0.000017478988,4.1707875e-7,0.0006341349,0.00004480983,0.9941271,0.000016181413,0.00026064657,0.0021851833],"study_design_scores_gemma":[0.0017054052,0.00039042195,0.038609877,0.000027210557,0.00005101693,0.00005084139,0.00060197216,0.00006162644,0.955391,0.00028032693,0.0024430251,0.0003872935],"about_ca_topic_score_codex":0.00011064321,"about_ca_topic_score_gemma":0.000033623815,"teacher_disagreement_score":0.03873609,"about_ca_system_score_codex":0.00003910565,"about_ca_system_score_gemma":0.0000025776635,"threshold_uncertainty_score":0.99896806},"labels":[],"label_agreement":null},{"id":"W2111602356","doi":"10.1128/aem.03939-13","title":"Bacterial Targets as Potential Indicators of Diesel Fuel Toxicity in Subantarctic Soils","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"National Institute of Food and Drug Safety Evaluation","keywords":"Species richness; Diesel fuel; Species evenness; Biology; Phylogenetic diversity; Microbial population biology; Soil water; Ecology; Environmental remediation; Ecosystem; Chemistry; Phylogenetics; Contamination; Bacteria","score_opus":0.002478378767627208,"score_gpt":0.1694864872500439,"score_spread":0.16700810848241668,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111602356","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973618,0.000039822382,0.000018600336,0.000059217517,0.0001181686,0.00018343673,0.000035729394,0.000009846145,0.002173383],"genre_scores_gemma":[0.9989594,0.000109279834,0.00013208661,0.00046568026,0.000028917406,0.000012348043,0.00024634486,0.00001191118,0.00003399724],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99878585,0.00019016827,0.00029143158,0.00034280852,0.000033118977,0.00035660292],"domain_scores_gemma":[0.999505,0.000083338346,0.0001221866,0.00022043107,4.6472405e-7,0.00006860307],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002338001,0.0001927132,0.00033895785,0.00006350795,0.00010403025,0.0000038023975,0.0002456352,0.0002508245,0.0046753194],"category_scores_gemma":[0.000008254456,0.00018632799,0.000044601507,0.00007091311,0.001100592,0.000047265123,0.0005201447,0.0002513491,0.00023272696],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013593098,0.00020415366,0.017046839,0.000011103822,0.000014702278,0.0000014857669,0.00035364323,0.000043236272,0.9804511,0.00017887377,0.00015108411,0.0014078285],"study_design_scores_gemma":[0.004065873,0.0011343191,0.730636,0.000013177277,0.00006365584,0.00014440656,0.00057875115,0.000049118928,0.22620118,0.009376178,0.026754484,0.0009828488],"about_ca_topic_score_codex":0.0002603952,"about_ca_topic_score_gemma":0.00032653054,"teacher_disagreement_score":0.75424993,"about_ca_system_score_codex":0.00006582778,"about_ca_system_score_gemma":0.000004956277,"threshold_uncertainty_score":0.99623454},"labels":[],"label_agreement":null},{"id":"W2111607587","doi":"10.1128/aem.71.8.4199-4202.2005","title":"Metabolism of the Aliphatic Nitramine 4-Nitro-2,4-Diazabutanal by <i>Methylobacterium</i> sp. Strain JS178","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Amino Acid Enzymes and Metabolism","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"Strategic Environmental Research and Development Program","keywords":"Strain (injury); Methylobacterium; Nitro; Metabolism; Chemistry; Bacteria; Stereochemistry; Microbiology; Organic chemistry; Biology; Biochemistry; Genetics; Gene","score_opus":0.0018250342244725756,"score_gpt":0.1594271001023307,"score_spread":0.1576020658778581,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111607587","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940357,0.004024106,0.00013039877,0.0001592695,0.00009785932,0.00020075335,0.000761347,0.0000053482086,0.0005852087],"genre_scores_gemma":[0.99601597,0.00078580563,0.000541081,0.0012589772,0.00018231985,0.000016734304,0.00061992294,0.000022009326,0.0005571578],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902534,0.00004040728,0.00025959557,0.00033670772,0.00004621522,0.00029171427],"domain_scores_gemma":[0.9995129,0.000009741832,0.00011943286,0.00028663225,0.000003154525,0.00006810601],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009810153,0.00021998181,0.0002552448,0.00001767444,0.00007400572,0.000006785753,0.00021169205,0.00018710825,0.00009917864],"category_scores_gemma":[0.000003136919,0.00016404218,0.000093500945,0.000035082445,0.00046179458,0.0000038655285,0.00020215452,0.0001052308,0.000009000882],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028866716,0.00008033655,0.00035632905,0.0000058278433,0.00006388018,1.5793978e-7,0.00004153701,0.0000070497867,0.9914334,0.00018215997,0.00095857936,0.006841914],"study_design_scores_gemma":[0.00075661263,0.000040447365,0.0048260028,0.000001862578,0.000056456465,0.000039488394,0.000106881205,0.0000025093213,0.74852294,0.000041807427,0.2454295,0.0001754704],"about_ca_topic_score_codex":0.000010520922,"about_ca_topic_score_gemma":0.0000066246557,"teacher_disagreement_score":0.24447092,"about_ca_system_score_codex":0.000010292943,"about_ca_system_score_gemma":0.000010407029,"threshold_uncertainty_score":0.6689446},"labels":[],"label_agreement":null},{"id":"W2111955707","doi":"10.1128/aem.70.7.4111-4117.2004","title":"CO <sub>2</sub> - and Anaerobiosis-Induced Changes in Physiology and Gene Expression of Different <i>Listeria monocytogenes</i> Strains","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Ottawa Mental Health Centre","funders":"","keywords":"Listeria monocytogenes; Strain (injury); Bacteria; Biology; Biochemistry; Fatty acid; Isocitrate lyase; Gene expression; Dehydrogenase; Microbiology; Fatty acid desaturase; Metabolism; Gene; Chemistry; Enzyme; Glyoxylate cycle; Polyunsaturated fatty acid; Genetics","score_opus":0.018320011408467236,"score_gpt":0.22915774001518038,"score_spread":0.21083772860671315,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111955707","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988522,0.0005324291,0.000021120562,0.000040887986,0.00005523096,0.0002846917,0.00018419146,0.000005507849,0.00002372693],"genre_scores_gemma":[0.9965337,0.0022970932,0.00020589092,0.00028646894,0.000048885737,0.000039618106,0.0005628658,0.000023806522,0.0000016731007],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988597,0.00004754217,0.00023327133,0.000562532,0.000025149951,0.00027180876],"domain_scores_gemma":[0.9995845,0.000008587981,0.00010624064,0.0002269307,0.0000021754242,0.00007156589],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006007349,0.00026303076,0.0003279807,0.000047495745,0.000059760026,0.000006149666,0.00009590147,0.00029547443,0.0000036151737],"category_scores_gemma":[0.0000017522883,0.00024051743,0.000026785425,0.000021772126,0.0004018563,0.0000038560374,0.00032818317,0.00007570516,8.50606e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016088,0.00009316704,0.0018296117,0.000031857173,0.000026065894,0.0000017541721,0.00012907079,0.000005399992,0.99659175,0.000026168345,0.0000031305478,0.0011011423],"study_design_scores_gemma":[0.0016732863,0.0003930548,0.02710806,0.000010669867,0.000014783245,0.00007444486,0.00016211772,3.4864814e-7,0.9701547,0.00007336845,0.00010460667,0.00023054467],"about_ca_topic_score_codex":0.0000070306905,"about_ca_topic_score_gemma":0.00004600228,"teacher_disagreement_score":0.026437037,"about_ca_system_score_codex":0.000026257769,"about_ca_system_score_gemma":0.000008335746,"threshold_uncertainty_score":0.9808016},"labels":[],"label_agreement":null},{"id":"W2112024541","doi":"10.1128/aem.68.11.5607-5619.2002","title":"Antibacterial Activities of Nisin Z Encapsulated in Liposomes or Produced In Situ by Mixed Culture during Cheddar Cheese Ripening","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":117,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Nisin; Lactococcus lactis; Bacteriocin; Lactobacillus casei; Food science; Cheese ripening; Lactococcus; Microbiology; Lysis; Chemistry; Bacteria; Ripening; Biology; Lactic acid; Biochemistry; Fermentation; Antimicrobial","score_opus":0.005861901201745203,"score_gpt":0.157478392735072,"score_spread":0.1516164915333268,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112024541","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99915713,0.00024045055,3.8033495e-8,0.00006599613,0.000041800653,0.00021493125,0.00010488057,0.000010834081,0.00016392162],"genre_scores_gemma":[0.9991225,0.00043758363,0.000024107061,0.00003016078,0.000031003776,0.000008767881,0.00023009568,0.0000017812054,0.00011397248],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999099,0.000035880134,0.0002391272,0.0003220516,0.000030185858,0.00027375127],"domain_scores_gemma":[0.99982494,0.00001706726,0.000079905025,0.000043073873,9.755547e-7,0.000034021177],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006235155,0.00016363732,0.00026499323,0.000020295422,0.00005614961,0.000011730723,0.000106405205,0.00017759313,0.0001916664],"category_scores_gemma":[0.000002421746,0.0000748446,0.00002640343,0.000103955696,0.00015115069,0.00005194491,0.000105544896,0.00013787541,0.000004223508],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010751611,0.00022454167,0.0040540793,0.000010155777,0.000010717944,0.000003412464,0.00039414733,7.772861e-7,0.99323136,0.000006221692,0.000021658849,0.0019354026],"study_design_scores_gemma":[0.0007491157,0.00017372334,0.081422344,0.00001747128,0.0000046993423,0.000017765993,0.00088449795,0.0000037194834,0.9161572,0.000012409755,0.00037906563,0.00017798426],"about_ca_topic_score_codex":0.000028222516,"about_ca_topic_score_gemma":0.00006305329,"teacher_disagreement_score":0.07736827,"about_ca_system_score_codex":0.00003155561,"about_ca_system_score_gemma":0.0000010486473,"threshold_uncertainty_score":0.3052074},"labels":[],"label_agreement":null},{"id":"W2112098552","doi":"10.1128/aem.02363-15","title":"Abundance of Antibiotic Resistance Genes in Bacteriophage following Soil Fertilization with Dairy Manure or Municipal Biosolids, and Evidence for Potential Transduction","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":126,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Bacteriophage; Resistome; Biosolids; Antibiotic resistance; Biology; Context (archaeology); Manure; Bacteria; Microbiology; Antibiotics; Soil microbiology; Agronomy; Biotechnology; Escherichia coli; Integron; Environmental science; Gene; Environmental engineering; Genetics","score_opus":0.019544828514455888,"score_gpt":0.23770878818363184,"score_spread":0.21816395966917596,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112098552","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99826926,0.00067606714,0.00045733343,0.00008171404,0.000090668465,0.00034428647,0.000037105212,0.000008869625,0.00003472063],"genre_scores_gemma":[0.9976691,0.00044647217,0.0015154957,0.00006258041,0.000018266393,0.000015907342,0.000059223323,0.000015128056,0.00019783912],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99915516,0.000028652721,0.00021652655,0.00035874214,0.000035156172,0.0002057425],"domain_scores_gemma":[0.9997058,0.000027312279,0.00008876764,0.00012169743,0.0000013720128,0.00005504183],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010526559,0.00015362493,0.00020768231,0.0000327164,0.00007955604,0.000014025902,0.00007713261,0.00009487731,0.00005271603],"category_scores_gemma":[0.0000028621528,0.00012650517,0.000028671659,0.00006420495,0.00032037284,0.0001830726,0.0000682145,0.00006979736,0.000004200593],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00068138074,0.00006646636,0.003378824,0.00003623986,0.0000139629,0.000004061107,0.0005716142,0.00015145796,0.99394834,0.0000037976386,0.000022469068,0.0011213772],"study_design_scores_gemma":[0.0068890965,0.0011459886,0.30680647,0.00044707776,0.00024016015,0.0002851689,0.0052921935,0.00035938527,0.6724643,0.00009380271,0.0049594445,0.0010168924],"about_ca_topic_score_codex":0.0001287195,"about_ca_topic_score_gemma":0.000893438,"teacher_disagreement_score":0.32148403,"about_ca_system_score_codex":0.000074695345,"about_ca_system_score_gemma":0.000006713673,"threshold_uncertainty_score":0.5158731},"labels":[],"label_agreement":null},{"id":"W2112175923","doi":"10.1128/aem.00659-11","title":"Amoeba Host Model for Evaluation of Streptococcus suis Virulence","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec; Fonds de Recherche du Québec - Santé","funders":"","keywords":"Streptococcus suis; Virulence; Amoeba (genus); Microbiology; Biology; Dictyostelium discoideum; Pathogen; Endocarditis; Virology; Genetics; Medicine; Gene","score_opus":0.04213269819440463,"score_gpt":0.26252610986972935,"score_spread":0.22039341167532472,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112175923","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99665964,0.00010920214,0.00057815074,0.000007251779,0.000024745406,0.00096090685,0.00012669482,0.0000093049275,0.0015241134],"genre_scores_gemma":[0.9983861,0.000044552955,0.00096487487,0.000050530947,0.000011156543,0.00027164767,0.0001757779,0.000009033292,0.00008635854],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994886,0.0000089522655,0.00014390795,0.00020467828,0.000029886947,0.00012399118],"domain_scores_gemma":[0.9997546,0.000015599913,0.000056837864,0.00012483969,0.0000071243935,0.00004101445],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000080560414,0.00009830138,0.00016088538,0.00004277946,0.000042373988,0.0000011137085,0.000023510642,0.00008149466,0.00023939017],"category_scores_gemma":[0.0000029536623,0.000081385486,0.00004319596,0.000022282642,0.00016399175,0.000016010394,0.000027120543,0.00003701378,0.000013407293],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000111785645,0.00041474597,0.077417836,0.000016644924,0.0001010305,3.1743983e-7,0.00024254582,0.0000146919465,0.9134134,0.00047056374,0.000034633926,0.007761795],"study_design_scores_gemma":[0.012291944,0.0012764737,0.38570222,0.000033964814,0.0011294864,0.00006306982,0.0005484864,0.009856779,0.58610463,0.0022407735,0.00038999316,0.0003621825],"about_ca_topic_score_codex":0.000016891587,"about_ca_topic_score_gemma":0.0000025571208,"teacher_disagreement_score":0.32730877,"about_ca_system_score_codex":0.000042295425,"about_ca_system_score_gemma":0.000012954146,"threshold_uncertainty_score":0.3318804},"labels":[],"label_agreement":null},{"id":"W2112200566","doi":"10.1128/aem.01512-08","title":"Fermentation of Barley by Using <i>Saccharomyces cerevisiae</i> : Examination of Barley as a Feedstock for Bioethanol Production and Value-Added Products","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Alberta Crop Industry Development Fund","keywords":"Fermentation; Food science; Chemistry; Ethanol fuel; Biofuel; Ethanol; Hydrolysis; Starch; Raw material; Gallic acid; Biotechnology; Biochemistry; Biology; Organic chemistry","score_opus":0.009977325489458124,"score_gpt":0.18542798399845906,"score_spread":0.17545065850900093,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112200566","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980856,0.0008742704,0.00010695779,0.00005904159,0.00012934065,0.0006161747,0.0000633077,0.000024010327,0.0000412934],"genre_scores_gemma":[0.9976177,0.0010883262,0.00093671965,0.000021296282,0.000043245964,0.000018750645,0.0002059098,0.000016012775,0.000052039406],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993186,0.000020205856,0.00021954639,0.000277042,0.000037566588,0.0001270637],"domain_scores_gemma":[0.9997753,0.00000815858,0.00008798834,0.00009444039,0.00000716715,0.000026971255],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000096892705,0.00013912954,0.00018686477,0.00006384462,0.000072835785,0.000003062237,0.00003781688,0.000110518,0.000014105661],"category_scores_gemma":[0.0000048761112,0.00013625088,0.000020123833,0.00005688076,0.00024667135,0.00007926473,0.000028300621,0.00005291087,0.0000017752895],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034224948,0.000049135142,0.00038973268,0.0002554307,0.000027507738,7.028981e-8,0.00037849683,0.000029647314,0.9959739,0.000013758629,0.00024836088,0.0025997504],"study_design_scores_gemma":[0.0004971463,0.00012485556,0.0019456046,0.000014941875,0.000033962726,0.000072310206,0.00044155284,0.00011837393,0.99573404,0.000019561554,0.00085651205,0.00014115473],"about_ca_topic_score_codex":0.00001157442,"about_ca_topic_score_gemma":1.843676e-7,"teacher_disagreement_score":0.0024585957,"about_ca_system_score_codex":0.000036017336,"about_ca_system_score_gemma":0.0000051652482,"threshold_uncertainty_score":0.55561495},"labels":[],"label_agreement":null},{"id":"W2112247605","doi":"10.1128/aem.68.11.5580-5584.2002","title":"Presence of a Single Genotype of the Newly Described Species <i>Mycobacterium immunogenum</i> in Industrial Metalworking Fluids Associated with Hypersensitivity Pneumonitis","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":102,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Genotype; Restriction fragment length polymorphism; Biology; Restriction enzyme; Pulsed-field gel electrophoresis; genomic DNA; Microbiology; Mycobacterium; Hypersensitivity pneumonitis; Typing; Genetics; DNA; Bacteria; Medicine; Gene","score_opus":0.0272914661070318,"score_gpt":0.18512708028131225,"score_spread":0.15783561417428044,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112247605","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99823624,0.00030574738,0.0000021831613,0.000109656045,0.00004428739,0.00035154854,0.00013211089,0.000005847512,0.00081240153],"genre_scores_gemma":[0.99942,0.00026422358,0.000051865918,0.00007431182,0.00002700076,0.00001177144,0.000063509266,0.000012409258,0.00007489497],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99910533,0.00009386094,0.00023589341,0.00021486368,0.00008180621,0.00026823493],"domain_scores_gemma":[0.9994862,0.00016053226,0.0001096507,0.00018669762,0.0000065734716,0.000050321272],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011569061,0.00013965942,0.000368936,0.00005359549,0.000042418804,0.000005507996,0.000077587414,0.00013992659,0.00010778736],"category_scores_gemma":[0.000041497042,0.000097905475,0.000051592655,0.00014301676,0.00057381997,0.00002922574,0.0001327235,0.00019323832,0.0000031114341],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019140924,0.00030164688,0.12065405,0.000011945897,0.000072339455,0.000009129835,0.00021411754,0.0000012965928,0.8775149,0.000010139452,0.00003571908,0.0009833182],"study_design_scores_gemma":[0.0027964076,0.0005549734,0.3309617,0.0001344737,0.000094804585,0.00010845958,0.00038206903,0.000007898469,0.6641778,0.000008160432,0.0006263087,0.00014693936],"about_ca_topic_score_codex":0.00007573251,"about_ca_topic_score_gemma":0.00003361384,"teacher_disagreement_score":0.21333711,"about_ca_system_score_codex":0.00007248776,"about_ca_system_score_gemma":0.000013642408,"threshold_uncertainty_score":0.39924696},"labels":[],"label_agreement":null},{"id":"W2112264688","doi":"10.1128/aem.67.4.1700-1709.2001","title":"Molecular Characterization of a Theta Replication Plasmid and Its Use for Development of a Two-Component Food-Grade Cloning System for <i>Lactococcus lactis</i>","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":70,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Novalait; Lallemand; Dairy Farmers of Canada","keywords":"Replicon; Plasmid; Biology; Lactococcus lactis; Genetics; Gene; Cloning (programming); Cloning vector; Vector (molecular biology); Recombinant DNA; Bacteria","score_opus":0.017619273671852727,"score_gpt":0.19675875726717215,"score_spread":0.17913948359531942,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112264688","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984313,0.000056360244,0.00031674936,0.00004765174,0.000019094901,0.00082761835,0.0002847716,0.0000085372385,0.0000078887015],"genre_scores_gemma":[0.998457,0.00004871649,0.00040865035,0.00003910908,0.000011699789,0.000105102314,0.0009236978,0.0000018686134,0.00000414196],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993511,0.000012075895,0.00022888895,0.00024999544,0.000021230766,0.00013675368],"domain_scores_gemma":[0.99971503,0.000046246172,0.00016019963,0.00004286637,0.0000054429925,0.000030205316],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008898017,0.000102088205,0.00017025402,0.000010624733,0.000082541366,0.0000075962253,0.000055943627,0.0000743943,0.0000017339758],"category_scores_gemma":[0.0000018191807,0.00005366037,0.00002929449,0.000028756645,0.000044989258,0.000029147528,0.000051061677,0.000026654412,2.6385848e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008285727,0.00007062004,0.00051331636,0.000031941036,0.000028917337,7.43139e-8,0.00006073617,0.0000018374569,0.99454975,0.0010561167,6.008669e-7,0.0036032214],"study_design_scores_gemma":[0.0005979365,0.0002628705,0.010914812,0.000018909466,0.000022476761,0.000016256798,0.00008964934,0.000108704575,0.98391163,0.00003417278,0.003906953,0.00011563789],"about_ca_topic_score_codex":0.000002509979,"about_ca_topic_score_gemma":0.000003035511,"teacher_disagreement_score":0.010638141,"about_ca_system_score_codex":0.000019399655,"about_ca_system_score_gemma":0.0000021853884,"threshold_uncertainty_score":0.21882063},"labels":[],"label_agreement":null},{"id":"W2112274063","doi":"10.1128/aem.00487-08","title":"Improved Inactivation of Nonenveloped Enteric Viruses and Their Surrogates by a Novel Alcohol-Based Hand Sanitizer","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":120,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Gojo Industries; North Carolina State University","keywords":"Hand sanitizer; Norovirus; Murine norovirus; Infectivity; Feline calicivirus; Virology; Rotavirus; Microbiology; Poliovirus; Virus quantification; Biology; Virus; Chemistry; Food science","score_opus":0.01996066088696391,"score_gpt":0.2299586941938983,"score_spread":0.2099980333069344,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112274063","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981507,0.0003342112,0.00075767667,0.00015922578,0.000016033006,0.00027657757,0.00023736576,0.000009835449,0.000058384918],"genre_scores_gemma":[0.99743116,0.00052224786,0.0005755284,0.000906676,0.00001690833,0.000029658757,0.00046961772,0.000014412984,0.000033780943],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99916697,0.00003186685,0.00023137263,0.00027737825,0.000023646478,0.0002687688],"domain_scores_gemma":[0.99967897,0.000043720083,0.00007893275,0.000100490186,0.000004368126,0.000093535025],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008036105,0.00016308838,0.00037109782,0.00005635439,0.00009011303,0.0000033264398,0.000040832496,0.00010866687,0.000054944594],"category_scores_gemma":[0.000013334442,0.00012612564,0.000034986395,0.000030444471,0.000977505,0.000027533157,0.00007310418,0.00012037457,0.0000032452085],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004954165,0.00018533641,0.029975753,0.000026150952,0.000050151386,0.0000017090885,0.00008720165,3.347001e-7,0.96812713,0.0000032741164,0.00020060512,0.00084691984],"study_design_scores_gemma":[0.0062280637,0.0011347559,0.08799858,0.000025771726,0.000021269445,0.000455813,0.00031558677,0.00011004402,0.9000181,0.000011407391,0.003509417,0.00017119596],"about_ca_topic_score_codex":0.000070073314,"about_ca_topic_score_gemma":0.000005232888,"teacher_disagreement_score":0.06810905,"about_ca_system_score_codex":0.000031453936,"about_ca_system_score_gemma":0.000012105586,"threshold_uncertainty_score":0.5143254},"labels":[],"label_agreement":null},{"id":"W2112294594","doi":"10.1128/aem.71.3.1364-1372.2005","title":"The Doubly Phosphorylated Form of HPr, HPr(Ser-P)(His∼P), Is Abundant in Exponentially Growing Cells of<i>Streptococcus thermophilus</i>and Phosphorylates the Lactose Transporter LacS as Efficiently as HPr(His∼P)","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies; Novalait; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation","keywords":"PEP group translocation; Streptococcus thermophilus; Biology; Phosphorylation; Phosphoenolpyruvate carboxykinase; Biochemistry; Lactose; Molecular biology; Enzyme; Lactobacillus","score_opus":0.0021904636504554236,"score_gpt":0.16894983349950868,"score_spread":0.16675936984905326,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112294594","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99563026,0.0030229143,0.000009787317,0.00044500828,0.00009805037,0.0005159381,0.00011035753,0.000007117942,0.00016054798],"genre_scores_gemma":[0.99433905,0.004757887,0.00006744958,0.00048044743,0.00004332243,0.00003114545,0.0001311341,0.000029373676,0.000120202756],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99849087,0.000037607886,0.00050316844,0.0004957055,0.00006310849,0.0004095475],"domain_scores_gemma":[0.9993093,0.000033965316,0.00021196295,0.00038049673,0.000007795397,0.000056497327],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021815258,0.00030461236,0.00032796373,0.00004002782,0.00014715114,0.000016115026,0.00032282682,0.00044428767,0.000066063476],"category_scores_gemma":[0.0000025418383,0.0002041957,0.00010316692,0.00006691083,0.000966104,0.000006287794,0.00023105461,0.00020301659,0.000010809049],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036665652,0.00013729738,0.00055184,0.000012001555,0.00009356612,0.0000017439972,0.00049005536,0.00002021422,0.9898189,0.00010669546,0.00004515567,0.008355873],"study_design_scores_gemma":[0.0012420702,0.00038444513,0.0032675997,0.00001087731,0.000041991618,0.000030526488,0.00039031348,0.000009798426,0.9665999,0.00012227123,0.027665948,0.00023426862],"about_ca_topic_score_codex":0.00008159178,"about_ca_topic_score_gemma":0.00006287572,"teacher_disagreement_score":0.027620792,"about_ca_system_score_codex":0.000018711073,"about_ca_system_score_gemma":0.000025342682,"threshold_uncertainty_score":0.83268595},"labels":[],"label_agreement":null},{"id":"W2112432272","doi":"10.1128/aem.02682-12","title":"Poly-γ- <scp>d</scp> -Glutamic Acid Capsule Interferes with Lytic Infection of Bacillus anthracis by B. anthracis-Specific Bacteriophages","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Université Laval","keywords":"Bacillus anthracis; Lytic cycle; Polyglutamic acid; Microbiology; Capsule; Biology; Bacteriophage; Virology; Chemistry; Bacteria; Escherichia coli; Biochemistry; Virus; Gene","score_opus":0.0045068653877503315,"score_gpt":0.18105697584448882,"score_spread":0.1765501104567385,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112432272","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955473,0.0018943575,0.0003471857,0.00002410834,0.0002023186,0.00026505906,0.00026647933,0.00003490835,0.0014182933],"genre_scores_gemma":[0.99709386,0.0015878734,0.0002906202,0.00013602806,0.000052408137,0.000028974498,0.00029204326,0.000038019003,0.0004802039],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99852055,0.00004938935,0.00033918675,0.000459629,0.000061502564,0.0005697458],"domain_scores_gemma":[0.9993215,0.000051136503,0.00020190843,0.0002675448,0.0000018619958,0.0001560255],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000098116,0.00034468633,0.00035636782,0.000059534843,0.0001929169,0.00002520312,0.00014877348,0.00019259554,0.0016870125],"category_scores_gemma":[0.0000033381912,0.0002941952,0.0000675154,0.000098975295,0.0009768568,0.00030175896,0.00027823975,0.00023215722,0.00044723888],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023550112,0.0002998874,0.008150772,0.000012330427,0.000045081368,0.0000013388063,0.000704487,0.0000022678266,0.9800395,0.00000839516,0.0015970814,0.009115332],"study_design_scores_gemma":[0.0006757844,0.000281787,0.12169385,0.000016624987,0.00004952647,0.00028506797,0.00059281406,0.0000032545684,0.79452413,0.0000058772157,0.081659146,0.00021216372],"about_ca_topic_score_codex":0.00021468446,"about_ca_topic_score_gemma":0.000029825651,"teacher_disagreement_score":0.18551537,"about_ca_system_score_codex":0.00016609102,"about_ca_system_score_gemma":0.0000034503032,"threshold_uncertainty_score":0.999951},"labels":[],"label_agreement":null},{"id":"W2112578960","doi":"10.1128/aem.72.4.2707-2720.2006","title":"Pseudomonad Cyclopentadecanone Monooxygenase Displaying an Uncommon Spectrum of Baeyer-Villiger Oxidations of Cyclic Ketones","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme Catalysis and Immobilization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Biotechnology Research Institute","funders":"","keywords":"Monooxygenase; Stereochemistry; Enzyme; Chemistry; Baeyer–Villiger oxidation; Oxidoreductase; Amino acid; Biochemistry; Cytochrome P450","score_opus":0.003247319796096145,"score_gpt":0.18597967253250502,"score_spread":0.1827323527364089,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112578960","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998183,0.0005232102,0.0004526155,0.000020309013,0.00002636794,0.00014742746,0.00015097608,0.000003634157,0.0004924436],"genre_scores_gemma":[0.99523073,0.00029626695,0.00026743225,0.000047772166,0.000043725337,0.000014005886,0.0039935345,0.000015954272,0.00009056384],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992062,0.00002799213,0.0002895135,0.0002936753,0.000029889929,0.00015272801],"domain_scores_gemma":[0.9995758,0.000008552952,0.00014166963,0.00023634966,0.0000033444894,0.000034290893],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000064607826,0.00014055875,0.0002003119,0.00004291221,0.000056423218,0.0000040702844,0.00009802475,0.000121733785,0.000035627076],"category_scores_gemma":[0.0000015060155,0.0001323495,0.000049590733,0.000045484805,0.00023300671,0.000006049706,0.0000953527,0.000040347844,0.000003175439],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003642502,0.00019879831,0.010394794,0.000010395828,0.000028279816,2.7413674e-7,0.000019599089,0.00017612564,0.9884678,0.0002960399,0.000071039,0.00030040633],"study_design_scores_gemma":[0.00040365217,0.00013628056,0.023752784,0.0000034739192,0.000028954835,0.000013470011,0.00014398471,0.000011083105,0.9734525,0.00008091677,0.0018321584,0.00014071587],"about_ca_topic_score_codex":0.000090540736,"about_ca_topic_score_gemma":0.00007523944,"teacher_disagreement_score":0.0150152985,"about_ca_system_score_codex":0.000010487508,"about_ca_system_score_gemma":0.000007579594,"threshold_uncertainty_score":0.5397056},"labels":[],"label_agreement":null},{"id":"W2113075000","doi":"10.1128/aem.70.5.2906-2911.2004","title":"Structural and Functional Differences in Two Cyclic Bacteriocins with the Same Sequences Produced by Lactobacilli","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":117,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics","keywords":"Bacteriocin; Lactobacillus gasseri; Efflux; Lactobacillus reuteri; Amino acid; Peptide; Biochemistry; Residue (chemistry); Chemistry; Circular dichroism; Biology; Colicin; Potassium; Peptide sequence; Alanine; Bacteria; Lactobacillus; Microbiology; Antimicrobial; Escherichia coli; Gene","score_opus":0.0077481702286353715,"score_gpt":0.16271428383703837,"score_spread":0.154966113608403,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113075000","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980754,0.00021502572,7.878155e-7,0.0013689296,0.000021471053,0.00017143282,0.000101671125,0.000008757836,0.000036490823],"genre_scores_gemma":[0.99925524,0.000117747324,0.000016260632,0.00038088017,0.000030112722,0.0000124816725,0.00016823136,8.707862e-7,0.000018171824],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99936974,0.000018584167,0.00009435168,0.00028711234,0.00003108871,0.00019914749],"domain_scores_gemma":[0.99986184,0.000028989165,0.00004017007,0.00003054437,0.0000010039832,0.000037443635],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004527778,0.00013406808,0.00012793031,0.000005653485,0.00016071029,0.000026355407,0.00007131356,0.00004956501,0.000051171126],"category_scores_gemma":[5.5797005e-7,0.000042804833,0.000011994291,0.000045039957,0.00041972354,0.000033829532,0.00006402297,0.000110867295,0.0000033182566],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027558575,0.000022070406,0.031899728,0.0000012066065,0.000009858903,5.817958e-7,0.000078440986,0.0000021022477,0.9657108,0.0001970269,0.000006674154,0.002043929],"study_design_scores_gemma":[0.00085246627,0.000374362,0.958018,0.000008434814,0.000013030255,0.000079048674,0.0011528606,0.0000026890154,0.037713464,0.00058157946,0.00092141895,0.00028263874],"about_ca_topic_score_codex":0.00013599927,"about_ca_topic_score_gemma":0.00035690947,"teacher_disagreement_score":0.92799735,"about_ca_system_score_codex":0.000022686028,"about_ca_system_score_gemma":0.0000024573392,"threshold_uncertainty_score":0.17455305},"labels":[],"label_agreement":null},{"id":"W21131524","doi":"10.1128/aem.01111-10","title":"Universitätsbibliothek Wien : Fachbereichsbibliothek Anglistik und Amerikanistik : Catalogues","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Historical, Literary, and Cultural Studies","field":"Arts and Humanities","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Philosophy","score_opus":0.006466125406251568,"score_gpt":0.1606934832636095,"score_spread":0.15422735785735792,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W21131524","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7998951,0.008653089,0.00003665684,0.00023943419,0.00041670245,0.00030904295,0.0013460636,0.0001446379,0.18895926],"genre_scores_gemma":[0.9882923,0.0003532932,0.00006800863,0.00033559898,0.00029817605,0.000009527891,0.0013057761,0.00001598888,0.0093213245],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991887,0.000018663857,0.00016228075,0.0003158214,0.000037714104,0.00027680057],"domain_scores_gemma":[0.9997442,0.000032173666,0.00006269445,0.000110687644,0.0000037628427,0.000046475012],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000028397099,0.00021621602,0.0002302531,0.0001499766,0.00052481424,0.000064806656,0.00011772355,0.000059811846,0.0006831516],"category_scores_gemma":[6.631178e-7,0.00016883832,0.00004971598,0.00006532887,0.0010365727,0.0001484775,0.00009860015,0.00009270306,0.00026147085],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001667505,0.00069776806,0.0039547575,0.000083249164,0.00045195103,0.00006062364,0.0362319,0.000008461929,0.32980558,0.4646882,0.15604623,0.00780452],"study_design_scores_gemma":[0.00033143064,0.00007129662,0.0010377716,0.0000031978084,0.000046846264,0.000012463702,0.0036059318,6.0366966e-7,0.00026122725,0.0013256499,0.99304074,0.00026285616],"about_ca_topic_score_codex":0.0006054757,"about_ca_topic_score_gemma":0.00040399152,"teacher_disagreement_score":0.8369945,"about_ca_system_score_codex":0.00006822685,"about_ca_system_score_gemma":0.0000039005677,"threshold_uncertainty_score":0.74800307},"labels":[],"label_agreement":null},{"id":"W2113210882","doi":"10.1128/aem.02590-06","title":"Alteration of Soil Rhizosphere Communities following Genetic Transformation of White Spruce","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bioenergy crop production and management","field":"Agricultural and Biological Sciences","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Natural Resources Canada; Université de Moncton","funders":"","keywords":"Rhizosphere; Transformation (genetics); White (mutation); Soil microbiology; Biology; Botany; Soil water; Ecology; Bacteria; Genetics; Gene","score_opus":0.005659754170281752,"score_gpt":0.16149535823982764,"score_spread":0.15583560406954589,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113210882","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99884504,0.0001345544,0.00017768948,0.00008314509,0.00004723916,0.00009340394,0.000015157566,0.000007126468,0.000596672],"genre_scores_gemma":[0.9993365,0.00012863438,0.00019647373,0.00008932532,0.000019337464,0.000002519579,0.00018554892,5.8584124e-7,0.000041099218],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996018,0.000015108529,0.00018340893,0.00007937482,0.000025014135,0.000095320465],"domain_scores_gemma":[0.9998718,0.000014556354,0.00006430662,0.000031225805,0.0000016979358,0.000016439133],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010376965,0.00006517348,0.00010033541,0.0000073595484,0.000094595,0.0000026834568,0.000052611264,0.000051828414,0.00010441969],"category_scores_gemma":[2.4537957e-7,0.000032126267,0.000031589283,0.00003329164,0.000103528786,0.000027167087,0.000041683135,0.00003402637,0.0000018951635],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017216236,0.000038426413,0.0019177545,0.0000073300275,0.000012557447,1.0669493e-7,0.0005841126,0.000031641594,0.9636399,0.00026523974,0.000010680031,0.033475026],"study_design_scores_gemma":[0.0006155873,0.000385724,0.20592351,0.000016141914,0.000044697812,0.000016019536,0.018798403,0.000036468395,0.7573174,0.00022544472,0.016356569,0.00026398103],"about_ca_topic_score_codex":0.000109835506,"about_ca_topic_score_gemma":0.00025614977,"teacher_disagreement_score":0.20632246,"about_ca_system_score_codex":0.00000788354,"about_ca_system_score_gemma":5.589461e-7,"threshold_uncertainty_score":0.1310071},"labels":[],"label_agreement":null},{"id":"W2113320648","doi":"10.1128/aem.69.8.4575-4582.2003","title":"Engineering <i>Deinococcus geothermalis</i> for Bioremediation of High-Temperature Radioactive Waste Environments","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Radioactive element chemistry and processing","field":"Chemistry","cited_by":171,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Biological and Environmental Research; Atomic Energy of Canada Limited","keywords":"Deinococcus radiodurans; Bioremediation; Mesophile; Thermophile; Deinococcus; Radioactive waste; Nitrilotriacetic acid; Chemistry; Bacteria; Waste management; Radiochemistry; Nuclear chemistry; Biology; DNA; Biochemistry; Inorganic chemistry","score_opus":0.0026402196323877594,"score_gpt":0.15756219612610492,"score_spread":0.15492197649371717,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113320648","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99854964,0.00030583038,0.0002235138,0.000010190671,0.000044913722,0.00012306705,0.0002768555,0.000010895515,0.0004551014],"genre_scores_gemma":[0.9981872,0.00012253705,0.0007996454,0.00004088396,0.00006836581,0.000055958153,0.0005314848,0.000023992581,0.00016993107],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992046,0.0000075486646,0.00020076182,0.00031863272,0.00003532197,0.00023313149],"domain_scores_gemma":[0.9996367,0.00006261218,0.00012293688,0.00012762679,0.0000013557133,0.00004874908],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006581319,0.00019626813,0.00021903915,0.000020433554,0.00007437348,0.00000705378,0.00007240644,0.00018083918,0.00021886325],"category_scores_gemma":[0.0000052358946,0.00019562087,0.000042210006,0.000022172355,0.00012523506,0.00004578336,0.000021502614,0.00011743039,0.0000025967972],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000045400688,0.00006550957,0.00033790304,0.0000865624,0.00007608542,4.755734e-7,0.000105866566,0.00018303163,0.9983204,0.00019419887,0.000024975187,0.00055957853],"study_design_scores_gemma":[0.0010738092,0.00001772548,0.00005213307,0.000010173178,0.000037645656,0.000014864818,0.00030034687,0.000012345741,0.99041086,0.00006082059,0.007815833,0.00019341781],"about_ca_topic_score_codex":0.0000013972955,"about_ca_topic_score_gemma":9.2246836e-8,"teacher_disagreement_score":0.007909528,"about_ca_system_score_codex":0.00006258389,"about_ca_system_score_gemma":0.000006265861,"threshold_uncertainty_score":0.79771876},"labels":[],"label_agreement":null},{"id":"W2113368053","doi":"10.1128/aem.02879-07","title":"Community-Level Assessment of the Effects of the Broad-Spectrum Antimicrobial Chlorhexidine on the Outcome of River Microbial Biofilm Development","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Agriculture and Agri-Food Canada; Environment and Climate Change Canada","funders":"Health Canada","keywords":"Chlorhexidine; Biology; Microbial population biology; Biomass (ecology); Biofilm; Cyanobacteria; Microbiology; Liter; Food science; Bacteria; Ecology; Medicine; Dentistry","score_opus":0.023903602184786175,"score_gpt":0.23500778333089734,"score_spread":0.21110418114611115,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113368053","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99819607,0.00002446021,0.000016767717,0.0003994969,0.00018043241,0.0006140718,0.00009631745,0.0000056891035,0.0004667075],"genre_scores_gemma":[0.9982865,0.00012325511,0.00024189746,0.0010550357,0.000012256249,0.0000062993663,0.000017621745,0.000017886363,0.00023926784],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984961,0.00022128882,0.00049631187,0.0002701845,0.00015936545,0.00035674789],"domain_scores_gemma":[0.998896,0.00023243391,0.00031779095,0.00048922433,9.725386e-7,0.000063597945],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0002171556,0.00029093295,0.00037303995,0.000022521905,0.00046084687,0.0000032885662,0.00067738956,0.00012874449,0.00018809916],"category_scores_gemma":[0.000012563654,0.00015201859,0.0001401721,0.000102612314,0.003942931,0.00003260985,0.001303388,0.00045512134,0.00002442511],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026207415,0.00062542834,0.100462765,0.000048891307,0.00005230329,8.930192e-7,0.000710653,0.000045190834,0.8974391,0.00006776825,0.00028731063,0.00023347433],"study_design_scores_gemma":[0.00055038935,0.000069862974,0.41545627,0.000028220034,0.000027018768,0.000026928526,0.0000538098,0.0000031640905,0.5829945,0.000020438765,0.00065919367,0.00011022044],"about_ca_topic_score_codex":0.00012352141,"about_ca_topic_score_gemma":0.00001847018,"teacher_disagreement_score":0.3149935,"about_ca_system_score_codex":0.00013347235,"about_ca_system_score_gemma":0.0000123948275,"threshold_uncertainty_score":0.9987678},"labels":[],"label_agreement":null},{"id":"W2113449951","doi":"10.1128/aem.70.2.745-751.2004","title":"Stable Carbon Isotope Ratios of Lipid Biomarkers of Sulfate-Reducing Bacteria","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":147,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; National Aeronautics and Space Administration","keywords":"Bacteria; Isotopes of carbon; Sulfate; Isotope; Sulfate-reducing bacteria; Chemistry; Carbon fibers; Environmental chemistry; Stable isotope ratio; Biology; Materials science; Organic chemistry; Total organic carbon","score_opus":0.004273478766982823,"score_gpt":0.16789391312166407,"score_spread":0.16362043435468124,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113449951","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950473,0.00013388372,0.000020481055,0.000035051242,0.00008102123,0.00022876513,0.000040345676,0.0000074954564,0.004405693],"genre_scores_gemma":[0.99866,0.00020157314,0.0009110559,0.00003797959,0.000013205702,0.000008566302,0.00007614503,0.000014085384,0.000077338365],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990688,0.000027110347,0.00031470932,0.0003024372,0.000045167668,0.00024177883],"domain_scores_gemma":[0.9995892,0.000019787307,0.00015536688,0.00017370787,6.7366653e-7,0.00006124573],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00012613714,0.00015998741,0.00026260215,0.000031758413,0.0000477031,0.00000319773,0.00011414801,0.00012796318,0.0009329294],"category_scores_gemma":[0.0000014709399,0.0001360492,0.00003629668,0.00007525804,0.0005407582,0.00003459445,0.00018214333,0.000085212996,0.00002881809],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004678102,0.00009954527,0.0042728693,0.000013914282,0.000043547927,7.368081e-7,0.00036226434,0.0010152158,0.9933503,0.00006453788,0.000015232313,0.0007150496],"study_design_scores_gemma":[0.0012642788,0.00019203543,0.0101632625,0.00001562447,0.000034692777,0.000023934868,0.00039758597,0.000025479852,0.98589766,0.00029623744,0.0014518994,0.00023729069],"about_ca_topic_score_codex":0.00040610434,"about_ca_topic_score_gemma":0.000006797656,"teacher_disagreement_score":0.007452628,"about_ca_system_score_codex":0.000069319336,"about_ca_system_score_gemma":0.0000056323565,"threshold_uncertainty_score":0.99998033},"labels":[],"label_agreement":null},{"id":"W2113548344","doi":"10.1128/aem.02505-07","title":"Associations between Antimicrobial Resistance Genes in Fecal Generic <i>Escherichia coli</i> Isolates from Cow-Calf Herds in Western Canada","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph; Université de Montréal; University of Saskatchewan; Public Health Agency of Canada","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Biology; Streptomycin; Tetracycline; Microbiology; Trimethoprim; Antibiotic resistance; Amikacin; Escherichia coli; Herd; Chloramphenicol; Genetics; Antimicrobial; Gene; Antibiotics; Animal science","score_opus":0.013112514262614876,"score_gpt":0.2048927946726278,"score_spread":0.19178028041001294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113548344","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997892,0.00024680176,0.000016615793,0.00032949325,0.00006610291,0.00024478015,0.00069026987,0.000013083003,0.00050083373],"genre_scores_gemma":[0.99697226,0.00056262664,0.00031922557,0.0013657212,0.000045989866,0.000006998996,0.0005078782,0.000024067604,0.00019525728],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998257,0.00008493307,0.00041620058,0.0005730919,0.000088753135,0.00058001385],"domain_scores_gemma":[0.99948007,0.000095465046,0.00010000348,0.0001566632,3.637441e-7,0.00016744917],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000093314775,0.00029181677,0.00042028466,0.000027873031,0.00015406578,0.000010616635,0.00020351178,0.00018367408,0.00023428089],"category_scores_gemma":[0.0000030757035,0.00029127253,0.000034136363,0.00012977528,0.0005730594,0.00008979239,0.00030264692,0.0002850444,0.00010395852],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014948199,0.00008864938,0.48728102,0.0000018245629,0.000009254963,0.000019792613,0.00007077896,0.00005319783,0.5119895,8.696206e-7,0.00028245483,0.00018775083],"study_design_scores_gemma":[0.001043881,0.000020220106,0.94386774,0.000009607967,0.000014575558,0.000008511082,0.000045061668,0.00001701703,0.047498245,0.000030107503,0.007084244,0.00036078144],"about_ca_topic_score_codex":0.054756038,"about_ca_topic_score_gemma":0.14501207,"teacher_disagreement_score":0.46449122,"about_ca_system_score_codex":0.0005622292,"about_ca_system_score_gemma":0.000021970489,"threshold_uncertainty_score":0.9999539},"labels":[],"label_agreement":null},{"id":"W2113648224","doi":"10.1128/aem.00486-09","title":"Thermotolerant Coliforms Are Not a Good Surrogate for <i>Campylobacter</i> spp. in Environmental Water","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Centre Hospitalier Universitaire de Sherbrooke; Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Campylobacter; Campylobacter jejuni; Feces; Fecal coliform; Campylobacter coli; Biology; Veterinary medicine; Indicator bacteria; Microbiology; Surface water; Indicator organism; Bacteria; Water quality; Ecology; Environmental science; Environmental engineering; Medicine","score_opus":0.007588320597347779,"score_gpt":0.1697089077003391,"score_spread":0.16212058710299132,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113648224","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99772495,0.00017538613,0.0000026799419,0.00085335673,0.00006623892,0.0005573122,0.00040245507,0.000026879095,0.00019074504],"genre_scores_gemma":[0.99490386,0.00027233426,0.000039761442,0.0036024896,0.00010756293,0.00006182078,0.0009232474,0.000002893622,0.00008602588],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983515,0.000055852954,0.00035051562,0.0005632757,0.000038175043,0.00064067944],"domain_scores_gemma":[0.9996215,0.00010733171,0.000091046764,0.00008040053,9.670981e-7,0.0000987392],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021256834,0.00028944502,0.00042092966,0.000015883777,0.00013951965,0.00001613709,0.00018369559,0.00025987974,0.0002607758],"category_scores_gemma":[0.0000017365278,0.00011693341,0.000097452124,0.000030054027,0.00018501705,0.000047457972,0.0000878571,0.00014445296,0.00010036156],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017693511,0.00019922561,0.022035597,0.0000026305715,0.000011691385,0.00000417492,0.00007967819,0.0000021181152,0.96211344,0.000041399784,0.000048695078,0.015284415],"study_design_scores_gemma":[0.0016274309,0.0006492838,0.8119482,0.0000124845055,0.00002403204,0.0001179274,0.00072642474,0.000016338945,0.1470155,0.0010682545,0.036202207,0.00059196365],"about_ca_topic_score_codex":0.00001975858,"about_ca_topic_score_gemma":0.000042926968,"teacher_disagreement_score":0.8150979,"about_ca_system_score_codex":0.000057417663,"about_ca_system_score_gemma":0.0000012266764,"threshold_uncertainty_score":0.47684062},"labels":[],"label_agreement":null},{"id":"W2113787106","doi":"10.1128/aem.71.8.4893-4896.2005","title":"Fluorophore-Labeled Primers Improve the Sensitivity, Versatility, and Normalization of Denaturing Gradient Gel Electrophoresis","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microfluidic and Capillary Electrophoresis Applications","field":"Engineering","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Killam Trusts","keywords":"Temperature gradient gel electrophoresis; Fluorophore; Chromatography; Gel electrophoresis; Electrophoresis; Normalization (sociology); Chemistry; Fluorescence; Biology; Molecular biology; Bacteria; Genetics; Physics; Optics","score_opus":0.0018213206677790154,"score_gpt":0.1451335019490069,"score_spread":0.14331218128122789,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113787106","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9863333,0.01285684,0.0002777238,0.00006231826,0.000022649227,0.00025847869,0.000030891915,0.000027609402,0.00013017298],"genre_scores_gemma":[0.9705663,0.029068954,0.0001321264,0.000082136554,0.000031345582,0.00002219051,0.000066255794,0.0000186606,0.000012031655],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99930435,0.000023229766,0.00018681202,0.00021399604,0.00003459387,0.00023702848],"domain_scores_gemma":[0.9997172,0.000038142247,0.000039739076,0.00016023025,0.000002618607,0.000042080996],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009606675,0.0001589155,0.00016975094,0.00003621896,0.00010861944,0.000008119587,0.000062387495,0.000098547745,0.000017769496],"category_scores_gemma":[0.0000010895915,0.00013092312,0.00002665876,0.000051857533,0.0002476301,0.000026219595,0.000077002,0.00012378878,0.0000056541185],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000141893415,0.000023528055,0.00030056597,0.000015436322,0.00004904441,3.0012873e-7,0.00019780449,0.000030371257,0.9942334,0.00037982242,0.0004750428,0.0042804824],"study_design_scores_gemma":[0.0003397075,0.000041662253,0.0044987667,0.0000025264312,0.000046445566,0.00004534618,0.0001243279,0.0003910411,0.9860087,0.000057613237,0.008285606,0.00015828216],"about_ca_topic_score_codex":0.000013280661,"about_ca_topic_score_gemma":0.0000065254694,"teacher_disagreement_score":0.016212115,"about_ca_system_score_codex":0.00006392467,"about_ca_system_score_gemma":0.0000045532183,"threshold_uncertainty_score":0.533889},"labels":[],"label_agreement":null},{"id":"W2114198088","doi":"10.1128/aem.00225-12","title":"Remarkable Ability of Pandoraea pnomenusa B356 Biphenyl Dioxygenase To Metabolize Simple Flavonoids","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Phytochemistry and Bioactivity Studies","field":"Pharmacology, Toxicology and Pharmaceutics","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"","keywords":"Biphenyl; Flavanone; Dioxygenase; Biochemistry; Chemistry; Bacteria; Catabolism; Enzyme; Biology; Naringenin; Stereochemistry; Flavonoid; Genetics; Organic chemistry","score_opus":0.04233644828566583,"score_gpt":0.33312547761260847,"score_spread":0.2907890293269426,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114198088","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99504703,0.0013060198,0.00002815683,0.0001346766,0.00017874035,0.0003600144,0.0005201132,0.000022778193,0.0024024898],"genre_scores_gemma":[0.99818885,0.00030113306,0.00018647488,0.0008232129,0.0001539428,0.00007285203,0.00013990726,0.000012809193,0.000120806006],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99870384,0.0001105852,0.00028178372,0.0003329749,0.000035095247,0.0005357446],"domain_scores_gemma":[0.99930125,0.00017221662,0.0000981259,0.00019730705,0.0000040712243,0.0002270019],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040007237,0.0002442859,0.00042466473,0.00003487137,0.00017833781,0.0000032953617,0.00013176202,0.00025110057,0.00054121326],"category_scores_gemma":[0.00001353143,0.00021724521,0.00006994233,0.000073759235,0.00051406195,0.000055315522,0.00028069873,0.00026952947,0.00007047017],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003053615,0.00050053775,0.026335865,0.000040202263,0.00017766518,7.62509e-7,0.00041870482,0.0000073523984,0.96746564,0.00011233057,0.00092556817,0.003709998],"study_design_scores_gemma":[0.00084994547,0.00007442553,0.016263343,0.0000016472607,0.0000894625,0.000016999627,0.0004676384,0.00000198836,0.8241221,0.00010879252,0.1577702,0.00023349347],"about_ca_topic_score_codex":0.000009808864,"about_ca_topic_score_gemma":0.00000184608,"teacher_disagreement_score":0.15684463,"about_ca_system_score_codex":0.00005185363,"about_ca_system_score_gemma":0.0000085369165,"threshold_uncertainty_score":0.88590026},"labels":[],"label_agreement":null},{"id":"W2114626225","doi":"10.1128/aem.00995-13","title":"Contrasting Results of Culture-Dependent and Molecular Analyses of Mycobacterium avium subsp. paratuberculosis from Wood Bison","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Government of Northwest Territories; University of Calgary","funders":"","keywords":"Paratuberculosis; Biology; Feces; Herd; Mycobacterium; Microbiology; Veterinary medicine; Bacteria; Genetics; Ecology","score_opus":0.011296288970331017,"score_gpt":0.24410263617264377,"score_spread":0.23280634720231275,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114626225","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99706894,0.0014870757,0.000017003853,0.00013905046,0.000021668819,0.0003541997,0.00050791464,0.000008268682,0.00039586646],"genre_scores_gemma":[0.99741054,0.0012135627,0.00046129944,0.00015955589,0.000026482227,0.000031639243,0.00066159555,0.000012689726,0.000022631384],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989459,0.000042994823,0.0003541307,0.0003402179,0.000067747394,0.00024900443],"domain_scores_gemma":[0.99942863,0.00010154001,0.00013417559,0.00018442652,0.000009863293,0.00014135687],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007242303,0.00017382372,0.00045571386,0.000059565347,0.00003077164,0.00000898168,0.00005659279,0.00015523852,0.00015768316],"category_scores_gemma":[0.000019900417,0.00013530166,0.000054370452,0.000043842265,0.00029802468,0.00003526183,0.0001166576,0.00012359876,0.000014653822],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021503479,0.0001576382,0.027590811,0.000047896825,0.00018825798,0.000005056902,0.00016377986,5.6775815e-7,0.97049546,0.000009258409,0.00021189144,0.00091434934],"study_design_scores_gemma":[0.0021368172,0.0003252676,0.13417606,0.00003170635,0.00015527263,0.00002323066,0.00041912813,0.0000075250778,0.86232907,0.00004195825,0.00023707365,0.000116908974],"about_ca_topic_score_codex":0.00063679094,"about_ca_topic_score_gemma":0.0000052366095,"teacher_disagreement_score":0.1081664,"about_ca_system_score_codex":0.000020111307,"about_ca_system_score_gemma":0.000008432024,"threshold_uncertainty_score":0.55174416},"labels":[],"label_agreement":null},{"id":"W2114804552","doi":"10.1128/aem.69.10.5870-5874.2003","title":"Mycotoxin Fumonisin B<sub>1</sub>Increases Intestinal Colonization by Pathogenic<i>Escherichia coli</i>in Pigs","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycotoxins in Agriculture and Food","field":"Agricultural and Biological Sciences","cited_by":134,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Institut National de la Recherche Agronomique","keywords":"Mycotoxin; Colonization; Pathogenic Escherichia coli; Microbiology; Biology; Escherichia coli; Toxin; Fumonisin; Ingestion; Inoculation; Fumonisin B1; Pathogenic bacteria; Bacteria; Food science; Immunology","score_opus":0.003996220342826875,"score_gpt":0.15139857848398755,"score_spread":0.14740235814116068,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114804552","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99789625,0.0006893953,0.0000071214745,0.00007054259,0.000044347827,0.00034296082,0.00024143356,0.00003130704,0.0006766451],"genre_scores_gemma":[0.9978216,0.0004873217,0.00010643088,0.00059053476,0.000044315064,0.000056847624,0.0008530852,0.0000027146511,0.000037101217],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998765,0.00010232117,0.0002581016,0.00045802636,0.000049954306,0.00036658355],"domain_scores_gemma":[0.99965304,0.00010415656,0.00008845792,0.000054489876,0.0000031532666,0.00009672756],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001350278,0.00024073961,0.00024275608,0.000011285067,0.00015450006,0.000025545625,0.00012391296,0.00020802635,0.00020417784],"category_scores_gemma":[0.000011135064,0.0001147109,0.000045091925,0.00014946364,0.00016410027,0.000043339674,0.0000650007,0.00016782459,0.0000698282],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002633518,0.00024311591,0.008520627,0.0000031585637,0.000008864253,0.000003976949,0.000028092847,0.000001437601,0.9876787,0.00020309418,0.00056785985,0.0027147525],"study_design_scores_gemma":[0.00062798685,0.00038940812,0.103529625,0.00001358283,0.000024496168,0.00012973194,0.00050761213,0.000003443058,0.8673414,0.00027652716,0.026638415,0.0005177557],"about_ca_topic_score_codex":0.000022979546,"about_ca_topic_score_gemma":0.00009950019,"teacher_disagreement_score":0.12033727,"about_ca_system_score_codex":0.000048487982,"about_ca_system_score_gemma":0.0000040738933,"threshold_uncertainty_score":0.4677775},"labels":[],"label_agreement":null},{"id":"W2114943005","doi":"10.1128/aem.01604-14","title":"Influence of Populus Genotype on Gene Expression by the Wood Decay Fungus Phanerochaete chrysosporium","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Phanerochaete; Chrysosporium; Biology; Lignin; Gene; clone (Java method); Fungus; Gene expression; Botany; Genotype; Microbiology; Biochemistry","score_opus":0.002646278507443821,"score_gpt":0.15052111276521915,"score_spread":0.14787483425777534,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114943005","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989314,0.0005025754,0.00007292269,0.000048459216,0.000094570474,0.00010275435,0.000028202689,0.000027406235,0.00019169245],"genre_scores_gemma":[0.9992329,0.00032656634,0.00006725916,0.00018234467,0.000039781073,0.0000060724815,0.00008510754,0.000011042171,0.00004896191],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99953777,0.0000131801,0.00011223346,0.00017328832,0.000026711929,0.00013682843],"domain_scores_gemma":[0.9997772,0.000011164463,0.000029760638,0.00015046513,0.0000010208855,0.000030405528],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000054982458,0.00011473726,0.0001052844,0.000014213142,0.00005507819,0.0000026839944,0.00008635962,0.00009987492,0.000031167063],"category_scores_gemma":[4.0315663e-7,0.000079855454,0.000016106947,0.00002157999,0.00013006237,0.00001546455,0.000048810212,0.00009504941,0.00004225168],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021066888,0.00001696872,0.0001075658,0.000017598148,0.000009231929,1.2396892e-7,0.00005762932,0.0005202663,0.997369,0.000014668711,0.00037954267,0.0014863457],"study_design_scores_gemma":[0.00028551448,0.00006157479,0.0010433772,0.0000046023106,0.0000074326445,0.000012832557,0.00004167739,0.000021553866,0.980003,0.000013823918,0.018404925,0.00009969777],"about_ca_topic_score_codex":0.000003125754,"about_ca_topic_score_gemma":1.515362e-7,"teacher_disagreement_score":0.018025383,"about_ca_system_score_codex":0.000017045944,"about_ca_system_score_gemma":8.234224e-7,"threshold_uncertainty_score":0.3256411},"labels":[],"label_agreement":null},{"id":"W2114962025","doi":"10.1128/aem.01974-08","title":"High-Level Molecular Diversity of Copper-Zinc Superoxide Dismutase Genes among and within Species of Arbuscular Mycorrhizal Fungi","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Biology; Locus (genetics); Gene; Genetics; Population; Genetic diversity; Superoxide dismutase; Fungus; Oxidative stress; Botany; Biochemistry","score_opus":0.006320610137428622,"score_gpt":0.15008406013492576,"score_spread":0.14376344999749713,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114962025","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996201,0.00080789614,0.00000910047,0.00004921905,0.000043993223,0.00013264964,0.0026172295,0.000008271572,0.00013066108],"genre_scores_gemma":[0.99709344,0.0011561547,0.00016050672,0.00010633957,0.000021780676,0.000001701194,0.0014242376,8.5908067e-7,0.00003500635],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99935144,0.000028623952,0.00018920338,0.00023415794,0.00004281955,0.00015372981],"domain_scores_gemma":[0.9996604,0.00014290276,0.000084076026,0.000048688402,0.000003260591,0.000060714712],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000059461032,0.00014002385,0.00023864745,0.000014472498,0.00011930531,0.000005401559,0.00009807127,0.00010573261,0.00037033198],"category_scores_gemma":[0.0000032652163,0.000069794994,0.00004920237,0.000042255397,0.000117112446,0.00003931388,0.00015690998,0.00007832921,0.000009470451],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000050702074,0.000070167625,0.10741266,0.00000472304,0.000019044444,0.000003928048,0.00009061925,0.000012096482,0.89032173,0.0010709653,0.00007051767,0.00087284617],"study_design_scores_gemma":[0.00017169773,0.00034552123,0.38381153,0.000017076733,0.000058381378,0.00005538469,0.0009851835,0.000007638478,0.61305285,0.0006414847,0.0006226498,0.00023059738],"about_ca_topic_score_codex":0.00028468753,"about_ca_topic_score_gemma":0.000024803338,"teacher_disagreement_score":0.2772689,"about_ca_system_score_codex":0.000008975229,"about_ca_system_score_gemma":0.000001267249,"threshold_uncertainty_score":0.40548757},"labels":[],"label_agreement":null},{"id":"W2115008555","doi":"10.1128/aem.72.4.2547-2555.2006","title":"Identification of Essential Operons with a Rhamnose-Inducible Promoter in <i>Burkholderia cenocepacia</i>","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Burkholderia cenocepacia; Biology; Operon; Burkholderia cepacia complex; Gene; Transposable element; Burkholderia; Computational biology; Genome; Genetics; Insertion sequence; Promoter; Microbiology; Gene expression; Bacteria; Escherichia coli","score_opus":0.003558749044093729,"score_gpt":0.20980267624585341,"score_spread":0.20624392720175969,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115008555","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99859536,0.00022562183,0.0001104503,0.00009817641,0.000015586402,0.0004115755,0.000050788756,0.000008196635,0.00048427624],"genre_scores_gemma":[0.99881655,0.000044188604,0.0006132196,0.000027380238,0.000025601548,0.00003471401,0.00024833984,0.000012760119,0.00017722673],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992155,0.000015788992,0.00022925422,0.00028025894,0.00005086227,0.00020837066],"domain_scores_gemma":[0.99973315,0.000018489429,0.0000610749,0.00014987077,0.0000026729017,0.000034753724],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007923409,0.000105710445,0.00021763972,0.000068784495,0.000028539649,0.000005596876,0.000045267618,0.00006779521,0.00006926759],"category_scores_gemma":[0.0000021579967,0.00008429924,0.000017981594,0.00006553288,0.00036747885,0.000033854376,0.000048710554,0.000095334995,0.000014082386],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019478117,0.00024483574,0.009421633,0.00004273765,0.00001337271,0.0000061278215,0.000064169835,0.000011691619,0.98933315,0.00009379593,0.000052299976,0.00052139827],"study_design_scores_gemma":[0.0019232705,0.00023730747,0.06782726,0.000027694397,0.000023388784,0.00013606156,0.00024179537,0.000016028675,0.9283195,0.00013885385,0.000998295,0.00011053566],"about_ca_topic_score_codex":0.00005806644,"about_ca_topic_score_gemma":0.000031092288,"teacher_disagreement_score":0.06101365,"about_ca_system_score_codex":0.000042234595,"about_ca_system_score_gemma":0.000014991726,"threshold_uncertainty_score":0.34376234},"labels":[],"label_agreement":null},{"id":"W2115338073","doi":"10.1128/aem.71.5.2303-2309.2005","title":"Contribution of <i>Archaea</i> to Total Prokaryotic Production in the Deep Atlantic Ocean","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":568,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek","keywords":"Crenarchaeota; Euryarchaeota; Mesopelagic zone; Archaea; Bathyal zone; Thaumarchaeota; Biology; Water column; Oceanography; Ecology; Pelagic zone; Bacteria; Geology; Paleontology","score_opus":0.0033812902994019255,"score_gpt":0.17532738488690955,"score_spread":0.17194609458750762,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115338073","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998302,0.000036221827,0.000020112499,0.00082349643,0.00004288626,0.00047315942,0.000008625735,0.0000065809313,0.0002869474],"genre_scores_gemma":[0.99869704,0.000031916996,0.00014165977,0.00088833465,0.00003288829,0.000015534055,0.00016306278,0.0000055416726,0.00002399986],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99915415,0.00013118457,0.00019862555,0.00024062413,0.000028452474,0.00024695933],"domain_scores_gemma":[0.9996693,0.00005677508,0.000055393557,0.0001875838,8.002763e-7,0.00003010856],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002616544,0.00011861657,0.00016926636,0.000028949473,0.000109229215,0.0000025556149,0.00017247246,0.00009863302,0.00039055652],"category_scores_gemma":[0.000007992797,0.00009209272,0.000023188106,0.00008112918,0.00047046266,0.000038184153,0.00022048266,0.00017881361,0.00016944954],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000069570946,0.0001973953,0.026072068,0.0000034716331,0.0000066710845,6.5514587e-7,0.0012895117,0.0008376592,0.9691219,0.00013562455,0.00062587636,0.0016396302],"study_design_scores_gemma":[0.0020612173,0.00095831446,0.8360719,0.000017218319,0.00006365949,0.0006267326,0.0017519598,0.00011234547,0.12749195,0.0016620647,0.028445236,0.0007373854],"about_ca_topic_score_codex":0.00007136044,"about_ca_topic_score_gemma":0.0005108668,"teacher_disagreement_score":0.8416299,"about_ca_system_score_codex":0.000065144646,"about_ca_system_score_gemma":0.0000021319565,"threshold_uncertainty_score":0.427632},"labels":[],"label_agreement":null},{"id":"W2115365174","doi":"10.1128/aem.00288-11","title":"Macroscopic Biofilms in Fracture-Dominated Sediment That Anaerobically Oxidize Methane","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Geological Survey of Canada","funders":"","keywords":"Archaea; Biology; Cold seep; Biofilm; Chloroflexi (class); Anaerobic oxidation of methane; Bacteria; Deltaproteobacteria; Phylum; 16S ribosomal RNA; Microbiology; Methane; Ecology; Bacteroidetes; Paleontology","score_opus":0.008594660653318476,"score_gpt":0.18410903559654077,"score_spread":0.17551437494322228,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115365174","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99268174,0.00028435196,0.0000394023,0.00006031478,0.000099971454,0.00037669123,0.000019721138,0.000025629739,0.006412171],"genre_scores_gemma":[0.9964821,0.0003482394,0.0016860839,0.0010060435,0.000011331362,0.0000387293,0.00011335238,0.000025233247,0.00028890403],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984464,0.00007302187,0.00029302633,0.00060044276,0.00006599887,0.0005211169],"domain_scores_gemma":[0.9994798,0.000034095465,0.000102972896,0.00023958208,3.9742793e-7,0.00014315477],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00021079609,0.00029645875,0.0003260519,0.00005438595,0.0000737869,0.00000765592,0.000208993,0.00028228975,0.0067037665],"category_scores_gemma":[0.0000012148031,0.00023927756,0.000044483546,0.0001031113,0.00055379316,0.000058726255,0.0003123888,0.0002943858,0.00057417224],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007333999,0.00020485943,0.01754762,0.000004561996,0.000027359361,0.000017838734,0.0008410701,0.0000390925,0.9798007,0.000053093485,0.00012399338,0.0012664747],"study_design_scores_gemma":[0.0034688313,0.000384834,0.122103155,0.000016774127,0.00006482815,0.00011047173,0.0009876216,0.00004403858,0.854068,0.0012178578,0.016621893,0.00091171253],"about_ca_topic_score_codex":0.00039194818,"about_ca_topic_score_gemma":0.00003340428,"teacher_disagreement_score":0.12573272,"about_ca_system_score_codex":0.0001168028,"about_ca_system_score_gemma":0.0000034699797,"threshold_uncertainty_score":0.9942042},"labels":[],"label_agreement":null},{"id":"W2115542080","doi":"10.1128/aem.66.3.1031-1037.2000","title":"Selective Inhibition of the Oxidation of Ferrous Iron or Sulfur in <i>Thiobacillus ferrooxidans</i>","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Metal Extraction and Bioleaching","field":"Engineering","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Ferrous; Chemistry; Sulfur; Inorganic chemistry; Chloride; Cyanide; Phosphate; Leaching (pedology); Thiobacillus; Nuclear chemistry; Biochemistry; Organic chemistry; Geology","score_opus":0.004025663930570603,"score_gpt":0.16224789298870992,"score_spread":0.15822222905813932,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115542080","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99825615,0.000079138175,0.000029328836,0.000011245046,0.000035534755,0.00013745409,0.000022966276,0.0000106847165,0.0014174907],"genre_scores_gemma":[0.99958134,0.00018398905,0.000055217868,0.000045301436,0.00000835251,0.000006156949,0.000038035676,0.0000073158776,0.00007430964],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99956924,0.000023453435,0.00018366867,0.00010473221,0.000022225277,0.00009667238],"domain_scores_gemma":[0.9998749,0.000014637749,0.000028889252,0.00006829582,7.0717874e-7,0.000012604074],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000058245518,0.000085105996,0.00012695375,0.0000271322,0.000022427485,0.0000016069575,0.000035766636,0.00008583338,0.00014959156],"category_scores_gemma":[0.0000010022763,0.000060071332,0.00002209842,0.000057068388,0.000088219145,0.000026883996,0.000014365639,0.00010681833,0.0000073650185],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004155371,0.000035691628,0.00034468956,0.000019379571,0.000005844913,2.2219294e-7,0.00019388476,0.0011172745,0.9912739,0.0000268125,0.000015127456,0.0069256434],"study_design_scores_gemma":[0.00052684516,0.00004446243,0.019614015,0.00001489332,0.000008650345,0.0000323145,0.00023891989,0.0001091636,0.97831374,0.0000399074,0.0009560986,0.00010096724],"about_ca_topic_score_codex":0.000021921585,"about_ca_topic_score_gemma":0.000048149173,"teacher_disagreement_score":0.019269325,"about_ca_system_score_codex":0.000038086793,"about_ca_system_score_gemma":0.0000025064385,"threshold_uncertainty_score":0.24496378},"labels":[],"label_agreement":null},{"id":"W2115825129","doi":"10.1128/aem.01242-13","title":"Rhodococcus jostii Porin A (RjpA) Functions in Cholate Uptake","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Steroid Chemistry and Biochemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Porin; Microbiology; Bacteria; Biology; Biochemistry; Rhodococcus; Bacterial outer membrane; Chemistry; Escherichia coli; Gene; Genetics","score_opus":0.002971847135422475,"score_gpt":0.16326282444130305,"score_spread":0.16029097730588057,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115825129","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970821,0.00040670857,0.000028495822,0.00007134081,0.000067124434,0.00017521497,0.000058185575,0.000009180085,0.002101607],"genre_scores_gemma":[0.9967117,0.00014140239,0.0001151405,0.00033963736,0.00010330034,0.00008297928,0.0008815736,0.000015164668,0.0016091189],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990444,0.000012063796,0.00019271384,0.0004384246,0.00002219817,0.00029015756],"domain_scores_gemma":[0.9996477,0.0000065762442,0.00004737378,0.00021876935,0.0000023079454,0.00007731513],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000047859823,0.0001905157,0.0001436738,0.000019188603,0.00006183334,0.00001352962,0.000110281755,0.00025547735,0.00023963329],"category_scores_gemma":[0.0000036694769,0.00018283076,0.00004001621,0.000031560958,0.00015739904,0.0000032867379,0.00016389794,0.00013548585,0.000103146136],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025022771,0.00007004978,0.0059391055,0.0000084009735,0.000020168643,0.0000015543051,0.00001630785,0.0000044103717,0.99161994,0.0000030107885,0.0010162448,0.0012757826],"study_design_scores_gemma":[0.0010033875,0.00008063068,0.026623089,0.0000053050117,0.000010463439,0.00013107277,0.00033268757,0.0000036435185,0.9381056,0.00004411394,0.03335293,0.0003071004],"about_ca_topic_score_codex":0.000011928988,"about_ca_topic_score_gemma":0.000003642767,"teacher_disagreement_score":0.053514365,"about_ca_system_score_codex":0.000018889754,"about_ca_system_score_gemma":0.000008169503,"threshold_uncertainty_score":0.7455622},"labels":[],"label_agreement":null},{"id":"W2116107445","doi":"10.1128/aem.68.4.1728-1734.2002","title":"Carbon Isotope Fractionation during Aerobic Biodegradation of Trichloroethene by <i>Burkholderia cepacia</i> G4: a Tool To Map Degradation Mechanisms","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Engineering and Physical Sciences Research Council; Natural Sciences and Engineering Research Council of Canada; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Deutscher Akademischer Austauschdienst; National Science Foundation","keywords":"Biodegradation; Fractionation; Isotope fractionation; Burkholderia; Chemistry; Degradation (telecommunications); Isotopes of carbon; Kinetic isotope effect; Environmental chemistry; Isotope; Microbial biodegradation; Trichloroethylene; Chromatography; Deuterium; Microorganism; Organic chemistry; Total organic carbon; Bacteria; Biology","score_opus":0.004665151587083319,"score_gpt":0.15920456535976843,"score_spread":0.1545394137726851,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116107445","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99821126,0.000055265184,0.00030536822,0.00026191786,0.00011668779,0.00045871967,0.00012525688,0.000027611275,0.00043793648],"genre_scores_gemma":[0.99740314,0.0001555205,0.00109703,0.00036956862,0.000017476146,0.000021477195,0.00037378154,0.000016383483,0.0005456441],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998839,0.000036785204,0.00033404477,0.0004348238,0.000102067126,0.00025326328],"domain_scores_gemma":[0.99957687,0.0000186261,0.00016653967,0.00015944202,0.000002085729,0.00007643969],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001082223,0.00020508909,0.00020012775,0.0000602048,0.00010827995,0.000013189283,0.00011445894,0.00016319445,0.0017966793],"category_scores_gemma":[0.0000046083014,0.0001981717,0.00003460124,0.00013115181,0.00012490356,0.00009359192,0.00011818928,0.000091109076,0.00027955745],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031842617,0.0001220512,0.0009708678,0.0000063496564,0.000010582003,3.452488e-7,0.00015090845,0.000018784662,0.9950874,0.000026344807,0.0009718667,0.002602683],"study_design_scores_gemma":[0.000772435,0.000093968854,0.004751765,0.000004486683,0.000018161487,0.000012840658,0.000120898534,0.00008066737,0.9876689,0.00005999342,0.0061421674,0.00027375668],"about_ca_topic_score_codex":0.000069999325,"about_ca_topic_score_gemma":0.000015784566,"teacher_disagreement_score":0.007418515,"about_ca_system_score_codex":0.00016702,"about_ca_system_score_gemma":0.0000016364286,"threshold_uncertainty_score":0.9991158},"labels":[],"label_agreement":null},{"id":"W2116207162","doi":"10.1128/aem.00374-11","title":"Increased Fitness and Alteration of Metabolic Pathways during Bacillus subtilis Evolution in the Laboratory","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"University of Arizona; National Aeronautics and Space Administration; National Science Foundation","keywords":"Biology; Bacillus subtilis; Motility; Experimental evolution; Phenotype; Strain (injury); Genetics; Acetoin; Population; Bacillaceae; Gene; Microbiology; Bacteria","score_opus":0.0042749193419525326,"score_gpt":0.15849212945078633,"score_spread":0.1542172101088338,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116207162","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99822176,0.0012509592,0.00014719855,0.0000064428164,0.000016967077,0.000119782526,0.00007948405,0.0000018653327,0.00015555172],"genre_scores_gemma":[0.9990932,0.00044746083,0.00013778314,0.00008340349,0.000016332613,0.00001468806,0.00019416792,0.000005097981,0.000007883511],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99952173,0.000051158273,0.00012600483,0.00017732006,0.000017994445,0.000105799496],"domain_scores_gemma":[0.99981314,0.0000047014205,0.00004416844,0.000115441246,0.000002426887,0.00002012551],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010111474,0.00008442607,0.000091162554,0.000024947016,0.000042670472,0.0000023588568,0.000055330656,0.000094011055,0.000011496738],"category_scores_gemma":[0.0000026642615,0.000069221474,0.000013802633,0.00002754761,0.00020019084,0.0000022620704,0.00005730366,0.000044104025,0.0000015370969],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004019337,0.000045449764,0.017271008,0.0000071989334,0.000009062422,3.976661e-7,0.00027611924,0.000006176931,0.98156506,0.00062748796,0.000004157975,0.0001477002],"study_design_scores_gemma":[0.0009097262,0.00009184829,0.74329233,0.000002615189,0.000017007638,0.00003612287,0.0008792373,0.00004081291,0.2538862,0.0001446389,0.0005608702,0.0001386098],"about_ca_topic_score_codex":0.000027988583,"about_ca_topic_score_gemma":0.000036002344,"teacher_disagreement_score":0.72767884,"about_ca_system_score_codex":0.0000054577536,"about_ca_system_score_gemma":0.0000073448005,"threshold_uncertainty_score":0.282277},"labels":[],"label_agreement":null},{"id":"W2116437760","doi":"10.1128/aem.00375-11","title":"Changes in Bacterial Diversity Associated with Epithelial Tissue in the Beef Cow Rumen during the Transition to a High-Grain Diet","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":119,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Rumen; Biology; Food science; Transition (genetics); Animal science; Chemistry; Biochemistry; Fermentation","score_opus":0.009004792900468543,"score_gpt":0.1553186165339805,"score_spread":0.14631382363351195,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116437760","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983774,0.000009134903,3.2338306e-7,0.0009814958,0.000022998172,0.00031040146,0.0002188689,0.000006468124,0.000072904106],"genre_scores_gemma":[0.9990803,0.00003639194,0.000005662821,0.0005615369,0.000038935897,0.000037515096,0.00022924077,7.4247e-7,0.000009646411],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999395,0.00010494003,0.000077076096,0.00019901265,0.000025360443,0.00019857295],"domain_scores_gemma":[0.9998604,0.00005573752,0.000030234425,0.000029639898,0.0000010605831,0.000022928236],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000108649176,0.000098707744,0.00012560721,0.000010766413,0.00017790432,0.000006118649,0.00012546935,0.00007455017,0.00016427424],"category_scores_gemma":[0.0000015932012,0.000033970635,0.000012043295,0.00007116288,0.00017370457,0.000019105708,0.00011948488,0.00008284921,0.000009739075],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042017442,0.00014607098,0.0046611447,0.0000010615582,0.0000049188457,0.0000045538795,0.0016647549,4.235785e-7,0.9921566,0.000051061917,0.0000106542,0.00087854406],"study_design_scores_gemma":[0.0005262867,0.00060286955,0.97894824,0.000005084358,0.000005151167,0.000006747598,0.0013581124,1.9108803e-7,0.017870544,0.00020776883,0.0003708461,0.00009813615],"about_ca_topic_score_codex":0.00039373006,"about_ca_topic_score_gemma":0.0045369645,"teacher_disagreement_score":0.9742871,"about_ca_system_score_codex":0.00002420083,"about_ca_system_score_gemma":6.889883e-7,"threshold_uncertainty_score":0.25317326},"labels":[],"label_agreement":null},{"id":"W2116467640","doi":"10.1128/aem.01934-10","title":"Gene Cluster Conferring Streptomycin, Sulfonamide, and Tetracycline Resistance in <i>Escherichia coli</i> O157:H7 Phage Types 23, 45, and 67","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Public Health Agency of Canada","funders":"","keywords":"Escherichia coli; Tetracycline; Microbiology; Streptomycin; Biology; Multiple drug resistance; Locus (genetics); Genetics; Gene; Drug resistance; Antibiotics","score_opus":0.005641154733374338,"score_gpt":0.18424964667342653,"score_spread":0.17860849194005218,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116467640","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99618435,0.0023715815,0.000051468756,0.0000254418,0.000046543293,0.00022001508,0.00007906088,0.0000060719703,0.0010154586],"genre_scores_gemma":[0.9946441,0.0019491257,0.0023073216,0.0004248686,0.000042551143,0.000008869685,0.00021301079,0.000023778251,0.00038639142],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998931,0.000036250378,0.0002362355,0.0005058256,0.000022787233,0.00026792916],"domain_scores_gemma":[0.99964887,0.000015216023,0.00008054371,0.00018527012,0.000002530316,0.00006755366],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010066451,0.00021200629,0.0002240596,0.000027047388,0.000060977927,0.00001205794,0.00008440995,0.00021510893,0.000032692216],"category_scores_gemma":[0.0000048011334,0.00020476445,0.000019296147,0.000023283337,0.0004627139,0.000006199032,0.00019343088,0.00011034629,0.000007291358],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020751827,0.00005428463,0.04893084,0.000023099146,0.000028471914,0.000005454925,0.000096792966,3.5782955e-7,0.95025367,0.00007488037,0.000074947304,0.00024969215],"study_design_scores_gemma":[0.0022138846,0.00015899785,0.3092208,0.000023863948,0.000036046695,0.000054080316,0.00029094022,0.000004307387,0.67733127,0.00016694573,0.01000014,0.0004987532],"about_ca_topic_score_codex":0.000011630842,"about_ca_topic_score_gemma":0.000116543495,"teacher_disagreement_score":0.27292243,"about_ca_system_score_codex":0.00001391065,"about_ca_system_score_gemma":0.000008267081,"threshold_uncertainty_score":0.8350052},"labels":[],"label_agreement":null},{"id":"W2116477365","doi":"10.1128/aem.01953-15","title":"Temperature-Sensitive Salmonella enterica Serovar Enteritidis PT13a Expressing Essential Proteins of Psychrophilic Bacteria","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"","keywords":"Psychrophile; Salmonella enteritidis; Serotype; Microbiology; Salmonella enterica; Bacteria; Biology; Salmonella; Genetics","score_opus":0.011346093674886494,"score_gpt":0.1915635564318057,"score_spread":0.18021746275691922,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116477365","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985438,0.00022888454,0.000006382564,0.00020609781,0.00015345734,0.00028387524,0.00023107463,0.000027544938,0.00031886552],"genre_scores_gemma":[0.9983293,0.00013845183,0.00030962174,0.0003446289,0.00019302532,0.000023503098,0.00061485294,0.0000033484832,0.000043267482],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986416,0.00014111272,0.00033268606,0.0004842738,0.00004995022,0.00035036352],"domain_scores_gemma":[0.99954295,0.00006350874,0.0001564394,0.000089452886,0.000007317906,0.0001403154],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014665289,0.0002444786,0.00042179314,0.000015271673,0.00009417584,0.000016312035,0.00015208442,0.0002218129,0.00013430699],"category_scores_gemma":[0.0000060187886,0.00011941144,0.00007639856,0.00006274123,0.0004329678,0.00004614638,0.0001953502,0.00013109538,0.000032346492],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001904587,0.00012745301,0.002998918,0.000006794277,0.000028641753,0.0000049464625,0.00016500177,7.480658e-7,0.993396,0.000031060496,0.00019871394,0.0028512718],"study_design_scores_gemma":[0.0011499341,0.0010407654,0.1010987,0.00003948481,0.000048664187,0.00038979994,0.0022152602,0.0000067569167,0.88168836,0.0003322229,0.011379739,0.00061033934],"about_ca_topic_score_codex":0.00006201129,"about_ca_topic_score_gemma":0.000011810776,"teacher_disagreement_score":0.11170766,"about_ca_system_score_codex":0.000029531142,"about_ca_system_score_gemma":0.0000047911226,"threshold_uncertainty_score":0.4869457},"labels":[],"label_agreement":null},{"id":"W2116672989","doi":"10.1128/aem.05274-11","title":"Phenotypic Diversity Caused by Differential RpoS Activity among Environmental Escherichia coli Isolates","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Environment and Climate Change Canada; McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"rpoS; Biology; Escherichia coli; Microbiology; Sigma factor; Mutant; Bacteria; Phenotype; Enterobacteriaceae; Genetics; Gene; Gene expression; Promoter","score_opus":0.004040259331923389,"score_gpt":0.15212951806930833,"score_spread":0.14808925873738493,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116672989","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978573,0.0001859485,0.0010119854,0.000007963621,0.00007798365,0.0002093625,0.0002673847,0.000012794256,0.00036931795],"genre_scores_gemma":[0.99806124,0.0003178848,0.000114230665,0.00016277413,0.000035179593,0.000013526088,0.0008667366,0.000020312276,0.0004081043],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990457,0.0000411671,0.00012783849,0.00045810945,0.0000320008,0.0002951591],"domain_scores_gemma":[0.9996124,0.0000046779555,0.000075392934,0.00020052517,8.811849e-7,0.000106136606],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000036504098,0.00023086759,0.000171133,0.00001818168,0.00023060798,0.0000064524334,0.00014749632,0.00025871966,0.00029284708],"category_scores_gemma":[8.7407875e-7,0.00023411652,0.000056247205,0.000015231355,0.00054583483,0.0000042642514,0.00061259256,0.00011896428,0.000031978518],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000937606,0.00022431574,0.04116992,0.0000034559037,0.000073099895,5.8285224e-7,0.00014250017,0.0000018259814,0.957453,0.000012341944,0.00028289238,0.0005422727],"study_design_scores_gemma":[0.0017958197,0.00040574512,0.48646274,0.000002065165,0.000084670224,0.000011092003,0.0003505581,0.00011347348,0.5061688,0.00006688729,0.003910639,0.0006275422],"about_ca_topic_score_codex":0.00004024894,"about_ca_topic_score_gemma":0.000024347313,"teacher_disagreement_score":0.45128426,"about_ca_system_score_codex":0.000029832176,"about_ca_system_score_gemma":0.0000047105796,"threshold_uncertainty_score":0.9546995},"labels":[],"label_agreement":null},{"id":"W2116848998","doi":"10.1128/aem.71.10.5992-5998.2005","title":"Identifying Host Sources of Fecal Pollution: Diversity of <i>Escherichia coli</i> in Confined Dairy and Swine Production Systems","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fecal contamination and water quality","field":"Environmental Science","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Health Canada","keywords":"Escherichia coli; Feces; Host (biology); Pollution; Biology; Production (economics); Fecal coliform; Microbiology; Environmental science; Ecology; Water quality; Genetics","score_opus":0.010481717984535713,"score_gpt":0.1911322041320536,"score_spread":0.18065048614751789,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116848998","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99912655,0.00016427651,0.0000550147,0.00013047882,0.00004279238,0.00019474364,0.000025401976,0.0000059225313,0.0002548444],"genre_scores_gemma":[0.9996313,0.000055294764,0.00009744016,0.00007180095,0.0000134912225,0.0000042095376,0.000021555012,0.0000036775466,0.00010124492],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99932486,0.000050906583,0.00022098076,0.00023304803,0.000048235233,0.000121990706],"domain_scores_gemma":[0.9997736,0.000013577208,0.00009965393,0.0000786556,8.334332e-7,0.000033670938],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020072289,0.00009295164,0.00018199335,0.000026663176,0.00007432249,0.0000036930048,0.000060751776,0.000073641335,0.00008073485],"category_scores_gemma":[0.0000023068935,0.00008742449,0.000015957092,0.000048355214,0.00049868313,0.0000633049,0.00028639068,0.0000657472,0.0000090866315],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029961579,0.0000768243,0.13352177,0.00002096639,0.0000065571,3.1879762e-7,0.00073224015,0.000079772995,0.86482364,0.000097723896,0.000019023782,0.00059119397],"study_design_scores_gemma":[0.0007667218,0.00006275875,0.8378335,0.000011188421,0.000013495367,0.000011124819,0.0009819062,0.00004481316,0.15911463,0.000025300891,0.0010023158,0.00013222225],"about_ca_topic_score_codex":0.0002835292,"about_ca_topic_score_gemma":0.00005944929,"teacher_disagreement_score":0.70570904,"about_ca_system_score_codex":0.00005378591,"about_ca_system_score_gemma":0.0000014279167,"threshold_uncertainty_score":0.3565067},"labels":[],"label_agreement":null},{"id":"W2116850179","doi":"10.1128/aem.70.7.3898-3903.2004","title":"Disruption of the Subtilase Gene, <i>albin1</i> , in <i>Ophiostoma piliferum</i>","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme-mediated dye degradation","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Gene; Proteases; Extracellular; Complementary DNA; Transformation (genetics); Microbiology; Cell biology; Genetics; Biochemistry; Enzyme","score_opus":0.0034939147061113416,"score_gpt":0.14291853485836015,"score_spread":0.1394246201522488,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116850179","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990597,0.0001315357,0.0000012969833,0.0003599992,0.000051899908,0.00017989273,0.00009771835,0.000009040177,0.00010895952],"genre_scores_gemma":[0.99909586,0.00014407029,0.000031953405,0.00040452764,0.000029848077,0.000011963365,0.00026766496,9.683972e-7,0.000013174707],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994147,0.000025814708,0.00016615093,0.0002020683,0.00003467289,0.00015663805],"domain_scores_gemma":[0.9998207,0.000033266253,0.000066938774,0.0000505345,0.0000011283443,0.000027452135],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006738966,0.00009877816,0.00011366803,0.000007650864,0.00005886704,0.0000039828888,0.00011016534,0.00010448639,0.000026791178],"category_scores_gemma":[0.0000025545473,0.000038181122,0.000030863368,0.00009061687,0.00019177233,0.000028200824,0.00008590238,0.000089141766,0.00001647718],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001635141,0.00007848681,0.022715868,0.0000016685748,0.0000024855874,7.494867e-7,0.00003841506,0.000035014087,0.9749797,0.00016792744,0.000012714786,0.0019506164],"study_design_scores_gemma":[0.0005791511,0.00009423322,0.54464626,0.0000074297855,0.000008172366,0.000031884232,0.00023198739,0.0000019373342,0.4521817,0.0005939043,0.0014846979,0.0001386257],"about_ca_topic_score_codex":0.000087030494,"about_ca_topic_score_gemma":0.00039642208,"teacher_disagreement_score":0.522798,"about_ca_system_score_codex":0.00003377895,"about_ca_system_score_gemma":0.0000024127125,"threshold_uncertainty_score":0.1556981},"labels":[],"label_agreement":null},{"id":"W2116985181","doi":"10.1128/aem.00986-12","title":"Chromosomal Complementation Using Tn <i>7</i> Transposon Vectors in Enterobacteriaceae","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Colorado State University","keywords":"Transposase; Complementation; Biology; Transposable element; Plasmid; Genetics; Transposition (logic); Vector (molecular biology); Gene; Computational biology; Shuttle vector; Transposon mutagenesis; Recombinant DNA; Phenotype; Genome","score_opus":0.008943996148052502,"score_gpt":0.20710174170348972,"score_spread":0.19815774555543722,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116985181","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987907,0.000048623268,0.00008382168,0.00002617961,0.00019065508,0.00021794543,0.000082502025,0.000013638351,0.0005459514],"genre_scores_gemma":[0.99861765,0.000044125336,0.0006908671,0.00028687788,0.000049220085,0.000014079073,0.0002513234,0.000016435208,0.000029433297],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990798,0.000035717796,0.00021803236,0.0002488994,0.000026213342,0.00039129323],"domain_scores_gemma":[0.99975,0.000014499215,0.000060014765,0.00009681982,2.4727777e-7,0.00007839482],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007160011,0.00016991117,0.00016743704,0.00003137504,0.000095211064,0.000011438401,0.00007392293,0.00008427397,0.0028302132],"category_scores_gemma":[3.803418e-7,0.00016950228,0.000033136905,0.000050084407,0.00019995288,0.00018462916,0.00010855082,0.00011353293,0.00018708772],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002062108,0.00013491667,0.10705476,0.0000030897393,0.000007344563,7.935642e-7,0.0005027586,0.000017626075,0.89144415,0.00001250667,0.00004595183,0.0007554686],"study_design_scores_gemma":[0.0011397494,0.00007060595,0.8435221,0.000010446472,0.000031657284,0.00018487763,0.00059246225,0.000025043197,0.13405477,0.000012748801,0.019975062,0.00038048634],"about_ca_topic_score_codex":0.0001756035,"about_ca_topic_score_gemma":0.000082826635,"teacher_disagreement_score":0.7573894,"about_ca_system_score_codex":0.00019735216,"about_ca_system_score_gemma":0.0000014025482,"threshold_uncertainty_score":0.9980813},"labels":[],"label_agreement":null},{"id":"W2117103556","doi":"10.1128/aem.01470-15","title":"Microbial Community Composition, Functions, and Activities in the Gulf of Mexico 1 Year after the Deepwater Horizon Accident","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Fisheries and Oceans Canada; Bedford Institute of Oceanography; National Research Council Canada","funders":"","keywords":"Deepwater horizon; Composition (language); Horizon; Environmental science; Microbial population biology; Ecology; Biology; Oil spill; Environmental protection; Bacteria; Mathematics; Paleontology","score_opus":0.008438388021797376,"score_gpt":0.1879687181322526,"score_spread":0.17953033011045522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117103556","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984688,0.00008668137,0.000012904676,0.00027926711,0.00005656202,0.00022936103,0.000043163098,0.000004862184,0.0008183851],"genre_scores_gemma":[0.99885654,0.000058497928,0.000049247352,0.0007871212,0.000015611928,0.000032338838,0.00015806055,0.0000067542937,0.000035821795],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989163,0.00053875387,0.00017384862,0.00014800597,0.000030145178,0.00019294342],"domain_scores_gemma":[0.9994826,0.00015982421,0.00006140399,0.00026493103,8.811796e-7,0.000030402412],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042594908,0.0001360322,0.00017055204,0.000021818178,0.00024630415,0.000009921517,0.0002442475,0.000121343226,0.0003417649],"category_scores_gemma":[0.0000021849519,0.00008759435,0.000024445902,0.000043561973,0.0013655568,0.000052055293,0.0005188002,0.0003916448,0.000055916265],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034515682,0.00026610977,0.08315914,0.0000043963623,0.000026357857,0.0000010618705,0.005358727,0.000049418242,0.9069449,0.0000717046,0.0031801157,0.00059292663],"study_design_scores_gemma":[0.003462353,0.0012913853,0.8733265,0.000017045317,0.00013603632,0.00046788075,0.03827621,0.0000079186175,0.040885687,0.004346935,0.037076943,0.00070509885],"about_ca_topic_score_codex":0.00037691207,"about_ca_topic_score_gemma":0.0009863904,"teacher_disagreement_score":0.8660592,"about_ca_system_score_codex":0.000049267885,"about_ca_system_score_gemma":0.0000036628212,"threshold_uncertainty_score":0.5031451},"labels":[],"label_agreement":null},{"id":"W2117426427","doi":"10.1128/aem.67.3.1335-1342.2001","title":"Habitat Association in Two Genetic Groups of the Insect-Pathogenic Fungus<i>Metarhizium anisopliae</i>: Uncovering Cryptic Species?","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Entomopathogenic Microorganisms in Pest Control","field":"Agricultural and Biological Sciences","cited_by":264,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Trent University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Metarhizium anisopliae; Species complex; Pathogenic fungus; Population; Insect; Metarhizium; Host (biology); Ecology; Habitat; Zoology; Population genetics; Entomology; Fungus; Biological pest control; Genetics; Botany; Phylogenetic tree; Gene","score_opus":0.004832352946960238,"score_gpt":0.1594125363547125,"score_spread":0.15458018340775226,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117426427","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983824,0.0006664925,0.0000064458995,0.00013413308,0.00013666047,0.0002959754,0.000084885556,0.000012578545,0.0002804552],"genre_scores_gemma":[0.9988427,0.00039793045,0.000093463794,0.00035901592,0.000087666325,0.000017018443,0.000054210268,0.0000027981123,0.00014519694],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988289,0.00009294795,0.0003184621,0.00034348975,0.00007310411,0.00034312042],"domain_scores_gemma":[0.9995466,0.00013336088,0.00018021783,0.00009561812,0.000003447719,0.0000407716],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019386342,0.0001804156,0.0002530918,0.000014436544,0.00010111799,0.0000139369795,0.00024140971,0.00011882736,0.00030240606],"category_scores_gemma":[0.000011576239,0.00008308465,0.00007960764,0.00015342183,0.00012980158,0.00003284249,0.00021472001,0.0001595945,0.000033100296],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018525945,0.000055698834,0.25496566,0.0000022811594,0.000011416972,0.0000021268818,0.000050790393,0.0000232282,0.74323404,0.000044099263,0.000013406338,0.0015786886],"study_design_scores_gemma":[0.0007028733,0.00010035997,0.94528735,0.000007970107,0.000033618042,0.000075609125,0.00021109321,0.000009949873,0.049477752,0.00054687326,0.0033306493,0.00021591691],"about_ca_topic_score_codex":0.000060968945,"about_ca_topic_score_gemma":0.00068548945,"teacher_disagreement_score":0.6937563,"about_ca_system_score_codex":0.0001532692,"about_ca_system_score_gemma":0.000004459588,"threshold_uncertainty_score":0.33880937},"labels":[],"label_agreement":null},{"id":"W2117664027","doi":"10.1128/aem.01821-08","title":"Antimicrobial Resistance in <i>Escherichia coli</i> Isolates from Swine and Wild Small Mammals in the Proximity of Swine Farms and in Natural Environments in Ontario, Canada","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":306,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; University of Guelph","funders":"","keywords":"Biology; Antimicrobial; Escherichia coli; Antibiotic resistance; Tetracycline; Livestock; Salmonella; Microbiology; Feces; Veterinary medicine; Bacteria; Antibiotics; Ecology; Gene","score_opus":0.008516133624456653,"score_gpt":0.17762914733165275,"score_spread":0.16911301370719609,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117664027","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984059,0.00050382776,0.0000013743637,0.00029731847,0.000028601224,0.0004719105,0.00006124565,0.0000022066395,0.00022762608],"genre_scores_gemma":[0.99758035,0.0007367915,0.0002791445,0.0012313691,0.0000065508593,0.000010464616,0.00007034148,0.000012817685,0.00007217192],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983754,0.00009258247,0.00043961918,0.00055277837,0.000076705604,0.00046287104],"domain_scores_gemma":[0.99958426,0.0000910543,0.000091783644,0.00015283129,1.5739607e-7,0.000079934274],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017789789,0.00028543372,0.00039857952,0.000042225234,0.000058591377,0.0000068480813,0.00017766195,0.00013113742,0.00009596361],"category_scores_gemma":[0.0000039469496,0.00023404718,0.000017845467,0.00009850235,0.0008930273,0.00009942553,0.00031182953,0.00045735788,0.0000036098218],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000110703455,0.00018074682,0.46320096,0.000006365106,0.0000040185455,0.000038933973,0.00055889675,0.000029367206,0.535726,0.0000022910942,0.000018888564,0.00012280961],"study_design_scores_gemma":[0.0019700653,0.00003268897,0.96981984,0.000030880165,0.000007268907,0.000031284326,0.00020854763,0.000029787796,0.026541803,0.00007413075,0.000995783,0.00025791678],"about_ca_topic_score_codex":0.35803583,"about_ca_topic_score_gemma":0.86027783,"teacher_disagreement_score":0.50918424,"about_ca_system_score_codex":0.00037897239,"about_ca_system_score_gemma":0.000015381342,"threshold_uncertainty_score":0.9544167},"labels":[],"label_agreement":null},{"id":"W2117686237","doi":"10.1128/aem.03936-13","title":"Genetic Diversity Analysis Reveals that Geographical Environment Plays a More Important Role than Rice Cultivar in Villosiclava virens Population Selection","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fundamental Research Funds for the Central Universities; University of Alberta","keywords":"Biology; Cultivar; Genetic diversity; Genetic distance; RAPD; Population; Fixation index; Genetic variation; Selection (genetic algorithm); Veterinary medicine; Fixation (population genetics); Botany; Genetics; Genetic structure; Gene","score_opus":0.002893542418844879,"score_gpt":0.16559266778106754,"score_spread":0.16269912536222267,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117686237","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986972,0.0003179887,0.00030250094,0.000014873851,0.000013731376,0.0001703107,0.00043920643,0.000007466297,0.000036693527],"genre_scores_gemma":[0.99671626,0.00062709267,0.00018937884,0.00015662394,0.000038897764,0.000017920847,0.0022315478,0.000010912371,0.000011343439],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989637,0.000063596046,0.00019609179,0.00046150017,0.000054209657,0.00026090624],"domain_scores_gemma":[0.9996446,0.000010999384,0.00009557801,0.00015933225,0.0000011045025,0.000088393346],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009160083,0.00019566946,0.00022951749,0.000092167116,0.00015221549,0.000007890954,0.00009030474,0.00020364081,0.000023144332],"category_scores_gemma":[0.0000022650959,0.00018594084,0.00009986237,0.0000667779,0.00011551242,0.0000038070962,0.00024473955,0.00008225593,0.0000052368723],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000398893,0.000072606075,0.46700373,0.0000026336338,0.00007089715,8.1231445e-7,0.00002298624,0.00014379692,0.532479,0.0000070273622,0.000006478641,0.00015017904],"study_design_scores_gemma":[0.00041008575,0.00010062796,0.9884374,0.0000017164866,0.00018676453,0.000021438862,0.00009608753,0.00018389494,0.009904362,0.000056797395,0.00037442028,0.0002263761],"about_ca_topic_score_codex":0.00012963089,"about_ca_topic_score_gemma":0.000063038766,"teacher_disagreement_score":0.5225746,"about_ca_system_score_codex":0.000027775422,"about_ca_system_score_gemma":0.0000018821885,"threshold_uncertainty_score":0.75824475},"labels":[],"label_agreement":null},{"id":"W2117687321","doi":"10.1128/aem.66.6.2336-2342.2000","title":"Biotransformation of Hydroxylaminobenzene and Aminophenol by <i>Pseudomonas putida</i> 2NP8 Cells Grown in the Presence of 3-Nitrophenol","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"","keywords":"Pseudomonas putida; Hydroquinone; Chemistry; Biotransformation; Imine; Catechol; Hydrolysis; Nitrophenol; Ammonia; Benzoquinone; Aniline; 4-Nitrophenol; Nitrobenzene; Biodegradation; Medicinal chemistry; Nuclear chemistry; Organic chemistry; Catalysis; Enzyme","score_opus":0.001549131348615012,"score_gpt":0.14378366395067857,"score_spread":0.14223453260206356,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117687321","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982703,0.0012060357,0.00004525243,0.000026139684,0.000019889285,0.00018034944,0.000079607205,0.0000021751753,0.00017027733],"genre_scores_gemma":[0.9976197,0.001958217,0.00012440066,0.00005643974,0.000022266642,0.000008121655,0.00016336769,0.0000065141858,0.000040967552],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994444,0.000028280854,0.00018730732,0.00019249995,0.000023974671,0.00012354154],"domain_scores_gemma":[0.99980414,0.000005134764,0.000044415476,0.00012894826,0.0000014282059,0.000015928794],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000938588,0.00010706502,0.00013138683,0.000020373172,0.000024786226,0.0000027303224,0.00008243118,0.000103909515,0.000014508935],"category_scores_gemma":[9.609903e-7,0.00008347162,0.000018804432,0.000034508714,0.00021208984,0.000003341787,0.00001976049,0.000057668585,0.0000014506854],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004038111,0.00006570694,0.00009436202,0.000023894752,0.000010948421,1.18894235e-7,0.0001720394,0.000042414176,0.9941017,0.000021274838,0.00008384637,0.0053433096],"study_design_scores_gemma":[0.0003986405,0.000117935226,0.0007171035,0.0000042641427,0.00001120012,0.000028792469,0.00014168088,0.000005168415,0.99186486,0.000014362614,0.0066077756,0.0000882158],"about_ca_topic_score_codex":0.000028916873,"about_ca_topic_score_gemma":0.0000018520334,"teacher_disagreement_score":0.006523929,"about_ca_system_score_codex":0.0000032066644,"about_ca_system_score_gemma":0.000002476546,"threshold_uncertainty_score":0.34038737},"labels":[],"label_agreement":null},{"id":"W2117715191","doi":"10.1128/aem.70.12.7342-7347.2004","title":"In Vivo <sup>31</sup> P Nuclear Magnetic Resonance Investigation of Tellurite Toxicity in <i>Escherichia coli</i>","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Trace Elements in Health","field":"Nursing","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Fondation pour la Recherche Médicale; University of Calgary","keywords":"Escherichia coli; Glycolysis; Intracellular; Nuclear magnetic resonance spectroscopy; Intracellular pH; Enterobacteriaceae; Plasmid; Transmembrane protein; Biochemistry; In vivo; Selenium; Chemistry; Biology; Biophysics; Metabolism; Stereochemistry; DNA; Gene; Organic chemistry","score_opus":0.005541133258743564,"score_gpt":0.19426406477406347,"score_spread":0.1887229315153199,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117715191","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99824584,0.0005357933,0.0000021024853,0.0004623024,0.000060933275,0.0004280126,0.000058828795,0.000013066902,0.00019310693],"genre_scores_gemma":[0.9960891,0.00014696502,0.0017722745,0.0018909018,0.000023480427,0.000017086733,0.000022812155,0.000021279902,0.00001610043],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988559,0.000053313746,0.00037956407,0.00034676676,0.000041956533,0.00032248063],"domain_scores_gemma":[0.9996725,0.00003886244,0.00008156368,0.0001541305,9.898096e-7,0.0000519562],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000147467,0.00015873442,0.00024324981,0.00007868052,0.00004562583,0.000004422842,0.000105477564,0.00016623674,0.00008128933],"category_scores_gemma":[0.0000033573028,0.00017629284,0.000018069568,0.00011044759,0.00039357672,0.00005695744,0.00006848604,0.00022418216,0.000021939568],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001301449,0.00013419332,0.015578016,0.000033133987,0.0000017352475,0.0000027477402,0.0017785674,0.0002632789,0.98065346,0.00022336736,0.00009909596,0.0011022822],"study_design_scores_gemma":[0.00795516,0.0010940484,0.24259791,0.0001474528,0.000023352604,0.000044575674,0.0020637163,0.00013152175,0.7121316,0.0035955992,0.029513504,0.0007015145],"about_ca_topic_score_codex":0.00021152786,"about_ca_topic_score_gemma":0.000091614165,"teacher_disagreement_score":0.2685218,"about_ca_system_score_codex":0.00022435836,"about_ca_system_score_gemma":0.000010057027,"threshold_uncertainty_score":0.71890134},"labels":[],"label_agreement":null},{"id":"W2117787596","doi":"10.1128/aem.02789-12","title":"Biological and Physicochemical Wastewater Treatment Processes Reduce the Prevalence of Virulent Escherichia coli","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":70,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"National Research Council Canada; McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Escherichia coli; Virulence; Microbiology; Wastewater; Biology; Sewage treatment; Chemistry; Biotechnology; Environmental science; Environmental engineering; Biochemistry","score_opus":0.012544379303182033,"score_gpt":0.22882313101373308,"score_spread":0.21627875171055105,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117787596","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99370533,0.0057512135,0.000003151717,0.000078597324,0.000019507244,0.000253042,0.00006212738,0.0000029265013,0.00012410493],"genre_scores_gemma":[0.9922478,0.007165947,0.00014695695,0.0000795735,0.000085991334,0.000087539906,0.000055974713,0.000008553276,0.00012165205],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992798,0.00003845943,0.00012374452,0.00025634447,0.000028028053,0.00027362062],"domain_scores_gemma":[0.99971,0.000032306023,0.00004898596,0.00014728392,0.0000034063564,0.000058010042],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000078903926,0.00015755388,0.00015304761,0.000008054785,0.000083008454,0.0000043089562,0.00008937574,0.00010035674,0.00001988149],"category_scores_gemma":[0.000010001659,0.00009274814,0.000026008649,0.000024210489,0.0008101911,0.0000028619186,0.00028438354,0.00005735578,0.000004168597],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007959523,0.00018131449,0.013568253,0.000049387007,0.000063914755,1.1627658e-7,0.00017806065,3.7621862e-7,0.98535657,0.00002257197,0.000053334035,0.00044649665],"study_design_scores_gemma":[0.00036695914,0.00033988396,0.020239264,0.000004205242,0.000027197604,0.000015266445,0.0002851588,7.92553e-7,0.9685821,0.000014147151,0.010000244,0.00012477658],"about_ca_topic_score_codex":0.0000031566146,"about_ca_topic_score_gemma":6.176075e-7,"teacher_disagreement_score":0.016774474,"about_ca_system_score_codex":0.00001367871,"about_ca_system_score_gemma":0.000010279416,"threshold_uncertainty_score":0.37821594},"labels":[],"label_agreement":null},{"id":"W2118162088","doi":"10.1128/aem.02306-07","title":"Differences in Carotenoid Composition among <i>Hymenobacter</i> and Related Strains Support a Tree-Like Model of Carotenoid Evolution","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant biochemistry and biosynthesis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Directorate for Biological Sciences; Natural Sciences and Engineering Research Council of Canada; Universität Wien; University of Alberta","keywords":"Carotenoid; Biology; Strain (injury); Pigment; High-performance liquid chromatography; 16S ribosomal RNA; Botany; Phylogenetics; Homogeneous; Bacteria; Chromatography; Chemistry; Gene; Biochemistry; Genetics; Organic chemistry","score_opus":0.0050599842345453675,"score_gpt":0.14943512167663764,"score_spread":0.14437513744209227,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118162088","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989076,0.0002036868,0.00004673793,0.000015631194,0.000015098608,0.00014822114,0.0003221196,0.000005171042,0.00033569403],"genre_scores_gemma":[0.99821824,0.00052559574,0.00010936833,0.000043340093,0.000012576001,0.000011914721,0.000974265,0.000008422697,0.00009626521],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999197,0.000025579679,0.00021493612,0.00034194475,0.000027989661,0.00019254201],"domain_scores_gemma":[0.99974716,0.000005289123,0.00008209354,0.000112346206,0.00000217515,0.000050925966],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000054242344,0.00016538161,0.00020935664,0.00003095684,0.00006738066,0.0000024938884,0.00006966204,0.0002622398,0.000008140267],"category_scores_gemma":[0.0000011321159,0.000154511,0.00003250014,0.000023988996,0.00053196476,0.000004186587,0.00008646824,0.00008615393,0.0000010544591],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006418081,0.000085790845,0.02353771,0.000013300724,0.000028310818,0.0000030856424,0.00009756504,0.000014061678,0.9759786,0.000010994487,0.000018197356,0.00014818057],"study_design_scores_gemma":[0.0007776346,0.00017691794,0.09461883,0.000009960558,0.0000245269,0.00024483708,0.00018414982,0.00013390117,0.90353,0.00003063384,0.000025572412,0.00024306259],"about_ca_topic_score_codex":0.000026716853,"about_ca_topic_score_gemma":0.000014019457,"teacher_disagreement_score":0.07244865,"about_ca_system_score_codex":0.000017862909,"about_ca_system_score_gemma":0.000013461161,"threshold_uncertainty_score":0.63007754},"labels":[],"label_agreement":null},{"id":"W2118510150","doi":"10.1128/aem.70.1.452-458.2004","title":"Phylogenetic Analysis of the Hypervariable Region of the 18S rRNA Gene of<i>Cryptosporidium</i>Oocysts in Feces of Canada Geese (<i>Branta canadensis</i>): Evidence for Five Novel Genotypes","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Oklahoma State University; U.S. Environmental Protection Agency","keywords":"Biology; Cryptosporidium; Phylogenetic tree; Hypervariable region; 18S ribosomal RNA; Genetic diversity; Genotype; Phylogenetics; Ribosomal RNA; Branta; Genetics; Goose; Zoology; Feces; Gene; Ecology; Population","score_opus":0.00875237786013299,"score_gpt":0.19008890986638063,"score_spread":0.18133653200624764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118510150","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99723595,0.001535623,0.00011340157,0.00006400552,0.00014622277,0.00031815763,0.00055470905,0.0000011155109,0.000030835785],"genre_scores_gemma":[0.9994309,0.00024500798,0.00012218728,0.00009427708,0.000005382802,0.000015196884,0.000050194332,0.00000616695,0.000030717292],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99914414,0.00004379151,0.00038256703,0.00020265335,0.000022583085,0.00020425294],"domain_scores_gemma":[0.9991136,0.00029199253,0.00029819465,0.00027004685,0.000014132149,0.0000119959495],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010973088,0.00012830968,0.00041578623,0.000063872656,0.000080472295,7.817106e-7,0.00019717253,0.00014657574,0.000013367955],"category_scores_gemma":[0.000036344452,0.0000881482,0.00009662742,0.00020488302,0.00059562485,0.0000112609005,0.00010296094,0.00008926001,2.3477457e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007740834,0.00010714441,0.042484768,0.000028498056,0.00034130813,2.770195e-7,0.00016978913,0.0042030606,0.9520922,0.0003957786,0.000041425148,0.000058347483],"study_design_scores_gemma":[0.0007567139,0.000062978135,0.23653677,0.000033551427,0.0004222246,0.000027843455,0.00019377985,0.0000045451748,0.761626,0.0000763255,0.00017369774,0.00008554787],"about_ca_topic_score_codex":0.10417497,"about_ca_topic_score_gemma":0.0798294,"teacher_disagreement_score":0.194052,"about_ca_system_score_codex":0.00008084905,"about_ca_system_score_gemma":0.00019018703,"threshold_uncertainty_score":0.9369613},"labels":[],"label_agreement":null},{"id":"W2118667220","doi":"10.1128/aem.02216-13","title":"Aerobic Biofilms Grown from Athabasca Watershed Sediments Are Inhibited by Increasing Concentrations of Bituminous Compounds","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Environment and Climate Change Canada; National Research Council Canada","funders":"","keywords":"Environmental chemistry; Biofilm; Cyanobacteria; Bacteroidetes; Biomass (ecology); Extracellular polymeric substance; Betaproteobacteria; Biology; Chemistry; Botany; Ecology; Bacteria; Actinobacteria","score_opus":0.00423548832657294,"score_gpt":0.15986205984821555,"score_spread":0.1556265715216426,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118667220","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983358,0.00007658265,0.000014432684,0.00013064466,0.00006811681,0.00039998945,0.00050247763,0.000024992176,0.00044699904],"genre_scores_gemma":[0.99648863,0.00008659311,0.00056243106,0.0006638,0.000017100314,0.000012612351,0.002083727,0.000015451595,0.00006966099],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987381,0.00006703796,0.0003551128,0.00043491187,0.00007440769,0.00033042845],"domain_scores_gemma":[0.999456,0.000045129593,0.00020085173,0.00017092793,0.0000018187982,0.00012530404],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007974719,0.00023549245,0.00027313203,0.000027640792,0.00012476306,0.000022580633,0.0001538441,0.00017763843,0.0036520127],"category_scores_gemma":[0.0000026413782,0.00020351601,0.00004238983,0.00007352714,0.00068596564,0.000108780565,0.0002190826,0.000111453024,0.00064785365],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017764512,0.00011668809,0.12882762,0.0000027074097,0.000022546634,5.5323846e-7,0.0001638866,0.0000013859146,0.86644423,0.0000022148824,0.0040107802,0.00038963108],"study_design_scores_gemma":[0.0010917039,0.000060795803,0.12763219,0.00000872129,0.000024742063,0.000014093273,0.00042020844,0.000025336447,0.8675059,0.00002992365,0.0028865915,0.0002998118],"about_ca_topic_score_codex":0.0014333625,"about_ca_topic_score_gemma":0.00003158566,"teacher_disagreement_score":0.003004159,"about_ca_system_score_codex":0.00009977401,"about_ca_system_score_gemma":0.0000033385536,"threshold_uncertainty_score":0.9972588},"labels":[],"label_agreement":null},{"id":"W2118805758","doi":"10.1128/aem.00739-09","title":"Rumen Microbiome Composition Determined Using Two Nutritional Models of Subacute Ruminal Acidosis","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":521,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; Dairy Farmers of Canada","keywords":"Rumen; Bacteroidetes; Prevotella; Biology; Microbiome; Firmicutes; Acidosis; Animal science; Microbiology; Streptococcus bovis; Food science; 16S ribosomal RNA; Bacteria; Endocrinology; Fermentation; Bioinformatics","score_opus":0.013540781419292327,"score_gpt":0.19935224967400564,"score_spread":0.1858114682547133,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118805758","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987206,0.0001826467,0.00003169475,0.00025526428,0.000024197865,0.0001742281,0.00042806115,0.0000156784,0.00016765094],"genre_scores_gemma":[0.9976478,0.00012560732,0.00061882084,0.00042251943,0.000059197264,0.000005838698,0.0011102618,0.000001122787,0.000008799964],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991576,0.00003882941,0.00022819638,0.00029978034,0.00003290928,0.00024266155],"domain_scores_gemma":[0.99974954,0.00004395728,0.000100443525,0.000040213345,0.000005112962,0.00006070286],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000048599708,0.00016338285,0.00025148396,0.00002299701,0.00013546107,0.0000085349875,0.000099593555,0.000107188156,0.00012645416],"category_scores_gemma":[3.76391e-7,0.00008721707,0.00006529927,0.0000646635,0.0002639874,0.00006592024,0.000052893996,0.00006818363,0.000009013357],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012518534,0.00026873074,0.00027331087,0.0000034155266,0.000009418687,0.000001572421,0.000017550348,0.000010751269,0.9923703,0.0005492162,0.000027071841,0.0063434616],"study_design_scores_gemma":[0.0019271082,0.0009824295,0.07970129,0.00002912827,0.00006052847,0.0004015463,0.0002391769,0.00031839302,0.9065773,0.007981245,0.0012309944,0.0005508603],"about_ca_topic_score_codex":0.000016391876,"about_ca_topic_score_gemma":0.0000019470922,"teacher_disagreement_score":0.08579302,"about_ca_system_score_codex":0.000029053594,"about_ca_system_score_gemma":0.0000021984026,"threshold_uncertainty_score":0.3556609},"labels":[],"label_agreement":null},{"id":"W2118817718","doi":"10.1128/aem.03439-12","title":"Patterns of Nucleotide Diversity of the <i>ldpA</i> Circadian Gene in Closely Related Species of Cyanobacteria from Extreme Cold Deserts","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Veterinärmedizinische Universität Wien; University of Hong Kong","keywords":"Biology; Nucleotide diversity; Cyanobacteria; Haplotype; Population; Synechococcus; Gene; Genetics; Genetic diversity; Gene pool; Evolutionary biology; Genotype","score_opus":0.010984259201047758,"score_gpt":0.165155738477845,"score_spread":0.15417147927679725,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118817718","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99868494,0.00007838553,0.0000027583924,0.000027013793,0.00005499873,0.00018663488,0.0003076014,0.0000024141912,0.00065526407],"genre_scores_gemma":[0.999579,0.00015343359,0.00008432375,0.000060921622,0.0000073566484,0.0000029408407,0.000048932765,0.0000069290704,0.000056140645],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991328,0.00007268328,0.00024463006,0.00018124784,0.00005721391,0.00031140682],"domain_scores_gemma":[0.9995544,0.00005022756,0.00013457451,0.00019101462,5.811867e-7,0.00006919304],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00014458995,0.000107664186,0.00023306052,0.000026048916,0.00006069797,0.0000012231499,0.00024137886,0.000117397816,0.0015317771],"category_scores_gemma":[0.000004155721,0.00008746458,0.000045264118,0.000054041644,0.00058203103,0.000056256424,0.00094966363,0.00011089521,0.000034126373],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016854614,0.00008678374,0.48776022,0.000003013899,0.000010888482,3.7067028e-7,0.00033095398,0.0000023167458,0.51166767,0.000028509496,0.000018793122,0.00007362974],"study_design_scores_gemma":[0.00032447503,0.000027497372,0.6642396,0.0000034631912,0.00000774615,0.0000025472166,0.00014844249,8.024684e-7,0.3347645,0.000053070176,0.00037321914,0.00005464721],"about_ca_topic_score_codex":0.001256053,"about_ca_topic_score_gemma":0.00037277633,"teacher_disagreement_score":0.17690317,"about_ca_system_score_codex":0.00008484864,"about_ca_system_score_gemma":0.000003414221,"threshold_uncertainty_score":0.99938095},"labels":[],"label_agreement":null},{"id":"W2118831429","doi":"10.1128/aem.01510-09","title":"Improvement of the Representation of Bifidobacteria in Fecal Microbiota Metagenomic Libraries by Application of the<i>cpn60</i>Universal Primer Cocktail","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Saskatchewan Pulse Growers","keywords":"Metagenomics; Actinobacteria; Biology; 16S ribosomal RNA; Primer (cosmetics); Feces; Microbiome; Firmicutes; Microbiology; Computational biology; Bacteria; Genetics; Gene; Chemistry","score_opus":0.0020946098863164533,"score_gpt":0.1735702925643724,"score_spread":0.17147568267805594,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118831429","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989805,0.00013935128,0.000032417116,0.000080342295,0.00008002633,0.00039346627,0.00023346365,0.0000012024404,0.00005920829],"genre_scores_gemma":[0.99932677,0.00008731602,0.00015341611,0.00009610537,0.000013475362,0.000009166737,0.00024406162,0.000009497329,0.000060172268],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992957,0.000032264565,0.00027963045,0.00023848488,0.000022604414,0.00013133272],"domain_scores_gemma":[0.9994095,0.0000098112405,0.00024244167,0.00031548983,0.0000039136557,0.00001882518],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007192144,0.000110182766,0.00018006885,0.000019805813,0.00004027069,0.0000023787766,0.0002029427,0.00016040802,0.000016088412],"category_scores_gemma":[0.0000023632638,0.0000787702,0.000057545625,0.00005059648,0.00055075885,0.0000034217508,0.00026324886,0.00010388794,8.286526e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006056713,0.00010142709,0.021627907,0.000021743272,0.00002581892,1.5880033e-8,0.00008254231,0.000001985785,0.97719425,0.00012806559,0.00015994448,0.00059572747],"study_design_scores_gemma":[0.00053743285,0.000057016878,0.064094245,0.0000029010437,0.000017510618,0.000004632741,0.00012698348,0.0000011346741,0.93119496,0.000023218416,0.0038722337,0.000067718356],"about_ca_topic_score_codex":0.0001251546,"about_ca_topic_score_gemma":0.00005430756,"teacher_disagreement_score":0.04599928,"about_ca_system_score_codex":0.000010301825,"about_ca_system_score_gemma":0.000026997506,"threshold_uncertainty_score":0.32121554},"labels":[],"label_agreement":null},{"id":"W2118999389","doi":"10.1128/aem.01672-08","title":"Long-Term Monensin Supplementation Does Not Significantly Affect the Quantity or Diversity of Methanogens in the Rumen of the Lactating Dairy Cow","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":161,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Monensin; Rumen; Biology; Temperature gradient gel electrophoresis; Phylotype; Animal science; 16S ribosomal RNA; Methanogen; Fibrobacter succinogenes; Total mixed ration; Population; Microbiology; Food science; Bacteria; Lactation; Fermentation","score_opus":0.025550059492576962,"score_gpt":0.21446694693316015,"score_spread":0.1889168874405832,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118999389","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99890095,0.000028218294,0.0000011436872,0.00045827488,0.000026926293,0.0003057625,0.00024059959,0.000002715778,0.000035438406],"genre_scores_gemma":[0.9993625,0.00020495882,0.000012643821,0.00027258557,0.000015971133,0.000008171688,0.00010597033,5.82031e-7,0.00001656988],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99931073,0.00018874684,0.00015808427,0.00016099207,0.00004704821,0.00013438382],"domain_scores_gemma":[0.9994393,0.00036719738,0.00012366934,0.0000549438,0.0000026914845,0.00001220174],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001596875,0.00008945798,0.00015185207,0.0000065327094,0.00028680556,0.0000026700368,0.00019158231,0.00005276644,0.00009153444],"category_scores_gemma":[0.0000057674306,0.000022877779,0.000047347825,0.00007071635,0.00061155733,0.000021882823,0.00019691592,0.000077848534,0.0000018737594],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009152956,0.0000891694,0.2217748,0.0000042862207,0.000007765667,8.5711645e-7,0.00045320467,8.9227433e-7,0.7769745,0.000050413022,0.000027848402,0.000524743],"study_design_scores_gemma":[0.00022825302,0.000119559525,0.81093997,0.0000029940552,0.0000107132455,0.00001294531,0.0017728911,8.802349e-7,0.18679427,0.000043206277,0.00002609318,0.00004825479],"about_ca_topic_score_codex":0.00024256887,"about_ca_topic_score_gemma":0.0005954665,"teacher_disagreement_score":0.5901802,"about_ca_system_score_codex":0.000010529227,"about_ca_system_score_gemma":0.000002264353,"threshold_uncertainty_score":0.22533084},"labels":[],"label_agreement":null},{"id":"W2119066916","doi":"10.1128/aem.71.12.8419-8425.2005","title":"Ecological Behavior of<i>Lactobacillus reuteri</i>100-23 Is Affected by Mutation of the<i>luxS</i>Gene","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":106,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Mutant; Complementation; Lactobacillus reuteri; Biofilm; Microbiology; Wild type; Biology; Mutation; Plasmid; Mutagenesis; Biochemistry; Gene; Bacteria; Genetics; Lactobacillus; Fermentation","score_opus":0.003525470580926932,"score_gpt":0.17855706832921636,"score_spread":0.17503159774828944,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119066916","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989525,0.00023351898,0.0000115369,0.00008161053,0.00006976183,0.0002039602,0.00036153477,0.000003645101,0.0000819184],"genre_scores_gemma":[0.9982121,0.00016202206,0.00038659747,0.0004489964,0.000048144382,0.000008446313,0.00063659105,0.000010796789,0.000086327855],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99929553,0.000034382538,0.00021528584,0.00026080667,0.000026478545,0.00016751545],"domain_scores_gemma":[0.9996494,0.0000068204663,0.00012998078,0.00017814648,0.0000035411017,0.00003210242],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005004816,0.00013796038,0.00017695119,0.000012199098,0.00005164364,0.0000033766908,0.00009225029,0.00023029008,0.0000424947],"category_scores_gemma":[0.0000022779973,0.00010554327,0.0000622472,0.000025853313,0.00032732871,0.0000022649676,0.00014830244,0.000060125294,0.0000053843773],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000044217188,0.00015581747,0.0009902067,0.0000045824577,0.000023483886,3.0587975e-7,0.00003232786,0.0000012031736,0.995963,0.0000066373186,0.00042473344,0.0023535027],"study_design_scores_gemma":[0.0004989542,0.00018423954,0.017104506,0.0000022212519,0.00003023934,0.000048142152,0.000032530228,0.0000011298324,0.97124946,0.000002097402,0.010730404,0.000116089745],"about_ca_topic_score_codex":0.0000069643406,"about_ca_topic_score_gemma":0.000004933359,"teacher_disagreement_score":0.024713537,"about_ca_system_score_codex":0.000012299661,"about_ca_system_score_gemma":0.0000068105073,"threshold_uncertainty_score":0.43039295},"labels":[],"label_agreement":null},{"id":"W2119155036","doi":"10.1128/aem.01427-10","title":"Response of Nursery Pigs to a Synbiotic Preparation of Starch and an Anti-<i>Escherichia coli</i>K88 Probiotic","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"University of Manitoba","keywords":"Probiotic; Biology; Escherichia coli; Enterotoxigenic Escherichia coli; Microbiology; Antibiotics; Food science; Prebiotic; Diarrhea; Pathogenic Escherichia coli; Bacteria; Medicine; Enterotoxin; Gene; Biochemistry","score_opus":0.004229221286975327,"score_gpt":0.2367562151257156,"score_spread":0.23252699383874026,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119155036","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99910796,0.00009862995,0.000033536806,0.00006631449,0.000054523043,0.0004465708,0.0001577973,0.0000043452637,0.000030336112],"genre_scores_gemma":[0.99774766,0.00007440525,0.0015720435,0.00026558127,0.000026655463,0.000010071259,0.0002537471,0.000016023718,0.000033801472],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999085,0.000067058136,0.00024471007,0.00036818458,0.000024117642,0.0002109454],"domain_scores_gemma":[0.9995348,0.000017640754,0.000095155185,0.0002474442,0.000006504757,0.00009846266],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021694292,0.00015071854,0.00022995379,0.000048260696,0.00005429849,0.00000517013,0.00009539316,0.00021383709,0.000017330382],"category_scores_gemma":[0.0000075303547,0.00014508808,0.000024576528,0.000038084654,0.00036637092,0.000003943126,0.000113593866,0.00010227742,0.00000339213],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009379256,0.00016183639,0.004720456,0.000041216117,0.000021647213,3.5723426e-7,0.00027297056,0.000004587873,0.9935701,0.0000534884,0.0000686586,0.00014677332],"study_design_scores_gemma":[0.00060326944,0.0014401132,0.10065222,0.000007657461,0.000019764413,0.0000361504,0.00022137577,0.000003524395,0.8946809,0.000011383378,0.002156945,0.00016668462],"about_ca_topic_score_codex":0.000016979928,"about_ca_topic_score_gemma":0.000026052254,"teacher_disagreement_score":0.098889165,"about_ca_system_score_codex":0.000007482686,"about_ca_system_score_gemma":0.000036726546,"threshold_uncertainty_score":0.59165204},"labels":[],"label_agreement":null},{"id":"W2119219318","doi":"10.1128/aem.69.8.4994-4996.2003","title":"Internal and External Mycoflora of the American Dog Tick, <i>Dermacentor variabilis</i> (Acari: Ixodidae), and Its Ecological Implications","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Alberta","keywords":"Dermacentor variabilis; Acari; Biology; Ixodidae; Dermacentor; Tick; Ecology; Zoology","score_opus":0.004569428540885007,"score_gpt":0.1945018413352154,"score_spread":0.18993241279433037,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119219318","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99674267,0.002042737,0.000033180262,0.00010611928,0.00012951905,0.00029567038,0.00020756751,0.000017610493,0.00042491299],"genre_scores_gemma":[0.9986264,0.00059190963,0.000043000684,0.00055220554,0.00001289289,0.00003989525,0.000042090203,0.0000125000915,0.000079106496],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99890465,0.00016696219,0.0002434855,0.00039084544,0.0000123551845,0.00028170145],"domain_scores_gemma":[0.9994459,0.00016031635,0.00016693171,0.0001775367,0.0000043834402,0.000044908953],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009527963,0.00020088036,0.00029978048,0.000034836816,0.00018051713,0.000009236986,0.0001255712,0.00013909875,0.00019060186],"category_scores_gemma":[0.000020089534,0.00014716559,0.00004850865,0.00004786424,0.0013016604,0.000027247837,0.00023023043,0.00021568217,0.000023711556],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029510928,0.00016598451,0.12897806,0.000007637069,0.000076845114,4.8915865e-7,0.0000755441,0.0000011135987,0.8668918,0.002850829,0.00011203847,0.0008101526],"study_design_scores_gemma":[0.0013706664,0.00023525351,0.8461323,0.000008849317,0.00013505992,0.0008656647,0.00025213993,0.0000012453021,0.13912113,0.0006887208,0.010919941,0.00026903715],"about_ca_topic_score_codex":0.00002761791,"about_ca_topic_score_gemma":0.000006903384,"teacher_disagreement_score":0.7277707,"about_ca_system_score_codex":0.00003614111,"about_ca_system_score_gemma":0.000014094927,"threshold_uncertainty_score":0.6001238},"labels":[],"label_agreement":null},{"id":"W2119253330","doi":"10.1128/aem.05261-11","title":"Bacterial Whole-Cell Biosensor for Glutamine with Applications for Quantifying and Visualizing Glutamine in Plants","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Ontario Ministry of Agriculture, Food and Rural Affairs","keywords":"Glutamine; Biosensor; Escherichia coli; Auxotrophy; Biochemistry; Biology; Reporter gene; Bacteria; Chromatography; Chemistry; Gene; Amino acid; Gene expression; Genetics","score_opus":0.012877029263550659,"score_gpt":0.20212988995498835,"score_spread":0.18925286069143768,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119253330","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955058,0.00038302026,0.0031393303,0.000011260909,0.00004680004,0.000639347,0.0002491148,0.000007364113,0.000017943597],"genre_scores_gemma":[0.99242073,0.00021212976,0.0058830106,0.00004323317,0.00013594801,0.00017665069,0.0010514455,0.000020716987,0.000056112753],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99929184,0.000006995088,0.00013654747,0.00036145037,0.000009708525,0.00019346959],"domain_scores_gemma":[0.9998099,0.0000058097676,0.000047320173,0.00010135424,0.0000023766095,0.000033222288],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006901432,0.0001368664,0.0001486716,0.000036282687,0.000058399968,0.0000057697894,0.000044059925,0.00011948725,0.0000020739383],"category_scores_gemma":[0.0000015702834,0.00012452726,0.000017864108,0.000017908056,0.00010444193,0.0000026551807,0.00003903477,0.000035987792,0.000001096388],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025714387,0.000074487856,0.0003991998,0.000043448952,0.000016409927,1.398546e-7,0.000064140666,0.0000022344034,0.9967052,0.000051088406,0.000017920851,0.0023686087],"study_design_scores_gemma":[0.0017132317,0.0003088074,0.0018823191,0.0000059681765,0.000020194515,0.00004741337,0.00017751347,0.0000063733655,0.9548911,0.000010059807,0.040731315,0.00020570794],"about_ca_topic_score_codex":0.0000067185656,"about_ca_topic_score_gemma":0.000011492836,"teacher_disagreement_score":0.04181408,"about_ca_system_score_codex":0.0000066028333,"about_ca_system_score_gemma":0.0000040526884,"threshold_uncertainty_score":0.50780743},"labels":[],"label_agreement":null},{"id":"W2119329461","doi":"10.1128/aem.00419-08","title":"Competitive Oxidation of Volatile Fatty Acids by Sulfate- and Nitrate-Reducing Bacteria from an Oil Field in Argentina","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mine drainage and remediation techniques","field":"Environmental Science","cited_by":100,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; ConocoPhillips; Saudi Aramco; Shell Canada; Yara International; Suncor Energy Incorporated","keywords":"Nitrate; Propionate; Nitrite; Chemistry; Sulfate; Sulfate-reducing bacteria; Desulfovibrio; Sulfide; Food science; Environmental chemistry; Butyrate; Fermentation; Inorganic chemistry; Biochemistry; Organic chemistry","score_opus":0.004399953198443132,"score_gpt":0.18295353216201102,"score_spread":0.17855357896356788,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119329461","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985943,0.000054887052,0.00007974653,0.000034203313,0.000018383224,0.00007956256,0.0000803005,0.000010846355,0.0010477778],"genre_scores_gemma":[0.9979103,0.00039758038,0.0008214048,0.00013589686,0.000011104621,0.000011362249,0.0006438835,0.0000069214434,0.0000615081],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993482,0.000032380904,0.00018389944,0.0002706953,0.000029809804,0.00013501331],"domain_scores_gemma":[0.9997618,0.000031976473,0.0000730201,0.000090916896,5.3873686e-7,0.000041742456],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000057418252,0.000111611094,0.00015374609,0.000023032522,0.00006002606,0.0000038380604,0.00006170665,0.00010641662,0.0008832466],"category_scores_gemma":[0.0000019556815,0.00010485226,0.0000124586595,0.00003207008,0.00027622227,0.00008385505,0.00009627848,0.00007611175,0.000012462226],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022097029,0.000072100396,0.036477212,0.0000027016426,0.000004132042,0.000001292237,0.0005324381,0.0000011957529,0.9609427,0.000021093974,0.00012858147,0.001794474],"study_design_scores_gemma":[0.00036201233,0.00008322333,0.07118036,0.0000044570193,0.0000049519235,0.000009325319,0.0002934399,0.000018208782,0.92656475,0.00008615368,0.0012651007,0.00012799814],"about_ca_topic_score_codex":0.00043164616,"about_ca_topic_score_gemma":0.00004398831,"teacher_disagreement_score":0.03470315,"about_ca_system_score_codex":0.000026764572,"about_ca_system_score_gemma":0.0000017898102,"threshold_uncertainty_score":0.96709305},"labels":[],"label_agreement":null},{"id":"W2119492451","doi":"10.1128/aem.01508-07","title":"Identification of <i>Campylobacter jejuni</i> Genes Contributing to Acid Adaptation by Transcriptional Profiling and Genome-Wide Mutagenesis","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Campylobacter jejuni; Biology; Transposon mutagenesis; Gene; Mutant; Transcriptome; Flagellin; Gene expression profiling; Biochemistry; Microbiology; Transposable element; Genetics; Gene expression; Bacteria","score_opus":0.009896422065758071,"score_gpt":0.16806242084628034,"score_spread":0.15816599878052226,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119492451","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99770784,0.0011273582,0.00024699597,0.00021193549,0.000035071807,0.00023928267,0.0003968505,0.0000144151945,0.000020272615],"genre_scores_gemma":[0.9975837,0.0006485946,0.00016232196,0.00052113796,0.000040372022,0.00002633445,0.000985765,0.0000016692419,0.000030117075],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989941,0.000057182868,0.000314842,0.00033899656,0.0000339491,0.0002609178],"domain_scores_gemma":[0.9996725,0.000102225036,0.00011047957,0.000039447972,0.000005595359,0.00006978739],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001842632,0.00013656693,0.00022173676,0.000012576567,0.00019506083,0.0000059076588,0.00007761974,0.00012188407,0.000047220718],"category_scores_gemma":[0.0000065503177,0.00007393587,0.000034009885,0.00005189226,0.00019735491,0.00003650369,0.00005835652,0.00005284714,0.000010631624],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003776809,0.000041999647,0.05448639,0.0000036989188,0.000014578896,4.6233316e-7,0.00011364574,0.0000060079915,0.9409577,0.000035201272,0.000013647384,0.004288904],"study_design_scores_gemma":[0.00030087307,0.00015921076,0.5730396,0.0000026945017,0.00002237531,0.00006963921,0.0007102627,0.0000108190225,0.4205645,0.00008555365,0.0048107943,0.00022365566],"about_ca_topic_score_codex":0.00001976432,"about_ca_topic_score_gemma":0.000006719189,"teacher_disagreement_score":0.5203932,"about_ca_system_score_codex":0.000017622107,"about_ca_system_score_gemma":0.0000020994173,"threshold_uncertainty_score":0.30150175},"labels":[],"label_agreement":null},{"id":"W2119578504","doi":"10.1128/aem.67.4.1503-1507.2001","title":"Identification of Fecal <i>Escherichia coli</i> from Humans and Animals by Ribotyping","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fecal contamination and water quality","field":"Environmental Science","cited_by":225,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"U.S. Army Corps of Engineers; Health Canada; University of Florida","keywords":"Feces; Ribotyping; Escherichia coli; Fecal coliform; Biology; Identification (biology); Microbiology; Host (biology); Ecology; Water quality; Polymerase chain reaction; Genetics","score_opus":0.005948126900614994,"score_gpt":0.19231912537712267,"score_spread":0.18637099847650768,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119578504","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99838006,0.00018643968,0.00040787968,0.00009465463,0.000022940067,0.0001358603,0.00011643651,0.000011124273,0.000644577],"genre_scores_gemma":[0.9990486,0.00017371643,0.000105313906,0.00035128187,0.000009135882,0.000009429915,0.00015039138,0.000007384952,0.00014477626],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992382,0.000042680625,0.00023280112,0.00030336145,0.000038522936,0.0001444585],"domain_scores_gemma":[0.99972415,0.000031528303,0.00008855481,0.00010371733,4.9868305e-7,0.0000515354],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012778665,0.000110614215,0.00014823226,0.000010333803,0.000084559346,0.000009986023,0.000074053576,0.0000882651,0.0004766731],"category_scores_gemma":[0.0000017947698,0.0001053323,0.000017029492,0.000031293013,0.0004300097,0.00004514747,0.00012975276,0.000066236535,0.0000681663],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020385825,0.000048959457,0.032425843,0.0000022480265,0.000007534423,3.6855857e-7,0.00020279757,0.0000015151013,0.9645502,0.00011560646,0.00022374919,0.0024007831],"study_design_scores_gemma":[0.0010224425,0.00009367888,0.48743397,0.0000044870662,0.000031593197,0.000007816637,0.00047644664,0.000082520266,0.485206,0.00088886573,0.024426285,0.0003258778],"about_ca_topic_score_codex":0.00014500994,"about_ca_topic_score_gemma":0.000016211708,"teacher_disagreement_score":0.47934422,"about_ca_system_score_codex":0.000034886605,"about_ca_system_score_gemma":7.901307e-7,"threshold_uncertainty_score":0.5219236},"labels":[],"label_agreement":null},{"id":"W2119582961","doi":"10.1128/aem.00176-08","title":"Cyclic-di-GMP Regulates Extracellular Polysaccharide Production, Biofilm Formation, and Rugose Colony Development by <i>Vibrio vulnificus</i>","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":98,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; University of Toronto","funders":"","keywords":"Biofilm; Extracellular polysaccharide; Vibrio vulnificus; Microbiology; Extracellular; Biology; Bacteria; Polysaccharide; Vibrio; Vibrionaceae; Extracellular polymeric substance; Chemistry; Biochemistry; Genetics","score_opus":0.005361536982115525,"score_gpt":0.17538281592127317,"score_spread":0.17002127893915764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119582961","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99518085,0.0039863572,0.00007975325,0.00021539883,0.000052703363,0.00034256725,0.00007158563,0.00001588111,0.00005490403],"genre_scores_gemma":[0.9933439,0.0038588138,0.0005451774,0.00013837444,0.00006873204,0.00007234039,0.00094439223,0.000021401353,0.001006859],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987939,0.00003525414,0.00025911295,0.0005107943,0.000049589096,0.00035135745],"domain_scores_gemma":[0.99961436,0.000008666237,0.000084418454,0.00019409094,0.0000066484986,0.00009182606],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010775197,0.0002324324,0.00020138253,0.00003714301,0.00037469002,0.000014337759,0.0000978978,0.00016315412,0.000017319288],"category_scores_gemma":[0.000008182568,0.00021577733,0.000024911604,0.000034826928,0.00060572865,0.000010318455,0.00027946578,0.00009143401,0.00001974818],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006563758,0.000070305774,0.002417694,0.000016351354,0.00006213142,0.0000021794744,0.0002660862,0.0000016173593,0.9906289,0.000006531494,0.005521306,0.0009412758],"study_design_scores_gemma":[0.00045696707,0.000088638015,0.005283116,0.0000034955158,0.000008916164,0.00026670095,0.00019169545,0.0000010498156,0.8592522,0.000008010168,0.13420948,0.0002297247],"about_ca_topic_score_codex":0.0000086050895,"about_ca_topic_score_gemma":0.0000072873877,"teacher_disagreement_score":0.13137668,"about_ca_system_score_codex":0.000032241514,"about_ca_system_score_gemma":0.000018963678,"threshold_uncertainty_score":0.8799144},"labels":[],"label_agreement":null},{"id":"W2119884852","doi":"10.1128/aem.68.12.6246-6255.2002","title":"Aerobic Metabolism of 4-Hydroxybenzoic Acid in Archaea via an Unusual Pathway Involving an Intramolecular Migration (NIH Shift)","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Archaea; Intramolecular force; Metabolism; Chemistry; Biochemistry; Biology; Stereochemistry; Gene","score_opus":0.004241544951664814,"score_gpt":0.1642880912098785,"score_spread":0.16004654625821368,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119884852","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963567,0.0026419812,0.0006518907,0.000022013846,0.00009396733,0.00018099279,0.000019695735,0.000011297267,0.000021458582],"genre_scores_gemma":[0.99759597,0.0006885819,0.00070279336,0.00009913436,0.00014574495,0.000016749247,0.0007125794,0.00002385573,0.000014596227],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988968,0.00006795789,0.0002663329,0.00047912265,0.00003356395,0.0002562515],"domain_scores_gemma":[0.9995833,0.0000019854338,0.00007595468,0.00026497932,0.0000030962622,0.000070697766],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001338075,0.00020842576,0.00023106387,0.00008291317,0.00004444889,0.000007270343,0.00012020062,0.00022491111,0.00002648917],"category_scores_gemma":[0.0000037316852,0.00020636807,0.00003860563,0.000063022926,0.00019045376,0.000010773959,0.00007429326,0.00012182005,0.000005177873],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025886535,0.00018627428,0.00028642185,0.0000106120715,0.000020365995,0.0000011534496,0.00036462495,0.00013817505,0.99327016,0.00011128842,0.000004595121,0.005580458],"study_design_scores_gemma":[0.0005502713,0.00023676439,0.002862766,0.0000041300045,0.000016035812,0.0000481906,0.00012866876,0.00016958191,0.9932701,0.00006347839,0.0024066016,0.00024338438],"about_ca_topic_score_codex":0.00004754863,"about_ca_topic_score_gemma":0.000111348425,"teacher_disagreement_score":0.0053370735,"about_ca_system_score_codex":0.0000140773855,"about_ca_system_score_gemma":0.000004125939,"threshold_uncertainty_score":0.8415446},"labels":[],"label_agreement":null},{"id":"W2119998263","doi":"10.1128/aem.01952-09","title":"Isolation and Characterization of Bacteria Resistant to Metallic Copper Surfaces","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":169,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Alberta; International Copper Association; Copper Development Association","keywords":"Copper; Microbiology; Bacteria; Escherichia coli; Biology; Strain (injury); Chemistry; Biochemistry; Gene","score_opus":0.0032735082183927167,"score_gpt":0.1728653764780984,"score_spread":0.16959186825970568,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119998263","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995304,0.000024689787,0.000011543206,0.000064937,0.00008753086,0.000119047836,0.00010808719,0.0000022896754,0.00005148775],"genre_scores_gemma":[0.99777627,0.00009238589,0.0011682886,0.0001320072,0.000046569094,0.0000026856492,0.0007318412,0.00000927408,0.00004068895],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995152,0.000012661382,0.00012843867,0.00022206525,0.000012561263,0.00010906915],"domain_scores_gemma":[0.9997992,0.0000036358474,0.000053022635,0.00009970187,0.0000025289544,0.000041932617],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005648593,0.000095778414,0.000115650284,0.00001870629,0.000042739564,0.000008565595,0.000031352014,0.00012829016,0.000029297204],"category_scores_gemma":[0.0000018860289,0.00008742049,0.000013931447,0.0000145268905,0.00011915165,0.0000027703709,0.00008234774,0.000040660423,0.000003984893],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009120755,0.000015782756,0.000909149,0.0000043323344,0.000014008515,1.0039748e-7,0.000035769328,1.1097462e-7,0.9976894,0.00004732343,0.000007533071,0.001185281],"study_design_scores_gemma":[0.00019353603,0.00011266597,0.05397968,0.000001761699,0.000009666056,0.000012902354,0.000027662036,0.0000012311908,0.9312254,0.0000033098559,0.014331268,0.00010087832],"about_ca_topic_score_codex":0.0000051644615,"about_ca_topic_score_gemma":0.0000115438,"teacher_disagreement_score":0.06646396,"about_ca_system_score_codex":0.0000022399672,"about_ca_system_score_gemma":0.0000036234005,"threshold_uncertainty_score":0.35649043},"labels":[],"label_agreement":null},{"id":"W2120009957","doi":"10.1128/aem.70.9.5603-5612.2004","title":"Cloning and Characterization of the Bile Salt Hydrolase Genes ( <i>bsh</i> ) from <i>Bifidobacterium bifidum</i> Strains","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":105,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Bifidobacterium bifidum; Bifidobacterium longum; Biology; Biochemistry; Gene; Homology (biology); Bifidobacterium; Sequence analysis; Molecular cloning; Molecular biology; Peptide sequence; Lactobacillus","score_opus":0.0029083575898792595,"score_gpt":0.1485277922526888,"score_spread":0.14561943466280955,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120009957","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987902,0.00011849781,0.00012643466,0.00007455302,0.00022767512,0.00013924386,0.00044455047,0.0000141685305,0.00006468607],"genre_scores_gemma":[0.9988795,0.00013405734,0.00021182733,0.00038249473,0.00007507429,0.000007817515,0.00028458473,0.000010311488,0.000014314688],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99937165,0.000022682174,0.00016605112,0.00026348056,0.000029839155,0.00014629739],"domain_scores_gemma":[0.99971145,0.000012110544,0.000103872015,0.00013946959,0.000001467255,0.000031607513],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000050014027,0.00012381855,0.00014569772,0.00001628941,0.00011562281,0.000014092961,0.0000768921,0.00009877956,0.00007894225],"category_scores_gemma":[8.9424316e-7,0.00008858785,0.000021233966,0.000028730423,0.00031137996,0.000053229207,0.00010732056,0.000064056425,0.00001055567],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016975519,0.000019445662,0.0011900209,0.0000060143634,0.0000060317693,3.2239396e-7,0.00021980544,0.00001047564,0.9978674,0.00010199623,0.0000037857603,0.00055771664],"study_design_scores_gemma":[0.00045117366,0.000038068883,0.02806253,0.000006703678,0.000018861772,0.000020512474,0.00007704444,0.0000013621484,0.9696091,0.00027294096,0.0013419068,0.00009979305],"about_ca_topic_score_codex":0.00005195608,"about_ca_topic_score_gemma":0.000011992603,"teacher_disagreement_score":0.028258307,"about_ca_system_score_codex":0.000018917992,"about_ca_system_score_gemma":0.000007410025,"threshold_uncertainty_score":0.36125076},"labels":[],"label_agreement":null},{"id":"W2120359685","doi":"10.1128/aem.01391-10","title":"Detection of Airborne Lactococcal Bacteriophages in Cheese Manufacturing Plants","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":103,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec","funders":"National Institute for Occupational Safety and Health; Agriculture and Agri-Food Canada; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation; Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies; Novalait","keywords":"Bioaerosol; Lactococcus lactis; Starter; Microbiology; Bacteriophage; Bacteria; Virulence; Biology; Phage typing; Air filter; Food science; Membrane filter; Typing; Chemistry; Aerosol; Gene","score_opus":0.002882071942156202,"score_gpt":0.17645518128302498,"score_spread":0.17357310934086878,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120359685","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987024,0.000009234842,0.000009346685,0.00002032609,0.00013742391,0.00017746908,0.00005040453,0.00001132676,0.00088205514],"genre_scores_gemma":[0.99954784,0.000047780668,0.00015948155,0.00006662483,0.000022786928,0.000017353535,0.000047279584,0.000011783396,0.00007908518],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992582,0.000014635259,0.00020559189,0.00027798396,0.000022053408,0.00022154197],"domain_scores_gemma":[0.99972427,0.000018675175,0.000072580166,0.0001337734,2.4779385e-7,0.000050426646],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00006531053,0.0001418174,0.00016826736,0.00004021931,0.000052945605,0.000007217458,0.000094787174,0.00014394046,0.0017463686],"category_scores_gemma":[0.0000012694472,0.00013323333,0.00003019024,0.000024214458,0.00030326904,0.00007681339,0.00017350505,0.00026173133,0.00012886987],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000346349,0.00008404258,0.0020678448,0.0000038822873,0.0000055320115,0.0000029568548,0.00012396195,0.000004866913,0.97671914,0.0000028975753,0.000008078628,0.02094215],"study_design_scores_gemma":[0.00025327416,0.000024806566,0.4530177,0.000001981468,0.0000030007807,0.0000659239,0.00006436263,0.000003132353,0.54282856,0.000013536593,0.003640012,0.000083700004],"about_ca_topic_score_codex":0.0001822995,"about_ca_topic_score_gemma":0.0005072766,"teacher_disagreement_score":0.45094988,"about_ca_system_score_codex":0.000040530762,"about_ca_system_score_gemma":0.0000012377737,"threshold_uncertainty_score":0.9991662},"labels":[],"label_agreement":null},{"id":"W2120477293","doi":"10.1128/aem.02626-10","title":"Significant Shift in Median Guinea Pig Infectious Dose Shown by an Outbreak-Associated<i>Listeria monocytogenes</i>Epidemic Clone Strain and a Strain Carrying a Premature Stop Codon Mutation in<i>inlA</i>","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"Cooperative State Research, Education, and Extension Service; University of Georgia; U.S. Department of Agriculture","keywords":"Listeria monocytogenes; Outbreak; Biology; Strain (injury); Virulence; clone (Java method); Microbiology; Spleen; Virology; Immunology; Genetics; Bacteria; Gene","score_opus":0.024142925893014058,"score_gpt":0.238414766896779,"score_spread":0.21427184100376495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120477293","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99720705,0.00053363404,0.000089989626,0.00004259115,0.00010055942,0.000586574,0.0012662032,0.000017488199,0.00015589944],"genre_scores_gemma":[0.9950194,0.00038980332,0.00024742898,0.0005661001,0.00004851461,0.000093936236,0.0035764985,0.00004612517,0.000012215459],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980065,0.00019939088,0.0004813415,0.0007963096,0.000047291815,0.0004691256],"domain_scores_gemma":[0.9993726,0.00002318958,0.00017850104,0.00028996015,0.0000036079837,0.00013211218],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003594978,0.00036983707,0.00040291913,0.00007708452,0.000076474826,0.000019097242,0.00017360634,0.00056775234,0.000017196056],"category_scores_gemma":[0.000011846267,0.00038204447,0.000041159918,0.00006400431,0.00033768066,0.000016148466,0.00025484868,0.0002112641,0.0000025020463],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002544343,0.00020104092,0.02817979,0.00002428656,0.000044754484,0.000016108941,0.0015149444,0.000019007157,0.96658367,0.000020335008,0.000018853749,0.003122779],"study_design_scores_gemma":[0.011789922,0.0025113318,0.3889213,0.00008242905,0.00014649585,0.0004463434,0.00424812,0.00010329443,0.58631366,0.0011944043,0.0019863704,0.0022563345],"about_ca_topic_score_codex":0.00033373325,"about_ca_topic_score_gemma":0.0011020922,"teacher_disagreement_score":0.38027,"about_ca_system_score_codex":0.000100826015,"about_ca_system_score_gemma":0.000024760246,"threshold_uncertainty_score":0.99986315},"labels":[],"label_agreement":null},{"id":"W2120526741","doi":"10.1128/aem.02099-13","title":"Characterization of Pleurotus ostreatus Biofilms by Using the Calgary Biofilm Device","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Ministero dell'Università e della Ricerca","keywords":"Biofilm; Pleurotus ostreatus; Hypha; Extracellular polymeric substance; Microbiology; Chemistry; Mycelium; Exopolymer; Scanning electron microscope; Biophysics; Biology; Food science; Bacteria; Materials science; Botany; Composite material","score_opus":0.004803486768940995,"score_gpt":0.1740400827220815,"score_spread":0.1692365959531405,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120526741","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991178,0.00021332869,0.000030815616,0.000054250333,0.00007076114,0.00025801125,0.0001460571,0.000004651489,0.00010433154],"genre_scores_gemma":[0.9973753,0.00024089983,0.00021136139,0.00044210092,0.000054813154,0.000008879629,0.0015843813,0.000016876606,0.00006535978],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99929017,0.000033272456,0.00018027693,0.00026595086,0.000021168997,0.00020913564],"domain_scores_gemma":[0.99966943,0.000006651774,0.000101815785,0.00017685037,0.0000038402236,0.000041411284],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000039495433,0.00015341642,0.0001401809,0.000015550697,0.000091771064,0.000012775004,0.00008309363,0.00014325621,0.000057076584],"category_scores_gemma":[0.0000014871728,0.000113502014,0.00003361542,0.000027904614,0.0002842249,0.0000041261665,0.00012914574,0.000058951395,0.000010393645],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019385621,0.000029622279,0.0008461315,0.0000049723853,0.000026415142,1.9558891e-7,0.00002232497,3.266855e-7,0.9962265,0.000008533237,0.00009398924,0.002721611],"study_design_scores_gemma":[0.00026423478,0.00007967365,0.0034336941,0.0000029833218,0.0000169836,0.00005006893,0.00007678929,0.000012221073,0.9878628,0.0000014353681,0.0080622425,0.00013683813],"about_ca_topic_score_codex":0.00008431829,"about_ca_topic_score_gemma":0.0000018932641,"teacher_disagreement_score":0.008363658,"about_ca_system_score_codex":0.000008003264,"about_ca_system_score_gemma":0.0000070596234,"threshold_uncertainty_score":0.46284777},"labels":[],"label_agreement":null},{"id":"W2120846931","doi":"10.1128/aem.68.8.3780-3789.2002","title":"Identification, Characterization, and Regulation of a Cluster of Genes Involved in Carbapenem Biosynthesis in <i>Photorhabdus luminescens</i>","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Entomopathogenic Microorganisms in Pest Control","field":"Agricultural and Biological Sciences","cited_by":129,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centre National de la Recherche Scientifique; Institut national de la recherche scientifique","keywords":"Photorhabdus luminescens; Biology; Operon; Photorhabdus; Gene cluster; Autoinducer; Microbiology; Quorum sensing; Gene; Genetics; Virulence; Escherichia coli","score_opus":0.004539560755248198,"score_gpt":0.14347184499152008,"score_spread":0.13893228423627188,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120846931","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99922204,0.00034108947,0.000003954547,0.00009846418,0.000016151911,0.00021701508,0.00008511442,0.000003733324,0.000012450703],"genre_scores_gemma":[0.9991533,0.0005596858,0.000030320945,0.00007129245,0.0000125577535,0.000012425735,0.00012939838,0.0000012570559,0.00002973612],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99929273,0.000040704443,0.0003157386,0.0002157668,0.00002504599,0.000110011155],"domain_scores_gemma":[0.9997548,0.000047451274,0.00012959362,0.000046350207,0.000003297439,0.000018510857],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000106250714,0.00009031995,0.00018406252,0.000026749743,0.000020633459,0.000003934386,0.00006655175,0.000101055804,0.00010651814],"category_scores_gemma":[0.000004186595,0.00005092423,0.000015402851,0.00008746192,0.00015408767,0.00003206426,0.000051588908,0.00003489434,0.000002211102],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012417487,0.000069248395,0.074558616,0.0000083048135,0.0000032360686,1.8986654e-7,0.00011491306,8.213199e-7,0.91573393,0.000019971976,0.0000022183442,0.009476147],"study_design_scores_gemma":[0.00028497327,0.000024299718,0.4650345,0.000008345141,0.0000059889517,0.0000057625616,0.00009232916,0.000055242403,0.5339899,0.000022694705,0.0003979694,0.00007796023],"about_ca_topic_score_codex":0.00003545836,"about_ca_topic_score_gemma":0.0001223936,"teacher_disagreement_score":0.3904759,"about_ca_system_score_codex":0.000014713145,"about_ca_system_score_gemma":8.7008175e-7,"threshold_uncertainty_score":0.20766298},"labels":[],"label_agreement":null},{"id":"W2120918440","doi":"10.1128/aem.66.8.3214-3220.2000","title":"Microbial Life beneath a High Arctic Glacier","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":384,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Glacier; Arctic; Psychrophile; Geology; Snow; Permafrost; Oceanography; Environmental chemistry; Ecology; Biology; Chemistry; Geomorphology; Paleontology; Bacteria","score_opus":0.003235427721422394,"score_gpt":0.16530070000662006,"score_spread":0.16206527228519765,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120918440","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952664,0.00009547032,0.00000873344,0.0002488769,0.000048158407,0.00023120508,0.00008959944,0.000024555771,0.003987037],"genre_scores_gemma":[0.9954278,0.00029107992,0.00034152847,0.0019727375,0.000057030324,0.000029835917,0.00022960232,0.00002005699,0.0016303672],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99855465,0.00004806456,0.00019216773,0.00051217305,0.00005372344,0.0006392481],"domain_scores_gemma":[0.9994681,0.00003400927,0.000032583925,0.00021564237,3.4526667e-7,0.00024935027],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000115983144,0.00020821599,0.00022284388,0.000026098276,0.0002151582,0.000016981592,0.00020547483,0.00016659766,0.05538658],"category_scores_gemma":[0.000003779687,0.00018976498,0.000044099776,0.00005771369,0.0008252539,0.0000650669,0.00025346986,0.00020596305,0.0065865964],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000112072295,0.00017331757,0.024895111,0.0000048052457,0.000030909847,0.000011317778,0.000128959,0.00005397062,0.9572318,0.00009038836,0.0021854455,0.01508189],"study_design_scores_gemma":[0.003923564,0.00061867316,0.4135902,0.0000068549966,0.00005955583,0.00059846067,0.00021895759,0.000053384443,0.019644318,0.0017156808,0.5584365,0.0011338475],"about_ca_topic_score_codex":0.00034075114,"about_ca_topic_score_gemma":0.000073214906,"teacher_disagreement_score":0.9375875,"about_ca_system_score_codex":0.00012845238,"about_ca_system_score_gemma":0.000006425871,"threshold_uncertainty_score":0.9941869},"labels":[],"label_agreement":null},{"id":"W2120943156","doi":"10.1128/aem.05864-11","title":"Active Autotrophic Ammonia-Oxidizing Bacteria in Biofilm Enrichments from Simulated Creek Ecosystems at Two Ammonium Concentrations Respond to Temperature Manipulation","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; European Commission","keywords":"Nitrosomonas; Anammox; Nitrification; Ammonium; Archaea; Environmental chemistry; Autotroph; Biology; Ammonia; Nitrosomonas europaea; Stable-isotope probing; Candidatus; Bacteria; Denitrification; Nitrite; Nitrate; Ecology; Chemistry; Denitrifying bacteria; Nitrogen; Microorganism; Biochemistry; 16S ribosomal RNA","score_opus":0.010914529332630854,"score_gpt":0.1919850645444546,"score_spread":0.18107053521182376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120943156","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986407,0.000050764353,0.000004005005,0.000025378964,0.00009727641,0.0006046572,0.00039804057,0.000028638782,0.0001505459],"genre_scores_gemma":[0.9957799,0.000024622697,0.0021860732,0.00015101128,0.000021773814,0.00003513583,0.0015362586,0.00002516295,0.0002400692],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985194,0.000085630534,0.00029771493,0.0006245372,0.00006158363,0.00041112103],"domain_scores_gemma":[0.9995415,0.000026905313,0.00009273132,0.00019930018,8.689439e-7,0.00013868367],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000058565744,0.00027483018,0.0002689998,0.000045428136,0.00017750713,0.000025051988,0.00013728366,0.00017796259,0.0014007916],"category_scores_gemma":[0.0000010119527,0.0002677718,0.00003669725,0.00009799383,0.00014553002,0.00011272163,0.00025243606,0.00012303627,0.00047978674],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037014153,0.00014732283,0.03323461,0.0000013636337,0.000038231137,0.00001324314,0.00088642153,0.000086266846,0.9648854,0.000003580846,0.00012892617,0.00020446331],"study_design_scores_gemma":[0.002002155,0.00014910623,0.11988968,0.000009248089,0.00003559274,0.000021167938,0.00027214864,0.00007474407,0.8755165,0.000060866016,0.0015905016,0.00037831356],"about_ca_topic_score_codex":0.0021924726,"about_ca_topic_score_gemma":0.0012143368,"teacher_disagreement_score":0.08936895,"about_ca_system_score_codex":0.0004624605,"about_ca_system_score_gemma":0.0000034350312,"threshold_uncertainty_score":0.99997747},"labels":[],"label_agreement":null},{"id":"W2121015226","doi":"10.1128/aem.02288-09","title":"Distribution and Diversity of <i>Escherichia coli</i> Populations in the South Nation River Drainage Basin, Eastern Ontario, Canada","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fecal contamination and water quality","field":"Environmental Science","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Environment and Climate Change Canada; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada","keywords":"Veterinary medicine; Biology; Genotype; Diversity index; Abundance (ecology); Livestock; Structural basin; Feces; Drainage basin; Escherichia coli; Ecology; Species diversity; Geography; Species richness; Genetics","score_opus":0.012313217020514786,"score_gpt":0.17867014091897795,"score_spread":0.16635692389846318,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121015226","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99864066,0.000008087022,0.00011845177,0.00026073089,0.000017974235,0.00015111887,0.00008128627,0.0000025125235,0.0007191575],"genre_scores_gemma":[0.9987407,0.000002216086,0.000047533173,0.00090003654,0.0000033599401,0.000002153472,0.00023878674,0.0000014265961,0.000063796775],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994976,0.000049803595,0.00012827224,0.0001607107,0.000053461074,0.000110153545],"domain_scores_gemma":[0.9998363,0.000014399326,0.000054314827,0.00006877231,5.8244143e-7,0.000025604186],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012883016,0.00007751842,0.00009035583,0.0000074363093,0.00013366263,0.000004714287,0.00006967238,0.000045553777,0.00007924896],"category_scores_gemma":[0.0000016525131,0.00006244931,0.000010922803,0.000035905065,0.00019092308,0.00004038304,0.00011023699,0.00007564082,0.000003329456],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004079913,0.0001283292,0.9109901,0.00000427812,0.0000057457432,0.0000026629034,0.006975758,0.00004090197,0.07694694,0.0016330011,0.00037455113,0.002856894],"study_design_scores_gemma":[0.00032072602,0.00003131861,0.99623054,0.0000012893286,0.000007575104,0.0000023608911,0.00044200566,0.000020052852,0.000607589,0.00047482795,0.0017872886,0.00007440369],"about_ca_topic_score_codex":0.3100325,"about_ca_topic_score_gemma":0.3337973,"teacher_disagreement_score":0.08524042,"about_ca_system_score_codex":0.00018008312,"about_ca_system_score_gemma":0.0000049676523,"threshold_uncertainty_score":0.6945621},"labels":[],"label_agreement":null},{"id":"W2121265409","doi":"10.1128/aem.67.7.3285-3290.2001","title":"Distribution, Isolation, Host Specificity, and Diversity of Cyanophages Infecting Marine <i>Synechococcus</i> spp. in River Estuaries","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":118,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of British Columbia; Woods Hole Oceanographic Institution; U.S. Department of Energy; National Oceanic and Atmospheric Administration; National Science Foundation","keywords":"Synechococcus; Biology; Estuary; Salinity; Isolation (microbiology); Host (biology); Ecology; Cyanobacteria; Microbiology; Bacteria; Genetics","score_opus":0.004611699233401464,"score_gpt":0.17713195018498856,"score_spread":0.1725202509515871,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121265409","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99847317,0.00003722885,0.00015238962,0.000057952242,0.00004354448,0.00016404095,0.00010010936,0.000010171296,0.0009614062],"genre_scores_gemma":[0.9988808,0.00053291675,0.00018155733,0.00009223375,0.0000138311925,0.0000040262084,0.00018507947,0.0000064383353,0.00010312429],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992823,0.000021904305,0.00019489283,0.00028099128,0.000026305554,0.00019361173],"domain_scores_gemma":[0.99972916,0.00004366246,0.00008476691,0.00009817179,0.0000010965866,0.00004315587],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007469416,0.00013805859,0.00017468054,0.000023991826,0.00019570364,0.000010221346,0.000073311836,0.0000900438,0.000941079],"category_scores_gemma":[0.0000035627727,0.00013693936,0.000022716102,0.00007196817,0.00062885723,0.00011294316,0.00096676726,0.000120441306,0.000046267887],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019527806,0.000066526394,0.4126059,0.0000028465886,0.000005879572,0.0000022441232,0.00019504233,0.000008702411,0.5856405,0.00002599927,0.000069989466,0.0013568439],"study_design_scores_gemma":[0.00044484547,0.000045434634,0.9762543,0.000004421221,0.000013386482,0.00006600807,0.00021440284,0.000007198737,0.01600976,0.00012960244,0.0066691656,0.00014150892],"about_ca_topic_score_codex":0.0009428349,"about_ca_topic_score_gemma":0.0003072057,"teacher_disagreement_score":0.56963074,"about_ca_system_score_codex":0.00008467573,"about_ca_system_score_gemma":0.0000012599763,"threshold_uncertainty_score":0.9999722},"labels":[],"label_agreement":null},{"id":"W2121302417","doi":"10.1128/aem.68.7.3261-3269.2002","title":"Functional Production and Characterization of a Fibrin-Specific Single-Chain Antibody Fragment from<i>Bacillus subtilis</i>: Effects of Molecular Chaperones and a Wall-Bound Protease on Antibody Fragment Production","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Protein purification and stability","field":"Biochemistry, Genetics and Molecular Biology","cited_by":200,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Heart and Stroke Foundation of Canada","keywords":"Bacillus subtilis; Protease; Monoclonal antibody; Antibody; Biochemistry; Biology; Extracellular; Chaperone (clinical); Chemistry; Molecular biology; Bacteria; Enzyme; Immunology","score_opus":0.0061965603245139255,"score_gpt":0.17746687035900532,"score_spread":0.1712703100344914,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121302417","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996497,0.0017325555,0.00043462036,0.00020949598,0.00009381218,0.00094335264,0.00006868804,0.0000070788537,0.000013421428],"genre_scores_gemma":[0.99619246,0.00232721,0.00012882127,0.00005992416,0.000054721815,0.00006559107,0.0011190358,0.000013778908,0.000038435],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988844,0.000067525616,0.000251188,0.0005893371,0.00006402403,0.00014353117],"domain_scores_gemma":[0.99954396,0.000009684336,0.0001572404,0.00023016002,0.000009860671,0.000049083857],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000919714,0.00018688409,0.00020535704,0.000060174683,0.000075262265,0.000007786112,0.000039792976,0.00014068348,0.000023819255],"category_scores_gemma":[0.000011994166,0.00017865589,0.000028817056,0.000045617413,0.00037628174,0.000008432355,0.000068992,0.000067784196,0.0000022443764],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019604084,0.00044201693,0.0022296412,0.00009225041,0.000044987126,5.486418e-7,0.00013895053,0.000004926839,0.99282163,0.000042119937,0.0000072047633,0.003979682],"study_design_scores_gemma":[0.00053212314,0.00043694556,0.04623545,0.00002641369,0.000019292238,0.000016558275,0.00004572223,0.00000966143,0.9510084,0.000033457436,0.0014794348,0.00015656438],"about_ca_topic_score_codex":0.0000049599944,"about_ca_topic_score_gemma":7.633574e-7,"teacher_disagreement_score":0.04400581,"about_ca_system_score_codex":0.000016591355,"about_ca_system_score_gemma":0.0000034914642,"threshold_uncertainty_score":0.72853756},"labels":[],"label_agreement":null},{"id":"W2121475075","doi":"10.1128/aem.70.11.6905-6908.2004","title":"In Vitro Laser Ablation of Natural Marine Biofilms","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Laser Applications in Dentistry and Medicine","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Windsor","funders":"","keywords":"Irradiation; Fluence; Titanium; Materials science; Laser; Biofilm; Neodymium; Yttrium; Laser ablation; Optics; Bacteria; Metallurgy; Biology","score_opus":0.003145208967046606,"score_gpt":0.20144874943371308,"score_spread":0.19830354046666648,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121475075","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99849933,0.00009964938,0.00002515295,0.0003200887,0.000051197356,0.00020463341,0.000019599345,0.0000066202397,0.00077375444],"genre_scores_gemma":[0.9974522,0.000108711196,0.001097986,0.0004896927,0.000035285284,0.000016546064,0.0005759543,0.0000060518846,0.00021755541],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995386,0.0000043433124,0.00016167563,0.00016086905,0.00002332609,0.00011117495],"domain_scores_gemma":[0.9998055,0.000011250229,0.000038769525,0.0001111099,0.00000127868,0.0000320665],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004386065,0.00007868931,0.00016406522,0.00004764525,0.000017253598,8.466008e-7,0.000029897119,0.000073290226,0.000097964374],"category_scores_gemma":[0.00000177236,0.00006590733,0.000017891172,0.00004952593,0.00020119922,0.000017494818,0.000050903152,0.000103130034,0.000020872423],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014370668,0.00013748738,0.0018945739,0.000019046549,0.000012816684,0.0000068229638,0.00005615185,0.0000045503425,0.99518853,0.00019679211,0.00003201414,0.0023075298],"study_design_scores_gemma":[0.002896629,0.0000634287,0.03183367,0.000008596444,0.000027289461,0.00025381029,0.000117692536,0.0000035329683,0.96157163,0.00032853996,0.0028248462,0.00007032071],"about_ca_topic_score_codex":0.000022631712,"about_ca_topic_score_gemma":0.0000022373135,"teacher_disagreement_score":0.033616867,"about_ca_system_score_codex":0.00004940424,"about_ca_system_score_gemma":0.000007025521,"threshold_uncertainty_score":0.26876226},"labels":[],"label_agreement":null},{"id":"W2121980868","doi":"10.1128/aem.03015-10","title":"Molecular Basis for Mycophenolic Acid Biosynthesis in Penicillium brevicompactum","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biochemical and Molecular Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":169,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fondation Chalmers; Danmarks Frie Forskningsfond","keywords":"Penicillium; Mycophenolic acid; Biosynthesis; Biology; Chemistry; Computational biology; Biochemistry; Microbiology; Genetics; Enzyme; Medicine; Transplantation","score_opus":0.010477374381063671,"score_gpt":0.20127152800625298,"score_spread":0.1907941536251893,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121980868","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969285,0.0012720556,0.00040430197,0.000060294937,0.000024931018,0.00034420745,0.00009411286,0.000006203622,0.000865375],"genre_scores_gemma":[0.9976627,0.00030036102,0.000996938,0.00055310084,0.000029123321,0.00009879594,0.00029222714,0.00002669278,0.000040019015],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99891746,0.000030117319,0.00017396222,0.00047093042,0.000029109668,0.00037841123],"domain_scores_gemma":[0.9996341,0.000009882385,0.000037176378,0.00022697472,0.0000030040526,0.0000889027],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000096459116,0.00018955229,0.00019333024,0.000047452515,0.00004490886,0.0000057829498,0.00016995141,0.00023030535,0.000064363674],"category_scores_gemma":[0.000009826267,0.00017483301,0.000076434924,0.000036591497,0.00024220123,0.000001780251,0.00019254306,0.00008916696,0.000017098333],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014484592,0.00011524339,0.0006993643,0.00001721607,0.00003622373,0.0000025294325,0.000044931974,4.1330836e-7,0.99645567,0.00012873118,0.00008945302,0.0022653579],"study_design_scores_gemma":[0.00055366644,0.00016720018,0.0018127261,0.0000049465616,0.000013666508,0.000027520538,0.000096076765,0.0000021964559,0.98947793,0.00013942416,0.0074874843,0.00021718246],"about_ca_topic_score_codex":0.000018027762,"about_ca_topic_score_gemma":0.000006327207,"teacher_disagreement_score":0.007398031,"about_ca_system_score_codex":0.00001883604,"about_ca_system_score_gemma":0.0000117487025,"threshold_uncertainty_score":0.7129483},"labels":[],"label_agreement":null},{"id":"W2122110053","doi":"10.1128/aem.68.2.977-980.2002","title":"Rapid Identification of Probiotic Lactobacillus Biosurfactant Proteins by ProteinChip Tandem Mass Spectrometry Tryptic Peptide Sequencing","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St Joseph's Health Care; University of Manitoba; Western University; Lawson Health Research Institute","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Probiotic; Tandem mass spectrometry; Mass spectrometry; Lactobacillus; Peptide mass fingerprinting; Peptide; Protein mass spectrometry; Tandem mass tag; Chemistry; Biology; Microbiology; Proteomics; Bacteria; Chromatography; Biochemistry; Quantitative proteomics","score_opus":0.008398057085501811,"score_gpt":0.18520493706593064,"score_spread":0.17680687998042882,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122110053","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9900065,0.00063871266,0.0065420507,0.00007969138,0.000010160787,0.0008008217,0.00035576263,0.000083917585,0.0014823659],"genre_scores_gemma":[0.98618114,0.00054272613,0.012240006,0.000035337423,0.000022791337,0.00022568314,0.00026988707,0.00003105621,0.00045137457],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99871844,0.000013225707,0.00044518846,0.0004673065,0.000054431894,0.0003014],"domain_scores_gemma":[0.9992876,0.000023805842,0.00029403213,0.0003263158,0.0000037766858,0.000064454616],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008428008,0.0002337009,0.00026998136,0.0000451835,0.00012713707,0.000013407749,0.00017520612,0.00020646707,0.0005546586],"category_scores_gemma":[0.000004401759,0.00022701875,0.000053107302,0.00007832822,0.00032266974,0.00004659608,0.00007352879,0.00022524725,0.000032111206],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008439681,0.0000974276,0.0002878117,0.000060067556,0.000027294498,7.184234e-7,0.00006120366,0.000004269583,0.99769443,0.00027782368,0.00004616962,0.0014343224],"study_design_scores_gemma":[0.00037136712,0.00005058514,0.00004844269,0.000016237,0.000023051884,0.000036142665,0.00017015084,0.00008993741,0.99652314,0.0007411454,0.0016829951,0.00024678127],"about_ca_topic_score_codex":0.0000065547206,"about_ca_topic_score_gemma":4.674708e-7,"teacher_disagreement_score":0.005697955,"about_ca_system_score_codex":0.00017048932,"about_ca_system_score_gemma":0.0000068377462,"threshold_uncertainty_score":0.9257556},"labels":[],"label_agreement":null},{"id":"W2122383447","doi":"10.1128/aem.01717-10","title":"Identification of Cold-Temperature-Regulated Genes in <i>Flavobacterium psychrophilum</i>","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"University of Guelph","keywords":"Biology; Suppression subtractive hybridization; Gene; Virulence; Microbiology; Proteases; Housekeeping gene; Complementary DNA; Gene expression; Yersinia ruckeri; Genetics; cDNA library","score_opus":0.004911581180757718,"score_gpt":0.16585874997081357,"score_spread":0.16094716879005586,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122383447","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99673283,0.0020019072,0.0000057998122,0.0000205869,0.00017823893,0.0003421784,0.00014915325,0.000023158636,0.00054612255],"genre_scores_gemma":[0.998014,0.00034499762,0.000028296596,0.00013403861,0.000009896821,0.00002612359,0.0007779586,0.000015676991,0.00064903765],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99888486,0.000057222343,0.0003956379,0.00038449376,0.000009913222,0.00026786752],"domain_scores_gemma":[0.9995974,0.00001073819,0.00015149593,0.00021767349,0.0000040264094,0.000018712046],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000099198616,0.00020593603,0.00028257884,0.00009958181,0.000063404965,0.000004409942,0.00015844744,0.0002699785,0.00028088267],"category_scores_gemma":[0.000001112228,0.00018732774,0.000051573763,0.000079521385,0.00048718083,0.00004206204,0.00011716939,0.00012999601,0.00015573521],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012231099,0.00025738543,0.0046832287,0.000020503358,0.00008607963,0.0000021342241,0.0003392676,4.413776e-7,0.99245346,0.0010971467,0.0003767778,0.00056128285],"study_design_scores_gemma":[0.0011789333,0.000060838982,0.04371913,0.00000849743,0.00005077368,0.000023111917,0.0003807138,1.7761134e-7,0.9476137,0.000056288558,0.006695941,0.0002118858],"about_ca_topic_score_codex":0.00002740681,"about_ca_topic_score_gemma":0.0000095652185,"teacher_disagreement_score":0.044839732,"about_ca_system_score_codex":0.000023531926,"about_ca_system_score_gemma":0.0000051741,"threshold_uncertainty_score":0.76390034},"labels":[],"label_agreement":null},{"id":"W2122473615","doi":"10.1128/aem.00796-10","title":"Characterization of <i>Lactococcus lactis</i> Phage 949 and Comparison with Other Lactococcal Phages","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Siphoviridae; Lactococcus lactis; Biology; Bacteriophage; Genome; Capsid; Genetics; ORFS; Plasmid; Phage display; Microbiology; Open reading frame; Bacteria; DNA; Virus; Peptide sequence; Gene; Escherichia coli","score_opus":0.0036272424242963773,"score_gpt":0.18969474975349265,"score_spread":0.18606750732919627,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122473615","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979356,0.000009981562,0.0001449096,0.000061838735,0.00007858578,0.00033219598,0.00014446888,0.00001675228,0.0012756732],"genre_scores_gemma":[0.9988685,0.000028132286,0.00045886965,0.0002580538,0.000029575493,0.000027116395,0.00012671125,0.000019755684,0.00018325167],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992341,0.000018064766,0.00019442271,0.0003185313,0.000030282976,0.00020462195],"domain_scores_gemma":[0.9996277,0.000024954968,0.00013153256,0.00014391835,9.1123434e-7,0.00007097142],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000051306008,0.00018027697,0.0002229143,0.000023242443,0.000096217016,0.00001658276,0.00008141455,0.00012498058,0.0016613282],"category_scores_gemma":[8.171313e-7,0.00014652674,0.000021359827,0.000038124963,0.0006427886,0.00011054861,0.00013427647,0.00021323367,0.000062467],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005967612,0.00013588191,0.016088367,0.0000061382525,0.000016826156,8.991602e-7,0.00022630353,9.0086644e-7,0.9791604,0.000032153876,0.000035072215,0.00423736],"study_design_scores_gemma":[0.00080918055,0.00015128503,0.22616164,0.000005647676,0.000035606052,0.00010962733,0.00014242626,0.00001007076,0.7113081,0.000011135748,0.061007164,0.00024807203],"about_ca_topic_score_codex":0.000072348776,"about_ca_topic_score_gemma":0.000115742405,"teacher_disagreement_score":0.26785228,"about_ca_system_score_codex":0.000017770442,"about_ca_system_score_gemma":0.0000022177665,"threshold_uncertainty_score":0.9992513},"labels":[],"label_agreement":null},{"id":"W2122672375","doi":"10.1128/aem.00010-10","title":"Characterization of Variation in Rumen Methanogenic Communities under Different Dietary and Host Feed Efficiency Conditions, as Determined by PCR-Denaturing Gradient Gel Electrophoresis Analysis","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":183,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Agricultural Research Institute","keywords":"Temperature gradient gel electrophoresis; Methanogen; Biology; Rumen; Methanogenesis; Feed conversion ratio; Population; Food science; Microbial population biology; Host (biology); Fibrobacter succinogenes; Animal feed; Microbiology; Bacteria; Animal science; 16S ribosomal RNA; Ecology; Fermentation; Body weight","score_opus":0.005308205376785199,"score_gpt":0.17735260283705864,"score_spread":0.17204439746027345,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122672375","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99934626,0.000083303974,0.0000047542962,0.00012278956,0.000021946578,0.00015803988,0.00023821631,0.0000075813714,0.000017138047],"genre_scores_gemma":[0.9974315,0.0005342447,0.000008954473,0.00012106349,0.000010715784,0.00003168544,0.0018501653,0.0000011551409,0.000010500686],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993579,0.000067138004,0.00018552339,0.0001976657,0.00002732588,0.00016447439],"domain_scores_gemma":[0.99972373,0.00009596883,0.00009503694,0.00004494818,0.0000029060827,0.000037428938],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005582989,0.00012499327,0.0002328001,0.0000458742,0.000114155024,0.000009276376,0.000072933755,0.00011329814,0.00013326657],"category_scores_gemma":[0.0000015591982,0.00006570828,0.000038309052,0.00010011088,0.000228219,0.000032588145,0.00006807604,0.00011313894,0.0000015883166],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004081556,0.00017621258,0.014448186,0.0000032176654,0.000037865415,1.9868149e-7,0.00010275022,4.1722984e-7,0.98470646,0.00012064608,0.0000013640571,0.00036185604],"study_design_scores_gemma":[0.00021339253,0.0001373485,0.7669226,0.000001730683,0.000044165354,0.000005097632,0.00020573378,0.000019960127,0.23216459,0.00016001762,0.000029150428,0.000096217685],"about_ca_topic_score_codex":0.00017560959,"about_ca_topic_score_gemma":0.00020277046,"teacher_disagreement_score":0.7525419,"about_ca_system_score_codex":0.00001559312,"about_ca_system_score_gemma":0.0000011931571,"threshold_uncertainty_score":0.2679506},"labels":[],"label_agreement":null},{"id":"W2122773612","doi":"10.1128/aem.71.7.4057-4068.2005","title":"Genomic Organization and Molecular Analysis of Virulent Bacteriophage 2972 Infecting an Exopolysaccharide-Producing <i>Streptococcus thermophilus</i> Strain","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":87,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Streptococcus thermophilus; Biology; ORFS; Genome; Genetics; Bacteriophage; Gene; Virulence; Intron; Open reading frame; Peptide sequence; Escherichia coli; Bacteria","score_opus":0.0035904612264426755,"score_gpt":0.18861784736407505,"score_spread":0.18502738613763237,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122773612","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991369,0.00006205628,0.00017312063,0.000044039356,0.000029302957,0.0002142345,0.00015313414,0.000020152092,0.00016700824],"genre_scores_gemma":[0.99857503,0.00010757945,0.00056625943,0.00032689422,0.000027299222,0.000008199249,0.00034523918,0.00002236878,0.00002110967],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989086,0.00003455037,0.0002925504,0.0005021739,0.000032082018,0.00023008333],"domain_scores_gemma":[0.99952155,0.000019363411,0.00015270973,0.00022443706,0.0000015914973,0.00008031682],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00010734793,0.00019720256,0.00027052558,0.00007871877,0.00013371767,0.000024304594,0.0001040881,0.000102720005,0.0018061704],"category_scores_gemma":[0.0000027730373,0.00019480493,0.000045605608,0.00016576101,0.0002718093,0.00014054282,0.00025223082,0.00011308281,0.000034287503],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000075982234,0.00009482581,0.010793469,0.000003565816,0.00011485894,0.0000012130002,0.00064460887,0.0003629313,0.97876835,0.000019618652,0.0000038870066,0.009185073],"study_design_scores_gemma":[0.00037107023,0.00007845223,0.41143435,0.0000035059747,0.0003269577,0.00004858472,0.00029376516,0.00012791298,0.5862622,0.0000124501,0.00074679736,0.0002939284],"about_ca_topic_score_codex":0.00009693904,"about_ca_topic_score_gemma":0.00006542755,"teacher_disagreement_score":0.40064088,"about_ca_system_score_codex":0.000096174146,"about_ca_system_score_gemma":0.0000030105798,"threshold_uncertainty_score":0.9991063},"labels":[],"label_agreement":null},{"id":"W2122797103","doi":"10.1128/aem.01207-06","title":"Virus-Specific Responses of <i>Heterosigma akashiwo</i> to Infection","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; University of New Brunswick","funders":"Natural Sciences and Engineering Research Council of Canada; European Commission","keywords":"Heterosigma akashiwo; Biology; Virus; Flow cytometry; Intracellular; Virology; Microbiology; Algal bloom; Molecular biology; Ecology; Cell biology","score_opus":0.004839219913846426,"score_gpt":0.18357740407693265,"score_spread":0.17873818416308623,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122797103","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99666196,0.000041289586,0.00022473623,0.00005971224,0.00010498891,0.00019190648,0.0001295334,0.000018967465,0.0025668822],"genre_scores_gemma":[0.9983769,0.0001062925,0.00057185895,0.00029654527,0.00003682585,0.000019781348,0.00008885277,0.000014156948,0.0004887847],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999193,0.000026673648,0.00022338922,0.00031565703,0.000028332737,0.00021292444],"domain_scores_gemma":[0.99969935,0.00002773721,0.00006795619,0.00015517518,6.4517786e-7,0.000049112892],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000060015984,0.00014580332,0.00015969654,0.000039783165,0.00009848841,0.000011111549,0.00007512498,0.00008875182,0.0013487516],"category_scores_gemma":[8.2897685e-7,0.0001397298,0.000043239303,0.00006434848,0.0002785147,0.000056424557,0.00019293744,0.00008305355,0.00051535567],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006454724,0.000112100366,0.004829053,0.0000020439993,0.000004980559,8.1480664e-7,0.000057700232,0.00004212776,0.99016947,0.000049830127,0.0022520858,0.002415278],"study_design_scores_gemma":[0.00024545335,0.0001035564,0.26939777,0.0000036602344,0.000008104913,0.000049712802,0.000025268257,7.5554556e-7,0.5406302,0.00005347767,0.18931957,0.00016245873],"about_ca_topic_score_codex":0.000542533,"about_ca_topic_score_gemma":0.00013587411,"teacher_disagreement_score":0.44953918,"about_ca_system_score_codex":0.00007635256,"about_ca_system_score_gemma":0.0000012492482,"threshold_uncertainty_score":0.9995642},"labels":[],"label_agreement":null},{"id":"W2122923807","doi":"10.1128/aem.69.5.2794-2799.2003","title":"Origin of Contamination and Genetic Diversity of <i>Escherichia coli</i> in Beef Cattle","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Beef cattle; RAPD; Genetic diversity; Feces; Feedlot; Restriction fragment length polymorphism; Escherichia coli; Population; Veterinary medicine; Pasture; Genetic marker; Genotype; Animal science; Microbiology; Genetics; Gene; Agronomy","score_opus":0.006013450485802784,"score_gpt":0.20017487956172966,"score_spread":0.19416142907592687,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122923807","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99840206,0.00097476866,0.000037822087,0.000008683406,0.000012079955,0.00013731718,0.000027308426,8.93014e-7,0.00039904122],"genre_scores_gemma":[0.9983154,0.0011718429,0.00038457973,0.0000385821,0.000004393053,0.000007701057,0.00003096374,0.000004559891,0.00004200387],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995396,0.00003847465,0.000111692956,0.00017265714,0.000021863973,0.00011568496],"domain_scores_gemma":[0.99983937,0.0000140201355,0.000046067664,0.00007454687,0.0000030276942,0.000022960154],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006807431,0.00007623898,0.00013566717,0.000021126974,0.000035403147,9.946407e-7,0.000044727796,0.0000771916,0.0000062123204],"category_scores_gemma":[0.000007122735,0.00007568056,0.000013476585,0.000027078537,0.00034238858,0.0000012401889,0.0001905862,0.000043130403,4.6027225e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024904628,0.000051608957,0.15047915,0.000016205053,0.000018688905,3.6137246e-7,0.000079804275,0.00000338767,0.8490171,0.00008552091,0.000016573165,0.00020669273],"study_design_scores_gemma":[0.0010044407,0.0002181591,0.42944124,0.0000036512542,0.000012290631,0.00000711117,0.00037953653,0.0000019692432,0.566019,0.000055239467,0.0027471087,0.000110244335],"about_ca_topic_score_codex":0.000028201133,"about_ca_topic_score_gemma":0.00003066212,"teacher_disagreement_score":0.28299809,"about_ca_system_score_codex":0.000009577171,"about_ca_system_score_gemma":0.000008311653,"threshold_uncertainty_score":0.30861637},"labels":[],"label_agreement":null},{"id":"W2122945182","doi":"10.1128/aem.02149-12","title":"Role of <i>rpoS</i> in Escherichia coli O157:H7 Strain H32 Biofilm Development and Survival","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lakehead University","funders":"Hong Kong Polytechnic University; Lakehead University","keywords":"rpoS; Biofilm; Mutant; Microbiology; Escherichia coli; Biology; Wild type; Bacteria; Enterobacteriaceae; Sigma factor; Distilled water; Strain (injury); Chemistry; Gene; Biochemistry; Genetics; Gene expression; Chromatography","score_opus":0.004437700260482946,"score_gpt":0.1728232111902953,"score_spread":0.16838551092981235,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122945182","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99835193,0.0009560324,0.0000040390037,0.000014476924,0.00006159543,0.00012197149,0.00007448374,0.0000030511594,0.00041239898],"genre_scores_gemma":[0.9978863,0.00019554052,0.0012865958,0.00013103266,0.000057367215,0.0000057406555,0.00039921957,0.000012908818,0.00002530405],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992441,0.00002859152,0.0001944598,0.00023035627,0.000019877067,0.0002826358],"domain_scores_gemma":[0.9997681,0.0000074711247,0.000060176128,0.00009630637,0.0000012800255,0.000066697125],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012658928,0.00015034877,0.00018283154,0.000023257004,0.00004101406,0.0000046516675,0.000046917405,0.00018351327,0.00001513703],"category_scores_gemma":[0.0000015357424,0.00014303722,0.000018437015,0.000022011669,0.00019874294,0.0000031922384,0.00014933432,0.000064424596,0.0000039051556],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005272254,0.0000764775,0.011651688,0.000007935938,0.000021746833,2.294145e-7,0.0001610054,4.0369977e-7,0.983562,0.000105384825,0.000011057348,0.0043493626],"study_design_scores_gemma":[0.0005150228,0.00006165073,0.053216215,0.0000038102721,0.000007008107,0.000013942217,0.0005174769,5.8700374e-7,0.9189915,0.0000058839196,0.02649072,0.00017618657],"about_ca_topic_score_codex":0.000015053581,"about_ca_topic_score_gemma":0.000019186382,"teacher_disagreement_score":0.06457049,"about_ca_system_score_codex":0.000010662585,"about_ca_system_score_gemma":0.00001003548,"threshold_uncertainty_score":0.58328885},"labels":[],"label_agreement":null},{"id":"W2123052595","doi":"10.1128/aem.66.1.406-412.2000","title":"Comparison of Animal Infectivity and Nucleic Acid Staining for Assessment of <i>Cryptosporidium parvum</i> Viability in Water","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Infectivity; Cryptosporidium parvum; Staining; Biology; Cryptosporidium; Nucleic acid; Fluorescence; Flow cytometry; Fluorescent staining; Protozoa; Microbiology; Loop-mediated isothermal amplification; Molecular biology; Apicomplexa; Virology; Virus; Biochemistry; Protozoal disease; DNA; Immunology; Feces","score_opus":0.009331099011223374,"score_gpt":0.26112556882437693,"score_spread":0.25179446981315357,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123052595","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987271,0.00020595346,0.00010711724,0.000017652592,0.000046363224,0.0003335472,0.0001367435,0.0000071105364,0.00041840583],"genre_scores_gemma":[0.99937457,0.000075133,0.00023203838,0.00003280024,0.0000059972717,0.000034908728,0.00022846588,0.0000075999806,0.0000084666],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99910825,0.000059315786,0.00032796263,0.0002498444,0.000008641858,0.00024595886],"domain_scores_gemma":[0.9996314,0.0001710312,0.00006819594,0.00011081139,0.000003539862,0.000014998737],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020567022,0.00013618705,0.0004054517,0.000044789034,0.00007375928,0.0000022103272,0.000043372136,0.00019178864,0.00026791092],"category_scores_gemma":[0.0000045378033,0.000113601236,0.000034238394,0.000023320863,0.00054696563,0.000026402306,0.000057364563,0.00013306619,0.0000060589523],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012516459,0.0003578583,0.23785968,0.00002633742,0.000030240217,1.6494374e-7,0.00024897986,0.000016344427,0.75899965,0.0003089422,0.000013089304,0.002013546],"study_design_scores_gemma":[0.0018226868,0.0007043979,0.26262942,0.000007851325,0.000038105165,0.000020011696,0.00034473403,0.000020380845,0.73204714,0.00020986868,0.0020047205,0.00015067431],"about_ca_topic_score_codex":0.00003746724,"about_ca_topic_score_gemma":0.000008539868,"teacher_disagreement_score":0.02695249,"about_ca_system_score_codex":0.000031166288,"about_ca_system_score_gemma":0.000009309728,"threshold_uncertainty_score":0.4632524},"labels":[],"label_agreement":null},{"id":"W2123099637","doi":"10.1128/aem.01124-08","title":"Molecular Characterization of a Variant of <i>Bacillus anthracis</i> -Specific Phage AP50 with Improved Bacteriolytic Activity","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Bacillus anthracis; Biology; Computational biology; Bacteriophage; Bacillaceae; Genetics; Bacillus (shape); Gene; Microbiology; Bacteria; Bacillus subtilis; Escherichia coli","score_opus":0.003999614539242158,"score_gpt":0.15884127780654572,"score_spread":0.15484166326730356,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123099637","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978204,0.000022803295,0.0011717639,0.00002543907,0.00004574012,0.00028500234,0.0002198773,0.00001122091,0.00039775737],"genre_scores_gemma":[0.99890983,0.00030582544,0.00042369438,0.00007321156,0.000010141189,0.000015619959,0.00018026879,0.000019283423,0.00006215129],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99910784,0.000029170347,0.00024345171,0.0003550246,0.000040812924,0.00022372899],"domain_scores_gemma":[0.9994884,0.000016575557,0.00021671882,0.00021859135,0.0000018779641,0.00005779585],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004535756,0.00019750035,0.0003080033,0.000032053664,0.00008982984,0.000004413976,0.000109132416,0.00010485857,0.00067989365],"category_scores_gemma":[6.6920194e-7,0.00016931837,0.0000485233,0.000075372314,0.0007983196,0.000107321044,0.00015513845,0.00011330258,0.000028796323],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014873402,0.00024119433,0.0003992407,0.000010121161,0.000030760286,0.000010805359,0.00023902408,0.0000059897866,0.9956606,0.000009406526,0.0000069577536,0.0032371704],"study_design_scores_gemma":[0.00066255283,0.00021348063,0.06930233,0.000007954446,0.000022081616,0.0003923214,0.000038828035,0.000017338989,0.9267367,0.000002735463,0.0024195055,0.00018415887],"about_ca_topic_score_codex":0.000058564896,"about_ca_topic_score_gemma":0.0000048558163,"teacher_disagreement_score":0.068923876,"about_ca_system_score_codex":0.000055875364,"about_ca_system_score_gemma":0.0000050886674,"threshold_uncertainty_score":0.74443585},"labels":[],"label_agreement":null},{"id":"W2123264831","doi":"10.1128/aem.03364-14","title":"Atmospheric Hydrogen Scavenging: from Enzymes to Ecosystems","year":2014,"lang":"en","type":"review","venue":"Applied and Environmental Microbiology","topic":"Metalloenzymes and iron-sulfur proteins","field":"Energy","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"","keywords":"Actinobacteria; Thermostability; Hydrogenase; Hydrogen; Scavenging; Biology; Environmental chemistry; Chemistry; Enzyme; Ecology; Biochemistry; Gene","score_opus":0.009862114351469125,"score_gpt":0.20691714371855652,"score_spread":0.19705502936708738,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123264831","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0022356769,0.99374866,0.00008159759,0.000012796441,0.0002794925,0.00096840353,0.0003957486,0.00007177139,0.0022058198],"genre_scores_gemma":[0.006029298,0.98792714,0.00074693176,0.00029250904,0.0005254247,0.00034287552,0.0030517622,0.00016251228,0.0009215204],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99733675,0.00016458645,0.0007394238,0.0010848996,0.00006615047,0.00060819596],"domain_scores_gemma":[0.99870604,0.00011307677,0.00029263063,0.0006434848,0.0000013053726,0.00024344401],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00015575298,0.00077948597,0.0021608144,0.000038060323,0.00013599469,0.000034405584,0.00043599366,0.0006831801,0.001268741],"category_scores_gemma":[0.000003808916,0.0006419285,0.00032929756,0.000087945074,0.00012945622,0.000024299985,0.00046276796,0.00032140675,0.0030019917],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011427753,0.000088148365,0.000004309805,0.0013119471,0.00055847346,0.0000093833605,0.000086180095,0.000032652093,0.017301625,0.0028313124,0.0012678449,0.9764967],"study_design_scores_gemma":[0.00026751217,0.00007510873,0.0000014195043,0.0004345359,0.0003173911,0.00006349194,0.00002960804,0.000008055816,0.0004457807,0.00008651162,0.99757993,0.0006906472],"about_ca_topic_score_codex":0.00032038288,"about_ca_topic_score_gemma":0.00005654007,"teacher_disagreement_score":0.9963121,"about_ca_system_score_codex":0.00015358182,"about_ca_system_score_gemma":0.000017749064,"threshold_uncertainty_score":0.9996442},"labels":[],"label_agreement":null},{"id":"W2123273873","doi":"10.1128/aem.72.2.1579-1587.2006","title":"A Quorum-Quenching Approach To Investigate the Conservation of Quorum-Sensing-Regulated Functions within the <i>Burkholderia cepacia</i> Complex","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Quorum sensing; Burkholderia cepacia complex; Biology; Microbiology; Burkholderia; Quorum Quenching; Swarming motility; Biofilm; Proteases; Caenorhabditis elegans; Bacteria; Genetics; Biochemistry; Gene; Enzyme","score_opus":0.007656536494608623,"score_gpt":0.1702553562467046,"score_spread":0.16259881975209597,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123273873","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99752194,0.00009318008,0.00026321012,0.0007773207,0.00010119445,0.00034211527,0.00009374537,0.000010282611,0.0007969861],"genre_scores_gemma":[0.9954878,0.000010751866,0.0013237026,0.0018690154,0.000111238376,0.000010389136,0.0010523935,0.000018531158,0.00011618548],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990387,0.00007323091,0.00028647657,0.00033462298,0.000036588903,0.0002303903],"domain_scores_gemma":[0.9995169,0.00001676323,0.0001431429,0.00027659727,0.0000067053625,0.000039890594],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001746489,0.00018924662,0.00017615242,0.000022321063,0.0002921951,0.000023209477,0.00011202964,0.00015195663,0.000005919052],"category_scores_gemma":[0.000005027064,0.00012384183,0.00004877352,0.00006948856,0.00063079677,0.0000032497617,0.0001558523,0.00010238345,0.0000058911714],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000053158612,0.000036648213,0.00037288608,0.0000049118457,0.0000341926,1.6730995e-7,0.000094509756,0.00019065365,0.9960959,0.00055614184,0.0023508596,0.00020996177],"study_design_scores_gemma":[0.0006054458,0.0001362271,0.012222143,0.000008383556,0.00005328039,0.00015226672,0.0007767741,0.0001452514,0.9433328,0.00012313259,0.042149376,0.00029491162],"about_ca_topic_score_codex":0.00026149233,"about_ca_topic_score_gemma":0.00006915829,"teacher_disagreement_score":0.0527631,"about_ca_system_score_codex":0.000012990309,"about_ca_system_score_gemma":0.000014700462,"threshold_uncertainty_score":0.50501233},"labels":[],"label_agreement":null},{"id":"W2123497476","doi":"10.1128/aem.71.2.867-875.2005","title":"Comparison of Ileum Microflora of Pigs Fed Corn-, Wheat-, or Barley-Based Diets by Chaperonin-60 Sequencing and Quantitative PCR","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":103,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Centre for Disease Control; Genome Prairie; University of Saskatchewan; Plant Biotechnology Institute","funders":"","keywords":"Biology; Library; Primer (cosmetics); Polymerase chain reaction; Phylogenetic tree; Chaperonin; Ileum; Genetics; Bacteria; Gene; Biochemistry; 16S ribosomal RNA","score_opus":0.012735964459645822,"score_gpt":0.25705444707554714,"score_spread":0.24431848261590133,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123497476","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9942547,0.0017227897,0.0031712998,0.000088167195,0.000011334204,0.00028055217,0.00034089273,0.000007968794,0.00012227173],"genre_scores_gemma":[0.99095243,0.00043318723,0.007136844,0.00031803164,0.000014146182,0.000042907486,0.0010302372,0.00001744066,0.0000547491],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990513,0.000030141411,0.00030691968,0.00038526015,0.000024876006,0.0002015182],"domain_scores_gemma":[0.99955195,0.000023525876,0.00016703371,0.00019802584,0.0000063839284,0.000053089498],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007904343,0.00018917029,0.00030915317,0.00003083137,0.000071973365,0.0000033270596,0.00011107601,0.00023700482,0.000030429985],"category_scores_gemma":[0.0000037864327,0.00016463171,0.00004259644,0.000031246942,0.0006323443,0.0000023807613,0.00012371437,0.000088108754,0.0000024347398],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016668493,0.00011938434,0.003088322,0.00001996845,0.00004097817,2.7680704e-7,0.00007564397,0.000009277001,0.9945134,0.00013676811,0.0006892778,0.0011400036],"study_design_scores_gemma":[0.0006500001,0.00068730174,0.00077189633,0.000009536286,0.000027665781,0.000014321499,0.00030062126,0.00007533821,0.9865857,0.000017907885,0.010674391,0.00018533041],"about_ca_topic_score_codex":0.000016073374,"about_ca_topic_score_gemma":0.000009178212,"teacher_disagreement_score":0.009985113,"about_ca_system_score_codex":0.000017954042,"about_ca_system_score_gemma":0.000021977565,"threshold_uncertainty_score":0.67134863},"labels":[],"label_agreement":null},{"id":"W2123781838","doi":"10.1128/aem.00076-10","title":"Growth Kinetics of<i>Hyphomicrobium</i>and<i>Thiobacillus</i>spp. in Mixed Cultures Degrading Dimethyl Sulfide and Methanol","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Odor and Emission Control Technologies","field":"Chemical Engineering","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Thiobacillus; Microorganism; Biology; Bacteria; Methanol; Sulfide; Food science; Dimethyl sulfide; Chemistry; Microbiology; Biochemistry; Sulfur; Organic chemistry","score_opus":0.003710327655490375,"score_gpt":0.18058397346870564,"score_spread":0.17687364581321527,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123781838","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982563,0.0009319851,0.00016535464,0.00011037283,0.000072608054,0.00013537549,0.00004528567,0.000045862078,0.00023685241],"genre_scores_gemma":[0.9964491,0.00062302034,0.0027319922,0.0000733395,0.000018791074,0.000013207184,0.000032585274,0.000017799453,0.000040153835],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99911827,0.000012803301,0.00025120613,0.00032744458,0.000025734882,0.00026451322],"domain_scores_gemma":[0.99961424,0.00012808785,0.000059072758,0.00013514518,0.0000021720584,0.00006128619],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008929186,0.00021046255,0.0003389198,0.00007614919,0.000034941695,0.000008229017,0.00011281555,0.0003275828,0.00002551917],"category_scores_gemma":[0.000032354048,0.00017651959,0.000025922716,0.00005025558,0.00041970538,0.000028017963,0.00023964167,0.0003559451,0.000003446204],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000221729,0.00003448076,0.0015929266,0.000028227396,0.000018471934,0.0000016546636,0.000113198206,0.0000025403142,0.9924251,0.0007415784,0.000038372273,0.0049812826],"study_design_scores_gemma":[0.00088151963,0.000035996814,0.0025868,0.000009332236,0.000021161672,0.00005376127,0.00023343292,0.00002611327,0.9925499,0.00051523687,0.002882055,0.00020467634],"about_ca_topic_score_codex":0.00002843078,"about_ca_topic_score_gemma":0.000013599761,"teacher_disagreement_score":0.0047766063,"about_ca_system_score_codex":0.000015044711,"about_ca_system_score_gemma":0.0000017767132,"threshold_uncertainty_score":0.71982604},"labels":[],"label_agreement":null},{"id":"W2123815603","doi":"10.1128/aem.67.5.2292-2297.2001","title":"Applications of Gene Replacement Technology to <i>Streptomyces clavuligerus</i> Strain Development for Clavulanic Acid Production","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Research Council Canada; National Science Council","keywords":"Streptomyces clavuligerus; Clavulanic acid; Biology; Mutant; Microbiology; Strain (injury); Gene; Biochemistry; Antibiotics; Amoxicillin","score_opus":0.006185846027349157,"score_gpt":0.2188198465814836,"score_spread":0.21263400055413445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123815603","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946136,0.00042532026,0.0008282438,0.0021326058,0.00004608213,0.0017006147,0.00012249223,0.000034743032,0.000096292744],"genre_scores_gemma":[0.983827,0.00018580804,0.01450398,0.00043542226,0.00008867453,0.00009900887,0.00044644863,0.000015121781,0.00039852425],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989371,0.0000069419825,0.00030314105,0.00048257614,0.000034010827,0.00023624714],"domain_scores_gemma":[0.9995967,0.000010935118,0.00009334274,0.00022900532,0.000009483819,0.000060498325],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000118887685,0.00015998958,0.00027181863,0.00012155668,0.00009807215,0.0000032020694,0.000073181676,0.00015309337,0.00004649507],"category_scores_gemma":[0.0000067518336,0.000132839,0.000032503936,0.00012352935,0.00015810045,0.0000134610145,0.000062979016,0.00008413803,0.000020643449],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022882342,0.00016209496,0.0007139316,0.00004066224,0.000057482604,4.3760772e-7,0.00006892674,6.622684e-7,0.94287914,0.00006725808,0.00027966994,0.055500906],"study_design_scores_gemma":[0.0004116643,0.00017574428,0.000543448,0.000010215067,0.000038412054,0.00013215846,0.0002481214,2.4030422e-7,0.82258195,0.00004060224,0.17569892,0.00011852404],"about_ca_topic_score_codex":0.0000015625461,"about_ca_topic_score_gemma":0.0000032473224,"teacher_disagreement_score":0.17541926,"about_ca_system_score_codex":0.000067545065,"about_ca_system_score_gemma":0.000019713561,"threshold_uncertainty_score":0.54170173},"labels":[],"label_agreement":null},{"id":"W2124004552","doi":"10.1128/aem.00717-07","title":"Effect of pH on Intracellular Accumulation of Trace Concentrations of Hg(II) in <i>Escherichia coli</i> under Anaerobic Conditions, as Measured Using a <i>mer-lux</i> Bioreporter","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mercury impact and mitigation studies","field":"Environmental Science","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Fisheries and Oceans Canada; University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; Manitoba Hydro","keywords":"Bioreporter; Escherichia coli; Anaerobic exercise; Chemistry; Toxicity; Bacteria; Environmental chemistry; Nuclear chemistry; Biology; Biochemistry; Reporter gene","score_opus":0.018201936867705236,"score_gpt":0.2694828204880168,"score_spread":0.2512808836203116,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124004552","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99864846,0.0001379667,0.00026528552,0.000018071561,0.000039582323,0.0004137065,0.000048655795,0.00000494017,0.00042333163],"genre_scores_gemma":[0.99950486,0.000055814562,0.00021840858,0.00009923143,0.0000066728453,0.0000061545857,0.00008540753,0.00000934596,0.000014114728],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989516,0.00006949452,0.00047570604,0.0002248676,0.00008045959,0.00019783927],"domain_scores_gemma":[0.9994181,0.000121061064,0.00028194903,0.00013057135,0.0000017728856,0.00004656636],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034039046,0.00015873373,0.00032303255,0.000053026564,0.000080111844,0.0000019404129,0.00005996533,0.00011451291,0.00020214655],"category_scores_gemma":[0.0000068039853,0.00014309611,0.000046131525,0.00012600711,0.0007167922,0.000055079414,0.000057438152,0.00008808765,0.000006114368],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012033929,0.00014646765,0.03179375,0.000014743586,0.00002646729,8.859179e-7,0.00042625112,0.0008304328,0.9660881,0.00009699724,0.000016949543,0.0004385823],"study_design_scores_gemma":[0.0009487673,0.0003567274,0.061087873,0.000016646482,0.000046655452,0.000009259691,0.0004338206,0.000028116801,0.9367351,0.000067719084,0.00014910722,0.00012022185],"about_ca_topic_score_codex":0.00006118042,"about_ca_topic_score_gemma":0.000015214007,"teacher_disagreement_score":0.029353049,"about_ca_system_score_codex":0.00006230602,"about_ca_system_score_gemma":0.0000061773653,"threshold_uncertainty_score":0.583529},"labels":[],"label_agreement":null},{"id":"W2124113913","doi":"10.1128/aem.00032-08","title":"Highly Sensitive and Specific PCR Assay for Reliable Detection of <i>Cyclospora cayetanensis</i> Oocysts","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency","funders":"Tribhuvan University","keywords":"Cyclospora cayetanensis; Biology; Cryptosporidium; Cyclospora; DNA extraction; Microbiology; Cryptosporidium parvum; Polymerase chain reaction; Apicomplexa; Virology; Feces; Gene; Protozoal disease; Genetics","score_opus":0.005838535125804163,"score_gpt":0.17329946840957586,"score_spread":0.1674609332837717,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124113913","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99634206,0.0011981063,0.0010389944,0.000024462763,0.00025893256,0.00032201514,0.00027211316,0.000020859801,0.00052246515],"genre_scores_gemma":[0.9976863,0.0013020341,0.00028040307,0.00012728824,0.000027864191,0.000025231451,0.000347813,0.000014363098,0.00018865],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991546,0.000036087138,0.00022864029,0.00031655806,0.000009433691,0.00025468186],"domain_scores_gemma":[0.99951005,0.00023204643,0.00009909014,0.00012719633,0.000007819517,0.00002380043],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010433207,0.00017091529,0.00030044914,0.000059808848,0.00025367952,0.0000025199404,0.000034966724,0.0002684834,0.000021585744],"category_scores_gemma":[0.0000072085545,0.00016205556,0.000043218064,0.000034799912,0.00072878436,0.000025716232,0.000051011393,0.00012366452,0.000046771987],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012910225,0.000091002854,0.0015569882,0.000009862579,0.00006688584,0.000003803758,0.00014580744,0.000005028226,0.995992,0.00038311724,0.00055207364,0.0010643476],"study_design_scores_gemma":[0.0015794529,0.00026025632,0.014079343,0.0000068302447,0.000052988147,0.001255163,0.00026607286,0.0000023282269,0.94715804,0.000121841804,0.03500629,0.0002113767],"about_ca_topic_score_codex":0.000036111196,"about_ca_topic_score_gemma":0.0000045133,"teacher_disagreement_score":0.04883392,"about_ca_system_score_codex":0.000030656756,"about_ca_system_score_gemma":0.000007974686,"threshold_uncertainty_score":0.6608434},"labels":[],"label_agreement":null},{"id":"W2124433320","doi":"10.1128/aem.66.3.1114-1119.2000","title":"Initial Colonization, Nutrient Supply, and Fungal Activity on Leaves Decaying in Streams","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Freshwater macroinvertebrate diversity and ecology","field":"Environmental Science","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Allison University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Hyphomycetes; Spore; Conidium; Ergosterol; Biology; Hypha; Biomass (ecology); Botany; Nutrient; Horticulture; Ecology","score_opus":0.004117654534787136,"score_gpt":0.1666163764559308,"score_spread":0.16249872192114367,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124433320","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971901,0.000022711714,0.0000049167797,0.00013582372,0.000033402608,0.00018313092,0.000060723032,0.000012313091,0.002356849],"genre_scores_gemma":[0.99878234,0.00018229734,0.00005539895,0.00071136124,0.00001298622,0.000010577215,0.00007177803,0.000007739299,0.00016555157],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99915075,0.000041657746,0.00011024056,0.000380523,0.000032860073,0.0002839647],"domain_scores_gemma":[0.9997876,0.000032466694,0.000026762946,0.00008662552,2.3322865e-7,0.00006627775],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00006385447,0.00014721054,0.00015712873,0.000030568037,0.00016073867,0.00001251028,0.00007874315,0.00013134848,0.0038514517],"category_scores_gemma":[9.702195e-7,0.000145763,0.000014314358,0.000046137662,0.00055168255,0.000073597526,0.00015588514,0.00012834866,0.00039002855],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000441148,0.00047436813,0.42221302,0.000008181245,0.000018966364,0.00004031596,0.0010273391,0.00053663476,0.5298783,0.0002095999,0.0008874521,0.044264644],"study_design_scores_gemma":[0.004223939,0.00086033385,0.8576602,0.000012169561,0.000030236119,0.00020383806,0.0007628156,0.0004184042,0.111175746,0.00089300686,0.022989007,0.00077031204],"about_ca_topic_score_codex":0.00016637474,"about_ca_topic_score_gemma":0.00029537026,"teacher_disagreement_score":0.43544716,"about_ca_system_score_codex":0.000098218254,"about_ca_system_score_gemma":0.0000022219765,"threshold_uncertainty_score":0.99705917},"labels":[],"label_agreement":null},{"id":"W2124488983","doi":"10.1128/aem.71.3.1237-1246.2005","title":"Characterization of the <i>cro-ori</i> Region of the <i>Streptococcus thermophilus</i> Virulent Bacteriophage DT1","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Temperateness; Streptococcus thermophilus; Virulence; Bacteriophage; Plasmid; Escherichia coli; Promoter; Gene; Replicon; Genetics; Molecular biology; Gene expression; Bacteria","score_opus":0.0033100020856512173,"score_gpt":0.15828956248392737,"score_spread":0.15497956039827615,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124488983","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99751115,0.000023630497,0.000024273284,0.0004209902,0.00016856664,0.00041101003,0.00016128129,0.000007621142,0.0012714916],"genre_scores_gemma":[0.9984201,0.00010855368,0.000034646673,0.00073969696,0.000043707176,0.000019575727,0.00003128883,0.000015364138,0.0005870459],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99911803,0.000049831007,0.0003143465,0.0002718105,0.00005054661,0.00019545559],"domain_scores_gemma":[0.9993051,0.00001704762,0.00028398243,0.00036004465,0.0000013482073,0.00003243963],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000056407378,0.0001705915,0.00018493285,0.000012352889,0.00014970363,0.0000070325914,0.00029256332,0.000107932,0.00072804914],"category_scores_gemma":[0.000001392835,0.000105947925,0.000102892634,0.00007607817,0.00070611195,0.000077545534,0.00047272275,0.00014135124,0.000037735626],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001887275,0.00010809175,0.0031097669,0.0000054715133,0.0000135099235,1.9380317e-7,0.00022928712,0.000014616471,0.99246466,0.000027373404,0.00014006709,0.0038680793],"study_design_scores_gemma":[0.00026846575,0.000024061757,0.2235293,0.000011123784,0.000023734876,0.000044429744,0.000044269258,0.0000038091528,0.7313514,0.000010871234,0.044586226,0.00010231343],"about_ca_topic_score_codex":0.00003345285,"about_ca_topic_score_gemma":0.000031416323,"teacher_disagreement_score":0.26111326,"about_ca_system_score_codex":0.00007832114,"about_ca_system_score_gemma":0.0000044932067,"threshold_uncertainty_score":0.7971627},"labels":[],"label_agreement":null},{"id":"W2124827754","doi":"10.1128/aem.00153-13","title":"Defining the Functional Potential and Active Community Members of a Sediment Microbial Community in a High-Arctic Hypersaline Subzero Spring","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"National Research Council Canada; Biotechnology Research Institute; McGill University","funders":"Joint Genome Institute; U.S. Department of Energy","keywords":"Metagenomics; Microbial population biology; Biology; Thaumarchaeota; Bacteroidetes; Permafrost; Nitrogen cycle; Microbial mat; Ecology; Proteobacteria; Environmental chemistry; Arctic; Nitrification; Archaea; Cyanobacteria; Bacteria; Chemistry; 16S ribosomal RNA; Biochemistry; Nitrogen","score_opus":0.006229108481245284,"score_gpt":0.18186950589976428,"score_spread":0.175640397418519,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124827754","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991464,0.00006957211,0.000013717326,0.00019009685,0.000037123256,0.00030399728,0.000042191914,0.000005865988,0.00019105595],"genre_scores_gemma":[0.9992688,0.000058181802,0.00016964937,0.0003298181,0.000008673357,0.00003944766,0.000098339515,0.000009915295,0.000017228645],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99886495,0.0003587055,0.00020215093,0.00017614028,0.000051647232,0.00034640307],"domain_scores_gemma":[0.99944323,0.00022065811,0.00007220593,0.00019751815,0.0000012170493,0.00006517019],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00040908135,0.00014734874,0.00020312512,0.000036410718,0.0003960129,0.000010950165,0.00017776195,0.00010549429,0.0011155782],"category_scores_gemma":[0.000011046404,0.00011732522,0.000027076458,0.000052368356,0.0012798931,0.000075298645,0.0008523088,0.00065942126,0.000078166595],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011992508,0.00024423545,0.06892102,0.000010701593,0.00003484508,0.0000010362878,0.0008195363,0.00018289754,0.9279038,0.000097007876,0.000077460914,0.0015875519],"study_design_scores_gemma":[0.0013877625,0.00019182704,0.9788532,0.0000062680174,0.000018524514,0.000075113,0.003588267,0.00007675497,0.014823483,0.00055014505,0.00026534635,0.00016327751],"about_ca_topic_score_codex":0.020978408,"about_ca_topic_score_gemma":0.0021857433,"teacher_disagreement_score":0.9130803,"about_ca_system_score_codex":0.00016173636,"about_ca_system_score_gemma":0.0000059873937,"threshold_uncertainty_score":0.9997975},"labels":[],"label_agreement":null},{"id":"W2124835457","doi":"10.1128/aem.02623-06","title":"Flagellin Diversity in <i>Clostridium botulinum</i> Groups I and II: a New Strategy for Strain Identification","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Botulinum Toxin and Related Neurological Disorders","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences; Health Canada","funders":"","keywords":"Flagellin; Clostridium botulinum; Biology; Molecular mass; Gel electrophoresis; Clostridiaceae; Microbiology; Sequence analysis; Strain (injury); Gene; Peptide sequence; Molecular biology; Genetics; Biochemistry; Bacteria; Toxin","score_opus":0.01562116932381009,"score_gpt":0.21891889565352832,"score_spread":0.20329772632971824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124835457","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975891,0.0004624597,0.0006925481,0.00041041907,0.000042325177,0.00051761634,0.000054640117,0.000017457249,0.00021340721],"genre_scores_gemma":[0.9976707,0.0007425611,0.00021602251,0.00082990667,0.000033726054,0.000004562438,0.00026408484,0.00000914261,0.00022929725],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991465,0.0000114946,0.00021541837,0.00034492364,0.000026608192,0.00025502843],"domain_scores_gemma":[0.99970925,0.00004816414,0.00004999949,0.0000822523,0.000001185948,0.00010913201],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016371185,0.00013431149,0.00019614148,0.000049765986,0.00013609065,0.0000047893454,0.000044318807,0.00026293428,0.000038828235],"category_scores_gemma":[0.0000033411359,0.00011701883,0.00003318798,0.00004471168,0.00022296264,0.000021286934,0.00012696296,0.00019276561,0.000007532011],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037972882,0.00017798605,0.0034551625,0.000017002438,0.00002105361,0.000010102467,0.00022816847,0.0000067843575,0.9852644,0.0004071458,0.0001805779,0.009851851],"study_design_scores_gemma":[0.032393295,0.0046067755,0.7090691,0.000051079372,0.00046448832,0.0007124678,0.005261803,0.00021588107,0.20859809,0.018026015,0.019159168,0.0014418489],"about_ca_topic_score_codex":0.000013862007,"about_ca_topic_score_gemma":0.000016333752,"teacher_disagreement_score":0.77666634,"about_ca_system_score_codex":0.000024149938,"about_ca_system_score_gemma":0.0000064894843,"threshold_uncertainty_score":0.47718894},"labels":[],"label_agreement":null},{"id":"W2124901130","doi":"10.1128/aem.69.11.6932-6934.2003","title":"Influence of Storage on Monodispersed Cells of <i>Mycobacterium terrae</i> Used for Quantitative Carrier Test prEN 14563","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Medical Device Sterilization and Disinfection","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Ottawa","keywords":"Coco; Homogenization (climate); Food science; Suspension culture; Mycobacterium; Chemistry; Microbiology; Biology; Cell culture; Bacteria","score_opus":0.006204732832223039,"score_gpt":0.20362355369944957,"score_spread":0.19741882086722654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124901130","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979461,0.00014864505,0.00028025085,0.000012375226,0.00013720836,0.00039163156,0.0006100296,0.000009832318,0.00046396596],"genre_scores_gemma":[0.99911183,0.000057446636,0.00009615957,0.00020126076,0.000004040749,0.00002868382,0.00035453952,0.00001119009,0.00013484072],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99919206,0.00006790957,0.0002878835,0.00025765478,0.000013660717,0.00018083109],"domain_scores_gemma":[0.9994403,0.00022433924,0.00016581248,0.00013725917,0.000006893935,0.000025411608],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010249108,0.0001511134,0.00029442762,0.000049451843,0.000058126927,0.0000019548015,0.00006147904,0.0002072003,0.00019698018],"category_scores_gemma":[0.000029031688,0.00013087272,0.00004838974,0.00003780738,0.0005006014,0.000025360629,0.000026111657,0.00008506243,0.000025811789],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013893854,0.00019132902,0.0022849306,0.000044070894,0.00004610174,1.404467e-7,0.0004530988,0.00007432055,0.995306,0.001217119,0.00013761483,0.00010632357],"study_design_scores_gemma":[0.0020326122,0.00065850053,0.004623896,0.000017204979,0.000040013936,0.0000103004895,0.00063701696,0.000002476336,0.9795586,0.00006025721,0.012209867,0.00014928622],"about_ca_topic_score_codex":0.000009074869,"about_ca_topic_score_gemma":0.0000029266396,"teacher_disagreement_score":0.015747445,"about_ca_system_score_codex":0.000018604922,"about_ca_system_score_gemma":0.000012953137,"threshold_uncertainty_score":0.5336835},"labels":[],"label_agreement":null},{"id":"W2124958296","doi":"10.1128/aem.66.6.2658-2663.2000","title":"Rhizobitoxine Production by <i>Bradyrhizobium elkanii</i> Enhances Nodulation and Competitiveness on <i>Macroptilium atropurpureum</i>","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":131,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Plant Biotechnology Institute","funders":"","keywords":"Bradyrhizobium; Biology; Botany; Ethylene; Symbiosis; Bacteria; Biochemistry; Genetics","score_opus":0.002633982915590646,"score_gpt":0.14773087966302348,"score_spread":0.14509689674743284,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124958296","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978813,0.00035534153,3.4453694e-7,0.00064330816,0.00007983499,0.0002569962,0.00018424986,0.000046672172,0.0005519571],"genre_scores_gemma":[0.997682,0.00026678157,0.000043492913,0.00064088264,0.00015277871,0.000025959038,0.00069255556,0.0000031018367,0.0004924624],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99891245,0.00005174548,0.00017424628,0.00054380443,0.00005086747,0.0002668761],"domain_scores_gemma":[0.99976325,0.000051224288,0.000057869423,0.00005952593,0.0000023234095,0.000065816006],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007963175,0.00021312242,0.00019738109,0.000008306959,0.000229638,0.000023607725,0.00008799788,0.00013646281,0.0006174067],"category_scores_gemma":[0.0000015230876,0.000105519764,0.000031114112,0.00006159681,0.0002639928,0.0000611972,0.00004485646,0.00011859957,0.000108437525],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000074305935,0.00010173931,0.0019377646,0.0000037535465,0.000013187111,4.9042694e-7,0.00003556184,3.41343e-7,0.97676396,0.000031204414,0.0002596459,0.02077804],"study_design_scores_gemma":[0.00029162838,0.00031024838,0.022131551,0.000010148621,0.00001878502,0.000052955827,0.00012818517,0.0000014213446,0.9499791,0.00006105302,0.02671279,0.00030208263],"about_ca_topic_score_codex":0.000034709097,"about_ca_topic_score_gemma":0.00001828994,"teacher_disagreement_score":0.026784815,"about_ca_system_score_codex":0.000029719662,"about_ca_system_score_gemma":0.0000011554381,"threshold_uncertainty_score":0.676017},"labels":[],"label_agreement":null},{"id":"W2125112738","doi":"10.1128/aem.00026-10","title":"<i>Rickettsia felis</i>Infection in a Common Household Insect Pest,<i>Liposcelis bostrychophila</i>(Psocoptera: Liposcelidae)","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"","keywords":"Psocoptera; Biology; PEST analysis; Insect; Felis; Virology; Zoology; Botany; Medicine; CATS","score_opus":0.006369499255645368,"score_gpt":0.18526372127831003,"score_spread":0.17889422202266467,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125112738","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957588,0.0007927638,0.000006294051,0.000080768776,0.000796524,0.000546315,0.00020402411,0.00016000555,0.0016545475],"genre_scores_gemma":[0.9970901,0.0005481655,0.000030674782,0.0010198718,0.00010594345,0.00013151579,0.0008715586,0.00005663409,0.00014551118],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99791884,0.00013389801,0.00048363858,0.0007698378,0.000026364392,0.0006674239],"domain_scores_gemma":[0.9991969,0.00012531121,0.00016730203,0.0004318807,0.000004715749,0.00007387583],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001808927,0.0004635296,0.0005358603,0.00021301486,0.00025682343,0.00003321852,0.00020679105,0.0007218596,0.0004237513],"category_scores_gemma":[0.000009995215,0.0004587311,0.00011593492,0.00013292843,0.00073415594,0.00010364046,0.00023633892,0.0010188287,0.0004653772],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000116759926,0.0004570158,0.19219708,0.000014485267,0.00007052938,0.000011303011,0.00012488173,0.000007057117,0.8038351,0.00013913507,0.0008720095,0.0021546658],"study_design_scores_gemma":[0.005404917,0.00047091188,0.66194636,0.000026592845,0.00014519058,0.0013701054,0.00014736707,0.0000023333698,0.25011063,0.00043984732,0.078823574,0.0011121696],"about_ca_topic_score_codex":0.0006366681,"about_ca_topic_score_gemma":0.0007519633,"teacher_disagreement_score":0.55372447,"about_ca_system_score_codex":0.000092043534,"about_ca_system_score_gemma":0.000024627212,"threshold_uncertainty_score":0.99978644},"labels":[],"label_agreement":null},{"id":"W2125165060","doi":"10.1128/aem.02860-08","title":"Pea Aphid as both Host and Vector for the Phytopathogenic Bacterium <i>Pseudomonas syringae</i>","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":103,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Biology; Pseudomonas syringae; Phyllosphere; Aphid; Honeydew; Bacteria; Host (biology); Microbiology; Pseudomonas fluorescens; Virulence; Pathogenic bacteria; Pathogen; Botany; Gene; Genetics","score_opus":0.005202322633075197,"score_gpt":0.1674305212812221,"score_spread":0.16222819864814692,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125165060","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99764276,0.00060132775,8.984192e-7,0.001014326,0.000093279436,0.00032766795,0.00016448092,0.00001751112,0.0001377355],"genre_scores_gemma":[0.99689853,0.00053931226,0.000034304754,0.00207537,0.00024683677,0.000029661198,0.00012282768,0.0000012664386,0.000051900824],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992465,0.000019388111,0.00014358183,0.00030542345,0.000024323554,0.00026079742],"domain_scores_gemma":[0.9997315,0.000109324355,0.000059640755,0.000047761252,0.0000017990619,0.000050016584],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009710314,0.00016242011,0.0001695419,0.0000046867963,0.00032985455,0.000046192992,0.00012308305,0.00010119101,0.00010371759],"category_scores_gemma":[0.0000023063396,0.00005922126,0.000050700008,0.00002992087,0.00021732003,0.000037252335,0.000060712562,0.00006847628,0.000013598297],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000056357025,0.00003770684,0.00049281464,0.0000019359948,0.00000922355,4.9889326e-7,0.00004900753,9.063401e-8,0.9871458,0.0002626903,0.000077311604,0.011866573],"study_design_scores_gemma":[0.00068580545,0.0014395266,0.59983665,0.000011603145,0.000064324304,0.00021626729,0.0006305587,0.0000046625637,0.29333717,0.0005947162,0.10262481,0.00055391947],"about_ca_topic_score_codex":0.000026000473,"about_ca_topic_score_gemma":0.000012466735,"teacher_disagreement_score":0.6938086,"about_ca_system_score_codex":0.000009977937,"about_ca_system_score_gemma":0.0000016045645,"threshold_uncertainty_score":0.2537008},"labels":[],"label_agreement":null},{"id":"W2125222839","doi":"10.1128/aem.01626-13","title":"Coherence among Different Microbial Source Tracking Markers in a Small Agricultural Stream with or without Livestock Exclusion Practices","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fecal contamination and water quality","field":"Environmental Science","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Alberta; Public Health Agency of Canada; Environment and Climate Change Canada; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Riparian zone; Biology; Livestock; Veterinary medicine; Cryptosporidium; Indicator bacteria; Ecology; Feces; Habitat; Fecal coliform; Water quality; Medicine","score_opus":0.011649629319055263,"score_gpt":0.1956817589633225,"score_spread":0.18403212964426724,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125222839","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984446,0.000014013875,0.00005709893,0.000095466494,0.000024239125,0.00072187436,0.000008835584,0.00002498968,0.0006088609],"genre_scores_gemma":[0.9981836,0.000015784863,0.0003731454,0.00023232226,0.000015103156,0.00008585716,0.00008398518,0.000014083082,0.0009960866],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99872154,0.000108644126,0.00024669906,0.00051461346,0.000056102228,0.00035238068],"domain_scores_gemma":[0.9994512,0.00007637123,0.00022907984,0.00013552984,0.0000012986496,0.00010651391],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00010414595,0.00026189696,0.00025354544,0.000027044005,0.00012992203,0.000049187496,0.00015931526,0.00013417921,0.0012516511],"category_scores_gemma":[0.0000053792037,0.00015926646,0.000025023579,0.00005895727,0.0005216229,0.00017947507,0.00027509374,0.00021251604,0.00012876406],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010217885,0.00016231624,0.31779295,0.000008433755,0.000009946159,0.0000021711187,0.0008590341,0.00002749996,0.67352116,0.0000023406735,0.00007233378,0.0074396306],"study_design_scores_gemma":[0.0012217993,0.000268741,0.9749148,0.000024159079,0.000017005896,0.00005894649,0.0025599683,0.000070938935,0.020077992,0.000014566813,0.00042716297,0.00034393035],"about_ca_topic_score_codex":0.0012505456,"about_ca_topic_score_gemma":0.0023733445,"teacher_disagreement_score":0.65712184,"about_ca_system_score_codex":0.00013972164,"about_ca_system_score_gemma":0.0000031217755,"threshold_uncertainty_score":0.9996613},"labels":[],"label_agreement":null},{"id":"W2125320332","doi":"10.1128/aem.67.9.3923-3927.2001","title":"Effect of <i>Bacillus thuringiensis</i> Cry1 Toxins in Insect Hemolymph and Their Neurotoxicity in Brain Cells of <i>Lymantria dispar</i>","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect Resistance and Genetics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Lymantria dispar; Bacillus thuringiensis; Hemolymph; Biology; Microbiology; Insect; Dispar; Zoology; Bacteria; Lepidoptera genitalia; Botany; Genetics","score_opus":0.002250551815005259,"score_gpt":0.16871974810857698,"score_spread":0.16646919629357174,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125320332","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99839205,0.0010126847,0.00001712669,0.000019178886,0.000027514914,0.0002944865,0.000069734546,0.0000019541244,0.00016525951],"genre_scores_gemma":[0.9980786,0.0015420228,0.00002575965,0.00021748699,0.000017479073,0.000014356321,0.000069238595,0.0000129221735,0.000022128821],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990776,0.0000854871,0.00025521842,0.00032337898,0.000022382736,0.0002358952],"domain_scores_gemma":[0.9996555,0.000053453696,0.000080889346,0.0001751772,0.0000015284204,0.00003346035],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017019593,0.00018656121,0.00031017547,0.00005233464,0.000021365498,0.000002608921,0.00008814852,0.00017487424,0.0000051546353],"category_scores_gemma":[0.000005231292,0.00015770383,0.000040461684,0.0000547197,0.00029424482,0.0000020989214,0.00014645726,0.00007562213,7.226815e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041351188,0.00008321297,0.02581802,0.000043182077,0.000012480238,0.0000039057204,0.00009580111,0.000034343306,0.9713116,0.000005934626,0.000020182171,0.0021577692],"study_design_scores_gemma":[0.0016525688,0.0005511795,0.011777715,0.0000112708185,0.000005719222,0.00004646179,0.000054443295,0.000006209092,0.98439735,0.00001678455,0.0013380027,0.00014227374],"about_ca_topic_score_codex":0.000032437296,"about_ca_topic_score_gemma":0.00011207981,"teacher_disagreement_score":0.014040306,"about_ca_system_score_codex":0.000011661294,"about_ca_system_score_gemma":0.000007724459,"threshold_uncertainty_score":0.6430976},"labels":[],"label_agreement":null},{"id":"W2125574196","doi":"10.1128/aem.01902-09","title":"Prolonged Survival of<i>Campylobacter</i>Species in Bovine Manure Compost","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Compost; Campylobacter; Manure; Biology; Campylobacter fetus; Campylobacter jejuni; Microbiology; Bacteria; Population; Campylobacter coli; Animal science; Feces; Food science; Agronomy","score_opus":0.008608106086488487,"score_gpt":0.17410695718499009,"score_spread":0.1654988510985016,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125574196","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975618,0.00027717938,0.0000011364588,0.00062356296,0.000056733574,0.00018447125,0.00010270026,0.000016835687,0.0011755816],"genre_scores_gemma":[0.99853164,0.00023094688,0.00004220071,0.00060428306,0.00006818061,0.0000060128946,0.00045088088,9.3728636e-7,0.00006494468],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989637,0.000075611184,0.0002928823,0.00033149964,0.000030679672,0.00030560908],"domain_scores_gemma":[0.9996804,0.00011288101,0.00009330014,0.000059034683,0.0000019030092,0.000052453735],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015470748,0.00017188529,0.00036693533,0.0000151969425,0.000051294675,0.000005428774,0.00015004096,0.00017283011,0.00019055753],"category_scores_gemma":[0.0000034877335,0.0000789411,0.000047944908,0.00007082146,0.00022260213,0.00002511309,0.00006967113,0.00013052486,0.0000143357665],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009776343,0.00011845972,0.09234273,0.0000021145463,0.000006665078,0.0000025578886,0.000044560653,9.851244e-7,0.89827883,0.0003919707,0.00006641124,0.008646946],"study_design_scores_gemma":[0.00036828607,0.00040918926,0.97575635,0.00000516332,0.0000074535383,0.00003118383,0.0002915017,0.0000017938852,0.012942804,0.00049553305,0.009513123,0.00017762776],"about_ca_topic_score_codex":0.00002388744,"about_ca_topic_score_gemma":0.00007260473,"teacher_disagreement_score":0.88533604,"about_ca_system_score_codex":0.000019604375,"about_ca_system_score_gemma":0.0000014825555,"threshold_uncertainty_score":0.32191247},"labels":[],"label_agreement":null},{"id":"W2125599019","doi":"10.1128/aem.69.1.490-494.2003","title":"Enhanced Toxic Metal Accumulation in Engineered Bacterial Cells Expressing <i>Arabidopsis thaliana</i> Phytochelatin Synthase","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Stress Responses and Tolerance","field":"Agricultural and Biological Sciences","cited_by":152,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics","keywords":"Phytochelatin; Bioremediation; Arsenic; Arabidopsis thaliana; Glutathione; Biochemistry; Phytoremediation; Escherichia coli; Cadmium; Metalloid; Arabidopsis; Biology; ATP synthase; Chemistry; Enzyme; Metal; Gene; Bacteria; Environmental chemistry; Heavy metals; Mutant; Genetics","score_opus":0.010470511238534442,"score_gpt":0.18665933257241868,"score_spread":0.17618882133388425,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125599019","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990981,0.00015786292,0.000018556211,0.000021798502,0.00008089673,0.00017141736,0.00017861609,0.000021964173,0.00025077994],"genre_scores_gemma":[0.9993391,0.00009761942,0.00012955996,0.00007800021,0.000041704894,0.000021568476,0.00024976188,0.000002086513,0.00004058699],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991607,0.0000633593,0.00018029143,0.00030778497,0.00003095077,0.00025690265],"domain_scores_gemma":[0.9997436,0.00010665425,0.000058052858,0.000042029373,8.8939214e-7,0.000048804235],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006853609,0.00015886141,0.00019815665,0.000012363966,0.00005959233,0.000017755572,0.00006844304,0.00012582622,0.00027380395],"category_scores_gemma":[0.000003928293,0.00008085495,0.00003657914,0.0000558411,0.000071679075,0.000052626874,0.000031680425,0.00008879261,0.000017055481],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000067650246,0.000059703936,0.0002686342,0.000002511897,0.0000066569837,0.0000025773834,0.000041475767,0.000048434897,0.9943616,0.000028299255,0.000010260837,0.005102221],"study_design_scores_gemma":[0.00043231377,0.000047516605,0.012960168,0.000009591277,0.000007240882,0.000012428458,0.000130737,0.000020838574,0.9808111,0.000036322504,0.0053269626,0.00020478514],"about_ca_topic_score_codex":0.000018710254,"about_ca_topic_score_gemma":0.00002641208,"teacher_disagreement_score":0.013550478,"about_ca_system_score_codex":0.000020841915,"about_ca_system_score_gemma":0.0000019058132,"threshold_uncertainty_score":0.32971692},"labels":[],"label_agreement":null},{"id":"W2125701719","doi":"10.1128/aem.01052-10","title":"Correlation of Particular Bacterial PCR-Denaturing Gradient Gel Electrophoresis Patterns with Bovine Ruminal Fermentation Parameters and Feed Efficiency Traits","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":118,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Temperature gradient gel electrophoresis; Rumen; Biology; Feed conversion ratio; Residual feed intake; Isovalerate; Fermentation; Dry matter; Food science; Bacteria; Animal science; 16S ribosomal RNA; Butyrate; Genetics; Body weight","score_opus":0.004127801699920678,"score_gpt":0.15883240470801788,"score_spread":0.15470460300809719,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125701719","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995398,0.000033713222,0.000013602523,0.00008838726,0.000040870003,0.0001956257,0.000060281054,0.000009094146,0.00001860471],"genre_scores_gemma":[0.9993533,0.00007661774,0.000111871595,0.00005440667,0.000028300283,0.000016255794,0.0003524096,0.0000013450041,0.0000055144164],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993439,0.00002679733,0.0001457223,0.00026197114,0.000032182557,0.00018946704],"domain_scores_gemma":[0.9997898,0.000043433938,0.00008424023,0.000026259399,0.0000030435401,0.00005325607],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004537261,0.00012373274,0.00015796098,0.000013643406,0.00010103703,0.0000098645705,0.000046898793,0.000090716465,0.00007299818],"category_scores_gemma":[0.0000019335992,0.000057540237,0.000021952836,0.000036945843,0.0002591487,0.00003224598,0.00003358429,0.00009828168,0.0000022153795],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021383968,0.00010781921,0.0122664925,0.0000052449163,0.000009632608,9.873539e-7,0.000057140212,0.000002041119,0.98156166,0.00011016914,0.0000040876753,0.005660858],"study_design_scores_gemma":[0.0005012183,0.0006880946,0.7852704,0.0000046728433,0.000020402258,0.00005071863,0.00020587501,0.00002028525,0.21293731,0.00006523055,0.000110559544,0.00012525753],"about_ca_topic_score_codex":0.000029637526,"about_ca_topic_score_gemma":0.000034340614,"teacher_disagreement_score":0.7730039,"about_ca_system_score_codex":0.000009299749,"about_ca_system_score_gemma":0.0000015694967,"threshold_uncertainty_score":0.23464228},"labels":[],"label_agreement":null},{"id":"W2125710135","doi":"10.1128/aem.01533-08","title":"Nitric Oxide Reductase Gene Expression and Nitrous Oxide Production in Nitrate-Grown <i>Pseudomonas mandelii</i>","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Nova Scotia Department of Agriculture; University of Guelph; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Ontario Innovation Trust","keywords":"Nitrate reductase; Nitrous oxide; Denitrification; Nitrate; Nitric oxide; Gene expression; Nitrous-oxide reductase; Chemistry; Pseudomonas; Electron acceptor; Molecular biology; Nitrite reductase; Biochemistry; Gene; Biology; Nitrogen; Bacteria; Organic chemistry","score_opus":0.006688497600088443,"score_gpt":0.16796888574986013,"score_spread":0.1612803881497717,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125710135","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987569,0.00040338194,0.0000065061076,0.000046804893,0.000034127483,0.00038209985,0.000024624325,0.000029242812,0.0003163431],"genre_scores_gemma":[0.9942574,0.0008158444,0.0041635,0.00014878203,0.000032329135,0.00004898342,0.00019027604,0.000024498095,0.00031837335],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985142,0.000055481654,0.00026920065,0.00067942997,0.00007250836,0.0004091854],"domain_scores_gemma":[0.999591,0.000018444576,0.00007533831,0.00019938653,6.689664e-7,0.00011514591],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00010103249,0.00029028265,0.00025958873,0.000069027956,0.00022324148,0.000009558083,0.000099750316,0.0001513772,0.00008773934],"category_scores_gemma":[0.0000019162242,0.00024942274,0.000034097993,0.00009377356,0.0006174671,0.00011932998,0.00024654204,0.00016282234,0.00014224711],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010990645,0.00018148826,0.056780107,0.000004069104,0.000010715149,0.000059299266,0.00015447172,0.000036378686,0.9419836,0.0000026258724,0.00027951883,0.00039782506],"study_design_scores_gemma":[0.0012225397,0.00005156905,0.05380007,0.0000055263195,0.000021363494,0.0015908894,0.00023226136,0.0000043396653,0.9420599,0.00020459808,0.0004929789,0.00031400315],"about_ca_topic_score_codex":0.00017303717,"about_ca_topic_score_gemma":0.000018791423,"teacher_disagreement_score":0.004499456,"about_ca_system_score_codex":0.00012221272,"about_ca_system_score_gemma":0.000004068693,"threshold_uncertainty_score":0.9999958},"labels":[],"label_agreement":null},{"id":"W2125784690","doi":"10.1128/aem.00284-08","title":"Analysis of Vaginal Lactobacilli from Healthy and Infected Brazilian Women","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Lawson Health Research Institute","funders":"","keywords":"Bacterial vaginosis; Lactobacillus crispatus; Lactobacillus; Temperature gradient gel electrophoresis; Microbiology; Vagina; Biology; Vaginal infections; Vulvovaginal Candidiasis; Polymerase chain reaction; Bacteria; Medicine; Gene; 16S ribosomal RNA; Obstetrics; Genetics; Candida albicans","score_opus":0.008287784137378004,"score_gpt":0.21736402585014675,"score_spread":0.20907624171276873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125784690","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99787384,0.00113098,0.00002994098,0.00005368171,0.00005756781,0.00017988667,0.000364124,0.0000213502,0.00028862976],"genre_scores_gemma":[0.99777913,0.0010165737,0.00004314643,0.000104050385,0.000011521048,0.000028686418,0.00085888075,0.000010173148,0.00014784696],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988071,0.00011159942,0.00025001742,0.0004763794,0.000016273594,0.00033865645],"domain_scores_gemma":[0.9994628,0.0001497388,0.000090225,0.0002491895,0.000005806741,0.00004227774],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00012048852,0.00016717713,0.0004427912,0.00024707543,0.00019101697,0.000003132589,0.00008223877,0.00020976656,0.0009519038],"category_scores_gemma":[0.0000092959135,0.000152748,0.000045710793,0.00019647398,0.0013442988,0.00003868492,0.00013391496,0.00024471382,0.00008431886],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014226844,0.00016419338,0.23142482,0.0000037333632,0.0008925091,0.0000014050349,0.0007083045,0.0000043696855,0.76469237,0.000036473055,0.00004373482,0.0018858273],"study_design_scores_gemma":[0.0012099596,0.00031712218,0.93436295,0.0000014983955,0.00014304071,0.00011156382,0.0004699268,0.0000016357719,0.054756917,0.000053188753,0.008386069,0.00018615524],"about_ca_topic_score_codex":0.00026835114,"about_ca_topic_score_gemma":0.000020394215,"teacher_disagreement_score":0.7099354,"about_ca_system_score_codex":0.00006950011,"about_ca_system_score_gemma":0.000017481978,"threshold_uncertainty_score":0.9999614},"labels":[],"label_agreement":null},{"id":"W2125814622","doi":"10.1128/aem.70.9.5415-5425.2004","title":"<i>Shewanella oneidensis</i> MR-1 Restores Menaquinone Synthesis to a Menaquinone-Negative Mutant","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Simon Fraser University; National Science Foundation","keywords":"Shewanella oneidensis; Electron acceptor; Quinone; Redox; Shewanella; Biophysics; Electron transport chain; Chemistry; Mutant; Biochemistry; Electron transfer; Bacteria; Electron donor; Biology; Photochemistry; Inorganic chemistry; Catalysis","score_opus":0.004210367717305419,"score_gpt":0.16714817483452857,"score_spread":0.16293780711722314,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125814622","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961561,0.00006780585,0.000072038776,0.0005310384,0.0001119246,0.0005422111,0.00012960442,0.00004135452,0.0023479322],"genre_scores_gemma":[0.9958007,0.00030317175,0.0019535262,0.0015919723,0.00007101826,0.00006509497,0.000063286345,0.000031321688,0.00011993603],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982457,0.000045299766,0.00032423608,0.000746069,0.00011060078,0.0005280624],"domain_scores_gemma":[0.9993051,0.00009396992,0.00010474847,0.0002739418,0.0000013957754,0.00022079081],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00018007532,0.0003362315,0.00033026768,0.000053095646,0.00022449007,0.00002543738,0.00021777966,0.00018813819,0.0011043292],"category_scores_gemma":[0.000015174595,0.00029333745,0.00006036314,0.00012493091,0.0005239177,0.000069579226,0.0004353361,0.00015281675,0.0016928791],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008031608,0.0001323497,0.00056830014,0.0000063779676,0.00002358266,0.000012406734,0.00064874726,0.0004806867,0.99595845,0.00006147888,0.00080047356,0.0012268514],"study_design_scores_gemma":[0.0006417777,0.00018791234,0.003485646,0.000017413015,0.00003703421,0.00006830893,0.00043647413,0.0000032387327,0.97984284,0.00041332873,0.0143809095,0.00048509132],"about_ca_topic_score_codex":0.000409734,"about_ca_topic_score_gemma":0.00019279792,"teacher_disagreement_score":0.016115563,"about_ca_system_score_codex":0.00034486662,"about_ca_system_score_gemma":0.000008471663,"threshold_uncertainty_score":0.9999519},"labels":[],"label_agreement":null},{"id":"W2125833022","doi":"10.1128/aem.01445-08","title":"Production of Verotoxin and Distribution of O Islands 122 and 43/48 among Verotoxin-Producing <i>Escherichia coli</i> O103:H2 Isolates from Cattle and Humans","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; University of Guelph","funders":"Ministry of Agriculture, Food and Rural Affairs; Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Agriculture, Food and Rural Affairs","keywords":"Escherichia coli; VTEC; Biology; Enterobacteriaceae; Microbiology; Distribution (mathematics); Genetics; Gene","score_opus":0.005515276519542879,"score_gpt":0.19205037493975563,"score_spread":0.18653509842021276,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125833022","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99720067,0.002142897,0.000036206995,0.000031934494,0.000031912696,0.000345886,0.0001702327,0.0000040171617,0.00003624248],"genre_scores_gemma":[0.9948572,0.0043824655,0.00015925788,0.00002594132,0.000046475932,0.000036215264,0.0004274079,0.000011493735,0.000053560307],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99914944,0.000037617116,0.00018437616,0.00042364374,0.000031371696,0.00017356827],"domain_scores_gemma":[0.9996926,0.000017114615,0.00009161609,0.00014697928,0.000006506821,0.00004515859],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009282871,0.00015402671,0.00023359444,0.000017838825,0.00013502814,0.0000042421552,0.000046908324,0.00012606232,0.000004169816],"category_scores_gemma":[0.000014719443,0.00014469959,0.000018421375,0.000029829303,0.0010598737,0.0000066917864,0.00023585247,0.00009150947,4.510095e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000099862824,0.000072625524,0.09182332,0.000034315377,0.00006353754,3.3663423e-7,0.00033538035,0.0000014733387,0.90715945,0.0000059968775,0.00017003107,0.00023368784],"study_design_scores_gemma":[0.0009127998,0.0002472998,0.3101633,0.000011822138,0.000027976525,0.000015024037,0.00037415238,0.000006899311,0.6870286,0.000029854293,0.0010204138,0.00016188061],"about_ca_topic_score_codex":0.00009250029,"about_ca_topic_score_gemma":0.000026054558,"teacher_disagreement_score":0.22013085,"about_ca_system_score_codex":0.000010379607,"about_ca_system_score_gemma":0.000008272403,"threshold_uncertainty_score":0.59006774},"labels":[],"label_agreement":null},{"id":"W2125869795","doi":"10.1128/aem.01333-07","title":"Microarray Analysis of <i>Escherichia coli</i> Strains from Interstitial Beach Waters of Lake Huron (Canada)","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ministry of the Environment, Conservation and Parks; Université de Montréal; Biotechnology Research Institute; University of Guelph","funders":"","keywords":"Escherichia coli; Tetracycline; Biology; Microarray; Gene; Microarray analysis techniques; Microbiology; Genetics; Gene expression; Antibiotics","score_opus":0.004462245898113034,"score_gpt":0.19759969797381566,"score_spread":0.19313745207570263,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125869795","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977202,0.0003017828,0.00041478546,0.00002605422,0.00004217629,0.00012462707,0.0008834025,0.0000023477105,0.00048462534],"genre_scores_gemma":[0.9971262,0.00015831887,0.0005155939,0.00021137776,0.00003249161,0.0000051736906,0.0018942873,0.000011512849,0.000044998204],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99905485,0.000029278315,0.00027211488,0.0003201979,0.0000582817,0.000265259],"domain_scores_gemma":[0.9996128,0.00002622172,0.00010605102,0.00018677006,0.0000061092105,0.00006203873],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012874906,0.00015649045,0.00031847923,0.0000522763,0.000043176406,0.0000024473004,0.00014444222,0.00012710434,0.000039316397],"category_scores_gemma":[0.000005231763,0.00014646459,0.00007524386,0.00008341369,0.0005007981,0.0000015206863,0.00019056167,0.00008963871,4.4369875e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013996713,0.00007118139,0.018760605,0.000008887,0.00092715793,0.0000015435431,0.00009615011,0.000020106769,0.97939944,0.000013218247,0.0002011421,0.0003605922],"study_design_scores_gemma":[0.00056310743,0.00018149859,0.111854315,0.0000030823362,0.00021456383,0.000001215281,0.00085655315,0.0000050161957,0.8760008,0.000004598411,0.010137037,0.00017817055],"about_ca_topic_score_codex":0.0030274258,"about_ca_topic_score_gemma":0.0510333,"teacher_disagreement_score":0.103398606,"about_ca_system_score_codex":0.000023224418,"about_ca_system_score_gemma":0.00003152278,"threshold_uncertainty_score":0.96628284},"labels":[],"label_agreement":null},{"id":"W2125960956","doi":"10.1128/aem.00128-11","title":"Bacteriophages LIMElight and LIMEzero of Pantoea agglomerans, Belonging to the “phiKMV-Like Viruses”","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Vlaamse regering; Fonds Wetenschappelijk Onderzoek","keywords":"Biology; Pantoea agglomerans; Pantoea; Genome; Myoviridae; Context (archaeology); Lytic cycle; Bacteriophage; Bacterial virus; ORFS; Microbiology; Genetics; Open reading frame; Bacteria; Gene; Virus; Pseudomonas; Escherichia coli","score_opus":0.008415771163633423,"score_gpt":0.18062770413059548,"score_spread":0.17221193296696205,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125960956","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978,0.00018515288,0.000058563994,0.00013561633,0.0001221023,0.00027138152,0.00009737616,0.000015294489,0.0013145059],"genre_scores_gemma":[0.9972746,0.0003595677,0.0007475512,0.0012998106,0.000022763497,0.00002400844,0.000024605692,0.000018698996,0.00022838726],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99903,0.000030059753,0.00023903596,0.00037755113,0.00003163963,0.00029169078],"domain_scores_gemma":[0.9995626,0.000034997338,0.00008306078,0.00022332146,8.322032e-7,0.000095185314],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009318405,0.00020142313,0.00021364503,0.00003307263,0.00018614077,0.00001346874,0.00017518063,0.00009205732,0.0016938909],"category_scores_gemma":[0.0000014634657,0.0001492758,0.00004127311,0.00006089042,0.0004768307,0.00007742313,0.00042704807,0.00012627163,0.00027150856],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004052167,0.000070389055,0.0034898913,0.00000452421,0.000027436825,0.0000019790882,0.0015027785,0.0000016649936,0.98741883,0.000030720785,0.0003296016,0.0070816614],"study_design_scores_gemma":[0.0005281036,0.00024297765,0.47903383,0.000016767197,0.000075938224,0.00021187447,0.000734122,0.0000033732485,0.40294442,0.00005289693,0.11573384,0.00042188444],"about_ca_topic_score_codex":0.0003738109,"about_ca_topic_score_gemma":0.00011852664,"teacher_disagreement_score":0.58447444,"about_ca_system_score_codex":0.000036021345,"about_ca_system_score_gemma":0.0000020446719,"threshold_uncertainty_score":0.9992187},"labels":[],"label_agreement":null},{"id":"W2125968323","doi":"10.1128/aem.00103-07","title":"Molecular Diversity of Methanogens in Feedlot Cattle from Ontario and Prince Edward Island, Canada","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Anaerobic Digestion and Biogas Production","field":"Engineering","cited_by":187,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Feedlot; Phylotype; 16S ribosomal RNA; Methanogen; Hanwoo; Rhinotermitidae; Botany; Veterinary medicine; Animal science; Gene; Genetics; Bacteria","score_opus":0.002630033554407139,"score_gpt":0.13913175470360184,"score_spread":0.1365017211491947,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125968323","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99900615,0.00021044225,0.00017753473,0.00001768972,0.00006125175,0.00005882823,0.0000405492,0.000005758317,0.00042176613],"genre_scores_gemma":[0.9995727,0.000095743555,0.00016059699,0.00005260532,0.000006751658,6.6150056e-7,0.000083548446,0.0000039254655,0.00002348469],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9996631,0.0000038981575,0.00008569654,0.00012394799,0.000017881312,0.000105477775],"domain_scores_gemma":[0.9998973,0.000008877654,0.0000145588465,0.000050651255,6.7576616e-7,0.000027950427],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000041070714,0.00007018947,0.00009736733,0.000020687668,0.000022353026,0.0000011292709,0.00003033893,0.000052761552,0.00004430263],"category_scores_gemma":[4.3643072e-7,0.00007136317,0.000006461006,0.000017925944,0.0000681649,0.000010738296,0.00007310078,0.000063485786,0.0000012112647],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016638976,0.000015731861,0.07046187,0.0000029738383,0.00002444214,0.0000029659427,0.0003359541,0.000268802,0.9270889,0.0001249195,0.00006529069,0.0015915023],"study_design_scores_gemma":[0.0006202845,0.000026166535,0.6254863,0.0000041259,0.000020374087,0.000014458039,0.00046603574,0.0000027800922,0.35781452,0.00006927457,0.01527637,0.00019929055],"about_ca_topic_score_codex":0.2235893,"about_ca_topic_score_gemma":0.766872,"teacher_disagreement_score":0.56927437,"about_ca_system_score_codex":0.00011493872,"about_ca_system_score_gemma":0.0000074602062,"threshold_uncertainty_score":0.78158087},"labels":[],"label_agreement":null},{"id":"W2125987457","doi":"10.1128/aem.02908-12","title":"Influence of the Vaginal Microbiota on Toxic Shock Syndrome Toxin 1 Production by Staphylococcus aureus","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"Health Research Board","keywords":"Toxic shock syndrome; Staphylococcus aureus; Microbiology; Vaginitis; Biology; Bacterial vaginosis; Lactobacillus; Staphylococcal infections; Vagina; Immunology; Medicine; Bacteria","score_opus":0.003975595292131521,"score_gpt":0.18973874371461755,"score_spread":0.18576314842248604,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125987457","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974658,0.0005551071,0.0000028652164,0.00046898978,0.00019319629,0.0009320484,0.00013195381,0.000024101379,0.00022596195],"genre_scores_gemma":[0.9980416,0.00009814974,0.000016019969,0.00018159018,0.000015089604,0.00011732637,0.00012723933,0.000019411895,0.0013835347],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99850976,0.00015262188,0.0002942935,0.00060486805,0.000028453924,0.00040999975],"domain_scores_gemma":[0.99923086,0.00006831215,0.00013270174,0.00052991236,0.000011859527,0.000026343134],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014722983,0.0002451637,0.0002740969,0.00008752344,0.00024414816,0.000009940983,0.00028080097,0.0002540438,0.0004420817],"category_scores_gemma":[0.000019921066,0.00017711647,0.00005906377,0.00011988607,0.0013295513,0.00007409666,0.00022288512,0.00046460718,0.00072923675],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039233913,0.00031761086,0.0053726854,0.000013488573,0.00009770681,3.7281615e-7,0.00008637023,0.00010318435,0.989204,0.00006127422,0.003849829,0.0008542275],"study_design_scores_gemma":[0.00044325195,0.00025740234,0.16723128,0.00001186833,0.000016859798,0.00022229784,0.00012506262,1.4536984e-7,0.82335573,0.00008303674,0.00807526,0.00017783935],"about_ca_topic_score_codex":0.00010004822,"about_ca_topic_score_gemma":0.0000027661968,"teacher_disagreement_score":0.16584831,"about_ca_system_score_codex":0.00009491067,"about_ca_system_score_gemma":0.00001799008,"threshold_uncertainty_score":0.93731064},"labels":[],"label_agreement":null},{"id":"W2126013327","doi":"10.1128/aem.05246-11","title":"Effect of Light Intensity on the Relative Dominance of Toxigenic and Nontoxigenic Strains of Microcystis aeruginosa","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Aquatic Ecosystems and Phytoplankton Dynamics","field":"Environmental Science","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute; University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Health Canada; University of Ottawa","keywords":"Microcystis aeruginosa; Microcystin; Biology; Toxin; Cyanobacteria; Microcystis; Light intensity; Strain (injury); Dominance (genetics); Microbiology; Limiting; Botany; Gene; Bacteria; Genetics","score_opus":0.0046125844413166086,"score_gpt":0.16467237702539858,"score_spread":0.16005979258408198,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126013327","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971027,0.00012306483,0.00005850993,0.000012624624,0.000031038937,0.00032890652,0.000097972006,0.0000025331412,0.0022426797],"genre_scores_gemma":[0.9996098,0.000117480275,0.00018040709,0.000029048108,0.0000042260212,0.000008488812,0.000010561608,0.0000072651446,0.00003269031],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99924195,0.000064312844,0.00027580094,0.00023093405,0.000039930706,0.00014709981],"domain_scores_gemma":[0.999408,0.00013058484,0.00023570529,0.0001929595,9.767681e-7,0.000031759995],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024434985,0.0001525205,0.000340644,0.00001661201,0.000047143745,9.500641e-7,0.00011875618,0.00010127196,0.00019627609],"category_scores_gemma":[0.0000050945837,0.000100187855,0.00004871112,0.000037387777,0.0007240614,0.000023129553,0.00015894683,0.00009893722,0.0000141849405],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013941612,0.00005563434,0.026560081,0.000030608,0.00003975992,7.2982715e-7,0.0011890782,0.000002423371,0.9693844,0.0011371573,0.000023352033,0.0014373857],"study_design_scores_gemma":[0.0006245115,0.0009936575,0.08213994,0.000031919448,0.000057685138,0.000036839432,0.00027615,0.000026128437,0.9150785,0.0004130659,0.00016648008,0.00015512132],"about_ca_topic_score_codex":0.00011697475,"about_ca_topic_score_gemma":0.000044589313,"teacher_disagreement_score":0.055579863,"about_ca_system_score_codex":0.000028112356,"about_ca_system_score_gemma":0.000002150083,"threshold_uncertainty_score":0.40855423},"labels":[],"label_agreement":null},{"id":"W2126016730","doi":"10.1128/aem.68.1.166-172.2002","title":"Determination of Key Metabolites during Biodegradation of Hexahydro-1,3,5-Trinitro-1,3,5-Triazine with <i>Rhodococcus</i> sp. Strain DN22","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Toxic Organic Pollutants Impact","field":"Environmental Science","cited_by":165,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"Strategic Environmental Research and Development Program; U.S. Department of Defense","keywords":"Biodegradation; Chemistry; Metabolite; Nitrite; Formaldehyde; Strain (injury); Mass spectrometry; Rhodococcus; Chromatography; Nuclear chemistry; Organic chemistry; Nitrate","score_opus":0.005805457003898753,"score_gpt":0.17258005922760528,"score_spread":0.16677460222370652,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126016730","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978336,0.00018248892,0.00015925877,0.000045694407,0.000025294325,0.00027546313,0.00060870516,0.000018529272,0.00085097866],"genre_scores_gemma":[0.99698603,0.00018771473,0.0025929124,0.00004692844,0.000016412141,0.0000068162344,0.00004027877,0.000022059152,0.00010086821],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988007,0.00004766699,0.00037328387,0.0003665684,0.000104837956,0.00030691831],"domain_scores_gemma":[0.9993604,0.00005206989,0.00026548267,0.00023983851,5.526923e-7,0.00008166139],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00012435643,0.00022847657,0.00033880683,0.00006727494,0.00006798748,0.0000057398565,0.00015876465,0.00011617441,0.0016188251],"category_scores_gemma":[0.0000073856936,0.00019092365,0.00004065596,0.0001364543,0.00067481864,0.000121824276,0.00013868642,0.0001071524,0.000059251623],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043819993,0.00013756866,0.007084641,0.000009780099,0.000021054408,0.0000017874675,0.00028608955,0.000009798548,0.9721391,0.000015528924,0.000007717528,0.020243077],"study_design_scores_gemma":[0.001573594,0.00017782947,0.13599704,0.000009296051,0.00005730089,0.000102413054,0.00019677474,0.00007692739,0.8609568,0.00007256962,0.00052128825,0.0002582006],"about_ca_topic_score_codex":0.00001712395,"about_ca_topic_score_gemma":0.000009941905,"teacher_disagreement_score":0.1289124,"about_ca_system_score_codex":0.00007915581,"about_ca_system_score_gemma":0.000002642957,"threshold_uncertainty_score":0.9992938},"labels":[],"label_agreement":null},{"id":"W2126041574","doi":"10.1128/aem.72.3.2287-2289.2006","title":"Recovery of <i>Escherichia coli</i> from Soil after Addition of Sterile Organic Wastes","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Reuse","field":"Environmental Science","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Escherichia coli; Biosolids; Microbiology; Soil microbiology; Most probable number; Bacteria; Sewage; Chemistry; Biology; Food science; Environmental science; Environmental engineering; Biochemistry","score_opus":0.001842119808082735,"score_gpt":0.1326603637562848,"score_spread":0.13081824394820205,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126041574","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981752,0.00014538899,0.000015645219,0.0000189827,0.000047085567,0.00013593167,0.00047603674,0.000008227252,0.0009775065],"genre_scores_gemma":[0.99840814,0.00007913601,0.0005325543,0.00006580608,0.000025914187,0.000017917642,0.00058426,0.000013491477,0.0002727988],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99929225,0.000021795295,0.000227375,0.0002556012,0.000039772094,0.00016320452],"domain_scores_gemma":[0.9996877,0.000026916296,0.000106059306,0.00015104136,4.5027403e-7,0.000027853323],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000028491257,0.00014662313,0.00020860259,0.000016321235,0.000030880852,0.0000035237294,0.000080102145,0.00010389172,0.0031738402],"category_scores_gemma":[3.5460857e-7,0.000121153564,0.00004080775,0.000035930534,0.00039573127,0.000049033257,0.00016537229,0.000046257646,0.000118029675],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009059264,0.00016780915,0.020860061,0.000005268721,0.000021216285,0.0000014297549,0.00007672983,0.000029033577,0.97806406,0.0000033705442,0.00037736856,0.00030304928],"study_design_scores_gemma":[0.00069656456,0.00013710668,0.07252099,0.000008164703,0.000043315016,0.000004122446,0.00013396941,0.0000026835085,0.92434275,0.00035633313,0.0015962056,0.00015777044],"about_ca_topic_score_codex":0.00021975534,"about_ca_topic_score_gemma":0.0000725693,"teacher_disagreement_score":0.0537213,"about_ca_system_score_codex":0.000040211144,"about_ca_system_score_gemma":0.0000019315269,"threshold_uncertainty_score":0.9977374},"labels":[],"label_agreement":null},{"id":"W2126135280","doi":"10.1128/aem.68.8.4035-4043.2002","title":"Microstructure of Anaerobic Granules Bioaugmented with <i>Desulfitobacterium frappieri</i> PCP-1","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Pentachlorophenol; Biofilm; Microbiology; Granule (geology); Strain (injury); Anaerobic exercise; Archaea; Chemistry; Biology; Bacteria; Environmental chemistry","score_opus":0.003942629921971029,"score_gpt":0.14272988042834175,"score_spread":0.13878725050637072,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126135280","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99855095,0.00025135532,0.000011640782,0.000047561014,0.000038706617,0.00030758118,0.00013541951,0.00002301505,0.00063376466],"genre_scores_gemma":[0.99590355,0.00017648804,0.0032391646,0.00017982366,0.000016919763,0.000023690867,0.00020541025,0.00002252339,0.0002324197],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989362,0.000022983695,0.00021472241,0.00042897076,0.00006104262,0.0003361312],"domain_scores_gemma":[0.9995808,0.00001416101,0.00010229488,0.00021668848,7.168179e-7,0.000085320695],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000033853456,0.00027297344,0.00027359417,0.00003274011,0.00010510136,0.000009939337,0.00014261875,0.0001243548,0.0016832283],"category_scores_gemma":[3.1238125e-7,0.00020106068,0.00004609003,0.00008198222,0.0009017252,0.000055437355,0.00015541316,0.000096174175,0.0001684596],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000060304374,0.00013026127,0.015246594,0.0000059668914,0.000050976156,0.0000069913795,0.00018194765,0.0000106441175,0.98174363,0.000010784778,0.00033265297,0.0022192616],"study_design_scores_gemma":[0.0029097428,0.0005392257,0.049902905,0.000012297411,0.00009492922,0.00038674,0.00043647207,0.000018957846,0.9209041,0.00008153959,0.02411035,0.0006027664],"about_ca_topic_score_codex":0.00004111385,"about_ca_topic_score_gemma":0.000012987116,"teacher_disagreement_score":0.06083954,"about_ca_system_score_codex":0.000048455262,"about_ca_system_score_gemma":9.801062e-7,"threshold_uncertainty_score":0.9992294},"labels":[],"label_agreement":null},{"id":"W2126493531","doi":"10.1128/aem.02807-09","title":"Impact of Endochitinase-Transformed White Spruce on Soil Fungal Biomass and Ectendomycorrhizal Symbiosis","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Natural Resources Canada; Canadian Forest Service","funders":"","keywords":"Biology; Mycelium; Botany; Symbiosis; Mycorrhiza; Endophyte; Colonization; Fungus; Root rot; Microbiology; Horticulture; Bacteria","score_opus":0.0030811288494769313,"score_gpt":0.1722190066735556,"score_spread":0.1691378778240787,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126493531","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940106,0.00006724978,8.6500347e-7,0.00012724129,0.00008725841,0.00016343972,0.0038168805,0.0000173035,0.0017091535],"genre_scores_gemma":[0.99806875,0.0002637742,0.000026248308,0.00008638126,0.00007095797,0.00001056385,0.0014231624,0.0000017229984,0.000048424215],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99926835,0.000021495758,0.00015198674,0.00028049338,0.000031532145,0.00024611078],"domain_scores_gemma":[0.99944896,0.0003424293,0.00006256842,0.00004663038,0.0000023812083,0.00009702238],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00005223152,0.0001787666,0.00020485479,0.000019749448,0.00012394761,0.0000132548685,0.00008237012,0.00013991831,0.0022209869],"category_scores_gemma":[0.000005004097,0.00007714976,0.000077838864,0.000047033078,0.0000680415,0.000033064745,0.00004557456,0.00018889236,0.00006819497],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012684731,0.000088155604,0.089931294,0.0000038047872,0.000025528618,0.0000022050085,0.000035475274,3.4160834e-7,0.9051316,0.0001879973,0.00037700063,0.0040897764],"study_design_scores_gemma":[0.0006411997,0.0018494896,0.52794725,0.000022218257,0.00007517596,0.001021847,0.00041245788,0.000017841407,0.4579926,0.00026319837,0.0090925265,0.0006642239],"about_ca_topic_score_codex":0.00021787944,"about_ca_topic_score_gemma":0.000098366385,"teacher_disagreement_score":0.44713897,"about_ca_system_score_codex":0.000010169503,"about_ca_system_score_gemma":0.0000026759728,"threshold_uncertainty_score":0.99869114},"labels":[],"label_agreement":null},{"id":"W2127106828","doi":"10.1128/aem.00668-12","title":"Effects of Nitrogen Dioxide and Anoxia on Global Gene and Protein Expression in Long-Term Continuous Cultures of Nitrosomonas eutropha C91","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Anoxic waters; Chemostat; Biology; Ammonia monooxygenase; Ammonium; Ralstonia; Nitrite reductase; Nitrification; Ammonia; Nitrosomonas europaea; Biochemistry; Environmental chemistry; Food science; Nitrate reductase; Nitrogen; Nitrite; Chemistry; Nitrate; Bacteria; Ecology; Gene; Enzyme","score_opus":0.002692454951668724,"score_gpt":0.18188618738582008,"score_spread":0.17919373243415135,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127106828","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99782014,0.001530191,0.0000049982596,0.0000073573756,0.000016012926,0.00050223595,0.00004392217,0.000005750197,0.00006940064],"genre_scores_gemma":[0.99869746,0.00016293567,0.0009847729,0.000034439203,0.00001485289,0.000028711867,0.00004629701,0.000009745191,0.000020786678],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991424,0.00004997486,0.00019328369,0.00028040787,0.000052325493,0.0002816109],"domain_scores_gemma":[0.9997008,0.000022941575,0.00009285322,0.00009732944,4.3611985e-7,0.00008567208],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005695478,0.00020399857,0.00029011755,0.000021760232,0.000041338357,0.0000037385973,0.00006532892,0.00012092998,0.000029448227],"category_scores_gemma":[0.0000012725102,0.00015603892,0.000027497357,0.000032767235,0.00048851507,0.000055721324,0.00022895038,0.00006296494,0.000008296131],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011402752,0.00019881561,0.34716743,0.000022434157,0.000014595866,0.000004423601,0.00011714827,7.248813e-7,0.6516308,0.000010119236,0.0000045680235,0.0007148708],"study_design_scores_gemma":[0.0009866111,0.00014601396,0.33698207,0.000015902671,0.0000194766,0.000038299906,0.000035289966,2.409583e-7,0.66159153,0.00006645699,0.000019977824,0.00009813366],"about_ca_topic_score_codex":0.000038718626,"about_ca_topic_score_gemma":0.0000050545705,"teacher_disagreement_score":0.010185366,"about_ca_system_score_codex":0.000050163162,"about_ca_system_score_gemma":0.0000011296754,"threshold_uncertainty_score":0.63630825},"labels":[],"label_agreement":null},{"id":"W2127168853","doi":"10.1128/aem.00944-09","title":"Longitudinal Characterization of Resistant <i>Escherichia coli</i> in Fecal Deposits from Cattle Fed Subtherapeutic Levels of Antimicrobials","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lethbridge College; Agriculture and Agri-Food Canada; University of Lethbridge","funders":"","keywords":"Escherichia coli; Feces; Microbiology; Antimicrobial; Biology; Genetics","score_opus":0.016685504299159826,"score_gpt":0.23688441766543747,"score_spread":0.22019891336627764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127168853","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99879414,0.00023930683,0.000020510819,0.00015507087,0.000021109605,0.00032923566,0.00034140467,0.000006522699,0.000092676884],"genre_scores_gemma":[0.9988854,0.0003026117,0.000096335316,0.00015131244,0.000025956702,0.000004551399,0.00049435016,0.000011740333,0.000027763917],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990038,0.00003614392,0.00038222456,0.0002874959,0.000060509516,0.0002297729],"domain_scores_gemma":[0.9996286,0.000037796093,0.000110628156,0.00016164503,0.0000059765853,0.000055356242],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000825344,0.00015092711,0.0004403941,0.00007706575,0.00003000824,0.0000041108283,0.00006793433,0.00015478597,0.00009015691],"category_scores_gemma":[0.0000030676467,0.00014081353,0.000047584188,0.00010098892,0.00020332765,0.000018989316,0.00004271093,0.0001402017,0.0000063933617],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008634862,0.00041489681,0.011178397,0.00003014897,0.00004008833,0.000006337373,0.00012325167,0.0000010113783,0.9855576,0.000016128448,0.0000043616305,0.0017642786],"study_design_scores_gemma":[0.0010023749,0.00025033878,0.41039747,0.000025057594,0.000028292876,0.000009357559,0.000033922333,0.0000022233596,0.58812493,0.000006198464,0.000051867803,0.00006794412],"about_ca_topic_score_codex":0.000053455973,"about_ca_topic_score_gemma":0.000012015762,"teacher_disagreement_score":0.39921907,"about_ca_system_score_codex":0.00006159026,"about_ca_system_score_gemma":0.000028261584,"threshold_uncertainty_score":0.5742209},"labels":[],"label_agreement":null},{"id":"W2127253703","doi":"10.1128/aem.01355-07","title":"Effects of Wildfire and Harvest Disturbances on Forest Soil Bacterial Communities","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fire effects on ecosystems","field":"Environmental Science","cited_by":166,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Canadian Forest Service; University of British Columbia","funders":"","keywords":"Temperature gradient gel electrophoresis; Microbial population biology; Prescribed burn; Biology; Environmental science; Ecology; Agronomy; Botany; 16S ribosomal RNA; Bacteria","score_opus":0.0022692159931824133,"score_gpt":0.15578055021243614,"score_spread":0.15351133421925373,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127253703","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982528,0.00014461442,0.000017186205,0.000015697462,0.00013299534,0.00030049676,0.000027994045,0.000014529594,0.001093655],"genre_scores_gemma":[0.99949586,0.00009766825,0.000062698105,0.00013906168,0.000035898713,0.000012346892,0.000085792475,0.000015394462,0.000055256416],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99922335,0.000044575063,0.00019282186,0.00022740751,0.000047243724,0.00026459928],"domain_scores_gemma":[0.99941546,0.0002748135,0.00009280554,0.00014951844,2.083003e-7,0.00006717128],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017032646,0.00018773202,0.00024263137,0.000024954676,0.00011136749,0.000010122998,0.00011866433,0.000115753595,0.00007458482],"category_scores_gemma":[0.0000027405997,0.0001606346,0.000024189801,0.000027894062,0.00092175376,0.000053231564,0.0002092293,0.00011040616,0.000058279707],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000097870055,0.00011181358,0.09160979,0.000039715553,0.000016555528,0.0000034325492,0.00042603692,0.00000485992,0.9017224,0.000067761335,0.0001327207,0.0057670656],"study_design_scores_gemma":[0.0012115937,0.00047218407,0.8579905,0.000032382475,0.000023644985,0.00004686301,0.00043870125,0.000019121513,0.13172212,0.0000756578,0.0076780375,0.00028920372],"about_ca_topic_score_codex":0.0004898107,"about_ca_topic_score_gemma":0.0006621128,"teacher_disagreement_score":0.7700003,"about_ca_system_score_codex":0.000052150335,"about_ca_system_score_gemma":0.0000010879343,"threshold_uncertainty_score":0.6550489},"labels":[],"label_agreement":null},{"id":"W2127303589","doi":"10.1128/aem.01688-13","title":"X-Ray Absorption Near-Edge Structure (XANES) Spectroscopy Study of the Interaction of Silver Ions with Staphylococcus aureus, Listeria monocytogenes, and Escherichia coli","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Nanoparticles: synthesis and applications","field":"Materials Science","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Light Source (Canada); University of Saskatchewan","funders":"","keywords":"Escherichia coli; XANES; Chemistry; Listeria monocytogenes; Histidine; Nuclear chemistry; Bacteria; Biochemistry; Biology; Amino acid; Spectroscopy","score_opus":0.006777786541777493,"score_gpt":0.19649847588890765,"score_spread":0.18972068934713016,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127303589","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991372,0.00005261474,0.000017420925,0.00003378973,0.000033466877,0.000626631,0.00007816054,0.000006356722,0.00001434698],"genre_scores_gemma":[0.99929065,0.000016505253,0.0005593978,0.000032814492,0.000012764758,0.000058351496,0.000012276043,0.000008941186,0.000008322267],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99937654,0.000041368523,0.00019342036,0.00022958375,0.000034777444,0.0001243423],"domain_scores_gemma":[0.99958557,0.000025883972,0.0001522009,0.00020222232,0.000004055029,0.000030048066],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000418815,0.000116951844,0.00017517825,0.0000141878445,0.00011523145,0.00002027187,0.00009674447,0.00005311096,0.00022827959],"category_scores_gemma":[8.5280533e-7,0.000074936994,0.000014080963,0.000043806867,0.00034034764,0.000045106444,0.0000987739,0.000053567765,0.000007966569],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036617796,0.00017281134,0.0102913175,0.000008245723,0.000013556904,5.3131874e-8,0.0004289306,0.000054026863,0.98877096,0.00005913486,0.00001928621,0.00014508086],"study_design_scores_gemma":[0.00037843263,0.00015128125,0.1402329,0.0000050132885,0.000032437907,0.0000026705675,0.0014895622,0.000018614282,0.8573705,0.00005208703,0.00018639611,0.000080125785],"about_ca_topic_score_codex":0.0001725521,"about_ca_topic_score_gemma":0.000039310486,"teacher_disagreement_score":0.13140047,"about_ca_system_score_codex":0.000023890718,"about_ca_system_score_gemma":0.0000062832464,"threshold_uncertainty_score":0.3055842},"labels":[],"label_agreement":null},{"id":"W2127320820","doi":"10.1128/aem.72.4.2815-2823.2006","title":"Characterization of Intestinal Microbiota and Response to Dietary Virginiamycin Supplementation in the Broiler Chicken","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":236,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Plant Biotechnology Institute; University of Saskatchewan","funders":"","keywords":"Virginiamycin; Cecum; Biology; Ileum; Gastrointestinal tract; Jejunum; Microbiology; Gut flora; Small intestine; Antibiotics; Immunology; Ecology; Biochemistry","score_opus":0.005219590600112764,"score_gpt":0.17184080614528796,"score_spread":0.1666212155451752,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127320820","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986342,0.000027859465,0.0000038408075,0.0007842754,0.000014508993,0.0002481953,0.00022466604,0.00000389446,0.000058543617],"genre_scores_gemma":[0.9984015,0.00003420719,0.000094788316,0.00039816432,0.000024576328,0.000011820615,0.0010134246,8.576853e-7,0.000020646445],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994381,0.000056147157,0.00016571228,0.0001849445,0.000021630867,0.00013346852],"domain_scores_gemma":[0.9998454,0.00005690068,0.000047210036,0.00003174469,0.0000012711361,0.000017500366],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001565717,0.000090828384,0.00010051857,0.0000155176,0.00005758304,0.0000107893065,0.00007448669,0.000052835287,0.00004252252],"category_scores_gemma":[0.0000012800723,0.000039172195,0.000012990526,0.00006428017,0.000102678285,0.000020617532,0.0000699063,0.000057437876,0.0000040347622],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016318548,0.00007669546,0.008148524,0.0000023088505,0.0000025214356,5.972169e-7,0.00015164932,5.881058e-7,0.9875881,0.000049098922,0.00002959131,0.003787159],"study_design_scores_gemma":[0.0002603059,0.00026932193,0.8904481,0.000006312231,0.0000060102375,0.000026236163,0.00037944602,0.0000023563182,0.105188966,0.00005928089,0.0032585422,0.00009515493],"about_ca_topic_score_codex":0.00007213631,"about_ca_topic_score_gemma":0.000078393765,"teacher_disagreement_score":0.88239914,"about_ca_system_score_codex":0.00001229272,"about_ca_system_score_gemma":0.0000011630078,"threshold_uncertainty_score":0.15973958},"labels":[],"label_agreement":null},{"id":"W2127528698","doi":"10.1128/aem.02324-13","title":"Effect of Incubation Temperature on the Detection of Thermophilic Campylobacter Species from Freshwater Beaches, Nearby Wastewater Effluents, and Bird Fecal Droppings","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Environment and Climate Change Canada; Agriculture and Agri-Food Canada","funders":"","keywords":"Campylobacter; Biology; Campylobacter jejuni; Incubation; 16S ribosomal RNA; Feces; Microbiology; Campylobacter coli; Veterinary medicine; Bacteria","score_opus":0.004443024023149642,"score_gpt":0.15040297737117467,"score_spread":0.14595995334802503,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127528698","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990786,0.000186776,2.519381e-7,0.0002395436,0.000043258893,0.00031477655,0.00009478558,0.000011470107,0.000030559084],"genre_scores_gemma":[0.99938625,0.00009066941,0.000004468391,0.00023192653,0.000066559354,0.000027595763,0.00016906606,0.0000023980156,0.000021058942],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991498,0.00017472442,0.00020450284,0.0002658593,0.0000335928,0.00017153074],"domain_scores_gemma":[0.9994387,0.0003594821,0.000099650366,0.00006572738,0.0000026374603,0.000033796972],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014244561,0.00016738925,0.00026188724,0.000010355605,0.000084405656,0.000011414019,0.00009246056,0.00019482046,0.00029452224],"category_scores_gemma":[0.0000054877078,0.000055036035,0.000045116925,0.000031929627,0.0003595951,0.000029646402,0.000090938105,0.00012415466,0.000025537525],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000069318594,0.000024254457,0.03375268,0.0000051879115,0.000026238107,1.2685697e-7,0.000094010655,3.6502246e-7,0.9595959,0.00001363696,0.000028211787,0.0063900715],"study_design_scores_gemma":[0.00019477755,0.0004937677,0.40639815,0.0000069853927,0.000017367933,0.0000062056465,0.0001392377,0.000003629146,0.59179485,0.00018974744,0.00066268945,0.0000925992],"about_ca_topic_score_codex":0.00031007075,"about_ca_topic_score_gemma":0.000053482367,"teacher_disagreement_score":0.37264547,"about_ca_system_score_codex":0.000012978486,"about_ca_system_score_gemma":4.8636235e-7,"threshold_uncertainty_score":0.32248122},"labels":[],"label_agreement":null},{"id":"W2127580717","doi":"10.1128/aem.01293-12","title":"Proteomic Analysis of Survival of Rhodococcus jostii RHA1 during Carbon Starvation","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Genome Canada","keywords":"Rhodococcus; Catabolism; Biochemistry; Chemistry; Enzyme; Metabolism; Monooxygenase; Phthalate; Bacteria; Biology; Cytochrome P450; Organic chemistry; Genetics","score_opus":0.005221529755550321,"score_gpt":0.17980612311212052,"score_spread":0.1745845933565702,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127580717","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99929625,0.00006714427,0.000048563837,0.000003454572,0.00010486964,0.00012372422,0.00007600344,0.0000065520917,0.00027343072],"genre_scores_gemma":[0.9995759,0.000018885652,0.00022969865,0.000008442536,0.000032236043,0.000007659464,0.000105597996,0.0000052109167,0.000016366304],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99944454,0.000029178489,0.00019772824,0.00014280179,0.000031844036,0.00015393236],"domain_scores_gemma":[0.99971485,0.000017250899,0.00013174195,0.00010820325,0.0000019017486,0.000026057587],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012673017,0.00008542244,0.00024008549,0.000075879165,0.000030673047,0.0000017761063,0.00004540283,0.00007465486,0.0001774944],"category_scores_gemma":[0.000001975125,0.00007340468,0.000032875414,0.00007418957,0.00015213313,0.00003217096,0.00005305931,0.000038476042,0.0000034340421],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000045301524,0.000026615362,0.06686407,0.000014572483,0.000054257038,5.2422443e-8,0.00023304916,0.000046393856,0.93253654,0.00010134369,0.0000012147927,0.00007657355],"study_design_scores_gemma":[0.00017820248,0.00002289615,0.25930798,0.0000012065879,0.00012698548,0.00000175959,0.000102658996,0.0000046950067,0.74015945,0.000015637144,0.000021508982,0.000057047462],"about_ca_topic_score_codex":0.000052666597,"about_ca_topic_score_gemma":0.0000058980063,"teacher_disagreement_score":0.1924439,"about_ca_system_score_codex":0.000023302791,"about_ca_system_score_gemma":0.0000024797416,"threshold_uncertainty_score":0.29933557},"labels":[],"label_agreement":null},{"id":"W2127614158","doi":"10.1128/aem.02565-12","title":"Characterization of Two Virulent Phages of Lactobacillus plantarum","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Lactobacillus plantarum; Virulence; Microbiology; Biology; Lactobacillus; Bacteriophage; Bacteria; Virology; Escherichia coli; Genetics; Lactic acid; Gene","score_opus":0.005305441130184503,"score_gpt":0.191428181891087,"score_spread":0.18612274076090252,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127614158","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99804324,0.000041846495,0.00009173292,0.000017830189,0.00011103594,0.00013294691,0.00027517456,0.000006853284,0.00127935],"genre_scores_gemma":[0.9991457,0.00012378235,0.00019920983,0.000111144705,0.000026732709,0.000006664993,0.0002732501,0.000009554129,0.00010396562],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99937606,0.000020249252,0.00021676421,0.00015103855,0.00002715099,0.0002087206],"domain_scores_gemma":[0.99969006,0.00001609238,0.0001286399,0.000111174384,5.34356e-7,0.000053528867],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00006325026,0.00011873228,0.00017825511,0.00002270608,0.000042264583,0.0000023906314,0.00007323175,0.00006333454,0.0018591941],"category_scores_gemma":[6.5420613e-7,0.00010675101,0.000034956218,0.000032171905,0.0003079762,0.000098973185,0.00016222248,0.00006514351,0.000110084744],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002273805,0.00016002935,0.012356959,0.0000064975916,0.000016455886,1.7573788e-7,0.00028431657,0.000001944603,0.9835781,0.000059123387,0.0000257058,0.0034879744],"study_design_scores_gemma":[0.00032886828,0.000042822532,0.15221132,0.000004203194,0.000021956119,0.000042551885,0.000088082124,0.0000019142772,0.8401222,0.000010949055,0.007017579,0.000107549764],"about_ca_topic_score_codex":0.00007401947,"about_ca_topic_score_gemma":0.0000072234457,"teacher_disagreement_score":0.14345588,"about_ca_system_score_codex":0.000039064056,"about_ca_system_score_gemma":0.0000012014668,"threshold_uncertainty_score":0.99905324},"labels":[],"label_agreement":null},{"id":"W2127730490","doi":"10.1128/aem.01445-13","title":"Investigation of Malic Acid Production in Aspergillus oryzae under Nitrogen Starvation Conditions","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":89,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fondation Chalmers; Knut och Alice Wallenbergs Stiftelse","keywords":"Malic acid; Fermentation; Biochemistry; Biology; Aspergillus oryzae; Rhizopus oryzae; Phosphoenolpyruvate carboxylase; Food science; Malic enzyme; Pyruvate carboxylase; Citric acid; Enzyme; Dehydrogenase","score_opus":0.004475184385518805,"score_gpt":0.16303714039751194,"score_spread":0.15856195601199313,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127730490","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992066,0.00020859562,0.00006823466,0.00014011838,0.000080648046,0.00023734849,0.000025602067,0.0000061850624,0.000026665632],"genre_scores_gemma":[0.9983296,0.00017290596,0.0002588802,0.00011721572,0.00007761987,0.00003838168,0.0009448789,0.000009583541,0.000050946124],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99943644,0.000021792148,0.00016396082,0.00024281086,0.000017821872,0.00011714986],"domain_scores_gemma":[0.99980026,0.0000013076411,0.00005415402,0.00011489156,0.0000049795317,0.000024423376],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000062962295,0.00009730716,0.0001002714,0.00005041341,0.000030352197,0.0000034896555,0.000036822537,0.00011284993,0.000025997771],"category_scores_gemma":[0.000003847334,0.00009484413,0.000017395201,0.00004689168,0.00015233543,0.0000059147364,0.000033568405,0.00005286174,0.000010290908],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00000835405,0.00001877867,0.0033266528,0.000009578776,0.000014254011,3.7371773e-8,0.00003474753,0.00009183683,0.9958297,0.00008037815,0.00016580049,0.00041987924],"study_design_scores_gemma":[0.0002298165,0.000048228732,0.025510237,0.0000038119406,0.000007777699,0.000020824533,0.0001411122,0.0000027722344,0.97297615,0.000391438,0.00056729687,0.000100547506],"about_ca_topic_score_codex":0.000031119063,"about_ca_topic_score_gemma":0.0000081846565,"teacher_disagreement_score":0.022853564,"about_ca_system_score_codex":0.000015292448,"about_ca_system_score_gemma":0.000006349578,"threshold_uncertainty_score":0.38676313},"labels":[],"label_agreement":null},{"id":"W2127854361","doi":"10.1128/aem.00391-09","title":"<i>Escherichia coli</i> O157:H7 Strain Origin, Lineage, and Shiga Toxin 2 Expression Affect Colonization of Cattle","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; University of Lethbridge","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; Lineage (genetic); Colonization; Microbiology; Escherichia coli; Shiga toxin; Strain (injury); Virulence; Pathogen; Toxin; Enterobacteriaceae; Gene; Genetics","score_opus":0.005639155409102155,"score_gpt":0.2233163984567171,"score_spread":0.21767724304761496,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127854361","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99772584,0.0011981825,0.0001802831,0.00007839256,0.000024495823,0.00026560613,0.00010910329,0.000007084297,0.00041100563],"genre_scores_gemma":[0.9967609,0.001353457,0.00088894466,0.00039770018,0.000053002972,0.000018366325,0.0003706352,0.000011401283,0.0001455913],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992245,0.000048282596,0.00015197626,0.00032467724,0.0000359038,0.0002146995],"domain_scores_gemma":[0.9997096,0.00001974558,0.00006612501,0.00014003096,0.0000045714705,0.000059911526],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010362991,0.00015657263,0.00018877808,0.000021822629,0.00008443642,0.000007271524,0.00007962988,0.00016021547,0.000012303346],"category_scores_gemma":[0.000009881342,0.00014114172,0.000024986524,0.00003811637,0.00029570743,0.0000033137294,0.00013803801,0.00009028569,0.0000020690056],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008585971,0.00008951084,0.0020693017,0.00001702357,0.000022342138,6.746906e-7,0.00006606837,0.000010001912,0.99615234,0.000059256392,0.00062409317,0.0008035168],"study_design_scores_gemma":[0.00082823256,0.00058568397,0.026946997,0.000008411336,0.000017588567,0.000009551111,0.00016046612,0.000008242926,0.96010226,0.00003092753,0.011116574,0.00018503879],"about_ca_topic_score_codex":0.0000039875686,"about_ca_topic_score_gemma":0.000005330045,"teacher_disagreement_score":0.036050063,"about_ca_system_score_codex":0.000011987506,"about_ca_system_score_gemma":0.000012684773,"threshold_uncertainty_score":0.5755592},"labels":[],"label_agreement":null},{"id":"W2127916279","doi":"10.1128/aem.00564-13","title":"Characterization of Site-Specific Mutations in a Short-Chain-Length/Medium-Chain-Length Polyhydroxyalkanoate Synthase: <i>In Vivo</i> and <i>In Vitro</i> Studies of Enzymatic Activity and Substrate Specificity","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"biodegradable polymer synthesis and properties","field":"Materials Science","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Public Health Agency of Canada","keywords":"Polyhydroxyalkanoates; Biochemistry; Enzyme; Mutant; Chemistry; ATP synthase; Biosynthesis; Mutagenesis; Saturated mutagenesis; Biology; Bacteria; Gene; Genetics","score_opus":0.01348147755999416,"score_gpt":0.1935267610817811,"score_spread":0.18004528352178695,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127916279","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99545187,0.0037224651,0.000008017238,0.00010261259,0.000047508318,0.00038834184,0.00024088679,0.000006876187,0.000031423562],"genre_scores_gemma":[0.99636656,0.003352097,0.000116724696,0.000035191675,0.000010795345,0.000064603664,0.00002858788,0.000012881938,0.0000125616025],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986972,0.00011590458,0.00046081937,0.00039688635,0.00005289027,0.000276266],"domain_scores_gemma":[0.9995247,0.00016618683,0.00011939013,0.0001410466,0.000003872097,0.000044813725],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002673086,0.00021814574,0.00052974327,0.000110108675,0.00005852373,0.000016095792,0.000073727024,0.000121262645,0.000065098226],"category_scores_gemma":[0.0000047415024,0.00018627175,0.00002062764,0.00007381812,0.0007575189,0.00010858096,0.00010785117,0.00010793748,0.000004039595],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012678184,0.00015898087,0.002916564,0.000090895686,0.000009607354,0.000001848533,0.0013841515,0.000002139475,0.9929049,0.000021341977,0.0000017218817,0.0023810815],"study_design_scores_gemma":[0.00043225093,0.000048478203,0.024156408,0.000046399815,0.000010014222,0.00001082439,0.0011243842,0.00006336423,0.9738604,0.000047609195,0.000026253365,0.00017363137],"about_ca_topic_score_codex":0.00023149983,"about_ca_topic_score_gemma":0.00014139882,"teacher_disagreement_score":0.021239845,"about_ca_system_score_codex":0.000035332032,"about_ca_system_score_gemma":0.0000074291183,"threshold_uncertainty_score":0.75959414},"labels":[],"label_agreement":null},{"id":"W2128047456","doi":"10.1128/aem.00376-11","title":"Diversity, Abundance, and Potential Activity of Nitrifying and Nitrate-Reducing Microbial Assemblages in a Subglacial Ecosystem","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":146,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Queen's University","funders":"Biogeoscience Institute, University of Calgary; University of Calgary","keywords":"Nitrification; Nitrate; Nitrogen cycle; Biogeochemical cycle; Ecosystem; Sediment; Microcosm; Environmental chemistry; Mineralization (soil science); Organic matter; Geomicrobiology; Ecology; Environmental science; Chemistry; Nitrogen; Geology; Biology; Microbial ecology; Soil water; Bacteria; Geomorphology","score_opus":0.010602082784237493,"score_gpt":0.1821199397865439,"score_spread":0.1715178570023064,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128047456","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988159,0.000088662746,0.000022900838,0.000012748049,0.000039105256,0.00020775193,0.0000374869,0.0000067772316,0.00076866586],"genre_scores_gemma":[0.9994817,0.0002894347,0.00014086533,0.000031222447,0.000012519299,0.000006126362,0.000010090213,0.00000831518,0.000019759489],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989942,0.00006990243,0.00015549005,0.00038148183,0.00004005239,0.00035890148],"domain_scores_gemma":[0.99971795,0.000028333663,0.00007136476,0.000088182846,5.5493774e-7,0.00009359411],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002079273,0.00014895112,0.00024812092,0.000063157444,0.0002650018,0.000006938078,0.00010801237,0.00014766524,0.00019579797],"category_scores_gemma":[0.0000028645086,0.00014767754,0.00002131056,0.00004734221,0.00059200166,0.0001044332,0.0014394593,0.00016802171,0.000015951638],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011259783,0.0000841782,0.22888024,0.000015348138,0.000011619894,0.000009161926,0.00068172027,0.0000025449149,0.7681934,0.000013117332,0.000011469725,0.0019846107],"study_design_scores_gemma":[0.0014240643,0.0001857542,0.87297535,0.000009445399,0.000020353173,0.00012956082,0.00044075318,0.00003666607,0.124177754,0.0002191549,0.00012584777,0.00025531015],"about_ca_topic_score_codex":0.00086835807,"about_ca_topic_score_gemma":0.000752077,"teacher_disagreement_score":0.6440951,"about_ca_system_score_codex":0.00006290528,"about_ca_system_score_gemma":0.0000042447455,"threshold_uncertainty_score":0.60221153},"labels":[],"label_agreement":null},{"id":"W2128125853","doi":"10.1128/aem.02558-06","title":"Formation of Tellurium Nanocrystals during Anaerobic Growth of Bacteria That Use Te Oxyanions as Respiratory Electron Acceptors","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Selenium in Biological Systems","field":"Nursing","cited_by":213,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"U.S. Geological Survey; National Aeronautics and Space Administration","keywords":"Raman spectroscopy; Tellurium; Electron acceptor; Nanorod; Nanocrystal; Isotopic labeling; Chemistry; Materials science; Electron donor; Analytical Chemistry (journal); Crystallography; Nanotechnology; Chemical engineering; Inorganic chemistry; Environmental chemistry; Photochemistry; Organic chemistry","score_opus":0.01077791304299265,"score_gpt":0.20515703761619417,"score_spread":0.19437912457320153,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128125853","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991039,0.00015759768,0.00003146454,0.000016955955,0.00015315051,0.0003602138,0.000053158277,0.000025880086,0.000097658965],"genre_scores_gemma":[0.9994391,0.000035388995,0.0001424226,0.00015106857,0.00004341427,0.0000083450395,0.00014975351,0.000018835966,0.00001165111],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99876636,0.0000716838,0.00046004535,0.0002883476,0.000049569844,0.0003640032],"domain_scores_gemma":[0.9993209,0.00013954971,0.00030413,0.00017156893,0.000004401299,0.00005941988],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022375103,0.00019427776,0.00032329778,0.000101663834,0.00008750455,0.0000074740383,0.00012700225,0.000257634,0.00006979633],"category_scores_gemma":[0.000011079005,0.00016789953,0.0000601033,0.000072174575,0.00031555083,0.00011307147,0.00009610123,0.00012332192,0.00001441384],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003131599,0.00007161201,0.016599637,0.00004420494,0.000017983868,3.1351627e-7,0.00022296219,9.676154e-7,0.9824327,0.000087380926,0.000035912435,0.0001731557],"study_design_scores_gemma":[0.00051457883,0.00023616484,0.10570712,0.000012676194,0.000017997188,0.000031409803,0.00036539612,2.1686022e-7,0.8917264,0.00003619754,0.001201439,0.00015043751],"about_ca_topic_score_codex":0.00005535428,"about_ca_topic_score_gemma":0.000011140613,"teacher_disagreement_score":0.09070633,"about_ca_system_score_codex":0.000119948716,"about_ca_system_score_gemma":0.000002811705,"threshold_uncertainty_score":0.68467444},"labels":[],"label_agreement":null},{"id":"W2128434644","doi":"10.1128/aem.02297-09","title":"Type II Diacylglycerol Acyltransferase from<i>Claviceps purpurea</i>with Ricinoleic Acid, a Hydroxyl Fatty Acid of Industrial Importance, as Preferred Substrate","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Lipid metabolism and biosynthesis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Plant Biotechnology Institute; University of Saskatchewan","funders":"","keywords":"Ricinoleic acid; Claviceps purpurea; Biochemistry; Biology; Linoleic acid; Fatty acid; Oleic acid; Thioesterase; Acyltransferase; Biosynthesis; Enzyme; Castor oil","score_opus":0.006113609494218116,"score_gpt":0.18059621298103687,"score_spread":0.17448260348681877,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128434644","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99759996,0.0011406775,0.000022967755,0.000049899856,0.000072603536,0.00032698092,0.00025393663,0.000013127537,0.00051985163],"genre_scores_gemma":[0.99683386,0.000542456,0.0002723815,0.00048489336,0.00021374751,0.0000150877,0.0015801819,0.000021798127,0.000035603836],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99867344,0.0000390133,0.00031578296,0.00056587125,0.000060654464,0.00034522903],"domain_scores_gemma":[0.99940616,0.0000075322887,0.00012623162,0.00034243593,0.0000055984046,0.00011201817],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00007162594,0.00031786537,0.0003813998,0.000038133465,0.00011027704,0.000009537204,0.00019683952,0.00039335125,0.00009986083],"category_scores_gemma":[0.0000037923687,0.00024987725,0.00006319964,0.00006501969,0.00025763712,0.0000074785894,0.00008207209,0.00015728187,0.00001556181],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010058612,0.00023497085,0.005670272,0.0000039562046,0.00011101662,0.0000032068842,0.00009560385,0.0000017106341,0.98629266,0.000015687068,0.00008072417,0.006484311],"study_design_scores_gemma":[0.0019938783,0.0007265448,0.01044825,0.000007920646,0.00010004357,0.000029176148,0.000117092306,3.9023243e-7,0.979866,0.000037312842,0.006369745,0.00030363543],"about_ca_topic_score_codex":0.00002221247,"about_ca_topic_score_gemma":0.00001473089,"teacher_disagreement_score":0.006426669,"about_ca_system_score_codex":0.000011445172,"about_ca_system_score_gemma":0.00003480629,"threshold_uncertainty_score":0.99999535},"labels":[],"label_agreement":null},{"id":"W2128519370","doi":"10.1128/aem.03462-12","title":"Legionella pneumophila Transcriptional Response following Exposure to CuO Nanoparticles","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Legionella pneumophila; Microbiology; Virulence; Gene; Bacteria; Biology; Gene expression; Transcriptome; Transcription (linguistics); Real-time polymerase chain reaction; Microarray; Legionella; Molecular biology; Chemistry; Biochemistry; Genetics","score_opus":0.005658654596448696,"score_gpt":0.19708044580527656,"score_spread":0.19142179120882785,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128519370","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981632,0.00039952947,0.000040392202,0.00083289586,0.000066252,0.0002933007,0.000025457224,0.000009076118,0.00016988708],"genre_scores_gemma":[0.99775004,0.00008115961,0.00020474925,0.0010626073,0.000082044375,0.00008465766,0.00015737936,0.000019385781,0.00055795815],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990315,0.00005187929,0.00014995073,0.0003926589,0.000047374117,0.00032665793],"domain_scores_gemma":[0.9996483,0.000016198597,0.000020025125,0.00017442733,0.0000029727105,0.00013808862],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011953483,0.00015409297,0.00012909852,0.000037968624,0.00012979125,0.000021491667,0.00012274337,0.00013921481,0.000046156245],"category_scores_gemma":[0.0000044458175,0.00013963037,0.00006180312,0.00003511854,0.00014770239,0.0000044656717,0.00012636576,0.00007854686,0.00020545389],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018052029,0.000054798267,0.0016874195,0.00000285945,0.000031123425,0.000003006101,0.00008945305,0.000014510924,0.9959509,0.000044976743,0.0009967774,0.00094369915],"study_design_scores_gemma":[0.0009851793,0.0005124122,0.028567065,0.0000048027055,0.000012362472,0.000083186984,0.0004902294,0.0000034086188,0.9156445,0.000108971006,0.05326567,0.0003221927],"about_ca_topic_score_codex":0.000011428472,"about_ca_topic_score_gemma":0.0000022925065,"teacher_disagreement_score":0.08030634,"about_ca_system_score_codex":0.0000156935,"about_ca_system_score_gemma":0.000012885153,"threshold_uncertainty_score":0.56939614},"labels":[],"label_agreement":null},{"id":"W2128887055","doi":"10.1128/aem.01111-10","title":"Antimicrobial Resistance in Generic<i>Escherichia coli</i>Isolates from Wild Small Mammals Living in Swine Farm, Residential, Landfill, and Natural Environments in Southern Ontario, Canada","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":116,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; University of Guelph","funders":"Public Health Agency of Canada","keywords":"Biology; Salmonella enterica; Escherichia coli; Antibiotic resistance; Feces; Salmonella; Tetracycline; Microbiology; Antimicrobial; Bacteria; Serotype; Veterinary medicine; Amp resistance; Ampicillin; Disease reservoir; Streptomycin; Antibiotics; Gene; Virology; Genetics","score_opus":0.00527352033272635,"score_gpt":0.17628891518937728,"score_spread":0.17101539485665093,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128887055","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986132,0.00028027984,0.0000027786637,0.0001722226,0.00013723987,0.00034906509,0.00011655863,0.000007891306,0.0003207632],"genre_scores_gemma":[0.9970645,0.00023881807,0.0006206027,0.001344113,0.000029437035,0.0000117222235,0.000115636896,0.00003146261,0.00054376276],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9978575,0.00007634632,0.000469053,0.0008088442,0.0000880573,0.0007001704],"domain_scores_gemma":[0.9994016,0.000102666985,0.00010864995,0.00021330452,2.2443575e-7,0.00017353098],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00018302795,0.00039246483,0.00042014415,0.000055027976,0.000093722476,0.000028938382,0.00023619024,0.00021952933,0.00074826233],"category_scores_gemma":[0.0000065463273,0.00038321453,0.000028487284,0.00009225645,0.00057655317,0.00009233881,0.00054653734,0.0007143853,0.000043039392],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005448314,0.00012239325,0.39020196,0.0000046505984,0.0000069789075,0.00003476062,0.000517371,0.000028021495,0.6087327,0.0000021113194,0.00003901417,0.00025555675],"study_design_scores_gemma":[0.001541245,0.000022844715,0.96433675,0.000043296044,0.000015456504,0.000019251427,0.0003919145,0.000050922295,0.028277732,0.00006956777,0.0046816603,0.00054936507],"about_ca_topic_score_codex":0.5741044,"about_ca_topic_score_gemma":0.97579384,"teacher_disagreement_score":0.58045495,"about_ca_system_score_codex":0.00044116902,"about_ca_system_score_gemma":0.000021255135,"threshold_uncertainty_score":0.99986196},"labels":[],"label_agreement":null},{"id":"W2129258371","doi":"10.1128/aem.67.9.4256-4263.2001","title":"Molecular and Biochemical Analysis of Two β-Galactosidases from<i>Bifidobacterium infantis</i>HL96","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Terminator (solar); Biology; Gene; Molecular biology; Biochemistry; Molecular mass; Nucleic acid sequence; Peptide sequence; Coding region; Promoter; Open reading frame; Amino acid; Genetics; Enzyme; Gene expression","score_opus":0.0027397374259222266,"score_gpt":0.18604255888566085,"score_spread":0.1833028214597386,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129258371","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99857944,0.00053741067,0.0004604693,0.00006065875,0.00002902413,0.00007335842,0.0001594693,0.000005504994,0.00009467329],"genre_scores_gemma":[0.99533933,0.0007709522,0.00017718466,0.0003654384,0.000040434144,0.0000069646867,0.0032651494,0.000009936317,0.000024618654],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99932885,0.000020934289,0.00016156839,0.0003428925,0.000021872633,0.00012385308],"domain_scores_gemma":[0.9997127,0.0000058963933,0.000071728755,0.00016053194,0.0000032114942,0.000045897803],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000320955,0.00012546977,0.00018586272,0.00005290244,0.00002949824,0.0000066845723,0.00005144217,0.0001119765,0.00006706645],"category_scores_gemma":[0.0000027249016,0.00012353738,0.000042501637,0.00006828074,0.00021354594,0.0000028036247,0.00010739155,0.00004454781,0.0000022707895],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004583071,0.000048521404,0.034875058,0.000002803372,0.00022579901,7.525629e-7,0.000024654011,0.0000061244823,0.9642014,0.00003069857,0.000035802503,0.0005025682],"study_design_scores_gemma":[0.00040680994,0.000044460052,0.03730432,0.000001537275,0.00017763817,0.000017334061,0.000043813026,0.000008860927,0.95758367,0.000018300721,0.0042577726,0.00013545908],"about_ca_topic_score_codex":0.000017538152,"about_ca_topic_score_gemma":0.0000028218635,"teacher_disagreement_score":0.0066176914,"about_ca_system_score_codex":0.000004480178,"about_ca_system_score_gemma":0.0000031735806,"threshold_uncertainty_score":0.5037708},"labels":[],"label_agreement":null},{"id":"W2129323832","doi":"10.1128/aem.70.1.363-369.2004","title":"Saturable, Energy-Dependent Uptake of Phenanthrene in Aqueous Phase by <i>Mycobacterium</i> sp. Strain RJGII-135","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Phenanthrene; Chemistry; Saturation (graph theory); Biophysics; Cyanide; Aqueous two-phase system; Kinetics; Efflux; Strain (injury); Nuclear chemistry; Biochemistry; Aqueous solution; Chromatography; Biology; Environmental chemistry; Inorganic chemistry; Organic chemistry","score_opus":0.0033795265725006206,"score_gpt":0.17698181850557196,"score_spread":0.17360229193307133,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129323832","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99721205,0.00033225023,0.000056694415,0.00008348268,0.00008873635,0.00019685412,0.0012410895,0.000015852376,0.00077299244],"genre_scores_gemma":[0.9973006,0.00091740355,0.00025020965,0.000556091,0.00001656797,0.0000066999714,0.0008630118,0.000017392771,0.000072003546],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985884,0.000027503234,0.00042324638,0.0004859001,0.00007861005,0.0003963354],"domain_scores_gemma":[0.9995524,0.000013285271,0.00014541301,0.00018028953,7.3903925e-7,0.00010784055],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00012297256,0.00025646156,0.00029695014,0.000036466896,0.000058734047,0.000009565055,0.00017569616,0.00020482199,0.0010437907],"category_scores_gemma":[0.0000018222911,0.00022848879,0.00004333915,0.000085366235,0.0004210443,0.0000630335,0.0001751125,0.00013312907,0.00009161651],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007630624,0.0004686015,0.0011691467,0.000004646902,0.000010847278,0.000005546201,0.0002075218,0.00003808913,0.9810412,0.000045612036,0.00019752096,0.01673494],"study_design_scores_gemma":[0.005897062,0.00029829578,0.003747586,0.0000137283005,0.000024439838,0.0000649648,0.0005934766,0.0000050556396,0.96972084,0.00027501065,0.018861996,0.0004975176],"about_ca_topic_score_codex":0.00034084189,"about_ca_topic_score_gemma":0.00023145213,"teacher_disagreement_score":0.018664474,"about_ca_system_score_codex":0.00017325381,"about_ca_system_score_gemma":0.000008373531,"threshold_uncertainty_score":0.9998694},"labels":[],"label_agreement":null},{"id":"W2129475106","doi":"10.1128/aem.02024-08","title":"Identification of Freshwater <i>Phycodnaviridae</i> and Their Potential Phytoplankton Hosts, Using DNA <i>pol</i> Sequence Fragments and a Genetic-Distance Analysis","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Phylogenetic tree; Phytoplankton; Monophyly; Host (biology); Environmental DNA; DNA sequencing; Phylogenetics; Zoology; Ecology; DNA; Gene; Genetics; Biodiversity; Clade","score_opus":0.006696866111367961,"score_gpt":0.1896048807843245,"score_spread":0.18290801467295653,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129475106","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976488,0.00025186397,0.0013028511,0.000021689111,0.00004631537,0.0001686181,0.00049968634,0.000008759516,0.000051424704],"genre_scores_gemma":[0.9982304,0.00079719926,0.00059188926,0.00014864447,0.000016408336,0.000008134017,0.00013349173,0.000011908687,0.00006191541],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989939,0.000029500228,0.00028527784,0.00043918105,0.00003504174,0.00021715017],"domain_scores_gemma":[0.9995964,0.000012817527,0.00015190826,0.00017058234,0.0000015909675,0.00006665934],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004426991,0.0001903365,0.00025149612,0.000043653632,0.0002128882,0.000015660547,0.00008478851,0.00009736123,0.00023128134],"category_scores_gemma":[7.3173834e-7,0.00016799296,0.00004687572,0.00008375406,0.0008859667,0.00009743682,0.00020923442,0.00008998852,0.000011383279],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023818382,0.0000534108,0.013196741,0.0000064092387,0.00007486406,0.0000034544244,0.00029808815,0.00007647465,0.9852696,0.0000026544494,0.000030210753,0.0009642931],"study_design_scores_gemma":[0.0007265334,0.00007604868,0.27247098,0.0000075289486,0.00024997393,0.0006590258,0.00032091013,0.00079393946,0.72067803,0.000062200685,0.0035207665,0.0004340816],"about_ca_topic_score_codex":0.00013855638,"about_ca_topic_score_gemma":0.00006007535,"teacher_disagreement_score":0.26459157,"about_ca_system_score_codex":0.000048748727,"about_ca_system_score_gemma":0.0000024490612,"threshold_uncertainty_score":0.6850554},"labels":[],"label_agreement":null},{"id":"W2129577900","doi":"10.1128/aem.00508-11","title":"Significant Alteration of Gene Expression in Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium by Plant Species","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":121,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Office of Science; Great Lakes Bioenergy Research Center; Joint Genome Institute; U.S. Department of Agriculture; U.S. Department of Energy","keywords":"Phanerochaete; Chrysosporium; Biology; Botany; Glycoside hydrolase; Gene; Lignin; Woody plant; Extracellular; Cellulase; Cellulose; Biochemistry","score_opus":0.006326178328695298,"score_gpt":0.1416963744063203,"score_spread":0.135370196077625,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129577900","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984493,0.0008319559,0.0001304088,0.000009139822,0.00009183331,0.00013396595,0.0001452297,0.000015943051,0.0001921978],"genre_scores_gemma":[0.9980529,0.0012132695,0.0002888303,0.000030719748,0.000018638906,0.000004819944,0.000354881,0.000008248037,0.00002771207],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99953437,0.000009142701,0.00013799455,0.00017938812,0.000017973585,0.00012110475],"domain_scores_gemma":[0.9998691,0.000005739361,0.000026625037,0.0000663604,6.197763e-7,0.0000315409],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000037450307,0.000108213855,0.00011970168,0.00003792737,0.000022011827,0.0000026247574,0.000035414436,0.00009169984,0.00007760692],"category_scores_gemma":[1.6871722e-7,0.00009565669,0.000009128957,0.000016980091,0.000100026075,0.000030049807,0.000032368593,0.00006487613,0.0000053220947],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051579027,0.000035251505,0.0014065822,0.00002653036,0.0000070583687,9.3847535e-7,0.00041212438,0.000004945041,0.99751097,0.00000854563,0.00026094558,0.00027450285],"study_design_scores_gemma":[0.00045219506,0.000050850747,0.0031737753,0.000006014009,0.0000055120618,0.000019382298,0.00031915202,0.000022983086,0.9936396,0.0000047990798,0.002196523,0.00010919785],"about_ca_topic_score_codex":0.0000056449717,"about_ca_topic_score_gemma":9.0461043e-7,"teacher_disagreement_score":0.003871381,"about_ca_system_score_codex":0.000018678616,"about_ca_system_score_gemma":0.0000010671158,"threshold_uncertainty_score":0.39007664},"labels":[],"label_agreement":null},{"id":"W2129620590","doi":"10.1128/aem.01783-14","title":"Effect of Lineage-Specific Metabolic Traits of Lactobacillus reuteri on Sourdough Microbial Ecology","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Science Council; Canada Research Chairs","keywords":"Lactobacillus reuteri; Biology; Microbial ecology; Ecology; Microbial population biology; Lactobacillus; Microbiology; Bacteria; Zoology; Genetics","score_opus":0.004149812542279145,"score_gpt":0.16291572120652562,"score_spread":0.15876590866424647,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129620590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987759,0.00016266774,0.000004872904,0.00006240058,0.00008112905,0.00021732716,0.0002245439,0.000010611434,0.00046055843],"genre_scores_gemma":[0.99921525,0.00024057242,0.00006952522,0.0001499204,0.00008202209,0.000007125407,0.00021072186,0.0000020421105,0.000022816108],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99903536,0.000110600886,0.00026872475,0.00031096255,0.000031559222,0.00024280921],"domain_scores_gemma":[0.9995605,0.0001853454,0.00013906207,0.00006284385,0.0000023339721,0.000049953873],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021415761,0.00018692696,0.00042183074,0.000017365515,0.00006302926,0.0000045133797,0.00015704357,0.00020037881,0.00014069419],"category_scores_gemma":[0.0000033167,0.00008157493,0.0000825225,0.000053066342,0.00032869395,0.0000129523905,0.00010504759,0.000115380775,0.000020004092],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018441344,0.000109871995,0.0006112374,0.000010000737,0.000025730675,3.2429534e-7,0.000030379671,0.0000030208473,0.9560213,0.0006051025,0.00005426566,0.04234436],"study_design_scores_gemma":[0.000853062,0.0024872085,0.03444003,0.000007984535,0.000029501327,0.00001847601,0.000032711054,0.0000038678286,0.92708975,0.000049915834,0.0348053,0.0001822076],"about_ca_topic_score_codex":0.000006132441,"about_ca_topic_score_gemma":0.000006330602,"teacher_disagreement_score":0.042162154,"about_ca_system_score_codex":0.0000097071725,"about_ca_system_score_gemma":0.0000011035887,"threshold_uncertainty_score":0.3326529},"labels":[],"label_agreement":null},{"id":"W2129642533","doi":"10.1128/aem.03182-12","title":"Syringyl-Rich Lignin Renders Poplars More Resistant to Degradation by Wood Decay Fungi","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Lignin and Wood Chemistry","field":"Engineering","cited_by":144,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Lignin; Degradation (telecommunications); Salicaceae; Botany; Biology; Woody plant; Chemistry","score_opus":0.002478041939063519,"score_gpt":0.14886141886896712,"score_spread":0.1463833769299036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129642533","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964109,0.0006253782,0.000040500887,0.0000867205,0.00005653335,0.00018529473,0.00007744383,0.00007969643,0.0024375464],"genre_scores_gemma":[0.9983263,0.00016134106,0.0004226826,0.00024730174,0.000025628855,0.000057982543,0.00042986884,0.000028771003,0.00030010194],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992599,0.0000055232913,0.0001594647,0.0002576794,0.000031843054,0.00028558978],"domain_scores_gemma":[0.9997073,0.000017229946,0.000019213843,0.00014875767,0.0000010444057,0.000106456806],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00002824406,0.00018437856,0.00015110837,0.000028167671,0.00005618483,0.00001751297,0.00009637963,0.00014677511,0.000058309422],"category_scores_gemma":[4.7454125e-7,0.00018127014,0.000020386211,0.00004122893,0.00006324823,0.00003498606,0.00006250059,0.00010861596,0.00017602793],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000026752775,0.000017136636,0.00019018743,0.000014678012,0.000029416744,7.7262507e-7,0.000116586954,0.000024492807,0.9571028,0.000015972892,0.04170844,0.0007768689],"study_design_scores_gemma":[0.00027494028,0.000024595014,0.00035694856,0.000005750845,0.000012327319,0.000014430538,0.0006132694,0.000010303,0.9905474,0.000022067548,0.007877933,0.00024001324],"about_ca_topic_score_codex":0.0000098350165,"about_ca_topic_score_gemma":0.0000013694765,"teacher_disagreement_score":0.03383051,"about_ca_system_score_codex":0.000070987044,"about_ca_system_score_gemma":0.000002034204,"threshold_uncertainty_score":0.73919815},"labels":[],"label_agreement":null},{"id":"W2129740903","doi":"10.1128/aem.69.9.5255-5262.2003","title":"Nitrilotriacetate Stimulation of Anaerobic Fe(III) Respiration by Mobilization of Humic Materials in Soil","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Chemistry; Humic acid; Nitrilotriacetic acid; Environmental chemistry; Chelation; Biostimulation; Soil water; Mineralization (soil science); Extraction (chemistry); Nuclear chemistry; Inorganic chemistry; Bioremediation; Chromatography; Organic chemistry; Bacteria","score_opus":0.00496659786936619,"score_gpt":0.1776874079020259,"score_spread":0.1727208100326597,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129740903","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990939,0.000090205875,0.00012952922,0.0000063707967,0.000046853827,0.00032831603,0.00007386725,0.0000046036416,0.00022633745],"genre_scores_gemma":[0.9989093,0.0002321127,0.0002305104,0.00003936899,0.0000057631946,0.000008724869,0.00052888016,0.000009111814,0.000036260768],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990719,0.0000779076,0.00040205088,0.00025225303,0.000046436595,0.00014944834],"domain_scores_gemma":[0.9996434,0.000023046892,0.0002031281,0.0001049075,0.0000012526264,0.000024297737],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000249695,0.00012169918,0.0002136652,0.00004533613,0.000031996562,0.000003662235,0.000055790788,0.00012481054,0.00063664705],"category_scores_gemma":[0.0000045436773,0.00011609293,0.00001862556,0.00009478166,0.00025816268,0.000060813712,0.000043425665,0.00004282151,0.000018914987],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049492184,0.00009636697,0.0073960647,0.000013164496,0.0000040017508,1.1399265e-7,0.00014651731,0.0009938522,0.9907369,0.000055121407,0.000116643765,0.00039175263],"study_design_scores_gemma":[0.00097246194,0.00009378067,0.0067853043,0.0000048528987,0.000010720285,0.0000022879037,0.00009430607,0.00003416913,0.9910055,0.0001380339,0.0007403765,0.00011819827],"about_ca_topic_score_codex":0.0001639241,"about_ca_topic_score_gemma":0.000047235593,"teacher_disagreement_score":0.00095968304,"about_ca_system_score_codex":0.00006706921,"about_ca_system_score_gemma":0.0000036378765,"threshold_uncertainty_score":0.6970839},"labels":[],"label_agreement":null},{"id":"W2129945125","doi":"10.1128/aem.72.1.212-220.2006","title":"Structure and Function of Bacterial Communities Emerging from Different Sources under Identical Conditions","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":186,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Montréal","funders":"","keywords":"Terminal restriction fragment length polymorphism; Biology; Metacommunity; Ecology; Community structure; Biomass (ecology); Bacteria; Microbial population biology; Habitat; Restriction fragment length polymorphism; Hydrobiology; Gene; Biological dispersal; Genetics; Aquatic environment; Polymerase chain reaction","score_opus":0.003933597990659782,"score_gpt":0.16864035997438326,"score_spread":0.16470676198372347,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129945125","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99907774,0.00006902564,0.000046562363,0.00003953646,0.000082764804,0.000097988705,0.00032285278,0.00001026886,0.00025325915],"genre_scores_gemma":[0.9968572,0.000034175813,0.00005876207,0.00017932088,0.000035485507,0.0000037600025,0.0027941968,0.000008070485,0.000028982413],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99935144,0.00010298669,0.00019505012,0.0001612742,0.00002076759,0.00016849118],"domain_scores_gemma":[0.9996485,0.00010736958,0.00007811625,0.0001363999,5.0090574e-7,0.000029075632],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000033572625,0.00014610404,0.00021087189,0.000021507605,0.00022481692,0.000007539432,0.00009585062,0.0001570001,0.0073224003],"category_scores_gemma":[4.7506396e-7,0.0001313503,0.000023881716,0.000016782691,0.0012210013,0.00003843489,0.00034383865,0.00016661327,0.000019960795],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048648217,0.000067731664,0.03220484,0.0000030563604,0.000024768991,1.7314024e-7,0.00022404814,0.000061566505,0.9664645,0.00048950175,0.00024459654,0.00016653733],"study_design_scores_gemma":[0.0009645935,0.00014620982,0.9119922,0.000004957441,0.00008338526,0.000020467643,0.0016204045,0.000014837191,0.063470885,0.018714651,0.0026973565,0.0002700312],"about_ca_topic_score_codex":0.0006936521,"about_ca_topic_score_gemma":0.0014593458,"teacher_disagreement_score":0.9029936,"about_ca_system_score_codex":0.000024728064,"about_ca_system_score_gemma":0.0000012238352,"threshold_uncertainty_score":0.99358505},"labels":[],"label_agreement":null},{"id":"W2129954361","doi":"10.1128/aem.00325-09","title":"Calcium Oxalate Biomineralization by <i>Piloderma fallax</i> in Response to Various Levels of Calcium and Phosphorus","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Northern British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; University of Northern British Columbia","keywords":"Calcium oxalate; Calcium; Biomineralization; Oxalate; Phosphorus; Chemistry; Dissolution; Hypha; Botany; Inorganic chemistry; Biology; Organic chemistry","score_opus":0.0077249692765810705,"score_gpt":0.19211228736443878,"score_spread":0.18438731808785772,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129954361","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99677455,0.00040893067,0.000026523063,0.0005760137,0.00003476235,0.00018034346,0.0018171171,0.000009133043,0.00017264078],"genre_scores_gemma":[0.99790424,0.00023721087,0.00006722682,0.000977353,0.000012230095,0.0000055929145,0.0006816851,9.095743e-7,0.00011353318],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993304,0.000039704883,0.0001823984,0.00023956211,0.00002444989,0.00018349943],"domain_scores_gemma":[0.9996833,0.00017359231,0.00004294375,0.000033149103,0.0000017632149,0.00006524982],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008813952,0.00012020727,0.00016523257,0.000018437966,0.000056738198,0.000009296515,0.000060760765,0.00010695913,0.00021038279],"category_scores_gemma":[0.0000052811347,0.00006151029,0.000017745775,0.00007429085,0.000023425146,0.00002707915,0.00004187421,0.000066176806,0.000025318512],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002818627,0.00006631633,0.0046312697,0.0000011695872,0.0000034973966,0.0000015522922,0.00009684935,0.0000035756623,0.98499984,0.00005949615,0.0008519111,0.009002673],"study_design_scores_gemma":[0.0005468002,0.0010528478,0.35322058,0.000027433533,0.000020801617,0.00013779728,0.00035515963,0.000042530686,0.51864403,0.00046593932,0.124949425,0.00053665024],"about_ca_topic_score_codex":0.0002693057,"about_ca_topic_score_gemma":0.000021907033,"teacher_disagreement_score":0.4663558,"about_ca_system_score_codex":0.000017863264,"about_ca_system_score_gemma":0.000001538461,"threshold_uncertainty_score":0.2508317},"labels":[],"label_agreement":null},{"id":"W2130114112","doi":"10.1128/aem.02002-06","title":"Bestowing Inducibility on the Cloned Methanol Dehydrogenase Promoter (P <i> <sub>mxaF</sub> </i> ) of <i>Methylobacterium extorquens</i> by Applying Regulatory Elements of <i>Pseudomonas putida</i> F1","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"","keywords":"Operon; Biology; Pseudomonas putida; Molecular biology; Gene; Repressor; Plasmid; Expression vector; Transposable element; Shuttle vector; Reporter gene; Promoter; Gene expression; Genetics; Vector (molecular biology); Recombinant DNA; Escherichia coli; Mutant","score_opus":0.003445962455906983,"score_gpt":0.16390983704016815,"score_spread":0.16046387458426117,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130114112","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982035,0.00065842975,0.000100224606,0.00003617676,0.00010252051,0.00062276446,0.00020105648,0.00001002455,0.000065297136],"genre_scores_gemma":[0.99864537,0.0001497177,0.00023135611,0.00019161662,0.00011335189,0.000067917776,0.00054692844,0.000027797969,0.000025951307],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985683,0.000083874766,0.0004419233,0.0005540886,0.00006688924,0.00028491882],"domain_scores_gemma":[0.9992676,0.0000123001455,0.00021327083,0.000458163,0.000007786782,0.000040898674],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040551636,0.00026192787,0.0002947731,0.0000345723,0.000078610065,0.000005476272,0.00014664952,0.00022953966,0.0000061573082],"category_scores_gemma":[0.000007684789,0.00020979406,0.00009051426,0.00006135021,0.00036497813,0.000004390028,0.00014430728,0.00013545509,0.000002948499],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000085598425,0.00020646473,0.0005070236,0.000035481575,0.000062502615,3.227836e-7,0.000021174668,0.00002249093,0.997396,0.000040472845,0.00037552923,0.0012469338],"study_design_scores_gemma":[0.0004992589,0.00014888203,0.00053905905,0.0000118970665,0.000037952097,0.000021546233,0.000037245933,0.0000011289244,0.99349344,0.0000351466,0.0049753347,0.00019911827],"about_ca_topic_score_codex":0.000022275142,"about_ca_topic_score_gemma":0.0000022627296,"teacher_disagreement_score":0.004599806,"about_ca_system_score_codex":0.000021790787,"about_ca_system_score_gemma":0.000011359825,"threshold_uncertainty_score":0.85551536},"labels":[],"label_agreement":null},{"id":"W2130126775","doi":"10.1128/aem.70.4.2044-2051.2004","title":"<i>Tri1</i> in <i>Fusarium graminearum</i> Encodes a P450 Oxygenase","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycotoxins in Agriculture and Food","field":"Agricultural and Biological Sciences","cited_by":137,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"U.S. Department of Agriculture","keywords":"Trichothecene; Gibberella zeae; Biology; Mycotoxin; Cytochrome P450; Gene; Fusarium; Vomitoxin; Complementary DNA; Genetics; Microbiology; Botany; Biochemistry; Enzyme; Zearalenone","score_opus":0.003371263936789075,"score_gpt":0.1404442604570882,"score_spread":0.1370729965202991,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130126775","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974628,0.0004177395,0.0000030610136,0.0003805294,0.000043970547,0.00022884054,0.00019455448,0.000029373963,0.0012391241],"genre_scores_gemma":[0.99733496,0.0003657128,0.00014917109,0.001169898,0.000095964766,0.000032402302,0.0007986136,0.000001350995,0.000051932522],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990229,0.000020447465,0.00019579634,0.00038221554,0.000038067035,0.00034058225],"domain_scores_gemma":[0.9997871,0.000039182974,0.000046376917,0.00005081831,0.0000012518146,0.0000752621],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000078044024,0.0001885437,0.00020295929,0.000011776458,0.0001019154,0.00001707123,0.00014497084,0.00017600218,0.00006226445],"category_scores_gemma":[0.0000018433701,0.000076007665,0.000044694425,0.00010614995,0.00016067535,0.000037774706,0.000115616436,0.00015719287,0.0000723022],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019284023,0.00016434297,0.0013408364,0.0000023668697,0.0000062379554,0.000007658996,0.00008851226,0.000006376024,0.99184275,0.00048737833,0.000048272963,0.005985969],"study_design_scores_gemma":[0.0020648711,0.0006736163,0.106931515,0.000013658524,0.000025963858,0.00033123113,0.0016007049,0.0000018258605,0.78347415,0.0035645824,0.1004022,0.00091571006],"about_ca_topic_score_codex":0.00010610775,"about_ca_topic_score_gemma":0.0001503045,"teacher_disagreement_score":0.20836864,"about_ca_system_score_codex":0.000041558484,"about_ca_system_score_gemma":0.0000022158424,"threshold_uncertainty_score":0.30995026},"labels":[],"label_agreement":null},{"id":"W2130189571","doi":"10.1128/aem.69.9.5216-5221.2003","title":"Biotransformation of 2,4,6,8,10,12-Hexanitro-2,4,6,8,10,12-Hexaazaisowurtzitane (CL-20) by Denitrifying <i>Pseudomonas</i> sp. Strain FA1","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pesticide and Herbicide Environmental Studies","field":"Environmental Science","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"Strategic Environmental Research and Development Program","keywords":"Biotransformation; Denitrifying bacteria; Chemistry; Enzyme; Nitrite; Pseudomonas; Strain (injury); Biodegradation; Biochemistry; Denitrification; Bacteria; Stereochemistry; Chromatography; Organic chemistry; Biology; Nitrogen","score_opus":0.00668924091744443,"score_gpt":0.17633428958756917,"score_spread":0.16964504867012473,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130189571","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96472245,0.001014383,0.00051467784,0.00009878352,0.00006905016,0.00064105267,0.00073524425,0.000051509738,0.03215283],"genre_scores_gemma":[0.99599785,0.0006901695,0.0009145491,0.00039980467,0.000022165243,0.00005644936,0.00066079554,0.00004830857,0.0012099013],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99752665,0.00010430201,0.00069180946,0.0007389421,0.00019800868,0.0007402999],"domain_scores_gemma":[0.9991307,0.00010767659,0.00025157598,0.00031801642,0.000001441666,0.000190555],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00028645725,0.00053373934,0.00057855545,0.000060635986,0.0003485253,0.000022539722,0.00027035305,0.00030682725,0.0108664315],"category_scores_gemma":[0.000009400786,0.0005085514,0.00012220636,0.000102623715,0.0012941654,0.00020021501,0.00023769012,0.00026460865,0.0007275388],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007272136,0.00025287663,0.010948139,0.000023467666,0.00006744065,0.0000049856517,0.00028260847,0.00006728958,0.982775,0.00012312118,0.0026915602,0.0026908063],"study_design_scores_gemma":[0.0037825734,0.0007322289,0.015184128,0.000033303102,0.00023553519,0.00030100904,0.0023959714,0.000032995635,0.69858855,0.0010597827,0.27610657,0.0015473583],"about_ca_topic_score_codex":0.000060144273,"about_ca_topic_score_gemma":0.000067788125,"teacher_disagreement_score":0.28418642,"about_ca_system_score_codex":0.00024432174,"about_ca_system_score_gemma":0.0000068188183,"threshold_uncertainty_score":0.9997366},"labels":[],"label_agreement":null},{"id":"W2130191747","doi":"10.1128/aem.01770-06","title":"Global Effect of Indole-3-Acetic Acid Biosynthesis on Multiple Virulence Factors of <i>Erwinia chrysanthemi</i> 3937","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":126,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"University of Wisconsin-Milwaukee; National Science Foundation","keywords":"Pectate lyase; Biology; Mutant; Biochemistry; Wild type; Biosynthesis; Effector; Gene; Botany; Microbiology; Enzyme; Pectinase","score_opus":0.0038893585679713807,"score_gpt":0.16254158906855903,"score_spread":0.15865223050058766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130191747","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99807316,0.0001204397,0.0000010728592,0.000016858425,0.000047584632,0.0001468823,0.0011817891,0.000011747193,0.00040047767],"genre_scores_gemma":[0.9995332,0.000063053965,0.00001566393,0.00003343129,0.00001964292,0.000005628704,0.00031778804,0.0000011107627,0.000010511012],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99927795,0.000055700675,0.00022044775,0.00022329287,0.000033797878,0.00018881747],"domain_scores_gemma":[0.9994488,0.00033261717,0.00012748818,0.000060479346,0.0000018930783,0.00002873234],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000067820954,0.00017235582,0.000280574,0.000010747494,0.000084062296,0.000005290927,0.00014246823,0.000121909565,0.00013057879],"category_scores_gemma":[0.000007713469,0.000073058975,0.00007091355,0.0000627151,0.00028139594,0.000024781251,0.00008352941,0.00007509852,0.0000134140855],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000108108994,0.00014311972,0.06260129,0.000007405547,0.0000139488475,3.790022e-7,0.0000084727135,0.000003014572,0.93302935,0.000010912841,0.000062188825,0.0040118126],"study_design_scores_gemma":[0.00020328331,0.00037529907,0.18083544,0.000013691075,0.000013738178,0.000013490601,0.000081208134,0.0000014501752,0.8170287,0.000012905521,0.0013152676,0.00010553343],"about_ca_topic_score_codex":0.00044589283,"about_ca_topic_score_gemma":0.00006799901,"teacher_disagreement_score":0.11823415,"about_ca_system_score_codex":0.000025902753,"about_ca_system_score_gemma":0.0000013136346,"threshold_uncertainty_score":0.29792583},"labels":[],"label_agreement":null},{"id":"W2130331045","doi":"10.1128/aem.01239-13","title":"Biodegradation of Endocrine Disruptors in Solid-Liquid Two-Phase Partitioning Systems by Enrichment Cultures","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Biodegradation; Estrone; Effluent; Wastewater; Nonylphenol; Environmental chemistry; Estriol; Chemistry; Bisphenol A; Microbial biodegradation; Enrichment culture; Endocrine disruptor; Sewage treatment; Bioreactor; Chromatography; Axenic; Biofilter; Bacteria; Biology; Endocrine system; Microorganism; Environmental engineering; Biochemistry; Organic chemistry; Hormone; Environmental science","score_opus":0.007320651663979457,"score_gpt":0.2617125030739398,"score_spread":0.25439185140996035,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130331045","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979757,0.00027619294,0.000067853514,0.00011921242,0.000054771852,0.0004240862,0.00008967646,0.000012975413,0.0009795066],"genre_scores_gemma":[0.9988588,0.0002991179,0.00009314993,0.00021925819,0.000014384995,0.00003772343,0.0003361724,0.000012134567,0.00012923959],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987847,0.000045303703,0.0003528994,0.00036413962,0.00007715105,0.0003757836],"domain_scores_gemma":[0.99959713,0.000037483,0.000106695625,0.0001233102,4.417885e-7,0.000134911],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007862219,0.00020796037,0.00024750544,0.000027892464,0.00007155717,0.000015055629,0.00010999626,0.00007008054,0.001166006],"category_scores_gemma":[0.0000029311004,0.00017174761,0.000030257532,0.000061504914,0.00053693354,0.00013723808,0.00020243874,0.000117489515,0.00024064335],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026292691,0.0005070132,0.013355649,0.000009983671,0.000012817084,0.000001718066,0.0001143133,0.000222706,0.9837639,0.00005909263,0.0007219592,0.0012045803],"study_design_scores_gemma":[0.003665156,0.0005413765,0.018340247,0.000027929944,0.000035643014,0.000066983535,0.0010199851,0.0005469966,0.96670663,0.00012374825,0.008398958,0.00052633695],"about_ca_topic_score_codex":0.00042007386,"about_ca_topic_score_gemma":0.0000064787196,"teacher_disagreement_score":0.017057234,"about_ca_system_score_codex":0.00013942806,"about_ca_system_score_gemma":0.0000015012993,"threshold_uncertainty_score":0.99974704},"labels":[],"label_agreement":null},{"id":"W2130408424","doi":"10.1128/aem.02286-13","title":"A Novel Rickettsia Species Detected in Vole Ticks (Ixodes angustus) from Western Canada","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Saskatchewan","funders":"Ministry of Environment - Saskatchewan","keywords":"Biology; Rickettsia; Ixodes; Spotted fever; Dermacentor; Candidatus; Virology; Zoology; Tick; Genetics; Gene; Genome; Virus","score_opus":0.0043976232676668755,"score_gpt":0.15439356770729354,"score_spread":0.14999594443962666,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130408424","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997235,0.0011954487,0.00003306717,0.00009149937,0.00020390027,0.00035120497,0.00054496765,0.000039493625,0.00030543303],"genre_scores_gemma":[0.9976829,0.00005031691,0.000041716263,0.00061281456,0.000030731448,0.00008413365,0.000922502,0.0000236366,0.00055123726],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99871945,0.00005502213,0.000276352,0.00046766957,0.00001646987,0.00046504906],"domain_scores_gemma":[0.9995289,0.0001227844,0.00008288729,0.00021762162,0.0000036186873,0.000044202046],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00003213137,0.0002762443,0.00033660265,0.000052647403,0.000105890475,0.000014435932,0.00016072507,0.0002476737,0.0016287128],"category_scores_gemma":[0.000007063554,0.00025681886,0.000032235548,0.000057767866,0.000402269,0.000046933405,0.00017879203,0.00023917164,0.00038320365],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002166872,0.00013117066,0.17052242,0.0000035031105,0.0000844308,0.000003512337,0.00010884675,0.0000036425147,0.8271555,0.000015519052,0.0012467848,0.0007030055],"study_design_scores_gemma":[0.0016914887,0.00006194281,0.88312453,0.00000811125,0.000035993075,0.00008444199,0.0006816828,0.0000017186096,0.098924436,0.000046057732,0.014985734,0.0003538638],"about_ca_topic_score_codex":0.20688663,"about_ca_topic_score_gemma":0.17576842,"teacher_disagreement_score":0.7282311,"about_ca_system_score_codex":0.00017644558,"about_ca_system_score_gemma":0.00004650885,"threshold_uncertainty_score":0.9999884},"labels":[],"label_agreement":null},{"id":"W2130468058","doi":"10.1128/aem.71.9.5182-5191.2005","title":"Phylogenetic Characterization of Virulence and Resistance Phenotypes of <i>Pseudomonas syringae</i>","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":297,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Biology; Virulence; Multilocus sequence typing; Microbiology; Pseudomonas syringae; Antibiotic resistance; Phylogenetics; Horizontal gene transfer; Genetics; Pathogen; Gene; Antibiotics; Genotype","score_opus":0.004361806912671298,"score_gpt":0.1456845647641066,"score_spread":0.1413227578514353,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130468058","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988146,0.00050545856,0.0000016113115,0.00007420557,0.000011714589,0.00008653799,0.0003710543,0.000004790202,0.00013007164],"genre_scores_gemma":[0.9983672,0.0011641113,0.0002084967,0.0000656062,0.000026411399,0.0000051240345,0.00013725192,6.388068e-7,0.000025180547],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995488,0.000015554184,0.00014621936,0.00016793622,0.000019274416,0.00010220292],"domain_scores_gemma":[0.9998244,0.00003728867,0.00009107737,0.000026810103,0.0000016308776,0.000018793286],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000043706357,0.00008207663,0.0001551259,0.0000048155543,0.000043491986,0.0000020975463,0.00005452503,0.000051619376,0.00002778173],"category_scores_gemma":[0.0000011857279,0.00003968031,0.000013271949,0.000024278896,0.00023056554,0.000018811113,0.00007766452,0.000027273123,0.000002650433],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027085156,0.000029813253,0.0046920716,0.00000814409,0.00000882456,1.2395002e-7,0.000055893164,1.14085715e-7,0.9853245,0.00009741024,0.000002865066,0.009753134],"study_design_scores_gemma":[0.0001326281,0.00005344172,0.4158802,0.000009121873,0.000012345672,0.000010041643,0.000066528446,7.641255e-7,0.5797606,0.000044919205,0.003934653,0.00009475949],"about_ca_topic_score_codex":0.0000031184186,"about_ca_topic_score_gemma":0.000022192073,"teacher_disagreement_score":0.41118813,"about_ca_system_score_codex":0.0000050652507,"about_ca_system_score_gemma":7.061967e-7,"threshold_uncertainty_score":0.16181162},"labels":[],"label_agreement":null},{"id":"W2130479858","doi":"10.1128/aem.00068-13","title":"Mountain Pine Beetles Colonizing Historical and Naïve Host Trees Are Associated with a Bacterial Community Highly Enriched in Genes Contributing to Terpene Metabolism","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Forest Insect Ecology and Management","field":"Environmental Science","cited_by":264,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta","funders":"University of Wisconsin-Madison; U.S. Department of Agriculture","keywords":"Dendroctonus; Mountain pine beetle; Biology; Bark beetle; Pinus contorta; Host (biology); Ecology; Terpene; Insect; Herbivore; Bark (sound)","score_opus":0.004960381497740754,"score_gpt":0.16378856760733923,"score_spread":0.15882818610959848,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130479858","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988105,0.00013356475,0.000023601902,0.00022536141,0.000057412664,0.00056703395,0.00003547619,0.000021702388,0.000125322],"genre_scores_gemma":[0.9986239,0.000056633915,0.00024063977,0.00067902124,0.00001795142,0.0001424948,0.00012827796,0.000014929551,0.00009615186],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99877125,0.00015073562,0.00023049064,0.00033172287,0.00004313714,0.00047266934],"domain_scores_gemma":[0.9995289,0.00012022654,0.000112562964,0.00014139169,0.0000013590302,0.00009555778],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002808332,0.0002209508,0.00035558493,0.000051386458,0.00031227455,0.000021328044,0.00014322944,0.0001561227,0.00025966938],"category_scores_gemma":[0.000014834548,0.00018977968,0.000017326365,0.00008780308,0.0003366114,0.00007712959,0.00060694764,0.00021458659,0.00005480469],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000075587704,0.00019889044,0.09312751,0.0000034076515,0.000034955337,0.0000055574083,0.000462309,0.000031929518,0.9050831,0.000047797734,0.0001567088,0.0007722196],"study_design_scores_gemma":[0.0014345889,0.00020466886,0.9917021,0.000007020914,0.000028112514,0.000016677419,0.00064986513,0.000014002875,0.0029303953,0.00008900013,0.0026693088,0.00025427784],"about_ca_topic_score_codex":0.0019360232,"about_ca_topic_score_gemma":0.0037015711,"teacher_disagreement_score":0.9021527,"about_ca_system_score_codex":0.0004745202,"about_ca_system_score_gemma":0.0000027295416,"threshold_uncertainty_score":0.7738991},"labels":[],"label_agreement":null},{"id":"W2130553553","doi":"10.1128/aem.01357-09","title":"Multiplex PCR Method for Detection of Three <i>Aeromonas</i> Enterotoxin Genes","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"Health Canada; Vlaamse regering; Canadian Food Inspection Agency","keywords":"Amplicon; Aeromonas salmonicida; Biology; Gene; Multiplex polymerase chain reaction; GenBank; Enterotoxin; Microbiology; Aeromonas; Polymerase chain reaction; Molecular biology; Genetics; Bacteria; Escherichia coli","score_opus":0.006941214834359807,"score_gpt":0.2021457829028983,"score_spread":0.1952045680685385,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130553553","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9694386,0.0041692997,0.02347904,0.00014395968,0.00026520857,0.0015505255,0.0005286627,0.000068525434,0.00035616168],"genre_scores_gemma":[0.99622947,0.00014348593,0.0015808722,0.00049181114,0.000030124971,0.00006482389,0.0011228527,0.00001599865,0.00032056548],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988594,0.000044711054,0.0003015923,0.00044262558,0.00001109175,0.00034060134],"domain_scores_gemma":[0.99957556,0.000054298085,0.0001455556,0.00019476001,0.0000048328607,0.000024998953],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012557689,0.0002563663,0.00035317818,0.000069624824,0.00014754315,0.000006049372,0.0001552877,0.00027653124,0.000100049794],"category_scores_gemma":[0.0000029584496,0.00022470327,0.00012122167,0.000039298837,0.00023329043,0.000034067984,0.00008961513,0.00011331116,0.00005252795],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027369283,0.00018117894,0.00023234246,0.00001821518,0.0001360216,4.7958457e-7,0.00009516465,0.0000027697986,0.9431612,0.00034227694,0.00044289188,0.05511379],"study_design_scores_gemma":[0.0023354848,0.00031322273,0.0034885842,0.0000066992648,0.000120017554,0.00004006406,0.00021870043,0.000005905166,0.9302495,0.00033538614,0.062638834,0.00024755966],"about_ca_topic_score_codex":0.000014503824,"about_ca_topic_score_gemma":0.000016198086,"teacher_disagreement_score":0.062195946,"about_ca_system_score_codex":0.00002602159,"about_ca_system_score_gemma":0.000004015711,"threshold_uncertainty_score":0.91631335},"labels":[],"label_agreement":null},{"id":"W2130654216","doi":"10.1128/aem.66.5.1960-1969.2000","title":"Diversity and Distribution of DNA Sequences with Affinity to Ammonia-Oxidizing Bacteria of the β Subdivision of the Class <i>Proteobacteria</i> in the Arctic Ocean","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":109,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Temperature gradient gel electrophoresis; Biology; 16S ribosomal RNA; Bacteria; Archaea; Proteobacteria; Library; Microbiology; Genetics","score_opus":0.004914216201045482,"score_gpt":0.15757218069451473,"score_spread":0.15265796449346924,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130654216","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993636,0.00000903234,9.415234e-7,0.00014876662,0.000017772712,0.0003128356,0.000096562275,0.0000014237235,0.00004903509],"genre_scores_gemma":[0.9996767,0.00003363379,0.000033988574,0.00021375959,0.0000029332234,0.000002717297,0.00002826427,0.000002690698,0.00000532881],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999258,0.00023836872,0.00016369735,0.00016162673,0.000036182017,0.00014213889],"domain_scores_gemma":[0.9995602,0.000080839585,0.00010968989,0.0002310224,9.572748e-7,0.000017291955],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002145434,0.000103041726,0.00017356007,0.0000072453367,0.00039457623,0.0000017528967,0.00033514854,0.00008228992,0.00016816979],"category_scores_gemma":[0.0000033088609,0.00005438569,0.00002609298,0.00008708306,0.0013799241,0.000029001483,0.0010257029,0.00014548398,0.0000021524638],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010868121,0.000075706914,0.17075807,0.0000087136295,0.0000065228373,1.13506395e-7,0.0013679089,0.000032431748,0.8273801,0.000046313708,0.0000151726845,0.00020023418],"study_design_scores_gemma":[0.00026652997,0.0001316539,0.90607363,0.000012784582,0.000015661555,0.000014403623,0.0003127786,0.000001029069,0.092511795,0.00017666523,0.00041944507,0.000063628766],"about_ca_topic_score_codex":0.0007276532,"about_ca_topic_score_gemma":0.00064982683,"teacher_disagreement_score":0.73531556,"about_ca_system_score_codex":0.000041732616,"about_ca_system_score_gemma":0.0000033854226,"threshold_uncertainty_score":0.50843877},"labels":[],"label_agreement":null},{"id":"W2130658803","doi":"10.1128/aem.00780-08","title":"AbiV, a Novel Antiphage Abortive Infection Mechanism on the Chromosome of <i>Lactococcus lactis</i> subsp. <i>cremoris</i> MG1363","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Danmarks Tekniske Universitet","keywords":"Lactococcus lactis; Biology; Microbiology; Lactococcus; Bacteria; Mechanism (biology); Chromosome; Genetics; Gene; Lactic acid","score_opus":0.011248598073165866,"score_gpt":0.1606452994443155,"score_spread":0.14939670137114963,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130658803","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981568,0.000055070166,0.000016343725,0.00020414212,0.00009487907,0.00037717362,0.00025925663,0.000020852542,0.0008155235],"genre_scores_gemma":[0.99849796,0.0004858735,0.00002362143,0.0006965113,0.00007021688,0.000022856811,0.00015781813,0.0000022850068,0.000042830437],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999149,0.000029195558,0.00020330805,0.00031273614,0.000052426112,0.00025332108],"domain_scores_gemma":[0.9996527,0.000090089234,0.00012735355,0.00007568748,0.0000034790214,0.00005071352],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009221779,0.0001869896,0.00021417942,0.00001117924,0.00026087137,0.000007343792,0.00012344825,0.0001542556,0.00014582979],"category_scores_gemma":[0.0000023111215,0.0000732823,0.00006569084,0.000089984635,0.00032968042,0.000030408844,0.00010095682,0.0001713414,0.000029682094],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041991952,0.00023733175,0.0012400127,0.0000025866332,0.000027081209,0.0000018898713,0.00007098478,0.0000011576839,0.99536866,0.0020683506,0.0000980734,0.0008418646],"study_design_scores_gemma":[0.00070876227,0.0009231878,0.09038913,0.000013247368,0.000031834537,0.00013339656,0.00024245233,0.000010523841,0.8982275,0.0006917892,0.008272711,0.00035543545],"about_ca_topic_score_codex":0.000071478054,"about_ca_topic_score_gemma":0.00002160235,"teacher_disagreement_score":0.09714115,"about_ca_system_score_codex":0.00002662983,"about_ca_system_score_gemma":0.0000031270017,"threshold_uncertainty_score":0.29883656},"labels":[],"label_agreement":null},{"id":"W2130710255","doi":"10.1128/aem.70.2.1123-1128.2004","title":"Biodegradation of the Hexahydro-1,3,5-Trinitro-1,3,5-Triazine Ring Cleavage Product 4-Nitro-2,4-Diazabutanal by <i>Phanerochaete chrysosporium</i>","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":92,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"Strategic Environmental Research and Development Program","keywords":"Phanerochaete; Biodegradation; Chrysosporium; Chemistry; Triazine; Nuclear chemistry; Lignin peroxidase; Nitrite; Nitro compound; Environmental chemistry; Nitro; Organic chemistry; Lignin; Laccase; Enzyme; Nitrate","score_opus":0.002677069200179183,"score_gpt":0.15087085092514096,"score_spread":0.14819378172496178,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130710255","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997614,0.00015507815,0.00004495258,0.0003635448,0.00015658942,0.00042044476,0.00031749098,0.00002507224,0.00090281555],"genre_scores_gemma":[0.99847615,0.00018862495,0.00028305026,0.0005912521,0.00004537019,0.000008084662,0.00024035266,0.000019290314,0.00014782626],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998567,0.00004303406,0.0003832737,0.0005209915,0.00012328915,0.0003624081],"domain_scores_gemma":[0.99936736,0.00001974042,0.0002239155,0.00029800233,0.000001572745,0.000089401394],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017065082,0.0002642346,0.000260457,0.000028726708,0.00016957326,0.000012020881,0.00028277264,0.00013573647,0.00042260787],"category_scores_gemma":[0.000006827294,0.00019659432,0.00006726023,0.00015708694,0.0007281973,0.000080661375,0.00033646254,0.00018823997,0.0001579887],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003866958,0.00012348106,0.010071769,0.0000066251737,0.000017290631,7.099625e-7,0.00010992055,0.000035105702,0.98771304,0.000029176977,0.00059805944,0.0012561477],"study_design_scores_gemma":[0.001215519,0.00006257168,0.014400297,0.0000069171265,0.000028615748,0.000036512683,0.00006611468,0.000003017913,0.9757249,0.000088978704,0.008113606,0.00025296782],"about_ca_topic_score_codex":0.00008885914,"about_ca_topic_score_gemma":0.00003832703,"teacher_disagreement_score":0.011988162,"about_ca_system_score_codex":0.00015880865,"about_ca_system_score_gemma":0.000009460996,"threshold_uncertainty_score":0.8016884},"labels":[],"label_agreement":null},{"id":"W2131485875","doi":"10.1128/aem.71.9.5544-5550.2005","title":"Fungal Community Analysis by Large-Scale Sequencing of Environmental Samples","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":950,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"National Science Foundation","keywords":"Biology; Ascomycota; Basidiomycota; Species richness; Internal transcribed spacer; Dominance (genetics); Fungal Diversity; Soil microbiology; Relative species abundance; Phylum; Botany; Ecology; Pyrosequencing; Microbial population biology; Community structure; Ribosomal RNA; Abundance (ecology); Soil water; Gene; Genetics; Bacteria","score_opus":0.00647921278751743,"score_gpt":0.16625735140739772,"score_spread":0.1597781386198803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131485875","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.985408,0.0004155324,0.000017320139,0.000059382754,0.000018338644,0.000088555185,0.013375589,0.000013097779,0.00060417183],"genre_scores_gemma":[0.9899141,0.0005498427,0.00014418166,0.00027238444,0.000038284892,0.0000063424545,0.008976386,0.000001047913,0.000097408396],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992818,0.00007335151,0.00020007422,0.00019072006,0.00003522742,0.00021879072],"domain_scores_gemma":[0.99946743,0.00032867212,0.00007896229,0.00006338484,6.918226e-7,0.000060842573],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00011802047,0.00013365693,0.00022273247,0.000016246597,0.00024106339,0.000007956153,0.00012481246,0.00010471228,0.0045583216],"category_scores_gemma":[0.000001665921,0.00006654338,0.000082479215,0.000066815854,0.000054969205,0.00004138831,0.00011110164,0.000176884,0.000095338044],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001747729,0.0001451906,0.053693026,0.0000015585297,0.00007323199,2.0404815e-7,0.0001890375,0.000010222895,0.94124913,0.000028018012,0.00044187464,0.004151022],"study_design_scores_gemma":[0.00051327236,0.00051058177,0.19085853,0.000014010175,0.00065074133,0.0001811243,0.01680314,0.0002579871,0.47303364,0.0001996898,0.31596312,0.0010141456],"about_ca_topic_score_codex":0.0002522605,"about_ca_topic_score_gemma":0.00026469017,"teacher_disagreement_score":0.4682155,"about_ca_system_score_codex":0.00004151625,"about_ca_system_score_gemma":9.966717e-7,"threshold_uncertainty_score":0.99635166},"labels":[],"label_agreement":null},{"id":"W2131736935","doi":"10.1128/aem.70.11.6453-6458.2004","title":"Use of Merocyanine 540 for Photodynamic Inactivation of <i>Staphylococcus aureus</i> Planktonic and Biofilm Cells","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Photodynamic Therapy Research Studies","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Beef Cattle Research Council; National Science Council","keywords":"Biofilm; Staphylococcus aureus; Antimicrobial; Incubation; Microbiology; Irradiation; Biophysics; Photosensitizer; Chemistry; Biology; Bacteria; Photochemistry; Biochemistry; Physics","score_opus":0.010301261199315567,"score_gpt":0.22358128998535415,"score_spread":0.21328002878603858,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131736935","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99822545,0.00037150594,0.00009365474,0.000075939184,0.000018113706,0.0007108046,0.00047220342,0.000007669937,0.000024670722],"genre_scores_gemma":[0.99746454,0.0012448779,0.00080308196,0.00014104843,0.000010095613,0.000039925868,0.00025404315,0.000014312954,0.000028083065],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993277,0.000009568327,0.00020855774,0.00022793589,0.00003659365,0.00018962362],"domain_scores_gemma":[0.9996435,0.00008325395,0.00010073316,0.00012371648,0.000004826131,0.000043940894],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006126214,0.00013691309,0.00033737623,0.00007231941,0.000042958807,0.000002038847,0.000038270875,0.000096599535,0.000011855602],"category_scores_gemma":[0.0000043980617,0.00011469002,0.000037086556,0.00003766741,0.00049113436,0.000026622583,0.00007112762,0.00008340605,8.337376e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054327224,0.0001555782,0.00036792317,0.00009924141,0.00012998494,7.9610226e-7,0.00018177714,0.000018370003,0.99773914,0.00010614073,0.000030484316,0.00062726805],"study_design_scores_gemma":[0.0025883808,0.00061607134,0.004872117,0.000024080693,0.000046046505,0.000014252796,0.0002409696,0.000013863871,0.99043477,0.00013453592,0.0009193589,0.00009554337],"about_ca_topic_score_codex":0.000058476344,"about_ca_topic_score_gemma":0.00000918389,"teacher_disagreement_score":0.0073043844,"about_ca_system_score_codex":0.00006581471,"about_ca_system_score_gemma":0.0000147670435,"threshold_uncertainty_score":0.46769232},"labels":[],"label_agreement":null},{"id":"W2131900019","doi":"10.1128/aem.02830-05","title":"Temporal Prevalence of Antimicrobial Resistance in <i>Campylobacter</i> spp. from Beef Cattle in Alberta Feedlots","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; University of Calgary","keywords":"Campylobacter; Biology; Campylobacter coli; Enrofloxacin; Nalidixic acid; Campylobacter jejuni; Microbiology; Veterinary medicine; Campylobacter fetus; Campylobacteriosis; Feedlot; Ciprofloxacin; Beef cattle; Feces; Antibiotic resistance; Animal science; Antibiotics; Bacteria; Medicine","score_opus":0.005118027933704339,"score_gpt":0.16728845559465966,"score_spread":0.16217042766095532,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131900019","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979767,0.0005108871,5.848153e-7,0.00025376413,0.00004908785,0.00019132212,0.00034080236,0.0000076013907,0.00066923397],"genre_scores_gemma":[0.99846506,0.00021038776,0.00011568462,0.00025218358,0.00006600274,0.00001236197,0.0006748109,0.0000020041307,0.00020147787],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986186,0.00008919401,0.00043396003,0.00048237975,0.000029667774,0.000346191],"domain_scores_gemma":[0.99951214,0.00023549396,0.00013748877,0.00007717357,0.0000016445326,0.000036057307],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012553952,0.00019122116,0.00036257398,0.000019202016,0.000036821915,0.0000058647406,0.00019013857,0.00021278618,0.00019146608],"category_scores_gemma":[0.0000041718513,0.000102993035,0.000044624627,0.000093733535,0.00029635272,0.000039583145,0.00011570232,0.00013295436,0.000027473534],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052417156,0.00009719971,0.4089756,0.0000077384775,0.0000025686384,0.0000015467083,0.000024887187,0.0000024040546,0.5903693,0.000051912626,0.00014659444,0.00026781115],"study_design_scores_gemma":[0.0004445001,0.000036574584,0.97182655,0.000023941333,0.0000066295183,0.0000072857288,0.00005412993,7.0032195e-7,0.023732157,0.00066655397,0.003006431,0.00019455445],"about_ca_topic_score_codex":0.00822471,"about_ca_topic_score_gemma":0.015944012,"teacher_disagreement_score":0.56663716,"about_ca_system_score_codex":0.000039326227,"about_ca_system_score_gemma":0.0000034173204,"threshold_uncertainty_score":0.9983796},"labels":[],"label_agreement":null},{"id":"W2132170905","doi":"10.1128/aem.02178-10","title":"Role of the Cell Wall Microenvironment in Expression of a Heterologous SpaP-S1 Fusion Protein by <i>Streptococcus gordonii</i>","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research","keywords":"Streptococcus gordonii; Heterologous; Biology; Fusion protein; Cell biology; Cell fusion; Protein expression; Cell; Microbiology; Streptococcus; Bacteria; Genetics; Recombinant DNA; Gene","score_opus":0.0009848015211007099,"score_gpt":0.13714071118325805,"score_spread":0.13615590966215735,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132170905","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988631,0.00037277184,0.000003258975,0.00005512751,0.00004096256,0.0004518778,0.0001284049,0.0000024788255,0.00008199537],"genre_scores_gemma":[0.9991537,0.00022187842,0.00020237706,0.00009365637,0.000016982149,0.00003918358,0.00021253445,0.0000145502645,0.000045154542],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991037,0.00003243512,0.00026416712,0.00035152276,0.00003065218,0.00021747548],"domain_scores_gemma":[0.99946636,0.0000043468913,0.0001609696,0.000335633,0.0000016089213,0.000031084834],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000059722857,0.00016972324,0.00019348873,0.00002290365,0.000035622208,0.0000023911227,0.00022650418,0.00042560155,0.000041017367],"category_scores_gemma":[0.0000015422053,0.00012742287,0.00005109303,0.000024479481,0.00049285224,0.0000012774018,0.00044731412,0.0001800018,0.0000033588765],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000067479494,0.0002128368,0.004753019,0.000011366382,0.00000572935,1.5894945e-7,0.00002730789,0.0000022699332,0.9936781,0.0000048691795,0.00006087794,0.0011759875],"study_design_scores_gemma":[0.0006551041,0.00022839113,0.0043879417,0.00000565869,0.0000064358687,0.0000067994647,0.00005618528,0.0000010482926,0.97779983,0.000034589393,0.016696056,0.000121960096],"about_ca_topic_score_codex":0.000018643232,"about_ca_topic_score_gemma":0.000024998708,"teacher_disagreement_score":0.01663518,"about_ca_system_score_codex":0.0000073842534,"about_ca_system_score_gemma":0.000007277469,"threshold_uncertainty_score":0.5196154},"labels":[],"label_agreement":null},{"id":"W2132499267","doi":"10.1128/aem.01188-07","title":"Effect of Insect Larval Midgut Proteases on the Activity of <i>Bacillus thuringiensis</i> Cry Toxins","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect Resistance and Genetics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Midgut; Proteases; Bacillus thuringiensis; Cry1Ac; Manduca sexta; Protease; Biochemistry; Biology; Microbiology; Toxin; Insect; Enzyme; Bacteria; Larva; Botany; Genetically modified crops; Transgene","score_opus":0.0036410875959110127,"score_gpt":0.18708088984648308,"score_spread":0.18343980225057208,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132499267","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99856555,0.00029904407,0.00003478387,0.00001405026,0.000034195786,0.00030728013,0.00007374105,0.0000027419399,0.0006686322],"genre_scores_gemma":[0.9995106,0.00015683497,0.00003457248,0.00013755076,0.00004295246,0.000011720931,0.00005163003,0.000010974021,0.000043207634],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99934393,0.000054928532,0.0001428207,0.00022394722,0.000038264203,0.00019612667],"domain_scores_gemma":[0.99958986,0.00006525344,0.000092748654,0.00022171788,0.000002753991,0.000027649508],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024843408,0.00014692284,0.00017781452,0.000021277558,0.000056452038,0.0000019900785,0.00009929776,0.00014428113,0.000011370683],"category_scores_gemma":[0.000008586436,0.000100543984,0.00006452924,0.00002567741,0.00037471994,9.750358e-7,0.00009809538,0.00008133026,0.0000029998237],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006568136,0.00008416277,0.0016035851,0.000030139696,0.000044359207,0.0000010144563,0.000031964133,0.000006971249,0.99383944,0.00003264393,0.000061073035,0.003607854],"study_design_scores_gemma":[0.00045107084,0.0011346533,0.0069087166,0.000006350272,0.000019055888,0.000013895365,0.00003341562,4.053581e-7,0.9892535,0.000010694751,0.00206869,0.00009953288],"about_ca_topic_score_codex":0.0000074159643,"about_ca_topic_score_gemma":0.000012263227,"teacher_disagreement_score":0.0053051314,"about_ca_system_score_codex":0.000009532785,"about_ca_system_score_gemma":0.000007786883,"threshold_uncertainty_score":0.41000646},"labels":[],"label_agreement":null},{"id":"W2132773933","doi":"10.1128/aem.01525-13","title":"Multilocus Genotype Analysis of Escherichia coli O157 Isolates from Australia and the United States Provides Evidence of Geographic Divergence","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Public Health Agency of Canada; University of Washington; Meat and Livestock Australia; Washington State University; U.S. Department of Agriculture","keywords":"Biology; Multiple Loci VNTR Analysis; Genotype; Escherichia coli; Genetic variation; Carriage; Virulence; Multilocus sequence typing; Lineage (genetic); Locus (genetics); Genetics; Variable number tandem repeat; Microbiology; Gene","score_opus":0.010394565051839989,"score_gpt":0.2286595085760563,"score_spread":0.2182649435242163,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132773933","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99652994,0.0029027106,0.000043015858,0.0000679367,0.0000115778475,0.0003340644,0.00010348431,0.000002633553,0.0000046132914],"genre_scores_gemma":[0.99271977,0.0064937356,0.00035581226,0.000085097454,0.000009019329,0.000051912553,0.00024992228,0.000006720321,0.000028021874],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99917495,0.00008858863,0.00021967209,0.0002933865,0.00003719626,0.00018621287],"domain_scores_gemma":[0.99949694,0.00012048596,0.00012521294,0.0002005758,0.000014661817,0.000042128173],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012184396,0.00014637479,0.00029401295,0.0000620941,0.00007369954,0.000008147815,0.00015192312,0.00009823369,0.00005959271],"category_scores_gemma":[0.00002193132,0.000100106045,0.00005991261,0.00014403948,0.001537979,0.000004467576,0.00036359462,0.00007869944,0.0000023116215],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015379673,0.00003383835,0.12762195,0.000015219861,0.0007676609,8.841088e-8,0.00016244053,0.000066707056,0.8710058,0.000019087933,0.000022061591,0.00013139154],"study_design_scores_gemma":[0.0013428595,0.000387998,0.674005,0.000018704395,0.0006998748,0.0000012121485,0.0011593922,0.0012335731,0.319689,0.00020688048,0.00094335986,0.00031218526],"about_ca_topic_score_codex":0.0037779268,"about_ca_topic_score_gemma":0.00012270869,"teacher_disagreement_score":0.55131674,"about_ca_system_score_codex":0.0000049223563,"about_ca_system_score_gemma":0.0000053464246,"threshold_uncertainty_score":0.57111204},"labels":[],"label_agreement":null},{"id":"W2132816841","doi":"10.1128/aem.00664-09","title":"Modified <i>Bacillus thuringiensis</i> Toxins and a Hybrid <i>B. thuringiensis</i> Strain Counter Greenhouse-Selected Resistance in <i>Trichoplusia ni</i>","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect Resistance and Genetics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of the Fraser Valley; University of British Columbia","funders":"","keywords":"Trichoplusia; Bacillus thuringiensis; Cabbage looper; Strain (injury); Biology; Bacillaceae; Microbiology; Bacteria; Botany; PEST analysis; Genetics; Bacillus subtilis; Noctuidae","score_opus":0.0029854563932119357,"score_gpt":0.16921616198911926,"score_spread":0.16623070559590733,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132816841","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995031,0.0029204872,0.00010967412,0.00012875185,0.0000484553,0.00030402993,0.00021875002,0.000020464426,0.0012183825],"genre_scores_gemma":[0.9947931,0.0018869434,0.0004500743,0.002017445,0.000078277866,0.000017230932,0.00039011004,0.0000285386,0.0003382659],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983543,0.000043905893,0.00030880116,0.00070324406,0.00006154275,0.0005281641],"domain_scores_gemma":[0.99948996,0.000013750713,0.000087719636,0.0003073605,0.000008009337,0.0000931906],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00012079434,0.0003294944,0.00030456542,0.00006838001,0.00011970844,0.000024887018,0.00014870486,0.00022250599,0.0000062862387],"category_scores_gemma":[0.000006226438,0.00033134312,0.00004173582,0.00008809529,0.00026815565,0.000006286146,0.000121047015,0.00018144168,0.000005454358],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002486133,0.00010004676,0.000866249,0.000013231449,0.00002437145,0.000017273112,0.000114454415,0.000024753572,0.9964373,0.00007662809,0.00068631617,0.0013907515],"study_design_scores_gemma":[0.0070242095,0.0009725875,0.09121185,0.000055174558,0.00008811001,0.0004682149,0.0003142104,0.000026427544,0.82126033,0.0011181748,0.075599134,0.00186157],"about_ca_topic_score_codex":0.000007016986,"about_ca_topic_score_gemma":0.00018742612,"teacher_disagreement_score":0.17517698,"about_ca_system_score_codex":0.000039038416,"about_ca_system_score_gemma":0.000023443778,"threshold_uncertainty_score":0.9999139},"labels":[],"label_agreement":null},{"id":"W2132954220","doi":"10.1128/aem.00246-08","title":"Microencapsulation of Bacteriophage Felix O1 into Chitosan-Alginate Microspheres for Oral Delivery","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":306,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; China Scholarship Council","keywords":"Bacteriophage; Incubation; Chitosan; Incubation period; Microsphere; Trehalose; Chemistry; Microbiology; In vitro; Pepsin; Bacteria; Chromatography; Biology; Biochemistry; Chemical engineering; Escherichia coli","score_opus":0.0056692714005251695,"score_gpt":0.18741721375423295,"score_spread":0.18174794235370778,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132954220","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983345,0.00015318103,0.00038958728,0.000050364506,0.00012783064,0.00037499476,0.00017026933,0.000019510084,0.00037973662],"genre_scores_gemma":[0.9934674,0.00022712193,0.0054043415,0.0002510506,0.000031418767,0.000033832355,0.00034509975,0.000024456813,0.00021527872],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989246,0.000022558761,0.00030921304,0.0004149591,0.000031008305,0.0002976604],"domain_scores_gemma":[0.9995767,0.000035565496,0.00014345687,0.00017422144,0.0000013533214,0.00006873533],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000047160644,0.0002231782,0.00027432168,0.000028273847,0.00025154202,0.000009133216,0.00014406336,0.00014174606,0.00085445103],"category_scores_gemma":[0.000002003194,0.00021508902,0.00008797647,0.00004011302,0.0007168384,0.00011404119,0.00021401737,0.00010251854,0.00009230466],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000858723,0.0001163136,0.0023210144,0.000012891694,0.000025534564,0.0000019688994,0.0004721605,0.000026467667,0.99171025,0.000009097025,0.00046108343,0.0047573373],"study_design_scores_gemma":[0.0010047387,0.0001722858,0.10335932,0.000007341369,0.000033483924,0.00018771752,0.00017967419,0.000027800648,0.87759346,0.000085540414,0.017052842,0.00029578613],"about_ca_topic_score_codex":0.00024579212,"about_ca_topic_score_gemma":0.000031940985,"teacher_disagreement_score":0.11411679,"about_ca_system_score_codex":0.000063150386,"about_ca_system_score_gemma":0.000004540241,"threshold_uncertainty_score":0.935564},"labels":[],"label_agreement":null},{"id":"W2133003441","doi":"10.1128/aem.02081-08","title":"Reconfiguring the Quorum-Sensing Regulator SdiA of<i>Escherichia coli</i>To Control Biofilm Formation via Indole and<i>N</i>-Acylhomoserine Lactones","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":122,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Army Research Office; Institute of Genetics; National Institute of Biomedical Imaging and Bioengineering; National Institutes of Health; Keio University","keywords":"Biofilm; Quorum sensing; Tryptophanase; Indole test; Microbiology; Biology; Homoserine; Escherichia coli; Gene; Bacteria; Chemistry; Biochemistry; Genetics","score_opus":0.0032516891136128326,"score_gpt":0.17004746117090538,"score_spread":0.16679577205729254,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133003441","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983971,0.00028978311,0.00031333484,0.00047687892,0.0000689615,0.00028100825,0.00004432684,0.000007781665,0.00012078853],"genre_scores_gemma":[0.9970282,0.00017862271,0.00073047634,0.0017968044,0.00009162272,0.0000026639461,0.00013986522,0.000012326486,0.000019460635],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992056,0.000036039313,0.00023329217,0.00026695235,0.00002435862,0.00023376432],"domain_scores_gemma":[0.9996512,0.0000121885805,0.00010349625,0.00016750798,0.000004460828,0.00006115699],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011178134,0.00017402791,0.00021041355,0.000024018616,0.00012144513,0.000015201907,0.00006574461,0.00015068124,0.000006384274],"category_scores_gemma":[0.0000036124038,0.00013806472,0.000036366182,0.00003290741,0.00016369131,0.0000059080567,0.00006730114,0.00007133788,0.0000040670743],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016930692,0.000019166082,0.000105153515,0.000006373225,0.000021165364,4.589891e-7,0.00007300306,0.00000527508,0.9874133,0.00003546159,0.000068988666,0.012082332],"study_design_scores_gemma":[0.0007091227,0.00025696622,0.0072328257,0.000008453608,0.000020745189,0.00007604114,0.00012178258,0.000027632948,0.98033303,0.000022429285,0.011008417,0.00018253921],"about_ca_topic_score_codex":0.000013775961,"about_ca_topic_score_gemma":0.0000070198503,"teacher_disagreement_score":0.011899793,"about_ca_system_score_codex":0.000009676653,"about_ca_system_score_gemma":0.000005507572,"threshold_uncertainty_score":0.5630116},"labels":[],"label_agreement":null},{"id":"W2133087604","doi":"10.1128/aem.00418-09","title":"Aerobic Biodegradation of <i>N</i> -Nitrosodimethylamine by the Propanotroph <i>Rhodococcus ruber</i> ENV425","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Water Treatment and Disinfection","field":"Environmental Science","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"Office of Naval Research; Strategic Environmental Research and Development Program","keywords":"Methylamine; Dimethylamine; Chemistry; Nitrite; Biodegradation; Nitrate; N-Nitrosodimethylamine; Formate; Ammonia; Formaldehyde; Cometabolism; Nuclear chemistry; Bacteria; Inorganic chemistry; Organic chemistry; Environmental chemistry; Bioremediation; Biology","score_opus":0.002444663338675648,"score_gpt":0.15633256558263015,"score_spread":0.1538879022439545,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133087604","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99654794,0.00020585314,0.00012140567,0.0002515373,0.000036936777,0.0003338131,0.00003970617,0.000020122045,0.0024426847],"genre_scores_gemma":[0.9985561,0.00011115304,0.0002164025,0.00045692583,0.000015674235,0.000017613698,0.0003299017,0.000007687018,0.00028857274],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999176,0.00004012511,0.0002001969,0.00030330537,0.000053698914,0.00022663851],"domain_scores_gemma":[0.9996574,0.00002579946,0.000096548094,0.00017831588,5.464102e-7,0.000041376876],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008220004,0.0001803424,0.00016467574,0.000016110756,0.00013658022,0.000010272022,0.00011286042,0.00008770075,0.00026011746],"category_scores_gemma":[0.0000011271547,0.000118718395,0.000040212683,0.000068561014,0.00043786564,0.000065491535,0.00007644008,0.00008164404,0.0001276798],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002914142,0.00016718624,0.0056489343,0.0000014398366,0.000009286365,4.0304633e-7,0.00008598246,0.0000143844345,0.98084104,0.00004719459,0.0014221793,0.011732841],"study_design_scores_gemma":[0.0010237688,0.0004184612,0.026323669,0.0000028321213,0.00005532665,0.000047916186,0.00009859073,0.000011294463,0.95669407,0.00071186223,0.014363924,0.000248268],"about_ca_topic_score_codex":0.000080673126,"about_ca_topic_score_gemma":0.0000048463467,"teacher_disagreement_score":0.02414694,"about_ca_system_score_codex":0.000059130958,"about_ca_system_score_gemma":0.0000015723232,"threshold_uncertainty_score":0.48411956},"labels":[],"label_agreement":null},{"id":"W2133218591","doi":"10.1128/aem.02809-06","title":"Thiols in Nitric Oxide Synthase-Containing <i>Nocardia</i> sp. Strain NRRL 5646","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Biotechnology Research Institute","funders":"University of California, San Diego","keywords":"Strain (injury); Nocardia; Thiol; Microbiology; Nitric oxide; Biochemistry; Nitric oxide synthase; Chemistry; Dehydrogenase; Enzyme; Stereochemistry; Bacteria; Biology; Organic chemistry","score_opus":0.00429424366178104,"score_gpt":0.17786828675934502,"score_spread":0.17357404309756397,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133218591","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950855,0.0007212154,0.0004181909,0.00002021049,0.00003851319,0.00022689284,0.00018258338,0.000006970451,0.0032999746],"genre_scores_gemma":[0.9978382,0.00020989071,0.00036726415,0.00088057615,0.00004693594,0.000009009892,0.000557148,0.000009029323,0.00008197223],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990438,0.00002970002,0.00017595165,0.00037910332,0.000024684963,0.00034672956],"domain_scores_gemma":[0.9996996,0.0000282099,0.00004715639,0.00016172045,0.0000015754001,0.0000617313],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002609446,0.0001678701,0.000179316,0.00005932677,0.00007894907,0.000006987972,0.00013046645,0.00025705108,0.000018862567],"category_scores_gemma":[0.000005365513,0.00017812576,0.000048610476,0.000046090197,0.00018679489,0.0000025022816,0.00019888634,0.00013692745,0.000017407021],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012678697,0.000052629886,0.0591874,0.000007212856,0.0000322676,0.000010711627,0.00002861014,0.000007949799,0.93705535,0.00015453054,0.00011911689,0.0032174364],"study_design_scores_gemma":[0.0021321445,0.00020871536,0.3343095,0.000014871617,0.000036220372,0.00010765856,0.001115125,0.0000019671036,0.640241,0.00034867442,0.020911,0.0005731293],"about_ca_topic_score_codex":0.00002218601,"about_ca_topic_score_gemma":0.000019237397,"teacher_disagreement_score":0.29681435,"about_ca_system_score_codex":0.000028323613,"about_ca_system_score_gemma":0.00001233238,"threshold_uncertainty_score":0.72637576},"labels":[],"label_agreement":null},{"id":"W2133341977","doi":"10.1128/aem.07576-11","title":"The N-Terminal β-Sheet of the Hyperthermophilic Endoglucanase from Pyrococcus horikoshii Is Critical for Thermostability","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; La Cité Collégiale; National Research Council Canada; Institute for Biological Sciences","funders":"","keywords":"Pyrococcus horikoshii; Thermostability; Pyrococcus furiosus; Biochemistry; Triosephosphate isomerase; Enzyme; Chemistry; Biology; Archaea","score_opus":0.006260383950767992,"score_gpt":0.20454320988911698,"score_spread":0.19828282593834898,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133341977","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99786186,0.000822007,0.000083057676,0.00048700205,0.00014686471,0.00021339956,0.0003113517,0.0000024266337,0.00007203211],"genre_scores_gemma":[0.99877954,0.00015606078,0.00004074825,0.00051943224,0.00019690125,0.00004074518,0.00020302158,0.000009718246,0.00005386695],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99944735,0.000036506884,0.0001316499,0.00018905842,0.000021166592,0.00017429923],"domain_scores_gemma":[0.99964684,0.00003817529,0.000048275557,0.00022781063,0.0000037767538,0.000035096422],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009077862,0.00009594843,0.00008441831,0.0000042611064,0.00015500194,0.0000050444805,0.00010460188,0.000095742,0.000034110755],"category_scores_gemma":[0.00001419458,0.000058772563,0.00004810285,0.000012635636,0.00042205362,0.0000026424243,0.00009743445,0.000048574697,0.0000026090418],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006771947,0.000056691355,0.0038716842,0.0000044803737,0.00001869862,2.2759584e-8,0.00008512126,1.9773356e-7,0.9929788,0.0001564401,0.00019833518,0.0025618249],"study_design_scores_gemma":[0.00028988378,0.000054632226,0.0201201,0.0000014226445,0.000024697038,0.000017909279,0.00028261924,0.0000022593354,0.9352873,0.00013397654,0.043690003,0.00009518092],"about_ca_topic_score_codex":0.000004740614,"about_ca_topic_score_gemma":0.0000027156423,"teacher_disagreement_score":0.05769147,"about_ca_system_score_codex":0.0000085601405,"about_ca_system_score_gemma":0.000006754101,"threshold_uncertainty_score":0.23966756},"labels":[],"label_agreement":null},{"id":"W2133658179","doi":"10.1128/aem.67.1.217-224.2001","title":"Development and Optimization of a Novel Immunomagnetic Separation- Bacteriophage Assay for Detection of <i>Salmonella enterica</i> Serovar Enteritidis in Broth","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":92,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Salmonella; Salmonella enterica; Salmonella enteritidis; Bacteriophage; Serotype; Microbiology; Biology; Immunomagnetic separation; Virology; Detection limit; Phage typing; Population; Bacteria; Chromatography; Chemistry; Escherichia coli; Biochemistry; Medicine","score_opus":0.010932575291233891,"score_gpt":0.23769946656962848,"score_spread":0.22676689127839458,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133658179","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98310226,0.0002180514,0.016119028,0.000035581033,0.000016778988,0.00042299036,0.00004382303,0.0000038930402,0.00003761614],"genre_scores_gemma":[0.9810874,0.00062142883,0.017829506,0.00008510386,0.0000091971015,0.00006353945,0.0002673325,0.00000941912,0.000027076865],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99922097,0.000025229441,0.00033993527,0.00020343822,0.00002343393,0.00018699351],"domain_scores_gemma":[0.9997742,0.000019675419,0.000088606044,0.0000697208,0.000004207597,0.0000435768],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013952208,0.000104311635,0.0002963419,0.00007313447,0.000025903426,0.0000022609358,0.00002971576,0.00007899054,0.000021041635],"category_scores_gemma":[0.0000074727686,0.000099970086,0.000024681909,0.000034264493,0.00017775313,0.000023816938,0.000051058603,0.00005621663,6.024861e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006717375,0.00019913394,0.007380324,0.00006682879,0.000024460332,0.0000014645493,0.000114853974,0.000055857832,0.9861126,0.000003769207,0.0000029983469,0.0053659985],"study_design_scores_gemma":[0.018327368,0.004038934,0.23585774,0.00018703635,0.00007774587,0.001329533,0.0009706496,0.0048369826,0.72813654,0.000015815744,0.005796255,0.00042537425],"about_ca_topic_score_codex":0.000017899585,"about_ca_topic_score_gemma":0.000010005021,"teacher_disagreement_score":0.25797603,"about_ca_system_score_codex":0.000036150344,"about_ca_system_score_gemma":0.0000075994394,"threshold_uncertainty_score":0.40766618},"labels":[],"label_agreement":null},{"id":"W2133720547","doi":"10.1128/aem.03852-12","title":"Characterization of a Novel Panton-Valentine Leukocidin (PVL)-Encoding Staphylococcal Phage and Its Naturally PVL-Lacking Variant","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Leukocidin; Panton–Valentine leukocidin; Lytic cycle; Biology; Staphylococcus aureus; Prophage; Virulence; Gene; Frameshift mutation; Microbiology; Genetics; Integrase; Open reading frame; Genome; Bacteriophage; Virology; Virus; Exon; Peptide sequence; Bacteria; Methicillin-resistant Staphylococcus aureus; Escherichia coli","score_opus":0.006598828628233462,"score_gpt":0.18353574221519248,"score_spread":0.176936913586959,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133720547","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984465,0.000058660415,0.00023926981,0.0001066556,0.00009872901,0.0003932928,0.00015985139,0.000017125425,0.00047991442],"genre_scores_gemma":[0.9984873,0.00025291435,0.0004397567,0.00024510393,0.000033378725,0.000026837672,0.00026008,0.000018370432,0.00023625142],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989423,0.000022506936,0.0002928209,0.0003994127,0.000039212853,0.00030370467],"domain_scores_gemma":[0.9996153,0.000027030614,0.00016072602,0.00011409888,0.0000021242206,0.00008071729],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000080886406,0.00020759735,0.00023605359,0.000038816288,0.00014871292,0.000029643532,0.00010934211,0.00013381614,0.0017574261],"category_scores_gemma":[0.0000025440538,0.00018923635,0.000039162154,0.00005549166,0.0002513179,0.00022929651,0.00033870296,0.0001606739,0.000100413214],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014562878,0.00011378813,0.0006860392,0.000014465512,0.000022697248,0.0000014278164,0.00028112056,0.0000037889488,0.9964267,0.0000766613,0.000024940753,0.0023338038],"study_design_scores_gemma":[0.0014210744,0.00012767818,0.2206267,0.000032326912,0.00005388882,0.0002783112,0.00034054345,0.00041907135,0.77142894,0.000026385302,0.00476405,0.00048103573],"about_ca_topic_score_codex":0.00009340659,"about_ca_topic_score_gemma":0.00000884799,"teacher_disagreement_score":0.22499776,"about_ca_system_score_codex":0.00006121237,"about_ca_system_score_gemma":0.0000028075467,"threshold_uncertainty_score":0.9991551},"labels":[],"label_agreement":null},{"id":"W2133776083","doi":"10.1128/aem.02767-12","title":"Examination of the Genome-Wide Transcriptional Response of Escherichia coli O157:H7 to Cinnamaldehyde Exposure","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; Public Health Agency of Canada","keywords":"Cinnamaldehyde; Escherichia coli; Cinnamic acid; Cinnamyl alcohol; Biology; Antimicrobial; Gene; Alcohol dehydrogenase; Farnesol; Chemistry; Biochemistry; Enzyme; Microbiology","score_opus":0.014929871088141077,"score_gpt":0.21417433460937285,"score_spread":0.19924446352123176,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133776083","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985843,0.00049708586,0.0002017583,0.00005724542,0.00009987531,0.00023605277,0.00017106683,0.0000020883317,0.00015056792],"genre_scores_gemma":[0.9987109,0.00005129051,0.0004946112,0.00040647804,0.000046362125,0.0000226106,0.00015645951,0.000013075284,0.000098252225],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99930114,0.0001060383,0.00020693592,0.00018192138,0.000035154342,0.00016883238],"domain_scores_gemma":[0.99962795,0.000018771263,0.000083272615,0.00022061575,0.0000039613183,0.00004545158],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024211657,0.00011606985,0.00013417535,0.000020165618,0.000042790634,0.0000015492946,0.00013753341,0.00014017872,0.000030459745],"category_scores_gemma":[0.000008300682,0.00009555129,0.000047076275,0.000034274846,0.00023340466,0.000002694478,0.00018490847,0.000043960477,0.0000033927026],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042429782,0.000079192214,0.0108751785,0.0000097964285,0.00003482078,4.8772545e-8,0.0002941816,0.000022049995,0.98791933,0.00006438307,0.000021154563,0.00025554656],"study_design_scores_gemma":[0.00027755537,0.00013849659,0.3877008,0.0000016432663,0.000012307308,0.000006348708,0.00013938728,2.0423903e-7,0.6015172,0.000003192352,0.010132113,0.00007076521],"about_ca_topic_score_codex":0.0000017001468,"about_ca_topic_score_gemma":0.0000013253394,"teacher_disagreement_score":0.38640213,"about_ca_system_score_codex":0.000019813484,"about_ca_system_score_gemma":0.000010324374,"threshold_uncertainty_score":0.38964686},"labels":[],"label_agreement":null},{"id":"W2133800844","doi":"10.1128/aem.67.4.1529-1535.2001","title":"Cold-Adapted β-Galactosidase from the Antarctic Psychrophile <i>Pseudoalteromonas haloplanktis</i>","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":185,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fonds De La Recherche Scientifique - FNRS; Polar Knowledge Canada","keywords":"Psychrophile; Biochemistry; Biology; Lactose; Enzyme; Homotetramer; Escherichia coli; Pseudoalteromonas; Amino acid; Kluyveromyces; Kluyveromyces marxianus; Peptide sequence; Glycoside hydrolase; Protein subunit; Yeast; Saccharomyces cerevisiae; 16S ribosomal RNA","score_opus":0.0045479069750025206,"score_gpt":0.1746742942870516,"score_spread":0.1701263873120491,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133800844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978284,0.0005625114,0.0003396273,0.0005675568,0.0001368521,0.0001671854,0.00013888639,0.0000119705455,0.0002470027],"genre_scores_gemma":[0.9930299,0.0013025888,0.00008140432,0.0026477636,0.00027115244,0.000021411215,0.0024034753,0.000016440717,0.00022585317],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99928355,0.00003320332,0.00013337862,0.00035509217,0.00002573355,0.00016902875],"domain_scores_gemma":[0.9996595,0.000009890964,0.000055394685,0.00022768258,0.0000023144235,0.00004522984],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000042478856,0.00014207627,0.0001012524,0.000010227058,0.0001318633,0.000013774237,0.00009867353,0.00011601371,0.00015517461],"category_scores_gemma":[0.000002098185,0.00011143697,0.000027977398,0.000026838496,0.0001800487,0.0000031581556,0.00008761451,0.00008179224,0.00005187472],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006902325,0.000055689008,0.007296665,0.0000013743102,0.000029107101,0.0000015669084,0.00003916728,0.0000016797193,0.9901974,0.000039292383,0.0016236163,0.00064537994],"study_design_scores_gemma":[0.0008332551,0.000110697896,0.022060258,0.0000034480006,0.000026102383,0.00017020994,0.00015618332,0.0000038880535,0.59967405,0.00003726363,0.37669608,0.00022859446],"about_ca_topic_score_codex":0.000022962246,"about_ca_topic_score_gemma":0.00001326809,"teacher_disagreement_score":0.39052343,"about_ca_system_score_codex":0.000008907522,"about_ca_system_score_gemma":0.0000054466254,"threshold_uncertainty_score":0.4544268},"labels":[],"label_agreement":null},{"id":"W2133855323","doi":"10.1128/aem.71.9.5145-5153.2005","title":"Colonization of Cattle Intestines by<i>Campylobacter jejuni</i>and<i>Campylobacter lanienae</i>","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Cecum; Campylobacter jejuni; Campylobacter; Large intestine; Ascending colon; Biology; Jejunum; Rectum; Descending colon; Ileum; Microbiology; Duodenum; Bacteria; Gastroenterology; Genetics; Biochemistry; Medicine","score_opus":0.0040683533929089,"score_gpt":0.1583407301018151,"score_spread":0.1542723767089062,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133855323","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978516,0.0005590647,0.0000073522287,0.00071839365,0.000046996007,0.00015712636,0.00021932357,0.000026588204,0.00041354136],"genre_scores_gemma":[0.99700224,0.00047993907,0.00016193716,0.001340812,0.00010675596,0.000013609924,0.0007596053,0.0000024489648,0.000132665],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99898046,0.000056057084,0.0002836145,0.00036644144,0.000030514362,0.00028293068],"domain_scores_gemma":[0.99955636,0.00017026231,0.00012502212,0.00006123484,0.000004940141,0.00008216419],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011606857,0.00019203503,0.00028903008,0.000011052119,0.00008819084,0.000009920939,0.00012054194,0.00018331755,0.0003092552],"category_scores_gemma":[0.0000076501465,0.00009228834,0.00003584145,0.000059017068,0.00035416565,0.000049468385,0.00014457751,0.000099762496,0.000039035815],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002697949,0.00009373201,0.05518335,0.0000042600104,0.000013681147,2.2642472e-7,0.00006372756,0.0000011679755,0.9265278,0.00012063534,0.0010659499,0.016898492],"study_design_scores_gemma":[0.0012009729,0.00073618285,0.5063056,0.0000218584,0.00007829569,0.00029474063,0.0006396761,0.000023790653,0.14178821,0.0005289364,0.34754562,0.00083614705],"about_ca_topic_score_codex":0.000050875075,"about_ca_topic_score_gemma":0.000049043007,"teacher_disagreement_score":0.7847396,"about_ca_system_score_codex":0.000020365203,"about_ca_system_score_gemma":0.0000018774083,"threshold_uncertainty_score":0.37634093},"labels":[],"label_agreement":null},{"id":"W2133857956","doi":"10.1128/aem.01108-07","title":"Quantification of Cell Proliferation and Alpha-Toxin Gene Expression of<i>Clostridium perfringens</i>in the Development of Necrotic Enteritis in Broiler Chickens","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Nutreco (Canada); Agriculture and Agri-Food Canada","funders":"","keywords":"Clostridium perfringens; Broiler; Bacitracin; Toxin; Biology; Microbiology; Enteritis; Gene expression; Gene; Clostridiaceae; Cell growth; Clostridium; Molecular biology; Bacteria; Biochemistry; Antibiotics; Food science; Genetics","score_opus":0.012962824167899503,"score_gpt":0.23390708253817372,"score_spread":0.2209442583702742,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133857956","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99868,0.000469976,0.00009860943,0.000039404644,0.000014172152,0.00053449156,0.000026164835,0.0000022314994,0.00013497489],"genre_scores_gemma":[0.99842376,0.00034333576,0.0009886601,0.000021311022,0.0000146138245,0.000017726366,0.00016800102,0.0000092846985,0.000013328085],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99890685,0.00003727286,0.0005243832,0.00024036538,0.000089513494,0.00020158735],"domain_scores_gemma":[0.99962157,0.00006872913,0.000119900586,0.00014754268,0.000006406972,0.00003586252],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042849546,0.000121161014,0.00027303738,0.00014362198,0.000032205488,0.0000026118935,0.00006505886,0.00011569108,0.000022366123],"category_scores_gemma":[0.0000053253443,0.000096116506,0.00002530568,0.00009397078,0.00021636703,0.000016519458,0.00007012488,0.00014243995,0.0000015034499],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002742093,0.0004207619,0.018685823,0.00013599847,0.0000069111334,0.0000026898883,0.0016249003,0.0000022122463,0.9766061,0.00000999759,0.0000060907005,0.0022243166],"study_design_scores_gemma":[0.0012390284,0.0001405991,0.07744143,0.000046139023,0.000011610845,0.000031514643,0.0014015941,0.0000063808593,0.9195119,0.0000042684733,0.00009595097,0.00006955721],"about_ca_topic_score_codex":0.000019666504,"about_ca_topic_score_gemma":0.000025296595,"teacher_disagreement_score":0.058755606,"about_ca_system_score_codex":0.000043378514,"about_ca_system_score_gemma":0.000026868696,"threshold_uncertainty_score":0.39195174},"labels":[],"label_agreement":null},{"id":"W2134038571","doi":"10.1128/aem.01719-09","title":"Metabolic Differentiation in Biofilms as Indicated by Carbon Dioxide Production Rates","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Toronto Metropolitan University; University of Toronto","funders":"","keywords":"Biofilm; Bacteria; Biofouling; Carbon dioxide; Microbiology; Chemistry; Extracellular polymeric substance; Surface roughness; Biophysics; Biology; Food science; Materials science; Biochemistry; Ecology; Composite material; Membrane","score_opus":0.002633683553884004,"score_gpt":0.17730029204948053,"score_spread":0.17466660849559654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134038571","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99868435,0.00077330397,0.0000013132815,0.00016167627,0.000077451754,0.00016795867,0.000019862042,0.000007946836,0.00010612843],"genre_scores_gemma":[0.99734265,0.00075195835,0.00004481384,0.00030599957,0.000068486675,0.000005923449,0.0013975757,0.000009735477,0.0000728865],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992308,0.0000300636,0.00015558464,0.00035982815,0.00001896222,0.00020476992],"domain_scores_gemma":[0.9997924,0.000002029511,0.000052715022,0.00011528341,0.0000012834514,0.00003629196],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000052687763,0.00014730287,0.00014850278,0.000037458172,0.000041595154,0.000007589463,0.000046828427,0.00018401639,0.00000809933],"category_scores_gemma":[0.0000033465692,0.00013654823,0.000020898087,0.000037138958,0.00009249895,0.000002689992,0.000037513306,0.00007179255,0.0000053570484],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006267219,0.0000730079,0.002307198,0.0000014254852,0.000013721055,4.0128916e-7,0.00002851431,0.0000016513735,0.994227,0.000020988866,0.00004649982,0.0032168983],"study_design_scores_gemma":[0.0003997798,0.00011326789,0.03315507,0.0000023926266,0.000010665719,0.000024376995,0.000053115626,0.0000015583754,0.96279997,0.000014888482,0.0032694095,0.00015548118],"about_ca_topic_score_codex":0.000031948126,"about_ca_topic_score_gemma":0.000007335519,"teacher_disagreement_score":0.031427026,"about_ca_system_score_codex":0.000010937801,"about_ca_system_score_gemma":0.000004607432,"threshold_uncertainty_score":0.5568275},"labels":[],"label_agreement":null},{"id":"W2134143407","doi":"10.1128/aem.00110-10","title":"Quantitative Real-Time PCR Assays for Sensitive Detection of Canada Goose-Specific Fecal Pollution in Water Sources","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fecal contamination and water quality","field":"Environmental Science","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Regina","funders":"Canada Research Chairs; Ministry of Agriculture - Saskatchewan","keywords":"Goose; Branta; Feces; Biology; 16S ribosomal RNA; Bacteroides; Bacteroidaceae; Fecal coliform; Pollution; Microbiology; Zoology; Ecology; Water quality; Gene; Bacteria; Genetics","score_opus":0.005898163052458042,"score_gpt":0.1809898950564236,"score_spread":0.17509173200396555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134143407","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985409,0.000004596156,0.00023952061,0.00011655314,0.0000696202,0.00026211995,0.00008205319,0.0000067761807,0.00067786674],"genre_scores_gemma":[0.9992615,0.000009305061,0.00031024983,0.00011192546,0.000011710033,0.00001768645,0.00012296562,0.000008095162,0.00014657513],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992002,0.000050447237,0.00020041074,0.0002738686,0.000044844463,0.00023022435],"domain_scores_gemma":[0.999756,0.000060046394,0.000056250356,0.00008151932,0.0000013202168,0.000044874265],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021340448,0.00011843717,0.00016412967,0.000024742963,0.00008670866,0.0000044881167,0.00005287097,0.00010780716,0.00016266371],"category_scores_gemma":[0.000003210724,0.00009510175,0.000023611776,0.000027501828,0.00033118294,0.000040526225,0.000072364855,0.00010660565,0.000029127626],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009451237,0.000040057585,0.00103478,0.0000032822866,0.0000052499636,6.617403e-7,0.00039097873,0.000028517172,0.99659556,0.00018503505,0.0000680639,0.0015533165],"study_design_scores_gemma":[0.0005628939,0.00010351831,0.06766376,0.0000015734277,0.0000049732007,0.0000087705375,0.000509556,0.0001299843,0.9267919,0.00019393249,0.0038774381,0.00015169279],"about_ca_topic_score_codex":0.015490162,"about_ca_topic_score_gemma":0.052695297,"teacher_disagreement_score":0.06980363,"about_ca_system_score_codex":0.00013061812,"about_ca_system_score_gemma":0.000004518004,"threshold_uncertainty_score":0.9910658},"labels":[],"label_agreement":null},{"id":"W2134174762","doi":"10.1128/aem.00413-10","title":"Novel, Versatile, and Tightly Regulated Expression System for <i>E</i> <i>scherichia coli</i> Strains","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":92,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Biotechnology Research Institute; McGill University","funders":"","keywords":"lac operon; Lac repressor; Inducer; Repressor; Operon; Pseudomonas putida; Escherichia coli; Population; Biology; Gene expression; Gene; Molecular biology; Regulation of gene expression; Chemistry; Genetics","score_opus":0.0028943407595774613,"score_gpt":0.16316162290852773,"score_spread":0.16026728214895028,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134174762","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99847037,0.00013973436,0.00033941216,0.00006601353,0.00020118804,0.00033327777,0.00030806978,0.00001755839,0.00012435135],"genre_scores_gemma":[0.9949482,0.00011851781,0.003827943,0.00019066701,0.00012288905,0.000040987834,0.0006703802,0.00002238588,0.000058049136],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991493,0.000008704494,0.00015709449,0.00042963354,0.000017295866,0.00023792985],"domain_scores_gemma":[0.99965596,0.000007167397,0.00006847513,0.00019788841,0.0000035375788,0.000066940986],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006511694,0.00018010598,0.00016834387,0.000019418749,0.00011295043,0.000013553919,0.000100154255,0.00049396924,0.000008126644],"category_scores_gemma":[0.000002206596,0.00016060218,0.000029588598,0.000017880548,0.000335518,0.000001753933,0.00016662038,0.00011304208,0.0000023442403],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007436445,0.00003909465,0.00011629485,0.000018259034,0.000023201153,2.7987141e-7,0.000015285108,6.171564e-7,0.9981201,0.00024084181,0.00019009992,0.0011615556],"study_design_scores_gemma":[0.0011044053,0.00020812008,0.001589033,0.000003741489,0.000018394288,0.00008264817,0.00009716733,0.0000071234776,0.9390923,0.000015381085,0.057585593,0.00019610253],"about_ca_topic_score_codex":0.0000035645703,"about_ca_topic_score_gemma":0.000008764031,"teacher_disagreement_score":0.059027817,"about_ca_system_score_codex":0.000005940574,"about_ca_system_score_gemma":0.000009210709,"threshold_uncertainty_score":0.65491664},"labels":[],"label_agreement":null},{"id":"W2134256395","doi":"10.1128/aem.66.10.4440-4448.2000","title":"Identification and Analysis of the Polyhydroxyalkanoate-Specific β-Ketothiolase and Acetoacetyl Coenzyme A Reductase Genes in the Cyanobacterium <i>Synechocystis</i> sp. Strain PCC6803","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"biodegradable polymer synthesis and properties","field":"Materials Science","cited_by":89,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Public Health Agency of Canada","keywords":"ORFS; Biology; Synechocystis; Gene; Gene cluster; Open reading frame; Sequence analysis; Biochemistry; Escherichia coli; Reductase; Genetics; Peptide sequence; Enzyme; Mutant","score_opus":0.006929026971051944,"score_gpt":0.17168638438009307,"score_spread":0.16475735740904113,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134256395","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99002844,0.008786997,0.000006176581,0.00037158627,0.000033687884,0.00017502175,0.00055426615,0.0000058113797,0.000037998645],"genre_scores_gemma":[0.9970208,0.0025615885,0.000052652344,0.0002127329,0.000014072159,0.00002286563,0.000058713398,0.0000074590894,0.000049158978],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99899775,0.00012562139,0.0002822177,0.00034666914,0.000052208256,0.00019550601],"domain_scores_gemma":[0.9995451,0.00006011918,0.0000951933,0.00026778967,0.0000012879834,0.000030498739],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032679073,0.00015501851,0.00025284628,0.000050092945,0.00016706283,0.000049955204,0.00018832312,0.0000944498,0.00026162923],"category_scores_gemma":[0.0000014919109,0.00009121158,0.000035835343,0.000119555625,0.0007193587,0.000049055954,0.00007862229,0.00008125288,0.000007205954],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048810747,0.00004616787,0.0008688184,0.000008696349,0.000027462198,6.0090395e-7,0.0007361284,0.0000027991882,0.98898184,0.000057535482,0.00004103875,0.009180093],"study_design_scores_gemma":[0.00025646336,0.000027546957,0.025483964,0.0000066699786,0.0001272489,0.00004420173,0.00087002787,0.000030237228,0.96981514,0.00003993953,0.0031565472,0.00014199644],"about_ca_topic_score_codex":0.000091283146,"about_ca_topic_score_gemma":0.000030937386,"teacher_disagreement_score":0.024615146,"about_ca_system_score_codex":0.000013632018,"about_ca_system_score_gemma":0.0000051952397,"threshold_uncertainty_score":0.37195003},"labels":[],"label_agreement":null},{"id":"W2134384598","doi":"10.1128/aem.71.12.8107-8114.2005","title":"Distribution of Genes Encoding Putative Virulence Factors and Fragment Length Polymorphisms in the <i>vrrA</i> Gene among Brazilian Isolates of <i>Bacillus cereus</i> and <i>Bacillus thuringiensis</i>","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Research and Productivity Council; Université de Moncton","funders":"","keywords":"Bacillus thuringiensis; Bacillus cereus; Biology; Cereus; Virulence; Genetics; Gene; Amplicon; Bacillaceae; Microbiology; Polymerase chain reaction; Bacteria; Bacillus subtilis","score_opus":0.005394404849857688,"score_gpt":0.1922100097298965,"score_spread":0.18681560488003882,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134384598","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99583113,0.003221638,0.00009351791,0.000044961253,0.00002329534,0.00024988418,0.00046799963,0.000002296275,0.00006529908],"genre_scores_gemma":[0.9942767,0.005105736,0.00008420961,0.00007130859,0.00003303467,0.000012784654,0.00039714665,0.000010328068,0.000008738771],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989916,0.00006048316,0.00027036836,0.00036451826,0.00005052069,0.0002624745],"domain_scores_gemma":[0.99962777,0.000044204317,0.00011027777,0.00015707266,0.000005869124,0.000054823646],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018872712,0.00019679764,0.00024871988,0.000029324532,0.00008839585,0.000010496499,0.000118704316,0.0001636875,0.000007425745],"category_scores_gemma":[0.0000065974004,0.00014559284,0.000036171354,0.000044228298,0.00080543826,0.00000919368,0.00020679105,0.000102578764,6.2370395e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007796097,0.000062620304,0.02865864,0.000015217654,0.000028326522,5.721403e-7,0.00048375365,0.000013519436,0.9652097,0.000030619485,0.0000097845195,0.0054092733],"study_design_scores_gemma":[0.00070897106,0.00024343467,0.065124094,0.0000085508345,0.000016561426,0.000025905952,0.0005807963,0.000015036101,0.9309272,0.000023323859,0.0021516231,0.00017451208],"about_ca_topic_score_codex":0.00007151007,"about_ca_topic_score_gemma":0.000035710014,"teacher_disagreement_score":0.03646545,"about_ca_system_score_codex":0.000017585775,"about_ca_system_score_gemma":0.000009023327,"threshold_uncertainty_score":0.59371036},"labels":[],"label_agreement":null},{"id":"W2134505171","doi":"10.1128/aem.70.7.4326-4339.2004","title":"Microscale and Molecular Assessment of Impacts of Nickel, Nutrients, and Oxygen Level on Structure and Function of River Biofilm Communities","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Water Treatment and Disinfection","field":"Environmental Science","cited_by":150,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; University of Victoria; Biotechnology Research Institute","funders":"","keywords":"Microscale chemistry; Nutrient; Biofilm; Nickel; Environmental science; Function (biology); Environmental chemistry; Ecology; Biology; Chemistry; Materials science; Bacteria; Metallurgy; Mathematics","score_opus":0.005631252862497656,"score_gpt":0.18911515873034507,"score_spread":0.1834839058678474,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134505171","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99927056,0.00018187989,0.000054758773,0.000016282364,0.00001524895,0.00016945599,0.00019196609,0.0000028304528,0.00009704557],"genre_scores_gemma":[0.9989427,0.00031014415,0.0005592192,0.00004717868,0.0000023241587,0.000002731174,0.00012303975,0.0000063540515,0.0000063361153],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99953383,0.000020436828,0.0001436309,0.0001586566,0.000035689987,0.000107736174],"domain_scores_gemma":[0.99976176,0.000015133274,0.000091268186,0.00009364537,8.0613023e-7,0.000037409707],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000036438967,0.00012737293,0.00018120617,0.000032965447,0.000054805358,0.0000036656415,0.000031044736,0.00008697459,0.0000406278],"category_scores_gemma":[3.5627383e-7,0.000105303996,0.000015383257,0.00002486079,0.0008764255,0.00004190561,0.00013523146,0.000053683456,7.472013e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004544618,0.00010676725,0.16147722,0.000020814687,0.000026923266,2.4797552e-7,0.00034776246,0.000026777047,0.8370384,0.00013375746,0.0000043654745,0.0007715025],"study_design_scores_gemma":[0.0012553172,0.00041447277,0.5808362,0.000011137377,0.000039376035,0.000013538102,0.00035752758,0.0000021862556,0.4163386,0.00059745926,0.000051917,0.00008229568],"about_ca_topic_score_codex":0.00034863706,"about_ca_topic_score_gemma":0.000022941127,"teacher_disagreement_score":0.42069983,"about_ca_system_score_codex":0.00003591026,"about_ca_system_score_gemma":0.0000020972534,"threshold_uncertainty_score":0.42941725},"labels":[],"label_agreement":null},{"id":"W2134702025","doi":"10.1128/aem.00708-14","title":"Differing Populations of Endemic Bacteriophages in Cattle Shedding High and Low Numbers of Escherichia coli O157:H7 Bacteria in Feces","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval; Public Health Agency of Canada; Agriculture Food and Rural Development; Agriculture and Agri-Food Canada; University of Lethbridge","funders":"Public Health Agency of Canada","keywords":"Feces; Biology; Escherichia coli; Siphoviridae; Microbiology; Immunomagnetic separation; Bacteria; Myoviridae; Lytic cycle; Bacteriophage; Veterinary medicine; Virology; Virus; Genetics","score_opus":0.005179802792718889,"score_gpt":0.21084803678509634,"score_spread":0.20566823399237744,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134702025","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99940234,0.00027437773,0.00001800697,0.000018198793,0.00002697033,0.00013867537,0.000036145968,0.0000019832469,0.000083268445],"genre_scores_gemma":[0.9986892,0.0005139245,0.0005896151,0.000027493224,0.000015758686,0.000021866535,0.000115331364,0.000010818263,0.000015989532],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992804,0.000051428826,0.00021374639,0.00024491153,0.000022109185,0.00018742794],"domain_scores_gemma":[0.9997623,0.00002716404,0.00007101381,0.00010800115,0.0000019198621,0.000029608129],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000110663415,0.00012232065,0.00024166696,0.00004545571,0.000028051705,0.0000034077855,0.000069419555,0.00011271362,0.000011630575],"category_scores_gemma":[0.000012374156,0.000119668795,0.000017792745,0.000039267958,0.00030076684,0.0000036168724,0.00021827627,0.00007828894,5.315388e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037748687,0.00004503344,0.13157216,0.0000391932,0.000014389466,1.9344934e-7,0.000102799255,0.000018874494,0.8676377,0.000051578223,0.0000031900988,0.0004771482],"study_design_scores_gemma":[0.000629449,0.00008995506,0.7019462,0.000015630396,0.0000051305237,0.000002754732,0.00019802511,0.000016967031,0.2968447,0.000037755326,0.000106010804,0.00010740661],"about_ca_topic_score_codex":0.00013643915,"about_ca_topic_score_gemma":0.00016907202,"teacher_disagreement_score":0.570793,"about_ca_system_score_codex":0.000016042371,"about_ca_system_score_gemma":0.0000056143117,"threshold_uncertainty_score":0.4879952},"labels":[],"label_agreement":null},{"id":"W2134989761","doi":"10.1128/aem.02875-10","title":"Repression of the Antifungal Activity of Pseudomonas sp. Strain DF41 by the Stringent Response","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"rpoS; Biology; Mutant; Regulon; Microbiology; Stringent response; Protease; Biochemistry; Enzyme; Gene expression; Promoter; Gene","score_opus":0.014031302556609589,"score_gpt":0.18182502327675443,"score_spread":0.16779372072014484,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134989761","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987428,0.00008187883,0.0000013123257,0.00008494237,0.00004554783,0.00013252496,0.0006793436,0.000003607856,0.00022802016],"genre_scores_gemma":[0.99973565,0.00007278662,0.00001178849,0.000048363414,0.000007546204,0.0000039298384,0.000038811413,6.433316e-7,0.0000804486],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994528,0.00012723583,0.000135738,0.00014238889,0.000026325613,0.00011548459],"domain_scores_gemma":[0.9996434,0.00012236157,0.00012739813,0.00008736262,0.000001870781,0.000017631182],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001732951,0.000085004314,0.00011528184,0.0000039308725,0.0001381778,0.000003068164,0.00018649017,0.00007136302,0.00024987268],"category_scores_gemma":[0.0000043820933,0.000026337242,0.000047839265,0.00003547602,0.0003395503,0.000021812348,0.00018136555,0.00012205161,0.0000030537215],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002684355,0.00014191821,0.0029052175,0.0000014122139,0.000013160534,1.4273347e-7,0.00012357865,2.71758e-7,0.9896292,0.000013390016,0.00018971787,0.0067135263],"study_design_scores_gemma":[0.00007961897,0.00008283802,0.29790768,0.0000048983698,0.0000071535783,0.000021389278,0.0004087522,7.559771e-7,0.6994345,0.000021660453,0.0019865748,0.000044141496],"about_ca_topic_score_codex":0.00019695701,"about_ca_topic_score_gemma":0.000025058082,"teacher_disagreement_score":0.29500246,"about_ca_system_score_codex":0.000010284928,"about_ca_system_score_gemma":0.000002088383,"threshold_uncertainty_score":0.27359307},"labels":[],"label_agreement":null},{"id":"W2135075544","doi":"10.1128/aem.00240-13","title":"Biochemical Diversity of Carboxyl Esterases and Lipases from Lake Arreo (Spain): a Metagenomic Approach","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme Catalysis and Immobilization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Metagenomics; Biology; Halophile; Biochemistry; Plasmid; Enzyme; Extreme environment; Bacteria; DNA; Gene; Genetics","score_opus":0.004244791543470572,"score_gpt":0.15679001794553818,"score_spread":0.1525452264020676,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135075544","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99772817,0.0015925245,0.00017233068,0.000009638103,0.00001598757,0.00016099615,0.00020046794,0.000003565626,0.000116336385],"genre_scores_gemma":[0.9960413,0.00045942704,0.0004885871,0.0001387621,0.00003454622,0.000016585203,0.0027678797,0.0000087452045,0.00004417315],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993736,0.000021359949,0.00013210128,0.00033092566,0.000019278223,0.00012269539],"domain_scores_gemma":[0.9997276,0.000012586383,0.000060129143,0.00014985613,0.0000026660166,0.00004714991],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000033280707,0.0001281561,0.0001746279,0.000019189529,0.000060541697,0.0000068929444,0.000074182295,0.0001307386,0.00005168886],"category_scores_gemma":[0.0000032120577,0.00011454609,0.000035304718,0.000016501077,0.00029352028,0.000003586192,0.00038549042,0.000040298186,0.000004468001],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017463228,0.000067214874,0.011003787,0.000008139987,0.00006596052,1.1790717e-7,0.000064438915,0.0000032695445,0.9880413,0.000009882364,0.00019818668,0.0005202628],"study_design_scores_gemma":[0.00061013404,0.00009597323,0.020591654,0.0000027937733,0.00007070086,0.00001155472,0.0004311054,0.000018530056,0.97548544,0.000031394637,0.0024473807,0.00020331515],"about_ca_topic_score_codex":0.00006258148,"about_ca_topic_score_gemma":0.0000071062286,"teacher_disagreement_score":0.0125558125,"about_ca_system_score_codex":0.0000051395505,"about_ca_system_score_gemma":0.0000032832686,"threshold_uncertainty_score":0.46710542},"labels":[],"label_agreement":null},{"id":"W2135155962","doi":"10.1128/aem.69.1.97-101.2003","title":"Improved Understanding of the Bacterial Vaginal Microbiota of Women before and after Probiotic Instillation","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":205,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"","keywords":"Temperature gradient gel electrophoresis; Biology; Lactobacillus; Microbiology; Probiotic; 16S ribosomal RNA; Bacteria; Polymerase chain reaction; Gene; Genetics","score_opus":0.006768133585189208,"score_gpt":0.19170507537980366,"score_spread":0.18493694179461445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135155962","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99887264,0.00020741991,0.000042982934,0.00002953966,0.00017753989,0.0004157591,0.00007457581,0.0000056851204,0.00017388524],"genre_scores_gemma":[0.999698,0.00004484357,0.0000560965,0.000015258587,0.000008289344,0.000022814776,0.000039837327,0.0000111778745,0.000103684506],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99904525,0.00011893667,0.00023918824,0.00029600473,0.000011522852,0.00028908887],"domain_scores_gemma":[0.99960726,0.00004361053,0.00012115863,0.00020485026,0.0000050301765,0.000018072524],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022149706,0.00014392553,0.00024044822,0.00006942074,0.0001098128,0.0000046963587,0.00007219819,0.00018386815,0.00028804436],"category_scores_gemma":[0.000014528662,0.000105573854,0.00003360682,0.00006594335,0.0013228323,0.000035833047,0.0001180281,0.00017636784,0.000005832423],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013752199,0.00009019837,0.019047996,0.00003357616,0.00009452481,1.2218497e-7,0.0007183429,0.0000016518687,0.9785596,0.00090133096,0.000005379202,0.0004097264],"study_design_scores_gemma":[0.0019766628,0.00040532343,0.0969389,0.000018652856,0.00004476104,0.00028809143,0.0014977399,8.7244945e-7,0.8947777,0.0006380085,0.003217751,0.00019549907],"about_ca_topic_score_codex":0.000014845456,"about_ca_topic_score_gemma":0.00000812732,"teacher_disagreement_score":0.08378189,"about_ca_system_score_codex":0.00015897433,"about_ca_system_score_gemma":0.000024891076,"threshold_uncertainty_score":0.48740306},"labels":[],"label_agreement":null},{"id":"W2135367983","doi":"10.1128/aem.72.5.3498-3503.2006","title":"Role of Efflux Pumps in Adaptation and Resistance of <i>Listeria monocytogenes</i> to Benzalkonium Chloride","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":184,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Dairy Farmers of Ontario; Poultry Industry Council","keywords":"Efflux; Ethidium bromide; Benzalkonium chloride; Listeria monocytogenes; Microbiology; Biology; Bacteria; Chemistry; Biochemistry; Chromatography; Genetics","score_opus":0.01145952201957129,"score_gpt":0.2104064816028123,"score_spread":0.19894695958324102,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135367983","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99801755,0.0008751218,0.000076343014,0.0000208326,0.000031515512,0.00020781146,0.0001475048,0.0000022434708,0.0006210628],"genre_scores_gemma":[0.9980378,0.00017610294,0.0012678843,0.00009126325,0.00003612559,0.000023108038,0.0002990301,0.000013823882,0.0000548554],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992149,0.00002160522,0.00027764234,0.00030873058,0.000023862762,0.0001532788],"domain_scores_gemma":[0.9996886,0.000009813947,0.00009327862,0.00017628455,0.0000031261975,0.000028868088],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007515424,0.0001313191,0.00019793204,0.000036768928,0.00002143281,0.0000027833773,0.00008324012,0.00013153836,0.000004239954],"category_scores_gemma":[0.000001952997,0.00013798157,0.000022130007,0.00003317133,0.00017356964,0.0000026147736,0.00020332547,0.00003073018,0.0000011142365],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037059287,0.00004364941,0.006934154,0.000020992347,0.000011735714,2.4473013e-7,0.000070737966,0.00010597269,0.9918207,0.00022634487,0.000013541534,0.00038131647],"study_design_scores_gemma":[0.0005957022,0.00011441732,0.027396059,0.0000066910975,0.000009336359,0.00000916792,0.00021408111,0.0000031944599,0.96539676,0.00020298787,0.005921642,0.00012997686],"about_ca_topic_score_codex":0.00008610864,"about_ca_topic_score_gemma":0.00019894574,"teacher_disagreement_score":0.026423972,"about_ca_system_score_codex":0.000016639375,"about_ca_system_score_gemma":0.000007769589,"threshold_uncertainty_score":0.5626725},"labels":[],"label_agreement":null},{"id":"W2135561501","doi":"10.1128/aem.01365-14","title":"A New Microviridae Phage Isolated from a Failed Biotechnological Process Driven by Escherichia coli","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Escherichia coli; Bacteriophage; Microbiology; Biology; Enterobacteriaceae; Computational biology; Genetics; Gene","score_opus":0.002603049608124665,"score_gpt":0.17433937697616433,"score_spread":0.17173632736803968,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135561501","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99551445,0.00007099191,0.0026148586,0.00029712723,0.00008067795,0.00028134763,0.00018932871,0.00008783403,0.0008633547],"genre_scores_gemma":[0.99602103,0.00007281665,0.001817029,0.0010447693,0.000041766587,0.00002348549,0.000472654,0.000026855801,0.0004795983],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986203,0.000036173937,0.00025279314,0.0006578458,0.000037602418,0.00039529966],"domain_scores_gemma":[0.9994749,0.00003678731,0.00011051984,0.00022831475,6.664434e-7,0.00014880295],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000043647382,0.00029152748,0.00029052704,0.000023175271,0.00017287326,0.00003552796,0.000261043,0.00033724727,0.0049271565],"category_scores_gemma":[0.0000032420392,0.00025916702,0.000053384556,0.000082527455,0.00042170056,0.00008708707,0.00031804258,0.0003033581,0.0011146062],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041933567,0.00010655636,0.0011192523,0.000001772091,0.000026300591,0.0000014626195,0.00013058895,0.0000074409536,0.9876093,0.000007591325,0.0037417947,0.0072059752],"study_design_scores_gemma":[0.0026093966,0.00039625936,0.033870995,0.000014770645,0.00009251583,0.00005429242,0.00041558474,0.00030829172,0.715767,0.00036859806,0.2450825,0.0010197597],"about_ca_topic_score_codex":0.0003638956,"about_ca_topic_score_gemma":0.000041772044,"teacher_disagreement_score":0.2718423,"about_ca_system_score_codex":0.00008914695,"about_ca_system_score_gemma":0.0000039246916,"threshold_uncertainty_score":0.99998605},"labels":[],"label_agreement":null},{"id":"W2135596527","doi":"10.1128/aem.02850-14","title":"Burkholderia cepacia Complex Phage-Antibiotic Synergy (PAS): Antibiotics Stimulate Lytic Phage Activity","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":224,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Lytic cycle; Microbiology; Antibiotics; Burkholderia; Bacteriophage; Phage therapy; Biology; Bacteria; Virology; Virus; Escherichia coli; Biochemistry; Genetics; Gene","score_opus":0.009240123946579956,"score_gpt":0.1992677213178681,"score_spread":0.19002759737128816,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135596527","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99260646,0.000021305106,0.00073357293,0.00013385002,0.00021016298,0.00028674904,0.00012257755,0.000064456915,0.0058208434],"genre_scores_gemma":[0.9973128,0.00008454486,0.0007432111,0.0008841018,0.00007412538,0.0000018783696,0.00021957817,0.000043415363,0.0006363374],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99826366,0.00008264905,0.00028825575,0.00071655976,0.000060316568,0.00058855605],"domain_scores_gemma":[0.99924135,0.0000710298,0.00015089588,0.0003672027,0.0000012052024,0.00016834156],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00013186364,0.0003869031,0.0004088037,0.000044874854,0.00032199526,0.000049261642,0.00023356371,0.00021573121,0.0030114308],"category_scores_gemma":[0.000004515927,0.00036786226,0.00009251224,0.00008279926,0.0007868073,0.00013141517,0.0004739716,0.00025450383,0.0012123301],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034659584,0.0002260549,0.00096651964,0.000011448176,0.000038020415,0.0000051154047,0.000082936676,0.00012789464,0.9907736,0.00007936651,0.0005822647,0.007072078],"study_design_scores_gemma":[0.0023351198,0.00040982175,0.2571127,0.000022476483,0.00016594358,0.00041239086,0.00016052993,0.0015125766,0.648538,0.000133062,0.087977365,0.001220005],"about_ca_topic_score_codex":0.00016103794,"about_ca_topic_score_gemma":0.00004917468,"teacher_disagreement_score":0.34223565,"about_ca_system_score_codex":0.00014853672,"about_ca_system_score_gemma":0.0000034317773,"threshold_uncertainty_score":0.99987733},"labels":[],"label_agreement":null},{"id":"W2135642891","doi":"10.1128/aem.70.10.5750-5755.2004","title":"Mechanisms of Bactericidal Action of Cinnamaldehyde against <i>Listeria monocytogenes</i> and of Eugenol against <i>L. monocytogenes</i> and <i>Lactobacillus sakei</i>","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Essential Oils and Antimicrobial Activity","field":"Agricultural and Biological Sciences","cited_by":431,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Eugenol; Cinnamaldehyde; Lactobacillus sakei; Listeria monocytogenes; Chemistry; Extracellular; Microbiology; Biochemistry; Bacteria; Lactobacillus; Biology; Organic chemistry; Fermentation","score_opus":0.011834100030051633,"score_gpt":0.18127410756886836,"score_spread":0.16944000753881672,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135642891","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99859434,0.0002454477,0.000058069774,0.00009365438,0.000056503326,0.00023428045,0.00058007485,0.0000101777605,0.00012742188],"genre_scores_gemma":[0.9973804,0.0018140281,0.00029974958,0.00026452745,0.000024553005,0.0000056878534,0.0002008133,0.0000036806857,0.0000065847867],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989389,0.000034871908,0.00036563884,0.00037913697,0.000048951522,0.00023247275],"domain_scores_gemma":[0.9995222,0.0000402518,0.00028606772,0.0000696518,0.0000072574294,0.000074587624],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000092699716,0.00023260026,0.00047470356,0.000019644262,0.00009569867,0.000009614114,0.00010046102,0.00019473149,0.000016362597],"category_scores_gemma":[0.0000015684869,0.0001286781,0.00006528545,0.00007448741,0.00045639378,0.00006965153,0.00021295769,0.00008455173,0.0000010826183],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012055843,0.00015977117,0.0006615236,0.00005301685,0.000034821704,0.000001215423,0.000059275575,0.000011596573,0.97968656,0.00016509739,0.0000033757149,0.019043181],"study_design_scores_gemma":[0.00064296555,0.00027417968,0.010122787,0.000022602897,0.000032290965,0.000026977761,0.00033271033,0.0000023977377,0.98767513,0.00024877145,0.0004183033,0.00020090792],"about_ca_topic_score_codex":0.00022072197,"about_ca_topic_score_gemma":0.000112799884,"teacher_disagreement_score":0.018842272,"about_ca_system_score_codex":0.000024058261,"about_ca_system_score_gemma":0.0000054470443,"threshold_uncertainty_score":0.5247341},"labels":[],"label_agreement":null},{"id":"W2135678592","doi":"10.1128/aem.03964-13","title":"Enzyme Treatment Reverse Transcription-PCR To Differentiate Infectious and Inactivated F-Specific RNA Phages","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Reverse transcriptase; Biology; RNA; Enzyme; Transcription (linguistics); Virology; Reverse transcription polymerase chain reaction; Microbiology; Molecular biology; Genetics; Messenger RNA; Gene; Biochemistry","score_opus":0.005083273045727087,"score_gpt":0.1776800575132028,"score_spread":0.1725967844674757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135678592","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975319,0.000056582652,0.00040107383,0.00015877762,0.00012109318,0.00031541387,0.00006302398,0.000036864974,0.001315286],"genre_scores_gemma":[0.9979342,0.0005038834,0.00022471834,0.00056217704,0.00004066844,0.000044571287,0.00010778677,0.000020622054,0.00056134124],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99897635,0.000042667216,0.00018211968,0.00048125564,0.000026140082,0.00029149713],"domain_scores_gemma":[0.9996169,0.000029346227,0.000051019695,0.00016515721,6.2913387e-7,0.00013692598],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00004460332,0.00024628927,0.00023156015,0.000041404557,0.00020752537,0.000029528786,0.00006839377,0.00010694655,0.0013927938],"category_scores_gemma":[9.4628143e-7,0.0002137017,0.000042172982,0.000048894875,0.0002466275,0.000077876866,0.00011339822,0.00010061818,0.00041349826],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037798334,0.00013693521,0.00061253505,0.0000024745266,0.000023420183,0.0000011955505,0.00031939897,0.000011775845,0.9736724,0.000040271385,0.00043709748,0.024704687],"study_design_scores_gemma":[0.0019342916,0.00064904767,0.09241114,0.000010458327,0.000062654646,0.00017779754,0.0002869567,0.000015744827,0.5509664,0.00011439522,0.35280594,0.0005651572],"about_ca_topic_score_codex":0.00019262232,"about_ca_topic_score_gemma":0.00005760474,"teacher_disagreement_score":0.422706,"about_ca_system_score_codex":0.00017333827,"about_ca_system_score_gemma":0.00000108509,"threshold_uncertainty_score":0.99952006},"labels":[],"label_agreement":null},{"id":"W2135685845","doi":"10.1128/aem.68.11.5336-5341.2002","title":"Biodegradation of Hexahydro-1,3,5-Trinitro-1,3,5-Triazine and Its Mononitroso Derivative Hexahydro-1-Nitroso-3,5-Dinitro-1,3,5-Triazine by <i>Klebsiella pneumoniae</i> Strain SCZ-1 Isolated from an Anaerobic Sludge","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Environmental remediation with nanomaterials","field":"Engineering","cited_by":102,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"","keywords":"Chemistry; Formaldehyde; Biodegradation; Nitroso; Methanol; Diazomethane; Triazine; Klebsiella pneumoniae; Nuclear chemistry; Bacteria; Nitrite; Strain (injury); Environmental chemistry; Medicinal chemistry; Organic chemistry; Biology; Escherichia coli; Biochemistry; Nitrate","score_opus":0.006532132033855224,"score_gpt":0.17307091036418606,"score_spread":0.16653877833033084,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135685845","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99056345,0.0030712516,0.00025209747,0.000092891605,0.00019679384,0.00079241395,0.0046975,0.00017192599,0.00016169589],"genre_scores_gemma":[0.9906789,0.0039283885,0.0007284675,0.0001815275,0.00010286153,0.000072709736,0.004113761,0.00012225629,0.000071135786],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971986,0.00014239278,0.00096500665,0.00086609693,0.00015952458,0.0006684112],"domain_scores_gemma":[0.9987892,0.00018134297,0.00031130863,0.0004078396,0.000007224879,0.0003031073],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00018059138,0.00072160945,0.0008874417,0.0001865066,0.00016182986,0.00004909983,0.00027994008,0.0004954836,0.00047898912],"category_scores_gemma":[0.000011646503,0.0007540391,0.00007823106,0.00018909047,0.00044483578,0.00032789772,0.0001834139,0.00031598285,0.0001101314],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000078520374,0.00022404801,0.0014468624,0.000035971265,0.00016486766,0.0000046240875,0.00033230614,0.0001630124,0.995938,0.000026883432,0.0002097434,0.0013751449],"study_design_scores_gemma":[0.004194213,0.00050396915,0.0040829442,0.000030559368,0.00014830836,0.00005588568,0.00031165086,0.004365682,0.98288226,0.00015756204,0.0022236085,0.0010433637],"about_ca_topic_score_codex":0.000023634004,"about_ca_topic_score_gemma":0.0000060228763,"teacher_disagreement_score":0.013055763,"about_ca_system_score_codex":0.00015981913,"about_ca_system_score_gemma":0.000005706752,"threshold_uncertainty_score":0.99949104},"labels":[],"label_agreement":null},{"id":"W2135780060","doi":"10.1128/aem.01177-06","title":"Use of 16S rRNA and <i>rpoB</i> Genes as Molecular Markers for Microbial Ecology Studies","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":604,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; Canadian Institute for Advanced Research","funders":"","keywords":"rpoB; Biology; Phylogenetic tree; 16S ribosomal RNA; Ribosomal RNA; Subspecies; Genetics; Gene; Phylogenetics; Evolutionary biology; Ecology","score_opus":0.006330270348480791,"score_gpt":0.18746510929749968,"score_spread":0.18113483894901888,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135780060","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9925176,0.0066784765,0.000037858958,0.00007179471,0.000077289806,0.00033045688,0.00021940656,0.0000019276497,0.000065183216],"genre_scores_gemma":[0.9938935,0.0033948624,0.001876445,0.00039705212,0.000060124294,0.00004696096,0.00018742465,0.00001977703,0.00012385476],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991335,0.000022634606,0.00021332281,0.00038278298,0.00001540683,0.00023230173],"domain_scores_gemma":[0.9997026,0.0000383426,0.00008853701,0.00013359178,0.000007224318,0.000029714385],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006211272,0.00019134513,0.00026469582,0.00002663713,0.00008557709,0.0000059073773,0.00006184607,0.00015121479,0.0000031495515],"category_scores_gemma":[0.0000049149635,0.0001814089,0.00005518281,0.000013920615,0.00056800456,7.937362e-7,0.0002217465,0.000033682492,0.0000012700774],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013471599,0.000045483113,0.004188669,0.000023625338,0.00018530764,9.438114e-7,0.00002302449,0.000028398179,0.99339396,0.00025956327,0.0006362761,0.0010800641],"study_design_scores_gemma":[0.0011596883,0.0005345965,0.009681561,0.0000037494508,0.000096235075,0.00008419158,0.0002730444,0.0000024716512,0.9268293,0.00062944955,0.06039483,0.000310931],"about_ca_topic_score_codex":0.000022295413,"about_ca_topic_score_gemma":0.00002292503,"teacher_disagreement_score":0.06656468,"about_ca_system_score_codex":0.000009288502,"about_ca_system_score_gemma":0.000008435767,"threshold_uncertainty_score":0.7397641},"labels":[],"label_agreement":null},{"id":"W2135927911","doi":"10.1128/aem.00355-13","title":"Characterization of <i>bla</i> <sub>SHV</sub> Genes on Plasmids from Escherichia coli and Salmonella enterica Isolates from Canadian Food Animals (2006-2007)","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; University of Guelph","funders":"Public Health Agency","keywords":"Salmonella enterica; Plasmid; Escherichia coli; Biology; Salmonella; Microbiology; Enterobacteriaceae; Gene; Genetics; Virology; Bacteria","score_opus":0.005271928823898336,"score_gpt":0.14432169943532938,"score_spread":0.13904977061143103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135927911","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99694294,0.00039594283,0.0000020076488,0.00025639415,0.00009945871,0.00029312278,0.0018936578,0.000017801629,0.000098657845],"genre_scores_gemma":[0.99531555,0.00093160564,0.000043847063,0.0013657756,0.00013156662,0.00003376369,0.002166806,0.000004020697,0.000007085548],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998732,0.0000801563,0.00030103297,0.000495576,0.000028893206,0.0003623888],"domain_scores_gemma":[0.999427,0.00017041058,0.000145186,0.00007443693,0.0000042585402,0.00017870923],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005362525,0.0002489873,0.00037379272,0.000017988561,0.000123276,0.000021738382,0.00013089282,0.00027400383,0.00040447435],"category_scores_gemma":[0.0000031916904,0.00013233555,0.000042549884,0.000049590224,0.00026258052,0.0000405367,0.00009268126,0.00010688068,0.0000934356],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038277693,0.000044393877,0.039406005,0.0000017960102,0.000040110663,5.881147e-7,0.000048554888,3.9026438e-7,0.9528021,0.000020187603,0.000101167156,0.007496432],"study_design_scores_gemma":[0.0002312149,0.0003826765,0.5593823,0.0000070932783,0.000019795787,0.0000040138266,0.00015191817,0.000011413782,0.43454427,0.00025115328,0.0047807833,0.00023335834],"about_ca_topic_score_codex":0.009386439,"about_ca_topic_score_gemma":0.0021121951,"teacher_disagreement_score":0.5199763,"about_ca_system_score_codex":0.00003016312,"about_ca_system_score_gemma":0.0000047142853,"threshold_uncertainty_score":0.99721014},"labels":[],"label_agreement":null},{"id":"W2136065953","doi":"10.1128/aem.01142-09","title":"Analyses of Current-Generating Mechanisms of <i>Shewanella loihica</i> PV-4 and <i>Shewanella oneidensis</i> MR-1 in Microbial Fuel Cells","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":134,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Exploratory Research for Advanced Technology; Institute of Genetics","keywords":"Shewanella oneidensis; Microbial fuel cell; Shewanella; Anode; Biology; Microbiology; Chemistry; Bacteria; Electrode; Genetics","score_opus":0.010594663096683827,"score_gpt":0.21316447365043542,"score_spread":0.2025698105537516,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136065953","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983775,0.00063852157,0.00017789834,0.000032929147,0.00008216879,0.00027296858,0.00009905083,0.000007967645,0.0003110066],"genre_scores_gemma":[0.99674195,0.0011498301,0.0016318426,0.00028506631,0.00002673797,0.0000028448028,0.00012514794,0.00001265571,0.000023911643],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984973,0.000057705267,0.00053328305,0.00050854683,0.00007811179,0.0003250675],"domain_scores_gemma":[0.99945325,0.00004217751,0.00024663168,0.00017792477,0.0000020002897,0.00007800643],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019890086,0.00026399028,0.000436757,0.000069052556,0.00005636922,0.0000098797145,0.0001443835,0.00017730785,0.00017758923],"category_scores_gemma":[0.0000024710355,0.00024348513,0.000060076633,0.0001196603,0.0004434764,0.00005179519,0.00018510956,0.0001607198,0.000019459641],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040597377,0.00018211214,0.0010814564,0.00003592099,0.00000940016,0.0000017283598,0.000217342,0.0002645472,0.9959104,0.000044618886,0.00015515249,0.0020566897],"study_design_scores_gemma":[0.0007399695,0.00014274487,0.0020867663,0.000017203643,0.00003732825,0.000018755529,0.00013833982,0.000049622497,0.99552387,0.00039251568,0.0006035952,0.00024930586],"about_ca_topic_score_codex":0.00010658411,"about_ca_topic_score_gemma":0.000052343115,"teacher_disagreement_score":0.001807384,"about_ca_system_score_codex":0.000050730137,"about_ca_system_score_gemma":0.000006396774,"threshold_uncertainty_score":0.9929036},"labels":[],"label_agreement":null},{"id":"W2136123856","doi":"10.1128/aem.01015-12","title":"Phosphate Starvation Promotes Swarming Motility and Cytotoxicity of Pseudomonas aeruginosa","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":119,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Cystic Fibrosis Foundation","keywords":"Swarming motility; Swarming (honey bee); Quorum sensing; Pseudomonas aeruginosa; Virulence; Microbiology; Motility; Biology; Cytotoxicity; Chemotaxis; Secretion; Phosphate; Pseudomonadaceae; Toxin; Bacteria; Cell biology; Gene; Biochemistry; In vitro; Genetics; Receptor","score_opus":0.005528834284969848,"score_gpt":0.18364380749246878,"score_spread":0.17811497320749894,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136123856","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99906576,0.0005457259,0.000027131786,0.00001921121,0.000054355158,0.0001453502,0.0000557978,0.0000042029387,0.000082446444],"genre_scores_gemma":[0.9986976,0.00016894138,0.0007087219,0.000093182374,0.00007138021,0.0000034489424,0.00023499731,0.000008686666,0.000013090674],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994073,0.000021716503,0.00014457527,0.00020619643,0.00001674744,0.00020347365],"domain_scores_gemma":[0.99976367,0.0000075116022,0.00007041469,0.00010307104,0.0000020395585,0.000053314092],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000109707405,0.00011986372,0.00013820664,0.000012949148,0.00005821412,0.0000040584046,0.000031232194,0.00013371436,0.000012536399],"category_scores_gemma":[0.0000033072201,0.000110264715,0.000020997564,0.000013546223,0.00023662379,0.000003689927,0.00012028889,0.000045749137,0.0000019206145],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004017037,0.000054141645,0.032507304,0.000013101281,0.000018835988,1.044591e-7,0.0000738007,3.3530276e-7,0.9653817,0.00004125215,0.000010480619,0.0018587718],"study_design_scores_gemma":[0.00028926384,0.000075613076,0.06260231,0.000002830463,0.000011666272,0.000026273317,0.0000816327,0.0000018748308,0.93579,0.000011079721,0.0010072791,0.0001001714],"about_ca_topic_score_codex":0.000013559299,"about_ca_topic_score_gemma":0.0000018049114,"teacher_disagreement_score":0.030095007,"about_ca_system_score_codex":0.000006762589,"about_ca_system_score_gemma":0.0000035121047,"threshold_uncertainty_score":0.44964647},"labels":[],"label_agreement":null},{"id":"W2136205818","doi":"10.1128/aem.69.3.1352-1358.2003","title":"Purification and Characterization of Brochocin A and Brochocin B(10-43), a Functional Fragment Generated by Heterologous Expression in <i>Carnobacterium piscicola</i>","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Heterologous; Heterologous expression; Biology; Fragment (logic); Computational biology; Molecular biology; Microbiology; Genetics; Recombinant DNA; Gene; Computer science; Algorithm","score_opus":0.004646972818604902,"score_gpt":0.14737327738654932,"score_spread":0.1427263045679444,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136205818","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99915534,0.00027892884,0.000019967278,0.00007099147,0.000024362895,0.00020743045,0.00020172239,0.0000067081896,0.000034535613],"genre_scores_gemma":[0.99758184,0.0005284022,0.000052672956,0.00020216375,0.000012270262,0.000018802533,0.0015490042,0.0000014720598,0.000053381398],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99928534,0.00005066087,0.00018713246,0.00029784144,0.000027117554,0.00015191881],"domain_scores_gemma":[0.9998194,0.00001810456,0.00008342405,0.00003156302,0.0000024486358,0.0000450883],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006613595,0.0001241817,0.00015153187,0.000013642178,0.00007345333,0.000012703789,0.00003364808,0.00014230362,0.00008343234],"category_scores_gemma":[0.000001296574,0.00006604508,0.000012499272,0.000044341698,0.00012809531,0.00003701762,0.00004813863,0.00007078606,0.0000016585245],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004859181,0.00012951058,0.0055709872,0.000005445107,0.000005776149,1.8837441e-7,0.00004365703,5.2314675e-7,0.99142474,0.000017734032,0.00003295624,0.002719878],"study_design_scores_gemma":[0.0007067191,0.00027871682,0.32863453,0.000010481977,0.000009543364,0.000022947055,0.0001710051,0.000011607127,0.6647649,0.000053926888,0.005152287,0.00018335186],"about_ca_topic_score_codex":0.000007067988,"about_ca_topic_score_gemma":0.0000066278512,"teacher_disagreement_score":0.32665986,"about_ca_system_score_codex":0.0000179138,"about_ca_system_score_gemma":0.0000015669863,"threshold_uncertainty_score":0.26932403},"labels":[],"label_agreement":null},{"id":"W2136220169","doi":"10.1128/aem.00546-14","title":"Molecular Method for Detection of Total Coliforms in Drinking Water Samples","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fecal contamination and water quality","field":"Environmental Science","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval","funders":"","keywords":"16S ribosomal RNA; Fecal coliform; Agar; Biology; Escherichia coli; Microbiology; Feces; Enterobacteriaceae; Agar plate; Polymerase chain reaction; Bacteria; Veterinary medicine; Food science; Water quality; Gene; Ecology; Medicine; Genetics","score_opus":0.006026356244642967,"score_gpt":0.2051343007211101,"score_spread":0.19910794447646715,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136220169","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9597511,0.000005623322,0.03968931,0.000034637975,0.00002466591,0.00020115508,0.000009697211,0.00000598164,0.00027782586],"genre_scores_gemma":[0.99740565,0.0000022776271,0.0022644282,0.0001981082,0.000006201748,0.00003150471,0.00006191536,0.0000069012285,0.000022993356],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993713,0.00004257134,0.00017070393,0.00021584675,0.000026595402,0.00017299883],"domain_scores_gemma":[0.9998222,0.000039948234,0.00003470394,0.00007643098,4.0346598e-7,0.000026319954],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028567162,0.000088307235,0.00013997046,0.000022578757,0.000038984814,0.0000035715814,0.000046955003,0.000076576274,0.000086178494],"category_scores_gemma":[0.0000027584917,0.0000666244,0.000027430948,0.000018449786,0.00013120791,0.000027033648,0.000103114864,0.00004717934,0.000017710512],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022725659,0.000029927454,0.0031289088,0.000005681478,0.0000037125924,9.846247e-8,0.00019833757,0.00014688805,0.97745657,0.00028001823,0.0000016219691,0.018725513],"study_design_scores_gemma":[0.0005642781,0.00008377197,0.021574784,0.0000016398019,0.000005630129,0.0000069838297,0.000086730644,0.00049759005,0.9738401,0.0011440195,0.0020880494,0.00010639516],"about_ca_topic_score_codex":0.00008161447,"about_ca_topic_score_gemma":0.000039639006,"teacher_disagreement_score":0.037654568,"about_ca_system_score_codex":0.000046343626,"about_ca_system_score_gemma":4.2895783e-7,"threshold_uncertainty_score":0.2716864},"labels":[],"label_agreement":null},{"id":"W2136341331","doi":"10.1128/aem.71.9.5391-5398.2005","title":"Assessment of <i>cry1</i> Gene Contents of <i>Bacillus thuringiensis</i> Strains by Use of DNA Microarrays","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect Resistance and Genetics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Bacillus thuringiensis; DNA microarray; Biology; Gene; Oligonucleotide; Genetics; Microarray; DNA; DNA sequencing; Hybridization probe; Molecular biology; Computational biology; Gene expression; Bacteria","score_opus":0.005741957113498092,"score_gpt":0.19005110787245544,"score_spread":0.18430915075895735,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136341331","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975623,0.00084937614,0.00027335732,0.0000134480815,0.000026979731,0.00016203184,0.0008894165,0.0000019944407,0.0002211036],"genre_scores_gemma":[0.9953946,0.0011807175,0.002418611,0.0002121859,0.000025418813,0.000005890882,0.0006409467,0.000014798571,0.00010681679],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991214,0.000023464707,0.00033925363,0.00027267277,0.000043822012,0.00019938694],"domain_scores_gemma":[0.999518,0.00000924327,0.00019107503,0.00023331714,0.0000087825265,0.000039606566],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005653613,0.00016128186,0.00027396134,0.000024504607,0.000027428618,0.0000023459356,0.00010721953,0.00016741552,0.000016502878],"category_scores_gemma":[0.0000017754909,0.00015518037,0.00006966826,0.000022537706,0.00042715564,0.0000027051053,0.000115392315,0.00005539443,8.596366e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004213591,0.00018896881,0.004517677,0.00002349445,0.00008623856,2.6312026e-7,0.000035376754,0.000049134655,0.9936313,0.000030184789,0.00040611433,0.0009890987],"study_design_scores_gemma":[0.0007602807,0.00022787922,0.0077928216,0.0000054045663,0.00002893786,0.000010262505,0.00008062252,0.0000026127464,0.97775936,0.000004240072,0.013190222,0.00013733479],"about_ca_topic_score_codex":0.000009740753,"about_ca_topic_score_gemma":0.000011902963,"teacher_disagreement_score":0.01587193,"about_ca_system_score_codex":0.00001304394,"about_ca_system_score_gemma":0.000013620167,"threshold_uncertainty_score":0.6328072},"labels":[],"label_agreement":null},{"id":"W2136351852","doi":"10.1128/aem.00058-10","title":"Comparative Transcriptome and Secretome Analysis of Wood Decay Fungi<i>Postia placenta</i>and<i>Phanerochaete chrysosporium</i>","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme-mediated dye degradation","field":"Agricultural and Biological Sciences","cited_by":244,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Phanerochaete; Chrysosporium; Transcriptome; Cellulase; Biology; Extracellular; Cellulose; Cell wall; Biochemistry; Botany; Gene; Microbiology; Gene expression; Enzyme","score_opus":0.005407269753269158,"score_gpt":0.17551029195096293,"score_spread":0.17010302219769377,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136351852","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99851567,0.0005108605,0.0000042211386,0.00009412962,0.000051650593,0.00017552944,0.00052168214,0.00001723355,0.00010901912],"genre_scores_gemma":[0.99774927,0.00040965882,0.000081655584,0.00017319954,0.000031735537,0.000010998407,0.0015187191,0.000001391617,0.000023349321],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991343,0.000029319006,0.00021333683,0.00036815196,0.00004483853,0.00021005957],"domain_scores_gemma":[0.9996287,0.00012294746,0.000095820615,0.00005232291,0.0000036000285,0.00009657935],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009810529,0.00017924202,0.00036944964,0.000037245245,0.00009756102,0.000012241893,0.00008553607,0.00017255286,0.00016901425],"category_scores_gemma":[0.000001032233,0.00008844967,0.00004213806,0.00016830908,0.00040319216,0.000049335362,0.00006900713,0.00016167323,0.0000054066986],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004202833,0.00004637277,0.011481547,0.0000037182858,0.00013501977,6.7446183e-7,0.00039247578,0.0000014116866,0.9859146,0.00012628648,0.00001852398,0.0018373487],"study_design_scores_gemma":[0.00088353397,0.00034590703,0.49275103,0.000005509805,0.0006220398,0.000056325567,0.0015593403,0.00007238841,0.49762052,0.000073705676,0.0055218274,0.00048787714],"about_ca_topic_score_codex":0.000046249508,"about_ca_topic_score_gemma":0.00038731264,"teacher_disagreement_score":0.48829406,"about_ca_system_score_codex":0.000008091191,"about_ca_system_score_gemma":0.000001676672,"threshold_uncertainty_score":0.3606873},"labels":[],"label_agreement":null},{"id":"W2136352433","doi":"10.1128/aem.00726-09","title":"Culture-Independent Characterization of Archaeal Biodiversity in Swine Confinement Building Bioaerosols","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Indoor Air Quality and Microbial Exposure","field":"Environmental Science","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique; Agriculture and Agri-Food Canada; Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec","funders":"","keywords":"Archaea; Indoor bioaerosol; 16S ribosomal RNA; Biology; Manure; Temperature gradient gel electrophoresis; Bacteria; Microbial ecology; Ribosomal RNA; Biodiversity; Microbiology; Ecology; Gene; Genetics","score_opus":0.004959747416224657,"score_gpt":0.18261811110110024,"score_spread":0.1776583636848756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136352433","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99871886,0.0000176115,0.00017459437,0.00019005517,0.000038352882,0.00026640313,0.00012372996,0.000009883457,0.0004605298],"genre_scores_gemma":[0.998568,0.00009385677,0.00029138094,0.00065083883,0.000011980207,0.0000031741672,0.00032649373,0.0000031652587,0.000051128565],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991089,0.00003416596,0.00024987338,0.00031368423,0.000050688428,0.00024267488],"domain_scores_gemma":[0.9997343,0.0000071983773,0.000100497455,0.00011008103,6.9398214e-7,0.000047220226],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014058541,0.00014909463,0.00020796813,0.000033478394,0.00007188072,0.000005168886,0.00011795629,0.00013111638,0.0004124708],"category_scores_gemma":[0.0000011463902,0.00014191945,0.000032617267,0.000059402377,0.0002926782,0.000049064507,0.00014748969,0.00011824972,0.000054813296],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004956302,0.00015833438,0.009395972,0.0000045974175,0.0000058748315,0.0000024827007,0.000697107,0.00001551929,0.98624384,0.00020440943,0.00004817151,0.0031741243],"study_design_scores_gemma":[0.0016360516,0.00030841018,0.22438642,0.000011469628,0.000016537319,0.000032048985,0.0003484436,0.000008512153,0.76552844,0.00019399938,0.007211065,0.0003186012],"about_ca_topic_score_codex":0.00008824506,"about_ca_topic_score_gemma":0.000022673657,"teacher_disagreement_score":0.2207154,"about_ca_system_score_codex":0.00009154015,"about_ca_system_score_gemma":0.0000026429614,"threshold_uncertainty_score":0.5787307},"labels":[],"label_agreement":null},{"id":"W2136364612","doi":"10.1128/aem.01134-15","title":"Genes Associated with Desiccation and Osmotic Stress in Listeria monocytogenes as Revealed by Insertional Mutagenesis","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Desiccation; Biology; Mutant; Transposable element; Transposon mutagenesis; Virulence; Listeria monocytogenes; Mutagenesis; Insertional mutagenesis; Flagellum; Microbiology; Gene; Genetics; Bacteria; Botany","score_opus":0.023997365973817412,"score_gpt":0.23115709279434227,"score_spread":0.20715972682052486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136364612","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997481,0.001851151,0.000053788157,0.000051333394,0.000041723237,0.00023311672,0.00018127057,0.000007883142,0.00009877451],"genre_scores_gemma":[0.9966857,0.00043751294,0.00025263015,0.00026300008,0.000033746026,0.000052012656,0.0021242786,0.00002430997,0.0001268521],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99904114,0.00007234398,0.00019382869,0.00043864755,0.000039074814,0.00021495708],"domain_scores_gemma":[0.9996482,0.000013673668,0.00008446945,0.00016078594,0.0000054724314,0.00008736009],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000115988936,0.00019841977,0.00018652444,0.00003168821,0.000054531596,0.000014453334,0.00009149744,0.0002029981,0.000008647443],"category_scores_gemma":[0.000007988167,0.00018378519,0.000015645921,0.000035792295,0.00025529705,0.0000059351228,0.00019305236,0.000046482437,0.0000045272186],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024607315,0.00008435489,0.08210782,0.000006535253,0.00004775749,0.0000023755001,0.0000699455,0.000030592208,0.91623294,0.000011776411,0.000064800166,0.0010950556],"study_design_scores_gemma":[0.003264746,0.0007062286,0.07568014,0.000017491253,0.000051939445,0.00016568853,0.00057519437,0.0000138634605,0.9148551,0.0001057742,0.004030867,0.00053291954],"about_ca_topic_score_codex":0.000028707162,"about_ca_topic_score_gemma":0.00005699771,"teacher_disagreement_score":0.0064276806,"about_ca_system_score_codex":0.00005426309,"about_ca_system_score_gemma":0.0000244736,"threshold_uncertainty_score":0.7494542},"labels":[],"label_agreement":null},{"id":"W2136380020","doi":"10.1128/aem.69.3.1347-1351.2003","title":"Biotransformation of Hexahydro-1,3,5-Trinitro-1,3,5-Triazine (RDX) by a Rabbit Liver Cytochrome P450: Insight into the Mechanism of RDX Biodegradation by <i>Rhodococcus</i> sp. Strain DN22","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Chemical Reactions and Isotopes","field":"Pharmacology, Toxicology and Pharmaceutics","cited_by":102,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"","keywords":"Biotransformation; Metabolite; Rhodococcus; Cytochrome; Chemistry; Cytochrome P450; Strain (injury); Biodegradation; Stereochemistry; Biochemistry; Enzyme; Organic chemistry; Biology","score_opus":0.018368059696818772,"score_gpt":0.2709627064048468,"score_spread":0.25259464670802806,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136380020","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99400955,0.001659146,0.00074690674,0.00019229557,0.00007318558,0.00062920636,0.0010510131,0.0000180403,0.0016206396],"genre_scores_gemma":[0.99462825,0.003327366,0.00019436718,0.0005533823,0.000018196,0.000051556442,0.0011089711,0.000016965645,0.00010094415],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998683,0.00017693364,0.0004940791,0.0003025283,0.00006294976,0.00028051657],"domain_scores_gemma":[0.9992837,0.00022559614,0.00023005436,0.00016431564,0.000007653059,0.000088715686],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032892587,0.00024962577,0.00034714246,0.00006217913,0.00016343311,0.0000064770843,0.00015901981,0.00033414701,0.0006521839],"category_scores_gemma":[0.00000968809,0.00019400584,0.00008205292,0.000117129086,0.0006009651,0.00007697098,0.000054721113,0.00037727066,0.000029372966],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000118589116,0.000349793,0.00006182882,0.000036214304,0.000111005895,6.152358e-7,0.0006399046,0.000005818832,0.9915378,0.0026779901,0.0008871399,0.003573318],"study_design_scores_gemma":[0.0014595003,0.00012370491,0.00006823808,0.0000047049543,0.000090035915,0.000025668662,0.0002934651,0.000038119488,0.83657646,0.0004219776,0.16072801,0.00017013751],"about_ca_topic_score_codex":0.00003445727,"about_ca_topic_score_gemma":0.0000038263224,"teacher_disagreement_score":0.15984087,"about_ca_system_score_codex":0.00006211784,"about_ca_system_score_gemma":0.000016534636,"threshold_uncertainty_score":0.79113287},"labels":[],"label_agreement":null},{"id":"W2136488776","doi":"10.1128/aem.69.11.6777-6784.2003","title":"Binding of Pediocin PA-1 with Anionic Lipid Induces Model Membrane Destabilization","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Novalait; Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Dairy Farmers of Canada","keywords":"Bacteriocin; Membrane; Phospholipid; Chemistry; Fourier transform infrared spectroscopy; Infrared spectroscopy; Methylene; Biophysics; Amide; Peptide; Crystallography; POPC; Hydrophobic effect; Stereochemistry; Organic chemistry; Chemical engineering; Antimicrobial; Biochemistry; Biology","score_opus":0.008297565836933052,"score_gpt":0.16001781663996656,"score_spread":0.1517202508030335,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136488776","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.999122,0.00007060911,0.000026603499,0.00003477403,0.000016396625,0.00013457093,0.000056829438,0.000009520116,0.0005286489],"genre_scores_gemma":[0.9992425,0.00018482181,0.00027750543,0.00005566478,0.000013372988,0.000005761256,0.0001872586,0.00000128425,0.000031845124],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994498,0.000020511965,0.0001262944,0.00021193344,0.000026946795,0.00016454267],"domain_scores_gemma":[0.9998383,0.000024265046,0.00006426159,0.000033708162,0.0000020072757,0.000037440594],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007467979,0.00010709848,0.00013511683,0.000009017638,0.000088947185,0.0000064021788,0.000059161946,0.00009605054,0.000076086915],"category_scores_gemma":[0.0000013675578,0.00004385056,0.000018406208,0.00005895255,0.00014964011,0.0000275144,0.000032435226,0.00006205623,0.0000040860073],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015235157,0.00007045195,0.0020733625,0.0000046054934,0.000008680646,1.4369444e-7,0.00004710368,0.00005584505,0.99563575,0.0009859662,0.0000044492763,0.0010984361],"study_design_scores_gemma":[0.00060211244,0.0005546958,0.004676426,0.00001363632,0.000035222427,0.000048438193,0.0011007988,0.000099997764,0.9910109,0.00031343056,0.0012189958,0.00032531534],"about_ca_topic_score_codex":0.0000037121758,"about_ca_topic_score_gemma":0.00000923352,"teacher_disagreement_score":0.0046247896,"about_ca_system_score_codex":0.000014956536,"about_ca_system_score_gemma":0.0000031685597,"threshold_uncertainty_score":0.17881739},"labels":[],"label_agreement":null},{"id":"W2136570675","doi":"10.1128/aem.02701-13","title":"Development of a Tetracycline-Inducible Gene Expression System for the Study of Helicobacter pylori Pathogenesis","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Helicobacter pylori; Pathogenesis; Tetracycline; Biology; Gene; Genetics; Gene expression; Microbiology; Computational biology; Immunology; Antibiotics","score_opus":0.013398999099947255,"score_gpt":0.21268772531224578,"score_spread":0.1992887262122985,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136570675","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99783325,0.00021476159,0.00017599364,0.00006365009,0.00008871637,0.0015557695,0.00003708192,0.000011577549,0.000019182102],"genre_scores_gemma":[0.9963588,0.00004771115,0.0029500304,0.00007718558,0.000034879613,0.0004285309,0.000057591475,0.000018695628,0.000026559463],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988941,0.00002731849,0.00048668843,0.00030754402,0.000047065183,0.00023729906],"domain_scores_gemma":[0.99943304,0.00008156319,0.00017504786,0.00024935213,0.000012699341,0.000048296628],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013483355,0.0001822258,0.00042513869,0.000055279997,0.00011214449,0.0000023585878,0.00008978341,0.00011983482,0.000023163342],"category_scores_gemma":[0.0000039904508,0.00011502407,0.000043111482,0.00003918352,0.0001742437,0.000018586925,0.00016219013,0.0000928971,0.000014231771],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014813662,0.00043709317,0.04984322,0.00006075737,0.0003327816,7.450602e-7,0.0014959231,0.0000018081386,0.9440048,0.0000013888906,0.000035696357,0.0036377043],"study_design_scores_gemma":[0.0033093097,0.0006115531,0.253905,0.000033224343,0.00021587199,0.000053669963,0.011217701,0.000004718135,0.72983706,0.0000011289227,0.0007026348,0.00010812561],"about_ca_topic_score_codex":0.000011150057,"about_ca_topic_score_gemma":0.000003893688,"teacher_disagreement_score":0.21416768,"about_ca_system_score_codex":0.000043956003,"about_ca_system_score_gemma":0.000009684414,"threshold_uncertainty_score":0.46905455},"labels":[],"label_agreement":null},{"id":"W2136580306","doi":"10.1128/aem.72.1.384-391.2006","title":"Isolation of Poly-3-Hydroxybutyrate Metabolism Genes from Complex Microbial Communities by Phenotypic Complementation of Bacterial Mutants","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Amino Acid Enzymes and Metabolism","field":"Biochemistry, Genetics and Molecular Biology","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; University of Waterloo; Toyota Research Institute, North America; BIOCAP Canada","keywords":"Complementation; Sinorhizobium meliloti; Biology; Cosmid; Transposon mutagenesis; Mutant; Gene; Genetics; Escherichia coli; Plasmid; Protein-fragment complementation assay; Biochemistry; Transposable element","score_opus":0.005693207870935457,"score_gpt":0.1853304727102693,"score_spread":0.17963726483933384,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136580306","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9927463,0.0028571303,0.0010935675,0.000010884934,0.000096816424,0.00014701717,0.0029363194,0.000003997686,0.00010798487],"genre_scores_gemma":[0.97900337,0.0004220253,0.001625303,0.000090255475,0.00011469049,0.0000069326006,0.018684939,0.00001619838,0.000036258498],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99922544,0.00005464877,0.000330472,0.00019042463,0.00003275692,0.0001662495],"domain_scores_gemma":[0.9995921,0.000011759643,0.00020461752,0.00016264911,0.0000053444046,0.000023478337],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000051438197,0.00016625793,0.0002741997,0.000026711808,0.00006286424,0.00000585833,0.00011605253,0.00012857813,0.00017994455],"category_scores_gemma":[4.7264263e-7,0.00016713292,0.000046543075,0.00001935873,0.0003439593,0.000004722787,0.0001336869,0.000043475928,0.0000025181198],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012789882,0.00008980967,0.0018646371,0.00000678749,0.0000569187,6.274808e-8,0.00009754657,0.000007759403,0.9959016,0.0001161428,0.0004291137,0.001301756],"study_design_scores_gemma":[0.0013863179,0.000062365914,0.019880382,0.0000022901888,0.000052186977,0.0000044389717,0.00044112917,0.000012452894,0.9605718,0.00007311538,0.017352099,0.00016138545],"about_ca_topic_score_codex":0.000758152,"about_ca_topic_score_gemma":0.00009514398,"teacher_disagreement_score":0.03532973,"about_ca_system_score_codex":0.000006839247,"about_ca_system_score_gemma":0.000006771623,"threshold_uncertainty_score":0.68154824},"labels":[],"label_agreement":null},{"id":"W2136723907","doi":"10.1128/aem.71.8.4248-4253.2005","title":"Naturally Occurring DNA Transfer System Associated with Membrane Vesicles in Cellulolytic <i>Ruminococcus</i> spp. of Ruminal Origin","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":106,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Ruminococcus; DNA; genomic DNA; Biochemistry; Population; Molecular biology; Bacteria; Genetics","score_opus":0.0037336703256803014,"score_gpt":0.16064407008645798,"score_spread":0.15691039976077767,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136723907","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99835587,0.00097565126,0.000013594378,0.000019964085,0.00002596815,0.00019286301,0.00010112227,0.0000029950234,0.00031200124],"genre_scores_gemma":[0.99936974,0.00015032048,0.00014188506,0.000098613586,0.000046383055,0.000015925802,0.00013214657,0.000015883435,0.00002912579],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991705,0.00002415845,0.00021967794,0.000311585,0.00002931906,0.0002447613],"domain_scores_gemma":[0.9997763,0.0000145778085,0.00004832588,0.00012137636,0.0000029155667,0.00003649466],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008269167,0.00018118513,0.000241298,0.00003098783,0.000044397835,0.0000039952074,0.00009639728,0.000101044316,0.0000063553725],"category_scores_gemma":[0.0000010945539,0.00015471783,0.000035191657,0.00003131095,0.00021644642,9.4543805e-7,0.000062080995,0.00007685302,0.0000037257091],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009178587,0.00005514414,0.00674115,0.000023294904,0.00007069361,0.0000030139113,0.00008577412,0.000117194046,0.99221474,0.00005654524,0.00000996585,0.000530706],"study_design_scores_gemma":[0.0016719955,0.00023685134,0.017480334,0.00002716433,0.000042911935,0.0000720723,0.00053648074,0.000019376208,0.9758826,0.0000032798985,0.0037548754,0.0002720826],"about_ca_topic_score_codex":0.000009766146,"about_ca_topic_score_gemma":0.000060265702,"teacher_disagreement_score":0.016332157,"about_ca_system_score_codex":0.00003115387,"about_ca_system_score_gemma":0.000011597359,"threshold_uncertainty_score":0.630921},"labels":[],"label_agreement":null},{"id":"W2137007705","doi":"10.1128/aem.02702-07","title":"Involvement of Fumarase C and NADH Oxidase in Metabolic Adaptation of<i>Pseudomonas fluorescens</i>Cells Evoked by Aluminum and Gallium Toxicity","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Aluminum toxicity and tolerance in plants and animals","field":"Agricultural and Biological Sciences","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Laurentian University","funders":"","keywords":"Fumarase; Pseudomonas fluorescens; Aconitase; Biochemistry; Enzyme; Citric acid cycle; Metabolism; Oxidative phosphorylation; Pseudomonas; Biology; Metabolic pathway; Chemistry; Bacteria","score_opus":0.009927340621800961,"score_gpt":0.16542279396255827,"score_spread":0.15549545334075732,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137007705","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977741,0.0015900115,0.000002163156,0.000046562895,0.000015666445,0.00017120005,0.00035975745,0.000004108607,0.000036415426],"genre_scores_gemma":[0.9958593,0.0037210858,0.000089599045,0.00012369377,0.000016002345,0.000007731819,0.00014995392,0.0000011338133,0.000031464802],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99926454,0.00003380165,0.0002282268,0.0002592855,0.00004170249,0.00017243918],"domain_scores_gemma":[0.99974567,0.000064521286,0.00010155171,0.000031116677,0.0000023419477,0.0000548283],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009331204,0.00013747679,0.00028716016,0.000013384773,0.00008104135,0.0000039028855,0.00005530777,0.00010610705,0.00004073993],"category_scores_gemma":[0.0000014142382,0.00007109415,0.000023836352,0.000042819476,0.0004604538,0.00004172127,0.00006882513,0.0000712113,0.0000011448902],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000061480045,0.00014961568,0.010792259,0.00001092021,0.000011419629,0.0000023663172,0.00023177692,0.0000020335049,0.984364,0.00005221827,0.000066861394,0.004255091],"study_design_scores_gemma":[0.0007773852,0.00028267075,0.101295754,0.000016243002,0.000017299712,0.00003946443,0.0010952441,0.000046191162,0.8927056,0.00007440971,0.0034250703,0.00022465584],"about_ca_topic_score_codex":0.000271181,"about_ca_topic_score_gemma":0.00012728276,"teacher_disagreement_score":0.09165835,"about_ca_system_score_codex":0.0000060547627,"about_ca_system_score_gemma":0.0000022409079,"threshold_uncertainty_score":0.28991354},"labels":[],"label_agreement":null},{"id":"W2137023199","doi":"10.1128/aem.01564-10","title":"Variation in<i>Listeria monocytogenes</i>Dose Responses in Relation to Subtypes Encoding a Full-Length or Truncated Internalin A","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"U.S. Department of Agriculture","keywords":"Listeria monocytogenes; Biology; Virulence; Frameshift mutation; Gene; Microbiology; Transcriptome; Mutation; Genetics; Bacteria; Gene expression","score_opus":0.023013059073022982,"score_gpt":0.26209509296065164,"score_spread":0.23908203388762866,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137023199","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99899405,0.000061993065,0.00013169588,0.000088998866,0.0002028739,0.0003327153,0.000062596264,0.000008369071,0.00011673033],"genre_scores_gemma":[0.9977796,0.00010333148,0.0012007114,0.00040934785,0.00007385298,0.00006889203,0.00024815107,0.000022409587,0.00009371783],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99885726,0.00007231673,0.0003170341,0.00048471708,0.000027469687,0.00024121386],"domain_scores_gemma":[0.99959004,0.000031736938,0.000078063786,0.0002415168,0.0000027762803,0.000055837576],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023677759,0.00018542961,0.00018378772,0.00010058454,0.00004152694,0.000014394792,0.0001439393,0.0003667861,0.00004999097],"category_scores_gemma":[0.000031767973,0.0001740219,0.00002505862,0.00007093159,0.00009101705,0.0000065920003,0.00028190503,0.00017624587,0.000017408593],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023831427,0.00006459812,0.010538299,0.000006156767,0.000014582124,0.0000052085556,0.0003217497,0.00003473731,0.9855145,0.000043544693,0.000009379897,0.001064066],"study_design_scores_gemma":[0.0023314878,0.0005374133,0.33054772,0.00001899201,0.000016946178,0.00021022439,0.00025723665,0.00005089726,0.6548372,0.000077118966,0.0106146615,0.0005001301],"about_ca_topic_score_codex":0.0000411138,"about_ca_topic_score_gemma":0.0004951074,"teacher_disagreement_score":0.33067736,"about_ca_system_score_codex":0.000049645434,"about_ca_system_score_gemma":0.000022016353,"threshold_uncertainty_score":0.70964074},"labels":[],"label_agreement":null},{"id":"W2137106589","doi":"10.1128/aem.01982-07","title":"Role of Migratory Birds in Introduction and Range Expansion of <i>Ixodes scapularis</i> Ticks and of <i>Borrelia burgdorferi</i> and <i>Anaplasma phagocytophilum</i> in Canada","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":378,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Queen's University; Birds Canada; International Development Research Centre; University of Guelph; Université de Montréal; Public Health Agency of Canada","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases; Natural Resources Canada; National Institutes of Health","keywords":"Ixodes scapularis; Anaplasma phagocytophilum; Borrelia burgdorferi; Biology; Anaplasmosis; Lyme disease; Nymph; Tick; Anaplasma; Borrelia; Veterinary medicine; Ixodidae; Virology; Zoology; Immunology; Medicine","score_opus":0.0024862593257211647,"score_gpt":0.1468855682173325,"score_spread":0.14439930889161134,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137106589","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98803073,0.011458706,0.0000011114043,0.000025476314,0.000058776197,0.00021329989,0.000184176,0.000004255811,0.000023469773],"genre_scores_gemma":[0.9964843,0.0033049707,0.00002238541,0.000062554915,0.000009617964,0.000012564904,0.000084966116,0.000011802824,0.000006868119],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990184,0.00007642058,0.0003642224,0.00032604556,0.000016204569,0.00019872341],"domain_scores_gemma":[0.99963254,0.00006966706,0.00014057518,0.00012655355,0.000004350262,0.000026310629],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000831417,0.00017672929,0.0004567519,0.00011053132,0.000042394247,9.816617e-7,0.000047860354,0.00017328477,0.000019758892],"category_scores_gemma":[0.0000059497315,0.00017377481,0.00001815377,0.00006374292,0.00086243916,0.000037771995,0.00010469725,0.00014259618,6.0106845e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000162147,0.00007430163,0.30334902,0.000036327947,0.000027275548,0.0000016655387,0.00025754527,0.000005074441,0.695114,0.000022972104,0.00007167039,0.00087796134],"study_design_scores_gemma":[0.0025588975,0.00020938518,0.37990916,0.000022290622,0.000039289433,0.0003142286,0.0012216663,0.000003300672,0.61471605,0.000051602634,0.0007606825,0.0001934448],"about_ca_topic_score_codex":0.076159716,"about_ca_topic_score_gemma":0.052067447,"teacher_disagreement_score":0.08039798,"about_ca_system_score_codex":0.00005567704,"about_ca_system_score_gemma":0.000059834274,"threshold_uncertainty_score":0.96522987},"labels":[],"label_agreement":null},{"id":"W2137188952","doi":"10.1128/aem.00484-10","title":"Requirement of the Nitrogen Starvation-Induced Protein Sll0783 for Polyhydroxybutyrate Accumulation in <i>Synechocystis</i> sp. Strain PCC 6803","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":122,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Deutsche Forschungsgemeinschaft; Public Health Agency of Canada","keywords":"Synechocystis; Polyhydroxybutyrate; Cyanobacteria; Mutant; Biochemistry; Biology; rpoN; Gene cluster; Gene; Bacteria; Nitrogen deficiency; Promoter; Gene expression; Chemistry; Nitrogen; Genetics","score_opus":0.012966849313566524,"score_gpt":0.21818901909491356,"score_spread":0.20522216978134702,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137188952","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981197,0.0000070993933,0.000033655506,0.00026691367,0.000094854186,0.0010114141,0.00017751756,0.0000081517655,0.00028066107],"genre_scores_gemma":[0.99862736,0.000005080826,0.00048880244,0.00045621872,0.000019368861,0.00009217662,0.00026064285,0.000012888453,0.000037451395],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99898654,0.0000897181,0.00031157615,0.00029155822,0.000035164805,0.0002854374],"domain_scores_gemma":[0.99942654,0.00007930478,0.0001644827,0.00029227417,0.0000014394174,0.00003593505],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028633204,0.00016812197,0.00021033896,0.000027699987,0.0001816731,0.000004813802,0.0002712658,0.00023304137,0.0007380626],"category_scores_gemma":[0.000011038887,0.00013947967,0.000047103807,0.000071479546,0.0004748251,0.000056532517,0.00030430686,0.0002932933,0.00002456377],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006234047,0.00011162726,0.014209138,0.000007643333,0.000010619867,1.6861773e-7,0.00017826128,0.000063007516,0.98379606,0.00049496116,0.00008724304,0.0009789524],"study_design_scores_gemma":[0.0017618791,0.0002168607,0.09195149,0.000008886855,0.000023661067,0.000013836935,0.00021586251,0.00010859504,0.8884321,0.011185734,0.005742697,0.0003384048],"about_ca_topic_score_codex":0.00017633116,"about_ca_topic_score_gemma":0.0010996655,"teacher_disagreement_score":0.095363945,"about_ca_system_score_codex":0.000066755514,"about_ca_system_score_gemma":0.0000108166205,"threshold_uncertainty_score":0.80812675},"labels":[],"label_agreement":null},{"id":"W2137296587","doi":"10.1128/aem.00699-11","title":"Increased Persistence of Salmonella enterica Serovar Typhi in the Presence of Acanthamoeba castellanii","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Salmonella typhi; Biology; Microbiology; Bacteria; Salmonella enterica; Typhoid fever; Protozoa; Acanthamoeba; Serotype; Salmonella","score_opus":0.015646085571679496,"score_gpt":0.1989742858738854,"score_spread":0.18332820030220592,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137296587","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975099,0.00039088036,0.000015653066,0.000017110167,0.000015203966,0.000166183,0.00004595436,0.0000010874314,0.0018380188],"genre_scores_gemma":[0.9991106,0.00052233157,0.00014478862,0.00008566111,0.000015077766,0.000009864844,0.00007237909,0.000007051218,0.0000322493],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993125,0.000066905064,0.00017189673,0.00022985612,0.000039312523,0.00017949617],"domain_scores_gemma":[0.99966407,0.000023428589,0.00006901109,0.0002116739,0.0000032150317,0.000028575938],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001395197,0.0001027182,0.00014519072,0.000029001249,0.000027639704,0.0000016729493,0.0002321275,0.00010202665,0.000043241922],"category_scores_gemma":[0.0000050476224,0.00007530719,0.00003615228,0.000042003518,0.0005313689,0.0000017178041,0.0001639251,0.000076916265,0.0000036916267],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013980002,0.00012056571,0.018595971,0.000017878267,0.000018760225,0.000003102334,0.00054690754,9.351267e-7,0.9800025,0.000042484782,0.00007187597,0.00043921793],"study_design_scores_gemma":[0.0006878936,0.0004203869,0.0353885,0.000010427705,0.000014325796,0.00010726602,0.002774252,0.000007579865,0.95856506,0.000041777428,0.0018361862,0.00014632435],"about_ca_topic_score_codex":0.0001440078,"about_ca_topic_score_gemma":0.000014880082,"teacher_disagreement_score":0.02143742,"about_ca_system_score_codex":0.000005309304,"about_ca_system_score_gemma":0.000012069397,"threshold_uncertainty_score":0.3070938},"labels":[],"label_agreement":null},{"id":"W2137347189","doi":"10.1128/aem.71.12.8257-8264.2005","title":"Multiple Reductive-Dehalogenase-Homologous Genes Are Simultaneously Transcribed during Dechlorination by <i>Dehalococcoides-</i> Containing Cultures","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":126,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Dehalococcoides; Dehalogenase; Gene; Reductive dechlorination; Biology; Genetics; Chemistry; Biochemistry; Vinyl chloride; Biodegradation","score_opus":0.004261309580924599,"score_gpt":0.1787333034459183,"score_spread":0.1744719938649937,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137347189","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981382,0.0004377558,0.000035804456,0.00021467388,0.00008547674,0.00040087727,0.00030367845,0.00006780501,0.000315758],"genre_scores_gemma":[0.9977663,0.0004457992,0.00046514094,0.0005410247,0.000081755425,0.00002228174,0.00041289162,0.000026050038,0.00023873373],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984853,0.000050495746,0.00031438255,0.0006255277,0.0000785439,0.0004457217],"domain_scores_gemma":[0.99950755,0.000049632883,0.00015513203,0.00015787869,0.0000020631849,0.00012774777],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000101807214,0.00030793334,0.0002658536,0.00002984552,0.00027866807,0.000022344359,0.00017150815,0.00022656684,0.00073187455],"category_scores_gemma":[0.0000073840383,0.0002785306,0.000057116355,0.000066066306,0.00049233146,0.00010329596,0.00012488605,0.00017005713,0.00031399968],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011679021,0.00014295924,0.012209357,0.0000049526384,0.00002112896,0.0000069783114,0.00041575762,0.00021453005,0.9812111,0.0000036023496,0.0006685987,0.004984224],"study_design_scores_gemma":[0.0017765823,0.00009879395,0.012991413,0.0000063170874,0.000027791444,0.00017217472,0.0009312418,0.0000583907,0.94855666,0.000011944581,0.034854703,0.00051396305],"about_ca_topic_score_codex":0.000058873433,"about_ca_topic_score_gemma":0.00019908791,"teacher_disagreement_score":0.034186102,"about_ca_system_score_codex":0.00024391168,"about_ca_system_score_gemma":0.0000031068844,"threshold_uncertainty_score":0.9999667},"labels":[],"label_agreement":null},{"id":"W2137488386","doi":"10.1128/aem.72.2.1141-1147.2006","title":"Determination of Essential and Variable Residues in Pediocin PA-1 by NNK Scanning","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics","keywords":"Mutant; Antimicrobial; Bacteriocin; Peptide; Listeria monocytogenes; Biology; Biochemistry; Nisin; Residue (chemistry); Listeria; Genetics; Chemistry; Gene; Microbiology; Bacteria","score_opus":0.0023454564171642585,"score_gpt":0.15266382822799252,"score_spread":0.15031837181082824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137488386","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99896455,0.00033589476,0.000015739848,0.000054413325,0.000014038004,0.00008525198,0.00008488779,0.000004784806,0.00044044614],"genre_scores_gemma":[0.99922925,0.00010088058,0.00023954445,0.000040991563,0.000024414388,0.0000039125994,0.00030617497,6.93511e-7,0.000054121585],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99952775,0.000015028636,0.00013286434,0.00017473695,0.000017621522,0.00013196934],"domain_scores_gemma":[0.999891,0.00002672446,0.00004670094,0.000018014867,8.891563e-7,0.00001670202],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000065450535,0.00007506255,0.00011113901,0.000008680144,0.000048720365,0.000006843285,0.000040719886,0.0000884583,0.000038715167],"category_scores_gemma":[6.565342e-7,0.00003771517,0.000009541353,0.00003467491,0.00012850539,0.000021509733,0.00006072927,0.00004790071,9.899651e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011582159,0.00005155793,0.0108141955,0.0000036764477,0.0000016650858,3.6977198e-7,0.00001634035,7.8757535e-7,0.9845056,0.00025727795,0.000060388138,0.0042765685],"study_design_scores_gemma":[0.0011822936,0.00045880236,0.3561176,0.000028291031,0.000029357481,0.00003702515,0.0006986057,0.00010552659,0.63068604,0.0032790685,0.0069057927,0.0004715563],"about_ca_topic_score_codex":0.00019379017,"about_ca_topic_score_gemma":0.000052950047,"teacher_disagreement_score":0.35381952,"about_ca_system_score_codex":0.000010095552,"about_ca_system_score_gemma":8.373472e-7,"threshold_uncertainty_score":0.153798},"labels":[],"label_agreement":null},{"id":"W2137629614","doi":"10.1128/aem.02173-09","title":"Genome Organization and Characterization of the Virulent Lactococcal Phage 1358 and Its Similarities to <i>Listeria</i> Phages","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"ORFS; Siphoviridae; Biology; Capsid; Lactococcus lactis; Bacteriophage; Genome; Virulence; Phagemid; Genetics; GC-content; Phage display; Microbiology; Open reading frame; Gene; Bacteria; Escherichia coli; Peptide sequence","score_opus":0.002859108292972341,"score_gpt":0.16576425224013058,"score_spread":0.16290514394715824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137629614","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989245,0.000016260612,0.000021649646,0.00023356758,0.00011440912,0.00033358633,0.00020687365,0.000008826993,0.00014032026],"genre_scores_gemma":[0.99880314,0.000119868026,0.00006673351,0.0006753768,0.000028890301,0.00001189229,0.00011491146,0.00001362924,0.00016553733],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99940866,0.00001795874,0.00015252116,0.00025326735,0.000025966932,0.00014161048],"domain_scores_gemma":[0.99975204,0.000013336309,0.0000693207,0.00010692827,0.0000016509912,0.000056692897],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004705191,0.00012948268,0.00012894401,0.000016887701,0.00015067507,0.000021802934,0.00008433036,0.00010011462,0.0006939485],"category_scores_gemma":[0.000002953779,0.000102712416,0.000013085851,0.000048152506,0.00026461048,0.00008666431,0.0003957467,0.000119115015,0.000026502415],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009526694,0.000036919297,0.0023044185,0.000007192833,0.000006272555,3.0999863e-7,0.00037003728,8.464371e-7,0.9966462,0.000037938036,0.000010618187,0.0005697091],"study_design_scores_gemma":[0.00022706769,0.000034856006,0.45351103,0.0000028798356,0.000017003642,0.00008535875,0.0000736603,0.0000030714855,0.533452,0.000008667871,0.012461203,0.00012319053],"about_ca_topic_score_codex":0.000012983659,"about_ca_topic_score_gemma":0.000020287722,"teacher_disagreement_score":0.46319422,"about_ca_system_score_codex":0.000018596958,"about_ca_system_score_gemma":0.0000019361473,"threshold_uncertainty_score":0.75982493},"labels":[],"label_agreement":null},{"id":"W2137666859","doi":"10.1128/aem.01251-13","title":"Acetate Production from Oil under Sulfate-Reducing Conditions in Bioreactors Injected with Sulfate and Nitrate","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Reservoir Engineering and Simulation Methods","field":"Engineering","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Canada","keywords":"Sulfate; Nitrate; Bioreactor; Chemistry; Production (economics); Oil production; Pulp and paper industry; Sulfate-reducing bacteria; Environmental chemistry; Petroleum engineering; Organic chemistry; Engineering","score_opus":0.005215619906276665,"score_gpt":0.17788171533949795,"score_spread":0.17266609543322128,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137666859","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990639,0.00015744762,0.0003380216,0.00004254663,0.00006561956,0.00010962379,0.00003460255,0.0000710326,0.00011717484],"genre_scores_gemma":[0.9978169,0.00022601818,0.0015122707,0.0000151337235,0.000023329138,0.00003903721,0.00029914954,0.000023805314,0.00004433571],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994008,0.000021922726,0.00014393296,0.00022688677,0.000019374165,0.00018707004],"domain_scores_gemma":[0.99979013,0.00003924291,0.000019855197,0.0001001568,0.0000017415127,0.000048873855],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000044748034,0.00015350006,0.00015784442,0.00007497198,0.00004207771,0.000018384075,0.000033220174,0.00009153263,0.000054957505],"category_scores_gemma":[0.0000016007051,0.00013413822,0.000009141685,0.0000628018,0.000115043236,0.0000809912,0.000020880449,0.00014225488,0.000015464762],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000006525405,0.000010695491,0.0027601533,0.000010643624,0.00002600914,5.60083e-7,0.00015947156,0.12946084,0.86671454,0.000011236106,0.0000146860575,0.0008246547],"study_design_scores_gemma":[0.0040789507,0.00011438567,0.57193893,0.00008801099,0.00007206034,0.000091684175,0.001938356,0.029870609,0.3887759,0.001035673,0.00073304056,0.0012624061],"about_ca_topic_score_codex":0.00016634696,"about_ca_topic_score_gemma":0.000018269006,"teacher_disagreement_score":0.5691788,"about_ca_system_score_codex":0.000035333887,"about_ca_system_score_gemma":0.0000021877818,"threshold_uncertainty_score":0.54699975},"labels":[],"label_agreement":null},{"id":"W2137696890","doi":"10.1128/aem.70.6.3213-3221.2004","title":"Characterization and Heterologous Gene Expression of a Novel Esterase from<i>Lactobacillus casei</i>CL96","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme Catalysis and Immobilization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; McGill University; Biotechnology Research Institute","funders":"","keywords":"Biochemistry; Lactobacillus casei; Biology; Pichia pastoris; Molecular biology; Escherichia coli; Alcohol dehydrogenase; Alcohol oxidase; Heterologous expression; Open reading frame; Esterase; Affinity chromatography; Enzyme; Peptide sequence; Recombinant DNA; Gene; Fermentation","score_opus":0.004427163869345822,"score_gpt":0.17362352219046753,"score_spread":0.1691963583211217,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137696890","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9931346,0.0002922837,0.0060334606,0.000014147063,0.000029311823,0.0001272158,0.00035538804,0.000003787226,0.000009805468],"genre_scores_gemma":[0.9920442,0.0003710673,0.00068076287,0.00025756584,0.000038939055,0.000012735018,0.0065676086,0.000011772803,0.00001536719],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99939114,0.000010837766,0.00015965795,0.00030702716,0.000018904742,0.00011244928],"domain_scores_gemma":[0.99972594,0.0000043808714,0.00008513227,0.00014298323,0.0000025672925,0.00003902792],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000030029241,0.00012379004,0.00014213746,0.000020518319,0.00004449538,0.0000054660463,0.000044259345,0.00014843112,0.000008237442],"category_scores_gemma":[0.0000021681212,0.00011264854,0.000023326806,0.000015850801,0.00015576335,0.000004344048,0.000110954956,0.0000368138,0.0000016812895],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005832012,0.00010108475,0.0012988664,0.0000052823157,0.00001616299,6.0133397e-7,0.00007521884,0.000028623235,0.9979099,0.0000068237687,0.0000030713998,0.0004960328],"study_design_scores_gemma":[0.001139706,0.00013101727,0.005205499,0.000004873948,0.00001749003,0.00004033366,0.00004866084,0.0000032620744,0.99250484,0.0000062556664,0.0007831357,0.00011491127],"about_ca_topic_score_codex":0.000012059149,"about_ca_topic_score_gemma":0.000004585523,"teacher_disagreement_score":0.0062122205,"about_ca_system_score_codex":0.000009481851,"about_ca_system_score_gemma":0.000004957149,"threshold_uncertainty_score":0.4593674},"labels":[],"label_agreement":null},{"id":"W2137948741","doi":"10.1128/aem.71.11.6633-6643.2005","title":"Detection, Characterization, and In Vitro and In Vivo Expression of Genes Encoding S-Proteins in <i>Lactobacillus gallinarum</i> Strains Isolated from Chicken Crops","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Directorate for Biological Sciences","keywords":"Biology; Gene; Microbiology; Lactobacillus; Strain (injury); Gene expression; Bacteria; Molecular biology; Genetics","score_opus":0.004377137007226945,"score_gpt":0.17753461042960827,"score_spread":0.17315747342238133,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137948741","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992076,0.000107872416,0.00012918493,0.000056366036,0.000025290034,0.00025129452,0.00016064849,0.0000063571433,0.000055366294],"genre_scores_gemma":[0.99869245,0.0006639785,0.00036635646,0.000105207626,0.000015828688,0.000019122064,0.00009966042,0.000011339747,0.000026078525],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990611,0.00003889383,0.0003048339,0.00036690492,0.000022958266,0.0002052772],"domain_scores_gemma":[0.9997572,0.00002012488,0.00008969405,0.00008940958,5.830556e-7,0.000043012144],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000067141285,0.00015833862,0.00021517553,0.0000696238,0.00005453666,0.000011567135,0.000058570986,0.00014749536,0.0002657596],"category_scores_gemma":[0.000001677416,0.00015708515,0.00001377152,0.00007000708,0.00023785427,0.0001436724,0.00017033194,0.0001529702,0.000006270527],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011845704,0.00009682016,0.016282698,0.000004477041,0.000002777544,0.0000019581264,0.0006175337,0.000033242075,0.9734696,3.4423388e-7,9.644561e-7,0.009371115],"study_design_scores_gemma":[0.0006576778,0.00002623524,0.2752844,0.000015732438,0.0000034050177,0.000019393283,0.0002109135,0.00009701157,0.72268647,0.000007904652,0.00085856917,0.0001323017],"about_ca_topic_score_codex":0.0005045934,"about_ca_topic_score_gemma":0.0017593487,"teacher_disagreement_score":0.2590017,"about_ca_system_score_codex":0.000093654606,"about_ca_system_score_gemma":0.0000021916267,"threshold_uncertainty_score":0.64057463},"labels":[],"label_agreement":null},{"id":"W2138092433","doi":"10.1128/aem.03391-13","title":"Detection and Prevalence of Verotoxin-Producing Escherichia coli O157 and Non-O157 Serotypes in a Canadian Watershed","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ministry of the Environment, Conservation and Parks; University of Guelph; Public Health Agency of Canada","funders":"Canadian Water Network","keywords":"VTEC; Serotype; Escherichia coli; Watershed; Outbreak; Population; Surface water; Biology; Environmental health; Enterobacteriaceae; Immunomagnetic separation; Public health; Waterborne diseases; Microbiology; Geography; Medicine; Environmental science; Virology; Computer science; Environmental engineering","score_opus":0.003076882972495999,"score_gpt":0.18429748270864035,"score_spread":0.18122059973614435,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138092433","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990348,0.00048160212,0.000020450221,0.000037256934,0.000015767711,0.0002681954,0.000018400257,0.000001942137,0.00012157307],"genre_scores_gemma":[0.9986737,0.0008979502,0.00018973456,0.00010105022,0.000022390816,0.000040201456,0.000021848364,0.00000934754,0.00004382047],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99925107,0.000038149596,0.000113977105,0.00033141294,0.000019147506,0.00024626584],"domain_scores_gemma":[0.9997611,0.0000115791045,0.000032358275,0.00011458887,0.000002571009,0.00007780375],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001683565,0.00011536155,0.00014105551,0.000038470476,0.00006687214,0.000005493682,0.00005084386,0.00010847349,0.0000049102773],"category_scores_gemma":[0.000013084885,0.000108513144,0.000010351353,0.000025834026,0.0002964971,0.0000029428052,0.00014574276,0.00007746241,0.0000011275861],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004412621,0.000013035286,0.060299363,0.00006721156,0.000016757873,3.2432112e-7,0.0001415737,0.0000031093261,0.938238,0.0000046210102,0.0000062239224,0.0011656444],"study_design_scores_gemma":[0.00066288305,0.00028474073,0.38605613,0.000010694418,0.00001155498,0.000010784366,0.00016553546,0.000060923252,0.6104741,0.00002357131,0.0020724707,0.00016659907],"about_ca_topic_score_codex":0.0034902343,"about_ca_topic_score_gemma":0.009435964,"teacher_disagreement_score":0.3277639,"about_ca_system_score_codex":0.000020239122,"about_ca_system_score_gemma":0.000012319154,"threshold_uncertainty_score":0.5276213},"labels":[],"label_agreement":null},{"id":"W2138231948","doi":"10.1128/aem.01255-10","title":"Ecological Basis of the Interaction between <i>Pseudozyma flocculosa</i> and Powdery Mildew Fungi","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Powdery Mildew Fungal Diseases","field":"Agricultural and Biological Sciences","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Powdery mildew; Ecology; Biology; Basis (linear algebra); Ascomycota; Botany; Mathematics; Genetics","score_opus":0.006063805361826904,"score_gpt":0.17145797957920342,"score_spread":0.1653941742173765,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138231948","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99860406,0.0001478295,2.3806032e-7,0.0003321736,0.00009975871,0.00017995863,0.0003356927,0.000013389255,0.0002868755],"genre_scores_gemma":[0.999191,0.000111999085,0.000028264963,0.0004136686,0.000088279805,0.000010826969,0.00012796921,0.0000011758232,0.000026826612],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992844,0.00004279271,0.00016852941,0.00027777374,0.000034317087,0.00019221911],"domain_scores_gemma":[0.9995979,0.00019148459,0.00007636036,0.000061931256,0.0000018213964,0.00007048954],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007303716,0.00013753331,0.00018083675,0.000006679332,0.00014840158,0.000011036851,0.00014409203,0.00015909811,0.00031516023],"category_scores_gemma":[0.000006764341,0.00005100088,0.000055658922,0.000045818317,0.00041585974,0.00003657871,0.0002494908,0.00018519438,0.000014091382],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001245119,0.000057352696,0.12089788,0.0000029485125,0.0000126669165,2.7915888e-7,0.000013380745,1.4662557e-7,0.8641998,0.000060272425,0.00014840589,0.014594387],"study_design_scores_gemma":[0.00014447168,0.00008609433,0.8930375,0.0000036307122,0.000030025194,0.000028220631,0.00020247871,0.00000114654,0.09887647,0.00019559883,0.0072668674,0.00012752187],"about_ca_topic_score_codex":0.000028427672,"about_ca_topic_score_gemma":0.000052759275,"teacher_disagreement_score":0.7721396,"about_ca_system_score_codex":0.000008689586,"about_ca_system_score_gemma":0.0000019549211,"threshold_uncertainty_score":0.34507835},"labels":[],"label_agreement":null},{"id":"W2138327549","doi":"10.1128/aem.03576-13","title":"Alcoholytic Cleavage of Polyhydroxyalkanoate Chains by Class IV Synthases Induced by Endogenous and Exogenous Ethanol","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"biodegradable polymer synthesis and properties","field":"Materials Science","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Japan Society for the Promotion of Science; Chinese Academy of Agricultural Sciences; Public Health Agency of Canada","keywords":"Bacillus megaterium; Polyhydroxyalkanoates; Bacillus cereus; ATP synthase; Biochemistry; Ethanol; Escherichia coli; Biosynthesis; Bacillales; Chemistry; Biology; Enzyme; Bacteria; Stereochemistry; Gene; Bacillus subtilis","score_opus":0.012711215230063192,"score_gpt":0.1679232690918324,"score_spread":0.1552120538617692,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138327549","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98626083,0.012225639,0.00001004558,0.00013475883,0.00006004086,0.0002835849,0.00044404666,0.000024395951,0.0005566776],"genre_scores_gemma":[0.99846035,0.0007818773,0.000056996258,0.0003885428,0.000016383838,0.00005653974,0.00007054598,0.00002432972,0.00014443256],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987698,0.00006405209,0.00028603844,0.00042446813,0.000050476454,0.00040514415],"domain_scores_gemma":[0.9994973,0.00007146563,0.00012375285,0.00020466145,0.0000018205011,0.00010100793],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010180883,0.00024870172,0.00036570392,0.000034313718,0.00016859334,0.000029863084,0.00016091493,0.00019435605,0.00034671646],"category_scores_gemma":[0.0000025774987,0.0001964807,0.000030757088,0.000025558731,0.0006004454,0.00006381239,0.00016865418,0.00009637423,0.00008543001],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024350422,0.00010831579,0.00013195748,0.00002186415,0.000023890954,7.607181e-7,0.00031171847,4.16933e-8,0.99024415,0.000020976553,0.0005229158,0.008589076],"study_design_scores_gemma":[0.00035656634,0.00018187326,0.00009984097,0.00000811291,0.000026426365,0.00006795635,0.00038067604,0.000005724978,0.9975958,0.000023145933,0.0010155536,0.00023833796],"about_ca_topic_score_codex":0.0006494532,"about_ca_topic_score_gemma":0.0000036860142,"teacher_disagreement_score":0.012199542,"about_ca_system_score_codex":0.00002264025,"about_ca_system_score_gemma":0.0000074396344,"threshold_uncertainty_score":0.80122507},"labels":[],"label_agreement":null},{"id":"W2138458451","doi":"10.1128/aem.02039-08","title":"Simultaneous Interferometric Measurement of Corrosive or Demineralizing Bacteria and Their Mineral Interfaces","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Air Force Office of Scientific Research; Office of Naval Research; Multidisciplinary University Research Initiative","keywords":"Microscale chemistry; Interferometry; Corrosion; Materials science; Bacteria; Geology; Optics; Composite material","score_opus":0.007876633966963285,"score_gpt":0.18740077135902025,"score_spread":0.17952413739205697,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138458451","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988824,0.0006984448,0.00006690134,0.000039601524,0.0000666384,0.00012905942,0.00006115472,0.000004550508,0.000051226398],"genre_scores_gemma":[0.998716,0.00039788577,0.00039102975,0.0002481708,0.000051434585,0.000001863501,0.00014148177,0.0000096283775,0.00004249545],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99927807,0.00002312224,0.00019749749,0.00029329365,0.000020359555,0.00018767697],"domain_scores_gemma":[0.99973637,0.000015085235,0.00008382037,0.000110955494,0.000005540377,0.00004821058],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007437571,0.00018065849,0.00021961644,0.000041198462,0.000044071734,0.000013730852,0.00006143555,0.00013855132,0.000014219348],"category_scores_gemma":[0.00001100861,0.00013066256,0.000025727675,0.000030583822,0.00016962523,0.000003603496,0.000102752965,0.000055189008,0.0000010021129],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028306662,0.000045502245,0.00019775773,0.000007479961,0.000029250272,0.0000010659737,0.00007523216,0.0000024150613,0.99045837,0.000007896976,0.000050844297,0.008841145],"study_design_scores_gemma":[0.00056308066,0.00083264033,0.0022197135,0.000013647263,0.000014170545,0.00012031284,0.00027891516,0.000007199971,0.9922287,0.0000053484146,0.0035376325,0.00017864448],"about_ca_topic_score_codex":0.00000582674,"about_ca_topic_score_gemma":0.000007451487,"teacher_disagreement_score":0.0086625,"about_ca_system_score_codex":0.0000134191905,"about_ca_system_score_gemma":0.0000059380022,"threshold_uncertainty_score":0.5328265},"labels":[],"label_agreement":null},{"id":"W2138501357","doi":"10.1128/aem.02507-05","title":"Effect of Drug Transporter Genes on Cysteine Export and Overproduction in <i>Escherichia coli</i>","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biochemical and Molecular Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":70,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science; School of Medicine, Stanford University","keywords":"Cysteine; Escherichia coli; Biochemistry; Biology; Plasmid; Gene; Molecular biology; Reporter gene; Cysteine metabolism; Chemistry; Gene expression; Enzyme","score_opus":0.0015560274639722835,"score_gpt":0.17529425811529253,"score_spread":0.17373823065132024,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138501357","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978931,0.0015599777,0.000011535965,0.000035461104,0.000018081044,0.00020276081,0.000028745888,0.0000024874582,0.00024787968],"genre_scores_gemma":[0.9988039,0.0004535172,0.00003981241,0.00008082791,0.00004374535,0.000022821008,0.00043232334,0.000010797368,0.00011226014],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993311,0.000032148648,0.00013591618,0.00032133507,0.000027172782,0.00015228608],"domain_scores_gemma":[0.9998231,0.000006983806,0.000030144862,0.00011148615,0.0000011213917,0.000027185637],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001037061,0.00012313618,0.0001497395,0.000023176237,0.000020785561,0.0000022598042,0.00004178828,0.00011434477,0.000006922865],"category_scores_gemma":[8.96484e-7,0.000103238184,0.000026491938,0.000022313221,0.0002156216,0.0000011405925,0.00004335933,0.000068613495,0.0000016003697],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028776104,0.000068933754,0.004986664,0.0000318187,0.000010590674,0.0000018997716,0.000007931126,0.000004078385,0.9916952,0.000019101968,0.00007822345,0.0028077685],"study_design_scores_gemma":[0.00087659166,0.0004327153,0.0065554064,0.0000045843735,0.000008431096,0.000014291073,0.0000109103485,0.0000010173358,0.9864088,0.000011182328,0.0055739,0.00010212742],"about_ca_topic_score_codex":0.000031133884,"about_ca_topic_score_gemma":0.0000072046596,"teacher_disagreement_score":0.0054956763,"about_ca_system_score_codex":0.000006450451,"about_ca_system_score_gemma":0.0000032882665,"threshold_uncertainty_score":0.42099312},"labels":[],"label_agreement":null},{"id":"W2138666720","doi":"10.1128/aem.02993-09","title":"Changes in Denitrifier Abundance, Denitrification Gene mRNA Levels, Nitrous Oxide Emissions, and Denitrification in Anoxic Soil Microcosms Amended with Glucose and Plant Residues","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":215,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Nova Scotia Department of Agriculture; Agriculture and Agri-Food Canada; University of Guelph; University of New Brunswick","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Denitrification; Microcosm; Nitrous oxide; Soil carbon; Anoxic waters; Agronomy; Environmental chemistry; Chemistry; Biology; Nitrogen; Soil water; Ecology","score_opus":0.0064206644498232615,"score_gpt":0.1781898998406989,"score_spread":0.17176923539087566,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138666720","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987568,0.0004310264,0.000009546343,0.0001278465,0.000018418903,0.00048528754,0.00008938415,0.000017160115,0.000064511114],"genre_scores_gemma":[0.99460125,0.000774856,0.004033563,0.000102033024,0.00001764899,0.000053595144,0.00029270217,0.000023209472,0.00010111715],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99862844,0.000053449887,0.00024760113,0.0006257946,0.000065893255,0.00037884864],"domain_scores_gemma":[0.9995343,0.000050989256,0.00010322059,0.00019465378,0.0000011116744,0.00011569454],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016123867,0.0002841408,0.00026651242,0.00012318503,0.0001242155,0.000029619277,0.000112160524,0.0002122862,0.00005354257],"category_scores_gemma":[0.000002626338,0.00023493655,0.000013776975,0.00011029766,0.000502833,0.00010036811,0.000121558616,0.0002567063,0.000027288577],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015498126,0.00011383551,0.1658984,0.0000057595566,0.0000108583545,0.00001754216,0.00030461643,0.0000027042586,0.83143926,0.00001193197,0.000017143113,0.0020229595],"study_design_scores_gemma":[0.0015744256,0.0000755463,0.2602401,0.000009129588,0.00002252168,0.00045951144,0.0003522423,0.000015032904,0.7364045,0.00018279627,0.0004015118,0.00026269836],"about_ca_topic_score_codex":0.0003297637,"about_ca_topic_score_gemma":0.0042514834,"teacher_disagreement_score":0.09503479,"about_ca_system_score_codex":0.00008537769,"about_ca_system_score_gemma":0.0000074085824,"threshold_uncertainty_score":0.95804346},"labels":[],"label_agreement":null},{"id":"W2139085726","doi":"10.1128/aem.02006-09","title":"Role of Extracellular Polymeric Substances in the Surface Chemical Reactivity of <i>Hymenobacter aerophilus</i> , a Psychrotolerant Bacterium","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Chromium effects and bioremediation","field":"Environmental Science","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; University of Alberta","keywords":"Titration; Chemistry; Amine gas treating; Adsorption; Extracellular polymeric substance; Reactivity (psychology); Fourier transform infrared spectroscopy; Nuclear chemistry; Infrared spectroscopy; Polysaccharide; Metal; Inorganic chemistry; Organic chemistry; Bacteria; Chemical engineering; Biology; Biofilm","score_opus":0.0025627707047683164,"score_gpt":0.16555944695969935,"score_spread":0.16299667625493103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139085726","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987901,0.00039022815,0.000005580575,0.00009534732,0.000015867588,0.00027326358,0.00002477859,0.0000036435222,0.00040122852],"genre_scores_gemma":[0.9995715,0.000112390204,0.000117935575,0.000117918826,0.000013958812,0.0000052520854,0.00005229902,0.0000046210757,0.000004119941],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99924904,0.000045960292,0.00021899892,0.00024143403,0.00006260215,0.0001819737],"domain_scores_gemma":[0.9996591,0.0000419386,0.00012071583,0.00015350274,3.7094938e-7,0.000024338153],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015097907,0.00013067968,0.00020528736,0.000012425631,0.00002424626,0.0000034158047,0.00013412088,0.00008894377,0.00012030914],"category_scores_gemma":[8.7581475e-7,0.00009111863,0.00003403399,0.00007271675,0.00037144945,0.00004340985,0.00004422996,0.00009601633,0.000008403943],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000069640875,0.00025357,0.009389143,0.0000040593222,0.0000033897102,7.575926e-7,0.00045041347,0.000009299665,0.98432785,0.000018139539,0.00001196147,0.0054617575],"study_design_scores_gemma":[0.00048639934,0.00013025267,0.1430563,0.0000048080306,0.000010034747,0.000018364584,0.00023639448,0.000021474501,0.85516584,0.00010448122,0.00064862706,0.00011703453],"about_ca_topic_score_codex":0.000067685774,"about_ca_topic_score_gemma":0.000009367426,"teacher_disagreement_score":0.13366716,"about_ca_system_score_codex":0.000035668767,"about_ca_system_score_gemma":0.0000020064751,"threshold_uncertainty_score":0.37157097},"labels":[],"label_agreement":null},{"id":"W2139464876","doi":"10.1128/aem.69.8.4482-4488.2003","title":"Production and Properties of Bacteriocin-Like Inhibitory Substances from the Swine Pathogen <i>Streptococcus suis</i> Serotype 2","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Bacteriocin; Microbiology; Streptococcus dysgalactiae; Biology; Streptococcus suis; Pathogen; Serotype; Streptococcaceae; Streptococcus pneumoniae; Bacteria; Streptococcus; Streptococcus agalactiae; Virulence; Antimicrobial; Biochemistry; Antibiotics; Gene","score_opus":0.009276051512704702,"score_gpt":0.1818401861581326,"score_spread":0.1725641346454279,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139464876","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968404,0.0022021367,0.0000016253539,0.00007412734,0.00010189844,0.00054654456,0.000046567737,0.000010521738,0.00017613596],"genre_scores_gemma":[0.9990246,0.0004859851,0.00006350516,0.00011432526,0.000046262223,0.00006542994,0.0000873116,0.000009278718,0.00010324345],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994354,0.000027404327,0.00014684818,0.00024763812,0.000023843599,0.00011886908],"domain_scores_gemma":[0.9997511,0.000016472743,0.000056398996,0.00013817895,0.00000312542,0.000034713143],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000045168475,0.00012350362,0.00017908172,0.000015044478,0.00008988761,0.000004558089,0.000019470399,0.00007057212,0.00006633325],"category_scores_gemma":[0.000004291154,0.000075508484,0.00002441062,0.000030327734,0.00036848473,0.000022521668,0.000026620466,0.00007406814,0.000008162905],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039715473,0.00008435368,0.30443037,0.000008386895,0.000050700346,7.70144e-7,0.00013011742,2.4709084e-7,0.69430417,0.000013911264,0.00003888833,0.0008983816],"study_design_scores_gemma":[0.001105031,0.00022036285,0.3172951,0.0000489794,0.00013201222,0.00008981883,0.0009059955,3.749111e-7,0.6700573,0.000047175334,0.0099637965,0.0001340514],"about_ca_topic_score_codex":0.000036000805,"about_ca_topic_score_gemma":0.00001444084,"teacher_disagreement_score":0.024246862,"about_ca_system_score_codex":0.000021796117,"about_ca_system_score_gemma":0.000008317073,"threshold_uncertainty_score":0.30791464},"labels":[],"label_agreement":null},{"id":"W2139705395","doi":"10.1128/aem.67.1.459-461.2001","title":"Application of Rapid Dot Blot Immunoassay for Detection of <i>Salmonella enterica</i> Serovar Enteritidis in Eggs, Poultry, and Other Foods","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Salmonella enteritidis; Serotype; Immunoassay; Salmonella enterica; Dot blot; Salmonella; Microbiology; Biology; Monoclonal antibody; Inoculation; Bacteria; Western blot; Virology; Antibody; Immunology","score_opus":0.008360742636013533,"score_gpt":0.19752755329239474,"score_spread":0.18916681065638122,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139705395","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998649,0.0005602447,0.000117993266,0.00007293242,0.000027982489,0.00032086173,0.00013803721,0.0000078283265,0.0001051052],"genre_scores_gemma":[0.9985989,0.0008843095,0.00009756725,0.00018855288,0.000031858202,0.000057392397,0.00013057425,0.000002084488,0.000008772565],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99914736,0.00005093039,0.00030379227,0.00028835703,0.000019110377,0.00019044473],"domain_scores_gemma":[0.9996443,0.00012711989,0.00014189984,0.000053625172,0.0000026373707,0.000030419604],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016247669,0.00013014727,0.00028070202,0.000016065123,0.000039476487,0.0000026458563,0.00008175605,0.00014520131,0.000027256743],"category_scores_gemma":[0.0000027931299,0.000068911155,0.00004399685,0.000056386394,0.00021026125,0.000020646423,0.00006109807,0.000053462398,0.0000016763748],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015413729,0.000092665985,0.0997927,0.0000093741555,0.000012730193,1.2599969e-7,0.000036976096,5.502394e-7,0.856081,0.000041591848,0.0000039520874,0.04377417],"study_design_scores_gemma":[0.0014939056,0.0012117625,0.47538492,0.000015944204,0.00003698394,0.00014013797,0.0013374663,0.00003756662,0.48260736,0.00066805084,0.036716465,0.00034943834],"about_ca_topic_score_codex":0.00018168458,"about_ca_topic_score_gemma":0.000035703404,"teacher_disagreement_score":0.37559223,"about_ca_system_score_codex":0.000013254176,"about_ca_system_score_gemma":8.148531e-7,"threshold_uncertainty_score":0.28101155},"labels":[],"label_agreement":null},{"id":"W2139779127","doi":"10.1128/aem.05562-11","title":"Genome and Proteome of Campylobacter jejuni Bacteriophage NCTC 12673","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Institute for Nanotechnology; Public Health Agency of Canada; Institute for Biological Sciences; Alberta Innovates; University of Alberta; University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Directorate for Biological Sciences; Alberta Innovates","keywords":"Campylobacter jejuni; Biology; Bacteriophage; Proteome; Genome; Bacterial genome size; Microbiology; Myoviridae; Genetics; Bacteria; Gene; Escherichia coli","score_opus":0.006327081443547867,"score_gpt":0.1568371895101985,"score_spread":0.15051010806665063,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139779127","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99443763,0.00006188984,0.000025176045,0.000018477598,0.00005576272,0.0002924599,0.000112964386,0.000014553239,0.004981098],"genre_scores_gemma":[0.99798673,0.00016242088,0.0011053252,0.00017551029,0.000016977438,0.00002276951,0.000086244116,0.000018271345,0.00042576427],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990763,0.0000234647,0.00023649978,0.0003708047,0.000024672378,0.00026823004],"domain_scores_gemma":[0.9996104,0.000011513464,0.000104141574,0.0001821775,7.4168736e-7,0.00009097504],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000061007544,0.00019584908,0.00022772579,0.000031134135,0.00009283025,0.000008440992,0.000116884905,0.000121605524,0.006111662],"category_scores_gemma":[9.0608137e-7,0.00017322836,0.000037436886,0.000037675254,0.00071741425,0.00009614852,0.0003690639,0.00012427752,0.00021166206],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003980572,0.00012466981,0.0025847694,0.000008710545,0.000020881562,0.0000031576242,0.0006456327,2.684164e-7,0.9947262,0.000025368916,0.000015711352,0.0018048527],"study_design_scores_gemma":[0.00065073225,0.000255532,0.7779227,0.0000067299543,0.000040731826,0.0002617969,0.00032429985,0.0000011800913,0.19794242,0.000114195616,0.02213067,0.000349002],"about_ca_topic_score_codex":0.00016138339,"about_ca_topic_score_gemma":0.00002097157,"teacher_disagreement_score":0.79678375,"about_ca_system_score_codex":0.000043624816,"about_ca_system_score_gemma":0.0000018351949,"threshold_uncertainty_score":0.9947969},"labels":[],"label_agreement":null},{"id":"W2140096309","doi":"10.1128/aem.00717-14","title":"Metatranscriptome of an Anaerobic Benzene-Degrading, Nitrate-Reducing Enrichment Culture Reveals Involvement of Carboxylation in Benzene Ring Activation","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":117,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Ontario; Ontario Genomics","keywords":"Benzene; Carboxylation; Nitrate; Anaerobic exercise; Chemistry; Environmental chemistry; Enrichment culture; Biodegradation; Ring (chemistry); Biochemistry; Biology; Bacteria; Organic chemistry; Catalysis; Genetics; Physiology","score_opus":0.006327185837774516,"score_gpt":0.19152959845486556,"score_spread":0.18520241261709103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140096309","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990273,0.000043779855,0.00008220114,0.000019740106,0.00004652517,0.00029824532,0.00003007747,0.000009019854,0.00044308702],"genre_scores_gemma":[0.9981165,0.00009180969,0.0013669125,0.00012508965,0.000015692953,0.000007673652,0.00024319804,0.000011252325,0.000021903195],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988129,0.000074787335,0.00043501647,0.0003708094,0.00008168722,0.00022476347],"domain_scores_gemma":[0.99952954,0.000017953796,0.00022981211,0.00015850275,0.0000018487175,0.00006236277],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029590828,0.00018238253,0.00028462237,0.00006934717,0.000048071164,0.000005594637,0.000118644195,0.00013943497,0.00022282147],"category_scores_gemma":[0.0000032652006,0.00016436048,0.000036380494,0.00011755372,0.00016912066,0.00010782814,0.00007055029,0.000101333724,0.00000823965],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030046021,0.00014848943,0.016857753,0.000019280948,0.000013502402,1.743947e-7,0.0009162773,0.0004531738,0.97919726,0.00008022311,0.00001816644,0.0022656727],"study_design_scores_gemma":[0.00081774994,0.00018627406,0.08888306,0.000017890565,0.000019751938,0.0000026324353,0.00037947975,0.00013280743,0.90892094,0.0001327473,0.00032100003,0.00018564455],"about_ca_topic_score_codex":0.00023849578,"about_ca_topic_score_gemma":0.00008345715,"teacher_disagreement_score":0.0720253,"about_ca_system_score_codex":0.00012655726,"about_ca_system_score_gemma":0.0000031674772,"threshold_uncertainty_score":0.6702426},"labels":[],"label_agreement":null},{"id":"W2140345213","doi":"10.1128/aem.00545-10","title":"Coupled Arsenotrophy in a Hot Spring Photosynthetic Biofilm at Mono Lake, California","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Arsenic contamination and mitigation","field":"Environmental Science","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"U.S. Geological Survey; National Aeronautics and Space Administration","keywords":"Arsenite; Anoxygenic photosynthesis; Anoxic waters; Biology; Biofilm; Arsenate; Photosynthesis; Hot spring; RuBisCO; Botany; Environmental chemistry; Chemistry; Bacteria; Arsenic; Phototroph; Ecology","score_opus":0.002837721957274541,"score_gpt":0.16073382060357835,"score_spread":0.1578960986463038,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140345213","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976841,0.000013304758,0.00003556939,0.00006240683,0.000072096176,0.0002376058,0.000046499652,0.000019741148,0.0018286583],"genre_scores_gemma":[0.9988214,0.00004040696,0.00038810517,0.0003103139,0.000014250978,0.00003353684,0.00009200187,0.0000137596235,0.00028623693],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991343,0.000016369553,0.00018756241,0.00036030938,0.000042207022,0.00025925497],"domain_scores_gemma":[0.99968064,0.000029323828,0.0000611412,0.00015426069,3.323626e-7,0.00007431687],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00009634332,0.00015244863,0.00014564651,0.00003363551,0.00010570285,0.0000071305267,0.00009293893,0.00013154808,0.0035941594],"category_scores_gemma":[0.0000032228832,0.0001466815,0.000027438547,0.000046115863,0.0003936218,0.000033326967,0.00023037367,0.00017513741,0.00095111073],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002596462,0.00005316456,0.026863925,0.0000016807714,0.0000031934098,0.0000033619754,0.00013767504,0.000015271175,0.9698538,0.000056305085,0.00003103575,0.002954619],"study_design_scores_gemma":[0.0029008475,0.00010207398,0.54474694,0.000008640008,0.00003154043,0.00017961931,0.00034953526,0.002047421,0.28387237,0.00023242597,0.16466865,0.0008599388],"about_ca_topic_score_codex":0.00010811877,"about_ca_topic_score_gemma":0.0025026351,"teacher_disagreement_score":0.68598145,"about_ca_system_score_codex":0.000094939045,"about_ca_system_score_gemma":0.0000028191407,"threshold_uncertainty_score":0.9998268},"labels":[],"label_agreement":null},{"id":"W2140635150","doi":"10.1128/aem.71.9.5324-5331.2005","title":"A Persistent, Productive, and Seasonally Dynamic Vibriophage Population within Pacific Oysters ( <i>Crassostrea gigas</i> )","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Canadian Food Inspection Agency; University of British Columbia","funders":"U.S. Food and Drug Administration; Natural Sciences and Engineering Research Council of Canada; Canadian Food Inspection Agency","keywords":"Crassostrea; Biology; Population; Ostreidae; Pacific oyster; Ecology; Fishery; Oceanography; Shellfish; Aquatic animal; Oyster; Fish <Actinopterygii>; Geology","score_opus":0.002729132937061473,"score_gpt":0.18342508317106976,"score_spread":0.18069595023400828,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140635150","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979325,0.0011258627,0.000011775059,0.00025800365,0.000036075897,0.00029071837,0.00013875458,0.00001007351,0.00019621845],"genre_scores_gemma":[0.997279,0.0005587319,0.00049528165,0.00016017586,0.00007170144,0.000031904183,0.0009799917,0.000020167503,0.00040306034],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998977,0.000038679857,0.00015215216,0.00052139454,0.000038663984,0.00027208435],"domain_scores_gemma":[0.999687,0.00000695686,0.00006451475,0.00016399982,0.000003248484,0.000074247255],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008777267,0.00019509406,0.00017105081,0.00002946601,0.00013530628,0.00001956958,0.00006992099,0.000120580284,0.0000115055755],"category_scores_gemma":[0.000005237659,0.00018086476,0.000041076688,0.000022370037,0.00032609885,0.000006952673,0.00021962149,0.00008665768,0.000010690355],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009918271,0.000045582074,0.010007455,0.000014150943,0.00008995756,0.0000010391329,0.00012496334,0.000011073973,0.98782086,0.000009133049,0.000107376676,0.0016692447],"study_design_scores_gemma":[0.0069357515,0.0020082432,0.43074661,0.000050360755,0.00025834225,0.0011222336,0.0059559452,0.0002743893,0.505844,0.00009079919,0.04455949,0.0021538099],"about_ca_topic_score_codex":0.000005571709,"about_ca_topic_score_gemma":0.00002820512,"teacher_disagreement_score":0.4819768,"about_ca_system_score_codex":0.000042842774,"about_ca_system_score_gemma":0.0000072099606,"threshold_uncertainty_score":0.7375451},"labels":[],"label_agreement":null},{"id":"W2140648654","doi":"10.1128/aem.02470-13","title":"Differential Induction of Antimicrobial REGIII by the Intestinal Microbiota and Bifidobacterium breve NCC2950","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":102,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; McMaster University; Population Health Research Institute","funders":"","keywords":"Bifidobacterium breve; Biology; Microbiology; Bifidobacterium; Probiotic; Antimicrobial peptides; Gut flora; Antimicrobial; Bacteria; Immunology; Genetics; Lactobacillus","score_opus":0.003030788570955602,"score_gpt":0.16769692591517202,"score_spread":0.16466613734421642,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140648654","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99849606,0.00036168777,0.000079058365,0.00037605976,0.00010629718,0.00035577515,0.00014665003,0.0000058688493,0.000072522875],"genre_scores_gemma":[0.9976038,0.00052293774,0.00018917354,0.0005189876,0.00008985406,0.00001715319,0.0007957788,0.000019588062,0.0002427442],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989926,0.00004719056,0.00025012446,0.00040670237,0.000020181638,0.0002831997],"domain_scores_gemma":[0.99957824,0.000012271618,0.00012860374,0.00021175032,0.000006255597,0.00006290646],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005371796,0.0002139059,0.0002111335,0.00002788937,0.00013366141,0.00001928086,0.00013028867,0.00021966208,0.000091090275],"category_scores_gemma":[0.0000025356608,0.00016231369,0.000039912935,0.000028799397,0.0007058078,0.000005087526,0.00025548786,0.00014809053,0.00001586283],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004260245,0.00007234653,0.0014302107,0.000023376111,0.000034435954,1.3542882e-7,0.000060899176,1.6507994e-7,0.9884481,0.000017010516,0.007683748,0.0021869575],"study_design_scores_gemma":[0.00095081446,0.00022280036,0.029652819,0.000011803813,0.000033270146,0.00043128262,0.00023846343,0.0000012794251,0.95255,0.00001847378,0.015622241,0.00026673425],"about_ca_topic_score_codex":0.000089031666,"about_ca_topic_score_gemma":0.0000067476394,"teacher_disagreement_score":0.035898097,"about_ca_system_score_codex":0.000013022095,"about_ca_system_score_gemma":0.000012403783,"threshold_uncertainty_score":0.661896},"labels":[],"label_agreement":null},{"id":"W2140894913","doi":"10.1128/aem.03254-13","title":"The Legionella pneumophila Collagen-Like Protein Mediates Sedimentation, Autoaggregation, and Pathogen-Phagocyte Interactions","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"The Scarborough Hospital; University of Toronto; Mount Sinai Hospital","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Legionella pneumophila; Microbiology; Legionella; Biofilm; Biology; Pathogen; Virulence; Escherichia coli; Bacteria; Gene; Biochemistry","score_opus":0.004208230797180989,"score_gpt":0.19753651639863,"score_spread":0.19332828560144902,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140894913","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969271,0.0010852879,0.00003789473,0.0010236127,0.000079792415,0.0005531103,0.00003401867,0.000008685817,0.00025049841],"genre_scores_gemma":[0.99630404,0.0011586383,0.00012245405,0.00037583415,0.00010683254,0.0002111619,0.00045760206,0.000016459358,0.0012470033],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99916315,0.000045279063,0.00017137492,0.00032999055,0.000041638206,0.00024859345],"domain_scores_gemma":[0.9996516,0.000029077184,0.000065405366,0.00016310933,0.000008672352,0.000082110244],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009193379,0.00014921476,0.00009878442,0.000024381043,0.00038144647,0.00004703658,0.000100842146,0.00010027537,0.00002553723],"category_scores_gemma":[0.0000049588325,0.000110717694,0.000025004001,0.000032896267,0.0004916394,0.000007512154,0.00017409399,0.00007468884,0.000055697245],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000212082,0.000028171193,0.0006215832,0.000004781571,0.00003548679,7.184989e-7,0.00006977592,0.0000022184151,0.99478644,0.00013849887,0.0015911952,0.0026999065],"study_design_scores_gemma":[0.0014699709,0.00027725808,0.009912824,0.000009721219,0.0000282075,0.00022069158,0.001868584,0.00009701309,0.79544014,0.0007252789,0.189486,0.0004643085],"about_ca_topic_score_codex":0.000024772926,"about_ca_topic_score_gemma":0.000012313229,"teacher_disagreement_score":0.1993463,"about_ca_system_score_codex":0.000017271159,"about_ca_system_score_gemma":0.000015760728,"threshold_uncertainty_score":0.45149365},"labels":[],"label_agreement":null},{"id":"W2140898102","doi":"10.1128/aem.02687-06","title":"Postinoculation Protozoan Establishment and Association Patterns of Methanogenic Archaea in the Ovine Rumen","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":98,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lethbridge College; University of Lethbridge","funders":"Agriculture and Agri-Food Canada; Dairy Farmers of Canada","keywords":"Biology; Archaea; Protozoa; Phylotype; Rumen; Temperature gradient gel electrophoresis; Microbiology; Ribosomal RNA; Methanogen; 16S ribosomal RNA; Bacteria; Genetics; Gene; Food science","score_opus":0.006087822829909523,"score_gpt":0.1820487747162069,"score_spread":0.17596095188629737,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140898102","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989743,0.00008275283,0.000004516363,0.00039105298,0.000011737469,0.00034124832,0.000055381926,0.0000036049228,0.00013539295],"genre_scores_gemma":[0.9993262,0.00010649326,0.000024783454,0.00023670925,0.000024335961,0.000019217081,0.00024883257,4.863629e-7,0.000012911969],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994595,0.000050887906,0.0001490639,0.00015495262,0.000032668115,0.00015289598],"domain_scores_gemma":[0.9996981,0.0001769528,0.000080495534,0.00002285909,0.0000019552813,0.000019623816],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032699626,0.00007175106,0.000108864915,0.000012188899,0.000046605615,0.000004559457,0.000051607793,0.00007430939,0.00004051016],"category_scores_gemma":[0.0000045306397,0.000029175137,0.000016316648,0.000040268336,0.00006435185,0.000021272273,0.000047949976,0.00006176474,0.0000019009206],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028086597,0.00006742448,0.16800405,0.0000031144466,0.000003677331,4.291874e-7,0.000100335106,1.7980032e-7,0.8221831,0.00017413075,0.000005614539,0.0094298795],"study_design_scores_gemma":[0.00023678008,0.00016781385,0.96561337,0.0000029611406,0.0000048702805,0.000009854626,0.00068130816,0.0000010671542,0.031542502,0.0003234717,0.0013556548,0.000060330774],"about_ca_topic_score_codex":0.00007987044,"about_ca_topic_score_gemma":0.00009775925,"teacher_disagreement_score":0.7976093,"about_ca_system_score_codex":0.000023679937,"about_ca_system_score_gemma":6.990038e-7,"threshold_uncertainty_score":0.118972756},"labels":[],"label_agreement":null},{"id":"W2140953593","doi":"10.1128/aem.02896-05","title":"Comparison of Mechanisms of Alkane Metabolism under Sulfate-Reducing Conditions among Two Bacterial Isolates and a Bacterial Consortium","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":119,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Guardian Chemicals (Canada)","funders":"U.S. Department of Education","keywords":"Carboxylation; Hexadecane; Alkane; Chemistry; Sulfate; Fumaric acid; Biochemistry; Metabolism; Formic acid; Organic chemistry; Hydrocarbon; Catalysis","score_opus":0.005540212326284965,"score_gpt":0.20638307127782854,"score_spread":0.20084285895154358,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140953593","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984768,0.0001298501,0.00014244184,0.000018495582,0.00015451535,0.00025046765,0.0001904024,0.000010338509,0.0006267063],"genre_scores_gemma":[0.99870574,0.00004435792,0.00066674786,0.000018761206,0.000034433335,0.00001178189,0.0004407649,0.000016380625,0.000061044506],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99883044,0.00005723275,0.00045738017,0.00035297568,0.000040082923,0.00026191663],"domain_scores_gemma":[0.9994867,0.0000554358,0.0002541035,0.00013827566,0.0000011977535,0.00006432143],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00011130868,0.00020662247,0.0004489223,0.000039506962,0.000101318525,0.000009387735,0.000089082954,0.00015245391,0.0020118458],"category_scores_gemma":[0.000001061001,0.00018016149,0.000042544132,0.000050321854,0.0010940367,0.000059037196,0.00020605706,0.0001153391,0.000017850829],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006962994,0.0001498224,0.00377173,0.000008281992,0.000042560958,3.482692e-7,0.00015841716,0.0006746716,0.99358016,0.001359178,0.000044968223,0.00014023898],"study_design_scores_gemma":[0.002130782,0.00014543252,0.065347366,0.000011333267,0.00014851072,0.00003095014,0.0005136413,0.00016038884,0.92692363,0.003703075,0.0005547397,0.00033014163],"about_ca_topic_score_codex":0.00057322596,"about_ca_topic_score_gemma":0.000034940484,"teacher_disagreement_score":0.066656515,"about_ca_system_score_codex":0.00002478204,"about_ca_system_score_gemma":0.0000033330305,"threshold_uncertainty_score":0.9989005},"labels":[],"label_agreement":null},{"id":"W2141106933","doi":"10.1128/aem.01697-07","title":"An Inducible Propane Monooxygenase Is Responsible for <i>N</i> -Nitrosodimethylamine Degradation by <i>Rhodococcus</i> sp. Strain RHA1","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":119,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Environmental Health Sciences","keywords":"N-Nitrosodimethylamine; Strain (injury); Degradation (telecommunications); Propane; Monooxygenase; Chemistry; Rhodococcus; Biodegradation; Microbiology; Environmental chemistry; Biochemistry; Biology; Organic chemistry; Enzyme; Computer science","score_opus":0.007902588906684216,"score_gpt":0.21362212590761204,"score_spread":0.20571953700092782,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141106933","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968588,0.00014672715,0.00081363064,0.000117302916,0.000049420403,0.000832044,0.000742173,0.000040487612,0.0003994313],"genre_scores_gemma":[0.9810009,0.000050198036,0.014888711,0.0008350859,0.000045071945,0.00006480314,0.0022425738,0.000038431397,0.00083421374],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99827826,0.000042382853,0.00031390367,0.0007065127,0.00007900137,0.0005799567],"domain_scores_gemma":[0.99935865,0.000062011095,0.00010564461,0.00028864233,0.0000013340974,0.00018368596],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00043956318,0.00031106983,0.00025410455,0.000048647,0.00023351666,0.000025500127,0.0001814237,0.0002005508,0.0004297591],"category_scores_gemma":[0.000002028867,0.00027337353,0.00005674468,0.00008911085,0.00037314935,0.00014743189,0.00011217967,0.000117652264,0.00014061092],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026510694,0.00029504797,0.0030035882,0.000005164255,0.00002522875,0.000003990478,0.000194978,0.000004420466,0.98631483,0.000029703051,0.0018933362,0.007964598],"study_design_scores_gemma":[0.0013819316,0.00045502515,0.0020971843,0.000001941297,0.000040366205,0.00004716899,0.0003455343,0.00001842938,0.9734915,0.00035772784,0.021434642,0.0003285327],"about_ca_topic_score_codex":0.00008441295,"about_ca_topic_score_gemma":0.000029334971,"teacher_disagreement_score":0.019541306,"about_ca_system_score_codex":0.00013154239,"about_ca_system_score_gemma":0.0000069528096,"threshold_uncertainty_score":0.99997187},"labels":[],"label_agreement":null},{"id":"W2141126994","doi":"10.1128/aem.00354-07","title":"Distribution and Characteristics of <i>Listeria monocytogenes</i> Isolates from Surface Waters of the South Nation River Watershed, Ontario, Canada","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":161,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; Environment and Climate Change Canada; Health Canada; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Health Canada","keywords":"Listeria monocytogenes; Virulence; Biology; Serotype; Veterinary medicine; Listeria; Microbiology; Outbreak; Pathogen; Watershed; Bacteria; Virology; Gene; Genetics","score_opus":0.010591908487680672,"score_gpt":0.18511158776276215,"score_spread":0.17451967927508147,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141126994","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99820393,0.000088672816,0.00015414074,0.00001915001,0.00013935538,0.00014062309,0.0012325699,0.0000014650769,0.000020070516],"genre_scores_gemma":[0.99735194,0.000042981694,0.00013030031,0.00010693906,0.000024392628,0.0000016225229,0.002299973,0.000009442173,0.000032412438],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99930775,0.000021438236,0.00024823702,0.00023894571,0.000029537721,0.0001540669],"domain_scores_gemma":[0.99962354,0.000010418437,0.00014803367,0.00017974358,0.0000050769513,0.00003317564],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007669793,0.00013502462,0.00016579684,0.000005586632,0.00005360814,0.0000032158944,0.000101406695,0.00013204131,0.000009276662],"category_scores_gemma":[0.0000017252133,0.000105837215,0.000026198255,0.000013648377,0.00032430416,0.0000024510555,0.0002730907,0.000046826677,2.976009e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017177098,0.00001444979,0.09742294,0.000007863182,0.00004405072,2.6834084e-7,0.000246076,0.0000053062613,0.90181935,0.0000061085357,0.000025024818,0.00023676401],"study_design_scores_gemma":[0.0003792686,0.00004387094,0.19781911,0.0000031665807,0.000026510083,0.000008232164,0.00016666183,0.0000010969229,0.79720837,0.000010340099,0.004228551,0.00010481317],"about_ca_topic_score_codex":0.054892648,"about_ca_topic_score_gemma":0.035306122,"teacher_disagreement_score":0.104610994,"about_ca_system_score_codex":0.000065569504,"about_ca_system_score_gemma":0.000029057514,"threshold_uncertainty_score":0.982297},"labels":[],"label_agreement":null},{"id":"W2141162978","doi":"10.1128/aem.68.10.4827-4834.2002","title":"Characterization and Implications of the Cell Surface Reactivity of <i>Calothrix</i> sp. Strain KC97","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":133,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Titration; Chemistry; Dissociation constant; Surface charge; Transmission electron microscopy; Electrophoresis; Dissociation (chemistry); Reactivity (psychology); Crystallography; Analytical Chemistry (journal); Inorganic chemistry; Biochemistry; Chromatography; Materials science; Organic chemistry; Nanotechnology","score_opus":0.006061485198316636,"score_gpt":0.16241103562686607,"score_spread":0.15634955042854942,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141162978","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978325,0.00004120215,0.00003615566,0.00017069853,0.000022184571,0.00018013237,0.00028565683,0.0000042266006,0.001427296],"genre_scores_gemma":[0.99918437,0.00025032758,0.00009602768,0.00023201869,0.0000041447443,0.000003470684,0.0001105534,0.0000059523954,0.0001131294],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994298,0.00008211537,0.00016184538,0.0001777971,0.000015937778,0.00013246323],"domain_scores_gemma":[0.9995631,0.00006107437,0.00013580619,0.00021419948,6.5645116e-7,0.000025168243],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007563035,0.000099212746,0.00016136495,0.000008037242,0.00012033995,0.000001566185,0.00013690373,0.00011437528,0.0009686261],"category_scores_gemma":[0.0000014824584,0.0000806768,0.000024311912,0.000045407243,0.00095785706,0.000031707998,0.0002950509,0.000122698,0.000018603369],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000007164333,0.00013239338,0.025330082,0.0000062288564,0.0000051203065,3.519783e-8,0.0002596573,0.000012681446,0.9727224,0.00009390166,0.000092393755,0.0013379371],"study_design_scores_gemma":[0.00038842068,0.00008174843,0.58295214,0.000002642732,0.000019790146,0.000019692981,0.00009815304,0.000013559052,0.40903282,0.00028037737,0.0069776415,0.00013297968],"about_ca_topic_score_codex":0.000037225756,"about_ca_topic_score_gemma":0.000041325595,"teacher_disagreement_score":0.5636896,"about_ca_system_score_codex":0.000017527022,"about_ca_system_score_gemma":0.0000012686874,"threshold_uncertainty_score":0.9999446},"labels":[],"label_agreement":null},{"id":"W2141215716","doi":"10.1128/aem.03768-12","title":"Assessing the Inactivation of Mycobacterium avium subsp. <i>paratuberculosis</i> during Composting of Livestock Carcasses","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Agriculture Food and Rural Development; Agriculture and Agri-Food Canada; University of Manitoba","funders":"","keywords":"Paratuberculosis; Mycobacterium smegmatis; Mycobacterium; Microbiology; Biology; Mycobacterium avium subsp. paratuberculosis; Compost; Inoculation; Veterinary medicine; Bacteria; Food science; Medicine; Tuberculosis; Mycobacterium tuberculosis; Immunology; Ecology","score_opus":0.009468221363662875,"score_gpt":0.23579131710393764,"score_spread":0.22632309574027476,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141215716","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984793,0.00021094571,0.000008074802,0.00021625278,0.000028454704,0.00041028336,0.000022999384,0.000008222655,0.0006154799],"genre_scores_gemma":[0.99917716,0.0002068502,0.00023396799,0.00013403466,0.00004142004,0.0000440925,0.00013355339,0.000012181048,0.000016712955],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99922574,0.00004369819,0.0002604991,0.0001931524,0.000056464287,0.0002204573],"domain_scores_gemma":[0.99940705,0.00021807966,0.00013419735,0.00016694037,0.000010458639,0.00006326478],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008208463,0.0001257125,0.00027386652,0.00004910848,0.00008359045,0.000014822479,0.00006494916,0.00008674669,0.00014787604],"category_scores_gemma":[0.000016768267,0.00008838715,0.00004325522,0.000057060355,0.00033348412,0.00009572508,0.00012202795,0.00014267473,0.000011879421],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026981406,0.00009706695,0.13579956,0.000110696834,0.000037844293,8.145827e-7,0.00013498968,0.0000012045084,0.86326885,0.000017261691,0.000069706846,0.00043502476],"study_design_scores_gemma":[0.00037124535,0.00008257991,0.50135356,0.000028529465,0.000027403688,0.000050395844,0.00062748004,0.000004393814,0.4973002,0.000010956223,0.000090271795,0.00005296794],"about_ca_topic_score_codex":0.0001322789,"about_ca_topic_score_gemma":0.0000011759969,"teacher_disagreement_score":0.36596864,"about_ca_system_score_codex":0.000038152906,"about_ca_system_score_gemma":0.000014107562,"threshold_uncertainty_score":0.36043233},"labels":[],"label_agreement":null},{"id":"W2141403175","doi":"10.1128/aem.68.12.5933-5942.2002","title":"Gene Cloning and Characterization of Multiple Alkane Hydroxylase Systems in<i>Rhodococcus</i>Strains Q15 and NRRL B-16531","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":237,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Monooxygenase; Biology; AlkB; Alkane; Gene; Pseudomonas putida; Rhodococcus; Escherichia coli; Gene cluster; Heterologous expression; Genetics; Pseudomonas; Biochemistry; Bacteria; Enzyme; Cytochrome P450; Recombinant DNA","score_opus":0.006937680980837268,"score_gpt":0.15998749613603902,"score_spread":0.15304981515520175,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141403175","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99904287,0.00019125563,0.000010872985,0.000043570442,0.000047593905,0.000289256,0.00018231927,0.0000097091115,0.00018252716],"genre_scores_gemma":[0.99839264,0.0010577017,0.00011976864,0.0001490161,0.000015763486,0.000006910811,0.00018262486,0.00001046128,0.00006511646],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990928,0.000036099274,0.0002660843,0.0003470143,0.000039106286,0.00021885968],"domain_scores_gemma":[0.99969244,0.000023879666,0.00011121899,0.00009578427,5.62063e-7,0.000076086166],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000103803315,0.00016107586,0.00021699048,0.000037216687,0.00006186447,0.00001183183,0.000058279667,0.00012999553,0.00026201515],"category_scores_gemma":[0.00000276847,0.00014909248,0.0000137136185,0.000051683255,0.00040980187,0.00006394718,0.00014832322,0.00008274698,0.000037477148],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010383823,0.00007268986,0.04955245,0.000011655415,0.0000059886124,0.0000021069052,0.0003586808,0.000008103008,0.9477975,0.0000054063084,0.000020458505,0.0021546038],"study_design_scores_gemma":[0.002793597,0.00019874003,0.3939924,0.000024948567,0.000027657416,0.00017470394,0.00039490144,0.0013487965,0.5942082,0.000012403993,0.0062594865,0.0005641518],"about_ca_topic_score_codex":0.00006591857,"about_ca_topic_score_gemma":0.000022634598,"teacher_disagreement_score":0.35358927,"about_ca_system_score_codex":0.0000391537,"about_ca_system_score_gemma":9.2937006e-7,"threshold_uncertainty_score":0.6079815},"labels":[],"label_agreement":null},{"id":"W2141581835","doi":"10.1128/aem.00598-08","title":"Production of an Insecticidal Crystal Protein from <i>Bacillus thuringiensis</i> by the Methylotroph <i>Methylobacterium extorquens</i>","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Transgenic Plants and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute; Canadian Forest Service","funders":"","keywords":"Methylotroph; Bacillus thuringiensis; Methylobacterium; Biology; Bacillaceae; Bacterial protein; Microbiology; Bacillus (shape); Bacteria; Genetics; 16S ribosomal RNA; Bacillus subtilis","score_opus":0.0053116551010682815,"score_gpt":0.17094936886036294,"score_spread":0.16563771375929465,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141581835","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982651,0.00044729235,0.00017303538,0.00006964461,0.00005039711,0.0003196776,0.00056865864,0.000008875029,0.000097332995],"genre_scores_gemma":[0.9976689,0.00023637345,0.00045380602,0.00017679234,0.000097884345,0.000057816636,0.0011609287,0.000015879248,0.00013157156],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991743,0.000045412966,0.00017937302,0.00038902965,0.000035518835,0.00017636716],"domain_scores_gemma":[0.9995862,0.0000076025476,0.000078651865,0.00027761006,0.0000034983286,0.000046417237],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005771492,0.00015281307,0.00014632002,0.000011209433,0.00014485352,0.0000042157644,0.00013143239,0.00013126474,0.000015101663],"category_scores_gemma":[0.0000022633872,0.000116325566,0.00003775349,0.000026303895,0.0004915408,0.0000042618267,0.00007038425,0.00009150964,0.0000037238592],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007609235,0.00010076618,0.0001830326,0.0000027312246,0.000039844374,5.286902e-7,0.00008079561,0.0000058759238,0.99828106,0.000010912183,0.00024654518,0.0009717935],"study_design_scores_gemma":[0.0003580654,0.00012905974,0.003299201,0.0000013754781,0.000018525567,0.0001089199,0.00009488378,8.007721e-7,0.9668099,0.000027652259,0.029010976,0.00014060555],"about_ca_topic_score_codex":0.00008108656,"about_ca_topic_score_gemma":0.000014238767,"teacher_disagreement_score":0.031471148,"about_ca_system_score_codex":0.0000089006735,"about_ca_system_score_gemma":0.000011190293,"threshold_uncertainty_score":0.47436187},"labels":[],"label_agreement":null},{"id":"W2141865731","doi":"10.1128/aem.02945-14","title":"The Role of Host Phylogeny Varies in Shaping Microbial Diversity in the Hindguts of Lower Termites","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect and Arachnid Ecology and Behavior","field":"Biochemistry, Genetics and Molecular Biology","cited_by":91,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria; University of British Columbia; Canadian Institute for Advanced Research","funders":"","keywords":"Biology; Phylogenetics; Ecology; Microbial ecology; Host (biology); Phylogenetic diversity; Bacteroidetes; Evolutionary biology; Zoology; Bacteria; 16S ribosomal RNA; Gene; Genetics","score_opus":0.004056015751775502,"score_gpt":0.1705421467109113,"score_spread":0.1664861309591358,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141865731","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993366,0.00029196023,0.000003080062,0.000024550782,0.000034219644,0.0001094412,0.000022074672,7.490638e-7,0.00017732255],"genre_scores_gemma":[0.9996261,0.00011474728,0.000018738581,0.00014387757,0.000021534448,0.000006539424,0.000052181793,0.0000033115289,0.000012985374],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99950874,0.000052373653,0.00013628189,0.0001426037,0.00001452445,0.00014549174],"domain_scores_gemma":[0.9997875,0.00003356256,0.000057407728,0.000111788344,0.0000013437019,0.000008394431],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017710896,0.000081868704,0.00011360962,0.000017467068,0.00011220189,0.0000025308227,0.00015570516,0.00012342918,0.000008064103],"category_scores_gemma":[0.0000031679704,0.00005410283,0.000029943341,0.000019501284,0.00044667476,0.0000016095934,0.0002238567,0.000077569566,0.0000013776587],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008579088,0.00008627868,0.104705535,0.0000028559682,0.000006908264,4.3463996e-7,0.00021199441,0.0000017034976,0.89357895,0.00014830897,0.000009910637,0.0011613545],"study_design_scores_gemma":[0.0005947197,0.00022620347,0.2721146,0.0000037029033,0.000012627539,0.00001874708,0.000659351,0.0000025816148,0.7235054,0.00019849245,0.0025562076,0.000107396074],"about_ca_topic_score_codex":0.000024818855,"about_ca_topic_score_gemma":0.000119333185,"teacher_disagreement_score":0.17007355,"about_ca_system_score_codex":0.000004429096,"about_ca_system_score_gemma":0.0000037695165,"threshold_uncertainty_score":0.22062494},"labels":[],"label_agreement":null},{"id":"W2141960023","doi":"10.1128/aem.02017-09","title":"<i>CLM1</i>of<i>Fusarium graminearum</i>Encodes a Longiborneol Synthase Required for Culmorin Production","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycotoxins in Agriculture and Food","field":"Agricultural and Biological Sciences","cited_by":87,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Trichothecene; Polyketide synthase; Biology; Zearalenone; Fusarium; Butenolide; Mycotoxin; Gene; Biosynthesis; Saccharomyces cerevisiae; Structural gene; Secondary metabolism; Yeast; Biochemistry; Genetics; Mutant; Botany","score_opus":0.007336914233655602,"score_gpt":0.17748582163558385,"score_spread":0.17014890740192826,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141960023","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99792,0.00027759772,0.000017754774,0.0005422017,0.000099399665,0.0005185924,0.00025918576,0.00003064748,0.00033466186],"genre_scores_gemma":[0.99752384,0.00015815983,0.0003348688,0.00026512507,0.0002088258,0.000039585764,0.0013397546,0.0000011906868,0.00012863167],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99903977,0.000019694764,0.00022338623,0.000392406,0.00003723305,0.0002875313],"domain_scores_gemma":[0.9997583,0.00004315656,0.00007376002,0.00006530313,0.000004949547,0.000054536355],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011291512,0.00017339704,0.00023360329,0.000010096612,0.0001368488,0.000010143634,0.00012210853,0.0001465554,0.000032205488],"category_scores_gemma":[0.000005743372,0.00006538586,0.00006994112,0.00005617133,0.00015105125,0.000041594274,0.000043978045,0.000072947594,0.000013185138],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007388781,0.00018988398,0.00019956012,0.000006492446,0.0000129408545,5.9526946e-7,0.000068979294,0.000002143955,0.9713165,0.0003174226,0.0001768475,0.027634703],"study_design_scores_gemma":[0.0002589514,0.00063209,0.006052646,0.000004376303,0.000029461724,0.000056028966,0.0002755399,0.0000025866375,0.9743947,0.00086223823,0.017213633,0.00021775621],"about_ca_topic_score_codex":0.000008624611,"about_ca_topic_score_gemma":0.000006018827,"teacher_disagreement_score":0.027416946,"about_ca_system_score_codex":0.000016055972,"about_ca_system_score_gemma":0.0000012666244,"threshold_uncertainty_score":0.2666358},"labels":[],"label_agreement":null},{"id":"W2141992584","doi":"10.1128/aem.66.7.2804-2810.2000","title":"Biocontrol of the Sugarcane Borer <i>Eldana saccharina</i> by Expression of the <i>Bacillus thuringiensis cry1Ac7</i> and <i>Serratia marcescens chiA</i> Genes in Sugarcane-Associated Bacteria","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect Resistance and Genetics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Petroleum Technology Alliance Canada","keywords":"Pseudomonas fluorescens; Bacillus thuringiensis; Biology; Serratia marcescens; Microbiology; Plasmid; Chitinase; Saccharina; Bacteria; Gene; Botany; Escherichia coli; Genetics","score_opus":0.0012959863485112245,"score_gpt":0.14105977233168354,"score_spread":0.13976378598317232,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141992584","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969559,0.0021299408,0.0000012104468,0.000088470224,0.000042215182,0.00028207828,0.00032140693,0.000002125197,0.0001766569],"genre_scores_gemma":[0.99720645,0.001956776,0.00002853907,0.00040196787,0.000018250887,0.000014369432,0.00012600003,0.000014917836,0.00023275049],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990476,0.00007364701,0.00026898133,0.0003131983,0.000047804508,0.00024877506],"domain_scores_gemma":[0.9995322,0.000012362499,0.0001268879,0.00029210266,0.000004035431,0.000032364707],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008190682,0.00018636326,0.00023246346,0.000014187675,0.00007919008,0.000005360762,0.0001971362,0.00020032043,0.000043326214],"category_scores_gemma":[0.0000028526065,0.00012387629,0.000060530798,0.000048107246,0.0004991242,0.000002459964,0.00018773373,0.00009901688,6.8577435e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010714211,0.0000770462,0.026737068,0.0000146978,0.000023237633,2.505675e-7,0.00010109064,0.000008835538,0.971444,0.0000027833678,0.00035448803,0.0011293428],"study_design_scores_gemma":[0.00090325205,0.00008282783,0.06295545,0.000017394916,0.000021685208,0.000011435203,0.00009067854,0.0000018087945,0.9279276,0.000017139917,0.007828448,0.00014229082],"about_ca_topic_score_codex":0.000079183636,"about_ca_topic_score_gemma":0.0002280513,"teacher_disagreement_score":0.043516424,"about_ca_system_score_codex":0.0000127001285,"about_ca_system_score_gemma":0.000015792568,"threshold_uncertainty_score":0.5051529},"labels":[],"label_agreement":null},{"id":"W2142114377","doi":"10.1128/aem.02422-14","title":"The Western Progression of Lyme Disease: Infectious and Nonclonal <i>Borrelia burgdorferi Sensu Lato</i> Populations in Grand Forks County, North Dakota","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Oklahoma State University","keywords":"Sensu; Borrelia burgdorferi; Lyme disease; Biology; Borrelia; Virology; Zoology; Genetics; Antibody","score_opus":0.005165833028998988,"score_gpt":0.205240515279006,"score_spread":0.20007468225000702,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142114377","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99599385,0.0029227114,0.00003878448,0.00007717293,0.0001943238,0.00037984052,0.00025973134,0.00002815128,0.000105455234],"genre_scores_gemma":[0.9984492,0.00052655593,0.000009179529,0.00016646156,0.00002411368,0.00005712666,0.0006836494,0.000019109959,0.00006457707],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988642,0.000115521136,0.0003130798,0.00036073755,0.000021787728,0.00032472864],"domain_scores_gemma":[0.9994343,0.00015325146,0.00014101683,0.00021819405,0.000004917417,0.000048353817],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012016022,0.00022458627,0.0002857453,0.000057328136,0.00028945936,0.000013541644,0.00009711563,0.00018000447,0.00002273506],"category_scores_gemma":[0.000010655493,0.00016958435,0.000044406173,0.000056295165,0.0008825403,0.00003808082,0.00018781837,0.00019755804,0.000022098639],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017632787,0.00017411796,0.82437676,0.000018182045,0.000052513813,0.0000015040029,0.00007756692,0.000021618942,0.17049485,0.00035009318,0.00020400234,0.0040524835],"study_design_scores_gemma":[0.002217135,0.00019041241,0.97454304,0.000023195113,0.000080198566,0.00012841262,0.000045916757,0.000012388447,0.0018545662,0.00030190728,0.020341197,0.00026162143],"about_ca_topic_score_codex":0.00007864372,"about_ca_topic_score_gemma":0.0004178233,"teacher_disagreement_score":0.16864029,"about_ca_system_score_codex":0.00003380135,"about_ca_system_score_gemma":0.000013925457,"threshold_uncertainty_score":0.69154495},"labels":[],"label_agreement":null},{"id":"W2142176767","doi":"10.1128/aem.72.4.2765-2774.2006","title":"Quantitative PCR Targeting 16S rRNA and Reductive Dehalogenase Genes Simultaneously Monitors Multiple<i>Dehalococcoides</i>Strains","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":474,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Toronto; U.S. Department of Energy; Environmental Security Technology Certification Program; National Science Foundation","keywords":"Dehalococcoides; Biology; Dehalogenase; 16S ribosomal RNA; Gene; Microbiology; Ribosomal RNA; Computational biology; Genetics; Chemistry","score_opus":0.005327945064705403,"score_gpt":0.18234042343692794,"score_spread":0.17701247837222253,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142176767","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980551,0.00040703084,0.00005109074,0.00009608739,0.000101501704,0.00039441598,0.00030636907,0.000039054135,0.0005493362],"genre_scores_gemma":[0.99641377,0.00029692097,0.002436631,0.00021814124,0.00006500186,0.000011931044,0.00040209197,0.000025162943,0.00013037965],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984325,0.000060606806,0.00033488852,0.0006579079,0.00006992714,0.00044415923],"domain_scores_gemma":[0.9995029,0.000098807766,0.00014887199,0.0001300094,0.000002084035,0.00011732858],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001370422,0.00031911704,0.00026265683,0.00003836811,0.00027244785,0.000026689053,0.0001218068,0.00019604094,0.0003564331],"category_scores_gemma":[0.000010304521,0.00028558576,0.00004410588,0.00007591682,0.0010754077,0.00007971639,0.00022497623,0.00015912708,0.0002102057],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048520447,0.00010651854,0.028412385,0.0000048454685,0.000016813248,0.000012156766,0.0002479927,0.0001675948,0.9681674,0.000043294203,0.00048356087,0.0022889173],"study_design_scores_gemma":[0.002776357,0.00039394284,0.09158764,0.000012912927,0.00008061848,0.00024893327,0.0039280653,0.00043561036,0.8790371,0.000375508,0.019747574,0.0013757636],"about_ca_topic_score_codex":0.0003085818,"about_ca_topic_score_gemma":0.00011724905,"teacher_disagreement_score":0.08913033,"about_ca_system_score_codex":0.000119852135,"about_ca_system_score_gemma":0.0000047597955,"threshold_uncertainty_score":0.99995965},"labels":[],"label_agreement":null},{"id":"W2142319736","doi":"10.1128/aem.04265-14","title":"Solution Structure of Acidocin B, a Circular Bacteriocin Produced by Lactobacillus acidophilus M46","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Bacteriocin; Chemistry; Lactobacillus acidophilus; Lactobacillus gasseri; Peptide sequence; Mass spectrometry; Peptide; Crystallography; Stereochemistry; Lactobacillus; Biochemistry; Chromatography; Biology; Bacteria; Organic chemistry","score_opus":0.0075094383421115485,"score_gpt":0.158915403647109,"score_spread":0.15140596530499745,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142319736","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99843264,0.00040156275,0.0000042451575,0.0002241648,0.00006517445,0.00020368493,0.0005728217,0.000015152046,0.00008058646],"genre_scores_gemma":[0.9987424,0.000059968566,0.000052214873,0.00016535424,0.000047896592,0.0000036524407,0.0009038321,0.0000015517398,0.000023154094],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992003,0.000030367675,0.0001772411,0.00031106715,0.000044628567,0.0002363895],"domain_scores_gemma":[0.99974424,0.000011817259,0.000088436704,0.00006005147,0.000003978243,0.0000914515],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000067174464,0.00015369941,0.00020265642,0.000008081884,0.000067896144,0.000009647156,0.00011857984,0.0001726004,0.00009199055],"category_scores_gemma":[0.0000028688974,0.00007111996,0.00003368049,0.00005483506,0.0001945274,0.000031664276,0.00012263026,0.00010124319,0.000010946524],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035738274,0.00006280786,0.0012404001,0.000004336428,0.00001911574,5.012429e-7,0.00007070983,7.864135e-7,0.99284,0.00003794681,0.0001968003,0.0054908697],"study_design_scores_gemma":[0.0007515187,0.0005085158,0.012346506,0.000006307672,0.00002887541,0.000050427043,0.00046361177,0.000008451715,0.9686367,0.00032115384,0.016545204,0.00033274866],"about_ca_topic_score_codex":0.000029006518,"about_ca_topic_score_gemma":0.000007547615,"teacher_disagreement_score":0.024203308,"about_ca_system_score_codex":0.00003944776,"about_ca_system_score_gemma":0.0000037885093,"threshold_uncertainty_score":0.2900188},"labels":[],"label_agreement":null},{"id":"W2142367844","doi":"10.1128/aem.01967-13","title":"Insights into the Mode of Action of Benzyl Isothiocyanate on Campylobacter jejuni","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Canadian Institutes of Health Research; Région Bretagne","keywords":"Benzyl isothiocyanate; Campylobacter jejuni; Antimicrobial; Isothiocyanate; Biochemistry; Microbiology; Detoxification (alternative medicine); Chemistry; Biology; Bacteria; Medicine","score_opus":0.008715429259062619,"score_gpt":0.18781459955844032,"score_spread":0.1790991702993777,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142367844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99873954,0.00012895888,0.0000017344934,0.0003302895,0.000054468066,0.00019674141,0.000017856775,0.0000073970004,0.0005230166],"genre_scores_gemma":[0.9988814,0.00031958186,0.000018238641,0.00055906345,0.00004236511,0.000020607504,0.000116637544,0.000001135678,0.000040991137],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99929255,0.00006734115,0.0002310347,0.00022424187,0.000029260396,0.00015555289],"domain_scores_gemma":[0.99957854,0.00017518099,0.00013286987,0.00007393731,0.000003609605,0.000035846017],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000040014475,0.00012795933,0.00022203231,0.000010481427,0.00007791492,0.0000036735235,0.00014370459,0.00014371856,0.00029812593],"category_scores_gemma":[0.00000288201,0.00004379127,0.000050618775,0.00004550633,0.0003410104,0.000028190268,0.000084643994,0.00009786699,0.000045577402],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024185978,0.00007098418,0.0030460767,0.0000032639089,0.000018362567,1.1987623e-7,0.0001763785,0.0000066659627,0.98050123,0.0006028433,0.0001265273,0.015423384],"study_design_scores_gemma":[0.0004121082,0.00079809455,0.3403967,0.000011668113,0.000031904307,0.00001746028,0.0022122264,0.000037691883,0.63319904,0.0064290483,0.016150637,0.00030345278],"about_ca_topic_score_codex":0.0006260869,"about_ca_topic_score_gemma":0.00010518633,"teacher_disagreement_score":0.3473022,"about_ca_system_score_codex":0.000014474765,"about_ca_system_score_gemma":0.0000012699503,"threshold_uncertainty_score":0.32642698},"labels":[],"label_agreement":null},{"id":"W2142528850","doi":"10.1128/aem.01333-13","title":"Impact of Land Use on Arbuscular Mycorrhizal Fungal Communities in Rural Canada","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dalhousie University; Agriculture and Agri-Food Canada","funders":"","keywords":"Arbuscular mycorrhizal fungi; Land use; Agroforestry; Biology; Mycorrhizal fungi; Arbuscular mycorrhizal; Ecology; Geography; Symbiosis; Bacteria","score_opus":0.004926740449092762,"score_gpt":0.15707946131919737,"score_spread":0.15215272087010462,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142528850","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99768716,0.00007420932,1.0600267e-7,0.000031634157,0.000039028786,0.00014228643,0.00172157,0.00000449514,0.0002994882],"genre_scores_gemma":[0.99727863,0.00030727903,0.0000080004,0.00014627987,0.000019597534,0.000011791098,0.002191757,8.369136e-7,0.00003582792],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995278,0.00003805462,0.00013469254,0.000091921625,0.000025346822,0.00018218081],"domain_scores_gemma":[0.9992942,0.0005785731,0.00003932087,0.00004129905,0.0000017516903,0.00004480808],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000026785392,0.00011108106,0.00015119492,0.000010758579,0.00005625493,0.000011332059,0.0000770868,0.000063658896,0.003252431],"category_scores_gemma":[0.000003238156,0.000046279747,0.000035206773,0.00003156402,0.000023985236,0.00003982929,0.00004495592,0.0001174942,0.000049725153],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026713898,0.000042281365,0.6039287,9.947322e-7,0.000010365514,0.0000010229252,0.000026044694,0.000023446808,0.394319,0.000028373108,0.0006923586,0.00090070977],"study_design_scores_gemma":[0.00009768641,0.00020715517,0.99517024,0.000012801437,0.000004707658,0.000050854436,0.0006638136,0.00003233061,0.0013496717,0.000056626704,0.002213758,0.000140336],"about_ca_topic_score_codex":0.69898105,"about_ca_topic_score_gemma":0.1306322,"teacher_disagreement_score":0.5683488,"about_ca_system_score_codex":0.00004385314,"about_ca_system_score_gemma":0.0000049026658,"threshold_uncertainty_score":0.9976587},"labels":[],"label_agreement":null},{"id":"W2142774973","doi":"10.1128/aem.02514-07","title":"Genomic Differences between <i>Fibrobacter succinogenes</i> S85 and <i>Fibrobacter intestinalis</i> DR7, Identified by Suppression Subtractive Hybridization","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Applications in Construction Materials","field":"Environmental Science","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Cooperative State Research, Education, and Extension Service","keywords":"Fibrobacter succinogenes; Biology; Suppression subtractive hybridization; Gene; Genetics; Molecular biology; Biochemistry; Complementary DNA; Rumen","score_opus":0.005101979005893771,"score_gpt":0.1872354738984298,"score_spread":0.18213349489253602,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142774973","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99675554,0.00006788913,0.0016669484,0.000068190224,0.00011588543,0.00044487364,0.00033184513,0.000043810778,0.0005050025],"genre_scores_gemma":[0.9972661,0.00013938436,0.0013087213,0.0002606852,0.00007393222,0.000023540582,0.0007495096,0.000029069477,0.00014906943],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982714,0.00005892069,0.00045413827,0.00073134433,0.0000700294,0.00041415571],"domain_scores_gemma":[0.999262,0.00013370253,0.00022185933,0.00023960807,0.0000023074506,0.00014054666],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00025903713,0.00031294528,0.00030985905,0.00004839983,0.00027402755,0.00005982585,0.00019195286,0.00019647274,0.0009924822],"category_scores_gemma":[0.0000043135633,0.0002918101,0.00003296828,0.00007500939,0.0008705287,0.00015264815,0.00045456988,0.00015357153,0.00021032554],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034662644,0.00003468516,0.17811805,0.000006872426,0.000015043229,7.005084e-7,0.00009105651,0.0000011657121,0.8174839,0.00002833604,0.0008647639,0.0033207585],"study_design_scores_gemma":[0.00054527645,0.00004667819,0.3533448,0.000009251568,0.00004663189,0.00014621805,0.0001489038,0.0000014770875,0.62790215,0.00030742196,0.017100777,0.00040038518],"about_ca_topic_score_codex":0.00008841358,"about_ca_topic_score_gemma":0.000013846871,"teacher_disagreement_score":0.18958172,"about_ca_system_score_codex":0.000101640544,"about_ca_system_score_gemma":0.000003713335,"threshold_uncertainty_score":0.9999534},"labels":[],"label_agreement":null},{"id":"W2142796911","doi":"10.1128/aem.02332-06","title":"Oil Field Souring Control by Nitrate-Reducing <i>Sulfurospirillum</i> spp. That Outcompete Sulfate-Reducing Bacteria for Organic Electron Donors","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mine drainage and remediation techniques","field":"Environmental Science","cited_by":316,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Alberta; ConocoPhillips","keywords":"Nitrate; Desulfovibrio; Sulfate; Nitrite; Sulfate-reducing bacteria; Chemistry; Bioreactor; Sulfide; Bacteria; Environmental chemistry; Microbiology; Nitrification; Sulfur; Food science; Biology; Nitrogen; Organic chemistry","score_opus":0.0034659176451745793,"score_gpt":0.18485589681666484,"score_spread":0.18138997917149025,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142796911","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99362344,0.00014380513,0.0040776543,0.00017337945,0.000121280005,0.00025798072,0.00006413629,0.00007405268,0.0014642826],"genre_scores_gemma":[0.9964404,0.00018428858,0.00087897544,0.0012801125,0.00008932246,0.000041607906,0.00023963283,0.000038771468,0.00080688443],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99833214,0.000025759731,0.00034544882,0.0005833414,0.000062825304,0.00065050885],"domain_scores_gemma":[0.9993695,0.0001411412,0.00015944966,0.00020610982,0.0000012693806,0.00012253101],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000360965,0.0002984323,0.0003071859,0.0000406294,0.000250505,0.000027100812,0.00018898668,0.00022994637,0.00080989936],"category_scores_gemma":[0.000007650076,0.0002743798,0.000074048956,0.00005413578,0.00022192871,0.00009373305,0.00013295659,0.00019502822,0.00007954336],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000074190524,0.0000547072,0.0018099726,0.000012690528,0.00002202933,0.00000168958,0.00016442421,0.000009747301,0.9914638,0.000014898435,0.001622167,0.0047496813],"study_design_scores_gemma":[0.00097528193,0.00016074795,0.00069430616,0.0000063007687,0.000031522628,0.000031631633,0.0001745229,0.000015117441,0.98139256,0.00006256682,0.016107086,0.00034837707],"about_ca_topic_score_codex":0.00012486486,"about_ca_topic_score_gemma":0.000037998216,"teacher_disagreement_score":0.01448492,"about_ca_system_score_codex":0.00015462855,"about_ca_system_score_gemma":0.0000047524177,"threshold_uncertainty_score":0.99997085},"labels":[],"label_agreement":null},{"id":"W2142948075","doi":"10.1128/aem.01956-14","title":"Chemolithotrophic Primary Production in a Subglacial Ecosystem","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"University of Calgary; Biogeoscience Institute, University of Calgary; National Aeronautics and Space Administration","keywords":"Pyrite; Geology; Environmental chemistry; Geochemistry; Chemistry","score_opus":0.0028728936573633756,"score_gpt":0.16058983921359887,"score_spread":0.1577169455562355,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142948075","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9926298,0.000028108829,0.000016116304,0.00016290438,0.00007220214,0.00024005202,0.000008245322,0.000015649426,0.0068268967],"genre_scores_gemma":[0.99915564,0.00005661194,0.00016564717,0.0002971944,0.000054174565,0.00004064576,0.00007210809,0.000011275499,0.00014668293],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989004,0.00007195243,0.00016467202,0.00041607508,0.000042591804,0.0004043144],"domain_scores_gemma":[0.99970955,0.000021889064,0.000038816037,0.00014972265,2.438463e-7,0.00007978504],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027739655,0.00012890915,0.00018340562,0.000038885068,0.00008296162,0.0000064729115,0.00011194794,0.00011699901,0.00037814322],"category_scores_gemma":[0.000007295199,0.000119790544,0.000020536823,0.000055518154,0.00027790427,0.000050845792,0.00023766165,0.00015617067,0.00066909],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004119669,0.00008042356,0.077103466,0.00000859867,0.000003879361,0.0000022094407,0.000074966876,0.000025499807,0.9156012,0.000063617554,0.0002534913,0.006741479],"study_design_scores_gemma":[0.0020029952,0.0003358418,0.8872124,0.0000086349455,0.000012847959,0.00038815817,0.0001940879,0.00009635069,0.037364278,0.0020854992,0.06967901,0.00061990827],"about_ca_topic_score_codex":0.000039286046,"about_ca_topic_score_gemma":0.00027306715,"teacher_disagreement_score":0.8782369,"about_ca_system_score_codex":0.00024268025,"about_ca_system_score_gemma":0.00000316794,"threshold_uncertainty_score":0.86000216},"labels":[],"label_agreement":null},{"id":"W2143223453","doi":"10.1128/aem.02112-05","title":"Direct Quantitation and Detection of Salmonellae in Biological Samples without Enrichment, Using Two-Step Filtration and Real-Time PCR","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":141,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Public Safety Research and Treatment","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Filtration (mathematics); Chromatography; Salmonella; Detection limit; Sample preparation; Filter (signal processing); Biology; Real-time polymerase chain reaction; Extraction (chemistry); DNA extraction; Microbiology; Chemistry; Bacteria; Polymerase chain reaction; Mathematics; Gene; Biochemistry","score_opus":0.016716323917878754,"score_gpt":0.2086093077558644,"score_spread":0.19189298383798564,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143223453","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99921143,0.00031611221,0.000019374387,0.000020490674,0.00001883316,0.00018552032,0.00005300323,0.0000134051825,0.00016183525],"genre_scores_gemma":[0.9987753,0.00056596746,0.00032059464,0.000034001867,0.000039558756,0.000008396792,0.00024933455,0.0000012722294,0.0000055691776],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991183,0.000108394226,0.00024967256,0.00032602675,0.000019608662,0.00017798488],"domain_scores_gemma":[0.99962676,0.0002007092,0.000112644404,0.000029551253,0.000002009876,0.000028357192],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017350078,0.00013436418,0.00025663152,0.000019943785,0.000075456104,0.000007755845,0.000034131976,0.0001436474,0.000021452679],"category_scores_gemma":[0.0000047955505,0.00006702928,0.00001949088,0.000052447245,0.00025376212,0.000034561017,0.00005027111,0.00005042635,0.0000037881632],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004598879,0.000031798205,0.2219241,0.0000025161737,0.00000426738,3.2116824e-7,0.000017921384,0.00000518474,0.7741109,0.00005632801,0.0000019860302,0.0037987004],"study_design_scores_gemma":[0.00048338878,0.00021692477,0.9321414,0.0000057527322,0.000014284727,0.0000464248,0.00025063954,0.00014683364,0.06590163,0.0004007328,0.00022472716,0.00016723188],"about_ca_topic_score_codex":0.0011847892,"about_ca_topic_score_gemma":0.00031744762,"teacher_disagreement_score":0.71021736,"about_ca_system_score_codex":0.000018737825,"about_ca_system_score_gemma":0.0000010081793,"threshold_uncertainty_score":0.27333745},"labels":[],"label_agreement":null},{"id":"W2143303915","doi":"10.1128/aem.69.9.5543-5554.2003","title":"Scanning Transmission X-Ray, Laser Scanning, and Transmission Electron Microscopy Mapping of the Exopolymeric Matrix of Microbial Biofilms","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":360,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Brockhouse Institute for Materials Research","funders":"","keywords":"Biofilm; Microscopy; Macromolecule; Correlative; Transmission electron microscopy; Chemical imaging; Confocal; Nucleic acid; Materials science; Chemistry; Biophysics; Nanotechnology; Biology; Bacteria; Optics; Biochemistry; Remote sensing; Physics","score_opus":0.0034774540027090284,"score_gpt":0.19558116552007385,"score_spread":0.19210371151736483,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143303915","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968397,0.002533338,0.00016905605,0.000038666665,0.00006445663,0.00019976546,0.000038054623,0.0000037800405,0.00011317648],"genre_scores_gemma":[0.9968513,0.00070158555,0.0021121518,0.00009378291,0.000024430998,0.0000026980092,0.00008663387,0.000021412907,0.00010595366],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989888,0.000066448054,0.00028517877,0.00035348732,0.000031654803,0.00027441897],"domain_scores_gemma":[0.9996216,0.000008963278,0.00014662676,0.00016298411,0.0000034602442,0.00005632805],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010622582,0.00020625621,0.00025098264,0.000037392598,0.00012630392,0.0000068666436,0.00008961874,0.0002290016,0.000023170523],"category_scores_gemma":[0.0000018104251,0.00015953777,0.00007390528,0.00005635228,0.00044604586,0.0000036762206,0.00006375815,0.00010084912,5.853188e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009686715,0.000047222802,0.0010212928,0.000037348178,0.000032101936,2.7541648e-7,0.0001292861,0.0000060623,0.9956899,0.000018451925,0.00004889173,0.0028722896],"study_design_scores_gemma":[0.00073980365,0.00015160898,0.0014754456,0.000035413606,0.000028266286,0.00006135165,0.00016105472,0.000002371684,0.97963065,0.00000637491,0.017533142,0.00017452016],"about_ca_topic_score_codex":0.000018779236,"about_ca_topic_score_gemma":8.040867e-7,"teacher_disagreement_score":0.01748425,"about_ca_system_score_codex":0.000009260374,"about_ca_system_score_gemma":0.000021163529,"threshold_uncertainty_score":0.6505761},"labels":[],"label_agreement":null},{"id":"W2143378214","doi":"10.1128/aem.70.7.3807-3813.2004","title":"Thioesterase II of <i>Escherichia coli</i> Plays an Important Role in 3-Hydroxydecanoic Acid Production","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Science Fund for Distinguished Young Scholars; Public Health Agency of Canada","keywords":"Thioesterase; Escherichia coli; Coenzyme A; Biochemistry; Biology; Recombinant DNA; Intracellular; Acyl carrier protein; Cofactor; Enterobacteriaceae; Chemistry; Gene; Biosynthesis; Enzyme; Reductase","score_opus":0.002273926945155803,"score_gpt":0.1652670640701241,"score_spread":0.1629931371249683,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143378214","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99893516,0.0006341201,0.000024399016,0.000032067222,0.000102951635,0.00018457536,0.000039494364,0.000007993641,0.0000392654],"genre_scores_gemma":[0.9984007,0.00044077227,0.00048446795,0.00009522509,0.00012349681,0.000016086296,0.00038781148,0.000015298709,0.000036127763],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991765,0.00001497405,0.00022577083,0.000379832,0.00002171063,0.00018122578],"domain_scores_gemma":[0.9996896,5.5533184e-7,0.00007128533,0.00019445806,0.0000023404925,0.000041809933],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001051201,0.00014787307,0.00016220157,0.00003779836,0.00004712,0.0000029904538,0.000069746035,0.00014772193,0.000004262761],"category_scores_gemma":[0.0000032446999,0.00014109194,0.000025363888,0.00004556832,0.00012833062,0.0000048368506,0.00007146509,0.00008506699,0.0000018432744],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006498164,0.00019250049,0.0006792423,0.000010123562,0.000013891157,5.6737167e-7,0.00014238429,0.00030202107,0.9982474,0.000048534395,0.000007798012,0.00029057436],"study_design_scores_gemma":[0.00056612055,0.00024013236,0.002376532,0.0000053999224,0.000010180377,0.000049374394,0.00013440236,0.0000014184834,0.99426246,0.000037643138,0.002160958,0.00015540165],"about_ca_topic_score_codex":0.000028978135,"about_ca_topic_score_gemma":0.000029222614,"teacher_disagreement_score":0.0039849444,"about_ca_system_score_codex":0.000017932607,"about_ca_system_score_gemma":0.000013380542,"threshold_uncertainty_score":0.5753562},"labels":[],"label_agreement":null},{"id":"W2143424620","doi":"10.1128/aem.02337-10","title":"Rapid Concentration and Molecular Enrichment Approach for Sensitive Detection of Escherichia coli and Shigella Species in Potable Water Samples","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fecal contamination and water quality","field":"Environmental Science","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Shigella; Escherichia coli; Biology; Microbiology; Agar; Detection limit; Polymerase chain reaction; Escherichia; Real-time polymerase chain reaction; Molecular biology; Bacteria; Chemistry; Gene; Chromatography; Genetics","score_opus":0.014184325144643866,"score_gpt":0.17642430465225103,"score_spread":0.16223997950760716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143424620","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99599814,0.00006386571,0.0026331781,0.000014343143,0.000012300091,0.00036137927,0.000023390265,0.0000042231327,0.0008891819],"genre_scores_gemma":[0.9981237,0.00008554236,0.0015148139,0.00013773782,0.000003583781,0.000024882931,0.00007903566,0.0000053310487,0.000025371492],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99938303,0.000042689888,0.00014860806,0.00024966427,0.0000241526,0.00015182557],"domain_scores_gemma":[0.99985856,0.000017321445,0.0000378728,0.000052150153,7.7854065e-7,0.000033338867],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001465919,0.00010034866,0.00013855156,0.000011340816,0.00004810578,0.000005120123,0.000024681383,0.00007088556,0.000055104534],"category_scores_gemma":[0.0000012040979,0.00008079297,0.000012216821,0.000016730635,0.000358016,0.000038485552,0.00008165174,0.00004229094,0.0000019852353],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007770387,0.000059427643,0.0056686252,0.000011534613,0.000007739347,2.985537e-7,0.0014790621,0.000003895599,0.9905974,0.00021538902,0.0000023172495,0.0018765518],"study_design_scores_gemma":[0.00060756167,0.00013820692,0.082290426,0.0000013078657,0.000010515653,0.000004637677,0.0009892288,0.0001066693,0.9151205,0.00017723851,0.00044448164,0.00010925567],"about_ca_topic_score_codex":0.000097349905,"about_ca_topic_score_gemma":0.000011803039,"teacher_disagreement_score":0.0766218,"about_ca_system_score_codex":0.000031864955,"about_ca_system_score_gemma":7.3668673e-7,"threshold_uncertainty_score":0.32946414},"labels":[],"label_agreement":null},{"id":"W2143446377","doi":"10.1128/aem.00297-09","title":"Adherence of <i>Escherichia coli</i> O157:H7 Mutants In Vitro and in Ligated Pig Intestines","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; University of Guelph; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Canadian Institutes of Health Research; China Scholarship Council","keywords":"Complementation; Escherichia coli; In vitro; Mutant; Virulence; Microbiology; In vivo; Biology; Enterobacteriaceae; Gene; Pathogen; Ileum; Bacteria; Molecular biology; Biochemistry; Genetics","score_opus":0.00551229051978491,"score_gpt":0.21118227979083504,"score_spread":0.20566998927105012,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143446377","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99805576,0.0013495459,0.0000054287007,0.00006539676,0.00001210293,0.00020914512,0.000030888485,0.0000032570717,0.00026845472],"genre_scores_gemma":[0.99806535,0.0011528011,0.00036599798,0.00027288558,0.0000140257425,0.000019784557,0.00007376904,0.0000072430435,0.000028142043],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991894,0.000036710546,0.00019781344,0.00031164914,0.00002434946,0.0002401265],"domain_scores_gemma":[0.9997808,0.000019301515,0.00004923881,0.000108053035,0.000002732025,0.0000399122],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009669413,0.00014344828,0.00021926805,0.000038676786,0.000024033232,0.0000037363343,0.000085493535,0.00011998807,0.000004384007],"category_scores_gemma":[0.000015598995,0.00013480567,0.000015321362,0.000068375804,0.0003165596,0.0000024927233,0.00015567057,0.00011390978,0.0000014506219],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023868581,0.000106219566,0.011673719,0.000010673961,0.000010240154,0.0000033113959,0.00006623566,0.0000030247816,0.98566884,0.000007645412,0.00002202197,0.0021893983],"study_design_scores_gemma":[0.001083155,0.00032655874,0.0928268,0.000013487204,0.000004414733,0.000014098482,0.00022854781,0.000016678716,0.9046032,0.00007254754,0.0006433908,0.00016713045],"about_ca_topic_score_codex":0.000020527781,"about_ca_topic_score_gemma":0.000034215325,"teacher_disagreement_score":0.08115308,"about_ca_system_score_codex":0.000012685387,"about_ca_system_score_gemma":0.0000113919905,"threshold_uncertainty_score":0.54972154},"labels":[],"label_agreement":null},{"id":"W2143494600","doi":"10.1128/aem.72.1.760-768.2006","title":"Involvement of Quinolinate Phosphoribosyl Transferase in Promotion of Potato Growth by a <i>Burkholderia</i> Strain","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Complementation; Operon; Mutant; Quinolinate; Microbiology; Burkholderia; Gene cluster; Gene; Biochemistry; Bacteria; Genetics; Amino acid; Tryptophan","score_opus":0.005553426799297112,"score_gpt":0.1605991724197504,"score_spread":0.1550457456204533,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143494600","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979743,0.00017792842,0.0000039741317,0.00008432808,0.00002153999,0.00017764504,0.0014383836,0.000005042584,0.0001168621],"genre_scores_gemma":[0.9980403,0.00019006926,0.000025619078,0.000042498225,0.000008956751,0.000011462613,0.001662399,8.963117e-7,0.00001778509],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993631,0.000029794515,0.00026165217,0.00016885149,0.000023878123,0.00015270253],"domain_scores_gemma":[0.99984926,0.000027463699,0.000072074814,0.000029821698,0.0000025281774,0.000018876155],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007572968,0.00010641617,0.00017890405,0.000012681353,0.00003624492,0.000003661961,0.00007629819,0.00008046893,0.00011116163],"category_scores_gemma":[5.538618e-7,0.000053809308,0.000032762684,0.000055321463,0.00013848109,0.000032445896,0.000032155298,0.000078221135,0.000002045547],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037253125,0.0004899578,0.0037463673,0.000009251924,0.0000069080993,5.4265e-7,0.000046196,0.0000011480606,0.99245894,0.00010940856,0.00010725204,0.0029868046],"study_design_scores_gemma":[0.00040320322,0.00025188216,0.04721744,0.000012399838,0.0000068293166,0.00001128169,0.0003547779,0.0000020950167,0.9501754,0.0002393304,0.0012161823,0.00010920156],"about_ca_topic_score_codex":0.0014288566,"about_ca_topic_score_gemma":0.000332773,"teacher_disagreement_score":0.043471076,"about_ca_system_score_codex":0.000020416415,"about_ca_system_score_gemma":0.000001627788,"threshold_uncertainty_score":0.21942799},"labels":[],"label_agreement":null},{"id":"W2143579328","doi":"10.1128/aem.67.4.1788-1792.2001","title":"Tests of a Cellular Model for Constant Branch Distribution in the Filamentous Fungus <i>Neurospora crassa</i>","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fungal Biology and Applications","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Neurospora crassa; Crassa; Hypha; Mycelium; Biology; Growth rate; Mutant; Tip growth; Filamentous fungus; Branching (polymer chemistry); Biophysics; Botany; Chemistry; Biochemistry; Geometry; Mathematics; Gene","score_opus":0.009142136750835356,"score_gpt":0.20962848420224792,"score_spread":0.20048634745141256,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143579328","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99591625,0.00029917504,0.0021564965,0.00027309815,0.000012930977,0.00060851255,0.00050039886,0.0000065402337,0.00022662862],"genre_scores_gemma":[0.99729574,0.00018603144,0.000108227134,0.0007269,0.000015507814,0.00009546909,0.0015114921,0.0000055662417,0.00005507358],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994401,0.000012957321,0.00017380378,0.00019444223,0.000018479861,0.0001602614],"domain_scores_gemma":[0.99972326,0.000066172455,0.000052129973,0.00013257233,0.0000019396705,0.00002392456],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009198693,0.000094782234,0.00016877532,0.000014704907,0.000054319047,0.0000017426876,0.000054435808,0.00010589551,0.000013134497],"category_scores_gemma":[0.0000032001076,0.000067823275,0.000032420736,0.00003993144,0.00029060533,0.000007690001,0.000023903269,0.00009500385,0.000004792635],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013833158,0.00021522841,0.0076915273,0.000012559156,0.000009277786,0.000002170346,0.000091415706,0.000016291366,0.9893797,0.0015912245,0.00028542738,0.00056685373],"study_design_scores_gemma":[0.023097904,0.0035912716,0.22080743,0.00010917439,0.00070207525,0.002187677,0.0027420227,0.0069303466,0.6561546,0.014499752,0.067717165,0.0014606006],"about_ca_topic_score_codex":0.0000040754035,"about_ca_topic_score_gemma":0.0000037947289,"teacher_disagreement_score":0.33322513,"about_ca_system_score_codex":0.000019856252,"about_ca_system_score_gemma":0.000007974635,"threshold_uncertainty_score":0.2765753},"labels":[],"label_agreement":null},{"id":"W2143919761","doi":"10.1128/aem.02916-13","title":"Phylogenetic Differences in Attached and Free-Living Bacterial Communities in a Temperate Coastal Lagoon during Summer, Revealed via High-Throughput 16S rRNA Gene Sequencing","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":109,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université du Québec à Rimouski; Université Laval","funders":"","keywords":"Ecology; Biology; Phylogenetic diversity; Biodiversity; Beta diversity; Phylum; Community structure; Temperate climate; Microbial population biology; Species richness; Phylogenetic tree; Bacteria","score_opus":0.009273472330587144,"score_gpt":0.17701352082857708,"score_spread":0.16774004849798993,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143919761","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99932474,0.000065825625,0.000018526298,0.00004499089,0.000075509015,0.00025134723,0.00005663715,0.000014565034,0.00014786971],"genre_scores_gemma":[0.99884427,0.0002526084,0.00034129605,0.00022631847,0.00003173376,0.000026929032,0.00022713198,0.000019342451,0.00003038643],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9981809,0.0005245718,0.00036209074,0.00039774302,0.000037441372,0.00049720425],"domain_scores_gemma":[0.9992696,0.00023046324,0.000106818894,0.00032687528,7.563257e-7,0.000065453096],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003385162,0.00029350765,0.00047330855,0.00006936974,0.00027959797,0.000016656004,0.00030296954,0.00025784152,0.0009787056],"category_scores_gemma":[0.000007992832,0.0002913248,0.000024577941,0.00007164107,0.0010878234,0.000072710005,0.0011830184,0.00039888764,0.000030067888],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000062591185,0.000064323176,0.26172808,0.0000131477245,0.000009731405,0.000002016076,0.0010735947,0.00005217506,0.7367117,0.000017922051,0.000007792238,0.00025695152],"study_design_scores_gemma":[0.0019616417,0.00020203812,0.96921015,0.000027620876,0.000014922919,0.000095541305,0.0011146882,0.00009724534,0.026020346,0.00064615434,0.00015406209,0.00045556866],"about_ca_topic_score_codex":0.0020608997,"about_ca_topic_score_gemma":0.012899495,"teacher_disagreement_score":0.71069133,"about_ca_system_score_codex":0.00012905679,"about_ca_system_score_gemma":0.0000052419487,"threshold_uncertainty_score":0.99995387},"labels":[],"label_agreement":null},{"id":"W2144079627","doi":"10.1128/aem.68.7.3293-3299.2002","title":"Potential Repair of <i>Escherichia coli</i> DNA following Exposure to UV Radiation from Both Medium- and Low-Pressure UV Sources Used in Drinking Water Treatment","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biosensors and Analytical Detection","field":"Engineering","cited_by":216,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Photolyase; Irradiation; Escherichia coli; Microorganism; DNA repair; Incubation; Chemistry; High pressure; Microbiology; Bacteria; Biology; DNA; Biochemistry","score_opus":0.003177630725671278,"score_gpt":0.1496040852182888,"score_spread":0.1464264544926175,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144079627","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99896187,0.000627051,0.000057992867,0.000031898646,0.00007462566,0.00014639721,0.000028427958,0.000035469697,0.000036282247],"genre_scores_gemma":[0.9994066,0.00025764678,0.00012042913,0.000065600885,0.000045148565,0.000010848372,0.00005386295,0.000015684847,0.000024176146],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993788,0.00001677558,0.00017815271,0.00021635898,0.000028406921,0.0001815043],"domain_scores_gemma":[0.99983776,0.000015496904,0.000016576585,0.00008063605,4.1371328e-7,0.000049099144],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000032514952,0.0001431116,0.00021770695,0.000041209292,0.000038935108,0.0000084269095,0.000031247455,0.0001359603,0.000054547076],"category_scores_gemma":[5.036583e-7,0.00011600241,0.000046032535,0.000026386115,0.000045025055,0.000033598535,0.000030572253,0.00006489131,0.000007977743],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011971262,0.000037252674,0.005310674,0.0000090921685,0.00007499231,0.0000033033555,0.0005850047,0.00096407614,0.99156123,0.0000021341086,0.00000981441,0.001430449],"study_design_scores_gemma":[0.0016771104,0.00022038634,0.028586864,0.000020518433,0.000117486976,0.000004885087,0.00043958725,0.0035013398,0.962267,0.000029336219,0.0028340446,0.0003014598],"about_ca_topic_score_codex":0.000036588688,"about_ca_topic_score_gemma":0.000013904606,"teacher_disagreement_score":0.029294256,"about_ca_system_score_codex":0.00003122617,"about_ca_system_score_gemma":5.5241776e-7,"threshold_uncertainty_score":0.4730441},"labels":[],"label_agreement":null},{"id":"W2144178003","doi":"10.1128/aem.69.12.7523-7526.2003","title":"Avian Reservoirs and Zoonotic Potential of theEmerging Human Pathogen <i>Helicobactercanadensis</i>","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Veterinary medicine and infectious diseases","field":"Veterinary","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Biology; Branta; Human pathogen; 16S ribosomal RNA; Zoology; Pathogen; Outbreak; Waterfowl; Phylogenetic tree; Microbiology; Ecology; Goose; Bacteria; Gene; Virology; Genetics","score_opus":0.013038277633188964,"score_gpt":0.22472408352426065,"score_spread":0.2116858058910717,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144178003","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971767,0.0004492073,0.000010972411,0.000027409098,0.000057334313,0.00015164968,0.000098070064,0.000015468864,0.0020131867],"genre_scores_gemma":[0.99926347,0.00017552242,0.000057743913,0.0002561196,0.00003115649,0.000010872922,0.00014128527,0.00001806737,0.000045743986],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99917895,0.00006555427,0.00020999835,0.0002857962,0.000030006644,0.00022970172],"domain_scores_gemma":[0.9996655,0.00001872989,0.00006868664,0.00016074843,0.0000017806351,0.000084568885],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008172347,0.00016105441,0.00022770316,0.000051878065,0.00013455412,0.000005751398,0.00005551536,0.000086459266,0.0003113782],"category_scores_gemma":[0.0000028346494,0.00014695802,0.00003631668,0.000026299054,0.0003228896,0.000034364035,0.00008758316,0.00009045777,0.000012419992],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046649347,0.00007385994,0.007715484,0.000031469914,0.00003845743,0.00003699205,0.00013271916,0.0000012552949,0.99117243,0.0002632522,0.00008660361,0.0004008471],"study_design_scores_gemma":[0.017519418,0.014605783,0.6560745,0.00026134503,0.001428062,0.024084827,0.020484153,0.000043880387,0.13482875,0.005034065,0.121598944,0.004036261],"about_ca_topic_score_codex":0.000053434003,"about_ca_topic_score_gemma":0.0000052650994,"teacher_disagreement_score":0.8563436,"about_ca_system_score_codex":0.000019243711,"about_ca_system_score_gemma":0.0000054993807,"threshold_uncertainty_score":0.5992774},"labels":[],"label_agreement":null},{"id":"W2144255735","doi":"10.1128/aem.03360-14","title":"Reassessment of the Transhydrogenase/Malate Shunt Pathway in Clostridium thermocellum ATCC 27405 through Kinetic Characterization of Malic Enzyme and Malate Dehydrogenase","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Genome Canada","keywords":"Malate dehydrogenase; Biochemistry; Malic enzyme; Biology; Citric acid cycle; Malic acid; Enzyme; Chemistry; Dehydrogenase","score_opus":0.005503336185736298,"score_gpt":0.1705381257418249,"score_spread":0.1650347895560886,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144255735","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99869984,0.0007234127,0.00007689398,0.000048859005,0.0000808544,0.00024022053,0.00009917342,0.0000033033502,0.000027466665],"genre_scores_gemma":[0.99880546,0.00071198464,0.00007603987,0.00005258578,0.00004306067,0.000011365504,0.00024723183,0.000014371061,0.00003788269],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992385,0.000043216973,0.00024341122,0.00027269678,0.00003106683,0.00017111452],"domain_scores_gemma":[0.9996726,0.0000020989219,0.00010128375,0.00018171886,0.0000039403776,0.000038357044],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011330552,0.0001461108,0.00018559648,0.00001888964,0.000020299301,0.0000027591782,0.00007588608,0.00013731916,0.0000062688737],"category_scores_gemma":[0.0000025396578,0.00011350544,0.000034145614,0.000047653575,0.00019674966,0.0000035899418,0.000080612044,0.000066774155,7.747517e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005756585,0.0000725278,0.0010199676,0.000026431755,0.0000231484,4.1668255e-7,0.00014358996,0.00003715456,0.9975924,0.00004605389,0.00000403141,0.0009767084],"study_design_scores_gemma":[0.000626893,0.00010537687,0.007966714,0.000010722299,0.00001615301,0.00004523715,0.00006583735,0.0000076161045,0.98795253,0.00002038366,0.0030655512,0.000117000476],"about_ca_topic_score_codex":0.000023089437,"about_ca_topic_score_gemma":0.0000039606043,"teacher_disagreement_score":0.009639889,"about_ca_system_score_codex":0.0000132277655,"about_ca_system_score_gemma":0.000015291494,"threshold_uncertainty_score":0.46286175},"labels":[],"label_agreement":null},{"id":"W2144324631","doi":"10.1128/aem.00257-10","title":"Nonstarch Polysaccharides Modulate Bacterial Microbiota, Pathways for Butyrate Production, and Abundance of Pathogenic <i>Escherichia coli</i> in the Pig Gastrointestinal Tract","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":137,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; University of Alberta","funders":"Deutsche Forschungsgemeinschaft; Alberta Pulse Growers Commission; Deutscher Akademischer Austauschdienst; University of Saskatchewan","keywords":"Biology; Microbiology; Bacteroides; Escherichia coli; Prevotella; Biochemistry; Clostridium; Bacteria; Food science; Gene; Genetics","score_opus":0.007843631020646122,"score_gpt":0.1717628361749047,"score_spread":0.1639192051542586,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144324631","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99856067,0.00006756874,0.000005090545,0.0002809235,0.000085256244,0.00046470042,0.00050814106,0.000006875827,0.000020770207],"genre_scores_gemma":[0.99891686,0.00007466261,0.00058009464,0.000118151285,0.00008924974,0.00003060187,0.00017798464,0.0000019751,0.000010411398],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99913347,0.000030151055,0.00022183964,0.00033162453,0.000024716535,0.0002582301],"domain_scores_gemma":[0.9997361,0.000067400266,0.00009321727,0.000062947474,0.0000042059787,0.0000361773],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023620787,0.00015259796,0.00018055705,0.000010672125,0.00013431389,0.000019898176,0.00014323225,0.0000868603,0.000026062049],"category_scores_gemma":[0.0000063913008,0.0000671752,0.000037004294,0.000050902498,0.0003721808,0.000031528958,0.00006548126,0.00017609008,0.0000015162988],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000088285124,0.00016212666,0.004597345,0.000008574987,0.000004519375,6.8779843e-7,0.00012925078,7.1266163e-7,0.9928073,0.00014832073,0.0000071063328,0.0020457243],"study_design_scores_gemma":[0.0007948618,0.0009457917,0.42433608,0.00002514458,0.00003344548,0.00044145004,0.0007106457,0.000022883682,0.5693912,0.0006970984,0.0022038806,0.00039752483],"about_ca_topic_score_codex":0.000024609622,"about_ca_topic_score_gemma":0.00010455248,"teacher_disagreement_score":0.42341617,"about_ca_system_score_codex":0.00000770653,"about_ca_system_score_gemma":0.0000047746566,"threshold_uncertainty_score":0.27393252},"labels":[],"label_agreement":null},{"id":"W2144403704","doi":"10.1128/aem.68.9.4653-4657.2002","title":"Characterization of the Lipopolysaccharides and Capsules of <i>Shewanella</i> spp","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; University of Guelph","funders":"","keywords":"Shewanella oneidensis; Shewanella; Shewanella putrefaciens; Polysaccharide; Bacteria; Microbiology; Strain (injury); Gel electrophoresis; Chemistry; Polyacrylamide gel electrophoresis; Algae; Biochemistry; Biology; Botany; Enzyme; Anatomy","score_opus":0.003731456668995073,"score_gpt":0.13314235507823993,"score_spread":0.12941089840924486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144403704","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99911094,0.00010089932,0.0000066447296,0.000058395133,0.00004032848,0.00013613218,0.0000637032,0.0000031203003,0.00047984047],"genre_scores_gemma":[0.9988966,0.0007388179,0.000056990877,0.00013530305,0.000012247605,0.0000023569564,0.00002931836,0.000005354409,0.000122998],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995221,0.000016583755,0.00016275884,0.00016437861,0.00003204403,0.00010212769],"domain_scores_gemma":[0.9997542,0.000010893557,0.00011298262,0.00009896236,4.734651e-7,0.000022523875],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004619089,0.00008677365,0.00011830054,0.0000103823395,0.000051291958,0.0000028195032,0.00007541057,0.000067814886,0.0007467936],"category_scores_gemma":[0.00000107937,0.000061165454,0.000020584597,0.000036799775,0.0005265882,0.000026859749,0.0001600594,0.000043793974,0.000022964303],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000039509064,0.000037465197,0.012593576,0.000009698136,0.0000043068594,6.9157515e-8,0.00020675064,0.0000020050197,0.98499674,0.00001969243,0.00006474559,0.0020609805],"study_design_scores_gemma":[0.00018936436,0.000028956787,0.03753604,0.0000036344322,0.00001323525,0.000011161012,0.000059243084,0.000020253363,0.95926934,0.000033521334,0.0027579684,0.000077256685],"about_ca_topic_score_codex":0.00004055123,"about_ca_topic_score_gemma":0.000009322047,"teacher_disagreement_score":0.025727395,"about_ca_system_score_codex":0.000012900269,"about_ca_system_score_gemma":5.6648565e-7,"threshold_uncertainty_score":0.8176866},"labels":[],"label_agreement":null},{"id":"W2144441934","doi":"10.1128/aem.70.8.4569-4574.2004","title":"Expression and Immunogenicity of a Recombinant Diphtheria Toxin Fragment A in <i>Streptococcus gordonii</i>","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Toxin Mechanisms and Immunotoxins","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Izaak Walton Killam Health Centre; Dalhousie University","funders":"Canadian Institutes of Health Research; IWK Health Centre","keywords":"Streptococcus gordonii; Diphtheria toxin; Immunogenicity; Microbiology; Corynebacterium diphtheriae; Recombinant DNA; Biology; Molecular biology; Antibody; Antiserum; Cholera toxin; Virology; Toxin; Diphtheria; Streptococcaceae; Immunology; Biochemistry; Gene; Vaccination","score_opus":0.0038925896490240165,"score_gpt":0.17403085305694493,"score_spread":0.17013826340792093,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144441934","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956738,0.0033857103,0.00006165124,0.000047332065,0.00019689435,0.00042773283,0.000059855724,0.000014981579,0.00013207985],"genre_scores_gemma":[0.99834,0.000932216,0.00031599807,0.0001129221,0.000005056518,0.00006120095,0.00013023595,0.000016683725,0.00008564915],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988028,0.00005701733,0.0003797635,0.00040669416,0.00001348663,0.00034024494],"domain_scores_gemma":[0.9995977,0.00003243829,0.00012956104,0.00021580009,0.0000016598757,0.000022795637],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014146096,0.0002319785,0.00038635405,0.00006855978,0.00009581213,0.000005035038,0.00012397775,0.0003022852,0.00019409643],"category_scores_gemma":[0.0000028640823,0.00020022641,0.000047228506,0.000042135183,0.00042302214,0.000038090348,0.00026003996,0.00022382912,0.00003352958],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016152544,0.00031175985,0.0014094218,0.000013251514,0.00003751482,0.0000025539662,0.0005165456,0.0000047292333,0.9943072,0.00054847193,0.0000136744175,0.0026733463],"study_design_scores_gemma":[0.0044916295,0.00034211247,0.011481499,0.00004534479,0.000015738691,0.00008242832,0.0007916217,2.0431735e-7,0.9783295,0.0009824084,0.0032036018,0.0002339308],"about_ca_topic_score_codex":0.00010875702,"about_ca_topic_score_gemma":0.000014683644,"teacher_disagreement_score":0.015977725,"about_ca_system_score_codex":0.00006225597,"about_ca_system_score_gemma":0.000013206443,"threshold_uncertainty_score":0.8164996},"labels":[],"label_agreement":null},{"id":"W2144503611","doi":"10.1128/aem.00113-06","title":"Rapid, Sensitive, and Discriminating Identification of<i>Naegleria</i>spp. by Real-Time PCR and Melting-Curve Analysis","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"York University","keywords":"Naegleria; Melting curve analysis; Biology; High Resolution Melt; Naegleria fowleri; Polymerase chain reaction; Primer (cosmetics); Microbiology; Acanthamoeba; Genetics; Gene; Chemistry; Virology","score_opus":0.0033361245940712204,"score_gpt":0.19070161570759686,"score_spread":0.18736549111352563,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144503611","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983467,0.0007992028,0.00012258012,0.000043713964,0.000008701982,0.00012060283,0.00019225162,0.000003955854,0.00036231775],"genre_scores_gemma":[0.99640137,0.0014894056,0.00013490248,0.00003175986,0.00003126018,0.000007551582,0.0016411287,0.000010698112,0.00025192255],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991517,0.000050830713,0.00020687071,0.00038033933,0.00003178395,0.0001784409],"domain_scores_gemma":[0.99971044,0.000024565252,0.00009891138,0.00012220339,0.0000043108803,0.000039584746],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014021897,0.0001288005,0.00019323699,0.000045385812,0.00009607535,0.000014205722,0.00004513572,0.000122633,0.0000115949615],"category_scores_gemma":[0.0000034819343,0.00011902757,0.00003345438,0.000048885606,0.00042369342,0.0000037078778,0.0001470559,0.00005030768,0.0000025747318],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027865435,0.000037872673,0.004000453,0.000010764322,0.000092953815,6.590376e-7,0.00003591021,0.000002949274,0.99361044,0.000038637547,0.00025298994,0.0018885124],"study_design_scores_gemma":[0.00050053885,0.00008477089,0.036512814,0.0000026275322,0.000115801726,0.000023267345,0.0002747652,0.000090171125,0.9610513,0.000036633446,0.0011239165,0.00018340655],"about_ca_topic_score_codex":0.0001217562,"about_ca_topic_score_gemma":0.000008618265,"teacher_disagreement_score":0.032559145,"about_ca_system_score_codex":0.0000074659547,"about_ca_system_score_gemma":0.0000037061154,"threshold_uncertainty_score":0.48538035},"labels":[],"label_agreement":null},{"id":"W2144586180","doi":"10.1128/aem.00747-10","title":"Effects of Ammonium and Nitrite on Growth and Competitive Fitness of Cultivated Methanotrophic Bacteria","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial metabolism and enzyme function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":118,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Nitrite; Ammonium; Bacteria; Strain (injury); Biology; Denitrification; Microbiology; Nitrous oxide; Chemistry; Food science; Environmental chemistry; Nitrate; Botany; Ecology; Nitrogen; Genetics","score_opus":0.0016664218089368248,"score_gpt":0.15949145180374893,"score_spread":0.1578250299948121,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144586180","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991755,0.00033536967,0.000025797344,0.000013761314,0.00009589513,0.00016081854,0.00013333974,0.000002584648,0.00005694388],"genre_scores_gemma":[0.99855906,0.00076293276,0.00030895608,0.00008164492,0.000041501295,0.000007670357,0.00021180138,0.000010480846,0.000015952408],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99945736,0.000030779043,0.00012952447,0.0002514144,0.000015359268,0.0001155792],"domain_scores_gemma":[0.9997721,0.000025477882,0.00007511041,0.00008540329,0.0000035641451,0.00003834618],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000043884058,0.00013192171,0.00020399319,0.00003090644,0.000032506356,0.0000023063783,0.000040069448,0.00017213458,0.000008482094],"category_scores_gemma":[0.000007545191,0.00011527344,0.00002006651,0.000019418016,0.00041558954,0.0000022610377,0.00009945317,0.000086424814,7.495853e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029807747,0.00006285531,0.001100668,0.000064041116,0.000035863388,3.5557744e-7,0.00003709857,1.5299001e-7,0.9974061,0.00048561126,0.000017992723,0.0004911581],"study_design_scores_gemma":[0.0009628262,0.00022729707,0.028601926,0.000007788814,0.000030436822,0.000021287462,0.000034901565,2.7015489e-7,0.96827054,0.000038743954,0.0016954277,0.00010857416],"about_ca_topic_score_codex":0.000014468011,"about_ca_topic_score_gemma":0.0000025836941,"teacher_disagreement_score":0.029135605,"about_ca_system_score_codex":0.0000014000215,"about_ca_system_score_gemma":0.0000031295108,"threshold_uncertainty_score":0.47007146},"labels":[],"label_agreement":null},{"id":"W2144701572","doi":"10.1128/aem.70.12.7511-7519.2004","title":"Construction and Characterization of a Highly Efficient <i>Francisella</i> Shuttle Plasmid","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":156,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"National Institute of Allergy and Infectious Diseases; Medical College of Wisconsin; Great Lakes Regional Center of Excellence for Biodefense and Emerging Infectious Diseases Research","keywords":"Francisella tularensis; Francisella; Tularemia; Plasmid; Biology; Electroporation; Transformation (genetics); Shuttle vector; Microbiology; Escherichia coli; Multiple cloning site; Virology; Genetics; Gene; Expression vector; Vector (molecular biology); Virulence; Recombinant DNA","score_opus":0.0023827048634091495,"score_gpt":0.16219738051011975,"score_spread":0.1598146756467106,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144701572","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987112,0.00015308228,0.00058985077,0.000038744834,0.00005763946,0.0001468653,0.00012980336,0.000003338992,0.00016944438],"genre_scores_gemma":[0.99850154,0.00059184636,0.00028844902,0.000077608434,0.000042486783,0.000008540672,0.00046302105,0.0000091336915,0.00001738589],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994528,0.000011199487,0.00012889427,0.00023912913,0.000024746681,0.00014318207],"domain_scores_gemma":[0.9998076,0.0000037498178,0.000048599995,0.00009153547,0.000003304001,0.000045189245],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000050917453,0.000098343815,0.00012066143,0.000022609142,0.00005301918,0.000005350512,0.000039889048,0.00012205404,0.0000146778375],"category_scores_gemma":[0.0000015178475,0.00009142778,0.000018763516,0.0000214229,0.00037527064,0.0000013917756,0.00008200555,0.00004377575,0.000005329114],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009487389,0.000042281525,0.0003967241,0.000012405127,0.000014055617,3.0089788e-7,0.000045889177,0.000012204558,0.9954997,0.00025242814,0.0000032421976,0.0036259394],"study_design_scores_gemma":[0.0010146665,0.00015986229,0.003563731,0.000003945591,0.000007750884,0.000052259027,0.000051354964,0.000003084488,0.9882799,0.00004487322,0.0067086974,0.00010991051],"about_ca_topic_score_codex":0.000004859267,"about_ca_topic_score_gemma":0.0000011627453,"teacher_disagreement_score":0.0072197914,"about_ca_system_score_codex":0.000009495,"about_ca_system_score_gemma":0.000009688338,"threshold_uncertainty_score":0.37283167},"labels":[],"label_agreement":null},{"id":"W2144744519","doi":"10.1128/aem.01129-08","title":"Broiler <i>Campylobacter</i> Contamination and Human Campylobacteriosis in Iceland","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency; Public Health Agency of Canada","funders":"Agricultural Research Service; University of British Columbia; University of Washington; U.S. Department of Agriculture","keywords":"Campylobacteriosis; Broiler; Campylobacter; Contamination; Biology; Veterinary medicine; Flock; Human health; Food science; Medicine; Bacteria; Environmental health; Genetics","score_opus":0.008216279834127075,"score_gpt":0.1668426837460328,"score_spread":0.15862640391190574,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144744519","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99873275,0.00023030907,7.43433e-7,0.00016298775,0.0000391409,0.00017549444,0.00006082712,0.000021427182,0.00057631696],"genre_scores_gemma":[0.99803394,0.0005713768,0.000018663663,0.00074554526,0.000063283514,0.00002290421,0.00046041232,0.000001817157,0.00008205211],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989193,0.00007134815,0.000250279,0.00042097678,0.000027236048,0.00031087062],"domain_scores_gemma":[0.9996832,0.000111922825,0.00007477117,0.000049628437,0.0000018396224,0.00007863827],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011213578,0.00018869368,0.00028704506,0.000018263678,0.00018399529,0.000009217146,0.000086782406,0.00019899855,0.00015841026],"category_scores_gemma":[0.0000028571244,0.00009378253,0.000029380417,0.000054127555,0.0003426758,0.000048841604,0.000111890746,0.00012796845,0.000021454407],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013339146,0.00004160656,0.3371242,0.0000017918261,0.000005373405,0.000006163835,0.00007406448,1.0873313e-7,0.6594358,0.00006476603,0.000055445344,0.0031773488],"study_design_scores_gemma":[0.000441806,0.00012715708,0.9842481,0.0000041714907,0.0000067724836,0.00024291304,0.00019113327,9.4953725e-7,0.0032903585,0.00011478739,0.011129769,0.00020208616],"about_ca_topic_score_codex":0.00024544413,"about_ca_topic_score_gemma":0.00029776996,"teacher_disagreement_score":0.6561454,"about_ca_system_score_codex":0.000030318259,"about_ca_system_score_gemma":0.000001454101,"threshold_uncertainty_score":0.38243404},"labels":[],"label_agreement":null},{"id":"W2144916169","doi":"10.1128/aem.68.11.5258-5264.2002","title":"Postadaptational Resistance to Benzalkonium Chloride and Subsequent Physicochemical Modifications of <i>Listeria monocytogenes</i>","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":193,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Dairy Farmers of Ontario; Natural Sciences and Engineering Research Council of Canada; Canadian Food Inspection Agency","keywords":"Benzalkonium chloride; Listeria monocytogenes; Microbiology; Efflux; Strain (injury); Biology; Bacteria; Chemistry; Biochemistry; Chromatography","score_opus":0.030374435595379782,"score_gpt":0.23418586184108245,"score_spread":0.20381142624570267,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144916169","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99749184,0.0008499571,0.00024405315,0.00020195328,0.000047523237,0.00020759596,0.00037009802,0.0000053768654,0.000581583],"genre_scores_gemma":[0.99697065,0.00040855198,0.0013753518,0.00049682957,0.00006353808,0.000045049655,0.00043092674,0.00001746938,0.00019163678],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991494,0.000017122322,0.0002155019,0.0004049452,0.000033352964,0.00017969088],"domain_scores_gemma":[0.99959385,0.000011537006,0.00006917655,0.00024263348,0.000005367362,0.00007745135],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000040434537,0.0001612632,0.00016683515,0.000022711034,0.000065042055,0.0000071045984,0.000111386165,0.00011702438,0.000021518379],"category_scores_gemma":[0.000003182073,0.00016392599,0.000031965395,0.00003007682,0.0002678667,0.0000032416074,0.00023251494,0.000041905285,0.000007914568],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014011523,0.000060011975,0.0003933679,0.000011773362,0.00003257921,3.6006554e-7,0.00009233202,0.00001557821,0.99815184,0.00048814077,0.00026274667,0.0003511397],"study_design_scores_gemma":[0.00045060288,0.00008589048,0.002285927,0.0000036747251,0.00001736725,0.000026666274,0.00009376079,0.0000064684114,0.9751555,0.000072470524,0.0216133,0.00018838535],"about_ca_topic_score_codex":0.0000032170406,"about_ca_topic_score_gemma":0.0000056751337,"teacher_disagreement_score":0.022996368,"about_ca_system_score_codex":0.000021572905,"about_ca_system_score_gemma":0.000005010748,"threshold_uncertainty_score":0.6684708},"labels":[],"label_agreement":null},{"id":"W2145014826","doi":"10.1128/aem.01138-14","title":"Analysis of Strains Lacking Known Osmolyte Accumulation Mechanisms Reveals Contributions of Osmolytes and Transporters to Protection against Abiotic Stress","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Ion Transport and Channel Regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Center for Research Resources; National Institute of General Medical Sciences; Canadian Institutes of Health Research","keywords":"Osmolyte; Osmoprotectant; Betaine; Dimethylsulfoniopropionate; Chemistry; Biochemistry; Trehalose; Osmotic shock; Glycine; Abiotic stress; Ectoine; Proline; Amino acid; Organic chemistry","score_opus":0.006057784749023125,"score_gpt":0.2045068667463063,"score_spread":0.19844908199728317,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145014826","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96846884,0.000046388224,0.030840421,0.000029917175,0.000019784726,0.00024765966,0.0003223779,0.0000039191536,0.000020688176],"genre_scores_gemma":[0.99773574,0.000052622192,0.00020044575,0.000052182502,0.000016887623,0.000011771349,0.0019112161,0.000007668087,0.0000114463855],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99934894,0.000023833032,0.0002330819,0.00024194043,0.00003041672,0.00012179284],"domain_scores_gemma":[0.99972916,0.000006593327,0.000107126085,0.000107715554,0.000007891774,0.000041502266],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010945553,0.000111458714,0.0002195202,0.000091108974,0.000049746912,0.0000029469707,0.00004077205,0.00014059684,0.000007914303],"category_scores_gemma":[0.0000026271475,0.0001094129,0.000055393688,0.0000764771,0.000111788904,0.0000032387688,0.000017418322,0.000035064146,3.1854577e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000045461336,0.000040667044,0.0035437052,0.000020902415,0.00015728796,7.196843e-8,0.00013062684,0.0011582965,0.99181074,0.00021943072,9.59862e-7,0.002871858],"study_design_scores_gemma":[0.0004943378,0.00019293072,0.12899356,0.000011656477,0.00023198397,0.0000015436835,0.00017503454,0.00032085882,0.8692267,0.00013004804,0.00008626855,0.00013510755],"about_ca_topic_score_codex":0.00001029524,"about_ca_topic_score_gemma":0.000023733957,"teacher_disagreement_score":0.12544985,"about_ca_system_score_codex":0.000008819916,"about_ca_system_score_gemma":0.0000034380964,"threshold_uncertainty_score":0.44617286},"labels":[],"label_agreement":null},{"id":"W2145050746","doi":"10.1128/aem.02711-06","title":"Metal Ions May Suppress or Enhance Cellular Differentiation in <i>Candida albicans</i> and <i>Candida tropicalis</i> Biofilms","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary","funders":"Adobe Systems","keywords":"Biofilm; Candida tropicalis; Candida albicans; Microbiology; Hypha; Yeast; Biology; Metal ions in aqueous solution; Corpus albicans; Metal; Cell wall; Chemistry; Bacteria; Biochemistry; Genetics","score_opus":0.005648766019734745,"score_gpt":0.2231924261214635,"score_spread":0.21754366010172876,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145050746","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979351,0.0006538429,0.00026758105,0.00014076062,0.00005470541,0.00035736623,0.00008153547,0.000015857313,0.00049325643],"genre_scores_gemma":[0.9977507,0.0005933018,0.00021108406,0.00054708455,0.00004566609,0.000015265634,0.00032569584,0.000015276797,0.0004958966],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987827,0.000029381152,0.00030634602,0.00046060455,0.00005648039,0.00036449227],"domain_scores_gemma":[0.99954855,0.000081293794,0.000059569094,0.00018240079,0.0000021987569,0.00012597028],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013787654,0.00020135235,0.00036818514,0.000062214756,0.00008357964,0.00000858484,0.000052910786,0.0001853196,0.00026863205],"category_scores_gemma":[0.0000058176033,0.0001532366,0.000042752978,0.00006520751,0.00044422265,0.000035598103,0.00007400901,0.00020422132,0.000011839713],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005393025,0.00017135039,0.1132293,0.000033383792,0.000026863956,0.00002170358,0.0001420658,1.554246e-7,0.88374203,0.00010822569,0.000054539098,0.0019310571],"study_design_scores_gemma":[0.0024365985,0.00029054028,0.45974433,0.000027559465,0.000101930425,0.00007641362,0.0010074108,0.000005578523,0.52886945,0.00006733584,0.007074543,0.0002983095],"about_ca_topic_score_codex":0.000058537975,"about_ca_topic_score_gemma":0.00023449973,"teacher_disagreement_score":0.35487258,"about_ca_system_score_codex":0.00006142109,"about_ca_system_score_gemma":0.000011468874,"threshold_uncertainty_score":0.62488073},"labels":[],"label_agreement":null},{"id":"W2145181354","doi":"10.1128/aem.68.8.3683-3690.2002","title":"Inhibition of <i>Listeria innocua</i> in Cheddar Cheese by Addition of Nisin Z in Liposomes or by In Situ Production in Mixed Culture","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":157,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Dairy Farmers of Canada","keywords":"Nisin; Lactococcus lactis; Starter; Food science; Bacteriocin; Listeria; Chemistry; Cheese ripening; Listeria monocytogenes; Cheesemaking; Ripening; Lactic acid; Bacteria; Biology; Antimicrobial","score_opus":0.006476655327649477,"score_gpt":0.16051566877953466,"score_spread":0.15403901345188517,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145181354","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99883616,0.00033153658,8.8535295e-8,0.00017110207,0.000026774967,0.00026319496,0.00022937739,0.0000031644654,0.00013861382],"genre_scores_gemma":[0.9980522,0.0007088467,0.000020889796,0.00006613959,0.000011146155,0.000019895542,0.0010744645,0.0000011921941,0.000045236717],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99916863,0.00004558642,0.0003236632,0.00026361755,0.000028469669,0.0001699995],"domain_scores_gemma":[0.9998407,0.000012535335,0.000094235846,0.000033500135,0.0000014658577,0.000017607561],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000100392164,0.00011648249,0.00022070305,0.000032553144,0.000014035697,0.0000034742484,0.000053558226,0.00018074164,0.00009865804],"category_scores_gemma":[0.0000034710013,0.000059648533,0.000015800262,0.00019584899,0.00013889279,0.000051976738,0.000049933118,0.000120144185,0.0000024661636],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000082745326,0.00052913034,0.0047338996,0.000013263251,0.0000021809087,0.00000106094,0.00027407196,0.0000016469002,0.98981845,0.000006479727,0.00034117463,0.0041959123],"study_design_scores_gemma":[0.0011069388,0.0003734934,0.0973221,0.00006174658,0.0000031216928,0.000009318531,0.0011323497,0.000005106582,0.8980654,0.00011544254,0.0016136046,0.00019139782],"about_ca_topic_score_codex":0.00008509011,"about_ca_topic_score_gemma":0.00075855997,"teacher_disagreement_score":0.0925882,"about_ca_system_score_codex":0.00004980214,"about_ca_system_score_gemma":9.658285e-7,"threshold_uncertainty_score":0.24323966},"labels":[],"label_agreement":null},{"id":"W2145322604","doi":"10.1128/aem.71.1.480-486.2005","title":"Nearly Identical Bacteriophage Structural Gene Sequences Are Widely Distributed in both Marine and Freshwater Environments","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":223,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Phylogenetic tree; Arctic; Prochlorococcus; Archaea; Cyanobacteria; Salinity; Amplicon; Picoplankton; Species richness; Temperature gradient gel electrophoresis; Ecology; Gene; Synechococcus; 16S ribosomal RNA; Genetics; Bacteria; Polymerase chain reaction","score_opus":0.003948555765695307,"score_gpt":0.18540598872574118,"score_spread":0.18145743296004588,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145322604","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99879605,0.00007691113,0.000041895513,0.0002590393,0.00006364641,0.00022939364,0.0003769954,0.000014974496,0.00014108373],"genre_scores_gemma":[0.99678284,0.00020705083,0.0016004163,0.00052695675,0.000046506695,0.000020744941,0.0005033688,0.00002005751,0.000292035],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985648,0.000039281862,0.00034308792,0.00056512427,0.000050515322,0.00043720464],"domain_scores_gemma":[0.99957764,0.000022639215,0.00010149292,0.00017016468,3.1314198e-7,0.00012776454],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007532951,0.00027906086,0.00027106816,0.000035849655,0.00014818822,0.00004872652,0.00014112392,0.00015623799,0.0035177106],"category_scores_gemma":[0.0000018181411,0.0002499494,0.000037116588,0.000043866225,0.00070074294,0.0002243818,0.00058380794,0.00022320326,0.0002518534],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035443234,0.00005699731,0.047523774,0.0000029136086,0.000014521468,0.000014734144,0.00013828986,0.000036034275,0.94843626,0.000008287038,0.00007685844,0.0036558863],"study_design_scores_gemma":[0.0009310567,0.0000671098,0.92393917,0.0000062273257,0.00002370693,0.00032743925,0.00016011759,0.00013379577,0.05120971,0.00008907487,0.022734364,0.00037820003],"about_ca_topic_score_codex":0.00037119997,"about_ca_topic_score_gemma":0.0010734078,"teacher_disagreement_score":0.8972266,"about_ca_system_score_codex":0.00019515463,"about_ca_system_score_gemma":0.0000019746828,"threshold_uncertainty_score":0.9999953},"labels":[],"label_agreement":null},{"id":"W2145378532","doi":"10.1128/aem.72.5.3096-3102.2006","title":"Elimination of<i>Escherichia coli</i>O157:H7 from Fermented Dry Sausages at an Organoleptically Acceptable Level of Microencapsulated Allyl Isothiocyanate","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Meat and Animal Product Quality","field":"Agricultural and Biological Sciences","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Starter; Allyl isothiocyanate; Food science; Fermentation; Escherichia coli; Chemistry; Bacteria; Water activity; Food microbiology; Biology; Water content; Biochemistry","score_opus":0.020344564240474265,"score_gpt":0.19711314180492673,"score_spread":0.17676857756445247,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145378532","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99832016,0.00018379788,0.0000076053066,0.00013336247,0.0000325885,0.0002019599,0.0007745381,0.00001872788,0.0003272464],"genre_scores_gemma":[0.9967812,0.00009332818,0.0004498362,0.00016001321,0.000058994166,0.000005408139,0.002215456,0.000002741989,0.00023303345],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988229,0.0000717792,0.00038036157,0.00041503782,0.000062266954,0.00024764342],"domain_scores_gemma":[0.99962306,0.000056461,0.00017715785,0.0000810203,0.000008916553,0.00005339726],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013269464,0.00018858895,0.00031195194,0.000011487705,0.00011448328,0.000009368605,0.00016406518,0.00017190285,0.00089910347],"category_scores_gemma":[0.000003278609,0.00009746926,0.00004770706,0.000079974234,0.0003178463,0.000056539266,0.00015040053,0.00008518948,0.000020037476],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000106174084,0.00026901098,0.007284276,0.000008091982,0.000022717228,7.637248e-7,0.000058999685,0.000002352008,0.98920625,0.00017137206,0.00008832766,0.002781664],"study_design_scores_gemma":[0.00026471185,0.00016576187,0.37102914,0.000004202063,0.000022234984,0.0000017038933,0.00018043135,0.0000065667655,0.6269614,0.00022533046,0.0009997942,0.0001387098],"about_ca_topic_score_codex":0.00076122687,"about_ca_topic_score_gemma":0.0002680336,"teacher_disagreement_score":0.36374488,"about_ca_system_score_codex":0.000030611376,"about_ca_system_score_gemma":0.0000033082117,"threshold_uncertainty_score":0.9844553},"labels":[],"label_agreement":null},{"id":"W2145473801","doi":"10.1128/aem.72.1.491-496.2006","title":"Aerobic Biodegradation of 2,2′-Dithiodibenzoic Acid Produced from Dibenzothiophene Metabolites","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Directorate for Biological Sciences; University of Alberta","keywords":"Dibenzothiophene; Biodegradation; Benzoic acid; Chemistry; Sulfur; Metabolite; Biochemistry; Enrichment culture; Organic chemistry; Bacteria; Nuclear chemistry; Biology","score_opus":0.003198416966423988,"score_gpt":0.15189568396275838,"score_spread":0.1486972669963344,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145473801","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99808794,0.00030589188,0.000035953504,0.00008970743,0.00009766668,0.0002450581,0.00031331705,0.000026080563,0.00079840526],"genre_scores_gemma":[0.9968777,0.00009905522,0.001429096,0.00020268689,0.000055006534,0.000007603878,0.0012121575,0.0000139322865,0.000102771555],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988125,0.00003857439,0.00034457378,0.00047652144,0.00007189542,0.0002559281],"domain_scores_gemma":[0.9995383,0.000026354599,0.00017436242,0.00020754263,0.0000012519464,0.00005216264],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009768654,0.00021397555,0.00025937267,0.000033523014,0.000081981416,0.0000109936045,0.00014448464,0.00015089518,0.0019240377],"category_scores_gemma":[0.0000029236824,0.00018321924,0.00004626647,0.000089307396,0.00044774442,0.00007016125,0.00016239523,0.00009001854,0.00034767823],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025186646,0.000120043915,0.022867776,0.0000030775168,0.000013120073,4.8287313e-7,0.00006314049,0.000008093206,0.9743063,0.000074556,0.00058781414,0.0019304081],"study_design_scores_gemma":[0.0005329037,0.000032981407,0.08214337,0.00000242249,0.000026220128,0.000004889318,0.000054463755,0.0000060654706,0.9106864,0.000305922,0.0060034087,0.00020096966],"about_ca_topic_score_codex":0.00033407402,"about_ca_topic_score_gemma":0.00006147939,"teacher_disagreement_score":0.06361991,"about_ca_system_score_codex":0.000054705568,"about_ca_system_score_gemma":0.0000038781764,"threshold_uncertainty_score":0.99898833},"labels":[],"label_agreement":null},{"id":"W2145641043","doi":"10.1128/aem.01974-06","title":"Increased Insect Virulence in <i>Beauveria bassiana</i> Strains Overexpressing an Engineered Chitinase","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Studies on Chitinases and Chitosanases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":218,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Brock University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Beauveria bassiana; Chitinase; Bassiana; Chitin; Biology; Microbiology; Virulence; Entomopathogenic fungus; Insect; Beauveria; Biological pest control; Enzyme; Gene; Biochemistry; Botany","score_opus":0.0037164839553454634,"score_gpt":0.17317117913363522,"score_spread":0.16945469517828976,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145641043","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976796,0.00064782886,0.000049534592,0.000017253438,0.000038158527,0.0001508308,0.000383358,0.000012416459,0.0010210227],"genre_scores_gemma":[0.99724865,0.00018231345,0.00027240143,0.00037395034,0.00015044886,0.000026409234,0.0017040133,0.000022501536,0.000019334879],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989412,0.000037352882,0.00020855376,0.00046114405,0.0000307606,0.00032101944],"domain_scores_gemma":[0.99966687,0.000010475973,0.000057290446,0.00020187844,0.0000013163785,0.00006214032],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000055052446,0.0002234736,0.00019266388,0.00003671165,0.00009853407,0.000014305434,0.000107282794,0.0001478763,0.000032750155],"category_scores_gemma":[0.0000032930711,0.00022184235,0.00003930735,0.00003475949,0.00022783977,0.000004833499,0.00012193332,0.000092697104,0.0000036383742],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004216577,0.00016197523,0.007760175,0.000007862101,0.000012992845,0.000009808699,0.000018809335,0.00005318161,0.9907921,0.00009534607,0.00013559092,0.0009100242],"study_design_scores_gemma":[0.0023011882,0.00033790755,0.23594272,0.000017333217,0.000020793945,0.000118541684,0.00063999515,0.000032183038,0.754411,0.00009759493,0.0054870653,0.00059371674],"about_ca_topic_score_codex":0.00017708351,"about_ca_topic_score_gemma":0.000299893,"teacher_disagreement_score":0.2363811,"about_ca_system_score_codex":0.000017864275,"about_ca_system_score_gemma":0.0000112216285,"threshold_uncertainty_score":0.9046468},"labels":[],"label_agreement":null},{"id":"W2145789163","doi":"10.1128/aem.01904-06","title":"Identification and Expression of Benzylsuccinate Synthase Genes in a Toluene-Degrading Methanogenic Consortium","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Toluene; Biodegradation; Gene; Biochemistry; ATP synthase; Biology; Chemistry; Transcription (linguistics); Microbiology; Organic chemistry; Ecology","score_opus":0.0026687594467666503,"score_gpt":0.17478550923484504,"score_spread":0.1721167497880784,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145789163","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99582064,0.0037357074,0.0002198335,0.000013581938,0.000047538335,0.000112776775,0.00002778944,0.000004231972,0.000017895123],"genre_scores_gemma":[0.9987712,0.00067977834,0.00023954359,0.000012970123,0.000049467464,0.000011386823,0.00016901763,0.00000882627,0.000057817757],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993886,0.000019966523,0.00018605884,0.0002730143,0.000014280268,0.000118111784],"domain_scores_gemma":[0.9998075,0.0000031603456,0.000062912615,0.00010707619,0.0000018150802,0.000017585986],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009392104,0.00009969997,0.00012600631,0.000045534478,0.000027537342,0.0000037250568,0.000037124424,0.00010671232,0.0000043973996],"category_scores_gemma":[0.0000025310478,0.000095303665,0.000018252613,0.000026516047,0.00010902304,0.0000024650049,0.00005362452,0.000039263025,9.791195e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025048592,0.00003848275,0.002194537,0.000016539949,0.000005816322,3.0540278e-7,0.000014105512,0.00004472628,0.99593925,0.000039220475,0.000020453726,0.0016615195],"study_design_scores_gemma":[0.00033322282,0.000028382548,0.007910779,0.0000054563397,0.00001030608,0.000035420166,0.000049187955,0.000006011935,0.9902267,0.00003264443,0.0012617983,0.00010011327],"about_ca_topic_score_codex":0.000023977509,"about_ca_topic_score_gemma":0.0000071563227,"teacher_disagreement_score":0.005716242,"about_ca_system_score_codex":0.0000066080265,"about_ca_system_score_gemma":0.000002796019,"threshold_uncertainty_score":0.38863707},"labels":[],"label_agreement":null},{"id":"W2145817470","doi":"10.1128/aem.70.11.6678-6685.2004","title":"Novel Sulfonolipid in the Extremely Halophilic Bacterium <i>Salinibacter ruber</i>","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Halophile; Bacteria; Biology; Flavobacterium; Halobacterium; Cytophaga; Ion chromatography; Biochemistry; Chemistry; Microbiology; Pseudomonas","score_opus":0.007623204436828497,"score_gpt":0.17474820810475378,"score_spread":0.1671250036679253,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145817470","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949282,0.000042687163,0.000044760396,0.0007234281,0.000096377364,0.00028602197,0.000050117054,0.000015507976,0.0038129403],"genre_scores_gemma":[0.99384415,0.00009130215,0.0004359626,0.0051817745,0.000042615815,0.00003627548,0.0003107739,0.00001460956,0.000042550626],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988032,0.000088606845,0.00025434874,0.00038924065,0.000032467808,0.0004321377],"domain_scores_gemma":[0.9994561,0.00008620644,0.00006912827,0.00033935384,4.4257501e-7,0.00004873605],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00023464307,0.0002309484,0.00023578308,0.000030623305,0.00020833935,0.000011847794,0.00040140518,0.00022212008,0.0017462922],"category_scores_gemma":[0.0000028165064,0.00017767883,0.000045691286,0.00008395654,0.00091547985,0.000065071734,0.00039707645,0.00039073508,0.00059756776],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004292254,0.00028655972,0.0031188645,0.0000027028927,0.000008686577,0.0000033177662,0.0009217608,0.0000679048,0.99425656,0.00032237984,0.00027239294,0.00069596904],"study_design_scores_gemma":[0.006141038,0.00052459456,0.7369244,0.000014914324,0.000055977347,0.0011616115,0.0015588546,0.0000062953336,0.033916455,0.0056827455,0.21278705,0.0012260451],"about_ca_topic_score_codex":0.00023126605,"about_ca_topic_score_gemma":0.00056589715,"teacher_disagreement_score":0.9603401,"about_ca_system_score_codex":0.00009951841,"about_ca_system_score_gemma":0.0000057708494,"threshold_uncertainty_score":0.99916625},"labels":[],"label_agreement":null},{"id":"W2145844816","doi":"10.1128/aem.67.2.827-833.2001","title":"Discovery and Description of Giant Submarine Smectite Cones on the Seafloor in Eyjafjordur, Northern Iceland, and a Novel Thermal Microbial Habitat","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":104,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Geological Survey of Canada","funders":"","keywords":"Archaea; Thermophile; Biology; Extremophile; Microbial mat; Geothermal gradient; Seawater; Halophile; Hot spring; Hydrothermal vent; Extreme environment; Ecology; Bacteria; Hydrothermal circulation; Paleontology; Cyanobacteria","score_opus":0.007830557457466176,"score_gpt":0.16622647430994905,"score_spread":0.1583959168524829,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145844816","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985664,0.000078569916,0.000021012227,0.0002910872,0.00004061022,0.00027913705,0.000062694,0.0000053727163,0.00065515726],"genre_scores_gemma":[0.9988176,0.0002861377,0.00004666648,0.0006133379,0.000014614924,0.000015023146,0.000081815866,0.00001118077,0.000113606475],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99912006,0.000099254685,0.00020215975,0.00030477415,0.000022975437,0.00025078145],"domain_scores_gemma":[0.9995716,0.0001461576,0.00008291441,0.0001643779,7.842165e-7,0.00003413675],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017864961,0.00018570897,0.00023892728,0.00003397925,0.00016229098,0.000011138444,0.000119525255,0.00014594459,0.00017631333],"category_scores_gemma":[0.0000039869897,0.00013647208,0.000023476341,0.00005018588,0.0011837753,0.00007162856,0.00036915194,0.0002371785,0.000022265665],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024566407,0.00015639745,0.14795667,0.000005667344,0.000015370151,0.0000025287586,0.000332953,0.000026769685,0.8503457,0.00019661535,0.000028933386,0.0006867394],"study_design_scores_gemma":[0.0016328761,0.00032311297,0.9805088,0.000011302223,0.00002332022,0.00017701695,0.00065606873,0.000028983804,0.014407296,0.00039493616,0.0015725922,0.0002636923],"about_ca_topic_score_codex":0.0004615317,"about_ca_topic_score_gemma":0.0068003447,"teacher_disagreement_score":0.8359384,"about_ca_system_score_codex":0.000041789586,"about_ca_system_score_gemma":0.00000329295,"threshold_uncertainty_score":0.556517},"labels":[],"label_agreement":null},{"id":"W2145951154","doi":"10.1128/aem.01330-06","title":"Characterization of Environmental Sources of the Human and Animal Pathogen <i>Cryptococcus gattii</i> in British Columbia, Canada, and the Pacific Northwest of the United States","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":236,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Centre for Disease Control; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC; British Columbia Lung Association","keywords":"Cryptococcus gattii; Colonization; Biology; Ecology; Cryptococcosis; Outbreak; Propagule; Veterinary medicine; Microbiology","score_opus":0.0019330221468700061,"score_gpt":0.14248167617625443,"score_spread":0.14054865402938443,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145951154","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984781,0.00022253694,2.1429067e-7,0.00006312694,0.00001365026,0.00036512193,0.00082616194,0.0000011585216,0.000029943933],"genre_scores_gemma":[0.9993137,0.00032787852,0.0000024631877,0.00007582832,0.000008291519,0.000014016805,0.0002054493,0.0000056195386,0.00004673038],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99950534,0.000039161187,0.0002110794,0.00011975774,0.000033643308,0.000091018985],"domain_scores_gemma":[0.9997467,0.000033870852,0.00011951067,0.00008664573,0.000001537739,0.000011730941],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000056935558,0.000068578156,0.00019946983,0.000012197309,0.00012891053,0.0000048652187,0.00003512556,0.00004227197,0.000014397426],"category_scores_gemma":[9.63358e-7,0.000050571678,0.000021104199,0.00004319522,0.0011607283,0.000008258502,0.00009712816,0.000072102564,4.43518e-8],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010781285,0.000039515322,0.48427257,0.000011879715,0.0000121683215,2.9474546e-7,0.00011297627,0.0000010100607,0.51545423,0.0000068783825,0.0000071496697,0.000070533206],"study_design_scores_gemma":[0.0010196931,0.000055026412,0.9849213,0.00001716685,0.000037499176,0.000041722833,0.0010715119,0.0000027261415,0.0122155305,0.000018343457,0.0005522809,0.00004723642],"about_ca_topic_score_codex":0.26615655,"about_ca_topic_score_gemma":0.39710632,"teacher_disagreement_score":0.5032387,"about_ca_system_score_codex":0.000020968928,"about_ca_system_score_gemma":0.000006761402,"threshold_uncertainty_score":0.7387302},"labels":[],"label_agreement":null},{"id":"W2145994037","doi":"10.1128/aem.02636-10","title":"Investigation of Genotypes of Borrelia burgdorferi in Ixodes scapularis Ticks Collected during Surveillance in Canada","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":99,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases","keywords":"Ixodes scapularis; Borrelia burgdorferi; Lyme disease; Biology; Tick; Multilocus sequence typing; Ixodes; Borrelia; Virology; Genetic diversity; Genotype; Ixodidae; Genetics; Population; Gene; Medicine","score_opus":0.005385100699291642,"score_gpt":0.14521567709668026,"score_spread":0.1398305763973886,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145994037","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983769,0.0010788323,0.0000016085794,0.000005311093,0.000072845716,0.00018819899,0.00013084942,0.000006207053,0.00013924128],"genre_scores_gemma":[0.9995696,0.00015626036,0.000027046648,0.000026435904,0.0000025624229,0.000016680311,0.00017569863,0.000009902205,0.0000157941],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99910456,0.00008601676,0.0003434567,0.00023366525,0.000011113976,0.00022121424],"domain_scores_gemma":[0.9996728,0.00004999455,0.00013165073,0.00012528786,0.000003656233,0.000016621283],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006430355,0.0001355104,0.0003195153,0.00009998149,0.00002865031,7.3118474e-7,0.00008406915,0.00013891765,0.00019410592],"category_scores_gemma":[0.000007652162,0.00013782052,0.000019397094,0.000099251774,0.00033449705,0.000018413142,0.00007112119,0.00011785149,0.0000052944683],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007935941,0.000028767181,0.4553407,0.00001568467,0.000023225746,0.0000015977021,0.00022569064,0.0000062005315,0.54419106,0.000021412867,0.000011103278,0.000055182656],"study_design_scores_gemma":[0.00066675275,0.000033935215,0.6320263,0.0000081663065,0.0000059538293,0.000015320424,0.00022010939,6.399533e-7,0.36688036,0.000041790023,0.000017223401,0.00008345215],"about_ca_topic_score_codex":0.31955487,"about_ca_topic_score_gemma":0.36280692,"teacher_disagreement_score":0.1773107,"about_ca_system_score_codex":0.00014933987,"about_ca_system_score_gemma":0.000093028524,"threshold_uncertainty_score":0.6849763},"labels":[],"label_agreement":null},{"id":"W2146057108","doi":"10.1128/aem.72.4.2691-2706.2006","title":"Oligonucleotide Array for Identification and Detection of <i>Pythium</i> Species","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":110,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Pythium; Biology; Oligonucleotide; GenBank; Ribosomal DNA; Oligomer restriction; Polymerase chain reaction; Botany; DNA barcoding; DNA–DNA hybridization; DNA; Genetics; Phylogenetics; Gene; Evolutionary biology","score_opus":0.003937228891503406,"score_gpt":0.13967000615574743,"score_spread":0.13573277726424401,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146057108","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988641,0.00027674547,0.00009932292,0.000053849362,0.000026798003,0.00012940682,0.00034961934,0.0000070247715,0.00019309434],"genre_scores_gemma":[0.9992305,0.00016270748,0.00009786995,0.00003331885,0.000050139606,0.000009940045,0.00024939858,5.616797e-7,0.00016558269],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996192,0.0000073278547,0.000113457216,0.00015472721,0.000012956429,0.00009232364],"domain_scores_gemma":[0.9998689,0.00003934447,0.000058207836,0.000018535251,0.000001360373,0.000013604853],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000048609065,0.00006182797,0.00008946631,0.000004834806,0.00008741398,0.000006443915,0.000030044806,0.000055267727,0.000008649974],"category_scores_gemma":[6.913316e-7,0.000027804128,0.000018730967,0.000018411949,0.00012905529,0.000014691916,0.000014013104,0.000021325604,0.0000016928113],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017558974,0.000020207799,0.00091937504,0.0000050745657,0.0000029022763,8.129953e-8,0.000004597805,7.4288073e-7,0.9950035,0.00017266796,0.00002862572,0.0038246536],"study_design_scores_gemma":[0.000096467935,0.00003904867,0.20913155,0.0000016333715,0.000007401226,0.000011260038,0.000101497135,0.0000014838947,0.7727422,0.0002892601,0.01751406,0.00006414325],"about_ca_topic_score_codex":0.000015523572,"about_ca_topic_score_gemma":0.00007613305,"teacher_disagreement_score":0.22226132,"about_ca_system_score_codex":0.000005582093,"about_ca_system_score_gemma":3.2651164e-7,"threshold_uncertainty_score":0.11338194},"labels":[],"label_agreement":null},{"id":"W2146082888","doi":"10.1128/aem.67.3.1388-1391.2001","title":"Substrate Selectivity of a 3-Nitrophenol-Induced Metabolic System in <i>Pseudomonas putida</i> 2NP8 Transforming Nitroaromatic Compounds into Ammonia under Aerobic Conditions","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"","keywords":"Pseudomonas putida; Nitrophenol; Ammonia; Substrate (aquarium); Chemistry; Selectivity; Stoichiometry; Pseudomonas; Pseudomonas aeruginosa; Enzyme; Combinatorial chemistry; Biochemistry; Bacteria; Organic chemistry; Biology; Catalysis","score_opus":0.006419739076094878,"score_gpt":0.18631195037674836,"score_spread":0.17989221130065347,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146082888","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99844676,0.00014446257,0.000050935923,0.000031278254,0.000041451956,0.00049278827,0.00002744299,0.00003560195,0.00072924723],"genre_scores_gemma":[0.9985948,0.000063211344,0.0009888271,0.000060512553,0.000013790514,0.00006573636,0.00015602761,0.000026115873,0.00003093607],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99847406,0.000089389425,0.0004162136,0.000471973,0.00008445629,0.00046389052],"domain_scores_gemma":[0.9995351,0.000046791643,0.00012139554,0.00019646519,0.0000010672258,0.00009919273],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001398512,0.0003211342,0.00048610326,0.00008811013,0.0001754125,0.000013954198,0.00015932872,0.00015929712,0.00010906982],"category_scores_gemma":[4.915139e-7,0.0002907185,0.00007942925,0.0001979777,0.00044422483,0.00011725519,0.000102058264,0.00016873826,0.00010706851],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006482374,0.00027764536,0.025502814,0.000016808786,0.000063880376,0.000015989857,0.00040793268,0.00008951227,0.97295505,0.00021550382,0.000006345,0.00038368136],"study_design_scores_gemma":[0.00384386,0.0002588602,0.11108274,0.000029469447,0.00018444391,0.00077334,0.002382134,0.00010707966,0.8793386,0.001071655,0.0002966755,0.0006311086],"about_ca_topic_score_codex":0.0007713897,"about_ca_topic_score_gemma":0.00042578366,"teacher_disagreement_score":0.093616426,"about_ca_system_score_codex":0.00023827612,"about_ca_system_score_gemma":0.000008424207,"threshold_uncertainty_score":0.9999545},"labels":[],"label_agreement":null},{"id":"W2146150988","doi":"10.1128/aem.01482-06","title":"Sources of Variation in the Ampicillin-Resistant <i>Escherichia coli</i> Concentration in the Feces of Organic Broiler Chickens","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Cancer Care Ontario","funders":"","keywords":"Ampicillin; Escherichia coli; Feces; Broiler; Biology; Antimicrobial; Population; Veterinary medicine; Microbiology; Amp resistance; Animal science; Antibiotics; Medicine; Environmental health","score_opus":0.0028745315325311937,"score_gpt":0.16861324126848062,"score_spread":0.16573870973594942,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146150988","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99904597,0.00035542643,0.000052727322,0.00005712337,0.000017421542,0.00020287119,0.000032707638,0.0000010839707,0.0002346469],"genre_scores_gemma":[0.9993122,0.00019136038,0.00007901252,0.00017533891,0.000028694769,0.000005614753,0.00019463745,0.000005265955,0.00000788011],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993788,0.00008431181,0.00023148568,0.00015962201,0.00003190246,0.00011386284],"domain_scores_gemma":[0.99971014,0.000029343382,0.00011778355,0.00013565831,0.0000019170031,0.0000051798484],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016969639,0.00008729335,0.00011873498,0.0000109127,0.000026549007,0.0000051448164,0.00012584335,0.00009910352,0.000007756576],"category_scores_gemma":[0.000002939008,0.000057257985,0.000019881589,0.000044801745,0.00025633414,0.0000020158354,0.000026215703,0.00005485043,8.1660636e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000060483973,0.000090429545,0.03516254,0.000009145858,0.0000066997522,3.7239684e-7,0.0002842112,0.000014802915,0.9640407,0.00026753373,0.000040735435,0.000022379636],"study_design_scores_gemma":[0.0005263152,0.00010235574,0.62906355,0.0000062548725,0.0000123743075,0.0000055901332,0.00086672866,0.0000033087333,0.36807132,0.00013032439,0.0011263738,0.000085507156],"about_ca_topic_score_codex":0.000059861595,"about_ca_topic_score_gemma":0.00017155673,"teacher_disagreement_score":0.5959694,"about_ca_system_score_codex":0.000008036072,"about_ca_system_score_gemma":0.000008392093,"threshold_uncertainty_score":0.23349129},"labels":[],"label_agreement":null},{"id":"W2146477624","doi":"10.1128/aem.67.6.2469-2475.2001","title":"Selection of Specific Endophytic Bacterial Genotypes by Plants in Response to Soil Contamination","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant responses to water stress","field":"Agricultural and Biological Sciences","cited_by":371,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"CARE Canada; National Research Council Canada; Biotechnology Research Institute; Fisheries and Oceans Canada","funders":"","keywords":"AlkB; Rhizosphere; Biology; Bacteria; Bioremediation; Contamination; Soil contamination; Phytoremediation; Botany; Soil microbiology; Monooxygenase; Environmental chemistry; Chemistry; Gene; Ecology; Escherichia coli; Cytochrome P450","score_opus":0.0047188205477427005,"score_gpt":0.15514126830978386,"score_spread":0.15042244776204117,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146477624","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993594,0.00004343256,0.0000015331567,0.00008237678,0.000037597736,0.00015251552,0.00025188402,0.0000076272245,0.000063596955],"genre_scores_gemma":[0.999235,0.0001558937,0.000015811805,0.000054172575,0.000028879764,0.000011196982,0.0003796375,7.8864406e-7,0.00011864644],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993923,0.00006925133,0.00013985972,0.00020603859,0.000025302492,0.00016728818],"domain_scores_gemma":[0.9998032,0.00010096832,0.000039135834,0.000021659209,9.63564e-7,0.000034077497],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009451729,0.00009089169,0.00013171874,0.000019483108,0.000036030215,0.000006618031,0.00006578584,0.00008046886,0.00022086283],"category_scores_gemma":[0.0000019979836,0.000045957433,0.000012757058,0.000048702168,0.000053847456,0.000021657326,0.00004173568,0.000045049033,0.000025139425],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00172306,0.000054794353,0.0062488182,8.399482e-7,0.0000033404383,0.0000026106818,0.000056924775,0.0000017909005,0.97507966,0.0000025189604,0.00013190447,0.016693713],"study_design_scores_gemma":[0.00035878172,0.00024871234,0.45200476,0.000004307231,0.0000018841725,0.000066920446,0.00010207369,0.0000016174046,0.51101965,0.000010024576,0.03607114,0.00011012904],"about_ca_topic_score_codex":0.000062787294,"about_ca_topic_score_gemma":0.00023159957,"teacher_disagreement_score":0.46406004,"about_ca_system_score_codex":0.00003598227,"about_ca_system_score_gemma":0.000001241179,"threshold_uncertainty_score":0.2418293},"labels":[],"label_agreement":null},{"id":"W2146525666","doi":"10.1128/aem.72.3.1925-1931.2006","title":"Supplementation of the Diet with High-Viscosity Beta-Glucan Results in Enrichment for Lactobacilli in the Rat Cecum","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Food composition and properties","field":"Nursing","cited_by":173,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; Lactobacillus; Food science; Lactobacillus acidophilus; Cecum; 16S ribosomal RNA; Glucan; Beta-glucan; Polysaccharide; Biochemistry; Microbiology; Gut flora; Temperature gradient gel electrophoresis; Probiotic; Molecular biology; Bacteria; Gene; Fermentation","score_opus":0.006397461797591129,"score_gpt":0.18848714936892327,"score_spread":0.18208968757133215,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146525666","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967749,0.0000691333,0.0000067934297,0.0020766738,0.000060791786,0.0005494461,0.00018870606,0.0000031570876,0.0002703643],"genre_scores_gemma":[0.9988869,0.000009063395,0.000137831,0.00039336618,0.000016969558,0.00005568344,0.00047879186,0.0000053844,0.000016047994],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994059,0.00006670269,0.00018990187,0.00016256733,0.00003242372,0.00014250007],"domain_scores_gemma":[0.9997624,0.000051476753,0.000067052635,0.00011085782,0.0000010861322,0.0000070870183],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000117740696,0.000092992166,0.00011484599,0.000024442777,0.00008067901,0.000007462844,0.0000869422,0.000042326978,0.000007755647],"category_scores_gemma":[4.4891192e-7,0.000051530747,0.000018623497,0.00004137925,0.0001616919,0.00001963236,0.000031453492,0.000070126334,0.0000011973214],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0036951983,0.00027905588,0.011335458,0.00002218134,0.000009546221,3.7285713e-7,0.0013669578,0.0002754961,0.9806625,0.0004637555,0.00082253705,0.0010669106],"study_design_scores_gemma":[0.008646121,0.0027926313,0.26414588,0.000032429805,0.000055587836,0.000017485167,0.0038749257,0.00001349135,0.69926137,0.0009168377,0.01992822,0.00031503724],"about_ca_topic_score_codex":0.00036782658,"about_ca_topic_score_gemma":0.00093007454,"teacher_disagreement_score":0.2814012,"about_ca_system_score_codex":0.000049146005,"about_ca_system_score_gemma":0.0000020800471,"threshold_uncertainty_score":0.2101363},"labels":[],"label_agreement":null},{"id":"W2146530830","doi":"10.1128/aem.72.1.506-515.2006","title":"Protease Inhibitors Fail To Prevent Pore Formation by the Activated <i>Bacillus thuringiensis</i> Toxin Cry1Aa in Insect Brush Border Membrane Vesicles","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect Resistance and Genetics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Proteases; Biochemistry; Vesicle; EGTA; Protease; Manduca sexta; Brush border; Bacillus thuringiensis; Chemistry; Serine protease; Divalent; Biophysics; Biology; Membrane; Calcium; Enzyme; Bacteria; Insect","score_opus":0.002379869873830678,"score_gpt":0.1712022038082192,"score_spread":0.16882233393438853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146530830","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983228,0.00050812785,0.00004599449,0.00022067396,0.00003021156,0.0005552832,0.00008669318,0.0000070999567,0.00022313133],"genre_scores_gemma":[0.99781364,0.0001405656,0.000086869906,0.00063328206,0.00008877288,0.00008652196,0.0009251704,0.000016852451,0.0002083266],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999115,0.000041980344,0.00021839989,0.0003083098,0.00004026084,0.00027606759],"domain_scores_gemma":[0.9997075,0.000007337673,0.000063291496,0.00018107829,0.0000030264412,0.000037775764],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008849815,0.00018073645,0.00013039405,0.000029211471,0.000097717806,0.000014240166,0.00010227882,0.00015677277,0.000012129784],"category_scores_gemma":[0.000002493293,0.0001438433,0.000033369317,0.00005423241,0.00012245505,0.000004673885,0.000114660004,0.00009242091,0.000007723533],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000889842,0.00008486092,0.00026643267,0.00001052313,0.000011032715,0.0000011432021,0.00011360491,0.00011001508,0.9954486,0.0000074581467,0.0019573346,0.0019000224],"study_design_scores_gemma":[0.00048409222,0.000114891955,0.001091392,0.0000057706175,0.0000071334166,0.000023326633,0.0002170678,0.0000018743689,0.94339436,0.000024826897,0.054454986,0.00018028817],"about_ca_topic_score_codex":0.000066674715,"about_ca_topic_score_gemma":0.00014728357,"teacher_disagreement_score":0.05249765,"about_ca_system_score_codex":0.000034541536,"about_ca_system_score_gemma":0.000010520665,"threshold_uncertainty_score":0.586576},"labels":[],"label_agreement":null},{"id":"W2146581807","doi":"10.1128/aem.02186-09","title":"Adaptation of the Highly Productive T7 Expression System to <i>Streptomyces lividans</i>","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"","keywords":"T7 RNA polymerase; Biology; Streptomyces; Streptomycetaceae; Actinomycetales; Expression vector; Adaptation (eye); Gene; Gene expression; Genetics; Bacteria; Molecular biology; Bacteriophage; Microbiology; Escherichia coli; Recombinant DNA","score_opus":0.002485648857885867,"score_gpt":0.156636391244453,"score_spread":0.15415074238656712,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146581807","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988946,0.00024110625,0.00009896492,0.00021348993,0.00009507142,0.0002606293,0.00005346517,0.000007044485,0.00013567624],"genre_scores_gemma":[0.99895984,0.00007345761,0.0005343153,0.00020657999,0.000071489674,0.0000117324735,0.00008240654,0.0000066696794,0.000053493128],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99937105,0.000024584533,0.0001427952,0.00029960126,0.000023282671,0.00013865501],"domain_scores_gemma":[0.9996689,0.0000028764096,0.00007408013,0.00022232365,0.0000035559879,0.0000282572],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000045202538,0.000114593495,0.00011878363,0.000018085204,0.000060138096,0.0000038918015,0.00013362711,0.00017393199,0.0000026546466],"category_scores_gemma":[0.0000023588602,0.00008110164,0.000030107301,0.000033293967,0.00013438413,0.0000011198314,0.00013627327,0.00005003912,0.0000035243506],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005233263,0.00003897123,0.0002113706,0.000005563213,0.000009034261,1.2499233e-7,0.000061368584,0.000029707648,0.99467736,0.00009976413,0.000108290114,0.0047060973],"study_design_scores_gemma":[0.00020851196,0.00029003943,0.004272722,0.0000089202495,0.00000957317,0.000019912182,0.00033753432,0.0000016900063,0.9811193,0.000014489873,0.013619857,0.00009745859],"about_ca_topic_score_codex":0.0000037770799,"about_ca_topic_score_gemma":0.0000023276395,"teacher_disagreement_score":0.013558084,"about_ca_system_score_codex":0.000010415734,"about_ca_system_score_gemma":0.0000070259052,"threshold_uncertainty_score":0.3307229},"labels":[],"label_agreement":null},{"id":"W2146609155","doi":"10.1128/aem.00178-09","title":"High-Level Genetic Diversity but No Population Structure Inferred from Nuclear and Mitochondrial Markers of the Peritrichous Ciliate<i>Carchesium polypinum</i>in the Grand River Basin (North America)","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Canada","keywords":"Ciliate; Genetic diversity; Biology; Population; Ecology; Geography; Evolutionary biology","score_opus":0.0045984090313017,"score_gpt":0.15381377722300354,"score_spread":0.14921536819170184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146609155","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99893963,0.000035209585,0.0000047814797,0.0001415896,0.000090177535,0.00030056085,0.00041893928,0.0000052076907,0.00006389404],"genre_scores_gemma":[0.9978533,0.00008266068,0.0004740767,0.0012878878,0.000027488302,0.0000018917112,0.0002518538,0.000006229644,0.000014649595],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99898905,0.0002655597,0.00018158961,0.00029499774,0.000047390888,0.00022139632],"domain_scores_gemma":[0.99951947,0.00008625774,0.00010599683,0.00025345513,8.9884367e-7,0.000033895834],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000047230325,0.00017469535,0.00023730934,0.000020323758,0.00036395105,0.000006686335,0.00033154132,0.00016722066,0.000472635],"category_scores_gemma":[0.000005045083,0.00012331108,0.000040777773,0.00006943677,0.0009682671,0.000038007925,0.0005402484,0.00027785706,0.000016929138],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035331066,0.00009869574,0.19333561,0.000002955158,0.000019783321,0.0000015966153,0.0016278428,0.00012341214,0.8013204,0.000009702003,0.0005575853,0.0025491489],"study_design_scores_gemma":[0.0007524527,0.00013077723,0.9967171,0.0000017011569,0.000029972896,0.00001113203,0.00017989177,0.0000091185975,0.000392901,0.0007812171,0.0008588861,0.00013487993],"about_ca_topic_score_codex":0.0032564392,"about_ca_topic_score_gemma":0.00091673346,"teacher_disagreement_score":0.80338144,"about_ca_system_score_codex":0.000053023417,"about_ca_system_score_gemma":0.0000026036348,"threshold_uncertainty_score":0.5175022},"labels":[],"label_agreement":null},{"id":"W2147140573","doi":"10.1128/aem.03742-12","title":"Genetic Analysis of Capsular Polysaccharide Synthesis Gene Clusters from All Serotypes of Streptococcus suis: Potential Mechanisms for Generation of Capsular Variation","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":114,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Biology; Gene cluster; Genetics; Streptococcus suis; Gene; Aroa; Serotype; Locus (genetics); Horizontal gene transfer; Homology (biology); Microbiology; Phylogenetics; Escherichia coli; Virulence","score_opus":0.009384154862111626,"score_gpt":0.20211769747761546,"score_spread":0.19273354261550382,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147140573","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9857949,0.00013844183,0.012561426,0.000018467681,0.00003735398,0.00085684675,0.0005820962,0.0000054543075,0.0000050128087],"genre_scores_gemma":[0.99310094,0.00008820651,0.0057319584,0.00003419113,0.000023455463,0.0001980226,0.0008031228,0.000012236976,0.000007872989],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99915934,0.000025128973,0.00037200766,0.00026845184,0.000043311607,0.00013174283],"domain_scores_gemma":[0.99949175,0.00003977151,0.00022235748,0.00018787156,0.000013026247,0.00004525099],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000041747946,0.00013984299,0.00044258413,0.00013899105,0.000031641674,0.0000030702615,0.000039158345,0.00014210634,0.00032751716],"category_scores_gemma":[0.0000040904856,0.00012203324,0.00013649545,0.000070029266,0.00009334838,0.000022247114,0.000033458826,0.000032092146,0.0000031371885],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004166901,0.00023062003,0.010644363,0.00001725797,0.00221227,4.673235e-7,0.00010388738,0.0007967602,0.98477656,0.000031552565,0.000005991605,0.0011385774],"study_design_scores_gemma":[0.0009461043,0.00021197734,0.16136454,0.000005848604,0.003149936,0.00000327974,0.00010723588,0.003014685,0.83096504,0.00013586516,0.0000051610905,0.00009030184],"about_ca_topic_score_codex":0.0011610979,"about_ca_topic_score_gemma":0.000016730175,"teacher_disagreement_score":0.15381153,"about_ca_system_score_codex":0.000037448648,"about_ca_system_score_gemma":0.000008633359,"threshold_uncertainty_score":0.49763712},"labels":[],"label_agreement":null},{"id":"W2147224983","doi":"10.1128/aem.03277-12","title":"Modulation of Porcine β-Defensins 1 and 2 upon Individual and Combined Fusarium Toxin Exposure in a Swine Jejunal Epithelial Cell Line","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"University of Hong Kong","keywords":"Toxin; Fusarium; Antimicrobial peptides; Antimicrobial; Microbiology; Mycotoxin; Biology; Innate immune system; Zearalenone; Fumonisin B1; Fumonisin; Immune system; Defensin; Trichothecene; Food science; Immunology","score_opus":0.00493027028894894,"score_gpt":0.16128111431363695,"score_spread":0.15635084402468802,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147224983","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982144,0.00083529705,0.000019673473,0.0001544832,0.000069810725,0.00033074018,0.00025787507,0.000011405707,0.00010629729],"genre_scores_gemma":[0.99825567,0.00035134578,0.00018692524,0.00018235265,0.000020752223,0.000011634058,0.00078613474,0.000014977478,0.0001902297],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990248,0.000053378277,0.00030870503,0.00033017297,0.000012884413,0.00027002627],"domain_scores_gemma":[0.9996822,0.000061706385,0.00012184575,0.0001047795,0.000003649624,0.000025856603],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009313931,0.00021596145,0.0003811605,0.000097168995,0.000079268,0.00000963075,0.00005906158,0.00028318,0.00016049696],"category_scores_gemma":[0.000002422777,0.00019219377,0.000025903726,0.000034538672,0.0005194225,0.000067901965,0.00018707215,0.00020073054,0.000019905348],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013814386,0.00016218548,0.009892308,0.0000238921,0.000037191166,0.0000010309896,0.0004429698,0.000007579761,0.98648095,0.00012773462,0.00007384782,0.0026121938],"study_design_scores_gemma":[0.005648003,0.0008545314,0.2442448,0.000021171987,0.000055780474,0.00015298346,0.001276255,0.000021486476,0.7461756,0.00038789236,0.00077712326,0.00038438066],"about_ca_topic_score_codex":0.00017150758,"about_ca_topic_score_gemma":0.0000202496,"teacher_disagreement_score":0.24030532,"about_ca_system_score_codex":0.000012934542,"about_ca_system_score_gemma":0.0000061017404,"threshold_uncertainty_score":0.78374344},"labels":[],"label_agreement":null},{"id":"W2147267978","doi":"10.1128/aem.67.10.4488-4494.2001","title":"Differential Effects of pH on the Pore-Forming Properties of <i>Bacillus thuringiensis</i> Insecticidal Crystal Toxins","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect Resistance and Genetics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute; Université de Montréal","funders":"","keywords":"Bacillus thuringiensis; Cry1Ac; Manduca sexta; Manduca; Midgut; Toxin; Brush border; Biophysics; Vesicle; Chemistry; Chromatography; Biology; Biochemistry; Membrane; Botany; Insect; Bacteria; Larva","score_opus":0.004003301568358161,"score_gpt":0.15573853194898413,"score_spread":0.15173523038062597,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147267978","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998778,0.0004513233,0.00005150695,0.000020778381,0.000059261758,0.00020257143,0.000020520005,0.000002850646,0.00041322608],"genre_scores_gemma":[0.99916244,0.00042958025,0.00002134016,0.00016888393,0.00005652778,0.000014047827,0.000055975237,0.0000124222815,0.00007880784],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99937135,0.000024949079,0.00016888566,0.00020640313,0.000038675822,0.00018975096],"domain_scores_gemma":[0.9996895,0.000014882396,0.00008244561,0.00018559885,0.0000035823264,0.000023954315],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003094807,0.00014472891,0.00016472401,0.000020888396,0.00006892972,0.0000033307513,0.00010306517,0.00011931599,0.000012916186],"category_scores_gemma":[0.000005027837,0.000097947035,0.00005495851,0.000022224098,0.0003648795,0.0000013026716,0.00011884605,0.0000694476,0.0000015759035],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020105012,0.00010306769,0.00063429336,0.000036160567,0.000052818046,0.0000014752172,0.00012986439,0.0000076239876,0.99801236,0.00008635659,0.000031182743,0.0007037285],"study_design_scores_gemma":[0.0004652186,0.00038353374,0.0019592405,0.00001438601,0.000021654276,0.00003521332,0.00017089021,0.0000013739844,0.99530655,0.000022754031,0.0015057179,0.00011348901],"about_ca_topic_score_codex":0.0000066577827,"about_ca_topic_score_gemma":0.000008233886,"teacher_disagreement_score":0.0027058504,"about_ca_system_score_codex":0.000008166498,"about_ca_system_score_gemma":0.000008279528,"threshold_uncertainty_score":0.39941642},"labels":[],"label_agreement":null},{"id":"W2147297292","doi":"10.1128/aem.69.6.3435-3447.2003","title":"Use of PCR for Direct Detection of <i>Campylobacter</i> Species in Bovine Feces","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":151,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Health Canada","keywords":"Biology; Feces; Campylobacter; Campylobacter jejuni; Microbiology; Isolation (microbiology); Campylobacter fetus; Polymerase chain reaction; DNA extraction; Arcobacter; Multiplex polymerase chain reaction; Bacteria; Genetics","score_opus":0.018673026686099936,"score_gpt":0.17618614338438848,"score_spread":0.15751311669828855,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147297292","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99908555,0.00021440908,0.000008346043,0.000026347056,0.000050130442,0.00020230048,0.00016735743,0.0000057760594,0.0002398131],"genre_scores_gemma":[0.99930197,0.00029583328,0.00010293056,0.00009481306,0.000019063875,0.000017092047,0.000114983,0.0000010799673,0.000052248266],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992421,0.00006413324,0.0002642929,0.00022753506,0.00001653161,0.00018537315],"domain_scores_gemma":[0.99947786,0.00033469748,0.000118345924,0.000040537714,0.0000024980015,0.000026059359],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014201278,0.00011227548,0.0002933696,0.000014063222,0.000032098385,0.0000028806787,0.000056615365,0.00012253685,0.000058694153],"category_scores_gemma":[0.000017101685,0.000052800562,0.000052425774,0.00005580303,0.00020449655,0.00002801098,0.000030272655,0.000045288252,0.0000016884372],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007367156,0.0000690666,0.05722566,0.0000067658,0.000009826404,1.4568974e-7,0.00002293597,0.0000020088307,0.93743354,0.00015894919,0.000017691493,0.0049797334],"study_design_scores_gemma":[0.00028882828,0.0003819948,0.31361803,0.0000054914176,0.000012898848,0.0000127034145,0.00022826609,0.0000019316974,0.6500258,0.0002475749,0.03504061,0.00013591383],"about_ca_topic_score_codex":0.000060515526,"about_ca_topic_score_gemma":0.0001388057,"teacher_disagreement_score":0.2874078,"about_ca_system_score_codex":0.000013627132,"about_ca_system_score_gemma":0.0000012235424,"threshold_uncertainty_score":0.21531443},"labels":[],"label_agreement":null},{"id":"W2147324358","doi":"10.1128/aem.05909-11","title":"Intergenic Sequence Comparison of Escherichia coli Isolates Reveals Lifestyle Adaptations but Not Host Specificity","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":70,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Environment and Climate Change Canada; Provincial Laboratory of Public Health; University of Alberta; University of Calgary","funders":"","keywords":"Biology; Virulence; Intergenic region; Escherichia coli; Phylogenetic tree; Host (biology); Genetics; Gene; Microbiology; Phylogenetics; Fimbria; Host adaptation; Genome","score_opus":0.028271238422073606,"score_gpt":0.2511644575903834,"score_spread":0.22289321916830981,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147324358","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99776703,0.00070793607,0.00019357636,0.000020486,0.000045205874,0.0002189665,0.00016115593,0.0000073917913,0.000878258],"genre_scores_gemma":[0.9968071,0.00083403644,0.0018045366,0.00012935147,0.0000360161,0.000036927126,0.00014882232,0.00001571546,0.00018748484],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990492,0.000053705546,0.00026493837,0.00034459258,0.000031672724,0.00025588056],"domain_scores_gemma":[0.9995795,0.000023805564,0.00011402484,0.00020936421,0.000008069166,0.00006522977],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009748617,0.00016873519,0.00024723014,0.000026050424,0.00009616714,0.0000042027254,0.00016489661,0.00014028023,0.00007173553],"category_scores_gemma":[0.00001411788,0.00016012261,0.000049339345,0.000039603943,0.00056899537,0.0000032689895,0.00031952394,0.00012445371,0.000015458081],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011325202,0.00015138493,0.015263381,0.00001238668,0.0000846138,5.251957e-7,0.00036833063,0.0000017901335,0.98347455,0.00012893189,0.00018504885,0.0002157952],"study_design_scores_gemma":[0.00034919337,0.0003870662,0.04442144,0.0000056124068,0.000021694985,0.0000071239833,0.0014894019,0.000017262746,0.95018435,0.00003407178,0.0028836783,0.00019909459],"about_ca_topic_score_codex":0.00003733264,"about_ca_topic_score_gemma":0.000034121225,"teacher_disagreement_score":0.0332902,"about_ca_system_score_codex":0.000017135011,"about_ca_system_score_gemma":0.00001465886,"threshold_uncertainty_score":0.6529611},"labels":[],"label_agreement":null},{"id":"W2147448256","doi":"10.1128/aem.69.2.769-778.2003","title":"Monitoring Gene Expression in Mixed Microbial Communities by Using DNA Microarrays","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gene expression and cancer classification","field":"Biochemistry, Genetics and Molecular Biology","cited_by":147,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University; University of Toronto","funders":"University of Toronto; University Health Network","keywords":"DNA microarray; Gene; Biology; Gene expression; Bacteria; Microarray; Activated sludge; Microbiology; DNA; Molecular biology; Biochemistry; Genetics; Sewage treatment","score_opus":0.009711069567190962,"score_gpt":0.2018704260397436,"score_spread":0.19215935647255264,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147448256","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975899,0.0015540062,0.00039298405,0.000009399258,0.00013508608,0.00012927355,0.000039415616,0.000005185381,0.00014476893],"genre_scores_gemma":[0.9973883,0.00075638335,0.0012613004,0.000097796394,0.000040458242,0.000021862204,0.00033407746,0.000019525762,0.00008031819],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999214,0.00008479039,0.00017684187,0.00027459615,0.000022614351,0.00022719215],"domain_scores_gemma":[0.99968004,0.000006368868,0.000062448256,0.00020294313,0.0000019363417,0.000046245106],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000834764,0.00016273587,0.000135272,0.000039937888,0.00011160595,0.000011204731,0.000100300575,0.0001927705,0.000024978583],"category_scores_gemma":[0.0000015013899,0.00016447227,0.000027588145,0.000029202876,0.00015818916,0.0000032288374,0.00009212938,0.0000976128,0.000004083269],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030072182,0.000063214786,0.006719726,0.000004484357,0.0000075437633,2.9988513e-7,0.00010414643,0.000015622421,0.9922961,0.0000037093077,0.0002869962,0.00046811273],"study_design_scores_gemma":[0.00069719076,0.000031529016,0.0010392294,0.000009805686,0.000004865422,0.000030122403,0.0013043279,0.0000013978336,0.97905624,0.000009858912,0.01763419,0.00018125723],"about_ca_topic_score_codex":0.000010413596,"about_ca_topic_score_gemma":0.000003901596,"teacher_disagreement_score":0.017347196,"about_ca_system_score_codex":0.000034188906,"about_ca_system_score_gemma":0.0000111431755,"threshold_uncertainty_score":0.67069846},"labels":[],"label_agreement":null},{"id":"W2147660082","doi":"10.1128/aem.01376-13","title":"Quantification of Endospore-Forming Firmicutes by Quantitative PCR with the Functional Gene<i>spo0A</i>","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Directorate for Biological Sciences; Independent Electricity System Operator; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; École Polytechnique Fédérale de Lausanne","keywords":"Firmicutes; Biology; Primer (cosmetics); Endospore; Microbiology; 16S ribosomal RNA; Paenibacillus; Pyrosequencing; Microbial ecology; Bacteria; Food science; Gene; Genetics; Spore; Chemistry","score_opus":0.0070332813018808525,"score_gpt":0.16429139292552478,"score_spread":0.15725811162364392,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147660082","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986551,0.00017111427,0.00025350755,0.00019185286,0.000018774046,0.00031674313,0.000057113084,0.000009805168,0.00032601928],"genre_scores_gemma":[0.9970149,0.00004742318,0.0020394656,0.00014816008,0.00000811587,0.000056009223,0.0003620747,0.000011262295,0.00031262916],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99931276,0.00002171783,0.00014456254,0.00026945036,0.000056894096,0.00019463143],"domain_scores_gemma":[0.9996822,0.000050108058,0.00009742102,0.0001319308,0.0000010764153,0.000037292415],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000057557052,0.00015216334,0.00013462317,0.000012892232,0.00013957618,0.000009883814,0.00009711726,0.00005583384,0.0007234921],"category_scores_gemma":[4.6109025e-7,0.00009050634,0.000027213957,0.00004378562,0.000654976,0.0000803772,0.00008916622,0.000064081105,0.0002823844],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037903297,0.00006609559,0.011733836,0.0000017972675,0.00003630477,3.7030935e-7,0.0001797159,0.000038050468,0.9853208,0.00009052708,0.0016282606,0.00086630275],"study_design_scores_gemma":[0.0007327398,0.00019743253,0.042716023,0.0000024120004,0.000044617194,0.00006297919,0.0011509231,0.00004423841,0.94952285,0.00014476936,0.0051770504,0.00020398945],"about_ca_topic_score_codex":0.00015532946,"about_ca_topic_score_gemma":0.000009795574,"teacher_disagreement_score":0.03579801,"about_ca_system_score_codex":0.00003624284,"about_ca_system_score_gemma":0.0000020458378,"threshold_uncertainty_score":0.7921731},"labels":[],"label_agreement":null},{"id":"W2147688509","doi":"10.1128/aem.70.11.6603-6610.2004","title":"Multiplex Nucleic Acid Sequence-Based Amplification for Simultaneous Detection of Several Enteric Viruses in Model Ready-To-Eat Foods","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Agricultural Research Service; U.S. Department of Agriculture","keywords":"NASBA; Amplicon; Biology; Multiplex; Virology; Norwalk virus; Nucleic acid; Virus; Multiplex polymerase chain reaction; Food microbiology; Reverse transcriptase; Reverse transcription polymerase chain reaction; Primer (cosmetics); Polymerase chain reaction; Microbiology; Molecular biology; RNA; Norovirus; Bacteria; Gene; Chemistry; Genetics; Gene expression","score_opus":0.03406803712556489,"score_gpt":0.28251547164960605,"score_spread":0.24844743452404117,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147688509","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.964756,0.000045462137,0.034034822,0.00016722154,0.000020854759,0.00073854084,0.00021148165,0.000014481726,0.000011143772],"genre_scores_gemma":[0.99165744,0.000065522596,0.006696014,0.001047673,0.000019898958,0.00013117716,0.00035662824,0.000016951428,0.0000087166],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990021,0.000026504455,0.00028700667,0.00032591567,0.00003181529,0.00032662987],"domain_scores_gemma":[0.999674,0.000030488172,0.000060502716,0.00013343206,0.000004974546,0.000096601056],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000099561985,0.00014025596,0.00030594075,0.00010652208,0.000041994237,0.000002805303,0.00005876144,0.00012628041,0.000007721282],"category_scores_gemma":[0.000030343312,0.00013067394,0.000044717446,0.000044503093,0.00021169613,0.000021204447,0.000038845545,0.000107974716,0.000010453334],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013283325,0.00016047752,0.0015185676,0.000041732546,0.000014624108,0.0000033219433,0.000069480455,0.013959972,0.979108,0.000017065617,0.0000049187047,0.0037735011],"study_design_scores_gemma":[0.0141266845,0.0053363577,0.013229544,0.00010040893,0.00005703411,0.00027352423,0.00038097618,0.043898262,0.920325,0.00060876994,0.0012266741,0.00043675682],"about_ca_topic_score_codex":0.00007353667,"about_ca_topic_score_gemma":0.000055391196,"teacher_disagreement_score":0.058783,"about_ca_system_score_codex":0.00017866069,"about_ca_system_score_gemma":0.000016724327,"threshold_uncertainty_score":0.53287286},"labels":[],"label_agreement":null},{"id":"W2148002365","doi":"10.1128/aem.68.4.1576-1584.2002","title":"Phylogenetic Diversity of Marine Cyanophage Isolates and Natural Virus Communities as Revealed by Sequences of Viral Capsid Assembly Protein Gene g20","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":168,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of British Columbia; University of Georgia; Woods Hole Oceanographic Institution; National Science Foundation","keywords":"Biology; Phylogenetic tree; Phylogenetic diversity; Capsid; Genetic diversity; Phylogenetics; Synechococcus; Gene; Genetics; Cyanobacteria; Bacteria; Population","score_opus":0.005230521825158909,"score_gpt":0.17159224482269272,"score_spread":0.16636172299753382,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148002365","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99853796,0.00056206563,0.0000027503058,0.000030137995,0.000029901803,0.00022448634,0.00023184251,0.000007469632,0.00037336073],"genre_scores_gemma":[0.9985188,0.00052198395,0.00031993355,0.000116356285,0.0000065866006,0.000008456022,0.00010675598,0.000009303699,0.00039176983],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99930483,0.00004767289,0.00021239104,0.00021195401,0.000026395439,0.00019673644],"domain_scores_gemma":[0.9996459,0.000031763964,0.0001347684,0.0001398595,0.0000011776988,0.000046549445],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00004891058,0.00017152714,0.00024305913,0.000023660508,0.00018598532,0.0000072906373,0.00015397403,0.000095175856,0.0012238683],"category_scores_gemma":[0.0000011391112,0.00015898391,0.00003634884,0.000030633746,0.0009481301,0.000069922186,0.0008829463,0.00013538149,0.00003720373],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030178813,0.000115804796,0.010688013,0.000013336074,0.000023147291,0.0000011443007,0.00048660135,0.0000021781161,0.98744667,0.0000067006017,0.00008826152,0.0010979439],"study_design_scores_gemma":[0.00051805296,0.00024853618,0.058762323,0.000007904091,0.00003301508,0.00008779966,0.0004340229,0.000014982437,0.9390934,0.0000666419,0.0005297827,0.00020351358],"about_ca_topic_score_codex":0.0022094825,"about_ca_topic_score_gemma":0.0001431572,"teacher_disagreement_score":0.048353262,"about_ca_system_score_codex":0.00004049412,"about_ca_system_score_gemma":0.0000010276975,"threshold_uncertainty_score":0.99968916},"labels":[],"label_agreement":null},{"id":"W2148278365","doi":"10.1128/aem.02322-06","title":"Glutathione Reductase from <i>Lactobacillus sanfranciscensis</i> DSM20451 <sup>T</sup> : Contribution to Oxygen Tolerance and Thiol Exchange Reactions in Wheat Sourdoughs","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Polyamine Metabolism and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":109,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Bundesministerium für Wirtschaft und Technologie; Forschungskreis der Ernährungsindustrie; Allianz Industrie Forschung; Canada Research Chairs; Queensland University of Technology","keywords":"Fermentation; Lactobacillus reuteri; Thiol; Biochemistry; Biology; Glutathione; Chemistry; Lactobacillus; Enzyme","score_opus":0.0036038754861989764,"score_gpt":0.19333162520373057,"score_spread":0.1897277497175316,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148278365","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945045,0.002619906,0.001289688,0.0003025519,0.000047973117,0.00042866624,0.0006522631,0.000011597413,0.00014283795],"genre_scores_gemma":[0.99507254,0.001121726,0.0006467688,0.0011571792,0.00020113072,0.000063351894,0.0016357505,0.000017836472,0.00008373244],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987633,0.000029878012,0.00026857646,0.0005413803,0.000034541277,0.00036230628],"domain_scores_gemma":[0.99952567,0.000025481788,0.000057276244,0.00024617184,0.0000047515027,0.00014062459],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016345421,0.00020922357,0.00022876699,0.00005341998,0.00012098215,0.000010891218,0.00008785375,0.00022255477,0.00002358664],"category_scores_gemma":[0.000009179949,0.0002103398,0.000032131346,0.000068776855,0.00017829561,0.0000057908856,0.00015189873,0.00012830533,0.000028334296],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012299223,0.00008326295,0.0008700244,0.0000042576335,0.000017466324,0.0000020263171,0.00021210579,0.00002695162,0.9925766,0.00008026714,0.00034804648,0.0056560216],"study_design_scores_gemma":[0.002560388,0.0001321777,0.040592812,0.0000148783465,0.000045564306,0.000105064515,0.0009241891,0.000027354774,0.6297408,0.00022721449,0.32507914,0.00055044383],"about_ca_topic_score_codex":0.000092496135,"about_ca_topic_score_gemma":0.00006730507,"teacher_disagreement_score":0.3628358,"about_ca_system_score_codex":0.000028479733,"about_ca_system_score_gemma":0.000008696315,"threshold_uncertainty_score":0.85774076},"labels":[],"label_agreement":null},{"id":"W2148378844","doi":"10.1128/aem.02924-08","title":"Mutations in Domain I Interhelical Loops Affect the Rate of Pore Formation by the <i>Bacillus thuringiensis</i> Cry1Aa Toxin in Insect Midgut Brush Border Membrane Vesicles","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect Resistance and Genetics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Université de Montréal","funders":"","keywords":"Mutant; Bacillus thuringiensis; Manduca sexta; Biochemistry; Midgut; Brush border; Biophysics; Biology; Cysteine; Vesicle; Cell biology; Membrane; Insect; Bacteria","score_opus":0.00327804268164477,"score_gpt":0.19349186504828084,"score_spread":0.19021382236663606,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148378844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979749,0.00095749536,0.00008409065,0.00043033206,0.000018849874,0.000270351,0.00005455874,0.0000024386145,0.00020703078],"genre_scores_gemma":[0.9978882,0.00051831227,0.00005980648,0.001019551,0.000023292348,0.000019746234,0.00043562162,0.0000071829118,0.000028266162],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992572,0.00008881394,0.00022767532,0.00020188674,0.000024752377,0.0001996582],"domain_scores_gemma":[0.9997135,0.000028966733,0.0000682519,0.0001688848,0.0000023879334,0.00001801528],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018390272,0.00013246719,0.00013750506,0.00002714602,0.000061414146,0.000007701922,0.00012543981,0.00012503495,0.00000816753],"category_scores_gemma":[0.0000044691665,0.00008931156,0.000035933874,0.000056973648,0.00025567992,0.0000038475564,0.000058042064,0.00011138602,0.0000022083304],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009166039,0.000060091777,0.00039590837,0.0000062939093,0.000010002363,0.0000010406185,0.0004019225,0.000068016,0.9961961,0.000057386038,0.0001974365,0.0025141207],"study_design_scores_gemma":[0.0010152194,0.00021706539,0.015041956,0.000009318068,0.000010106551,0.00004862311,0.00083800085,0.000011733976,0.9752762,0.00030078483,0.007079979,0.00015102782],"about_ca_topic_score_codex":0.00001652183,"about_ca_topic_score_gemma":0.00017903316,"teacher_disagreement_score":0.020919936,"about_ca_system_score_codex":0.000018458572,"about_ca_system_score_gemma":0.000008431176,"threshold_uncertainty_score":0.36420196},"labels":[],"label_agreement":null},{"id":"W2148417600","doi":"10.1128/aem.01588-09","title":"Diversity of <i>nirK</i> Denitrifying Genes and Transcripts in an Agricultural Soil","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; University of Guelph; University of New Brunswick","funders":"","keywords":"Denitrifying bacteria; Denitrification; Biology; Microbial population biology; Temperature gradient gel electrophoresis; Community structure; Agronomy; Ecology; Bacteria; Nitrogen; Chemistry","score_opus":0.00721297399332445,"score_gpt":0.16704525308754267,"score_spread":0.1598322790942182,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148417600","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993371,0.00026037951,0.0000024291164,0.000032981356,0.0000130904045,0.0001249378,0.000015185888,0.000007679324,0.00020625557],"genre_scores_gemma":[0.99924695,0.00014741882,0.000422836,0.00009685921,0.000007799982,0.000001937769,0.000050156115,0.0000034165623,0.000022604361],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993664,0.000022662374,0.00012266013,0.00026292691,0.00003335863,0.00019201546],"domain_scores_gemma":[0.999834,0.0000074428635,0.000032927088,0.000068516856,2.5708644e-7,0.00005682891],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000042859647,0.00013301907,0.00016224124,0.000020725487,0.00014929993,0.0000043230293,0.00007822168,0.00007903499,0.000052644144],"category_scores_gemma":[1.5608629e-7,0.00010515341,0.000022033339,0.00003507685,0.00023254653,0.000084015395,0.0001779343,0.00005783524,0.000007750119],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003166129,0.00010019464,0.12180287,0.0000018179501,0.000004989769,0.000003624673,0.0007228464,0.000014017621,0.87335306,0.000010273273,0.000005144642,0.003949482],"study_design_scores_gemma":[0.0011539514,0.00022196959,0.6381271,0.0000029581763,0.000026955917,0.000070028254,0.0007024851,0.000007363693,0.3591863,0.00018683192,0.00011873056,0.00019537208],"about_ca_topic_score_codex":0.000084419815,"about_ca_topic_score_gemma":0.00007152113,"teacher_disagreement_score":0.5163242,"about_ca_system_score_codex":0.00003326745,"about_ca_system_score_gemma":6.739896e-7,"threshold_uncertainty_score":0.42880318},"labels":[],"label_agreement":null},{"id":"W2148622609","doi":"10.1128/aem.69.3.1614-1622.2003","title":"Respiration of <sup>13</sup> C-Labeled Substrates Added to Soil in the Field and Subsequent 16S rRNA Gene Analysis of <sup>13</sup> C-Labeled Soil DNA","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":219,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"AstraZeneca (Canada)","funders":"National Science Foundation","keywords":"Respiration; Chemistry; Soil respiration; Biodegradation; Environmental chemistry; Soil test; Soil microbiology; Organic matter; Soil water; Chromatography; Botany; Biology; Soil science; Environmental science; Organic chemistry","score_opus":0.0077274569216381405,"score_gpt":0.20196205671540093,"score_spread":0.19423459979376279,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148622609","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983969,0.00016150616,0.000023976634,0.00019894654,0.000018325203,0.00045438623,0.00010566684,0.000008753701,0.00063158385],"genre_scores_gemma":[0.99754304,0.00023472712,0.00017178219,0.0015490492,0.000012855654,0.000045812623,0.00037634207,0.000014819505,0.00005156817],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978172,0.00051447615,0.0006018113,0.0005356235,0.00007546784,0.00045543158],"domain_scores_gemma":[0.99878097,0.0004423757,0.0002066153,0.0004814643,0.0000041239327,0.00008445033],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00062152545,0.0003150896,0.00064876943,0.00016017347,0.000204096,0.000011206891,0.0003661957,0.0003465643,0.0016754116],"category_scores_gemma":[0.0000326633,0.00026523866,0.00009344971,0.00040340103,0.0007823101,0.00006580043,0.0002652092,0.00032387266,0.000039157017],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017413219,0.00031744214,0.04145465,0.000012943143,0.00017495491,0.0000023828547,0.0023531392,0.010155404,0.94439596,0.00017986931,0.00038756808,0.00039156165],"study_design_scores_gemma":[0.0040374743,0.0016924413,0.21842387,0.000020525902,0.0007816347,0.00006721495,0.0045206514,0.0010446826,0.7637737,0.0013635264,0.0032358742,0.001038446],"about_ca_topic_score_codex":0.0008728525,"about_ca_topic_score_gemma":0.0029845263,"teacher_disagreement_score":0.1806223,"about_ca_system_score_codex":0.000071594484,"about_ca_system_score_gemma":0.0000127130415,"threshold_uncertainty_score":0.99998},"labels":[],"label_agreement":null},{"id":"W2148686392","doi":"10.1128/aem.02815-08","title":"Assessment of the Microbial Ecology of Ruminal Methanogens in Cattle with Different Feed Efficiencies","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":341,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Rumen; Biology; 16S ribosomal RNA; Strain (injury); Population; Microbial ecology; Genotype; Animal science; Methanogenesis; Ecology; Bacteria; Veterinary medicine; Microbiology; Food science; Methane; Gene; Fermentation; Genetics","score_opus":0.005761621224787914,"score_gpt":0.18261831808667553,"score_spread":0.17685669686188762,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148686392","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991061,0.000042689848,0.0000014802431,0.00030525707,0.00002319181,0.0001826972,0.00007850553,0.0000031958327,0.0002568952],"genre_scores_gemma":[0.999658,0.00004119354,0.000042119656,0.00016601577,0.000011198461,0.000006206356,0.000061328,5.5223654e-7,0.000013375418],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993568,0.00005693325,0.00018048876,0.00019956277,0.000028809409,0.00017737006],"domain_scores_gemma":[0.99974394,0.00008192326,0.00010363335,0.0000451354,0.000002895131,0.000022502441],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000053939923,0.00011155592,0.00024943246,0.000013619528,0.000051882063,0.0000018699939,0.00012291358,0.00007954296,0.000067893],"category_scores_gemma":[0.0000014345954,0.000038578153,0.000038759,0.00007088171,0.0004745088,0.00000998292,0.00006369321,0.00007804171,7.496773e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004128549,0.0002984108,0.053695187,0.0000029639327,0.0000052734126,2.9790294e-7,0.00003191438,0.0000085776,0.9441336,0.00046638,0.000008990748,0.0013071412],"study_design_scores_gemma":[0.00029626267,0.00044504652,0.77714723,0.0000045001966,0.000007145702,0.000014112192,0.00023147993,0.0000016044137,0.22159614,0.00011065183,0.00008340617,0.00006243431],"about_ca_topic_score_codex":0.00001769932,"about_ca_topic_score_gemma":0.00008842046,"teacher_disagreement_score":0.72345203,"about_ca_system_score_codex":0.000021411674,"about_ca_system_score_gemma":0.0000040499363,"threshold_uncertainty_score":0.17483474},"labels":[],"label_agreement":null},{"id":"W2148737815","doi":"10.1128/aem.02701-06","title":"Potential for Mercury Reduction by Microbes in the High Arctic","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mercury impact and mitigation studies","field":"Environmental Science","cited_by":101,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique; McGill University; Université de Montréal; Cégep Marie-Victorin","funders":"Division of Chemistry; National Institute of Environmental Health Sciences; National Science Foundation","keywords":"Mercury (programming language); Biogeochemical cycle; Methylmercury; Arctic; Environmental chemistry; Bioaccumulation; Pollutant; Psychrophile; Chemistry; Environmental science; Biomagnification; Ecology; Bacteria; Biology","score_opus":0.004495389099392798,"score_gpt":0.20074927409522048,"score_spread":0.1962538849958277,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148737815","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99806285,0.00018288774,0.00047209553,0.0003907713,0.00009734728,0.00036016532,0.000060707745,0.000007101579,0.00036607537],"genre_scores_gemma":[0.99843967,0.00013187971,0.00033752082,0.000634542,0.000041579955,0.000033357228,0.00023415948,0.000008132445,0.00013914685],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99924153,0.000021445077,0.00017447451,0.00024393237,0.00003767104,0.00028095572],"domain_scores_gemma":[0.9997748,0.000048371472,0.000049219943,0.00009480616,4.391972e-7,0.000032378965],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002971599,0.00012443106,0.00011764221,0.000020221287,0.00015545335,0.0000087572325,0.00009352511,0.000077253404,0.00025431963],"category_scores_gemma":[0.0000023577657,0.000091981354,0.0000268207,0.00004549388,0.00041623987,0.00004167419,0.000067530964,0.00008575288,0.000058349375],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033938715,0.00006463631,0.0024523423,0.0000033746883,0.000008107254,6.2802957e-7,0.00048306142,0.000009230508,0.9898819,0.00010875174,0.003482438,0.0034715885],"study_design_scores_gemma":[0.005441167,0.00062491745,0.3251128,0.000016574777,0.00017072253,0.0008217774,0.019253137,0.000016104092,0.40413994,0.006053689,0.2369866,0.0013625944],"about_ca_topic_score_codex":0.00012032089,"about_ca_topic_score_gemma":0.00002243031,"teacher_disagreement_score":0.58574194,"about_ca_system_score_codex":0.000066059714,"about_ca_system_score_gemma":0.0000010108495,"threshold_uncertainty_score":0.37508908},"labels":[],"label_agreement":null},{"id":"W2148831328","doi":"10.1128/aem.03338-13","title":"Ubiquity of Insect-Derived Nitrogen Transfer to Plants by Endophytic Insect-Pathogenic Fungi: an Additional Branch of the Soil Nitrogen Cycle","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Entomopathogenic Microorganisms in Pest Control","field":"Agricultural and Biological Sciences","cited_by":250,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Brock University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Metarhizium; Botany; Pathogenic fungus; Endophyte; Beauveria bassiana; Insect; Agronomy; Fungus; Metarhizium anisopliae; Biological pest control","score_opus":0.005306688740299838,"score_gpt":0.15236743827566074,"score_spread":0.1470607495353609,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148831328","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9907611,0.00033976996,0.0000066120188,0.000061379105,0.000043548553,0.0005619634,0.008134063,0.000014256881,0.00007728808],"genre_scores_gemma":[0.99803716,0.00006803329,0.00004481949,0.0005485086,0.000051276522,0.00008992238,0.0011440497,0.000004096965,0.000012123727],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987578,0.00010821085,0.0003389603,0.00038391922,0.000082616985,0.00032850076],"domain_scores_gemma":[0.9995776,0.000111080866,0.000067637346,0.000123901,0.000007274161,0.000112506896],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009275258,0.00021605473,0.00030556228,0.00001376025,0.00012583032,0.000009294603,0.00034936977,0.00016894548,0.0028977352],"category_scores_gemma":[0.0000039123684,0.00010058731,0.000099723096,0.000078258694,0.00028994383,0.000051630217,0.00015073693,0.00012533047,0.00005397789],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043098484,0.00017774843,0.0024568255,0.000005376237,0.000036766214,2.9710367e-7,0.00013705132,0.0000039546458,0.9898323,0.000024165662,0.00021570142,0.007066737],"study_design_scores_gemma":[0.0004547627,0.00024930987,0.037844345,0.0000067231067,0.000024281673,0.00005024095,0.00015608767,0.0000027692377,0.95942783,0.0008405841,0.00074535346,0.00019771984],"about_ca_topic_score_codex":0.00013653572,"about_ca_topic_score_gemma":0.00010250602,"teacher_disagreement_score":0.03538752,"about_ca_system_score_codex":0.00003142897,"about_ca_system_score_gemma":0.000008211265,"threshold_uncertainty_score":0.99801373},"labels":[],"label_agreement":null},{"id":"W2148841109","doi":"10.1128/aem.00137-06","title":"A Virulence and Antimicrobial Resistance DNA Microarray Detects a High Frequency of Virulence Genes in <i>Escherichia coli</i> Isolates from Great Lakes Recreational Waters","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ste. Anne's Hospital; Environment and Climate Change Canada; Université de Montréal; Biotechnology Research Institute","funders":"Canadian Water Network","keywords":"Virulence; Biology; Escherichia coli; Microbiology; Gene; DNA microarray; Antibiotic resistance; Microarray; Pathogenic Escherichia coli; Genetics; Antimicrobial; Bacteria; Gene expression","score_opus":0.003438494869066098,"score_gpt":0.1773382868617644,"score_spread":0.17389979199269828,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148841109","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99550384,0.0035687613,0.00005062464,0.00007713811,0.00002971589,0.0002508691,0.00039231725,0.0000064425044,0.000120274446],"genre_scores_gemma":[0.9937065,0.002812939,0.0026999516,0.00016275271,0.000052187574,0.000045205492,0.0004154284,0.000018406141,0.000086626096],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987594,0.000064771724,0.00027246348,0.0005483328,0.000040025057,0.00031500924],"domain_scores_gemma":[0.99964154,0.00004063396,0.00009525607,0.00017255498,0.0000069060325,0.00004308947],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000087105465,0.00023235948,0.00027430704,0.00004142073,0.000094418705,0.000012135416,0.00013845469,0.00018280568,0.000012447228],"category_scores_gemma":[0.0000065227578,0.00022002582,0.00003245922,0.00005649899,0.00076156395,0.000007842686,0.00019509558,0.000104614046,0.00000280555],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016390104,0.00006618726,0.032029323,0.000027673992,0.00003886619,0.0000027208825,0.000053483036,0.000006838462,0.9673175,0.00003983786,0.00008313095,0.00017052708],"study_design_scores_gemma":[0.00091002986,0.00007712923,0.05847653,0.000029064167,0.000015490908,0.0000066066514,0.00007418806,0.0000023594328,0.9390037,0.00023180597,0.0009240367,0.00024906587],"about_ca_topic_score_codex":0.00040004632,"about_ca_topic_score_gemma":0.0005708901,"teacher_disagreement_score":0.028313817,"about_ca_system_score_codex":0.000026522319,"about_ca_system_score_gemma":0.000020283931,"threshold_uncertainty_score":0.8972392},"labels":[],"label_agreement":null},{"id":"W2149006596","doi":"10.1128/aem.01729-06","title":"Characterization of the Prokaryotic Diversity in Cold Saline Perennial Springs of the Canadian High Arctic","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":130,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University; National Research Council Canada; Biotechnology Research Institute","funders":"Fonds Québécois de la Recherche sur la Nature et les Technologies; Natural Sciences and Engineering Research Council of Canada; McGill University; National Aeronautics and Space Administration","keywords":"Bacteroidetes; Gammaproteobacteria; Firmicutes; Crenarchaeota; Library; Biology; Proteobacteria; Temperature gradient gel electrophoresis; Chemocline; Euryarchaeota; Planctomycetes; Deltaproteobacteria; Acidobacteria; Archaea; Actinobacteria; Verrucomicrobia; Gemmatimonadetes; Botany; Ecology; 16S ribosomal RNA; Bacteria; Genetics; Anoxic waters","score_opus":0.004878550632525556,"score_gpt":0.155619190815372,"score_spread":0.15074064018284644,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149006596","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99927413,0.0000040547147,0.0000021467615,0.00012783246,0.0000869146,0.0002563009,0.000064283704,0.0000014279424,0.00018289546],"genre_scores_gemma":[0.9994648,0.000008492139,0.000016525979,0.00039588136,0.000007427416,0.0000018120238,0.000056781075,0.000003953691,0.000044298842],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99940884,0.00006765602,0.00016634719,0.00013743706,0.000026078726,0.00019364347],"domain_scores_gemma":[0.9996531,0.000032712298,0.000102959406,0.00017961721,8.4999016e-7,0.000030783798],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018884739,0.000085273605,0.00013553779,0.0000219996,0.00024620438,0.0000011582488,0.0002725539,0.00012956934,0.00061917416],"category_scores_gemma":[0.0000034074055,0.000060119135,0.000027666085,0.000078710786,0.00093414757,0.000018808434,0.00073924795,0.00018127976,0.0000100250945],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016862328,0.0000375408,0.3237251,0.0000039190663,0.0000039794613,1.7288194e-7,0.00027001023,0.000010962748,0.675697,0.00017597593,0.000006450928,0.000051984352],"study_design_scores_gemma":[0.00025220698,0.000025958121,0.90888005,0.000003955299,0.0000090504955,0.000005171893,0.00004347153,0.0000013310453,0.089965016,0.00014110081,0.0006145241,0.000058169502],"about_ca_topic_score_codex":0.041429978,"about_ca_topic_score_gemma":0.24931203,"teacher_disagreement_score":0.58573204,"about_ca_system_score_codex":0.00014595353,"about_ca_system_score_gemma":0.000009294494,"threshold_uncertainty_score":0.96495324},"labels":[],"label_agreement":null},{"id":"W2149091989","doi":"10.1128/aem.66.4.1499-1508.2000","title":"Characterization of the Protocatechuic Acid Catabolic Gene Cluster from <i>Streptomyces</i> sp. Strain 2065","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":101,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; University of British Columbia","keywords":"Gene cluster; Biology; Gene; Dioxygenase; Biochemistry; Catabolism; Streptomyces; Bacteria; Molecular biology; Genetics; Enzyme","score_opus":0.001890613721838951,"score_gpt":0.1488009994236148,"score_spread":0.14691038570177584,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149091989","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985956,0.00021007338,0.00006115312,0.000046672358,0.000079948884,0.0004420214,0.0005071111,0.000007003015,0.00005042699],"genre_scores_gemma":[0.99680495,0.0004254,0.00013559898,0.00023854588,0.00018362736,0.000043275726,0.0018954374,0.000014509987,0.00025866172],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993472,0.0000236711,0.0001646194,0.00029728288,0.000022586011,0.0001446174],"domain_scores_gemma":[0.99967027,9.504148e-7,0.000059248476,0.00024204349,0.0000019656738,0.0000255349],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000045693367,0.00013636712,0.00012662106,0.000012306943,0.000050250404,0.000004897628,0.00011290894,0.00014407565,0.00010484511],"category_scores_gemma":[0.0000010423026,0.00010444732,0.00003716544,0.000032947966,0.00016156342,0.0000024813628,0.00006686161,0.00006869689,0.0000140452175],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038192793,0.0000405847,0.0003196753,0.0000057999823,0.0000223284,6.2902906e-8,0.00003699647,0.000017133685,0.9941471,0.0000026600403,0.000036285994,0.005333153],"study_design_scores_gemma":[0.000351709,0.00003086824,0.008709854,0.000003544747,0.000015445748,0.000020570564,0.000012363382,0.0000015183876,0.9591235,0.000006711888,0.03161005,0.00011389772],"about_ca_topic_score_codex":0.000012542778,"about_ca_topic_score_gemma":0.0000023447471,"teacher_disagreement_score":0.035023663,"about_ca_system_score_codex":0.000005928501,"about_ca_system_score_gemma":0.000006203915,"threshold_uncertainty_score":0.4259238},"labels":[],"label_agreement":null},{"id":"W2149115022","doi":"10.1128/aem.02566-07","title":"Molecular Analysis as an Aid To Assess the Public Health Risk of Non-O157 Shiga Toxin-Producing <i>Escherichia coli</i> Strains","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":185,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; McGill University; University of British Columbia; McMaster University; Public Health Agency of Canada","funders":"National Health and Medical Research Council; Institute of Infection and Immunity; Canadian Institutes of Health Research; Killam Trusts; Michael Smith Health Research BC; Medical Research Council; Public Health Agency; Public Health Agency of Canada; Howard Hughes Medical Institute","keywords":"Biology; Serotype; Virulence; Outbreak; Pathogenicity island; Shiga toxin; Microbiology; Escherichia coli; Transmission (telecommunications); Virology; Genetics; Gene","score_opus":0.015154840791127985,"score_gpt":0.253510051097394,"score_spread":0.238355210306266,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149115022","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99688077,0.00051811285,0.0013162001,0.00043872764,0.000026959282,0.00043234235,0.00015736137,0.0000076046954,0.00022190342],"genre_scores_gemma":[0.9947666,0.001462402,0.0012889984,0.0019510094,0.000049075265,0.00006936932,0.00034221768,0.000022956134,0.00004738421],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983188,0.0002043974,0.00027749335,0.0006269217,0.000088903085,0.00048348602],"domain_scores_gemma":[0.9990993,0.000022185404,0.00014204113,0.00052953424,0.000011220792,0.0001956964],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045895454,0.00023067626,0.000365108,0.00006814122,0.00032136132,0.000013167647,0.00030280717,0.00012213648,0.000018630006],"category_scores_gemma":[0.000027496722,0.00018361855,0.000104472536,0.0002333481,0.0005347575,0.000005081206,0.0004053335,0.00018526455,0.000007511378],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035273883,0.0001506607,0.01367922,0.0000086873515,0.00056389143,0.000002537296,0.00047259385,0.00015618357,0.984145,0.00004168487,0.00015175254,0.0005925466],"study_design_scores_gemma":[0.0014578962,0.002070022,0.22269216,0.000005643248,0.00023891819,0.00006121741,0.002922981,0.00008157528,0.7483514,0.000041179213,0.021337532,0.0007395007],"about_ca_topic_score_codex":0.00011794952,"about_ca_topic_score_gemma":0.00010426974,"teacher_disagreement_score":0.23579359,"about_ca_system_score_codex":0.000034294066,"about_ca_system_score_gemma":0.00007804209,"threshold_uncertainty_score":0.74877477},"labels":[],"label_agreement":null},{"id":"W2149182216","doi":"10.1128/aem.02844-08","title":"Distribution of Sulfonamide Resistance Genes in<i>Escherichia coli</i>and<i>Salmonella</i>Isolates from Swine and Chickens at Abattoirs in Ontario and Quebec, Canada","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; University of Guelph","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Salmonella; Escherichia coli; Biology; Microbiology; Sulfonamide; Enterobacteriaceae; Gene; Veterinary medicine; Genetics; Bacteria; Medicine; Chemistry","score_opus":0.0047835106654092645,"score_gpt":0.17255356059047172,"score_spread":0.16777004992506245,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149182216","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99782103,0.0012621908,0.000002236698,0.00034288704,0.000015905487,0.00018093067,0.000104622624,0.0000039564325,0.00026625415],"genre_scores_gemma":[0.99721014,0.001741724,0.00008586017,0.0005567713,0.000005380955,0.0000022760332,0.00020264124,0.0000073761025,0.00018783893],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989303,0.000028472989,0.0002587281,0.00042885906,0.00004932136,0.00030434693],"domain_scores_gemma":[0.9996576,0.000053269574,0.000067326386,0.00009266016,2.676464e-7,0.00012890954],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000633605,0.000210954,0.00028210718,0.000013427555,0.00006953198,0.0000074533623,0.000060285416,0.00010302489,0.00014627965],"category_scores_gemma":[0.0000021370415,0.00019662386,0.000010853959,0.00004173113,0.00059216295,0.000059945123,0.00020788478,0.00015928241,0.000002964569],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007529647,0.00006086835,0.3003867,0.000004141817,0.0000052708597,0.000006745348,0.000126396,0.000014469518,0.698391,0.000011991235,0.000049940358,0.000867167],"study_design_scores_gemma":[0.0008624719,0.00003754551,0.9491616,0.000014177049,0.000013255952,0.000009887512,0.000090750385,0.00001796321,0.044179764,0.00023273978,0.005169684,0.00021018501],"about_ca_topic_score_codex":0.43636516,"about_ca_topic_score_gemma":0.9396408,"teacher_disagreement_score":0.6542113,"about_ca_system_score_codex":0.00039473383,"about_ca_system_score_gemma":0.0000103829925,"threshold_uncertainty_score":0.80180883},"labels":[],"label_agreement":null},{"id":"W2149212946","doi":"10.1128/aem.01715-07","title":"Identification by Quantitative Carrier Test of Surrogate Spore-Forming Bacteria To Assess Sporicidal Chemicals for Use against <i>Bacillus anthracis</i>","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada; University of Ottawa","funders":"University of Manitoba; University of Ottawa; U.S. Department of Agriculture","keywords":"Spore; Bacillus anthracis; Microbiology; Bacillus subtilis; Bacillus licheniformis; Peracetic acid; Bacteria; Disinfectant; Sodium hypochlorite; Food science; Chlorine dioxide; Bacillales; Endospore; Sterilization (economics); Chemistry; Biology; Hydrogen peroxide; Biochemistry","score_opus":0.014998038278616104,"score_gpt":0.25715408893343833,"score_spread":0.24215605065482224,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149212946","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99269867,0.00013855146,0.004417991,0.00001702487,0.00008822261,0.00046268487,0.0021183365,0.000004724218,0.000053771524],"genre_scores_gemma":[0.99557066,0.00019758326,0.0012827897,0.00014200421,0.00005452765,0.000031040163,0.002546852,0.000024337427,0.000150181],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99878687,0.000013962892,0.0003532785,0.0004372941,0.00004714429,0.0003614586],"domain_scores_gemma":[0.99944866,0.00008743569,0.00012720656,0.00019919204,0.000019352588,0.00011818279],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035919403,0.00018280616,0.00024266829,0.00003945551,0.00008528545,0.000017204322,0.0001286804,0.00020924304,0.000014451705],"category_scores_gemma":[0.000042974956,0.0001754966,0.00005555042,0.00005120455,0.00026255654,0.000008114703,0.00012565832,0.000065730186,0.000005370363],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037674967,0.00009171873,0.0018858069,0.000020524136,0.000031132542,6.2061395e-7,0.00006277732,0.0000013763257,0.99301666,0.000027607251,0.00023895864,0.004246048],"study_design_scores_gemma":[0.0006225667,0.0002110142,0.0049296133,0.000004723253,0.000012111632,0.0000064485766,0.00020911043,0.00000493887,0.9736212,0.0000075418293,0.020173185,0.00019756772],"about_ca_topic_score_codex":0.000010533018,"about_ca_topic_score_gemma":0.000008376681,"teacher_disagreement_score":0.019934226,"about_ca_system_score_codex":0.000028754217,"about_ca_system_score_gemma":0.000012808911,"threshold_uncertainty_score":0.71565443},"labels":[],"label_agreement":null},{"id":"W2149279556","doi":"10.1128/aem.01037-07","title":"Characterization and Synergistic Interactions of <i>Fibrobacter succinogenes</i> Glycoside Hydrolases","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Cooperative State Research, Education, and Extension Service; U.S. Department of Agriculture","keywords":"Fibrobacter succinogenes; Glycoside hydrolase; Chemistry; Characterization (materials science); Biochemistry; Glycoside; Biology; Microbiology; Enzyme; Stereochemistry; Nanotechnology; Materials science","score_opus":0.002984900397340733,"score_gpt":0.17877487632476455,"score_spread":0.17578997592742382,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149279556","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965161,0.00009976352,0.003003937,0.00003949991,0.00008366487,0.000096591255,0.00006448962,0.0000057900124,0.00009017386],"genre_scores_gemma":[0.9971954,0.0003252231,0.00012530807,0.0002237562,0.00009286181,0.0000051486527,0.0018604051,0.000011192509,0.00016065415],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994546,0.00001257235,0.00016881037,0.00023110877,0.000016145203,0.00011674332],"domain_scores_gemma":[0.9997689,0.000007810124,0.000082094484,0.000099342484,0.0000035853043,0.00003827666],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005792219,0.000101163845,0.00009861052,0.000034522847,0.00005069749,0.000004981919,0.000031587097,0.0000784579,0.000025510104],"category_scores_gemma":[0.0000031968693,0.00009993577,0.000017275273,0.000022289309,0.00013898365,0.0000047630333,0.00006316889,0.000039903545,0.00000344409],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000072176896,0.000043183652,0.004611957,0.000009313186,0.000018753995,3.1002662e-7,0.00003334619,0.000001153804,0.99274695,0.00006192089,0.000016393784,0.0023845485],"study_design_scores_gemma":[0.0002473175,0.00006485439,0.030955654,0.0000034135167,0.000014167717,0.00006150658,0.00006372211,0.0000018793646,0.95167464,0.000007143074,0.016805863,0.000099846984],"about_ca_topic_score_codex":0.000003036185,"about_ca_topic_score_gemma":0.000005708131,"teacher_disagreement_score":0.04107231,"about_ca_system_score_codex":0.0000066108432,"about_ca_system_score_gemma":0.0000033313888,"threshold_uncertainty_score":0.40752625},"labels":[],"label_agreement":null},{"id":"W2149567100","doi":"10.1128/aem.01112-07","title":"Design and Performance of a 16S rRNA-Targeted Oligonucleotide Probe for Detection of Members of the Genus <i>Bdellovibrio</i> by Fluorescence In Situ Hybridization","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Bdellovibrio; Biology; Oligonucleotide; 16S ribosomal RNA; Fluorescence in situ hybridization; Ribosomal RNA; In situ; Oligomer restriction; In situ hybridization; Molecular probe; Nucleic acid thermodynamics; Molecular biology; Bacteria; Genetics; DNA; Chemistry; Base sequence; Gene; Messenger RNA","score_opus":0.0038991698796939614,"score_gpt":0.16088518662204412,"score_spread":0.15698601674235016,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149567100","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983061,0.00009636726,0.000997084,0.0000054608895,0.000018485034,0.00052714377,0.00001839249,0.0000028464651,0.000028132123],"genre_scores_gemma":[0.9956299,0.00009933801,0.004200979,0.000013577152,0.0000028781951,0.0000097066195,0.000020966418,0.0000082032675,0.000014445663],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993369,0.000022354048,0.00024345638,0.00019248373,0.000041028874,0.00016380452],"domain_scores_gemma":[0.9997077,0.000036445253,0.00014127947,0.00008989384,0.0000010228972,0.000023645758],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017449935,0.00010841007,0.00015877715,0.000023812006,0.000041409017,0.0000014328352,0.00007518796,0.00006317518,0.000010192009],"category_scores_gemma":[0.0000014139777,0.00008335728,0.000024212648,0.00006391904,0.00041042134,0.000040427836,0.00008286974,0.00004044177,9.3566223e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021741271,0.0000712869,0.017714951,0.000019715308,0.000011002826,1.9721604e-7,0.00019209881,0.00014090793,0.97811866,0.0000016174171,0.0000075662238,0.003504586],"study_design_scores_gemma":[0.0006494849,0.00019208575,0.027360488,0.000007179838,0.000019437099,0.000011953932,0.00007897926,0.00018877117,0.97132874,0.000012127765,0.00007582637,0.00007492441],"about_ca_topic_score_codex":0.000050938495,"about_ca_topic_score_gemma":0.000015321848,"teacher_disagreement_score":0.0096455375,"about_ca_system_score_codex":0.000040901763,"about_ca_system_score_gemma":0.0000021992803,"threshold_uncertainty_score":0.33992112},"labels":[],"label_agreement":null},{"id":"W2149637506","doi":"10.1128/aem.00219-13","title":"Ruminant Rhombencephalitis-Associated Listeria monocytogenes Strains Constitute a Genetically Homogeneous Group Related to Human Outbreak Strains","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Ministero della Salute","keywords":"Outbreak; Listeria monocytogenes; Biology; Serotype; Subtyping; Typing; Multilocus sequence typing; Genotype; Listeria; Microbiology; Multiplex polymerase chain reaction; Virology; Veterinary medicine; Polymerase chain reaction; Bacteria; Genetics; Gene","score_opus":0.017087844127123546,"score_gpt":0.24449677999262187,"score_spread":0.22740893586549832,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149637506","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965206,0.0003486661,0.00016695222,0.00009382173,0.00019267378,0.0008663028,0.00064735103,0.000036481542,0.0011271522],"genre_scores_gemma":[0.9947911,0.00019221405,0.00096529315,0.0007456274,0.00007266152,0.00017535132,0.0026416704,0.000058699694,0.00035738462],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977323,0.00009165352,0.0005303833,0.00091224967,0.00006599692,0.0006674483],"domain_scores_gemma":[0.999077,0.000010482185,0.00013901963,0.0004969694,0.000010654877,0.00026587336],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00012619264,0.0004462644,0.00040102727,0.000056610443,0.0002617844,0.00005028856,0.00034877038,0.00048749155,0.0002381671],"category_scores_gemma":[0.000008489525,0.0004445133,0.00010169082,0.000060347775,0.00075525104,0.000007495357,0.0007453794,0.00012976307,0.00012188658],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029586923,0.00016073069,0.003032401,0.000009214079,0.00016515734,0.0000107032865,0.00012573074,0.000019450858,0.992125,0.0004911653,0.00018657374,0.0036442839],"study_design_scores_gemma":[0.005855657,0.0033505003,0.24050891,0.00005109664,0.00024300026,0.0013300666,0.0016923916,0.000025776273,0.7128196,0.0011831424,0.029988464,0.0029514178],"about_ca_topic_score_codex":0.00006894469,"about_ca_topic_score_gemma":0.000073141484,"teacher_disagreement_score":0.27930543,"about_ca_system_score_codex":0.0000778867,"about_ca_system_score_gemma":0.00002535575,"threshold_uncertainty_score":0.9998007},"labels":[],"label_agreement":null},{"id":"W2149649532","doi":"10.1128/aem.03983-12","title":"Changes in the Rumen Epimural Bacterial Diversity of Beef Cattle as Affected by Diet and Induced Ruminal Acidosis","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":219,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Alberta Crop Industry Development Fund","keywords":"Biology; Temperature gradient gel electrophoresis; Rumen; Pyrosequencing; Population; Microbiome; Ruminococcus; Forage; Animal science; Lactobacillus; Acidosis; Microbiology; Food science; Bacteria; 16S ribosomal RNA; Agronomy; Biochemistry; Genetics; Endocrinology; Gene; Fermentation","score_opus":0.008022236821818459,"score_gpt":0.16903613877399323,"score_spread":0.16101390195217477,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149649532","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985122,0.00006456301,4.025653e-8,0.0009049393,0.00002236447,0.00023636797,0.0001317639,0.000004763807,0.00012301553],"genre_scores_gemma":[0.9990491,0.00018299185,0.0000042947486,0.0003323108,0.000026879457,0.000025175581,0.00036779314,5.818798e-7,0.000010875015],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99945873,0.00006526794,0.000085633765,0.000195815,0.000023494227,0.00017105234],"domain_scores_gemma":[0.9998057,0.00008360809,0.00004745679,0.000028474971,0.0000016063241,0.00003313899],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000051971416,0.00010303665,0.00015686652,0.000008211391,0.00012415092,0.000008326142,0.00010109382,0.00009796956,0.00036906713],"category_scores_gemma":[0.000002117596,0.000042092128,0.000016868986,0.000038413153,0.00026841063,0.000030139987,0.0002660144,0.00006817301,0.000017201657],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058544487,0.00011134429,0.0063347933,0.0000025921058,0.0000053687386,2.6471741e-7,0.00014802488,9.994079e-9,0.98621184,0.000029614952,0.00020800118,0.0068895924],"study_design_scores_gemma":[0.00038787563,0.0007767418,0.90997195,0.0000027588799,0.000007701754,0.0000124946855,0.0013178356,3.5349765e-7,0.08637416,0.0002770952,0.00075706874,0.00011395492],"about_ca_topic_score_codex":0.00051150477,"about_ca_topic_score_gemma":0.00010291923,"teacher_disagreement_score":0.9036372,"about_ca_system_score_codex":0.000008546396,"about_ca_system_score_gemma":6.511517e-7,"threshold_uncertainty_score":0.40410262},"labels":[],"label_agreement":null},{"id":"W2149899599","doi":"10.1128/aem.00330-13","title":"Bacterial Communities Associated with Subsurface Geochemical Processes in Continental Serpentinite Springs","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":113,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"Joint Genome Institute; Alfred P. Sloan Foundation","keywords":"Firmicutes; Biosphere; Geology; Petroleum seep; Ultramafic rock; Microbial mat; Subsurface flow; Hydrothermal vent; Anoxic waters; Extremophile; Ecology; Geochemistry; Earth science; Hydrothermal circulation; Biology; Microorganism; Oceanography; Methane; Paleontology; Groundwater; 16S ribosomal RNA; Bacteria","score_opus":0.004152209096394072,"score_gpt":0.1548480087718477,"score_spread":0.15069579967545363,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149899599","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99727285,0.000062952924,0.0000021104167,0.0000584761,0.000029121182,0.00034923927,0.000029785922,0.000021914964,0.0021735546],"genre_scores_gemma":[0.99883795,0.00010063751,0.000112446374,0.00017447612,0.0000096801405,0.000040363255,0.00048432327,0.000018910581,0.00022122252],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990334,0.00004701186,0.00021867309,0.00027390887,0.00005240858,0.00037463283],"domain_scores_gemma":[0.9996338,0.00007565,0.00008735564,0.00012804319,0.000001201412,0.00007394551],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009698869,0.00021547232,0.00024262775,0.000024084624,0.00008712919,0.00002586172,0.00015079518,0.00015211766,0.0045397608],"category_scores_gemma":[0.0000029573685,0.00016917035,0.000015671134,0.000087024164,0.00064807653,0.000102003236,0.00027290633,0.00022783795,0.0003284595],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038523056,0.00016447568,0.13495265,0.000007675358,0.00002370496,0.0000022148909,0.0008000776,0.000054704826,0.8636622,0.000006124517,0.00008694261,0.00020072574],"study_design_scores_gemma":[0.011061872,0.00074405514,0.7336845,0.00016080076,0.00012119827,0.00024202741,0.0095672,0.00024678462,0.22422421,0.00068924617,0.016745372,0.0025127719],"about_ca_topic_score_codex":0.00054302014,"about_ca_topic_score_gemma":0.00022270912,"teacher_disagreement_score":0.639438,"about_ca_system_score_codex":0.00007273107,"about_ca_system_score_gemma":0.000003823026,"threshold_uncertainty_score":0.9963702},"labels":[],"label_agreement":null},{"id":"W2149922632","doi":"10.1128/aem.01496-09","title":"Improved Risk Analysis by Dual Direct Detection of Total and Infectious <i>Cryptosporidium</i> Oocysts on Cell Culture in Combination with Immunofluorescence Assay","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Polytechnique Montréal; Natural Sciences and Engineering Research Council of Canada","funders":"Natural Sciences and Engineering Research Council of Canada; Polytechnique Montréal","keywords":"Cryptosporidium; Immunofluorescence; Microbiology; Biology; Protozoa; Virology; Indirect immunofluorescence; Cell culture; Direct fluorescent antibody; Antibody; Immunology; Genetics; Feces","score_opus":0.0010942785128853474,"score_gpt":0.157026757216161,"score_spread":0.15593247870327565,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149922632","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99779207,0.0008213402,0.00036193035,0.000007952129,0.000059450034,0.0002248319,0.00015973327,0.000017214034,0.0005554999],"genre_scores_gemma":[0.99881554,0.0006267266,0.000030020114,0.000056696226,0.0000052340506,0.000014934917,0.00038952378,0.0000064280052,0.000054926466],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991552,0.00009333789,0.00020946388,0.00031814567,0.0000136088665,0.00021020198],"domain_scores_gemma":[0.99960655,0.0001041246,0.00014636817,0.00011949722,0.0000050600743,0.000018393042],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012243027,0.00018598457,0.00030649744,0.00012524732,0.00012615143,0.0000063934513,0.000030721592,0.0002557447,0.000015807758],"category_scores_gemma":[0.000007391968,0.00015447922,0.00003695823,0.00014323277,0.00025124862,0.000032870754,0.000023525488,0.00024394461,0.0000063670586],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018080324,0.00043356756,0.014912297,0.0000040822906,0.00011917107,0.0000010971718,0.00016476505,0.00004380794,0.98114777,0.000035752757,0.000029758556,0.0029271136],"study_design_scores_gemma":[0.0030998383,0.0018019897,0.11716155,0.000006509135,0.0002872362,0.00007833058,0.00020109946,0.000022102278,0.8767393,0.000037546648,0.0003038299,0.00026063834],"about_ca_topic_score_codex":0.00012624936,"about_ca_topic_score_gemma":0.0000268337,"teacher_disagreement_score":0.10440846,"about_ca_system_score_codex":0.000051117775,"about_ca_system_score_gemma":0.0000053566346,"threshold_uncertainty_score":0.62994796},"labels":[],"label_agreement":null},{"id":"W2150147868","doi":"10.1128/aem.02928-07","title":"Biphenyl Dioxygenase from an Arctic Isolate Is Not Cold Adapted","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Institut national de la recherche scientifique","keywords":"Biphenyl; Dioxygenase; Arctic; Chemistry; Biology; Ecology; Biochemistry; Enzyme","score_opus":0.007299610063414037,"score_gpt":0.18487014749014036,"score_spread":0.17757053742672632,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150147868","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975222,0.0014311691,0.00010377081,0.000109009794,0.00007645466,0.0001523482,0.00039350308,0.000010501446,0.00020107377],"genre_scores_gemma":[0.99275726,0.003350462,0.0007069354,0.002048987,0.00013209676,0.000021838432,0.00067450467,0.000023984097,0.00028391514],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99893206,0.000026144264,0.0001805456,0.00054480956,0.000031855005,0.00028460872],"domain_scores_gemma":[0.9995387,0.000009874556,0.00006540613,0.00028601126,0.000003134124,0.00009685409],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004269605,0.00022194412,0.00024630377,0.00003069973,0.00017859844,0.0000064408187,0.00012176373,0.00017255114,0.00013982742],"category_scores_gemma":[0.0000026023176,0.00020569518,0.000053132146,0.000029239965,0.00029916246,0.000003147066,0.00019634888,0.00009406336,0.000038822185],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009571685,0.00009213822,0.0020731636,0.0000024943756,0.00011228273,0.0000041577537,0.00008701861,0.0000015498273,0.9966873,0.00008719761,0.0004349904,0.00032196852],"study_design_scores_gemma":[0.0011661539,0.00028629167,0.024570739,0.0000017377707,0.000036452453,0.00006359661,0.0001572447,0.000008251584,0.8641672,0.00008018477,0.10908138,0.00038077342],"about_ca_topic_score_codex":0.000056835095,"about_ca_topic_score_gemma":0.000013405555,"teacher_disagreement_score":0.13252012,"about_ca_system_score_codex":0.00001448801,"about_ca_system_score_gemma":0.000008378143,"threshold_uncertainty_score":0.8388006},"labels":[],"label_agreement":null},{"id":"W2150237457","doi":"10.1128/aem.02821-07","title":"Genotypic Characterization and Prevalence of Virulence Factors among Canadian <i>Escherichia coli</i> O157:H7 Strains","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph; Ministry of Health and Long Term Care; Public Health Agency of Canada","funders":"Health Canada; Public Health Agency; Public Health Agency of Canada","keywords":"Genotype; Biology; Colicin; Lineage (genetic); Escherichia coli; Virulence; Tetracycline; Microbiology; Gene; Genetics; Veterinary medicine; Antibiotics; Medicine","score_opus":0.0061733775787621405,"score_gpt":0.1793724871545345,"score_spread":0.17319910957577236,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150237457","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987919,0.00044241408,0.00005368391,0.000015916028,0.00002384864,0.00022124794,0.0003102886,0.0000039170063,0.00013679262],"genre_scores_gemma":[0.9950442,0.004108124,0.00010234351,0.0001327181,0.000023014896,0.000018716963,0.00033358418,0.0000125519855,0.00022474819],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992357,0.000030363079,0.00013712137,0.0003105443,0.00003164373,0.00025461847],"domain_scores_gemma":[0.99968654,0.000007956516,0.000058254493,0.0001305582,0.0000044553,0.0001122379],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005006981,0.00014724083,0.00014671418,0.000030119521,0.00014846341,0.0000038253424,0.000093365314,0.00013429804,0.000021745995],"category_scores_gemma":[0.000006397839,0.00014006159,0.00002048029,0.000031838274,0.0007797051,0.0000047392145,0.00012754223,0.00008139284,0.0000018414697],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010478066,0.000018692088,0.19095506,0.000024069692,0.000025070234,8.9522297e-7,0.00014084778,9.270381e-7,0.80862385,0.000013235332,0.000013358428,0.00017353753],"study_design_scores_gemma":[0.0002111369,0.0001119248,0.82866013,0.0000037588468,0.000009711187,0.000009121058,0.00009653994,0.0000040892446,0.16879886,0.000002660109,0.0019559602,0.0001360947],"about_ca_topic_score_codex":0.00058961095,"about_ca_topic_score_gemma":0.0006043039,"teacher_disagreement_score":0.639825,"about_ca_system_score_codex":0.000018927756,"about_ca_system_score_gemma":0.00003433951,"threshold_uncertainty_score":0.5711546},"labels":[],"label_agreement":null},{"id":"W2150430910","doi":"10.1128/aem.02294-09","title":"Oriented Immobilization of Bacteriophages for Biosensor Applications","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":131,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Institute for Nanotechnology; University of Alberta; University of Guelph","funders":"Ontario Ministry of Food and Agriculture","keywords":"Bacteriophage; Lytic cycle; Recombinant DNA; Capsid; Phagemid; Escherichia coli; Streptavidin; Myoviridae; Biology; Fusion protein; Bacterial virus; Molecular biology; Chemistry; Microbiology; Gene; Virology; Biochemistry; Virus; Biotin","score_opus":0.003519462207987179,"score_gpt":0.19727858180463614,"score_spread":0.19375911959664896,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150430910","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9942747,0.000053169788,0.0034784258,0.00010804594,0.000045496367,0.0006711885,0.00022982652,0.000021683261,0.0011174607],"genre_scores_gemma":[0.99639684,0.000085080894,0.0025335578,0.000288817,0.000023331639,0.00006110723,0.00037849133,0.000008885568,0.00022386911],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99932444,0.0000094843,0.00020381327,0.00027343997,0.000017908691,0.00017090434],"domain_scores_gemma":[0.999701,0.000024990715,0.00009286996,0.00013704729,0.0000013867926,0.000042656822],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004039816,0.00012212966,0.0001510791,0.000024748837,0.00010071516,0.000005695482,0.00007408556,0.000082695646,0.00040402313],"category_scores_gemma":[0.000001340635,0.000114673494,0.000043053096,0.00005287086,0.00022274266,0.000051118455,0.000052030104,0.000046835023,0.000051531206],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026904429,0.00012637702,0.00022725384,0.0000041441463,0.0000073782976,9.488018e-8,0.00006703366,0.000008944029,0.98359716,0.00031859975,0.00013971468,0.015476384],"study_design_scores_gemma":[0.001061065,0.00036751217,0.09252732,0.000006606307,0.000055017917,0.000057863956,0.00027983307,0.0000246214,0.7080492,0.00034223657,0.19688597,0.00034276157],"about_ca_topic_score_codex":0.000009071307,"about_ca_topic_score_gemma":0.0000035417831,"teacher_disagreement_score":0.27554798,"about_ca_system_score_codex":0.000041675776,"about_ca_system_score_gemma":0.0000017426836,"threshold_uncertainty_score":0.46762493},"labels":[],"label_agreement":null},{"id":"W2150452311","doi":"10.1128/aem.01384-09","title":"<i>Pseudoalteromonas</i> Bacteria Are Capable of Degrading Paralytic Shellfish Toxins","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Marine Toxins and Detection Methods","field":"Environmental Science","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Nova Scotia Department of Agriculture; Institute for Marine Biosciences; Dalhousie University","funders":"","keywords":"Biology; Pseudoalteromonas; Mytilus; Microbiology; Shellfish; Shellfish poisoning; 16S ribosomal RNA; Bacteria; Toxin; Aquatic animal; Fish <Actinopterygii>; Genetics; Ecology; Fishery","score_opus":0.005828008077899655,"score_gpt":0.19141648149419727,"score_spread":0.1855884734162976,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150452311","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9918959,0.000056188954,0.00027496996,0.00006146353,0.000060971874,0.00015245662,0.000025879099,0.00002222624,0.0074499305],"genre_scores_gemma":[0.99511576,0.00009952954,0.0038576275,0.0005203609,0.000023674289,0.0000068787854,0.000027879054,0.000010392584,0.00033788165],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99900573,0.00003859082,0.00025079292,0.0003724741,0.000046779307,0.00028563067],"domain_scores_gemma":[0.9995496,0.000029514402,0.00012473218,0.0002042541,4.846667e-7,0.000091386915],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00014024378,0.00018264695,0.0002677439,0.000030550775,0.000096822696,0.000009693353,0.00012624224,0.0001079242,0.0017586348],"category_scores_gemma":[0.000002649717,0.00016640694,0.00004886264,0.00006794285,0.000269205,0.000054846783,0.00013588039,0.000110047025,0.00009055653],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023958733,0.00008350029,0.010960915,0.0000039792717,0.0000070044343,0.000002094902,0.00006879019,0.000039266415,0.9784848,0.00005238757,0.00032444415,0.0099488245],"study_design_scores_gemma":[0.0014807454,0.0004252018,0.30345052,0.00001381156,0.000057364778,0.00024901898,0.00033560322,0.00015497276,0.6512746,0.0018639946,0.039969817,0.00072436593],"about_ca_topic_score_codex":0.000039084178,"about_ca_topic_score_gemma":0.000010372264,"teacher_disagreement_score":0.32721025,"about_ca_system_score_codex":0.0000597543,"about_ca_system_score_gemma":0.0000016884688,"threshold_uncertainty_score":0.9991539},"labels":[],"label_agreement":null},{"id":"W2150501288","doi":"10.1128/aem.01750-07","title":"Methyl Sulfide Production by a Novel Carbon Monoxide Metabolism in<i>Methanosarcina acetivorans</i>","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Pennsylvania State University; University of Pennsylvania; National Oceanic and Atmospheric Administration; National Science Foundation","keywords":"Methanogen; Methanosarcina; Methanomicrobiales; Dimethyl sulfide; Sulfide; Carbon monoxide; Chemistry; Methanosarcina barkeri; Sulfur; Methanogenesis; Biochemistry; Organic chemistry; Catalysis; Methane","score_opus":0.004003038070994192,"score_gpt":0.1761760530614293,"score_spread":0.1721730149904351,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150501288","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943576,0.0009778024,0.00027187826,0.00017797944,0.00018216498,0.0004132717,0.000025480915,0.000024943369,0.0035689136],"genre_scores_gemma":[0.99736977,0.00044121934,0.0011021075,0.00040386588,0.000041817028,0.000025584206,0.00010058614,0.000029266099,0.0004857698],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99823415,0.000045041,0.00036729916,0.0007008937,0.000080552156,0.0005720834],"domain_scores_gemma":[0.9994875,0.00005119691,0.00010671876,0.00022837243,6.5535556e-7,0.00012550958],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005964123,0.00028774768,0.00032265173,0.00006834464,0.00008550739,0.000008006476,0.00015535588,0.00024495384,0.00022625021],"category_scores_gemma":[0.0000050001245,0.00025292722,0.00004092285,0.00017887124,0.00045739766,0.00006268944,0.00021355636,0.00031846255,0.0000693504],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000072230236,0.00018134259,0.004462229,0.0000043208997,0.000020647909,0.0000030445078,0.00041355152,0.0001585686,0.9915163,0.00003585341,0.0001414203,0.0029904945],"study_design_scores_gemma":[0.0016134607,0.000078213976,0.025306594,0.0000071270597,0.0000541744,0.00009149329,0.00063860865,0.000040868075,0.92659485,0.0004597994,0.044522125,0.0005926586],"about_ca_topic_score_codex":0.00042239105,"about_ca_topic_score_gemma":0.000070102695,"teacher_disagreement_score":0.064921424,"about_ca_system_score_codex":0.00014076421,"about_ca_system_score_gemma":0.0000028384666,"threshold_uncertainty_score":0.9999923},"labels":[],"label_agreement":null},{"id":"W2150581974","doi":"10.1128/aem.01542-06","title":"Autotransporter-Encoding Sequences Are Phylogenetically Distributed among<i>Escherichia coli</i>Clinical Isolates and Reference Strains","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":127,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Biology; Escherichia coli; Microbiology; Virulence; Phylogenetic tree; Pathogenic Escherichia coli; Genetics; Phylogenetics; Multiplex polymerase chain reaction; Gene; Polymerase chain reaction","score_opus":0.013832916593760038,"score_gpt":0.2511493560949086,"score_spread":0.23731643950114858,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150581974","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973437,0.0008677427,0.0007439338,0.00006681459,0.00003943563,0.00024001375,0.00024491327,0.000014791898,0.00043861923],"genre_scores_gemma":[0.99602354,0.002204842,0.0008865644,0.00031079497,0.0000779775,0.000018216879,0.00041601376,0.00001689684,0.00004513175],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985286,0.000051471245,0.0003315777,0.00059155916,0.000039259932,0.00045751056],"domain_scores_gemma":[0.99949723,0.000046431884,0.00010180518,0.00017956995,0.0000073226224,0.00016764922],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034046042,0.000237601,0.0002752092,0.000022882046,0.00016820098,0.000017680111,0.00014610699,0.00029626256,0.000018517741],"category_scores_gemma":[0.000016770384,0.00021238353,0.000043786415,0.00004390046,0.0014259365,0.000003970728,0.00022018162,0.00023433684,0.000004002063],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000060933053,0.00006697673,0.1476036,0.000012217473,0.0000749722,0.0000051776906,0.00003177383,0.000001945854,0.85129935,0.000050663664,0.00004823836,0.0007441397],"study_design_scores_gemma":[0.00085273857,0.00046352166,0.91709644,0.00001161953,0.000037351456,0.000024127066,0.0007521639,0.000010727891,0.07226885,0.00008101472,0.008005309,0.00039615628],"about_ca_topic_score_codex":0.000013580598,"about_ca_topic_score_gemma":0.00010087457,"teacher_disagreement_score":0.7790305,"about_ca_system_score_codex":0.000015280277,"about_ca_system_score_gemma":0.000017214616,"threshold_uncertainty_score":0.8660749},"labels":[],"label_agreement":null},{"id":"W2150749451","doi":"10.1128/aem.02093-08","title":"Identification and Characterization of the Phage Gene <i>sav</i> , Involved in Sensitivity to the Lactococcal Abortive Infection Mechanism AbiV","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Danmarks Tekniske Universitet","keywords":"Mechanism (biology); Identification (biology); Biology; Microbiology; Gene; Computational biology; Bacteriophage; Sensitivity (control systems); Genetics; Virology; Escherichia coli","score_opus":0.003511733790393641,"score_gpt":0.18176752233906204,"score_spread":0.17825578854866841,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150749451","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99841726,0.0000052305727,0.00041477333,0.00051607017,0.000073483076,0.00046227203,0.000055933124,0.0000060681937,0.000048896894],"genre_scores_gemma":[0.9989617,0.000077857156,0.000027949454,0.000792083,0.000016638038,0.000018096001,0.000054349293,0.000005128264,0.000046228433],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993754,0.000059883947,0.00017629677,0.00023301842,0.000025994159,0.00012940243],"domain_scores_gemma":[0.9997325,0.00001550577,0.00009313649,0.00013100242,9.930136e-7,0.000026855187],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001330055,0.00010339921,0.00010680054,0.00001930813,0.000115048664,0.00001244712,0.000052290045,0.00007020661,0.000048039863],"category_scores_gemma":[0.0000022335776,0.000072307565,0.000021968226,0.00007940754,0.00014863913,0.00007514876,0.000119345445,0.00010336137,0.000023416364],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016042672,0.0000629689,0.0024203295,0.0000013816925,0.0000035156968,3.2659895e-7,0.00041821177,0.000012463939,0.9938472,0.00005941074,0.000011058403,0.0031470722],"study_design_scores_gemma":[0.000118533266,0.000022850274,0.53875834,0.000002825715,0.000006915287,0.00001528709,0.000041807743,0.000018802817,0.4603786,0.00006246894,0.0005197299,0.00005382816],"about_ca_topic_score_codex":0.00011238791,"about_ca_topic_score_gemma":0.00024026947,"teacher_disagreement_score":0.53633803,"about_ca_system_score_codex":0.00006540735,"about_ca_system_score_gemma":0.0000017393772,"threshold_uncertainty_score":0.29486167},"labels":[],"label_agreement":null},{"id":"W2150875046","doi":"10.1128/aem.02706-10","title":"Detection and Resolution of Cryptosporidium Species and Species Mixtures by Genus-Specific Nested PCR-Restriction Fragment Length Polymorphism Analysis, Direct Sequencing, and Cloning","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta; University of Calgary","funders":"","keywords":"Biology; Restriction fragment length polymorphism; Nested polymerase chain reaction; Genetics; Restriction enzyme; Cryptosporidium; Polymerase chain reaction; genomic DNA; Restriction site; Terminal restriction fragment length polymorphism; Genotype; Restriction digest; Molecular biology; DNA; Microbiology; Gene; Feces","score_opus":0.01017958673754624,"score_gpt":0.17013778348706632,"score_spread":0.15995819674952008,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150875046","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9887802,0.009372714,0.0006877706,0.000014394607,0.00015172503,0.00018342935,0.00017276139,0.000023109473,0.0006138891],"genre_scores_gemma":[0.9909593,0.008414611,0.00014108543,0.000034568617,0.000023639295,0.00001446183,0.00028432303,0.000010157935,0.00011783875],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99900335,0.000071652576,0.0002695292,0.00039342418,0.000016976215,0.00024507561],"domain_scores_gemma":[0.99959147,0.00009717452,0.00014663211,0.00012508992,0.000005406618,0.00003425285],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000113701535,0.00021117505,0.00033497112,0.00016798438,0.00028203335,0.000010733026,0.0000374162,0.00026726563,0.000100341575],"category_scores_gemma":[0.0000062326244,0.00019684012,0.000036015063,0.0000924723,0.000796826,0.000048660677,0.00008566498,0.00015767546,0.0000047791827],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000080285856,0.00006300401,0.027945448,0.000008728883,0.0002379776,0.0000014728179,0.00047547132,0.0000029229984,0.9697403,0.00055823306,0.000120285345,0.00076587906],"study_design_scores_gemma":[0.0009904465,0.00032650508,0.3660365,0.000009646132,0.00039613884,0.00017670155,0.0011928224,0.0000075303533,0.6209044,0.00010008944,0.009561909,0.00029733972],"about_ca_topic_score_codex":0.00020914918,"about_ca_topic_score_gemma":0.000023092567,"teacher_disagreement_score":0.34883592,"about_ca_system_score_codex":0.000055016815,"about_ca_system_score_gemma":0.000005368065,"threshold_uncertainty_score":0.8026907},"labels":[],"label_agreement":null},{"id":"W2151363916","doi":"10.1128/aem.02878-07","title":"Evaluation of the Persistence of Infectious Human Noroviruses on Food Surfaces by Using Real-Time Nucleic Acid Sequence-Based Amplification","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":127,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"NASBA; Biology; Virology; Persistence (discontinuity); Nucleic acid; Food microbiology; Microbiology; Viable but nonculturable; Food science; RNA; Bacteria; Biochemistry; Genetics","score_opus":0.06993987914904583,"score_gpt":0.28229393777732814,"score_spread":0.21235405862828233,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151363916","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99921185,0.00009577036,0.0000078715675,0.000051559557,0.00001307092,0.0003226131,0.000116558906,0.000005972851,0.00017471382],"genre_scores_gemma":[0.99950135,0.00012646284,0.00008014946,0.00011582532,0.000008667007,0.000010865027,0.00014175402,0.000007869954,0.0000070820706],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991652,0.00016465646,0.00021377187,0.0001979602,0.000098761295,0.00015967357],"domain_scores_gemma":[0.9996315,0.000020688469,0.00013614768,0.00016235681,0.0000123945065,0.000036907004],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028050444,0.000095323805,0.00022658003,0.000035993944,0.00010815273,0.0000010795186,0.00006194521,0.00007945429,0.00006564545],"category_scores_gemma":[0.0000212114,0.0000715491,0.000047675643,0.000038283626,0.0007884393,0.000015113004,0.000034440753,0.000083948966,0.0000048542365],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000065073364,0.000120331155,0.04608256,0.000013632585,0.000032381206,1.9880495e-7,0.000053122978,0.00011045032,0.9530976,0.0000055284145,0.000056580862,0.00036257217],"study_design_scores_gemma":[0.0029306277,0.0023688064,0.20450313,0.0000579696,0.00015645222,0.00014135407,0.00021090437,0.00065290084,0.7886891,0.000060558254,0.0000869604,0.0001412757],"about_ca_topic_score_codex":0.00007231561,"about_ca_topic_score_gemma":0.0000069391735,"teacher_disagreement_score":0.16440852,"about_ca_system_score_codex":0.00011225077,"about_ca_system_score_gemma":0.000027892118,"threshold_uncertainty_score":0.29176876},"labels":[],"label_agreement":null},{"id":"W2151477550","doi":"10.1128/aem.02795-10","title":"First Evidence of Genotypes Ad3a16 and Ad3a18 in North America, Obtained by Genetic Analysis of Infectious Human Adenovirus from Wastewaters of Two Urban Communities in Canada","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ministry of the Environment, Conservation and Parks; University of Ottawa","funders":"","keywords":"Genotype; Biology; Serotype; Virology; clone (Java method); Genetics; Gene","score_opus":0.009064268519951617,"score_gpt":0.20368829228361204,"score_spread":0.19462402376366042,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151477550","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965284,0.0030072874,0.000006590771,0.0000032593846,0.000005514451,0.00012777279,0.00030859155,7.924314e-7,0.000011822849],"genre_scores_gemma":[0.99797344,0.0014955694,0.00006819118,0.00004088668,0.0000034554353,0.000013208954,0.000393379,0.000009105258,0.0000027719198],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99921334,0.000085187035,0.00029329356,0.00020030802,0.00003662034,0.00017125541],"domain_scores_gemma":[0.9995821,0.0000363924,0.00012016771,0.00022311189,0.000003923659,0.000034285644],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000058262733,0.00012532953,0.00032336262,0.00010280105,0.000024785797,0.0000011920238,0.00014776412,0.000059921626,0.0000582299],"category_scores_gemma":[0.0000017957433,0.00012422728,0.000027221982,0.00010879668,0.00046094574,0.000002403617,0.0001462693,0.00007159079,2.1514161e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023274879,0.00004504733,0.38563335,0.000011553011,0.00013486021,5.9071004e-7,0.0005424894,0.00015228402,0.6128948,3.7820664e-7,0.0000045322186,0.00034742893],"study_design_scores_gemma":[0.0010486076,0.0010296201,0.36496553,0.000014158571,0.00009443237,0.0000014893632,0.00146224,0.000034201385,0.63109934,0.000010112617,0.000052597443,0.00018770077],"about_ca_topic_score_codex":0.49208316,"about_ca_topic_score_gemma":0.8677538,"teacher_disagreement_score":0.3756706,"about_ca_system_score_codex":0.000043183616,"about_ca_system_score_gemma":0.000035463698,"threshold_uncertainty_score":0.5112991},"labels":[],"label_agreement":null},{"id":"W2151510413","doi":"10.1128/aem.68.9.4613-4622.2002","title":"Isolation of Tellurite- and Selenite-Resistant Bacteria from Hydrothermal Vents of the Juan de Fuca Ridge in the Pacific Ocean","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Metal Extraction and Bioleaching","field":"Engineering","cited_by":109,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; University of Manitoba","funders":"National Science Foundation","keywords":"Metalloid; Hydrothermal vent; Hydrothermal circulation; Selenium; Bacteria; Biology; Extreme environment; Metal; Chemistry","score_opus":0.004836588113694878,"score_gpt":0.14887955678382972,"score_spread":0.14404296867013483,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151510413","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99913126,0.00029397997,0.000022056902,0.00002076663,0.000030601077,0.00008825704,0.0000832148,0.0000044172166,0.0003254481],"genre_scores_gemma":[0.9996812,0.00014801462,0.00007920285,0.000030872598,0.000012627534,0.0000016330915,0.00003115086,0.00000602636,0.000009281641],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999653,0.00003473301,0.0001312444,0.00008001926,0.000017173768,0.0000838692],"domain_scores_gemma":[0.99984884,0.000029345249,0.0000343993,0.000075706565,2.817906e-7,0.000011443955],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006379942,0.00007055417,0.000092022376,0.000016712916,0.000027721906,0.0000036132567,0.00005458879,0.00005687039,0.00006438195],"category_scores_gemma":[7.1428263e-7,0.000046050733,0.000017432243,0.000022376442,0.000074499185,0.000016315385,0.000019222187,0.000088436274,0.0000024033009],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009911185,0.00002767919,0.0055670603,0.000008868996,0.000009859003,1.7183463e-7,0.00076384994,0.000039921626,0.99257886,0.000018453122,0.000023995664,0.0009513515],"study_design_scores_gemma":[0.0013412992,0.00009074054,0.58222,0.00003878331,0.000051417348,0.00004208099,0.0028171735,0.004588483,0.39973104,0.00015150357,0.008616631,0.00031081418],"about_ca_topic_score_codex":0.00001718717,"about_ca_topic_score_gemma":0.00000508101,"teacher_disagreement_score":0.5928478,"about_ca_system_score_codex":0.00001168919,"about_ca_system_score_gemma":4.9876155e-7,"threshold_uncertainty_score":0.18778944},"labels":[],"label_agreement":null},{"id":"W2151745747","doi":"10.1128/aem.66.7.2759-2763.2000","title":"Contamination of Foods by Food Handlers: Experiments on Hepatitis A Virus Transfer to Food and Its Interruption","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":194,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Health Canada","funders":"","keywords":"Hepatitis a virus; Contamination; Food science; Virus; Chemistry; Infectious dose; Food contaminant; Contaminated food; Biology; Microbiology; Virology","score_opus":0.02052408648092349,"score_gpt":0.2577452761475119,"score_spread":0.23722118966658842,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151745747","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982601,0.00047663352,0.00010246668,0.0001911113,0.000018289604,0.00042091953,0.0003143485,0.000008278984,0.00020784195],"genre_scores_gemma":[0.99697065,0.0015901506,0.000058742593,0.0008856121,0.000017388724,0.00006299662,0.00032668517,0.0000117675345,0.00007602888],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992021,0.00004510709,0.00020469545,0.00027641086,0.00003730067,0.00023441517],"domain_scores_gemma":[0.99977803,0.000012167023,0.000013401126,0.000074161624,0.0000021251385,0.000120089244],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000064862885,0.00013128662,0.00027771635,0.000053315693,0.000037298734,0.000003296933,0.00003579201,0.000102367965,0.00031132853],"category_scores_gemma":[0.0000035851183,0.00011842845,0.000029596487,0.00002176337,0.00013110238,0.000024449855,0.000026319705,0.00009250536,0.00002382444],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006697846,0.00018109739,0.0025271059,0.000018420877,0.00006174858,0.0000010974696,0.00023958305,6.6187647e-7,0.9800683,0.000041749794,0.00019278454,0.015997661],"study_design_scores_gemma":[0.005620764,0.023308493,0.049161904,0.0000815722,0.000040137398,0.00015369162,0.00028643556,0.000023457276,0.91397965,0.000034510103,0.007081068,0.00022831571],"about_ca_topic_score_codex":0.000022624856,"about_ca_topic_score_gemma":0.000023707265,"teacher_disagreement_score":0.066088654,"about_ca_system_score_codex":0.00004165007,"about_ca_system_score_gemma":0.0000025875102,"threshold_uncertainty_score":0.4829372},"labels":[],"label_agreement":null},{"id":"W2151815565","doi":"10.1128/aem.01066-14","title":"Ether- and Ester-Bound <i>iso</i> -Diabolic Acid and Other Lipids in Members of Acidobacteria Subdivision 4","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":149,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of Environmental Health Sciences; National Park Service; Bundesministerium für Bildung und Forschung","keywords":"Acidobacteria; Ether; Chemistry; Glycerol; Biochemistry; Palmitic acid; Biology; Organic chemistry; Fatty acid; Firmicutes","score_opus":0.004480659454150798,"score_gpt":0.18287914637417388,"score_spread":0.17839848692002308,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151815565","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981271,0.000104931976,0.000009798648,0.000054201595,0.000052089938,0.00016214108,0.000031515665,0.000007587804,0.001450622],"genre_scores_gemma":[0.9985554,0.00017505161,0.0002068099,0.000954916,0.000014878207,0.000008848631,0.000045879126,0.000013604114,0.000024560879],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989695,0.0001971149,0.00022320819,0.00033081858,0.00002031856,0.00025906306],"domain_scores_gemma":[0.99954295,0.00012214015,0.000085976804,0.00018700467,3.9209363e-7,0.00006154627],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027723043,0.00018408119,0.0003060657,0.000035323363,0.000112537055,0.0000069698513,0.00012107183,0.00022692031,0.00071538915],"category_scores_gemma":[0.0000046726263,0.00016954093,0.000018317633,0.00004087452,0.0012245206,0.000045465942,0.00045739688,0.00021337322,0.00003337761],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054181102,0.000063750005,0.088524394,0.0000104565415,0.000008529953,2.2810138e-7,0.0004876617,0.00000405815,0.90740144,0.0002377346,0.000057270765,0.0031502882],"study_design_scores_gemma":[0.005072891,0.0011285633,0.6802291,0.00003947686,0.000068679954,0.00020552793,0.0014988866,0.00010187409,0.2048716,0.0056749205,0.09994148,0.0011669626],"about_ca_topic_score_codex":0.00021594598,"about_ca_topic_score_gemma":0.0004204172,"teacher_disagreement_score":0.70252985,"about_ca_system_score_codex":0.000023629527,"about_ca_system_score_gemma":0.0000016887686,"threshold_uncertainty_score":0.78330094},"labels":[],"label_agreement":null},{"id":"W2152178805","doi":"10.1128/aem.01737-15","title":"Patterns of Endemism and Habitat Selection in Coalbed Microbial Communities","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Hydrocarbon exploration and reservoir analysis","field":"Engineering","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Innovates; University of British Columbia","funders":"","keywords":"Metagenomics; Ecology; Biology; Population; Endemism; Coalbed methane; Habitat; Microbial mat; Microbial population biology; Environmental science; Coal; Coal mining; Geography; Paleontology","score_opus":0.008296025677434456,"score_gpt":0.1736161175086134,"score_spread":0.16532009183117893,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152178805","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992177,0.00020100927,0.00022300176,0.00001774459,0.000020026873,0.000056372577,0.000022057693,0.000014938243,0.00022713734],"genre_scores_gemma":[0.9994072,0.00033156117,0.00007091366,0.000039752285,0.000009211452,0.0000069217785,0.00011095066,0.000008186566,0.00001532824],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996603,0.00002167611,0.00013535787,0.00006994345,0.000014740025,0.00009799769],"domain_scores_gemma":[0.99989015,0.000014904146,0.000017056129,0.00004257391,9.501169e-7,0.000034343808],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005841039,0.00008126927,0.00014563232,0.00006253999,0.000017122184,0.000003965321,0.000034351295,0.00007689545,0.000014115146],"category_scores_gemma":[5.1790835e-7,0.000078732344,0.00001230535,0.000027172186,0.00007278568,0.000024075496,0.00003628065,0.000086732856,0.0000034543875],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009685188,0.000021825723,0.0426769,0.00001654783,0.000025814565,3.856881e-7,0.0013995403,0.0020718407,0.9533816,0.00003158792,0.00004975575,0.00031451546],"study_design_scores_gemma":[0.014069092,0.00063109957,0.11502476,0.000107220905,0.00022862334,0.00037165932,0.05975337,0.039993692,0.7460259,0.0010455234,0.020519925,0.002229096],"about_ca_topic_score_codex":0.000063407824,"about_ca_topic_score_gemma":0.0003556238,"teacher_disagreement_score":0.20735566,"about_ca_system_score_codex":0.000026381978,"about_ca_system_score_gemma":0.000002062483,"threshold_uncertainty_score":0.32106116},"labels":[],"label_agreement":null},{"id":"W2152186046","doi":"10.1128/aem.02591-09","title":"Correlation of the Capsular Phenotype in <i>Propionibacterium freudenreichii</i> with the Level of Expression of <i>gtf</i> , a Unique Polysaccharide Synthase-Encoding Gene","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Phenotype; Propionibacterium freudenreichii; Biology; Correlation; Gene; Genetics; Gene expression; Computational biology; Molecular biology; Bacteria; Mathematics","score_opus":0.005483689881408645,"score_gpt":0.17580845304184436,"score_spread":0.1703247631604357,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152186046","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989273,0.00006179134,0.0005945186,0.00008232129,0.000060738745,0.00016624304,0.00006917252,0.0000012412686,0.000036694793],"genre_scores_gemma":[0.99945956,0.00006932026,0.00021032771,0.000078634344,0.000024180896,0.000008820888,0.00010810348,0.000007956384,0.000033097956],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99954164,0.00003226599,0.00016346035,0.00015784524,0.000028388014,0.00007637257],"domain_scores_gemma":[0.9996093,0.000007621419,0.00017183849,0.00019370943,0.0000058789255,0.000011630968],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000084373234,0.00008166216,0.0001060376,0.00001659629,0.00003480163,0.0000015888799,0.00009679369,0.000104881125,0.000010691945],"category_scores_gemma":[0.000004212841,0.000049299295,0.000021037908,0.000037554873,0.00025967794,0.0000033043536,0.00008421364,0.000097841796,2.684047e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058326114,0.000048653386,0.0077016326,0.000011042536,0.00000770519,5.3548785e-8,0.0001289964,0.000036656584,0.9917988,0.000055518794,0.000013028176,0.0001395648],"study_design_scores_gemma":[0.0002881093,0.000045572335,0.020603377,0.000008560921,0.000009953299,0.000011466212,0.00012412693,0.0000040698096,0.97848463,0.000008912457,0.00035550626,0.0000557326],"about_ca_topic_score_codex":0.000016188475,"about_ca_topic_score_gemma":0.000020516303,"teacher_disagreement_score":0.01331421,"about_ca_system_score_codex":0.00000369036,"about_ca_system_score_gemma":0.000012086754,"threshold_uncertainty_score":0.20103669},"labels":[],"label_agreement":null},{"id":"W2152206417","doi":"10.1128/aem.02521-10","title":"Inhibitory Spectra and Modes of Antimicrobial Action of Gallotannins from Mango Kernels (<i>Mangifera indica</i>L.)","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Tannin, Tannase and Anticancer Activities","field":"Immunology and Microbiology","cited_by":128,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Salmonella enterica; Bacillus cereus; Chemistry; Microbiology; Listeria monocytogenes; Bacteria; Campylobacter jejuni; Escherichia coli; Antimicrobial; Lactobacillus plantarum; Biology; Lactic acid; Biochemistry","score_opus":0.01463447282889725,"score_gpt":0.18401157425679582,"score_spread":0.16937710142789858,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152206417","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967083,0.0015082493,0.000043398195,0.000016580749,0.00012071853,0.00015731688,0.00051342556,0.000019926301,0.00091209414],"genre_scores_gemma":[0.9984638,0.0008839498,0.00020471697,0.00008743488,0.000029449062,0.000007834733,0.00021152098,0.000018297489,0.00009298665],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990199,0.000049142494,0.00030380284,0.0003556162,0.000014949153,0.00025655385],"domain_scores_gemma":[0.99957156,0.00005021007,0.00018909803,0.00016162165,0.0000026541209,0.000024826571],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000056635174,0.00021641786,0.000420517,0.00008594214,0.00008118678,0.0000028814482,0.00009954992,0.00027593866,0.00031530636],"category_scores_gemma":[0.0000013883006,0.00020134123,0.000057348727,0.000032391992,0.0013303285,0.00006611648,0.0001356883,0.00018097965,0.000019105888],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026667747,0.00021047785,0.011249759,0.000027062764,0.00019641042,0.0000021915355,0.0013821438,5.3831855e-7,0.98474467,0.00045222184,0.00015703446,0.0013108168],"study_design_scores_gemma":[0.0010375481,0.00014796587,0.030215064,0.000025161487,0.000076255994,0.000044229975,0.0012817129,4.781269e-7,0.9661253,0.00021305763,0.00064294675,0.00019029336],"about_ca_topic_score_codex":0.00022587772,"about_ca_topic_score_gemma":0.000013215688,"teacher_disagreement_score":0.018965304,"about_ca_system_score_codex":0.000018181847,"about_ca_system_score_gemma":0.000011597438,"threshold_uncertainty_score":0.8210457},"labels":[],"label_agreement":null},{"id":"W2152325693","doi":"10.1128/aem.03094-09","title":"Stable Isotope Probing Analysis of the Diversity and Activity of Methanotrophic Bacteria in Soils from the Canadian High Arctic","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":113,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University; National Research Council Canada; Biotechnology Research Institute","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Stable-isotope probing; Methanotroph; 16S ribosomal RNA; Temperature gradient gel electrophoresis; Biology; Bacteria; Permafrost; Soil water; Environmental chemistry; Microorganism; Ecology; Anaerobic oxidation of methane; Chemistry; Genetics; Methane","score_opus":0.005305901512389406,"score_gpt":0.1593544061268107,"score_spread":0.1540485046144213,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152325693","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99935484,0.00002848095,0.0000023048513,0.00010782821,0.000047078694,0.00018491659,0.00016410326,0.0000011658988,0.00010927227],"genre_scores_gemma":[0.99972147,0.00004566739,0.0000796451,0.00008610472,0.0000044385915,0.0000041232406,0.000034804496,0.0000041383987,0.00001963732],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99935406,0.00006644953,0.00012979023,0.00023041748,0.00003961943,0.00017968382],"domain_scores_gemma":[0.99957705,0.00007039903,0.00009957867,0.00020289839,5.907204e-7,0.00004948693],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018007992,0.0001019655,0.00021656298,0.00003181805,0.00025290743,0.000004510512,0.00017302168,0.00011471962,0.0009086083],"category_scores_gemma":[0.0000028850723,0.00006183498,0.000034692708,0.00015342163,0.0006764985,0.000030552597,0.00066232524,0.00021920388,0.0000030810156],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000105210065,0.000022202239,0.2754759,0.0000017739937,0.000073619776,2.2179917e-7,0.0006300626,0.00023309035,0.7232544,0.000029148088,0.0000016020535,0.00026749814],"study_design_scores_gemma":[0.00024465137,0.000015368374,0.9685767,0.0000026681996,0.00016742203,0.0000014697137,0.00009937075,0.00010819009,0.03022379,0.0003070066,0.00016766696,0.00008567669],"about_ca_topic_score_codex":0.26223812,"about_ca_topic_score_gemma":0.18879811,"teacher_disagreement_score":0.6931008,"about_ca_system_score_codex":0.000057930567,"about_ca_system_score_gemma":0.000005869872,"threshold_uncertainty_score":0.9948624},"labels":[],"label_agreement":null},{"id":"W2152499451","doi":"10.1128/aem.05367-11","title":"Staphylococcus epidermidis Bacteriophages from the Anterior Nares of Humans","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Dermatology and Skin Diseases","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Anterior nares; Lytic cycle; Staphylococcus epidermidis; Microbiology; Biology; Virulence; Colonization; Staphylococcus; Micrococcaceae; Bacteriophage; Staphylococcus aureus; Bacteria; Virology; Escherichia coli; Virus; Genetics; Methicillin-resistant Staphylococcus aureus","score_opus":0.01018549628735341,"score_gpt":0.19634549857216152,"score_spread":0.1861600022848081,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152499451","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960526,0.0023508933,0.000008505095,0.00007440472,0.000042846612,0.00017342082,0.00022323632,0.000011017302,0.0010630318],"genre_scores_gemma":[0.99837893,0.00034743155,0.00015034367,0.00087641994,0.000024973564,0.000015056338,0.00015440266,0.000008720771,0.00004371557],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994504,0.000028513528,0.00017704157,0.00018709553,0.00001673576,0.0001402393],"domain_scores_gemma":[0.999655,0.00005578252,0.00006315255,0.00018261306,0.0000011955707,0.00004226014],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000030739902,0.00011364823,0.00024629355,0.000017524151,0.000063176165,0.0000016963054,0.000075166165,0.00008694928,0.00073106226],"category_scores_gemma":[0.0000026769776,0.00007387836,0.00005100528,0.00001338243,0.0006865514,0.000014001381,0.000076636585,0.000074438256,0.00003369165],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016157175,0.00012844618,0.18890981,0.000011640183,0.00008371623,0.00001619642,0.00062475435,2.0534948e-8,0.80814356,0.00002712955,0.0007282995,0.0011648501],"study_design_scores_gemma":[0.00067670905,0.000065202716,0.8843988,0.00001531464,0.00008488463,0.000055123528,0.0008956914,3.0459947e-7,0.11175065,0.00021741303,0.0017594516,0.00008044888],"about_ca_topic_score_codex":0.000045490935,"about_ca_topic_score_gemma":0.0000066298676,"teacher_disagreement_score":0.6963929,"about_ca_system_score_codex":0.0000059461368,"about_ca_system_score_gemma":0.000006105435,"threshold_uncertainty_score":0.8004619},"labels":[],"label_agreement":null},{"id":"W2152667228","doi":"10.1128/aem.01412-06","title":"Longitudinal Emergence and Distribution of <i>Escherichia coli</i> O157 Genotypes in a Beef Feedlot","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"U.S. Department of Agriculture","keywords":"Feedlot; Feces; Beef cattle; Pulsed-field gel electrophoresis; Animal science; Biology; Veterinary medicine; Escherichia coli; Strain (injury); Water tanks; Microbiology; Genotype; Environmental science; Anatomy; Genetics; Environmental engineering","score_opus":0.0043461873710197675,"score_gpt":0.19652800735059978,"score_spread":0.19218181997958,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152667228","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99699825,0.0023557479,0.00009942228,0.000039966973,0.000016780117,0.00015523711,0.000106543,0.0000028680367,0.00022519323],"genre_scores_gemma":[0.99799514,0.001249295,0.00017717305,0.000035792353,0.000031950767,0.000026529924,0.0004278883,0.000007841527,0.000048363025],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992902,0.000025475565,0.00016032127,0.00028655888,0.000027470662,0.00020996678],"domain_scores_gemma":[0.999819,0.000010033353,0.000045733846,0.000094176015,0.0000031510829,0.000027910706],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008015347,0.000121796955,0.0001535005,0.000016096736,0.0000522801,0.0000035847766,0.00006032094,0.00010038797,0.000008804438],"category_scores_gemma":[0.000004065218,0.00011663034,0.000019487505,0.00004163341,0.00040388448,0.0000021385197,0.00019581206,0.0000691042,0.0000017720698],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059994672,0.00007222846,0.102184996,0.000014259844,0.000017157121,6.74109e-7,0.000015066871,0.000013152576,0.89704907,0.00016436871,0.00014571355,0.00026332872],"study_design_scores_gemma":[0.00065357966,0.00020063527,0.7852014,0.0000045743764,0.00001228784,0.000011435266,0.00013358479,0.000007613305,0.20867778,0.00010917762,0.0048101563,0.00017781604],"about_ca_topic_score_codex":0.00010125226,"about_ca_topic_score_gemma":0.00012208734,"teacher_disagreement_score":0.68837124,"about_ca_system_score_codex":0.000011512516,"about_ca_system_score_gemma":0.000008125356,"threshold_uncertainty_score":0.4756047},"labels":[],"label_agreement":null},{"id":"W2152762034","doi":"10.1128/aem.01362-10","title":"Identification and Characterization of a Novel CprA Reductive Dehalogenase Specific to Highly Chlorinated Phenols from <i>Desulfitobacterium hafniense</i> Strain PCP-1","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Pentachlorophenol; Corrinoid; Chemistry; Cofactor; Phenols; Chlorophenol; Reductive dechlorination; Dehalogenase; Molecular mass; Polyacrylamide gel electrophoresis; Halogenation; Oxidoreductase; Biochemistry; Chromatography; Stereochemistry; Enzyme; Organic chemistry; Phenol; Biodegradation","score_opus":0.005763426543278567,"score_gpt":0.17422806671921165,"score_spread":0.16846464017593307,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152762034","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99672097,0.000006293874,0.00015050468,0.00019747046,0.00023126404,0.00041026314,0.002196083,0.000017469254,0.000069691945],"genre_scores_gemma":[0.9974946,0.00007194913,0.0007092987,0.00019968998,0.000054150354,0.000012249969,0.0013897541,0.000015166041,0.00005317525],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988503,0.00001941801,0.0003204699,0.00052810623,0.000059353424,0.00022235869],"domain_scores_gemma":[0.99948204,0.000021115886,0.0001730336,0.00020173591,0.0000029106582,0.00011913872],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011599043,0.00019437364,0.00020237041,0.000039271246,0.00008398095,0.000022466846,0.00012765535,0.00016343303,0.00051767903],"category_scores_gemma":[0.0000041831763,0.00018421635,0.000022730352,0.000090599206,0.0004520514,0.00009162159,0.00017595197,0.00012707003,0.00013149163],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000068366666,0.0001746477,0.0020994926,0.0000025168388,0.000011287082,5.558004e-7,0.00042487343,0.000001023379,0.9935592,0.000041654122,0.000048310692,0.0035680851],"study_design_scores_gemma":[0.00053364126,0.000047669608,0.20242408,0.0000026242178,0.000009378833,0.000012081599,0.00010908662,0.0000056035265,0.792504,0.00002136989,0.0041468334,0.00018358932],"about_ca_topic_score_codex":0.000038052058,"about_ca_topic_score_gemma":0.000027025626,"teacher_disagreement_score":0.20105515,"about_ca_system_score_codex":0.000045531215,"about_ca_system_score_gemma":0.0000035029755,"threshold_uncertainty_score":0.7512125},"labels":[],"label_agreement":null},{"id":"W2152836285","doi":"10.1128/aem.01444-12","title":"Recovery of Phenotypes Obtained by Adaptive Evolution through Inverse Metabolic Engineering","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fondation Chalmers; Novo Nordisk Fonden; Knut och Alice Wallenbergs Stiftelse","keywords":"Phenotype; Adaptive evolution; Metabolic engineering; Biology; Computational biology; Synthetic biology; Evolutionary biology; Biological system; Genetics; Gene","score_opus":0.0030707623335001254,"score_gpt":0.18670770941227163,"score_spread":0.1836369470787715,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152836285","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9774377,0.0068159793,0.015242183,0.0000059532276,0.00009003287,0.00010056499,0.00008021704,0.000006674821,0.00022070987],"genre_scores_gemma":[0.9970045,0.000595134,0.0019501258,0.000054429904,0.00007730528,0.000011362937,0.00024642184,0.00001428413,0.00004641433],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994931,0.000009367964,0.00011619058,0.00015920174,0.000017570157,0.00020454348],"domain_scores_gemma":[0.999814,0.0000069209436,0.000034954905,0.0001039632,0.0000014656132,0.000038724855],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000047445385,0.00012242892,0.00013102134,0.000015905118,0.000023049723,0.000001499663,0.000047614016,0.00011422562,0.000015034912],"category_scores_gemma":[0.000002795492,0.00012245504,0.00003291796,0.00002127144,0.000073817915,0.0000040919595,0.000076019816,0.00004733904,0.000005805045],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028250803,0.00003607391,0.00094089034,0.000006553242,0.000053099207,4.5826138e-8,0.00006831135,0.00027545152,0.9975602,0.00023276536,0.00030295725,0.00049538654],"study_design_scores_gemma":[0.00040091158,0.00009727812,0.0037473857,0.0000026377645,0.000032757074,0.000015594846,0.00022720273,0.000030735697,0.9696638,0.000025628859,0.025568932,0.00018711018],"about_ca_topic_score_codex":0.0000090494195,"about_ca_topic_score_gemma":8.9220293e-7,"teacher_disagreement_score":0.02789639,"about_ca_system_score_codex":0.0000111643285,"about_ca_system_score_gemma":0.0000033733318,"threshold_uncertainty_score":0.49935716},"labels":[],"label_agreement":null},{"id":"W2152966158","doi":"10.1128/aem.70.3.1297-1306.2004","title":"Novel Pathway of Salicylate Degradation by <i>Streptomyces</i> sp. Strain WA46","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":91,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Kaken Pharmaceutical","keywords":"Biology; Plasmid; Biochemistry; DNA ligase; Escherichia coli; Streptomyces; Molecular biology; Gene; Bacteria; Genetics","score_opus":0.005481737248315426,"score_gpt":0.1793790356321372,"score_spread":0.17389729838382176,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152966158","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99759144,0.0004075993,0.000067048735,0.0006486056,0.000040802774,0.00025525043,0.00067213835,0.000015921243,0.00030121236],"genre_scores_gemma":[0.9963104,0.0002075546,0.0016150738,0.0006461765,0.000045875695,0.0000013201087,0.0009937147,0.000013490577,0.00016636874],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992567,0.000006657755,0.00021533086,0.00030135163,0.00003284416,0.00018711654],"domain_scores_gemma":[0.9997081,0.0000121003895,0.00008591478,0.00013429986,0.0000024723288,0.000057070512],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006544552,0.00015205184,0.00024644705,0.000031590393,0.000044020864,0.000003683037,0.000049811686,0.00014390878,0.00009963606],"category_scores_gemma":[0.0000030369993,0.00011777916,0.00004210814,0.000040642102,0.00025446663,0.000023033142,0.000047848436,0.000112098336,0.000017996577],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000061862294,0.00019597332,0.00015700671,0.000025666743,0.00003652304,0.0000012243579,0.000048580994,9.4458807e-7,0.9927169,0.00017617493,0.00026848703,0.0063106357],"study_design_scores_gemma":[0.001359072,0.0001351126,0.0010250864,0.000015384541,0.00003605461,0.00011521906,0.00009998427,3.7523398e-7,0.9835776,0.00005709039,0.013450024,0.00012901681],"about_ca_topic_score_codex":0.000039591177,"about_ca_topic_score_gemma":0.0000026358107,"teacher_disagreement_score":0.013181537,"about_ca_system_score_codex":0.000042835443,"about_ca_system_score_gemma":0.000012280284,"threshold_uncertainty_score":0.48028946},"labels":[],"label_agreement":null},{"id":"W2153088242","doi":"10.1128/aem.66.9.3924-3930.2000","title":"Additional Evidence that Juvenile Oyster Disease Is Caused by a Member of the <i>Roseobacter</i> Group and Colonization of Nonaffected Animals by <i>Stappia stellulata</i> -Like Strains","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Marine Bivalve and Aquaculture Studies","field":"Environmental Science","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"New Hampshire Sea Grant, University of New Hampshire; Killam Trusts","keywords":"Biology; Epizootic; Crassostrea; Oyster; Bacteria; Eastern oyster; Microbiology; Zoology; Ecology; Outbreak; Virology","score_opus":0.006375890985622259,"score_gpt":0.1807590875761434,"score_spread":0.17438319659052115,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153088242","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98566276,0.00042677857,0.0000065152917,0.00013901826,0.000016644843,0.00035442857,0.012811951,0.0000072276353,0.0005747043],"genre_scores_gemma":[0.99636084,0.00036984394,0.000035779158,0.0007470349,0.000009006329,0.000034849643,0.0015906516,0.000010677679,0.0008413058],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991179,0.00004773311,0.00020755724,0.00035022097,0.00009171512,0.00018487674],"domain_scores_gemma":[0.99956125,0.00007789826,0.00014671264,0.0001495581,0.0000010946699,0.00006351326],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000052901425,0.00018274973,0.00021789639,0.0000074344257,0.000118533346,0.0000073138112,0.000118438824,0.0000763844,0.015224743],"category_scores_gemma":[0.000003033161,0.00013153085,0.00004651129,0.00005687845,0.0008848624,0.00006611626,0.00021662949,0.000074314165,0.000020531008],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049750222,0.00010246473,0.020675208,0.000021594135,0.000029475426,3.957261e-7,0.00021278112,0.0000023147402,0.884312,0.0000059089316,0.09343493,0.001153179],"study_design_scores_gemma":[0.0014887865,0.00024645118,0.4057811,0.00008404354,0.00016658807,0.000017904635,0.0002857163,0.00002337358,0.07237101,0.00009162504,0.51887697,0.0005664547],"about_ca_topic_score_codex":0.000038215218,"about_ca_topic_score_gemma":0.00001980137,"teacher_disagreement_score":0.81194097,"about_ca_system_score_codex":0.000028298937,"about_ca_system_score_gemma":0.0000030278507,"threshold_uncertainty_score":0.98567545},"labels":[],"label_agreement":null},{"id":"W2153144359","doi":"10.1128/aem.69.12.7310-7318.2003","title":"Seasonal Changes in the Rhizosphere MicrobialCommunities Associated with Field-Grown Genetically ModifiedCanola ( <i>Brassicanapus</i> )","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Genetically Modified Organisms Research","field":"Agricultural and Biological Sciences","cited_by":199,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Rhizosphere; Canola; Biology; Microbial population biology; Growing season; Agronomy; Terminal restriction fragment length polymorphism; Ecosystem; Botany; Ecology; Bacteria; Restriction fragment length polymorphism; Gene","score_opus":0.009714666589712047,"score_gpt":0.16915045351714064,"score_spread":0.1594357869274286,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153144359","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954512,0.00019911671,0.000003706023,0.0014101159,0.00001543581,0.00028287424,0.00007131197,0.0000135039345,0.0025527275],"genre_scores_gemma":[0.9973714,0.00014950035,0.0001125453,0.0020327386,0.000023368613,0.000045447734,0.0001724531,0.000002767989,0.00008979772],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987954,0.00023748571,0.00013274983,0.0003015179,0.00008493169,0.00044794736],"domain_scores_gemma":[0.99939567,0.0004029584,0.000038323087,0.0000935661,0.000003971926,0.00006553155],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022831978,0.00018843701,0.00018431085,0.000009306587,0.00020788323,0.0000435101,0.0003003412,0.00017322009,0.00058546197],"category_scores_gemma":[0.000013127199,0.00007274222,0.00002487059,0.000115635674,0.00037206,0.000015492978,0.00007837705,0.00028413063,0.000017119053],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025300733,0.00013100567,0.0040549063,0.0000019116394,0.000016776787,0.000005059246,0.00013707644,0.0000026137898,0.9885586,0.00090559176,0.00021116293,0.0059499964],"study_design_scores_gemma":[0.0030173499,0.003314194,0.44659054,0.00005471572,0.000087958666,0.00042242146,0.014392222,0.000022187602,0.47441104,0.0026624834,0.053357124,0.0016677614],"about_ca_topic_score_codex":0.00008598371,"about_ca_topic_score_gemma":0.002222042,"teacher_disagreement_score":0.5141476,"about_ca_system_score_codex":0.00003134542,"about_ca_system_score_gemma":0.000008720263,"threshold_uncertainty_score":0.6410398},"labels":[],"label_agreement":null},{"id":"W2153149087","doi":"10.1128/aem.06791-11","title":"Inactivation of Template-Directed Misfolding of Infectious Prion Protein by Ozone","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Prion Diseases and Protein Misfolding","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency; Provincial Laboratory of Public Health; University of Alberta","funders":"","keywords":"Prion protein; Prion Proteins; Protein folding; Ozone; Computational biology; Chemistry; Biology; Virology; Microbiology; Biochemistry; Medicine","score_opus":0.004696996071302542,"score_gpt":0.16837461804543633,"score_spread":0.16367762197413377,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153149087","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977042,0.0014004267,0.0003293977,0.0000029972518,0.000015895725,0.00024809173,0.000060474424,0.000007690259,0.00023083863],"genre_scores_gemma":[0.99861795,0.00058444386,0.00044209984,0.00002392146,0.000011754895,0.000022980465,0.00026689694,0.000011246549,0.000018707553],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994477,0.000025344983,0.00018277268,0.0002044797,0.000021007434,0.000118663665],"domain_scores_gemma":[0.9997058,0.0000044406793,0.00013889732,0.00011529107,0.0000033802417,0.00003222447],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000059570375,0.00010477883,0.00013794604,0.000027322452,0.000034155586,0.0000013930845,0.000058302725,0.00013357427,0.000054346783],"category_scores_gemma":[0.000004623668,0.00010285192,0.00003266339,0.000028395967,0.0001353997,0.0000028040656,0.000082412764,0.000042222342,0.0000013377038],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011946802,0.00010181303,0.0040721595,0.00002496519,0.000038769384,1.6496197e-7,0.000054524582,9.65169e-7,0.9902391,0.000035126486,0.00005956857,0.0052534025],"study_design_scores_gemma":[0.00049146096,0.00022887341,0.0026624238,0.000009824022,0.00001257061,0.00000766377,0.000068831134,0.0000016067895,0.9944569,0.00008126008,0.0018702934,0.000108296466],"about_ca_topic_score_codex":0.000038985803,"about_ca_topic_score_gemma":0.0000013581362,"teacher_disagreement_score":0.005145106,"about_ca_system_score_codex":0.000009714378,"about_ca_system_score_gemma":0.000006555756,"threshold_uncertainty_score":0.41941798},"labels":[],"label_agreement":null},{"id":"W2153468462","doi":"10.1128/aem.01029-09","title":"Microarray and Real-Time PCR Analyses of the Responses of High-Arctic Soil Bacteria to Hydrocarbon Pollution and Bioremediation Treatments","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":119,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Environment and Climate Change Canada; McGill University; Biotechnology Research Institute","funders":"Eurostars; Natural Sciences and Engineering Research Council of Canada","keywords":"Bioremediation; Environmental chemistry; Microbial population biology; Soil microbiology; Biology; Soil water; Bacteria; Environmental science; Microbiology; Ecology; Chemistry; Contamination","score_opus":0.007555031752721464,"score_gpt":0.20988870940187832,"score_spread":0.20233367764915686,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153468462","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993292,0.000044762055,0.0000021949131,0.00021063774,0.000025006997,0.00020690929,0.00008410621,0.0000046845644,0.00009251063],"genre_scores_gemma":[0.9990673,0.00024934582,0.00024545708,0.0002758016,0.0000073283854,0.0000041106546,0.00009287723,0.000005193202,0.00005257277],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992239,0.0001493621,0.000203025,0.00023812792,0.000024178105,0.0001613938],"domain_scores_gemma":[0.9995855,0.000061783714,0.0001222771,0.00018486241,9.364573e-7,0.000044636054],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000104279316,0.00014110302,0.00024716198,0.000038773454,0.00012084095,0.000002874192,0.000099682526,0.00012752727,0.00020685613],"category_scores_gemma":[0.000005908124,0.000107208536,0.0000246789,0.0000646883,0.0006482115,0.000029822126,0.0001971028,0.00006683203,0.000010926576],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017593296,0.00008651493,0.011188609,0.0000041448197,0.000024550045,1.670252e-7,0.0002914074,0.00001976965,0.9873214,0.000018088322,0.00004344046,0.0008259954],"study_design_scores_gemma":[0.00039378533,0.0002958119,0.6775587,0.0000047874173,0.00004743847,0.000014720151,0.000050135885,0.0000033254023,0.32107747,0.0004024036,0.00006491797,0.00008650795],"about_ca_topic_score_codex":0.0006155321,"about_ca_topic_score_gemma":0.00008385791,"teacher_disagreement_score":0.6663701,"about_ca_system_score_codex":0.000047457008,"about_ca_system_score_gemma":0.0000035470648,"threshold_uncertainty_score":0.43718374},"labels":[],"label_agreement":null},{"id":"W2153476889","doi":"10.1128/aem.00998-13","title":"Transcriptome Sequencing (RNA-seq) Analysis of the Effects of Metal Nanoparticle Exposure on the Transcriptome of Chlamydomonas reinhardtii","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Nanoparticles: synthesis and applications","field":"Materials Science","cited_by":129,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University; Université de Montréal","funders":"","keywords":"Transcriptome; Chlamydomonas reinhardtii; Gene; Biology; Chlamydomonas; RNA-Seq; RNA; Gene expression; Genetics; Cell biology","score_opus":0.007034380666456285,"score_gpt":0.17714610101590847,"score_spread":0.17011172034945218,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153476889","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989659,0.00022044887,0.00001888411,0.00015969912,0.000039376082,0.00043081882,0.00009058409,0.0000064876936,0.00006776611],"genre_scores_gemma":[0.9996469,0.000035694233,0.000065050444,0.00011513446,0.0000062137988,0.00009150673,0.0000063642465,0.000008752795,0.00002438262],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990312,0.00009430275,0.0003698697,0.00023210022,0.000079415295,0.00019313436],"domain_scores_gemma":[0.9992467,0.00019832299,0.0001776105,0.00033921175,0.000005275881,0.000032838117],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018734719,0.00013288717,0.00035775284,0.000045151395,0.000089329296,0.000005890027,0.0002484964,0.0000644699,0.00031655954],"category_scores_gemma":[0.000006930467,0.00007567232,0.00014492453,0.0001926665,0.00063949334,0.00003441406,0.000045497938,0.0000609163,0.000014872142],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014158364,0.00010967477,0.00070253067,0.000022483702,0.00012420423,9.3176254e-8,0.00056238205,0.00004279754,0.99630433,0.0018706969,0.000010784195,0.00023584478],"study_design_scores_gemma":[0.00024832072,0.000086226304,0.014575697,0.00001181178,0.0003345877,0.0000016310553,0.00037322394,0.00001953979,0.98407507,0.00015783103,0.000038758968,0.00007728236],"about_ca_topic_score_codex":0.000085429485,"about_ca_topic_score_gemma":0.0000051896104,"teacher_disagreement_score":0.0138731655,"about_ca_system_score_codex":0.000020479341,"about_ca_system_score_gemma":0.000007491547,"threshold_uncertainty_score":0.34661052},"labels":[],"label_agreement":null},{"id":"W2153679197","doi":"10.1128/aem.02756-08","title":"Reciprocal Expression of Integration Host Factor and HU in the Developmental Cycle and Infectivity of <i>Legionella pneumophila</i>","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"National Institute of General Medical Sciences; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biology; Legionella pneumophila; Mutant; Morphogenesis; Infectivity; Cell biology; rpoS; Legionella; Gene; Microbiology; Genetics; Gene expression; Virus; Bacteria; Promoter","score_opus":0.005657944359379305,"score_gpt":0.20389463108418857,"score_spread":0.19823668672480926,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153679197","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99924755,0.00026628585,0.000029936178,0.00007001942,0.0000070170777,0.00015392197,0.000022246688,9.907843e-7,0.00020204569],"genre_scores_gemma":[0.9989541,0.00073202926,0.00010150215,0.00011988296,0.000012993977,0.0000052896507,0.000065616114,0.0000034612845,0.000005115124],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99952143,0.000034971483,0.00012292784,0.00018915658,0.000027120675,0.000104363215],"domain_scores_gemma":[0.999851,0.000017524446,0.000042602238,0.0000654764,0.0000018088525,0.00002160515],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000083466526,0.000087317836,0.00011355166,0.00002461103,0.000038091013,0.0000037156217,0.000049571598,0.00010297412,0.0000012092528],"category_scores_gemma":[0.0000036297624,0.00006164478,0.000012917342,0.000022903732,0.0002512,0.0000036289314,0.00007713214,0.00007268293,3.0784187e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006363952,0.000073055606,0.0093709985,0.0000066159964,0.0000034207444,4.3676016e-7,0.00025751427,4.506122e-7,0.98612416,0.000040256782,0.00001713231,0.0040423092],"study_design_scores_gemma":[0.00044338856,0.00020490686,0.11007522,0.0000076221654,0.0000025062975,0.000038850783,0.00042391723,0.0000023553932,0.88835794,0.00009035006,0.00028208338,0.000070890135],"about_ca_topic_score_codex":0.000011335882,"about_ca_topic_score_gemma":0.000007677834,"teacher_disagreement_score":0.10070422,"about_ca_system_score_codex":0.0000061746773,"about_ca_system_score_gemma":0.0000065301415,"threshold_uncertainty_score":0.25138012},"labels":[],"label_agreement":null},{"id":"W2153685586","doi":"10.1128/aem.70.11.6637-6642.2004","title":"Postprocessing In Vitro Digestion Challenge To Evaluate Survival of <i>Escherichia coli</i> O157:H7 in Fermented Dry Sausages","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Université de Montréal","funders":"","keywords":"Digestion (alchemy); Escherichia coli; Fermentation; Food science; Stomach; Saliva; Gastric emptying; Chemistry; Ingestion; In vitro; Pathogen; Pancreatic juice; Microbiology; Inoculation; Gastric fluid; Gastrointestinal tract; Biology; Chromatography; Biochemistry; Pancreas","score_opus":0.008473308557599602,"score_gpt":0.23709926115924998,"score_spread":0.2286259526016504,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153685586","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980707,0.00091779826,0.000045038414,0.0002239186,0.000031749125,0.00033921024,0.00003958627,0.0000044440144,0.0003275105],"genre_scores_gemma":[0.9979505,0.0010334463,0.00050937466,0.00019604134,0.00002415941,0.000067262234,0.00018184358,0.000016847987,0.00002054609],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989285,0.00005971031,0.000233891,0.00039683405,0.00005456947,0.0003265006],"domain_scores_gemma":[0.999737,0.00001444375,0.000053340988,0.00013562742,0.000004747081,0.000054811822],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021249108,0.0001756258,0.00024901962,0.00006583543,0.00004361134,0.0000052575338,0.000094174415,0.00014228099,0.0000040159375],"category_scores_gemma":[0.000013924839,0.0001733316,0.000025775202,0.000087646775,0.00020639211,0.000003712893,0.00026090778,0.00012930915,0.000004451067],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038048267,0.00021930474,0.004472337,0.000026263931,0.000022836064,0.0000035961252,0.00022141583,0.00013396108,0.9933465,0.000019880097,0.0000026195808,0.0011508064],"study_design_scores_gemma":[0.002616601,0.0004636613,0.07795615,0.000031921005,0.000010155547,0.000004215507,0.0007542126,0.0000065042723,0.91699374,0.00011141152,0.0007694723,0.0002819576],"about_ca_topic_score_codex":0.000055469925,"about_ca_topic_score_gemma":0.000125703,"teacher_disagreement_score":0.07635275,"about_ca_system_score_codex":0.000067621666,"about_ca_system_score_gemma":0.000028466635,"threshold_uncertainty_score":0.70682573},"labels":[],"label_agreement":null},{"id":"W2153825229","doi":"10.1128/aem.72.5.3236-3244.2006","title":"Metal Reduction and Iron Biomineralization by a Psychrotolerant Fe(III)-Reducing Bacterium, <i>Shewanella</i> sp. Strain PV-4","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":141,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Shewanella; Magnetite; Bacteria; Biomineralization; Strain (injury); Shewanella putrefaciens; Extremophile; Mesophile; Shewanella oneidensis; Greigite; Magnetosome; Chemistry; Microbiology; Biology; Microorganism; Materials science; Metallurgy","score_opus":0.0027438830543348894,"score_gpt":0.15916715890448646,"score_spread":0.15642327585015156,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153825229","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979752,0.00023498546,0.00016289434,0.00013962992,0.00012693489,0.00040376768,0.0001685978,0.000027326081,0.00076072075],"genre_scores_gemma":[0.99690795,0.00029966023,0.00042012555,0.00017759111,0.00010234286,0.000019898833,0.0017314517,0.000021244725,0.000319713],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987349,0.00003681172,0.000290354,0.0005674707,0.00005822054,0.0003122454],"domain_scores_gemma":[0.9996758,0.000009363401,0.00011775505,0.00012698042,7.9705245e-7,0.00006926694],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000117603326,0.00024874634,0.00020657208,0.000031499632,0.00017622836,0.00003309934,0.000074228585,0.00017237621,0.00055453513],"category_scores_gemma":[4.896546e-7,0.00022825599,0.000032867814,0.00006565534,0.00044319153,0.00009949319,0.00011356361,0.0000977866,0.000063415806],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003353114,0.00010341854,0.0008343281,0.000010852819,0.0000067959195,8.5978087e-7,0.00010730827,0.0000768057,0.99329144,0.000019235673,0.002928931,0.0025864798],"study_design_scores_gemma":[0.0023451096,0.00022506832,0.012437057,0.000012074163,0.000084217005,0.00031393146,0.0003537795,0.00022281702,0.938275,0.00023234729,0.04464003,0.00085860875],"about_ca_topic_score_codex":0.00061161,"about_ca_topic_score_gemma":0.000030312569,"teacher_disagreement_score":0.055016495,"about_ca_system_score_codex":0.00009348943,"about_ca_system_score_gemma":0.0000025088984,"threshold_uncertainty_score":0.9308009},"labels":[],"label_agreement":null},{"id":"W2153866598","doi":"10.1128/aem.06132-11","title":"Factors Driving Potential Ammonia Oxidation in Canadian Arctic Ecosystems: Does Spatial Scale Matter?","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Environmental chemistry; Soil water; Nitrogen cycle; Arctic; Edaphic; Ecology; Environmental science; Ecosystem; Autotroph; Chemistry; Biology; Nitrogen; Bacteria","score_opus":0.0052238548195283905,"score_gpt":0.1578652563620338,"score_spread":0.1526414015425054,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153866598","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99817,0.000009129785,0.00002021813,0.000037343598,0.00017048865,0.00023878996,0.000042049884,0.000010979126,0.001300995],"genre_scores_gemma":[0.9991515,0.00001735238,0.00009796048,0.0002317376,0.000018516374,0.000016593543,0.00039299822,0.000014988264,0.000058345155],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987593,0.00012340872,0.00023397667,0.00036062242,0.000022355365,0.00050029275],"domain_scores_gemma":[0.999558,0.000026149712,0.00007317275,0.00020088475,6.042396e-7,0.00014119607],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00012907478,0.00020544564,0.00023070523,0.00007212712,0.00021552158,0.000007645219,0.00020970397,0.00023462328,0.011416705],"category_scores_gemma":[0.0000017914433,0.00017160845,0.000033373242,0.00004407101,0.00041894725,0.00007020724,0.0002406516,0.00022890473,0.00064255204],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010778127,0.00004864487,0.49499726,0.0000034797486,0.00000665574,0.000001963551,0.0005025284,0.000007625001,0.5041442,0.000008761992,0.00005405272,0.00021406602],"study_design_scores_gemma":[0.00033090878,0.000054339424,0.9807029,0.0000047874364,0.000012539834,0.000023299403,0.00043531065,0.000016690974,0.016344292,0.0003791604,0.0014460204,0.00024977233],"about_ca_topic_score_codex":0.26602334,"about_ca_topic_score_gemma":0.78596395,"teacher_disagreement_score":0.5199407,"about_ca_system_score_codex":0.00029752532,"about_ca_system_score_gemma":0.000009233421,"threshold_uncertainty_score":0.989487},"labels":[],"label_agreement":null},{"id":"W2153869337","doi":"10.1128/aem.02352-08","title":"Complete Genome of the Broad-Host-Range <i>Erwinia amylovora</i> Phage ΦEa21-4 and Its Relationship to <i>Salmonella</i> Phage Felix O1","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Public Health Agency of Canada; Brock University","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Hospital for Sick Children","keywords":"Genome; Biology; Erwinia; Genetics; Bacteriophage; Gene; Escherichia coli","score_opus":0.008261800265140803,"score_gpt":0.19328695863791015,"score_spread":0.18502515837276934,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153869337","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957722,0.00034110493,0.000033814977,0.0005693364,0.00009365094,0.0005207969,0.00038763546,0.00001963017,0.0022618282],"genre_scores_gemma":[0.9963051,0.00013578811,0.00028471017,0.0025298696,0.000036503574,0.000014164372,0.000062571744,0.000018794837,0.0006124773],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987582,0.00005262103,0.00031528727,0.0004759169,0.000055459077,0.0003425118],"domain_scores_gemma":[0.99943244,0.000053208736,0.00012556413,0.00026529576,0.0000013475363,0.00012214799],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009445404,0.00024949817,0.00026638343,0.000032143278,0.0002717442,0.000020303001,0.00023397646,0.00013034756,0.0005897808],"category_scores_gemma":[0.000003856559,0.00020363585,0.00006552006,0.000109496184,0.0003258332,0.00009233556,0.00033317867,0.00021358495,0.0003525591],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003428109,0.00009520886,0.002265055,0.000005073777,0.000011220037,0.000001724163,0.00041552229,0.000032424763,0.9960544,0.000051532683,0.00033180215,0.0007017448],"study_design_scores_gemma":[0.0009884991,0.00023817005,0.8444519,0.000015256491,0.00006591284,0.00020832797,0.00022806686,0.000014421287,0.09054877,0.000116978525,0.06266203,0.00046167846],"about_ca_topic_score_codex":0.00004510276,"about_ca_topic_score_gemma":0.00002134776,"teacher_disagreement_score":0.90550566,"about_ca_system_score_codex":0.000075153,"about_ca_system_score_gemma":0.0000022695613,"threshold_uncertainty_score":0.83040285},"labels":[],"label_agreement":null},{"id":"W2154086974","doi":"10.1128/aem.67.6.2669-2676.2001","title":"Induction of <i>bphA</i> , Encoding Biphenyl Dioxygenase, in Two Polychlorinated Biphenyl-Degrading Bacteria, Psychrotolerant <i>Pseudomonas</i> Strain Cam-1 and Mesophilic <i>Burkholderia</i> Strain LB400","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biphenyl; Biology; Dioxygenase; Pseudomonas; Bacteria; Mesophile; Strain (injury); Burkholderia; Microbiology; Biochemistry; Chemistry; Enzyme","score_opus":0.008695076937325049,"score_gpt":0.2072922869178927,"score_spread":0.19859720998056765,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154086974","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975709,0.00020775382,0.00001840986,0.00016500168,0.00017268484,0.00058038125,0.00042291306,0.000029654324,0.0008323367],"genre_scores_gemma":[0.9976391,0.001030999,0.00041547028,0.00046785624,0.00006104332,0.000021313399,0.00028104018,0.000028666584,0.000054520817],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99797946,0.00008695621,0.0005533118,0.0007343606,0.00010499181,0.0005408877],"domain_scores_gemma":[0.99935025,0.00004029656,0.00022916598,0.00022014132,0.0000016071598,0.00015854172],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003214323,0.00038290818,0.00045339868,0.00011149784,0.00013070449,0.000024198864,0.00018356729,0.00020224144,0.0008026957],"category_scores_gemma":[0.0000040038294,0.00035973723,0.000055427485,0.00024930242,0.0007126685,0.00015757326,0.00020906229,0.00024249805,0.000036665184],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010212306,0.00016618212,0.024037061,0.000012692774,0.000018452056,0.000008611214,0.0003627748,0.000014982809,0.9655606,0.000037048496,0.0000829858,0.009596466],"study_design_scores_gemma":[0.0068779625,0.0003069835,0.10821739,0.00007206849,0.000048498732,0.0005480577,0.0015833187,0.00007177441,0.86965793,0.00028722634,0.0111557515,0.0011730171],"about_ca_topic_score_codex":0.00029792017,"about_ca_topic_score_gemma":0.00023017326,"teacher_disagreement_score":0.09590267,"about_ca_system_score_codex":0.00012103179,"about_ca_system_score_gemma":0.000008466948,"threshold_uncertainty_score":0.99988544},"labels":[],"label_agreement":null},{"id":"W2154317105","doi":"10.1128/aem.02214-12","title":"Novel System for Efficient Isolation of Clostridium Double-Crossover Allelic Exchange Mutants Enabling Markerless Chromosomal Gene Deletions and DNA Integration","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":122,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"Biology; Genetics; Plasmid; Gene; Marker gene; Mutant","score_opus":0.020233127400521213,"score_gpt":0.2447289886937704,"score_spread":0.2244958612932492,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154317105","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952427,0.0012082205,0.0019158595,0.00006226346,0.00010767705,0.0009410897,0.00036910456,0.000019400508,0.00013366007],"genre_scores_gemma":[0.9979949,0.00025218946,0.0006058904,0.000033642416,0.00019362493,0.00009420284,0.0007578172,0.000025261532,0.000042500546],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99887264,0.000015741307,0.00031896916,0.0003134331,0.00007781239,0.0004014006],"domain_scores_gemma":[0.9995129,0.00007066376,0.000109172885,0.00015968387,0.000013795746,0.00013374438],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002065322,0.00019043357,0.0003230045,0.00010180659,0.00014729424,0.00001155364,0.000048049653,0.0001991419,0.00003721047],"category_scores_gemma":[0.0000047640506,0.00017359151,0.000059311813,0.00007171132,0.00021630991,0.000034265835,0.00010668156,0.00012818856,0.0000073565216],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007526892,0.0002906981,0.00047656152,0.00017788545,0.000057722154,6.734294e-7,0.00027202783,0.000007103489,0.9955317,0.00018499006,0.000021910728,0.0022260724],"study_design_scores_gemma":[0.0046697943,0.000177936,0.0025869654,0.000043928092,0.000111997324,0.000297599,0.0009280035,0.00038082124,0.98978215,0.0000011023077,0.00084837095,0.00017132932],"about_ca_topic_score_codex":0.00002666758,"about_ca_topic_score_gemma":0.0000028042048,"teacher_disagreement_score":0.0057495134,"about_ca_system_score_codex":0.00015955727,"about_ca_system_score_gemma":0.000018492392,"threshold_uncertainty_score":0.7078856},"labels":[],"label_agreement":null},{"id":"W2154360269","doi":"10.1128/aem.66.6.2491-2501.2000","title":"Isolation and Characterization of Strains CVO and FWKO B, Two Novel Nitrate-Reducing, Sulfide-Oxidizing Bacteria Isolated from Oil Field Brine","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mine drainage and remediation techniques","field":"Environmental Science","cited_by":267,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary","funders":"","keywords":"Sulfur; Thiosulfate; Sulfide; Hydrogen sulfide; Nitrate; Nitrite; Sulfate; Chemistry; Inorganic chemistry; Sulfur cycle; Energy source; Tetrathionate; Sulfate-reducing bacteria; Organic chemistry; Coal","score_opus":0.004179148612785177,"score_gpt":0.1820621091342003,"score_spread":0.1778829605214151,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154360269","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99863863,0.00003716073,0.0005306411,0.00007661083,0.000020191581,0.00010553474,0.00012040695,0.000020986501,0.0004498101],"genre_scores_gemma":[0.996592,0.00068535557,0.0016296726,0.0002563241,0.000029015358,0.0000075500716,0.00059520686,0.000011250481,0.00019365903],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992521,0.00001888972,0.00023001466,0.00031686408,0.000031528136,0.0001506227],"domain_scores_gemma":[0.99973035,0.000024885414,0.0000934795,0.000098942386,7.874645e-7,0.000051554278],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000066568784,0.00014545168,0.00017281313,0.00002578611,0.00007985322,0.0000140052125,0.00005136007,0.000117253694,0.001811443],"category_scores_gemma":[0.0000015325625,0.00013766298,0.0000148082545,0.000037187423,0.00021088435,0.00010332558,0.00008229933,0.00008143665,0.000012374073],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029889712,0.0000448419,0.0017775241,0.0000055506816,0.0000102500435,4.928665e-7,0.0003884163,0.000002563505,0.97146714,0.000011795742,0.000013969728,0.026247542],"study_design_scores_gemma":[0.0010613805,0.00016481636,0.069214374,0.000017313816,0.000031832118,0.000035583613,0.0001240662,0.00040926962,0.9267366,0.00012236292,0.0017878549,0.00029455865],"about_ca_topic_score_codex":0.00030863716,"about_ca_topic_score_gemma":0.000022246526,"teacher_disagreement_score":0.06743685,"about_ca_system_score_codex":0.000019376539,"about_ca_system_score_gemma":0.0000017912055,"threshold_uncertainty_score":0.99910104},"labels":[],"label_agreement":null},{"id":"W2154453217","doi":"10.1128/aem.70.1.174-181.2004","title":"Metabolism of 2,2′- and 3,3′-Dihydroxybiphenyl by the Biphenyl Catabolic Pathway of <i>Comamonas testosteroni</i> B-356","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Comamonas testosteroni; Metabolite; Hydroxylation; Chemistry; Biphenyl; Catabolism; Metabolism; Enzyme; Substrate (aquarium); Stereochemistry; Biochemistry; Dioxygenase; Cometabolism; Biotransformation; Organic chemistry; Biology; Bacteria; Bioremediation","score_opus":0.0030418760939088974,"score_gpt":0.15551094845530386,"score_spread":0.15246907236139495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154453217","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997684,0.0009136848,0.00002227418,0.00016313871,0.00004243061,0.00026433577,0.0003613285,0.000009002043,0.0005398244],"genre_scores_gemma":[0.99852127,0.00051006896,0.00024156814,0.0005456807,0.000012866471,0.0000061946753,0.00009619004,0.000012863751,0.00005329102],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99901533,0.00002481061,0.00031471896,0.00032590967,0.00007118798,0.00024806656],"domain_scores_gemma":[0.99950844,0.00003476295,0.00017654916,0.00020676426,0.000001071439,0.00007244132],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013316686,0.00019779567,0.00027480637,0.000020140862,0.0000860587,0.000005524009,0.0001842925,0.00012317664,0.00022495813],"category_scores_gemma":[0.0000029575904,0.00013812903,0.000037731457,0.00007457385,0.0013286235,0.000045439654,0.00029482626,0.00010600472,0.000040986997],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018561514,0.000101703015,0.0041664992,0.0000065078825,0.00001555051,3.223978e-7,0.00035418008,0.000008864194,0.9910085,0.00017964924,0.0002343131,0.003905314],"study_design_scores_gemma":[0.0014601692,0.000093295945,0.025309017,0.000005984805,0.000034761233,0.00005175574,0.00027957713,0.0000029964597,0.94494784,0.00038629406,0.027181411,0.00024688372],"about_ca_topic_score_codex":0.0002082919,"about_ca_topic_score_gemma":0.000032065826,"teacher_disagreement_score":0.04606068,"about_ca_system_score_codex":0.0000327656,"about_ca_system_score_gemma":0.0000061756195,"threshold_uncertainty_score":0.56327385},"labels":[],"label_agreement":null},{"id":"W2154632134","doi":"10.1128/aem.02151-10","title":"<i>Saccharomyces cerevisiae</i> Genome-Wide Mutant Screen for Sensitivity to 2,4-Diacetylphloroglucinol, an Antibiotic Produced by <i>Pseudomonas fluorescens</i>","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Brain Institute; University of Toronto","funders":"National Research Foundation of Korea; National Institute of Environmental Health Sciences; National Research Foundation","keywords":"Biology; Pseudomonas fluorescens; Microbiology; Mutant; Saccharomyces cerevisiae; Yeast; Bacteria; Genetics; Gene","score_opus":0.006329884254220601,"score_gpt":0.18324362626547797,"score_spread":0.17691374201125737,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154632134","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958939,0.00006860024,0.000011646211,0.00060553843,0.00012965726,0.0007165943,0.0024649384,0.000047828293,0.00006131271],"genre_scores_gemma":[0.99575984,0.00008936603,0.00038123791,0.0012464061,0.000153813,0.000021753145,0.002295096,0.000004880312,0.00004762865],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985646,0.000054526037,0.00024294309,0.000637194,0.000040091487,0.00046066876],"domain_scores_gemma":[0.9994052,0.00017038663,0.00009004295,0.00014710428,0.000007980833,0.00017925783],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002402171,0.00027634637,0.000315643,0.0000163466,0.00038231455,0.00005913579,0.00019263456,0.0001862575,0.00011705739],"category_scores_gemma":[0.000011575101,0.00014044427,0.00006804371,0.00006630497,0.00017969917,0.00010496219,0.00016557153,0.000255541,0.00006558597],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008372725,0.00022184853,0.002434084,0.0000049605233,0.000021336993,0.0000015864088,0.00003967643,7.350727e-7,0.9884559,0.000016684282,0.00066786655,0.008051603],"study_design_scores_gemma":[0.000285787,0.0003180877,0.022320315,0.0000055523974,0.000022139584,0.00012238098,0.00025169132,0.00000506053,0.9025228,0.000012769926,0.0737713,0.00036209755],"about_ca_topic_score_codex":0.00020151876,"about_ca_topic_score_gemma":0.00029305776,"teacher_disagreement_score":0.08593307,"about_ca_system_score_codex":0.000023411832,"about_ca_system_score_gemma":0.000003873326,"threshold_uncertainty_score":0.5727151},"labels":[],"label_agreement":null},{"id":"W2154659630","doi":"10.1128/aem.72.4.2988-2996.2006","title":"Peptidoglycan Hydrolase Fusions Maintain Their Parental Specificities","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":114,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"National Institute of Allergy and Infectious Diseases; U.S. Department of Agriculture","keywords":"Lytic cycle; Peptidoglycan; Lysostaphin; Microbiology; Lysin; Biology; Antimicrobial; Staphylococcus aureus; Streptococcus agalactiae; Mastitis; Antimicrobial peptides; Bacteriophage; Bacteria; Virology; Escherichia coli; Biochemistry; Streptococcus; Virus; Genetics; Gene","score_opus":0.002717539966271089,"score_gpt":0.15133331178533904,"score_spread":0.14861577181906796,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154659630","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98203033,0.000060671628,0.00008546639,0.00011686226,0.000116174524,0.00019287874,0.0003374053,0.000042731874,0.017017486],"genre_scores_gemma":[0.99737984,0.000074196454,0.00032264768,0.00037029144,0.00009088583,0.000019601355,0.00061106286,0.000024132627,0.0011073519],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989266,0.000026015048,0.00022537778,0.00041686275,0.000030954212,0.00037422206],"domain_scores_gemma":[0.9996435,0.000027079577,0.00006893616,0.00018415945,4.039859e-7,0.000075926226],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000049227212,0.00023760769,0.0001860682,0.000030531173,0.00029651463,0.000028376264,0.000135036,0.000110290326,0.006238585],"category_scores_gemma":[4.9911824e-7,0.00020755133,0.000065581866,0.000042775642,0.0006476613,0.00007251495,0.00032734338,0.00015984433,0.00080135016],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020764059,0.00013620865,0.002711564,0.0000015284659,0.000008999815,0.0000052750515,0.00012819692,0.000035801615,0.99205095,0.0002296016,0.002155654,0.002515483],"study_design_scores_gemma":[0.0016354508,0.00024494992,0.27860132,0.000013916836,0.000057974747,0.0010870368,0.0054201162,0.0000707227,0.2341334,0.0021024921,0.47542354,0.0012090682],"about_ca_topic_score_codex":0.0004530476,"about_ca_topic_score_gemma":0.00017741161,"teacher_disagreement_score":0.7579175,"about_ca_system_score_codex":0.00014247053,"about_ca_system_score_gemma":0.0000020135553,"threshold_uncertainty_score":0.99997663},"labels":[],"label_agreement":null},{"id":"W2154664546","doi":"10.1128/aem.01253-08","title":"Associations between Antimicrobial Resistance Phenotypes, Antimicrobial Resistance Genes, and Virulence Genes of Fecal <i>Escherichia coli</i> Isolates from Healthy Grow-Finish Pigs","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":118,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; University of Guelph; University of Saskatchewan","funders":"Public Health Agency","keywords":"Virulence; Biology; Antibiotic resistance; Antimicrobial; Phenotype; Gene; Drug resistance; Genotype; Escherichia coli; Genetics; Microbiology; Bacteria","score_opus":0.00548693125619661,"score_gpt":0.1997116212580255,"score_spread":0.19422469000182888,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154664546","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923896,0.0036820357,0.00029256783,0.00031377494,0.00009752491,0.0003108429,0.0027118279,0.000016739294,0.0001850706],"genre_scores_gemma":[0.9873875,0.004271508,0.0045947814,0.0009868788,0.00021572167,0.0000037497475,0.0023800894,0.000031909138,0.00012787849],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980726,0.00009390262,0.0005450257,0.000782689,0.000054499134,0.00045124438],"domain_scores_gemma":[0.9991443,0.000052363237,0.0003424172,0.00034147644,0.000012237102,0.00010720561],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00014468249,0.00034798897,0.00054105517,0.00003560632,0.00022747194,0.000029515193,0.00024371069,0.0004187827,0.000013441279],"category_scores_gemma":[0.000009518816,0.0003718295,0.00007169031,0.0000693402,0.00059864775,0.000012998526,0.00015948439,0.00016509191,0.000006438756],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035229465,0.00010183444,0.025222119,0.000027029717,0.00007953139,0.0000013520345,0.00005267829,0.000001368136,0.9721001,0.00007969553,0.0014825647,0.00049946865],"study_design_scores_gemma":[0.0016477789,0.0002307995,0.2518967,0.0000516568,0.00010759786,0.0000062672284,0.000060503313,8.830666e-7,0.7297026,0.00022450477,0.015412674,0.0006580711],"about_ca_topic_score_codex":0.000040320603,"about_ca_topic_score_gemma":0.000105922256,"teacher_disagreement_score":0.2423975,"about_ca_system_score_codex":0.00004185831,"about_ca_system_score_gemma":0.000042277847,"threshold_uncertainty_score":0.99987334},"labels":[],"label_agreement":null},{"id":"W2154667464","doi":"10.1128/aem.00412-12","title":"Natural Transformation of Gallibacterium anatis","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Plasmid; Biology; Transformation (genetics); Electroporation; Genome; Genetics; DNA; Microbiology; Gene","score_opus":0.005191990728910062,"score_gpt":0.19959107364239373,"score_spread":0.19439908291348368,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154667464","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952921,0.0032386237,0.00005700558,0.000033644916,0.00021165247,0.00016504157,0.00015094264,0.000016165648,0.0008347824],"genre_scores_gemma":[0.9987183,0.00025044804,0.000029406308,0.00007074875,0.000014687085,0.000013022369,0.00076058874,0.000008066589,0.0001347208],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993001,0.000045885234,0.00018269013,0.00012822633,0.000007544841,0.0003355081],"domain_scores_gemma":[0.9997947,0.000030589195,0.000049326667,0.000097224605,0.0000026880318,0.000025447565],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00010780198,0.000114470226,0.00016951814,0.00006827252,0.000090932335,0.0000032222324,0.0000567508,0.0001363944,0.00094449776],"category_scores_gemma":[0.00000176422,0.0000987766,0.000044600438,0.000039329017,0.0003337373,0.00007687481,0.000054395558,0.000130647,0.00018129598],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000044784156,0.00014224258,0.0018156287,0.000016688839,0.00005486287,9.173168e-8,0.0003607253,3.1523513e-7,0.99012035,0.0011706523,0.00015525884,0.0061183763],"study_design_scores_gemma":[0.0010914133,0.00007178388,0.029325714,0.000005464093,0.00003733092,0.00016235576,0.0005544986,7.231082e-7,0.9100702,0.00004141963,0.058442295,0.00019681854],"about_ca_topic_score_codex":0.000028830415,"about_ca_topic_score_gemma":0.0000018687624,"teacher_disagreement_score":0.080050185,"about_ca_system_score_codex":0.00002529033,"about_ca_system_score_gemma":0.000005409093,"threshold_uncertainty_score":0.99996877},"labels":[],"label_agreement":null},{"id":"W2154736737","doi":"10.1128/aem.66.7.2773-2782.2000","title":"Characterization of an Atrazine-Degrading<i>Pseudaminobacter</i>sp. Isolated from Canadian and French Agricultural Soils","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pesticide and Herbicide Environmental Studies","field":"Environmental Science","cited_by":180,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Agriculture and Agri-Food Canada; Western University","funders":"","keywords":"Atrazine; Lotus corniculatus; Biology; 16S ribosomal RNA; Plasmid; Botany; Bacteria; Pesticide; Gene; Agronomy; Genetics","score_opus":0.0030331349919200984,"score_gpt":0.15304814625958277,"score_spread":0.15001501126766267,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154736737","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976565,0.00009202183,0.0000038572234,0.00007379305,0.00002784461,0.00020236737,0.00036007512,0.000016406386,0.0015671374],"genre_scores_gemma":[0.99749005,0.00051644363,0.00019286842,0.00034540182,0.000031480962,0.000014225525,0.0012166839,0.000014929957,0.00017793407],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99885803,0.000030738527,0.0002505342,0.00046269418,0.000051854364,0.0003461386],"domain_scores_gemma":[0.9995676,0.000018544075,0.00006985161,0.0001424273,4.4763178e-7,0.00020107893],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00004515627,0.00024435399,0.00026520027,0.000024554798,0.0001929683,0.000015011331,0.000117224154,0.0001520471,0.005590396],"category_scores_gemma":[6.744569e-7,0.00021127007,0.00002699439,0.000050703577,0.00055546244,0.00013949031,0.000094830175,0.000112355054,0.00019183655],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013400512,0.000051568826,0.07184795,0.0000017752611,0.000021990641,0.0000029657501,0.00040226066,0.00000782921,0.9166348,0.0000034741704,0.000033751305,0.010978244],"study_design_scores_gemma":[0.00039734837,0.000119969176,0.9755825,0.000005071145,0.00003055059,0.000039499344,0.0001404184,0.000033389395,0.01987976,0.00007789302,0.0034247348,0.00026888557],"about_ca_topic_score_codex":0.021466374,"about_ca_topic_score_gemma":0.009026144,"teacher_disagreement_score":0.9037345,"about_ca_system_score_codex":0.00010496326,"about_ca_system_score_gemma":0.0000027259837,"threshold_uncertainty_score":0.99531865},"labels":[],"label_agreement":null},{"id":"W2154802156","doi":"10.1128/aem.00926-06","title":"Effect of Sheep Urine Deposition on the Bacterial Community Structure in an Acidic Upland Grassland Soil","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Soil and Water Nutrient Dynamics","field":"Environmental Science","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Northern British Columbia","funders":"","keywords":"Lolium perenne; Microcosm; Biology; Soil water; Biomass (ecology); Grassland; Microbial population biology; Ribosomal Intergenic Spacer analysis; Agronomy; Community structure; Composition (language); Plant community; Soil pH; Botany; Poaceae; Ecology; Bacteria; Ribosomal RNA; Species richness; Biochemistry; Internal transcribed spacer","score_opus":0.002083647477217786,"score_gpt":0.160724684115035,"score_spread":0.1586410366378172,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154802156","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99934065,0.000009155613,0.0000040686687,0.000028438786,0.00004419117,0.00020136313,0.0000982937,0.000007199525,0.0002666179],"genre_scores_gemma":[0.9991397,0.000009615276,0.000013110398,0.00005474527,0.000023406756,0.000010562155,0.000734529,0.0000086937625,0.000005617003],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992597,0.00019292929,0.00015269432,0.00017894869,0.000038803308,0.00017689816],"domain_scores_gemma":[0.9996592,0.000084079766,0.00005526229,0.00017597993,2.188724e-7,0.00002528958],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015195028,0.00014994515,0.00016228395,0.000020354348,0.00012339522,0.0000087311855,0.00013235268,0.00010656907,0.0000914971],"category_scores_gemma":[8.847822e-7,0.00009604617,0.000020329311,0.000036216436,0.00048853084,0.000035858888,0.00012707562,0.00018978628,0.00001269551],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017539476,0.000091681766,0.31682426,0.000005253099,0.000003225579,0.0000010736057,0.00007143972,0.00020694603,0.6817393,0.000021523203,0.000021417176,0.0008385077],"study_design_scores_gemma":[0.0023740912,0.0012078651,0.6196925,0.000009901288,0.000027755037,0.00005355587,0.00011406883,0.0001556559,0.3741349,0.0017834754,0.00017393676,0.0002722952],"about_ca_topic_score_codex":0.00070694316,"about_ca_topic_score_gemma":0.00038453998,"teacher_disagreement_score":0.30760437,"about_ca_system_score_codex":0.000051212734,"about_ca_system_score_gemma":7.1140437e-7,"threshold_uncertainty_score":0.3916649},"labels":[],"label_agreement":null},{"id":"W2154937884","doi":"10.1128/aem.68.6.2690-2698.2002","title":"Development of a Procedure for Discriminating among <i>Escherichia coli</i> Isolates from Animal and Human Sources","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":122,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Agricultural Adaptation Council","keywords":"Biology; Amplified fragment length polymorphism; Escherichia coli; Livestock; Feces; Veterinary medicine; Sewage; Antibiotic resistance; Human feces; Microbiology; Antibiotics; Gene; Genetics; Genetic diversity; Population; Ecology","score_opus":0.013046587099345525,"score_gpt":0.21683114660793507,"score_spread":0.20378455950858954,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154937884","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99889547,0.00040281913,0.000013641725,0.00006311674,0.0000056231556,0.00037434962,0.000074759795,0.000008857445,0.00016137438],"genre_scores_gemma":[0.9962223,0.000075738535,0.00320117,0.00012921929,0.000028648252,0.00008081055,0.00021203779,0.000012401125,0.00003767214],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999366,0.000007130641,0.00017329826,0.00023378374,0.00002376392,0.00019605791],"domain_scores_gemma":[0.99975115,0.000050636863,0.00005538854,0.000058824142,0.000001996509,0.00008197818],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000043447482,0.00011581829,0.00021783105,0.000025413863,0.00011250152,0.0000072437774,0.00003391971,0.00008216927,0.0001155383],"category_scores_gemma":[0.00000468056,0.00009603027,0.000020859923,0.000016591652,0.00023193202,0.000020295112,0.000076603035,0.00007093994,0.0000029647356],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006319867,0.00012282413,0.09245839,0.00008120178,0.00004362861,6.249491e-7,0.0010979904,3.101258e-8,0.9047578,0.00002317166,0.00010258823,0.0012485319],"study_design_scores_gemma":[0.0021875773,0.00049621,0.4639043,0.000057712277,0.00007814476,0.000011614429,0.0021940258,0.000036931106,0.5270907,0.000040219413,0.0036891184,0.00021343266],"about_ca_topic_score_codex":0.000018459825,"about_ca_topic_score_gemma":0.000011567687,"teacher_disagreement_score":0.3776671,"about_ca_system_score_codex":0.000015806536,"about_ca_system_score_gemma":0.000004124921,"threshold_uncertainty_score":0.3916001},"labels":[],"label_agreement":null},{"id":"W2155011096","doi":"10.1128/aem.71.8.4469-4477.2005","title":"Identification and Characterization of Putative Virulence Genes and Gene Clusters in <i>Aeromonas hydrophila</i> PPD134/91","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":99,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Biomedical Research Council; Ministerio de Ciencia y Tecnología; Canadian Institutes of Health Research; Generalitat de Catalunya","keywords":"Virulence; Biology; Aeromonas hydrophila; Microbiology; Genetics; Gene; Pathogen; Bacteria","score_opus":0.003195580375824898,"score_gpt":0.17143140614781663,"score_spread":0.16823582577199173,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155011096","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967211,0.0023684066,0.000091608264,0.0001777814,0.00004542135,0.00031986326,0.00021694721,0.0000114572695,0.000047455145],"genre_scores_gemma":[0.9955539,0.0022687323,0.00006866136,0.00024540533,0.000013029881,0.000020630489,0.0015948102,0.000010877307,0.00022395875],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990965,0.00005167874,0.00027408687,0.00037564646,0.0000102490885,0.00019182978],"domain_scores_gemma":[0.9997237,0.000020268988,0.00013302073,0.000100541714,0.0000026503888,0.000019835752],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009073868,0.00017415009,0.00022742101,0.00007959593,0.00007885146,0.000008158955,0.0000686723,0.00016062331,0.000029767454],"category_scores_gemma":[0.0000012219997,0.00016409854,0.000019150297,0.000041755637,0.000534473,0.00007976181,0.00015169162,0.000090470385,0.000029322699],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000070088805,0.00008190287,0.0020776326,0.000019851974,0.00004566578,7.913731e-7,0.000633417,0.0000021632436,0.98713636,0.00015145396,0.000017251488,0.009763401],"study_design_scores_gemma":[0.0015544035,0.000063431085,0.04258432,0.000010575048,0.00006310436,0.000061728926,0.00046067795,0.000011264849,0.9493785,0.000052722364,0.0055059246,0.000253368],"about_ca_topic_score_codex":0.000008536695,"about_ca_topic_score_gemma":0.000005569553,"teacher_disagreement_score":0.040506687,"about_ca_system_score_codex":0.0000226036,"about_ca_system_score_gemma":0.0000033362453,"threshold_uncertainty_score":0.66917443},"labels":[],"label_agreement":null},{"id":"W2155481565","doi":"10.1128/aem.00031-09","title":"Proteomic and Transcriptomic Analyses Reveal Genes Upregulated by<i>cis</i>-Dichloroethene in<i>Polaromonas</i>sp. Strain JS666","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Chemistry; Biochemistry","score_opus":0.007444552920048475,"score_gpt":0.20769268606420377,"score_spread":0.2002481331441553,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155481565","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979977,0.00043650257,0.000020485437,0.00033873433,0.000034427165,0.0004695505,0.0003511065,0.000028909668,0.00032258642],"genre_scores_gemma":[0.99721575,0.0006002933,0.00037456656,0.0011748781,0.000017510049,0.00000821882,0.00047513764,0.000014659724,0.00011901773],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984757,0.00006439142,0.00035437668,0.00061162974,0.00006642127,0.00042753882],"domain_scores_gemma":[0.9995975,0.000014861425,0.000093476156,0.00016208868,7.6571826e-7,0.00013129925],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00016394923,0.0003000572,0.00032537544,0.000048201156,0.00010481885,0.000022261507,0.00015444329,0.0002295869,0.0005070452],"category_scores_gemma":[0.0000018383262,0.00026588328,0.00003765594,0.00011838777,0.0004875923,0.00008657598,0.00008215818,0.00017537712,0.000076689525],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007555468,0.00011974181,0.0072061284,0.0000038095461,0.000012556735,0.0000031966974,0.00019120566,0.000009962061,0.98302495,0.0000048192396,0.0005375427,0.008810528],"study_design_scores_gemma":[0.0019670085,0.00021766199,0.16217671,0.000009103798,0.000034361005,0.00007507924,0.00012951122,0.00003039089,0.83073497,0.00024838228,0.00385472,0.0005220896],"about_ca_topic_score_codex":0.00008102009,"about_ca_topic_score_gemma":0.000031475098,"teacher_disagreement_score":0.15497059,"about_ca_system_score_codex":0.00009554889,"about_ca_system_score_gemma":0.000004883563,"threshold_uncertainty_score":0.9999793},"labels":[],"label_agreement":null},{"id":"W2155538554","doi":"10.1128/aem.67.1.403-410.2001","title":"Development and Characterization of a Xylose-Dependent System for Expression of Cloned Genes in <i>Bacillus subtilis</i> : Conditional Complementation of a Teichoic Acid Mutant","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":157,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Complementation; Operon; Bacillus subtilis; Repressor; Biology; Xylose; Biochemistry; Regulon; lac operon; Xylose isomerase; Mutant; Molecular biology; Catabolite repression; Gene; Transcription (linguistics); Plasmid; Gene expression; Genetics; Bacteria","score_opus":0.005978955923418731,"score_gpt":0.1857441330056843,"score_spread":0.17976517708226555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155538554","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998399,0.0001492457,0.0007297188,0.000008491654,0.00002312877,0.0003098604,0.00037254475,0.0000019275535,0.0000060793263],"genre_scores_gemma":[0.9965817,0.00027512334,0.0010039987,0.0000130805975,0.000011119932,0.000037790956,0.0020668004,0.000007140636,0.0000032661615],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993356,0.000018094679,0.00031853095,0.0002005347,0.000024460584,0.00010277975],"domain_scores_gemma":[0.9997174,0.0000059917506,0.00017964547,0.000074188705,0.000006065628,0.000016709078],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000083737345,0.00009552186,0.0001853808,0.00004375175,0.000023102104,0.0000011249617,0.000047555535,0.00014429855,0.0000049707373],"category_scores_gemma":[0.0000010649989,0.0000896433,0.000017367445,0.000020800879,0.0001750918,0.0000018800462,0.00008297223,0.00002189559,1.5277463e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023765166,0.00007744862,0.0024936676,0.00007100344,0.000018867722,2.4940817e-7,0.00006881679,0.0000017513347,0.9941987,0.00007848351,4.0707118e-7,0.0027529614],"study_design_scores_gemma":[0.0011687817,0.00015247878,0.010440346,0.000014114882,0.00000978066,0.000022213464,0.0003419914,0.000004134152,0.98681015,0.0000097766915,0.0009450662,0.00008118211],"about_ca_topic_score_codex":0.0000027928504,"about_ca_topic_score_gemma":0.000008157277,"teacher_disagreement_score":0.007946678,"about_ca_system_score_codex":0.00001190327,"about_ca_system_score_gemma":0.000010379115,"threshold_uncertainty_score":0.36555478},"labels":[],"label_agreement":null},{"id":"W2155628241","doi":"10.1128/aem.02614-08","title":"Ecophysiology of “ <i>Halarsenatibacter silvermanii</i> ” Strain SLAS-1 <sup>T</sup> , gen. nov., sp. nov., a Facultative Chemoautotrophic Arsenate Respirer from Salt-Saturated Searles Lake, California","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Arsenic contamination and mitigation","field":"Environmental Science","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; University of Guelph; University of Alberta","funders":"University of Guelph; U.S. Geological Survey; National Aeronautics and Space Administration","keywords":"Extreme environment; Arsenate; Extremophile; Facultative; Chemistry; Biology; Ecology; Arsenic; Bacteria; Microorganism","score_opus":0.004393186272956013,"score_gpt":0.1797895045962693,"score_spread":0.1753963183233133,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155628241","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960484,0.0000569387,0.000105639076,0.0002438153,0.000034684883,0.00042098324,0.0017703471,0.00004090374,0.0012783036],"genre_scores_gemma":[0.99502295,0.00012167463,0.0006032856,0.001529222,0.00004039132,0.000016672651,0.002379449,0.000022529375,0.0002638481],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99823594,0.00009985325,0.00046240687,0.00066966476,0.00010786513,0.0004242808],"domain_scores_gemma":[0.9993278,0.00007808237,0.00023176274,0.0002374452,0.000004794683,0.00012012228],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00011581838,0.0003506736,0.0004215383,0.000054423566,0.00014042006,0.000012331844,0.00019868824,0.00028518832,0.0021973976],"category_scores_gemma":[0.000008184901,0.00031561652,0.00008285737,0.00010945995,0.00069234334,0.00010753878,0.00018036042,0.00026441668,0.0006029192],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000083014886,0.00014125595,0.0010035663,0.0000039553697,0.000040643085,0.0000071734967,0.0009179143,0.00026023667,0.9865897,0.00007696516,0.00033751832,0.010538018],"study_design_scores_gemma":[0.007000147,0.00077887153,0.492055,0.000046085268,0.00019727286,0.00011268133,0.0027545309,0.0018460748,0.4254905,0.0032223617,0.06473395,0.0017625345],"about_ca_topic_score_codex":0.00006689294,"about_ca_topic_score_gemma":0.00006135265,"teacher_disagreement_score":0.56109923,"about_ca_system_score_codex":0.00011773031,"about_ca_system_score_gemma":0.000012459003,"threshold_uncertainty_score":0.9999296},"labels":[],"label_agreement":null},{"id":"W2155759039","doi":"10.1128/aem.00558-08","title":"Fibrinogen Induces Biofilm Formation by <i>Streptococcus suis</i> and Enhances Its Antibiotic Resistance","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biofilm; Streptococcus suis; Microbiology; Fibrinogen; Penicillin; Antibiotics; Antibiotic resistance; Chemistry; Biology; Bacteria; Virulence; Biochemistry; Gene","score_opus":0.009188374822382364,"score_gpt":0.2035670258872097,"score_spread":0.19437865106482735,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155759039","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961181,0.0017892558,0.000008418895,0.00007269528,0.000027254746,0.00041268358,0.0001020348,0.000024001336,0.0014455518],"genre_scores_gemma":[0.99665767,0.002021292,0.000083022744,0.00015252139,0.000023795223,0.000025711557,0.00036238157,0.000009483521,0.0006641263],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993581,0.000011328216,0.00015547876,0.000264791,0.000026149233,0.00018415076],"domain_scores_gemma":[0.9997539,0.000021054204,0.00005756166,0.00009356631,0.0000020524792,0.00007186287],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000021096628,0.00014745438,0.0001963322,0.00003490125,0.00016596368,0.0000060051257,0.000022938204,0.00010805287,0.00005735157],"category_scores_gemma":[0.0000014306704,0.00012191571,0.000024396284,0.000038600858,0.00025549048,0.000055042063,0.00004017636,0.0000730255,0.000046743193],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028427132,0.000100048666,0.03647344,0.000022182594,0.00003997535,0.0000059543345,0.00007236196,7.38972e-8,0.961655,0.000027528382,0.0006498232,0.0009251813],"study_design_scores_gemma":[0.0011429433,0.00017049958,0.06610334,0.000017036238,0.000040996176,0.00023073777,0.000110702924,9.3377605e-7,0.9221944,0.000013793297,0.00983952,0.00013506024],"about_ca_topic_score_codex":0.0000070256638,"about_ca_topic_score_gemma":0.0000025741317,"teacher_disagreement_score":0.039460566,"about_ca_system_score_codex":0.000033954027,"about_ca_system_score_gemma":0.000005026904,"threshold_uncertainty_score":0.49715784},"labels":[],"label_agreement":null},{"id":"W2155775497","doi":"10.1128/aem.02653-13","title":"Prevalence of Diarrhea-Associated Virulence Genes and Genetic Diversity in Escherichia coli Isolates from Fecal Material of Various Animal Hosts","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"Public Health Agency","keywords":"Biology; Virulence; Microbiology; Feces; Escherichia coli; Serotype; Shiga toxin; Diarrhea; Polymerase chain reaction; Enteropathogenic Escherichia coli; Host (biology); Virology; Gene; Genetics","score_opus":0.0046704824598800595,"score_gpt":0.18603582413601996,"score_spread":0.1813653416761399,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155775497","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99783355,0.001553919,0.0000075222038,0.000014916468,0.000021569995,0.0002623843,0.00028524493,0.0000027123187,0.00001819939],"genre_scores_gemma":[0.9963884,0.0030785103,0.00037157477,0.000034596113,0.000015400783,0.000021840093,0.00006829192,0.000008378036,0.000013034442],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991913,0.00006364701,0.00018616252,0.00031500097,0.00003319786,0.00021069542],"domain_scores_gemma":[0.9997198,0.000028842036,0.00008879867,0.00011330986,0.000005893861,0.000043338852],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005335476,0.0001398039,0.00022048366,0.000020998175,0.000058222482,0.0000048112174,0.000121239704,0.00015799787,0.00004808067],"category_scores_gemma":[0.000009526777,0.00013380288,0.000022169097,0.00002687765,0.00054841413,0.000004199945,0.0008531758,0.00006484921,0.0000020373934],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008258647,0.00007692131,0.25212356,0.00002666402,0.000043686203,6.360729e-7,0.000096404656,0.00000176529,0.74729395,0.0000021141161,0.00001127601,0.00024042728],"study_design_scores_gemma":[0.00044266455,0.00024617618,0.62956476,0.000006679857,0.000014680836,0.0000017559215,0.00006873161,0.00001777993,0.369486,0.000032396907,0.000017350629,0.00010099836],"about_ca_topic_score_codex":0.0005355124,"about_ca_topic_score_gemma":0.00003776808,"teacher_disagreement_score":0.37780795,"about_ca_system_score_codex":0.000014270048,"about_ca_system_score_gemma":0.000009169788,"threshold_uncertainty_score":0.5456323},"labels":[],"label_agreement":null},{"id":"W2155819576","doi":"10.1128/aem.00019-08","title":"Phylogenetic Diversity and Molecular Detection of Bacteria in Gull Feces","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fecal contamination and water quality","field":"Environmental Science","cited_by":200,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Environment and Climate Change Canada","funders":"","keywords":"Phylogenetic tree; Biology; Feces; Phylogenetic diversity; Bacteria; Phylogenetics; Gut bacteria; Evolutionary biology; Zoology; Microbiology; Genetics; Gene","score_opus":0.006701884170469841,"score_gpt":0.16160612578141617,"score_spread":0.15490424161094632,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155819576","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99954253,0.000054590062,0.000057015302,0.000015262422,0.000013567848,0.000091728005,0.000008964137,0.0000038023286,0.00021252083],"genre_scores_gemma":[0.99966866,0.00008801533,0.00008338553,0.00012115851,0.0000021188948,0.000003075365,0.000011888776,0.0000029798894,0.000018703742],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995453,0.000033126857,0.00010262351,0.00019083274,0.000024973471,0.00010316873],"domain_scores_gemma":[0.99986583,0.000011206603,0.000033635326,0.00005952116,2.3234678e-7,0.000029549155],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000061347826,0.000073993906,0.00010409718,0.000018014036,0.00010537882,0.0000011112763,0.000044794328,0.000059892445,0.00011657663],"category_scores_gemma":[9.3336666e-7,0.000070172435,0.000011547004,0.000025886633,0.00042333966,0.000022998283,0.0004200422,0.00004357002,0.000014214379],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012996677,0.00002946192,0.17026803,0.000002569952,0.0000024031606,0.0000018075391,0.00036361243,0.0000038064695,0.8273787,0.000009626869,0.0000016321158,0.00192539],"study_design_scores_gemma":[0.00032262396,0.000044992023,0.72526336,8.0720406e-7,0.0000031326226,0.000019658393,0.000062013845,0.000008551532,0.27389595,0.000076132266,0.00023354994,0.00006922745],"about_ca_topic_score_codex":0.0001578553,"about_ca_topic_score_gemma":0.000032305972,"teacher_disagreement_score":0.55499536,"about_ca_system_score_codex":0.000030699488,"about_ca_system_score_gemma":4.766027e-7,"threshold_uncertainty_score":0.2861549},"labels":[],"label_agreement":null},{"id":"W2156084698","doi":"10.1128/aem.02075-07","title":"Use of Atomic Force Microscopy and Transmission Electron Microscopy for Correlative Studies of Bacterial Capsules","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Force Microscopy Techniques and Applications","field":"Physics and Astronomy","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; University of Guelph; U.S. Department of Energy","keywords":"Geobacter sulfurreducens; Shewanella oneidensis; Transmission electron microscopy; Microscopy; Electron microscope; Bacteria; Bacterial cell structure; Escherichia coli; Atomic force microscopy; Chemistry; Biophysics; Biofilm; Nanotechnology; Materials science; Biology; Biochemistry; Optics","score_opus":0.013389989583502019,"score_gpt":0.25806778842384887,"score_spread":0.24467779884034685,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156084698","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9938497,0.00051130814,0.004398561,0.0000147819455,0.000020171576,0.00052549125,0.0006485875,0.000008546278,0.000022849317],"genre_scores_gemma":[0.98737156,0.0006090935,0.0113497535,0.000020587833,0.000020944608,0.00006995251,0.0004190741,0.000017889923,0.00012111823],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99922425,0.00001353112,0.00028083374,0.0002691269,0.000016929154,0.00019535769],"domain_scores_gemma":[0.99960923,0.00007773475,0.00016108227,0.00011070483,0.0000066446055,0.00003462154],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000381452,0.00017818432,0.0003527146,0.000033978547,0.00014329675,0.0000037586353,0.000059757826,0.000077863246,0.000025324658],"category_scores_gemma":[5.314723e-7,0.00015953119,0.000058437072,0.000027405444,0.00074168795,0.000040747396,0.000056261106,0.00007092833,8.352576e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012229038,0.000079185855,0.0018590485,0.00002630188,0.00007198558,4.5620197e-8,0.00066660106,0.0000017461456,0.99432707,0.0015820118,0.00025304948,0.00101069],"study_design_scores_gemma":[0.0006702032,0.00019290674,0.0006238072,0.000017575525,0.000045352725,0.0000068387108,0.00024540894,0.000011202231,0.99166286,0.00093711977,0.0054386524,0.00014809266],"about_ca_topic_score_codex":0.000031361014,"about_ca_topic_score_gemma":5.1580275e-7,"teacher_disagreement_score":0.0069511924,"about_ca_system_score_codex":0.000016897406,"about_ca_system_score_gemma":0.000011930278,"threshold_uncertainty_score":0.65054935},"labels":[],"label_agreement":null},{"id":"W2156218442","doi":"10.1128/aem.00103-08","title":"Reduced Lysis upon Growth of <i>Lactococcus lactis</i> on Galactose Is a Consequence of Decreased Binding of the Autolysin AcmA","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Celiac Association","keywords":"Lactococcus lactis; Autolysin; Galactose; Autolysis (biology); Biochemistry; Peptidoglycan; Biology; Lysis; Cell wall; Bacteria; Microbiology; Lactic acid; Enzyme","score_opus":0.010115985607159358,"score_gpt":0.16968704128809717,"score_spread":0.15957105568093782,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156218442","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99894935,0.000046398054,6.111864e-7,0.00016211266,0.00002778736,0.00021023913,0.00032650214,0.0000051151364,0.00027186464],"genre_scores_gemma":[0.9995645,0.00015219382,0.00003817915,0.0001476563,0.000009476704,0.0000056861472,0.000059631453,0.0000013383019,0.000021311102],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992473,0.00004272142,0.00026085248,0.00022782278,0.000053632975,0.00016763827],"domain_scores_gemma":[0.99954325,0.00009423622,0.00023290109,0.000084754785,0.000004620613,0.000040240913],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006806066,0.00013317629,0.000268197,0.000014972575,0.000093073664,0.0000019286624,0.00018137577,0.00012157089,0.000099080025],"category_scores_gemma":[0.000005770151,0.00005388085,0.00009137259,0.00011791697,0.00051241403,0.00001586109,0.00010573382,0.000089242225,0.0000032104392],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008651418,0.00016420442,0.005840002,0.000007929415,0.000032290616,0.0000010958815,0.00008720256,6.324522e-7,0.99298745,0.00010602312,0.000028712913,0.00065794017],"study_design_scores_gemma":[0.00027271183,0.00023539404,0.06097922,0.000016389842,0.000023787326,0.000031884483,0.000115392264,0.000002451891,0.93802863,0.000073500385,0.0001272333,0.00009342378],"about_ca_topic_score_codex":0.00006487691,"about_ca_topic_score_gemma":0.000004758606,"teacher_disagreement_score":0.055139218,"about_ca_system_score_codex":0.000018790177,"about_ca_system_score_gemma":0.0000066703365,"threshold_uncertainty_score":0.21971972},"labels":[],"label_agreement":null},{"id":"W2156315970","doi":"10.1128/aem.01774-14","title":"Illuminating Microbial Dark Matter in Meromictic Sakinaw Lake","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":123,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Genome British Columbia; University of British Columbia","funders":"","keywords":"Biology; Chloroflexi (class); Metagenomics; Methanogen; Archaea; Anoxic waters; Ecology; Phylum; Euryarchaeota; Methanomicrobiales; Proteobacteria; Methanosarcina; 16S ribosomal RNA; Bacteria; Genetics","score_opus":0.0027578410281328923,"score_gpt":0.16307887972429055,"score_spread":0.16032103869615766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156315970","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98428434,0.000017027334,0.00003007475,0.00016221017,0.00010061765,0.00019346461,0.000030021336,0.000016519683,0.015165706],"genre_scores_gemma":[0.9965402,0.000022006407,0.00048549147,0.0024156685,0.000028166003,0.000018626133,0.0002841652,0.0000198222,0.00018584919],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99860454,0.00019335847,0.00027340167,0.00045103653,0.000023186707,0.000454503],"domain_scores_gemma":[0.99946797,0.00011960702,0.00008668686,0.00026423344,4.4093994e-7,0.00006106568],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002697372,0.000231457,0.00029988302,0.00004589479,0.00019612511,0.0000088630695,0.00025116338,0.00023557825,0.006358417],"category_scores_gemma":[0.0000049413584,0.00023122001,0.000038017035,0.000063227606,0.0008725029,0.000054227967,0.00056634954,0.00034373975,0.0016915252],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000032154338,0.00010581814,0.050976165,0.000006114719,0.000008094678,0.0000016028848,0.0003510582,0.000049806524,0.94420874,0.000090852,0.0023718607,0.0017977249],"study_design_scores_gemma":[0.00424374,0.00044240116,0.7908486,0.000025325371,0.00005896054,0.0004424492,0.0007071557,0.00009378034,0.03224036,0.0057504443,0.1635632,0.0015835462],"about_ca_topic_score_codex":0.000101003316,"about_ca_topic_score_gemma":0.0012078438,"teacher_disagreement_score":0.9119684,"about_ca_system_score_codex":0.00007279202,"about_ca_system_score_gemma":0.0000022854865,"threshold_uncertainty_score":0.9990858},"labels":[],"label_agreement":null},{"id":"W2156360664","doi":"10.1128/aem.01535-06","title":"Biotransformation of <i>N</i> -Nitrosodimethylamine by <i>Pseudomonas mendocina</i> KR1","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Water Treatment and Disinfection","field":"Environmental Science","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"Office of Naval Research; Strategic Environmental Research and Development Program","keywords":"Biotransformation; Chemistry; N-Nitrosodimethylamine; Methanol; Carcinogen; Biodegradation; Cometabolism; Environmental chemistry; Metabolite; Formaldehyde; Food science; Organic chemistry; Bioremediation; Biochemistry; Biology; Bacteria; Enzyme","score_opus":0.001252608545345503,"score_gpt":0.13797565325501618,"score_spread":0.13672304470967067,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156360664","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9844794,0.00013400428,0.00021575851,0.00005096472,0.0000269827,0.00019044137,0.000099958015,0.000019846922,0.014782617],"genre_scores_gemma":[0.9985258,0.00008145256,0.00023813602,0.00009037374,0.000011199806,0.000015613363,0.0007765614,0.0000093802955,0.0002515],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993079,0.000018182829,0.00020547654,0.00022876468,0.000044128446,0.00019557019],"domain_scores_gemma":[0.9997892,0.000015997737,0.00007098914,0.00009255522,3.6126335e-7,0.000030908002],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000052217165,0.00015006699,0.00015185241,0.00001973348,0.0000770629,0.0000057628436,0.000054990964,0.00008488741,0.00039938517],"category_scores_gemma":[2.3438788e-7,0.00012875722,0.000033702727,0.000047615456,0.00032631983,0.000079968646,0.000056354176,0.000048162958,0.00013371637],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019010202,0.00015881217,0.01925841,0.00000386957,0.0000074811005,4.012962e-7,0.00003758508,0.000020424128,0.977136,0.000095453346,0.0017915186,0.0014710226],"study_design_scores_gemma":[0.00096681074,0.00011484124,0.009641507,0.0000015270325,0.000027677579,0.000024826706,0.000053704618,0.000005814873,0.9713005,0.0006273841,0.017067261,0.00016816576],"about_ca_topic_score_codex":0.0003033687,"about_ca_topic_score_gemma":0.000011839851,"teacher_disagreement_score":0.015275742,"about_ca_system_score_codex":0.000055491782,"about_ca_system_score_gemma":8.672555e-7,"threshold_uncertainty_score":0.5250567},"labels":[],"label_agreement":null},{"id":"W2156369574","doi":"10.1128/aem.03958-12","title":"Camphor Pathway Redux: Functional Recombinant Expression of 2,5- and 3,6-Diketocamphane Monooxygenases of Pseudomonas putida ATCC 17453 with Their Cognate Flavin Reductase Catalyzing Baeyer-Villiger Reactions","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Centre in Green Chemistry and Catalysis; National Research Council Canada","funders":"Kansai University","keywords":"Flavin group; Pseudomonas putida; Flavin mononucleotide; Monooxygenase; Stereochemistry; Flavoprotein; Biochemistry; Reductase; Cofactor; Plasmid; Flavin adenine dinucleotide; Biology; Molecular cloning; Chemistry; Enzyme; Gene; Cytochrome P450; Peptide sequence","score_opus":0.003921527001871819,"score_gpt":0.15505934370097102,"score_spread":0.1511378166990992,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156369574","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99825686,0.0010056373,0.00016982418,0.000033739114,0.00009175467,0.00028245323,0.00012116244,0.000007773697,0.000030783078],"genre_scores_gemma":[0.9972399,0.0010173602,0.0006978931,0.000020055175,0.00006649467,0.000041877884,0.000764237,0.000019802403,0.00013236844],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991023,0.00002740487,0.0002582046,0.00039476392,0.000030510522,0.00018682714],"domain_scores_gemma":[0.99956506,0.0000076184315,0.0001445257,0.00020897767,0.000011940112,0.00006186563],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008568434,0.00019709315,0.00023256603,0.00004858275,0.000071783106,0.0000055202436,0.000056217243,0.00014734072,0.000030849493],"category_scores_gemma":[0.0000053617237,0.00014864076,0.00003591254,0.00004112239,0.00027697178,0.00000785676,0.00009128241,0.00008023219,0.0000025381096],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011082102,0.00010437865,0.00024267491,0.00003600956,0.000045431374,3.4364382e-7,0.00005424903,0.00006072266,0.9970317,0.000019010791,0.000186082,0.002108614],"study_design_scores_gemma":[0.0005331398,0.00020828936,0.0015339009,0.000024613815,0.00002109637,0.0001660309,0.0003652483,0.0000038843996,0.9937723,0.000023934012,0.0031715122,0.00017601038],"about_ca_topic_score_codex":0.00007421536,"about_ca_topic_score_gemma":0.0000044186377,"teacher_disagreement_score":0.0032593228,"about_ca_system_score_codex":0.000010989925,"about_ca_system_score_gemma":0.000013661007,"threshold_uncertainty_score":0.6061394},"labels":[],"label_agreement":null},{"id":"W2156528163","doi":"10.1128/aem.01927-13","title":"Components of the Cultivated Red Seaweed Chondrus crispus Enhance the Immune Response of Caenorhabditis elegans to Pseudomonas aeruginosa through the <i>pmk-1</i> , <i>daf-2/daf-16</i> , and <i>skn-1</i> Pathways","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Seaweed-derived Bioactive Compounds","field":"Agricultural and Biological Sciences","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Acadian Seaplants (Canada); Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; University of California, San Francisco","keywords":"Biology; Caenorhabditis elegans; Innate immune system; Pseudomonas aeruginosa; Virulence; Microbiology; Immune system; Quorum sensing; Caenorhabditis; Mutant; Immunity; Swarming motility; Bacteria; Gene; Biochemistry; Genetics","score_opus":0.008097678154556524,"score_gpt":0.1744943471314871,"score_spread":0.16639666897693056,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156528163","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937114,0.0006390183,0.000003958773,0.0037169629,0.000118862496,0.0010179386,0.00040565187,0.000019231751,0.0003669678],"genre_scores_gemma":[0.9977779,0.00023938915,0.000057289002,0.001524722,0.00004560907,0.000094041396,0.00010378655,0.00000516197,0.00015211626],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982096,0.00033621961,0.00043144956,0.00048322766,0.00012108995,0.00041838887],"domain_scores_gemma":[0.99881524,0.00056439,0.00027674483,0.00025583617,0.000018301464,0.000069492184],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023142212,0.00031530458,0.00039361636,0.000009874932,0.0004803336,0.000029818611,0.0006044499,0.00016048375,0.0001029379],"category_scores_gemma":[0.000019100133,0.00010552973,0.00010660063,0.00021877914,0.0014499489,0.00007362028,0.0006124218,0.00025312873,0.000018153194],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027402746,0.00011751536,0.0015357084,0.0000052443847,0.00004804157,4.995522e-7,0.0005500262,0.0000017914424,0.9937516,0.000053789812,0.0007362696,0.0029255226],"study_design_scores_gemma":[0.00038956472,0.00020935325,0.21602531,0.000016722877,0.00002670712,0.000046792287,0.001966055,0.0000015342207,0.7650448,0.00016855319,0.015901932,0.0002026925],"about_ca_topic_score_codex":0.0020108502,"about_ca_topic_score_gemma":0.000086912216,"teacher_disagreement_score":0.22870678,"about_ca_system_score_codex":0.00005015357,"about_ca_system_score_gemma":0.0000062196023,"threshold_uncertainty_score":0.5342397},"labels":[],"label_agreement":null},{"id":"W2156586071","doi":"10.1128/aem.00913-08","title":"Sources of Clostridia in Raw Milk on Farms","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université du Québec en Abitibi-Témiscamingue; Agriculture and Agri-Food Canada; Université Laval","funders":"Fonds Québécois de la Recherche sur la Nature et les Technologies; Université Laval","keywords":"Silage; Clostridia; Biology; Raw milk; Forage; Hay; Clostridium; Food science; Temperature gradient gel electrophoresis; Contamination; Clostridiaceae; 16S ribosomal RNA; Agronomy; Bacteria; Ecology","score_opus":0.013615085282863017,"score_gpt":0.2217933671235389,"score_spread":0.20817828184067588,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156586071","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969399,0.00051795173,0.000001035106,0.00015922291,0.000024093397,0.0002666005,0.000040936928,0.00000973644,0.0020405222],"genre_scores_gemma":[0.9979361,0.001416026,0.00003446274,0.00020555072,0.00004341594,0.000014239826,0.00012682096,0.000015066184,0.00020829178],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99908596,0.000019938214,0.00024335907,0.00029840306,0.000068228874,0.0002841119],"domain_scores_gemma":[0.9996329,0.000062324565,0.000044382483,0.00017724524,0.0000020888035,0.00008106217],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000643799,0.00015219329,0.00033004506,0.00012597487,0.00005009478,0.0000015688635,0.00006385051,0.0001446388,0.0001653751],"category_scores_gemma":[0.000005722817,0.00012899797,0.000052657644,0.00008101143,0.0004729427,0.000009129853,0.00007898775,0.00022409693,0.00006638636],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034758312,0.00035209945,0.02670273,0.000021792674,0.00002456645,0.000050723407,0.00019731917,0.0000078224075,0.969879,0.00005529859,0.00022963464,0.0021314735],"study_design_scores_gemma":[0.002454138,0.00052825996,0.03812105,0.00001914122,0.000014838959,0.00037863426,0.0003856296,0.0000063266107,0.9536769,0.000015537602,0.0042593945,0.00014020159],"about_ca_topic_score_codex":0.000040937968,"about_ca_topic_score_gemma":0.000002810312,"teacher_disagreement_score":0.016202107,"about_ca_system_score_codex":0.00006147873,"about_ca_system_score_gemma":0.000021941998,"threshold_uncertainty_score":0.52603847},"labels":[],"label_agreement":null},{"id":"W2156956373","doi":"10.1128/aem.02454-13","title":"Mapping of Heavy Metal Ion Sorption to Cell-Extracellular Polymeric Substance-Mineral Aggregates by Using Metal-Selective Fluorescent Probes and Confocal Laser Scanning Microscopy","year":2013,"lang":"en","type":"review","venue":"Applied and Environmental Microbiology","topic":"Analytical chemistry methods development","field":"Chemistry","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Eidgenössische Anstalt für Wasserversorgung Abwasserreinigung und Gewässerschutz; Universität Konstanz; Deutsche Forschungsgemeinschaft; Egg Farmers of Canada; Eidgenössische Technische Hochschule Zürich; California Institute of Technology","keywords":"Fluorescence; Extracellular polymeric substance; Metal; Chemistry; Metal ions in aqueous solution; Biofilm; Fluorescence microscope; Environmental chemistry; Nanotechnology; Materials science; Organic chemistry; Geology","score_opus":0.017707941828333143,"score_gpt":0.24979774725016693,"score_spread":0.23208980542183377,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156956373","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.22015262,0.7783563,0.0007094577,0.0000050071376,0.00003399938,0.00047228855,0.00017789677,0.00001833795,0.00007408203],"genre_scores_gemma":[0.06302905,0.9194161,0.014510471,0.000039731858,0.00010549795,0.00018966096,0.00190676,0.0001393327,0.00066338445],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997611,0.00006882378,0.00078210194,0.0009080874,0.0000891097,0.00054088526],"domain_scores_gemma":[0.9990109,0.00010006917,0.00047105004,0.00022019882,0.00000707987,0.00019070003],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001508159,0.00069223356,0.001579905,0.00008859198,0.00011653533,0.000028776925,0.00017875212,0.0005277555,0.00018366559],"category_scores_gemma":[0.0000051697725,0.00061929907,0.00016925097,0.00011683788,0.000510185,0.00004935745,0.00023278063,0.00041283594,0.000013970433],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022389942,0.00009885161,0.000028692542,0.0026678806,0.00024874418,0.0000026662076,0.0001360578,0.0000013426388,0.96042836,0.0000021812098,0.00002614469,0.036336664],"study_design_scores_gemma":[0.00035915166,0.000032422387,0.0000018119233,0.00082770246,0.00042722313,0.00010013719,0.00039119922,0.000015587584,0.95348424,0.0000069005123,0.043704472,0.0006491608],"about_ca_topic_score_codex":0.00002941027,"about_ca_topic_score_gemma":4.4113168e-7,"teacher_disagreement_score":0.15712357,"about_ca_system_score_codex":0.0002937017,"about_ca_system_score_gemma":0.00003867608,"threshold_uncertainty_score":0.99962586},"labels":[],"label_agreement":null},{"id":"W2156988296","doi":"10.1128/aem.00759-13","title":"Subtyping of a Large Collection of Historical Listeria monocytogenes Strains from Ontario, Canada, by an Improved Multilocus Variable-Number Tandem-Repeat Analysis (MLVA)","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Canadian Food Inspection Agency; Public Health Agency of Canada; Ministry of the Environment, Conservation and Parks; Health Canada; Ministry of Agriculture, Food and Rural Affairs; Public Health Ontario; University of Guelph","funders":"","keywords":"Multiple Loci VNTR Analysis; Subtyping; Variable number tandem repeat; Biology; Pulsed-field gel electrophoresis; Typing; Listeria monocytogenes; DNA profiling; Tandem repeat; Genetics; Microbiology; Genotype; Bacteria; Genome; Computer science","score_opus":0.011032543254700797,"score_gpt":0.21303205115324195,"score_spread":0.20199950789854115,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156988296","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972997,0.0002411517,0.0011017423,0.000010490286,0.00011120047,0.00024968784,0.0008499933,0.00000427085,0.0001317623],"genre_scores_gemma":[0.9944757,0.000049998245,0.001657764,0.00009819085,0.000033739263,0.000037227695,0.0033440462,0.000019308798,0.00028398194],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987453,0.000059718626,0.00039934757,0.00049450994,0.000043599444,0.0002575015],"domain_scores_gemma":[0.9993381,0.00001364151,0.00021253152,0.00033466727,0.00001093131,0.000090140646],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007538435,0.00021921493,0.00040868434,0.000030007292,0.0000746899,0.0000064254696,0.00013399629,0.00026346682,0.00038115773],"category_scores_gemma":[0.0000027147705,0.00022024791,0.00007052389,0.00006690383,0.000118245596,0.000006802133,0.00020855544,0.00007290243,8.5050215e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009630468,0.00012932596,0.045392904,0.0000064086107,0.00042192836,3.6316928e-7,0.00009675877,0.000024296432,0.95311004,0.000003401214,0.00038568876,0.00033255445],"study_design_scores_gemma":[0.0017130831,0.0003066084,0.050839115,0.0000034176871,0.0003745327,0.000024930841,0.0003115385,0.00016309484,0.9332189,0.000024477267,0.0125764,0.0004439347],"about_ca_topic_score_codex":0.57784104,"about_ca_topic_score_gemma":0.42993644,"teacher_disagreement_score":0.14790462,"about_ca_system_score_codex":0.0003247184,"about_ca_system_score_gemma":0.0000887428,"threshold_uncertainty_score":0.8981449},"labels":[],"label_agreement":null},{"id":"W2157054272","doi":"10.1128/aem.00318-07","title":"Molecular Characterization of Potential Microcystin-Producing Cyanobacteria in Lake Ontario Embayments and Nearshore Waters","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Aquatic Ecosystems and Phytoplankton Dynamics","field":"Environmental Science","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"New York Sea Grant, State University of New York; National Oceanic and Atmospheric Administration","keywords":"Microcystis; Microcystin; Biology; Cyanobacteria; Genotype; Shore; Botany; Ecology; Fishery; Gene; Genetics; Bacteria","score_opus":0.0023361879363320995,"score_gpt":0.15717832516885158,"score_spread":0.15484213723251947,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157054272","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990719,0.0000077112645,0.00032592675,0.000011410217,0.00007601443,0.00021473382,0.00007015349,0.0000049171235,0.00021721053],"genre_scores_gemma":[0.99908096,0.000017119237,0.00032778477,0.00006811207,0.000009695972,0.0000042444167,0.00043005263,0.000011070525,0.000050984676],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990923,0.0000169337,0.000285446,0.00032489156,0.000039423016,0.0002410012],"domain_scores_gemma":[0.9997236,0.000009841563,0.00010254696,0.000112170776,4.781272e-7,0.000051346404],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017522971,0.000144105,0.00019324098,0.000032125947,0.00004333868,0.000007420048,0.000066183566,0.00010301501,0.0002045148],"category_scores_gemma":[7.3145657e-7,0.0001385704,0.000017297456,0.000033587992,0.00018004396,0.000043779022,0.00015949529,0.00008862502,0.00001536134],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003647818,0.00003495052,0.19867061,0.000007762182,0.000008247266,0.000006360957,0.0005692826,0.000022334387,0.79964083,0.0000118813,0.0000014048727,0.0009898252],"study_design_scores_gemma":[0.00062104384,0.000067884175,0.87810016,0.000011990439,0.00001481848,0.000079491125,0.0001297467,0.000038562,0.11935944,0.00003407013,0.0013372301,0.00020555212],"about_ca_topic_score_codex":0.0005639061,"about_ca_topic_score_gemma":0.006482542,"teacher_disagreement_score":0.6802814,"about_ca_system_score_codex":0.000090254085,"about_ca_system_score_gemma":0.000003044249,"threshold_uncertainty_score":0.56507367},"labels":[],"label_agreement":null},{"id":"W2157099427","doi":"10.1128/aem.01086-07","title":"Impact of Feed Supplementation with Antimicrobial Agents on Growth Performance of Broiler Chickens,<i>Clostridium perfringens</i>and<i>Enterococcus</i>Counts, and Antibiotic Resistance Phenotypes and Distribution of Antimicrobial Resistance Determinants in<i>Escherichia coli</i>Isolates","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":199,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute; Ministry of Agriculture; Government of British Columbia; University of British Columbia; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Clostridium perfringens; Broiler; Antimicrobial; Antibiotic resistance; Biology; Microbiology; Antibiotics; Enterococcus; Clostridium; Distribution (mathematics); Bacteria; Food science; Mathematics","score_opus":0.006286620846605999,"score_gpt":0.2214201608364818,"score_spread":0.2151335399898758,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157099427","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99914753,0.000084411455,0.000010576079,0.000018991348,0.000019480718,0.0002608015,0.00027819228,0.0000040718437,0.0001759375],"genre_scores_gemma":[0.9984245,0.0011517969,0.00022687289,0.00006816066,0.0000071729323,7.9036187e-7,0.00007758621,0.0000137599845,0.000029382141],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989713,0.000022460146,0.00032595373,0.00033385062,0.00006402699,0.00028241874],"domain_scores_gemma":[0.9996096,0.0000355553,0.00018426584,0.000093774026,0.0000019644017,0.00007483791],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001348912,0.00021367596,0.00030426495,0.00003826,0.00006642213,0.000006109756,0.00006786733,0.000088919296,0.00003909028],"category_scores_gemma":[0.0000025418447,0.00017760333,0.000024021196,0.00007684051,0.0011516684,0.000081303115,0.00011981825,0.00010968701,0.0000031012926],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00051748485,0.00013718459,0.34021646,0.000095070056,0.000016480317,0.0000013535538,0.000095875315,0.0000040507925,0.6585987,0.000009083304,0.000053592506,0.00025464356],"study_design_scores_gemma":[0.001009347,0.00019182793,0.5647758,0.00008695471,0.000025638174,0.000009669235,0.000029049774,0.000009600185,0.4336628,0.0000045692746,0.00006252759,0.00013219993],"about_ca_topic_score_codex":0.00004264773,"about_ca_topic_score_gemma":0.00003004377,"teacher_disagreement_score":0.22493593,"about_ca_system_score_codex":0.00006210078,"about_ca_system_score_gemma":0.0000042066745,"threshold_uncertainty_score":0.72424537},"labels":[],"label_agreement":null},{"id":"W2157281235","doi":"10.1128/aem.01794-06","title":"Biotransformation of Hg(II) by Cyanobacteria","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mercury impact and mitigation studies","field":"Environmental Science","cited_by":105,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Cyanobacteria; Bioremediation; Biotransformation; Mercury (programming language); Environmental chemistry; Chemistry; Trinitrotoluene; Biochemistry; Bacteria; Biology; Organic chemistry; Enzyme","score_opus":0.002442202350864608,"score_gpt":0.16214397290047786,"score_spread":0.15970177054961324,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157281235","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98864985,0.000095067924,0.00013701865,0.000066839246,0.000024216508,0.00011504844,0.00011804009,0.000010550034,0.010783372],"genre_scores_gemma":[0.9989978,0.000107142194,0.00018436997,0.00012932048,0.0000083939285,0.0000061490846,0.0003251078,0.000005519556,0.00023616059],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994872,0.000010651068,0.00017805214,0.00014479796,0.000028686714,0.00015060522],"domain_scores_gemma":[0.9998333,0.000010391445,0.00006124507,0.00006899397,2.0638652e-7,0.00002584959],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003914452,0.00010279783,0.00012620252,0.000012867485,0.0001046884,0.0000030945791,0.00004915492,0.00006231465,0.00084831705],"category_scores_gemma":[2.986688e-7,0.00008939107,0.000020059033,0.000030507183,0.00037263182,0.000052387055,0.000081376216,0.00003664924,0.00007121787],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000007863886,0.00004835762,0.010553581,0.0000028242914,0.0000056536956,7.536957e-8,0.00012606618,0.000004652829,0.98580384,0.000115455165,0.0018060942,0.0015255038],"study_design_scores_gemma":[0.0005663379,0.00008698478,0.061113738,0.0000022684094,0.000017045517,0.000015895237,0.00026880007,0.000004549921,0.8621142,0.0003849843,0.07523144,0.00019378224],"about_ca_topic_score_codex":0.00003430816,"about_ca_topic_score_gemma":0.0000032492896,"teacher_disagreement_score":0.1236897,"about_ca_system_score_codex":0.000020139323,"about_ca_system_score_gemma":6.913869e-7,"threshold_uncertainty_score":0.92884773},"labels":[],"label_agreement":null},{"id":"W2157412224","doi":"10.1128/aem.00596-10","title":"Ammonium Concentrations in Produced Waters from a Mesothermic Oil Field Subjected to Nitrate Injection Decrease through Formation of Denitrifying Biomass and Anammox Activity","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Shell Canada; Baker Hughes; Alberta Innovates; Yara International; Suncor Energy Incorporated; ConocoPhillips","keywords":"Denitrifying bacteria; Anammox; Nitrate; Environmental chemistry; Biomass (ecology); Ammonium; Chemistry; Denitrification; Nitrite; Ammonia; Ammonium nitrate; Nitrogen; Ecology; Biochemistry; Biology; Organic chemistry","score_opus":0.005563772058786418,"score_gpt":0.18867555965481944,"score_spread":0.18311178759603303,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157412224","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993961,0.000021274649,0.000066248,0.00011512741,0.00003676396,0.00020415393,0.00008062217,0.000011127511,0.00006856923],"genre_scores_gemma":[0.99843127,0.000031571213,0.001185504,0.00008962537,0.000008943794,0.000027545557,0.00019374197,0.000008382466,0.00002340286],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992978,0.0000324779,0.00015584016,0.00028931224,0.00003395411,0.0001906356],"domain_scores_gemma":[0.99973756,0.000032027805,0.000060354323,0.00010447977,6.6662636e-7,0.00006491114],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004894558,0.00013943683,0.00014821651,0.000028397208,0.000073886426,0.000011076881,0.0000552778,0.00011015897,0.00008170825],"category_scores_gemma":[0.0000029390594,0.00012278675,0.000017191951,0.00006662943,0.00014928934,0.0001349476,0.000075454554,0.00009976509,0.000012094946],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015548478,0.000088232526,0.03564451,0.000004172087,0.000011658135,0.0000011227162,0.0007713415,0.0000026347107,0.9602278,0.0000019273702,0.000028420753,0.0030627372],"study_design_scores_gemma":[0.00069897267,0.00008154679,0.014421222,0.000003316137,0.000019436795,0.000018513494,0.00016446372,0.000018434599,0.98420864,0.00005972324,0.00017807845,0.00012766606],"about_ca_topic_score_codex":0.0026436038,"about_ca_topic_score_gemma":0.0010068794,"teacher_disagreement_score":0.023980867,"about_ca_system_score_codex":0.000047629757,"about_ca_system_score_gemma":0.0000031595052,"threshold_uncertainty_score":0.5007098},"labels":[],"label_agreement":null},{"id":"W2157683553","doi":"10.1128/aem.69.9.5178-5185.2003","title":"Real-Time PCR for Quantification of <i>Giardia</i> and <i>Cryptosporidium</i> in Environmental Water Samples and Sewage","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":383,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; University of Alberta","keywords":"Cryptosporidium; Giardia; Sewage; Biology; Environmental science; Environmental chemistry; Microbiology; Feces; Environmental engineering; Chemistry","score_opus":0.006383649498178403,"score_gpt":0.18638027440509936,"score_spread":0.17999662490692095,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157683553","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997904,0.0007643205,0.00013345534,0.00002258743,0.00007367501,0.00036149906,0.00038388255,0.000009002355,0.00034760224],"genre_scores_gemma":[0.9969821,0.0015381781,0.00040160044,0.00006311388,0.0000067201795,0.00004509739,0.0008551647,0.000013534171,0.00009451009],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99907523,0.000058683716,0.00025466786,0.00033311418,0.000008256417,0.00027002796],"domain_scores_gemma":[0.99960726,0.00018886053,0.00005914974,0.00012097274,0.0000012093525,0.000022521634],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018219206,0.00016811046,0.00028409803,0.0000587378,0.0001126467,0.0000048274137,0.00003495451,0.00022402512,0.00010759512],"category_scores_gemma":[0.0000063737043,0.0001430914,0.000026794347,0.000015720057,0.00058153615,0.00002996155,0.00004890368,0.00008758098,0.000034800356],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004926184,0.00012586043,0.017065208,0.0000150625765,0.000035826786,5.1581856e-7,0.0002173234,0.0000031144439,0.98030776,0.0015551797,0.000083989915,0.00054092763],"study_design_scores_gemma":[0.0021332698,0.00017214741,0.02498673,0.0000071800378,0.000060295195,0.00016201314,0.0005214297,0.000001731502,0.9565126,0.0005702213,0.014623333,0.00024907786],"about_ca_topic_score_codex":0.000026854495,"about_ca_topic_score_gemma":0.0000032363057,"teacher_disagreement_score":0.023795158,"about_ca_system_score_codex":0.000022630002,"about_ca_system_score_gemma":0.0000046736354,"threshold_uncertainty_score":0.5835098},"labels":[],"label_agreement":null},{"id":"W2158046634","doi":"10.1128/aem.00524-15","title":"Giardia spp. Are Commonly Found in Mixed Assemblages in Surface Water, as Revealed by Molecular and Whole-Genome Characterization","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Health Services Authority; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Giardia; Giardia lamblia; Outbreak; Surface water; Waterborne diseases; Biology; Cryptosporidium; Veterinary medicine; Ecology; Microbiology; Feces; Virology; Environmental science","score_opus":0.005881909551167668,"score_gpt":0.192709937044603,"score_spread":0.18682802749343536,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158046634","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974041,0.0015439378,0.00005572969,0.00014758427,0.0001439785,0.0002720734,0.00022200376,0.00001445472,0.00019612948],"genre_scores_gemma":[0.9956643,0.00022048592,0.000021522297,0.00033871495,0.0000068380386,0.000021316728,0.0034803986,0.000015304593,0.00023113149],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99893516,0.000134388,0.00024960394,0.000334318,0.000012012792,0.0003345337],"domain_scores_gemma":[0.9997072,0.000056610537,0.00006232996,0.00013194054,0.0000036797558,0.00003819418],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017829594,0.00019497,0.00031747587,0.000066993125,0.00006368861,0.000012774546,0.00006735081,0.00030902022,0.000041068237],"category_scores_gemma":[0.0000095959695,0.00017642176,0.00001690694,0.000048783022,0.00027219875,0.000045742247,0.000120153956,0.00019941705,0.00026934966],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004973515,0.00014862695,0.05555894,0.000007676629,0.000024305882,0.000014327869,0.00019993457,0.000022532271,0.94369197,0.00004708843,0.00012071337,0.00011412856],"study_design_scores_gemma":[0.0075615235,0.00034447334,0.60568994,0.000039894225,0.000060477607,0.00057179783,0.0013364643,0.0000059063027,0.32321367,0.00037392924,0.059985034,0.0008168818],"about_ca_topic_score_codex":0.00009056193,"about_ca_topic_score_gemma":0.00003126438,"teacher_disagreement_score":0.62047833,"about_ca_system_score_codex":0.00007163693,"about_ca_system_score_gemma":0.000009254264,"threshold_uncertainty_score":0.71942705},"labels":[],"label_agreement":null},{"id":"W2158175472","doi":"10.1128/aem.05206-11","title":"Heavy-Machinery Traffic Impacts Methane Emissions as Well as Methanogen Abundance and Community Structure in Oxic Forest Soils","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Anaerobic Digestion and Biogas Production","field":"Engineering","cited_by":121,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Queen's University; Queen's University Belfast","keywords":"Methanogen; Soil water; Methane; Methanogenesis; Environmental science; Peat; Biology; Abundance (ecology); Greenhouse gas; Methane monooxygenase; Archaea; Environmental chemistry; Ecology; Soil science; Chemistry; Bacteria","score_opus":0.007620251187268495,"score_gpt":0.1874708811918114,"score_spread":0.1798506300045429,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158175472","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974759,0.0008048449,0.000014734544,0.00002853487,0.00008177525,0.00016777923,0.000036995305,0.000051614876,0.0013378098],"genre_scores_gemma":[0.9985675,0.0006982273,0.00028687567,0.00013896327,0.000021604556,0.000007146109,0.00018435394,0.000019431842,0.00007589368],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993163,0.00006466336,0.00016545388,0.00019641129,0.000021882057,0.00023532746],"domain_scores_gemma":[0.9996875,0.000028122418,0.00003060499,0.00015475001,9.4980174e-7,0.000098087905],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001247543,0.00019236465,0.00020179167,0.000067337096,0.00009921105,0.0000067656742,0.00008374327,0.00017630006,0.00027597504],"category_scores_gemma":[0.0000042168563,0.00016935707,0.000021781478,0.000050198883,0.00021337761,0.00005116232,0.00006711979,0.00038387487,0.000051123476],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005028538,0.00007478796,0.0012795961,0.000016167915,0.000028327784,0.000002780578,0.0009440137,0.00036413,0.99449056,0.0002562,0.000089418274,0.0024037173],"study_design_scores_gemma":[0.0033027944,0.00075921405,0.13697957,0.00007202987,0.000119691984,0.0012271687,0.005057277,0.00021112699,0.8200153,0.0038011963,0.027025266,0.0014293427],"about_ca_topic_score_codex":0.00015877635,"about_ca_topic_score_gemma":0.00016316862,"teacher_disagreement_score":0.17447525,"about_ca_system_score_codex":0.000043634358,"about_ca_system_score_gemma":0.000005314643,"threshold_uncertainty_score":0.6906181},"labels":[],"label_agreement":null},{"id":"W2158237663","doi":"10.1128/aem.67.2.872-879.2001","title":"Binding Analyses of <i>Bacillus thuringiensis</i> Cry δ-Endotoxins Using Brush Border Membrane Vesicles of <i>Ostrinia nubilalis</i>","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect Resistance and Genetics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"","keywords":"Bacillus thuringiensis; Ostrinia; Brush border; Cry1Ac; Biology; European corn borer; Binding site; Biochemistry; Vesicle; Molecular biology; Membrane; Pyralidae; Transgene; Genetically modified crops; Bacteria; Lepidoptera genitalia; Gene; Botany","score_opus":0.011959390532126711,"score_gpt":0.2461241518242216,"score_spread":0.23416476129209488,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158237663","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977405,0.0013047453,0.00010607522,0.000008725287,0.000042413936,0.00013199297,0.0001575525,0.0000042541433,0.0005037448],"genre_scores_gemma":[0.996642,0.0020792892,0.0007767343,0.00011536544,0.000061804705,0.0000039994334,0.00024794936,0.000017110315,0.00005576532],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990383,0.000028751649,0.00030642847,0.0003226645,0.00004538003,0.00025848168],"domain_scores_gemma":[0.99953884,0.000014012323,0.00015826925,0.00023680257,0.0000068762743,0.000045182205],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007226115,0.00018771178,0.00028375685,0.00005478868,0.000067187604,0.000004373431,0.00011894192,0.00017634917,0.00003593629],"category_scores_gemma":[0.0000033478975,0.00017870303,0.000080311314,0.00006850448,0.00038608324,0.0000031153807,0.00014234068,0.00006497953,0.0000022336565],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010473518,0.00006945986,0.0046824045,0.0000261991,0.00009713469,0.0000020060668,0.0000413763,0.00014708085,0.9941657,0.000019261663,0.000022136648,0.0006224776],"study_design_scores_gemma":[0.00064070954,0.00012755682,0.0013179745,0.000009486352,0.00005930463,0.000060965143,0.00021027793,0.0000049335877,0.98889744,0.000012963934,0.008477402,0.0001809795],"about_ca_topic_score_codex":0.000024329764,"about_ca_topic_score_gemma":0.00001014889,"teacher_disagreement_score":0.008455265,"about_ca_system_score_codex":0.000011693772,"about_ca_system_score_gemma":0.000017427765,"threshold_uncertainty_score":0.72872984},"labels":[],"label_agreement":null},{"id":"W2158263045","doi":"10.1128/aem.00557-09","title":"Adsorption of<i>Mycobacterium avium</i>subsp.<i>paratuberculosis</i>to Soil Particles","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Meat and Livestock Australia; McGill University","keywords":"Paratuberculosis; Adsorption; Mycobacterium; Silica gel; Chemistry; Soil test; Column chromatography; Environmental chemistry; Mycobacterium avium subsp. paratuberculosis; Soil water; Microbiology; Chromatography; Veterinary medicine; Biology; Bacteria; Ecology; Organic chemistry; Medicine","score_opus":0.007081095736939524,"score_gpt":0.22064984506654176,"score_spread":0.21356874932960224,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158263045","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99745905,0.0003677433,0.000018685543,0.0010320555,0.000038093476,0.00032327455,0.00007898068,0.00002325919,0.0006588646],"genre_scores_gemma":[0.99652714,0.0005500731,0.00040422098,0.0021041534,0.000072875024,0.000028927485,0.0002442877,0.00001113063,0.000057210025],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902236,0.000025417134,0.00023301331,0.0003143606,0.000059840342,0.0003450106],"domain_scores_gemma":[0.9994786,0.0000325288,0.000046764395,0.00020540148,0.0000046536984,0.00023204745],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000089827205,0.00016206685,0.00030700525,0.00007249831,0.00004084969,0.000008560001,0.000060389757,0.00012023223,0.00021884052],"category_scores_gemma":[0.00000608649,0.00013997892,0.000058375655,0.00007180945,0.00017561488,0.00003307988,0.000060424583,0.00011453242,0.00014180611],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025746494,0.0002570999,0.024134161,0.000021409292,0.00002685555,0.0000037056489,0.00010683003,0.0000015180706,0.9687439,0.000098418364,0.0015162032,0.0048324275],"study_design_scores_gemma":[0.001153931,0.00084809866,0.32623225,0.000021289725,0.00006997782,0.00010761719,0.000108999055,0.0000045091388,0.6614222,0.0001375915,0.0097157555,0.00017780118],"about_ca_topic_score_codex":0.000009987508,"about_ca_topic_score_gemma":0.0000022639763,"teacher_disagreement_score":0.30732173,"about_ca_system_score_codex":0.00003809883,"about_ca_system_score_gemma":0.000012099309,"threshold_uncertainty_score":0.5708175},"labels":[],"label_agreement":null},{"id":"W2158265621","doi":"10.1128/aem.72.1.428-436.2006","title":"Growth of <i>Dehalobacter</i> and <i>Dehalococcoides</i> spp. during Degradation of Chlorinated Ethanes","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":157,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Dehalococcoides; Reductive dechlorination; Vinyl chloride; Enrichment culture; Bacteria; Microbiology; Chemistry; 16S ribosomal RNA; Biology; Biodegradation; Organic chemistry","score_opus":0.0026293326779586045,"score_gpt":0.14937209467513474,"score_spread":0.14674276199717612,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158265621","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99882346,0.000080532685,0.000006980116,0.000032323518,0.000031776188,0.00017577937,0.00011114287,0.00001095946,0.0007270678],"genre_scores_gemma":[0.99922717,0.00020487071,0.00021524334,0.000048053294,0.000011565181,0.000003107588,0.00017021898,0.000009092116,0.00011070872],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991837,0.000020866313,0.0002923778,0.0002747439,0.000048311653,0.00017999043],"domain_scores_gemma":[0.99967927,0.000022573151,0.00016344196,0.00009441651,0.0000015922582,0.000038737966],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000080722464,0.00014860439,0.00020850131,0.000029363822,0.000049002527,0.000004219948,0.00007692057,0.000113364134,0.00027855037],"category_scores_gemma":[0.0000020231594,0.00013327839,0.000025948018,0.00006818932,0.0005396696,0.000053251755,0.00014211508,0.00006290062,0.000025162431],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035289297,0.00007241452,0.113402836,0.00001944302,0.0000062328045,6.4031997e-7,0.000036602014,0.0000030172178,0.8860232,0.00005737018,0.000065610795,0.00027729257],"study_design_scores_gemma":[0.0005560472,0.000034491008,0.24688005,0.0000042148995,0.000012395708,0.000022812681,0.000047685786,0.0000020795353,0.751923,0.00005613785,0.00034582787,0.00011525676],"about_ca_topic_score_codex":0.00021157667,"about_ca_topic_score_gemma":0.000029116114,"teacher_disagreement_score":0.13410024,"about_ca_system_score_codex":0.000030883406,"about_ca_system_score_gemma":0.0000018174625,"threshold_uncertainty_score":0.5434935},"labels":[],"label_agreement":null},{"id":"W2158519273","doi":"10.1128/aem.70.7.4393-4397.2004","title":"Isolates of <i>Piscirickettsia salmonis</i> from Scotland and Ireland Show Evidence of Clonal Diversity","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Biology; Ribosomal DNA; Internal transcribed spacer; Zoology; Aquaculture; 16S ribosomal RNA; Norwegian; Phylogenetics; Ribosomal RNA; Genetics; Fishery; Fish <Actinopterygii>; Gene","score_opus":0.007105911220122977,"score_gpt":0.17843821842964233,"score_spread":0.17133230720951936,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158519273","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9882176,0.010822294,0.000057551406,0.000097160635,0.000076382654,0.00021136036,0.00034996902,0.000011351967,0.00015632073],"genre_scores_gemma":[0.9979731,0.0011960575,0.00012873036,0.0001409396,0.000010923756,0.0000034255024,0.00044744028,0.000008688396,0.00009073211],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999113,0.000035033194,0.00024155348,0.0003724095,0.000014813075,0.0002231897],"domain_scores_gemma":[0.9995926,0.00007142441,0.00014836699,0.00015491564,0.000004022842,0.000028679715],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000076413206,0.00020305817,0.0003545414,0.00004921009,0.00015776763,0.000004487712,0.00015426592,0.00021491767,0.00016015564],"category_scores_gemma":[0.000003351583,0.00017338248,0.000055868077,0.0000379677,0.001031754,0.000056467557,0.0006368239,0.0001308946,0.000032666845],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002565051,0.00012225502,0.03770756,0.000035396046,0.00019351736,0.0000017430798,0.0005870711,0.0000027973865,0.9599664,0.00030106236,0.0002688632,0.00055677985],"study_design_scores_gemma":[0.0058661667,0.00047315238,0.14359523,0.00016662639,0.0005085322,0.00008607873,0.001656121,4.8554097e-7,0.8416773,0.0015020431,0.003879094,0.0005891392],"about_ca_topic_score_codex":0.00020799325,"about_ca_topic_score_gemma":0.000019473373,"teacher_disagreement_score":0.11828913,"about_ca_system_score_codex":0.000020581972,"about_ca_system_score_gemma":0.000008730802,"threshold_uncertainty_score":0.7070332},"labels":[],"label_agreement":null},{"id":"W2158524196","doi":"10.1128/aem.00582-07","title":"Morphological and Genetic Diversity of Temperate Phages in <i>Clostridium difficile</i>","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":100,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Université de Sherbrooke","funders":"","keywords":"Siphoviridae; Prophage; Myoviridae; Biology; Microbiology; Bacteriophage; Genetics; Podoviridae; Temperateness; Virology; Gene; Escherichia coli","score_opus":0.010779680126299512,"score_gpt":0.22289313639191263,"score_spread":0.21211345626561312,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158524196","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998213,0.00084597897,0.000011651108,0.00011577277,0.000022520107,0.00028610267,0.00005321797,0.000010272356,0.0004414912],"genre_scores_gemma":[0.9982672,0.0012479796,0.0001619621,0.00015644563,0.0000325334,0.0000038247717,0.00006305217,0.0000099057015,0.000057123616],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989613,0.00001988703,0.000259205,0.000348981,0.00006707575,0.00034354706],"domain_scores_gemma":[0.9996249,0.00007369411,0.000045308137,0.00013359114,0.0000034326633,0.00011907808],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014769127,0.00016050393,0.0003315981,0.00010022124,0.000079277874,0.0000034948769,0.00006355925,0.000177802,0.00011695255],"category_scores_gemma":[0.0000065643876,0.00013730933,0.00003468121,0.00007826915,0.0005577165,0.000011883087,0.00042559038,0.00021970095,0.0000106509815],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029465597,0.0002502607,0.087157845,0.000029258998,0.000020326772,0.00012333257,0.000098797325,0.000001206219,0.90902275,0.000017395978,0.000045443732,0.002938725],"study_design_scores_gemma":[0.002172331,0.00035324466,0.24097197,0.000011617525,0.000032980675,0.0005423611,0.00049821363,0.000004834997,0.7548811,0.000017761198,0.0003710283,0.00014258036],"about_ca_topic_score_codex":0.00005248783,"about_ca_topic_score_gemma":0.000008348149,"teacher_disagreement_score":0.15414168,"about_ca_system_score_codex":0.00006015672,"about_ca_system_score_gemma":0.000009738141,"threshold_uncertainty_score":0.5599312},"labels":[],"label_agreement":null},{"id":"W2158780821","doi":"10.1128/aem.00237-12","title":"Seasonal Diversity of Planktonic Protists in Southwestern Alberta Rivers over a 1-Year Period as Revealed by Terminal Restriction Fragment Length Polymorphism and 18S rRNA Gene Library Analyses","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Lethbridge","funders":"University of Lethbridge","keywords":"Biology; Library; 18S ribosomal RNA; Restriction fragment length polymorphism; Ecology; Terminal restriction fragment length polymorphism; Plankton; Ribosomal RNA; Community structure; Zoology; 16S ribosomal RNA; Genetics; Gene; Genotype","score_opus":0.00725674089244004,"score_gpt":0.1982457775939649,"score_spread":0.19098903670152484,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158780821","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99876666,0.00018963825,0.0000020915718,0.000049425205,0.000036925205,0.00025723665,0.0001808233,0.0000067893657,0.00051039265],"genre_scores_gemma":[0.9986874,0.0002988843,0.00012112403,0.00024002958,0.000016086375,0.000010881657,0.00045138443,0.000009960807,0.00016425845],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99901134,0.0001369123,0.00019053371,0.00029291157,0.000040539304,0.0003277382],"domain_scores_gemma":[0.99957377,0.000060579492,0.00011384281,0.00015328369,3.257413e-7,0.00009817496],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00008573156,0.00018760446,0.00026229338,0.00004404338,0.00020639386,0.0000051094567,0.00015505469,0.00019915604,0.0022998438],"category_scores_gemma":[0.0000019310194,0.00018268572,0.000034977904,0.00005525807,0.00068375573,0.00014408217,0.0009710109,0.00021287789,0.000064658816],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013873167,0.00015291691,0.48674607,0.000005881447,0.000023551318,0.000001991506,0.0006423568,0.0000035575029,0.51170856,0.00001711652,0.00032239867,0.0002368675],"study_design_scores_gemma":[0.0011010944,0.00022270744,0.9850923,0.0000073460533,0.000047390346,0.00010377618,0.00032139468,0.000005585104,0.01109663,0.0001242237,0.0016147743,0.00026276681],"about_ca_topic_score_codex":0.0009771017,"about_ca_topic_score_gemma":0.00011744099,"teacher_disagreement_score":0.5006119,"about_ca_system_score_codex":0.00007166445,"about_ca_system_score_gemma":0.000005574427,"threshold_uncertainty_score":0.99861217},"labels":[],"label_agreement":null},{"id":"W2159092790","doi":"10.1128/aem.00094-08","title":"Cysteine Scanning Mutagenesis of α4, a Putative Pore-Lining Helix of the <i>Bacillus thuringiensis</i> Insecticidal Toxin Cry1Aa","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect Resistance and Genetics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Biotechnology Research Institute; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Manduca sexta; Midgut; Bacillus thuringiensis; Brush border; Mutant; Cysteine; Biology; Biochemistry; Toxin; Mutagenesis; Bombyx mori; Amino acid; Wild type; Vesicle; Microbiology; Biophysics; Insect; Bacteria; Larva; Enzyme; Membrane; Genetics; Gene; Botany","score_opus":0.004808457965092229,"score_gpt":0.17145903183653974,"score_spread":0.16665057387144752,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159092790","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979329,0.0011719797,0.00011306373,0.000018657758,0.000058486447,0.00016160193,0.00010410561,0.000003277479,0.00043592497],"genre_scores_gemma":[0.9985899,0.00038594098,0.0004908912,0.00020657596,0.000047246776,0.000010427966,0.00011617969,0.000016790571,0.00013604868],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99914193,0.000041309126,0.00026957982,0.00028361537,0.000048759648,0.0002148124],"domain_scores_gemma":[0.9995504,0.000016256174,0.00016912332,0.00022308486,0.000008244898,0.000032877484],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007622354,0.00016507457,0.00023020229,0.0000276311,0.00011788523,0.000001850247,0.00013693499,0.00015191789,0.000008210629],"category_scores_gemma":[0.000007076433,0.00013143785,0.00008054036,0.000053156396,0.0006438348,0.0000018569616,0.0002141016,0.00007737351,0.0000014768742],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009799133,0.000053109146,0.005354994,0.000019432051,0.000063191204,0.0000028136078,0.00043597227,0.00018268097,0.99322695,0.000017085893,0.00004394886,0.0005018324],"study_design_scores_gemma":[0.00060780655,0.00025415033,0.011994776,0.000008923575,0.000026101716,0.00015688108,0.00045772287,0.000003727982,0.98497504,0.000018360517,0.0013532989,0.00014318562],"about_ca_topic_score_codex":0.000017329747,"about_ca_topic_score_gemma":0.000010168341,"teacher_disagreement_score":0.008251884,"about_ca_system_score_codex":0.000012855041,"about_ca_system_score_gemma":0.000025851588,"threshold_uncertainty_score":0.53598803},"labels":[],"label_agreement":null},{"id":"W2159204023","doi":"10.1128/aem.02007-09","title":"Characterization of the NifA-RpoN Regulon in <i>Rhizobium etli</i> in Free Life and in Symbiosis with <i>Phaseolus vulgaris</i>","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Wilfrid Laurier University; University of Toronto","funders":"Dirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de México; Consejo Nacional de Ciencia y Tecnología","keywords":"rpoN; Regulon; Biology; Nitrogen fixation; Sigma factor; Genetics; Gene; Promoter; Regulation of gene expression; Bacteria; Gene expression","score_opus":0.0024110275723930015,"score_gpt":0.1370642588388752,"score_spread":0.1346532312664822,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159204023","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99861103,0.000058294856,6.4235266e-8,0.00084779336,0.00004757933,0.000261887,0.000089531364,0.000005677984,0.00007813032],"genre_scores_gemma":[0.9992839,0.00004830271,0.000019977326,0.0005053455,0.000021242384,0.00002174559,0.00008198039,0.0000018629656,0.000015639715],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99923015,0.00004640543,0.00020408796,0.00027915125,0.00003464522,0.00020555158],"domain_scores_gemma":[0.9997443,0.000057536916,0.00008254975,0.00007952844,0.0000013117113,0.000034764977],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001318092,0.00012846752,0.0001866684,0.000020783216,0.00003643466,0.000007972341,0.00014796712,0.00017565068,0.000036126687],"category_scores_gemma":[0.0000064798805,0.0000548416,0.000016763435,0.00014013897,0.0002715852,0.000046913887,0.00014809643,0.00021443337,0.0000018172032],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004528937,0.000082359955,0.2252449,0.0000040050986,0.000002418904,7.395237e-7,0.000082642735,5.261459e-8,0.77386975,0.000023393834,0.000006844663,0.0006375944],"study_design_scores_gemma":[0.0004966286,0.000057935267,0.636521,0.000015171482,0.000003973583,0.000016953629,0.000114927745,0.0000011444967,0.36236998,0.000056844172,0.00023358491,0.00011185776],"about_ca_topic_score_codex":0.00028913535,"about_ca_topic_score_gemma":0.0028673713,"teacher_disagreement_score":0.41149977,"about_ca_system_score_codex":0.000017765216,"about_ca_system_score_gemma":0.0000037096443,"threshold_uncertainty_score":0.22363755},"labels":[],"label_agreement":null},{"id":"W2159308869","doi":"10.1128/aem.67.9.4041-4047.2001","title":"Identification of a New Plasmid-Encoded <i>sec</i> -Dependent Bacteriocin Produced by <i>Listeria innocua</i> 743","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"","keywords":"Bacteriocin; Operon; Listeria; Biology; Plasmid; Mutant; Listeria monocytogenes; Structural gene; Peptide sequence; Transposable element; Gene; Genetics; Microbiology; Bacteria","score_opus":0.005583002211279933,"score_gpt":0.1641104477716165,"score_spread":0.15852744556033657,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159308869","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998614,0.00018649435,0.000010793302,0.00036253326,0.00007660729,0.00026255372,0.0002963034,0.000019485697,0.00017122937],"genre_scores_gemma":[0.9981141,0.00040434438,0.000027582335,0.00035966287,0.0000527406,0.000011618058,0.0006473967,0.0000020521475,0.00038050802],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99897486,0.00002433163,0.00032520812,0.00038935035,0.000045760993,0.00024051158],"domain_scores_gemma":[0.99966705,0.000019965313,0.00015511429,0.00007804522,0.0000029115104,0.00007691459],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010252248,0.00016480262,0.00020494165,0.000009906853,0.0000915293,0.000021554388,0.00016589688,0.00014095518,0.00020246861],"category_scores_gemma":[0.0000018111491,0.00008252065,0.000035694316,0.000072601026,0.00013896052,0.000044415607,0.00012808356,0.00008719043,0.000033292534],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000060505434,0.00012365544,0.0015021613,0.0000044717576,0.00001638069,6.3320533e-7,0.000054917924,5.747413e-7,0.9889401,0.00003910083,0.00051957014,0.008737907],"study_design_scores_gemma":[0.00047928304,0.00021584053,0.0069640656,0.000006125988,0.000019540972,0.000039428494,0.0002136279,0.000005130617,0.9681568,0.000107370644,0.023560109,0.00023264746],"about_ca_topic_score_codex":0.0000440789,"about_ca_topic_score_gemma":0.000015512254,"teacher_disagreement_score":0.023040539,"about_ca_system_score_codex":0.000025315065,"about_ca_system_score_gemma":0.0000035567882,"threshold_uncertainty_score":0.33650947},"labels":[],"label_agreement":null},{"id":"W2159441530","doi":"10.1128/aem.05625-11","title":"Complete Genome Sequence of the Fish Pathogen Flavobacterium branchiophilum","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Institut National de la Recherche Agronomique; Agence Nationale de la Recherche","keywords":"Biology; Genome; Flavobacterium; Whole genome sequencing; Francisella; Virulence; Genetics; Pathogen; Gene; Comparative genomics; Microbiology; Genomics; Bacteria; Pseudomonas","score_opus":0.013033631742676726,"score_gpt":0.161656885078089,"score_spread":0.1486232533354123,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159441530","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9934051,0.0005003613,0.000013047348,0.00006877092,0.0003149061,0.0004009557,0.0025691492,0.000025131172,0.0027025524],"genre_scores_gemma":[0.9966537,0.00010767264,0.00004812718,0.000795823,0.000015476504,0.0000168715,0.0015283024,0.000015899208,0.0008181552],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989885,0.00006874397,0.0002584521,0.00035394236,0.000011711523,0.00031864797],"domain_scores_gemma":[0.9994982,0.000014226102,0.00014571301,0.00031635156,0.000003304139,0.000022218896],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007096369,0.00022112485,0.0002677523,0.000032682517,0.00016160886,0.0000037713255,0.00033255815,0.00018401477,0.000832209],"category_scores_gemma":[0.0000016586589,0.00015805777,0.00009531413,0.000049760958,0.0009772783,0.000029519331,0.0004018481,0.00016198884,0.00017813333],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005621329,0.000095670155,0.0016341056,0.000016337213,0.0001161023,0.0000013453138,0.0005398941,1.998647e-7,0.99620867,0.0005922477,0.0003611911,0.00037804976],"study_design_scores_gemma":[0.0028093425,0.00021657438,0.22619432,0.000025994244,0.00030910826,0.00027542163,0.0012594226,3.509422e-7,0.36430266,0.0004897083,0.4033107,0.0008064245],"about_ca_topic_score_codex":0.000020895008,"about_ca_topic_score_gemma":0.0000074797676,"teacher_disagreement_score":0.631906,"about_ca_system_score_codex":0.0000209661,"about_ca_system_score_gemma":0.000007345981,"threshold_uncertainty_score":0.91121054},"labels":[],"label_agreement":null},{"id":"W2159993252","doi":"10.1128/aem.03730-14","title":"Complex Population Structure of Borrelia burgdorferi in Southeastern and South Central Canada as Revealed by Phylogeographic Analysis","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; Université de Montréal","funders":"","keywords":"Multilocus sequence typing; Phylogeography; Lyme disease; Borrelia burgdorferi; Geography; Ixodes scapularis; Population genetics; Biology; Tick; Ecology; Population; Zoology; Ixodidae; Phylogenetics; Demography; Genetics; Genotype; Virology","score_opus":0.0020051322630503135,"score_gpt":0.15638714534532258,"score_spread":0.15438201308227226,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159993252","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980022,0.00066826417,0.00002089317,0.000020461215,0.00006229482,0.00017056297,0.001015118,0.000010222631,0.000030038012],"genre_scores_gemma":[0.99676126,0.00003116413,0.000011105084,0.00019586808,0.000008521613,0.0000047529097,0.0029572758,0.000011345689,0.000018683346],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989169,0.00011051566,0.0002763813,0.00036737058,0.000016469583,0.00031236274],"domain_scores_gemma":[0.9996199,0.000044595134,0.00013868196,0.00015596725,0.000002349128,0.000038519287],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000041854113,0.00020144891,0.00042156305,0.00011464639,0.0000760106,0.000004447873,0.000078516205,0.0001901261,0.00028027192],"category_scores_gemma":[0.000004682282,0.00018917256,0.000045273122,0.00010682037,0.0002983397,0.000015170084,0.00007299316,0.00013738713,0.0000033819501],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038989805,0.00002470862,0.5051607,0.000006833463,0.0001504813,2.685939e-7,0.000082374565,0.000019299683,0.49419436,0.000033069962,0.00003302855,0.0002558908],"study_design_scores_gemma":[0.0010841432,0.00007273454,0.99192107,0.0000036638223,0.0002021197,0.000024079309,0.00030975795,0.000009177825,0.005463705,0.00008489442,0.0006262656,0.00019836993],"about_ca_topic_score_codex":0.07367987,"about_ca_topic_score_gemma":0.06022357,"teacher_disagreement_score":0.48873067,"about_ca_system_score_codex":0.000033039338,"about_ca_system_score_gemma":0.000011740433,"threshold_uncertainty_score":0.9569249},"labels":[],"label_agreement":null},{"id":"W2160003948","doi":"10.1128/aem.66.12.5387-5392.2000","title":"Uptake and Active Efflux of Polycyclic Aromatic Hydrocarbons by <i>Pseudomonas fluorescens</i> LP6a","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Phenanthrene; Efflux; Chemistry; Pseudomonas fluorescens; Fluoranthene; Naphthalene; Biochemistry; Chromatography; Bacteria; Environmental chemistry; Organic chemistry; Biology","score_opus":0.0026270077597695548,"score_gpt":0.1606900668144376,"score_spread":0.15806305905466803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160003948","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99575895,0.00011884841,0.0000024584933,0.000094890274,0.000026863689,0.00023457785,0.00013527868,0.000016391994,0.003611714],"genre_scores_gemma":[0.99806696,0.00059582794,0.0001979529,0.0005548667,0.0000117963955,0.000006058155,0.00018103686,0.000014409273,0.00037110408],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99897015,0.000031181753,0.0002615226,0.0003948415,0.00005769325,0.00028460225],"domain_scores_gemma":[0.99962187,0.000033746725,0.00008401362,0.00014892155,8.5714376e-8,0.000111342066],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000065315064,0.00021119611,0.00024639204,0.000019521038,0.00008794152,0.0000074399168,0.00011210656,0.00015163833,0.0011853375],"category_scores_gemma":[0.0000016014645,0.00018537638,0.000033524677,0.000056168898,0.00079205824,0.000046780788,0.000099738034,0.00010634934,0.00028715754],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040621388,0.00010023876,0.0039456272,0.0000023907824,0.00001743158,6.885032e-7,0.00020483881,4.9413813e-7,0.9732179,0.0000022618553,0.001239524,0.02122795],"study_design_scores_gemma":[0.0018435733,0.00020172025,0.07153424,0.000010357817,0.000055837176,0.000105036444,0.00027598903,0.000022165663,0.87875986,0.00020501482,0.046463426,0.00052276236],"about_ca_topic_score_codex":0.00006069408,"about_ca_topic_score_gemma":0.000010890204,"teacher_disagreement_score":0.09445805,"about_ca_system_score_codex":0.000045256686,"about_ca_system_score_gemma":0.0000024462192,"threshold_uncertainty_score":0.9997277},"labels":[],"label_agreement":null},{"id":"W2160038651","doi":"10.1128/aem.70.9.5704-5707.2004","title":"Production of Minicellulosomes from <i>Clostridium cellulovorans</i> in <i>Bacillus subtilis</i> WB800","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Bacillus subtilis; Clostridium; Cellulase; Cellulosome; Biology; Bacillaceae; Microbiology; Biochemistry; Chemistry; Bacteria; Enzyme; Genetics; Clostridium thermocellum","score_opus":0.0036329854089397168,"score_gpt":0.14344563202621785,"score_spread":0.13981264661727813,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160038651","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976793,0.0011278221,0.000026181418,0.00014900239,0.00041671307,0.00018036002,0.00009240952,0.000038351714,0.0002898913],"genre_scores_gemma":[0.99827504,0.0010232129,0.0002361459,0.000060735656,0.000067078516,0.0000067533656,0.00027965126,0.0000138121695,0.00003754043],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99932146,0.000009227831,0.00020833377,0.00026786292,0.000027325821,0.0001657631],"domain_scores_gemma":[0.99979216,0.000007959169,0.000031615877,0.00013407394,0.0000010938993,0.00003312427],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000046931695,0.00014371003,0.00017906593,0.00005567615,0.000023048586,0.0000030802003,0.00006259567,0.00014310444,0.00006992767],"category_scores_gemma":[7.3935e-7,0.00013968645,0.0000268596,0.000059212627,0.00019444933,0.00003924519,0.000034056065,0.00012352833,0.000040880408],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025196965,0.00006435572,0.0007014602,0.000038047172,0.000012708525,0.0000010954415,0.00020512332,0.00030771847,0.9975696,0.000010722255,0.00012933766,0.0009346177],"study_design_scores_gemma":[0.00080699584,0.000029940875,0.0011731286,0.000009227745,0.000010521542,0.000011131163,0.00038004032,0.000004859157,0.9858961,0.00015540773,0.01136836,0.00015424748],"about_ca_topic_score_codex":0.000038026647,"about_ca_topic_score_gemma":0.0000064555807,"teacher_disagreement_score":0.0116734775,"about_ca_system_score_codex":0.000057756148,"about_ca_system_score_gemma":0.000004107569,"threshold_uncertainty_score":0.56962484},"labels":[],"label_agreement":null},{"id":"W2160085372","doi":"10.1128/aem.71.12.8460-8465.2005","title":"Enzymatic Ability of <i>Bifidobacterium animalis</i> subsp. <i>lactis</i> To Hydrolyze Milk Proteins: Identification and Characterization of Endopeptidase O","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Peptidase Inhibition and Analysis","field":"Medicine","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Lactococcus lactis; Biochemistry; Bifidobacterium animalis; Biology; Casein; Endopeptidase; Enzyme; Bifidobacterium; Bacteria; Lactobacillus; Lactic acid; Fermentation","score_opus":0.00438836115330988,"score_gpt":0.19191633377414333,"score_spread":0.18752797262083346,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160085372","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99850374,0.000037638165,0.00018024922,0.00042175566,0.000006489864,0.0005093184,0.00024249015,0.000011923911,0.00008639894],"genre_scores_gemma":[0.998194,0.00007352096,0.00036812114,0.0005375206,0.000032721793,0.000040384435,0.0006769976,0.000011014934,0.00006573734],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99905837,0.0000322176,0.00042553997,0.0002905611,0.000054701595,0.00013863547],"domain_scores_gemma":[0.999514,0.000017579901,0.00018216291,0.00018659743,0.000008600835,0.00009105771],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001401819,0.00013606239,0.0003270881,0.00009287948,0.000037317983,0.0000059279487,0.00003925259,0.000088959285,0.00012261965],"category_scores_gemma":[0.0000061423634,0.00012596737,0.000044802735,0.00008366922,0.00022326544,0.00006257428,0.00005560964,0.00006714642,0.00001712032],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000121158795,0.00024371679,0.0024664004,0.000111656045,0.00003138996,5.357051e-7,0.0002776002,8.117898e-7,0.9946116,0.00002814509,0.00001688728,0.0020900706],"study_design_scores_gemma":[0.00076852716,0.000115465686,0.06848624,0.00004756541,0.00006193376,0.00004297081,0.0001075285,0.000018931427,0.9292544,0.000009095673,0.0009861293,0.00010119567],"about_ca_topic_score_codex":0.0000102137365,"about_ca_topic_score_gemma":0.0000030667768,"teacher_disagreement_score":0.06601985,"about_ca_system_score_codex":0.00003446852,"about_ca_system_score_gemma":0.000007538537,"threshold_uncertainty_score":0.51368004},"labels":[],"label_agreement":null},{"id":"W2160379773","doi":"10.1128/aem.05561-11","title":"Inhibition of Escherichia coli CFT073 <i>fliC</i> Expression and Motility by Cranberry Materials","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Urinary Tract Infections Management","field":"Medicine","cited_by":118,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Université Paris-Est Créteil Val-de-Marne; Natural Sciences and Engineering Research Council of Canada; Partenariat Canadien Contre Le Cancer; Canada Research Chairs","keywords":"Flagellum; Escherichia coli; Flagellin; Motility; Microbiology; Swarming motility; Bacteria; Biology; Virulence; Reporter gene; Gene expression; Biofilm; Gene; Quorum sensing; Biochemistry; Cell biology; Genetics","score_opus":0.008100546349023442,"score_gpt":0.18332662686821746,"score_spread":0.17522608051919403,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160379773","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99761397,0.0001456613,0.0000641145,0.000021686554,0.00003836412,0.00032098367,0.000084686915,0.000016952838,0.0016935928],"genre_scores_gemma":[0.998587,0.00028321083,0.0005568504,0.00022336244,0.0000125547285,0.000027390173,0.00021671448,0.000010532491,0.000082363236],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99941987,0.000023655917,0.0001868008,0.00022393781,0.000021918131,0.00012379684],"domain_scores_gemma":[0.99974376,0.000010519138,0.00007250738,0.00012553207,0.0000013444483,0.000046359328],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007665924,0.00011524853,0.00020174318,0.000024318259,0.000046725043,0.0000023049713,0.000019209387,0.000096631644,0.00038900346],"category_scores_gemma":[0.0000010836212,0.000102338134,0.000015969905,0.000019531879,0.00026443612,0.000031086598,0.000100519515,0.00006271109,0.000013055195],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012759023,0.00074135896,0.0044466984,0.00005316127,0.000023558834,0.0000019668287,0.00017294785,6.339195e-8,0.99382526,0.00003136886,0.0003053554,0.00027067136],"study_design_scores_gemma":[0.00095401,0.00047412078,0.045767143,0.000014145707,0.000051262323,0.000037690243,0.00018175814,3.873537e-7,0.95002085,0.00007606871,0.0023422404,0.000080298516],"about_ca_topic_score_codex":0.000027843384,"about_ca_topic_score_gemma":4.4585457e-7,"teacher_disagreement_score":0.043804385,"about_ca_system_score_codex":0.000020621337,"about_ca_system_score_gemma":0.0000020688628,"threshold_uncertainty_score":0.4259315},"labels":[],"label_agreement":null},{"id":"W2160474225","doi":"10.1128/aem.68.3.1102-1108.2002","title":"Engineering of a <i>Bacillus subtilis</i> Strain with Adjustable Levels of Intracellular Biotin for Secretory Production of Functional Streptavidin","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biotin and Related Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biotin; Streptavidin; Bacillus subtilis; Biochemistry; Operon; Intracellular; Biology; Chemistry; Escherichia coli; Bacteria; Genetics","score_opus":0.007126187372585022,"score_gpt":0.14952248710758123,"score_spread":0.1423962997349962,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160474225","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99684924,0.0018853362,0.00059141,0.000023085593,0.000056451696,0.00020295708,0.00033304482,0.0000027261037,0.00005577196],"genre_scores_gemma":[0.9984492,0.00034849223,0.0007796563,0.000009176323,0.000035387562,0.000008111078,0.00017351861,0.00000995224,0.00018648015],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99946296,0.000008533638,0.00017670871,0.0002093912,0.000023292863,0.00011912136],"domain_scores_gemma":[0.9997691,0.000009122108,0.0001002459,0.00009640489,0.0000068664126,0.000018252797],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006332156,0.00010651447,0.00017079322,0.000024810106,0.000024667717,6.81331e-7,0.000036339083,0.00013942234,0.000035247507],"category_scores_gemma":[0.000003982952,0.00008900227,0.000035052846,0.000024655632,0.0002685502,0.0000016679013,0.00003778169,0.00004982592,4.1328852e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007759174,0.00008807068,0.0003741965,0.00008633166,0.0001224038,1.13834204e-7,0.00007828478,0.00033377198,0.9975879,0.000049583847,0.00012546183,0.0010762407],"study_design_scores_gemma":[0.00059788715,0.00030761203,0.001275618,0.000011761564,0.000036191897,0.000016911416,0.00033365202,0.000029160352,0.99492484,0.000003781556,0.002365271,0.000097317294],"about_ca_topic_score_codex":0.0000019326567,"about_ca_topic_score_gemma":0.0000014753841,"teacher_disagreement_score":0.0026631132,"about_ca_system_score_codex":0.000006544016,"about_ca_system_score_gemma":0.000004650398,"threshold_uncertainty_score":0.36294073},"labels":[],"label_agreement":null},{"id":"W2160565740","doi":"10.1128/aem.72.1.361-367.2006","title":"Mercury Analysis of Acid- and Alkaline-Reduced Biological Samples: Identification of <i>meta</i> -Cinnabar as the Major Biotransformed Compound in Algae","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mercury impact and mitigation studies","field":"Environmental Science","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Mercury (programming language); Thiol; Chemistry; Algae; Environmental chemistry; Biotransformation; Selenastrum; Organic chemistry; Biology; Botany; Enzyme; Toxicity","score_opus":0.014793971510065838,"score_gpt":0.2279900662545681,"score_spread":0.21319609474450227,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160565740","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99840057,0.00060836866,0.00007293782,0.0001533974,0.000015985988,0.00025027388,0.00020340591,0.0000050303875,0.00029003154],"genre_scores_gemma":[0.99895704,0.00045061504,0.00009946317,0.00015566922,0.0000059379327,0.000025298736,0.00027646602,0.0000050383724,0.000024489302],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989777,0.000059464026,0.00044888002,0.00028022996,0.00005481065,0.00017891724],"domain_scores_gemma":[0.99957687,0.00008303029,0.0001672075,0.0001425912,0.0000012880051,0.000029021643],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002480784,0.00015457948,0.00041376989,0.000074460426,0.00008170167,0.0000054366737,0.0001036172,0.0000933906,0.00032068568],"category_scores_gemma":[0.000004273059,0.000101055375,0.00008276316,0.00022273819,0.0012596532,0.000038373033,0.000099505596,0.00006734105,0.000012304799],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024954858,0.0000795148,0.030801155,0.000004697727,0.00030996022,3.062897e-7,0.00036213122,0.000050017417,0.96773684,0.00019493047,0.000043781893,0.00039171858],"study_design_scores_gemma":[0.0006822071,0.000078149715,0.5270338,0.0000022728286,0.0010833368,0.000015789608,0.0013414329,0.00003110254,0.46756983,0.00065538316,0.0012999562,0.00020670367],"about_ca_topic_score_codex":0.0006630565,"about_ca_topic_score_gemma":0.00017242752,"teacher_disagreement_score":0.500167,"about_ca_system_score_codex":0.00002614171,"about_ca_system_score_gemma":0.000002353292,"threshold_uncertainty_score":0.4641245},"labels":[],"label_agreement":null},{"id":"W2160581770","doi":"10.1128/aem.03067-12","title":"Genetic Relationships of Vibrio parahaemolyticus Isolates from Clinical, Human Carrier, and Environmental Sources in Thailand, Determined by Multilocus Sequence Analysis","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Vibrio parahaemolyticus; Biology; Multilocus sequence typing; Horizontal gene transfer; Genetic diversity; Shrimp; Genetics; Vibrio; Phylogenetic tree; Population; Locus (genetics); Microbiology; Genotype; Gene; Bacteria; Ecology","score_opus":0.01358391817164683,"score_gpt":0.2407548752996427,"score_spread":0.22717095712799587,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160581770","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970775,0.0019211941,0.000030899922,0.00002122351,0.000011682232,0.00028640305,0.0006336727,0.0000035348285,0.000013880824],"genre_scores_gemma":[0.9966395,0.0016023985,0.00029796414,0.00004831018,0.000024430494,0.00004543843,0.0012649548,0.000014016667,0.00006302078],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99867123,0.00012472228,0.0003951909,0.00051839434,0.00003474576,0.00025574272],"domain_scores_gemma":[0.9994817,0.000071259405,0.00012681322,0.00022997354,0.0000017388091,0.00008855012],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001051453,0.00019960628,0.00035516432,0.000054724518,0.000105475265,0.000014923494,0.000118969045,0.00021328492,0.000059515034],"category_scores_gemma":[0.0000099947265,0.00018098445,0.000061015446,0.000038743427,0.0008722659,0.000006464682,0.00028847865,0.00013672245,0.0000065193935],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019654577,0.000044205022,0.3990233,0.0000026330229,0.00014693715,6.0794605e-7,0.0000711748,0.0000053877334,0.600165,3.2319574e-7,0.000028324372,0.0004924702],"study_design_scores_gemma":[0.0014280111,0.0002921881,0.8523913,0.0000050927015,0.00014498134,0.000009004032,0.0008211086,0.0001383041,0.14378159,0.000058917823,0.000610451,0.00031905007],"about_ca_topic_score_codex":0.0003213903,"about_ca_topic_score_gemma":0.0001378535,"teacher_disagreement_score":0.4563834,"about_ca_system_score_codex":0.000018009283,"about_ca_system_score_gemma":0.0000052165465,"threshold_uncertainty_score":0.7380332},"labels":[],"label_agreement":null},{"id":"W2160757514","doi":"10.1128/aem.00696-07","title":"Phylogenetic Analysis of Deformed Wing Virus Genotypes from Diverse Geographic Origins Indicates Recent Global Distribution of the Virus","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":92,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Hungarian Scientific Research Fund","keywords":"Phylogenetic tree; Biology; Deformed wing virus; Genetics; Phylogenetics; Genome; Virus; Gene; Varroa destructor; Zoology","score_opus":0.009798377036434453,"score_gpt":0.20254132213672543,"score_spread":0.19274294510029097,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160757514","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98971355,0.0006037272,0.0000057916823,0.000026987007,0.00002396964,0.00013270456,0.0094641065,0.0000052309883,0.000023944905],"genre_scores_gemma":[0.9964388,0.001695244,0.000015376214,0.000040325125,0.000015844293,0.0000033505135,0.0017894473,4.3185227e-7,0.000001173295],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99924684,0.000032945227,0.00020066691,0.0002147814,0.00007180283,0.00023297234],"domain_scores_gemma":[0.99966955,0.00011109695,0.00012367502,0.000050733634,0.000004019584,0.000040917348],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001233108,0.000110668276,0.00022975543,0.000015155766,0.00014390123,0.000003858061,0.00017250302,0.00008856215,0.00008608482],"category_scores_gemma":[0.0000059575336,0.0000424326,0.00008253027,0.00033190168,0.000526408,0.000012751295,0.00023461161,0.00006318664,0.0000037336806],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037163994,0.00006211964,0.18213752,0.0000012253696,0.0002503735,3.3132858e-7,0.000027876844,0.0000060743077,0.8067691,0.000022441136,0.000007905437,0.010677918],"study_design_scores_gemma":[0.000091667396,0.000040538023,0.8083225,0.0000018149035,0.00014320917,8.4130505e-7,0.00023079848,0.0000022248964,0.18888435,0.0000649303,0.0021517782,0.00006534824],"about_ca_topic_score_codex":0.0016841997,"about_ca_topic_score_gemma":0.0028761146,"teacher_disagreement_score":0.626185,"about_ca_system_score_codex":0.00005771019,"about_ca_system_score_gemma":0.000002339562,"threshold_uncertainty_score":0.25460175},"labels":[],"label_agreement":null},{"id":"W2160835043","doi":"10.1128/aem.00223-06","title":"Anaerobic Respiration on Tellurate and Other Metalloids in Bacteria from Hydrothermal Vent Fields in the Eastern Pacific Ocean","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Geochemistry and Elemental Analysis","field":"Earth and Planetary Sciences","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; Université du Québec à Montréal; University of Washington","keywords":"Tellurate; Hydrothermal vent; Anaerobic respiration; Biogeochemical cycle; Anaerobic bacteria; Environmental chemistry; Chemistry; Bacteria; Hydrothermal circulation; Biology; Paleontology","score_opus":0.00500223827171744,"score_gpt":0.1524498191880469,"score_spread":0.14744758091632945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160835043","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984623,0.00015028432,0.0000016763088,0.0001026043,0.000013848493,0.00008621494,0.00009057141,0.0000025513991,0.0010899256],"genre_scores_gemma":[0.9989547,0.000020231057,0.0000224773,0.000391229,0.000027863063,0.0000014540626,0.000532544,0.0000017331045,0.000047775942],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994505,0.00004387426,0.0001362572,0.00020639581,0.000024607025,0.00013835134],"domain_scores_gemma":[0.99985176,0.000026803276,0.000031438103,0.000074399395,1.8606119e-7,0.000015395037],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000947301,0.00009829599,0.00010407736,0.000025625084,0.00004572059,0.00001673377,0.00005982655,0.00006470364,0.0005203688],"category_scores_gemma":[2.6978117e-7,0.000068635105,0.000015184224,0.000033584583,0.000078151985,0.000022808961,0.000009774926,0.000081687656,0.000031940537],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006567719,0.000054757173,0.7572622,0.0000032145147,0.000011150034,0.0000061661262,0.00026276617,0.0004966505,0.23901646,0.000018018689,0.000024995044,0.0027779925],"study_design_scores_gemma":[0.0007681289,0.00013007804,0.97933877,0.000007603739,0.00001816323,0.0000121944295,0.0011592759,0.00056023995,0.012876864,0.0005633506,0.004349073,0.0002162736],"about_ca_topic_score_codex":0.0020467131,"about_ca_topic_score_gemma":0.0022323162,"teacher_disagreement_score":0.22613959,"about_ca_system_score_codex":0.0000038593616,"about_ca_system_score_gemma":0.000001158152,"threshold_uncertainty_score":0.56976736},"labels":[],"label_agreement":null},{"id":"W2160914057","doi":"10.1128/aem.00683-13","title":"Arsenic Bioremediation by Biogenic Iron Oxides and Sulfides","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Arsenic contamination and mitigation","field":"Environmental Science","cited_by":119,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Canada Excellence Research Chairs, Government of Canada; European Commission","keywords":"Microcosm; Environmental chemistry; Sulfate; Arsenic; Sulfide; Chemistry; Nitrate; Hydrous ferric oxides; Environmental remediation; Bioremediation; Biogeochemical cycle; Sulfide minerals; Ferric; Mackinawite; Sorption; Groundwater; Inorganic chemistry; Contamination; Geology; Adsorption; Ecology","score_opus":0.001535947740232997,"score_gpt":0.1389341022724154,"score_spread":0.1373981545321824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160914057","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981197,0.00019425052,0.00008546643,0.0002759649,0.000032720003,0.00027542782,0.000024263634,0.000023009627,0.00096916774],"genre_scores_gemma":[0.99807024,0.00038587532,0.00028691825,0.00054593105,0.000012969921,0.00004126726,0.00024824686,0.000010381953,0.00039817288],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999265,0.000022246604,0.000157723,0.00031839375,0.000039233262,0.00019737046],"domain_scores_gemma":[0.9997318,0.000031881547,0.000061436185,0.00009494114,5.479878e-7,0.00007940535],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0000642771,0.00013729642,0.00010968395,0.000021970412,0.00011096683,0.000016384307,0.00005677781,0.0001023507,0.0015085181],"category_scores_gemma":[0.0000025109634,0.00012553588,0.000017509054,0.0000331358,0.00044108048,0.000105278035,0.00013741638,0.000063385414,0.0005433832],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000025221245,0.000024832203,0.011447158,0.0000018833068,0.0000045155484,1.522334e-7,0.00014086618,0.0000011866911,0.95779145,0.000066832086,0.0018264648,0.02869213],"study_design_scores_gemma":[0.0026300554,0.00026945697,0.5167461,0.000008321481,0.00007374074,0.0001344209,0.003126679,0.00037061627,0.39954314,0.0021461193,0.07382488,0.0011265045],"about_ca_topic_score_codex":0.0000961425,"about_ca_topic_score_gemma":0.000015682206,"teacher_disagreement_score":0.55824834,"about_ca_system_score_codex":0.00006110468,"about_ca_system_score_gemma":0.0000013804415,"threshold_uncertainty_score":0.99940425},"labels":[],"label_agreement":null},{"id":"W2160934488","doi":"10.1128/aem.00777-09","title":"Effect of Nitrate and Acetylene on <i>nirS</i> , <i>cnorB</i> , and <i>nosZ</i> Expression and Denitrification Activity in <i>Pseudomonas mandelii</i>","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Nova Scotia Department of Agriculture; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Ontario Innovation Trust","keywords":"Denitrification; Acetylene; Gene expression; Nitrate; Chemistry; Gene; Pseudomonas; Molecular biology; Biology; Biochemistry; Food science; Nitrogen; Genetics; Organic chemistry; Bacteria","score_opus":0.0028898616032187446,"score_gpt":0.17995934751485013,"score_spread":0.17706948591163138,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160934488","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986076,0.00038394445,0.0000067753635,0.00007793836,0.000013563566,0.00038270568,0.000026537678,0.000011122345,0.0004898642],"genre_scores_gemma":[0.9984619,0.00095314375,0.0002990123,0.00018312562,0.000009786888,0.000016036574,0.000037360664,0.000010679998,0.000028972689],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99892783,0.00010551721,0.00017515688,0.00049196655,0.000054933134,0.00024460323],"domain_scores_gemma":[0.9995998,0.000096626805,0.00008074343,0.00013649343,4.039918e-7,0.000085919346],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020776945,0.00025334826,0.0002989504,0.00004025001,0.00009365594,0.000012513731,0.000057896592,0.0001456212,0.00001672804],"category_scores_gemma":[0.0000014716263,0.00020008197,0.00002120284,0.000046437,0.00038865462,0.00008673039,0.0001217151,0.00012541257,0.00000868437],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040832686,0.00011075672,0.01921276,0.000012752098,0.000006650309,0.000004348121,0.000109862165,0.000004392746,0.96296024,0.000010607534,0.000030098656,0.017129188],"study_design_scores_gemma":[0.002220835,0.0007249827,0.032025058,0.000015489173,0.000029576238,0.000080164325,0.000041181404,0.00001362066,0.9643346,0.00013873327,0.00018321868,0.00019253996],"about_ca_topic_score_codex":0.000031990934,"about_ca_topic_score_gemma":0.0000066202065,"teacher_disagreement_score":0.016936649,"about_ca_system_score_codex":0.000034580273,"about_ca_system_score_gemma":0.0000012444041,"threshold_uncertainty_score":0.8159106},"labels":[],"label_agreement":null},{"id":"W2160943886","doi":"10.1128/aem.00080-09","title":"Effect of pH and Temperature on Denitrification Gene Expression and Activity in <i>Pseudomonas mandelii</i>","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":198,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Nova Scotia Department of Agriculture; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Ontario Innovation Trust","keywords":"Denitrification; Gene expression; Chemistry; Nitrous oxide; Molecular biology; Gene; Biochemistry; Biology; Nitrogen; Organic chemistry","score_opus":0.00289400688578736,"score_gpt":0.17925706209454315,"score_spread":0.17636305520875578,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160943886","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99936116,0.00015544402,0.0000012840401,0.00003927144,0.000009558568,0.00024552055,0.000014393672,0.0000058429787,0.00016749988],"genre_scores_gemma":[0.999323,0.00023084824,0.00028936876,0.000067464076,0.000007754676,0.000008824921,0.00004070983,0.000005440855,0.00002656318],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993675,0.00005217659,0.000097610086,0.00030697044,0.00003296333,0.00014283031],"domain_scores_gemma":[0.9997884,0.000035536134,0.000040814208,0.00009273219,1.7091776e-7,0.00004236321],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000089592984,0.0001497423,0.00017504647,0.00002633065,0.00005465839,0.000005714312,0.000038617116,0.000112300695,0.000022320002],"category_scores_gemma":[7.2241386e-7,0.00011124777,0.000014670467,0.000027735383,0.00017929857,0.00004045137,0.000058447346,0.000084001054,0.000008217019],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002632548,0.00008137521,0.012465521,0.0000044917956,0.0000036843383,0.0000030183155,0.00007758144,0.000006180097,0.97845125,0.0000041734124,0.000013673339,0.008625804],"study_design_scores_gemma":[0.0011396549,0.00043307227,0.09785252,0.000005648862,0.000011192763,0.000038380385,0.000016235437,0.00000501054,0.90030485,0.000049329643,0.000048994756,0.00009512347],"about_ca_topic_score_codex":0.00001084625,"about_ca_topic_score_gemma":0.0000018813645,"teacher_disagreement_score":0.085387,"about_ca_system_score_codex":0.00003090216,"about_ca_system_score_gemma":6.077605e-7,"threshold_uncertainty_score":0.45365524},"labels":[],"label_agreement":null},{"id":"W2161031705","doi":"10.1128/aem.03909-14","title":"In-Frame and Unmarked Gene Deletions in Burkholderia cenocepacia via an Allelic Exchange System Compatible with Gateway Technology","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Burkholderia cenocepacia; Genetics; Biology; Allele; Frame (networking); Gene; Gateway (web page); Computational biology; Computer science; World Wide Web; Telecommunications","score_opus":0.008810419223934681,"score_gpt":0.22309736912953732,"score_spread":0.21428694990560263,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161031705","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976295,0.0011235523,0.0001588484,0.000264234,0.000020018555,0.00053230795,0.000033652897,0.000026459307,0.0002113913],"genre_scores_gemma":[0.9960777,0.00018223877,0.003262511,0.00011189389,0.000022851847,0.00009147688,0.00019869905,0.000018667566,0.00003395596],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99900264,0.00003864939,0.00018947979,0.00037741073,0.000048488495,0.00034335212],"domain_scores_gemma":[0.9995968,0.000025746443,0.000041875006,0.00018406552,0.0000040360387,0.0001475092],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012891895,0.00016307346,0.0003417621,0.00021366276,0.000037862952,0.0000065301783,0.00006321364,0.00015453159,0.000034155335],"category_scores_gemma":[0.000003907514,0.00013536638,0.000008263205,0.00013271988,0.0005056828,0.000045588993,0.000109468136,0.0001907657,0.000018389457],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032462712,0.0001537206,0.019570753,0.000062277366,0.000017247085,0.000049440296,0.00028080732,0.000011789613,0.97827613,0.000104358805,0.00003919402,0.001109632],"study_design_scores_gemma":[0.07661016,0.0161458,0.3648136,0.000852204,0.00029096953,0.018058274,0.046378776,0.0033111654,0.39171275,0.0025868728,0.07572296,0.0035164459],"about_ca_topic_score_codex":0.00010430573,"about_ca_topic_score_gemma":0.00017854577,"teacher_disagreement_score":0.5865634,"about_ca_system_score_codex":0.00016524442,"about_ca_system_score_gemma":0.000017583372,"threshold_uncertainty_score":0.5520081},"labels":[],"label_agreement":null},{"id":"W2161060395","doi":"10.1128/aem.69.9.5170-5177.2003","title":"Impact of Seasonal Variations and Nutrient Inputs on Nitrogen Cycling and Degradation of Hexadecane by Replicated River Biofilms","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":92,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Environment and Climate Change Canada; McGill University; University of Victoria; Biotechnology Research Institute","funders":"","keywords":"Biofilm; Nutrient; Mineralization (soil science); Nitrification; Denitrification; Hexadecane; Nutrient cycle; Nitrogen cycle; Environmental chemistry; Nitrogen; Ecology; Biology; Cycling; Environmental science; Chemistry; Bacteria; Soil water","score_opus":0.005026089200837008,"score_gpt":0.1922579115442703,"score_spread":0.1872318223434333,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161060395","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99928385,0.00014716333,0.000043583263,0.0000149435855,0.000007909142,0.00019066167,0.00017003733,0.000005080051,0.00013678458],"genre_scores_gemma":[0.9981969,0.0001582689,0.0013390259,0.000026695014,0.0000026578603,0.000007629568,0.00023255794,0.0000082258075,0.00002803447],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993102,0.00003385374,0.00017156226,0.00028748106,0.00004211446,0.00015481196],"domain_scores_gemma":[0.99970007,0.00003287451,0.00009706353,0.00010293224,7.600684e-7,0.000066292414],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006988105,0.00014136067,0.00017422435,0.000026630214,0.000064175074,0.0000038942726,0.000037761565,0.00008260296,0.0001262745],"category_scores_gemma":[0.000001976813,0.000113766124,0.00002923764,0.00004673001,0.0004117004,0.00003317522,0.000063090454,0.000049482576,0.000007699361],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043285763,0.00015921934,0.122491844,0.0000028157021,0.00004853735,4.2106217e-7,0.00009164938,0.000007872403,0.87627655,0.00012632483,0.000042207903,0.00070925424],"study_design_scores_gemma":[0.001437449,0.0004136046,0.07238068,0.0000054239513,0.00006096305,0.00006254806,0.000044948083,0.000036724297,0.9246433,0.00047553438,0.0002588816,0.00017995693],"about_ca_topic_score_codex":0.00007611402,"about_ca_topic_score_gemma":0.0000014225362,"teacher_disagreement_score":0.050111167,"about_ca_system_score_codex":0.000053150427,"about_ca_system_score_gemma":0.000002971816,"threshold_uncertainty_score":0.4639248},"labels":[],"label_agreement":null},{"id":"W2161088533","doi":"10.1128/aem.01526-06","title":"Synergistic Inhibition of Microbial Sulfide Production by Combinations of the Metabolic Inhibitor Nitrite and Biocides","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Metal Extraction and Bioleaching","field":"Engineering","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Biocide; Sulfite; Nitrite; Sulfate-reducing bacteria; Chemistry; Bacteria; Sulfide; Microbiology; Nitrite reductase; Biochemistry; Sulfate; Food science; Biology; Organic chemistry; Nitrate","score_opus":0.002182267386615794,"score_gpt":0.14396055244186765,"score_spread":0.14177828505525186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161088533","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99839896,0.00091422506,0.00010323342,0.000034311182,0.00011438511,0.00012829198,0.000093528804,0.000013356836,0.00019973119],"genre_scores_gemma":[0.9993955,0.0002807729,0.00009146295,0.0000145004005,0.000028774872,0.000005192573,0.00013141459,0.0000078588555,0.000044512482],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995821,0.000018663844,0.00018566697,0.00011222472,0.000020507892,0.00008080057],"domain_scores_gemma":[0.9998499,0.000015941036,0.000056852434,0.00006318884,0.0000018464074,0.000012279687],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005759905,0.00008639711,0.00012804258,0.000034602046,0.000053312287,0.0000037052907,0.000024310872,0.00006459614,0.0000075250905],"category_scores_gemma":[0.0000023726232,0.000068081754,0.000023093706,0.000042772677,0.00022738989,0.000027343885,0.000027197138,0.00007370449,0.0000013797081],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000040669856,0.000060173552,0.00037005637,0.00001839031,0.000011810739,4.1782705e-8,0.00002271794,0.00005335744,0.9973113,0.00050485024,0.0003092526,0.0013339993],"study_design_scores_gemma":[0.00033079038,0.000010529826,0.004408376,0.000007985793,0.000024916559,0.000013071675,0.000062344436,0.00001754348,0.99123085,0.00016669239,0.0036532374,0.000073677606],"about_ca_topic_score_codex":0.000031533604,"about_ca_topic_score_gemma":0.0000070213828,"teacher_disagreement_score":0.006080448,"about_ca_system_score_codex":0.000011038781,"about_ca_system_score_gemma":0.0000013929398,"threshold_uncertainty_score":0.27762932},"labels":[],"label_agreement":null},{"id":"W2161201226","doi":"10.1128/aem.71.9.5341-5347.2005","title":"Dependence of Arbuscular-Mycorrhizal Fungi on Their Plant Host for Palmitic Acid Synthesis","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":155,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Cégep de Rivière-du-Loup; Université Laval","funders":"","keywords":"Biology; Spore; Fatty acid; Botany; Mycelium; Mycorrhiza; Hypha; Palmitic acid; Germination; Phycomycetes; Fatty acid synthesis; Spore germination; Biochemistry; Symbiosis; Bacteria; Inoculation; Horticulture","score_opus":0.0062209671541149595,"score_gpt":0.15916850058864193,"score_spread":0.15294753343452697,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161201226","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9897331,0.000494178,0.00001533817,0.00014353004,0.000063902306,0.00023996232,0.008630894,0.000014918639,0.0006641782],"genre_scores_gemma":[0.9966255,0.0009798048,0.00011332806,0.00032702222,0.000110543326,0.000053446052,0.0017550441,0.0000016179376,0.0000337289],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992922,0.000021186082,0.00017139575,0.00026468936,0.000028414273,0.00022212014],"domain_scores_gemma":[0.99879056,0.001036695,0.000066412795,0.00005102737,0.0000020075254,0.000053316395],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000067210436,0.00014960096,0.00019249931,0.000012127557,0.00011355852,0.000007811879,0.00011784334,0.00011383045,0.0010468126],"category_scores_gemma":[0.000009989203,0.00006401048,0.00007317171,0.000027274988,0.000029044015,0.000025996193,0.000041519743,0.00008108045,0.0001317693],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010897474,0.00009324766,0.0038347067,0.00000509529,0.00001887159,5.790911e-7,0.000028243947,0.0000049267373,0.9854446,0.0006243847,0.00032712414,0.0095092235],"study_design_scores_gemma":[0.00010647385,0.00029929154,0.010047975,0.000028503617,0.000032988602,0.00012463544,0.00037657705,0.00004770369,0.9308695,0.00013485663,0.057676174,0.00025531667],"about_ca_topic_score_codex":0.000022141026,"about_ca_topic_score_gemma":0.000025176687,"teacher_disagreement_score":0.05734905,"about_ca_system_score_codex":0.000016417272,"about_ca_system_score_gemma":0.0000016700525,"threshold_uncertainty_score":0.99986637},"labels":[],"label_agreement":null},{"id":"W2161490340","doi":"10.1128/aem.00958-13","title":"Whole-Genome Transcriptional Analysis of Escherichia coli during Heat Inactivation Processes Related to Industrial Cooking","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Escherichia coli; Heat shock; Chemistry; Materials science; Analytical Chemistry (journal); Gene; Chromatography; Heat shock protein; Biochemistry","score_opus":0.004851425384541905,"score_gpt":0.16923982055020204,"score_spread":0.16438839516566012,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161490340","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991605,0.00012767485,0.000050674676,0.00013012845,0.00003909772,0.00027250222,0.0001606047,0.000006684567,0.000052091724],"genre_scores_gemma":[0.99802864,0.000115064184,0.00013524256,0.00010825492,0.000032027085,0.0000375462,0.0014725006,0.0000111988675,0.000059512688],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992263,0.000017779337,0.00023090956,0.00031878578,0.000026131062,0.00018014353],"domain_scores_gemma":[0.9997579,0.0000050663793,0.000057630074,0.00012479909,0.000007811729,0.00004681303],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000039792412,0.00013574939,0.00021201467,0.00010074917,0.000060266415,0.000008603096,0.00009076766,0.0003348558,0.000085055406],"category_scores_gemma":[0.000004315264,0.0001310353,0.000040223003,0.0001826436,0.0001529722,0.0000030991976,0.00009275409,0.00008267645,0.000007874052],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006283586,0.000055409288,0.0018249478,0.000007873487,0.00025845584,1.4267643e-7,0.000051891326,0.0001334217,0.99735034,0.000019953413,0.0000096467265,0.0002251029],"study_design_scores_gemma":[0.00060199463,0.00020086722,0.06165945,0.0000030006313,0.000104504164,0.0000054964216,0.00015809845,0.000004766014,0.93219686,0.000017614917,0.0048677297,0.00017964399],"about_ca_topic_score_codex":0.000020340367,"about_ca_topic_score_gemma":0.000007537943,"teacher_disagreement_score":0.06515349,"about_ca_system_score_codex":0.000018038505,"about_ca_system_score_gemma":0.000012740848,"threshold_uncertainty_score":0.5343464},"labels":[],"label_agreement":null},{"id":"W2161538004","doi":"10.1128/aem.67.10.4828-4833.2001","title":"<i>Streptococcus suis</i> Serotypes Characterized by Analysis of Chaperonin 60 Gene Sequences","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":110,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Centre for Disease Control; University of British Columbia; Plant Biotechnology Institute; Université de Montréal; Biotechnology Research Institute","funders":"","keywords":"Biology; Chaperonin; Genetics; Phylogenetic tree; Serotype; Streptococcus suis; Gene; 16S ribosomal RNA; Ribosomal RNA; Phylogenetics; Sequence analysis; Microbiology; Virulence","score_opus":0.006788126230929497,"score_gpt":0.21498501681734927,"score_spread":0.20819689058641977,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161538004","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99830365,0.0003983794,0.00003976655,0.00004106369,0.000020487176,0.00040335953,0.00023802114,0.000017824761,0.0005374332],"genre_scores_gemma":[0.99694765,0.0008356488,0.000100073456,0.00018444231,0.000020328374,0.00010653161,0.0015307665,0.000009340929,0.00026524122],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992605,0.0000144275855,0.00021057283,0.0002935547,0.000029428602,0.00019151212],"domain_scores_gemma":[0.99967057,0.000022628956,0.000084392195,0.00014819962,0.000002555181,0.000071636125],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003360805,0.00015461186,0.0004029703,0.00009405912,0.00005806652,0.0000042101387,0.000036321897,0.00010810393,0.0008085951],"category_scores_gemma":[6.984e-7,0.00012304574,0.00009172069,0.00014834949,0.00025171778,0.000020495634,0.000039304836,0.0000657521,0.00002815493],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000517418,0.00018575643,0.30135044,0.000004117364,0.00063237717,0.000005936241,0.000025261883,0.0000013913573,0.69540334,0.000007457588,0.000018882325,0.0023132998],"study_design_scores_gemma":[0.002871054,0.0005040533,0.4862338,0.000008992476,0.0018549314,0.00013854256,0.00019264115,0.000019133577,0.4897948,0.000020473033,0.018087476,0.00027411667],"about_ca_topic_score_codex":0.000049368773,"about_ca_topic_score_gemma":0.000004068269,"teacher_disagreement_score":0.20560856,"about_ca_system_score_codex":0.00003748277,"about_ca_system_score_gemma":0.000005497981,"threshold_uncertainty_score":0.88535494},"labels":[],"label_agreement":null},{"id":"W2161558410","doi":"10.1128/aem.01640-08","title":"Pyrosequencing of the Chaperonin-60 Universal Target as a Tool for Determining Microbial Community Composition","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":108,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health; University of Saskatchewan; Agriculture and Agri-Food Canada; University of Manitoba","funders":"","keywords":"Pyrosequencing; Amplicon; Biology; Library; 16S ribosomal RNA; Microbial population biology; Metagenomics; Genetics; Replicate; Computational biology; Gene; Bacteria; Polymerase chain reaction","score_opus":0.0055229849238980595,"score_gpt":0.202230784690291,"score_spread":0.19670779976639294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161558410","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988764,0.00009714276,0.00025514397,0.00009753883,0.0000523622,0.00031619842,0.00016820867,0.000004719409,0.00013232153],"genre_scores_gemma":[0.9970894,0.000045726978,0.001043946,0.0011473676,0.00004163734,0.0000053395866,0.0005748081,0.00000972878,0.000042054835],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993558,0.000056905872,0.00016756046,0.00019062849,0.000015236303,0.00021387357],"domain_scores_gemma":[0.9996673,0.000014615494,0.00009512389,0.00019025014,0.0000036865056,0.000029028675],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000108133216,0.00013276885,0.00015370415,0.000017351103,0.00027163912,0.0000053795457,0.0001486731,0.00015423204,0.000009479375],"category_scores_gemma":[0.0000024545616,0.000113336835,0.00006156377,0.000018944558,0.0002450281,0.0000027095261,0.00011144968,0.00012458688,0.0000021871074],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009216916,0.00006860615,0.00045422415,0.000012177216,0.000014768555,2.3300191e-7,0.00020786893,0.000015756506,0.99818933,0.00011797896,0.00012487869,0.00070199557],"study_design_scores_gemma":[0.0010863502,0.00052750873,0.011143342,0.000011842408,0.000020813259,0.00009456342,0.00034281483,0.000006011648,0.98241854,0.00012935784,0.004051782,0.00016707707],"about_ca_topic_score_codex":0.000015742058,"about_ca_topic_score_gemma":0.0000052333266,"teacher_disagreement_score":0.015770806,"about_ca_system_score_codex":0.000030417796,"about_ca_system_score_gemma":0.000024615974,"threshold_uncertainty_score":0.4621742},"labels":[],"label_agreement":null},{"id":"W2161629438","doi":"10.1128/aem.72.1.221-227.2006","title":"Effect of Simultaneous Inoculation with Yeast and Bacteria on Fermentation Kinetics and Key Wine Parameters of Cool-Climate Chardonnay","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fermentation and Sensory Analysis","field":"Agricultural and Biological Sciences","cited_by":105,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Malolactic fermentation; Winemaking; Wine; Oenococcus oeni; Food science; Chemistry; Wine fault; Ethanol fermentation; Fermentation; Yeast; Acetaldehyde; Fructose; Fermentation in winemaking; Lactic acid; Free amino nitrogen; Yeast in winemaking; Malic acid; Ethanol; Bacteria; Biochemistry; Citric acid; Biology; Saccharomyces cerevisiae","score_opus":0.002934817677853341,"score_gpt":0.1602715242194146,"score_spread":0.15733670654156126,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161629438","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99964094,0.000017865317,0.0000015594197,0.000026296046,0.0000061117935,0.00013804891,0.00013280376,0.0000038456524,0.000032540698],"genre_scores_gemma":[0.99912965,0.00006012193,0.00008123713,0.000040723906,0.000009175221,0.0000033819306,0.0006635011,9.1373676e-7,0.000011302094],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995707,0.000039135502,0.00012830363,0.00015381898,0.000025901601,0.00008210856],"domain_scores_gemma":[0.99979854,0.000074442425,0.00008477787,0.000020742516,0.000001711531,0.000019809797],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000042693613,0.00009168366,0.00015512445,0.000011326175,0.000039123242,0.0000057145585,0.000017913948,0.000046061246,0.000037800935],"category_scores_gemma":[8.970937e-7,0.000040233735,0.000013335823,0.00003099793,0.00018049948,0.000014841091,0.000017652525,0.000024287683,0.0000010345082],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002853759,0.00003910504,0.00936885,0.000012910827,0.000013206897,5.0484607e-7,0.000049058177,0.00006998762,0.9833127,0.000015866795,0.0000013878694,0.0068309973],"study_design_scores_gemma":[0.00082546845,0.0018724559,0.39575654,0.000011188831,0.00007070241,0.00001912919,0.00022965315,0.00013942971,0.60085136,0.000011948483,0.00008003844,0.00013208832],"about_ca_topic_score_codex":0.000036816244,"about_ca_topic_score_gemma":0.000017728764,"teacher_disagreement_score":0.3863877,"about_ca_system_score_codex":0.000006460844,"about_ca_system_score_gemma":2.238866e-7,"threshold_uncertainty_score":0.16406842},"labels":[],"label_agreement":null},{"id":"W2161684585","doi":"10.1128/aem.00258-07","title":"Use of Selective Capture of Transcribed Sequences To Identify Genes Preferentially Expressed by<i>Streptococcus suis</i>upon Interaction with Porcine Brain Microvascular Endothelial Cells","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Streptococcus suis; Biology; Gene; Virulence; Microbiology; Pathogen; Pathogenesis; Genetics; Immunology","score_opus":0.011151509298067191,"score_gpt":0.23922831893228041,"score_spread":0.22807680963421323,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161684585","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973771,0.000110992754,0.0010462642,0.00003613783,0.000048106114,0.0009479784,0.00035869767,0.000013381684,0.000061335544],"genre_scores_gemma":[0.9987155,0.000075623175,0.0005210498,0.00009412499,0.0000213224,0.000043172106,0.00041785405,0.000018861372,0.00009249836],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990426,0.000028777336,0.00030051853,0.00035403515,0.000056532954,0.00021758492],"domain_scores_gemma":[0.9995447,0.00007049497,0.00012813037,0.00015663552,0.000012760568,0.000087274726],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000066310684,0.00020792813,0.00036781654,0.00009840202,0.000042111595,0.000006014434,0.000042194602,0.00013364291,0.00009156908],"category_scores_gemma":[0.000002189359,0.00015971578,0.00007657456,0.000079825084,0.0001732868,0.000047340942,0.00002579477,0.00010820754,0.000004465515],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00077124935,0.00042719024,0.024024302,0.00003525926,0.00036294298,0.0000049273162,0.0003208305,0.000024923444,0.9722759,0.000005914192,0.000110850306,0.0016356801],"study_design_scores_gemma":[0.0019437766,0.0006704198,0.024336841,0.000036544086,0.00019056494,0.000041253476,0.00036455205,7.994415e-7,0.9701152,0.0000052353307,0.0021657401,0.00012909072],"about_ca_topic_score_codex":0.00035936857,"about_ca_topic_score_gemma":0.00007915703,"teacher_disagreement_score":0.0021607473,"about_ca_system_score_codex":0.00005730492,"about_ca_system_score_gemma":0.000013444882,"threshold_uncertainty_score":0.65130204},"labels":[],"label_agreement":null},{"id":"W2161863191","doi":"10.1128/aem.67.12.5544-5550.2001","title":"Sorption of Fe (Hydr)Oxides to the Surface of <i>Shewanella putrefaciens</i> : Cell-Bound Fine-Grained Minerals Are Not Always Formed De Novo","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":140,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Pacific Northwest National Laboratory; Natural Sciences and Engineering Research Council of Canada","keywords":"Shewanella putrefaciens; Goethite; Hematite; Ferrihydrite; Chemistry; Sorption; Mineral; Oxide minerals; Biomineralization; Shewanella; Chemical engineering; Mineralogy; Inorganic chemistry; Bacteria; Geology; Biochemistry","score_opus":0.006356446469490868,"score_gpt":0.17536306792441259,"score_spread":0.1690066214549217,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161863191","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99797326,0.00007339454,0.00012993554,0.00034234647,0.000052048323,0.00037963188,0.00014855055,0.000009178047,0.00089163287],"genre_scores_gemma":[0.9979069,0.00025829114,0.0005505715,0.00062859594,0.000029832383,0.000008589444,0.000118677286,0.000013956191,0.00048453436],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99886537,0.00004121339,0.0003280067,0.00034024677,0.00007932149,0.00034585013],"domain_scores_gemma":[0.999446,0.000059062313,0.00019976766,0.0002123244,0.000002141871,0.000080754144],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024291014,0.00019727112,0.00025313813,0.000024900715,0.00010486391,0.000009023652,0.0002058362,0.00013437548,0.00037317708],"category_scores_gemma":[0.0000041408553,0.00014638538,0.00006116161,0.000110512745,0.00040306326,0.00003918827,0.00021583105,0.000087699,0.00009019058],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000867237,0.00012112516,0.010819264,0.00001696103,0.000008706989,0.000001442076,0.00040642283,0.0010423687,0.98578876,0.00000885834,0.0012128701,0.00048650752],"study_design_scores_gemma":[0.0006009423,0.00012450089,0.0140759675,0.0000065105796,0.000025154839,0.000039925366,0.00033950433,0.00003672013,0.96574014,0.000055697066,0.018756466,0.00019843831],"about_ca_topic_score_codex":0.00016828785,"about_ca_topic_score_gemma":0.00021750593,"teacher_disagreement_score":0.020048577,"about_ca_system_score_codex":0.000084969906,"about_ca_system_score_gemma":0.0000054432476,"threshold_uncertainty_score":0.59694225},"labels":[],"label_agreement":null},{"id":"W2161907160","doi":"10.1128/aem.00826-06","title":"Diversity of Basidiomycetes in Michigan Agricultural Soils","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":126,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Natural Sciences and Engineering Research Council of Canada; National Science Foundation","keywords":"Biology; Clade; Species richness; Phylogenetic tree; Ribosomal DNA; Internal transcribed spacer; Phylogenetic diversity; Environmental DNA; GenBank; Species diversity; Phylogenetics; Species evenness; Ecology; Botany; Biodiversity; Genetics; Gene","score_opus":0.0031399578196576097,"score_gpt":0.133813994924314,"score_spread":0.1306740371046564,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161907160","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973574,0.00020875741,2.5388977e-7,0.000061334045,0.000033612465,0.00008017981,0.00056834635,0.000007514923,0.0016825566],"genre_scores_gemma":[0.9982645,0.00017187625,0.000022119488,0.000051612293,0.000038252783,0.000002783684,0.0013933934,3.1307005e-7,0.000055166736],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99955887,0.00001644345,0.00011918764,0.00015051992,0.000018723282,0.00013623222],"domain_scores_gemma":[0.9997644,0.00015608154,0.000040548606,0.000018354584,9.702428e-7,0.000019646293],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000033013093,0.000081135775,0.00011978412,0.000008780515,0.00012921376,0.0000029756816,0.00006767778,0.00006842187,0.00048336087],"category_scores_gemma":[0.0000010342832,0.000033766355,0.000028721552,0.000043208966,0.000027802442,0.000024604065,0.00016952399,0.000060137743,0.00003476995],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000010785032,0.000047564583,0.19990799,0.0000012225919,0.0000027551025,7.1322825e-7,0.00003725596,0.000002613173,0.7990609,0.0003214982,0.0001437546,0.00046296229],"study_design_scores_gemma":[0.00010425171,0.00006621054,0.9167152,0.000006671471,0.000006394109,0.000045956454,0.0005736754,0.0000022045842,0.07691399,0.0005436577,0.0048801983,0.00014158862],"about_ca_topic_score_codex":0.0010193696,"about_ca_topic_score_gemma":0.0005281937,"teacher_disagreement_score":0.7221469,"about_ca_system_score_codex":0.00000767657,"about_ca_system_score_gemma":4.714878e-7,"threshold_uncertainty_score":0.5292463},"labels":[],"label_agreement":null},{"id":"W2162046720","doi":"10.1128/aem.68.5.2148-2154.2002","title":"<i>Tri13</i> and <i>Tri7</i> Determine Deoxynivalenol- and Nivalenol-Producing Chemotypes of <i>Gibberella zeae</i>","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycotoxins in Agriculture and Food","field":"Agricultural and Biological Sciences","cited_by":299,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Saskatchewan","keywords":"Chemotype; Trichothecene; Gibberella zeae; Gibberella; Biology; Vomitoxin; Gene; Mycotoxin; Microbiology; Fusarium; Genetics; Botany; Zearalenone","score_opus":0.007194147209524751,"score_gpt":0.1373614112929061,"score_spread":0.13016726408338136,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162046720","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99368495,0.0038586936,0.0000012685671,0.00022923015,0.000034787656,0.0002070847,0.00011400323,0.000020861715,0.0018491254],"genre_scores_gemma":[0.9940543,0.0049689715,0.0001585625,0.00041026357,0.00010056606,0.000008142728,0.000067614026,0.0000020380587,0.00022953839],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99895895,0.000024667823,0.00023027424,0.00047485865,0.000043310625,0.00026795748],"domain_scores_gemma":[0.99964017,0.00010177005,0.00009836311,0.00006987681,0.0000029589612,0.00008684582],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008424515,0.00021646527,0.00029928365,0.000012493505,0.00013936953,0.0000149210255,0.000103707906,0.0001729009,0.00020583974],"category_scores_gemma":[0.000003791977,0.00009681171,0.00003449443,0.00007181588,0.0005164938,0.00004083541,0.00019284472,0.00012288764,0.000011740525],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013902325,0.00006904164,0.0038543765,0.00001662182,0.000016567037,0.0000012982591,0.00014608215,1.4303107e-7,0.95304334,0.000085017426,0.0003893087,0.042364273],"study_design_scores_gemma":[0.0014301232,0.00096991495,0.04181223,0.00004627129,0.00011851325,0.0007669426,0.0008854978,0.000014898195,0.8253138,0.00049284194,0.12718804,0.00096091354],"about_ca_topic_score_codex":0.000013156434,"about_ca_topic_score_gemma":0.000010487348,"teacher_disagreement_score":0.12772955,"about_ca_system_score_codex":0.000008305579,"about_ca_system_score_gemma":5.23365e-7,"threshold_uncertainty_score":0.3947867},"labels":[],"label_agreement":null},{"id":"W2162078292","doi":"10.1128/aem.67.2.750-759.2001","title":"Antigenic Characterization of the Fish Pathogen <i>Flavobacterium psychrophilum</i>","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":110,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"","keywords":"Biology; Microbiology; Antigen; Immunogold labelling; Molecular mass; Pathogen; Epitope; Aeromonas salmonicida; Flavobacterium; Antiserum; Agglutination (biology); Bacteria; Antibody; Biochemistry","score_opus":0.0031560914901556914,"score_gpt":0.15463877191947079,"score_spread":0.1514826804293151,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162078292","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99765307,0.00027107936,0.000021674341,0.00023767365,0.00027405997,0.0003535655,0.00046557208,0.000022653318,0.00070067105],"genre_scores_gemma":[0.99482006,0.0005621554,0.0000074031427,0.0010384647,0.000028638071,0.000014908185,0.0021667208,0.000015602172,0.0013460732],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990978,0.00006034062,0.00024416577,0.00031548148,0.000012374042,0.00026978593],"domain_scores_gemma":[0.9995575,0.000010624796,0.00014950993,0.00026176265,0.000003447216,0.000017145512],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005911771,0.00019494051,0.00022356024,0.00003393962,0.0001617512,0.000006406969,0.00021236719,0.00019135432,0.00047383146],"category_scores_gemma":[0.0000012993144,0.00014078076,0.000084570594,0.00007291765,0.0005017785,0.00003509955,0.0002268339,0.00012728288,0.00012171321],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000057109417,0.00010954776,0.010102603,0.000010056882,0.000082287865,9.104505e-7,0.000102679005,1.573015e-7,0.98708904,0.00014795618,0.00070188456,0.0015957459],"study_design_scores_gemma":[0.0012848425,0.000063666084,0.18731509,0.000013813471,0.0001135659,0.00013593883,0.00019283086,2.3097488e-7,0.48172486,0.000036277397,0.32882783,0.00029103892],"about_ca_topic_score_codex":0.000005852371,"about_ca_topic_score_gemma":0.0000037026732,"teacher_disagreement_score":0.5053642,"about_ca_system_score_codex":0.0000180237,"about_ca_system_score_gemma":0.000005542819,"threshold_uncertainty_score":0.57408726},"labels":[],"label_agreement":null},{"id":"W2162152385","doi":"10.1128/aem.00197-08","title":"The Genome of <i>Polaromonas</i> sp. Strain JS666: Insights into the Evolution of a Hydrocarbon- and Xenobiotic-Degrading Bacterium, and Features of Relevance to Biotechnology","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":148,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Joint Genome Institute; National Science Foundation","keywords":"Transposable element; Biology; Plasmid; Bioremediation; Genetics; Bacteria; Gene; Genome; Biochemistry","score_opus":0.0018241868677227554,"score_gpt":0.1496822920095855,"score_spread":0.14785810514186273,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162152385","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98937935,0.010142794,0.0001182316,0.000110159664,0.000039674433,0.00016455793,0.000027609776,0.000003164922,0.000014484254],"genre_scores_gemma":[0.9932132,0.0062405365,0.00042238372,0.000026808782,0.000033005253,0.000004477699,0.000032153064,0.000008129046,0.000019304838],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994218,0.000022868959,0.00017995351,0.0002329461,0.000020843061,0.000121600846],"domain_scores_gemma":[0.9996943,0.000011495298,0.000088296314,0.00017762155,0.000004427566,0.000023855613],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007594008,0.00011596985,0.00016988673,0.00003337399,0.00008872902,0.0000018380181,0.00008908177,0.00014459416,4.3536014e-7],"category_scores_gemma":[0.000011365844,0.0000767805,0.0000200535,0.000055323617,0.0007467284,0.0000020444825,0.00013374268,0.000077011544,1.8027141e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005143395,0.00001878307,0.00023370793,0.000017901733,0.000033592587,1.506614e-7,0.00027437438,0.000007764487,0.99688464,0.0002893367,0.000008795235,0.002179542],"study_design_scores_gemma":[0.00023557866,0.00020721348,0.012705217,0.0000063651582,0.00001663463,0.00010256896,0.0003773011,0.000002096662,0.9813147,0.000069188696,0.004872798,0.00009032689],"about_ca_topic_score_codex":0.000052377734,"about_ca_topic_score_gemma":0.000017741475,"teacher_disagreement_score":0.015569907,"about_ca_system_score_codex":0.000009972345,"about_ca_system_score_gemma":0.000007491183,"threshold_uncertainty_score":0.3131018},"labels":[],"label_agreement":null},{"id":"W2162221719","doi":"10.1128/aem.68.6.3055-3066.2002","title":"Extensive Profiling of a Complex Microbial Community by High-Throughput Sequencing","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":130,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Plant Biotechnology Institute","funders":"Ministry of Agriculture - Saskatchewan","keywords":"Profiling (computer programming); Computational biology; DNA sequencing; Throughput; Biology; Metagenomics; Computer science; Genetics; DNA; Gene","score_opus":0.014684452144079334,"score_gpt":0.18510234461658168,"score_spread":0.17041789247250233,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162221719","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976594,0.0012551623,0.00010288644,0.000033310323,0.000041047944,0.00016705108,0.00037083184,0.000002372592,0.00036795184],"genre_scores_gemma":[0.99685216,0.00064718304,0.0015305029,0.00040995696,0.00003872723,0.0000105750705,0.00044599298,0.00001550005,0.000049404967],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999287,0.000051870335,0.00019466203,0.00024170704,0.00001825526,0.00020651493],"domain_scores_gemma":[0.9996527,0.000015853744,0.000087370376,0.0002046555,0.0000047663707,0.0000346765],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000065769294,0.00016077966,0.00021293448,0.0000147257415,0.0001531935,0.000004008589,0.00011200028,0.000121841935,0.000029339648],"category_scores_gemma":[0.000003027923,0.00015789513,0.000038412676,0.000017577859,0.0004253298,5.015024e-7,0.00025926818,0.00010339411,0.0000066201046],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018061082,0.00006384762,0.0006761037,0.000011939673,0.00006580786,3.3414167e-7,0.00018620645,0.000015281725,0.99732214,0.00004996222,0.0010369692,0.000553328],"study_design_scores_gemma":[0.0007071067,0.00023818537,0.0013657244,0.0000029746498,0.000023112874,0.00004743438,0.00084153,0.000007765739,0.9899951,0.000079754514,0.006482585,0.00020870734],"about_ca_topic_score_codex":0.00004990255,"about_ca_topic_score_gemma":0.00000602103,"teacher_disagreement_score":0.0073270393,"about_ca_system_score_codex":0.000017470602,"about_ca_system_score_gemma":0.0000036198937,"threshold_uncertainty_score":0.6438777},"labels":[],"label_agreement":null},{"id":"W2162397387","doi":"10.1128/aem.01651-08","title":"Effect of Molecules Secreted by <i>Lactobacillus acidophilus</i> Strain La-5 on <i>Escherichia coli</i> O157:H7 Colonization","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":132,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Canadian Institute for Public Safety Research and Treatment","funders":"","keywords":"Lactobacillus acidophilus; Escherichia coli; Microbiology; Colonization; Strain (injury); Bacteria; Biology; Lactobacillus; Enterobacteriaceae; Lactobacillaceae; Probiotic; Genetics; Gene","score_opus":0.00307419301857386,"score_gpt":0.19305684602932194,"score_spread":0.18998265301074807,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162397387","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99706185,0.0006661602,0.00009647493,0.00004282177,0.000027963086,0.00037532,0.00043321087,0.000011373088,0.0012848186],"genre_scores_gemma":[0.99651676,0.0015044434,0.0001131887,0.00039954306,0.000038738126,0.00005822269,0.0012093995,0.00002712332,0.00013256294],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99887174,0.0001784111,0.0001884528,0.00040955772,0.000065068365,0.0002867653],"domain_scores_gemma":[0.9995704,0.00006959871,0.000087107524,0.00019472121,0.0000052054083,0.000072927105],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015031392,0.00024656838,0.00027797464,0.000026343028,0.00013038961,0.000004875365,0.00013127169,0.00023820545,0.0000146847015],"category_scores_gemma":[0.00002002573,0.00021848132,0.000054509877,0.000058490725,0.00071841216,0.000002594442,0.00018053516,0.00014401106,0.000008731749],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003884901,0.00009071229,0.0016231778,0.000025383879,0.00008889389,0.000003731349,0.000048701568,0.000019394816,0.9957272,0.000028607925,0.0013276445,0.00062807783],"study_design_scores_gemma":[0.0015816671,0.0017686802,0.0015779409,0.0000056885906,0.000021634865,0.000032171873,0.00004497488,0.000010543215,0.96919036,0.000005883168,0.025523856,0.00023661852],"about_ca_topic_score_codex":0.0000062520103,"about_ca_topic_score_gemma":0.0000018909124,"teacher_disagreement_score":0.026536845,"about_ca_system_score_codex":0.000022642771,"about_ca_system_score_gemma":0.000016647926,"threshold_uncertainty_score":0.890941},"labels":[],"label_agreement":null},{"id":"W2162629389","doi":"10.1128/aem.01678-12","title":"Intestinal Origin of Sourdough <i>Lactobacillus reuteri</i> Isolates as Revealed by Phylogenetic, Genetic, and Physiological Analysis","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Institute of Food and Agriculture","keywords":"Lactobacillus reuteri; Biology; Genome; Phylogenetic tree; Genetics; Sequence analysis; Rodent; Phylogenetics; Lactobacillus; Microbiology; Whole genome sequencing; Gene; Bacteria","score_opus":0.009522952645707138,"score_gpt":0.18711715926876923,"score_spread":0.1775942066230621,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162629389","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977974,0.001560237,0.000012525532,0.00008787607,0.000023719718,0.00014138225,0.00021310471,0.000012172038,0.00015153267],"genre_scores_gemma":[0.99798703,0.0008825043,0.0003486923,0.0003049791,0.000052935833,0.000009013933,0.00037285482,0.0000015733335,0.00004043257],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99903464,0.000044643522,0.00023184218,0.0003174301,0.00003052404,0.00034088804],"domain_scores_gemma":[0.99965346,0.00005703833,0.000106953914,0.00006129974,0.0000027168992,0.00011855527],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008277293,0.00019242795,0.00032174742,0.000014123618,0.000095629635,0.000010162579,0.00011443451,0.00015786252,0.00023682736],"category_scores_gemma":[0.0000027185233,0.00008762586,0.00006264178,0.00010558192,0.00037195283,0.000023032388,0.00019199068,0.000100635174,0.000014082999],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034195535,0.0001297097,0.065191895,0.0000036536067,0.000094256655,3.1175102e-7,0.000035291858,8.711235e-7,0.93022656,0.00005388466,0.00011087285,0.0041185063],"study_design_scores_gemma":[0.0007801015,0.0012994545,0.8182874,0.00000961203,0.00046574583,0.00013379725,0.0006114553,0.00003730968,0.15570617,0.0003947874,0.021521043,0.00075313344],"about_ca_topic_score_codex":0.000035339774,"about_ca_topic_score_gemma":0.0000049515756,"teacher_disagreement_score":0.7745204,"about_ca_system_score_codex":0.000012679991,"about_ca_system_score_gemma":0.0000011695178,"threshold_uncertainty_score":0.35732788},"labels":[],"label_agreement":null},{"id":"W2162712962","doi":"10.1128/aem.00935-15","title":"Diversity of the Sediment Microbial Community in the Aha Watershed (Southwest China) in Response to Acid Mine Drainage Pollution Gradients","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mine drainage and remediation techniques","field":"Environmental Science","cited_by":91,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Watershed; Microbial population biology; Biogeochemical cycle; Acid mine drainage; Environmental science; Pollution; Sediment; Environmental chemistry; Temperature gradient gel electrophoresis; Ecology; Biology; Bacteria; Chemistry","score_opus":0.008901495621698357,"score_gpt":0.19132829147438865,"score_spread":0.18242679585269028,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162712962","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980905,0.000013236709,0.000016087812,0.0010030922,0.000037865717,0.00046183623,0.00004706972,0.0000062757044,0.00032404964],"genre_scores_gemma":[0.9990328,0.0000046661526,0.00008627333,0.0007534561,0.0000067519263,0.00001573863,0.00004544149,0.0000048769534,0.000049989696],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989876,0.00037561156,0.00018344646,0.00018103604,0.0000682544,0.00020403718],"domain_scores_gemma":[0.9996139,0.000024860736,0.00006751557,0.0002489588,5.9766813e-7,0.000044158656],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009513363,0.00012213495,0.00014313572,0.000047823603,0.00021768209,0.0000039524493,0.00036205546,0.000083879386,0.000034617],"category_scores_gemma":[0.000011946019,0.000078855126,0.00002862001,0.00012743987,0.00040358517,0.00003604185,0.0013321803,0.00019606584,0.000020042962],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018226216,0.00019637757,0.03255643,0.0000024994015,0.0000029524915,0.0000018110914,0.0215983,0.000045084773,0.94495517,0.000014307385,0.00032863618,0.00011614817],"study_design_scores_gemma":[0.0016714118,0.00028184347,0.8127049,0.000010237441,0.000011418911,0.00002496871,0.0065290434,0.000005019426,0.17552848,0.00059727917,0.002420649,0.00021473572],"about_ca_topic_score_codex":0.0014148096,"about_ca_topic_score_gemma":0.00055538147,"teacher_disagreement_score":0.7801485,"about_ca_system_score_codex":0.00019529765,"about_ca_system_score_gemma":0.0000030398594,"threshold_uncertainty_score":0.32156187},"labels":[],"label_agreement":null},{"id":"W2162776383","doi":"10.1128/aem.00202-09","title":"Detection of Noroviruses in Ready-To-Eat Foods by Using Carbohydrate-Coated Magnetic Beads","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Health Canada","funders":"Health Canada; Ontario Ministry of Agriculture, Food and Rural Affairs","keywords":"Norovirus; Food science; Outbreak; Biology; Microbiology; Virology","score_opus":0.011391034246202818,"score_gpt":0.24342203785361638,"score_spread":0.23203100360741355,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162776383","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988343,0.00047696388,0.00007913033,0.00012465117,0.000021951559,0.00028599848,0.00005873232,0.000009388595,0.00010889047],"genre_scores_gemma":[0.99843866,0.00027833445,0.00024124132,0.00082927314,0.000018152976,0.000009199877,0.00015376574,0.0000094600155,0.000021889504],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990557,0.000051326508,0.00025886955,0.0002664272,0.000029262144,0.00033841393],"domain_scores_gemma":[0.99972886,0.000011478077,0.000038929786,0.00011168717,0.000002153501,0.00010689009],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009231021,0.00013056172,0.00033146577,0.00010853796,0.000028302073,0.0000023212792,0.000045935256,0.00012679757,0.000032206],"category_scores_gemma":[0.000008571392,0.0001202883,0.00002544981,0.000069304006,0.00017861459,0.00001679186,0.00004431841,0.00013814618,0.0000109140765],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003368286,0.00011040085,0.015429475,0.000008718291,0.000008788468,0.000006444174,0.000028380467,0.0000067167625,0.97375274,0.0000034554578,0.000053926644,0.010254131],"study_design_scores_gemma":[0.003612266,0.0060274666,0.13783665,0.00005251676,0.000048587943,0.00033270876,0.00027946781,0.00015989732,0.84923583,0.000050563976,0.0020820426,0.00028197258],"about_ca_topic_score_codex":0.00020526962,"about_ca_topic_score_gemma":0.00004069871,"teacher_disagreement_score":0.12451688,"about_ca_system_score_codex":0.00010075075,"about_ca_system_score_gemma":0.000005725397,"threshold_uncertainty_score":0.49052143},"labels":[],"label_agreement":null},{"id":"W2162791356","doi":"10.1128/aem.70.5.2639-2646.2004","title":"In Vivo Synthesis of Mammalian-Like, Hybrid-Type N-Glycans in<i>Pichia pastoris</i>","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":184,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Vlaamse regering; Universiteit Gent; Fonds Wetenschappelijk Onderzoek; McGill University","keywords":"Pichia pastoris; Glycosylation; Golgi apparatus; Glycoprotein; Glycan; Endoplasmic reticulum; Mannose; Biochemistry; N-linked glycosylation; Secretory pathway; Chemistry; Cell biology; Recombinant DNA; Biology; Gene","score_opus":0.003959768168829875,"score_gpt":0.19660936946033775,"score_spread":0.19264960129150788,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162791356","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99876404,0.00026155214,0.00003357522,0.00009322037,0.000054223638,0.00019065072,0.000058804675,0.000002252755,0.0005417025],"genre_scores_gemma":[0.9988047,0.00043295234,0.0002299071,0.00021073953,0.00002752936,0.000027401951,0.00007644291,0.000012840504,0.00017752654],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999183,0.000027622495,0.00021781697,0.00030101248,0.000034753528,0.00023582476],"domain_scores_gemma":[0.9997404,0.000009034686,0.000039211493,0.00016464935,0.000002467303,0.000044209693],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009957745,0.00012559269,0.00016886789,0.000071827046,0.000023866787,0.000003182751,0.000102832644,0.00012661214,0.00009079728],"category_scores_gemma":[0.0000072312623,0.00012480818,0.0000270884,0.00005928729,0.00018265525,0.0000029196058,0.00010884258,0.00009237162,0.00001570935],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012951405,0.00011411805,0.004047762,0.000011752937,0.000009935142,0.0000071894347,0.000033022578,0.00014014269,0.9947899,0.00006647904,0.00014130432,0.0005089039],"study_design_scores_gemma":[0.0009976918,0.00013855536,0.0035110556,0.0000067841183,0.0000038357366,0.000037052556,0.00011077162,0.0000018069704,0.96837723,0.00008654275,0.026584998,0.000143663],"about_ca_topic_score_codex":0.00013184318,"about_ca_topic_score_gemma":0.0001507303,"teacher_disagreement_score":0.026443694,"about_ca_system_score_codex":0.000035647776,"about_ca_system_score_gemma":0.00002149001,"threshold_uncertainty_score":0.50895303},"labels":[],"label_agreement":null},{"id":"W2162941392","doi":"10.1128/aem.00460-13","title":"Insights into the Assembly of the Alginate Biosynthesis Machinery in Pseudomonas aeruginosa","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Toronto; Virginia Commonwealth University","keywords":"Periplasmic space; Multiprotein complex; Immunoprecipitation; Bacterial outer membrane; Biology; Operon; Inner membrane; Cell biology; Secretion; Biochemistry; Gene; Membrane; Escherichia coli","score_opus":0.002579772237040711,"score_gpt":0.161658724462458,"score_spread":0.1590789522254173,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162941392","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99855554,0.00047867055,0.000004076454,0.00037697257,0.00007506079,0.0002088624,0.0000074702352,0.0000022358222,0.00029111883],"genre_scores_gemma":[0.99905527,0.00021155798,0.00010097084,0.00047817687,0.00003814609,0.000013023141,0.000047759517,0.000010302243,0.000044784763],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993663,0.0000564867,0.00016433674,0.00023193816,0.00002140041,0.0001595766],"domain_scores_gemma":[0.99966013,0.00001828976,0.00006915905,0.00022769075,0.0000019553347,0.000022754231],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005028603,0.00013307885,0.0001319925,0.000018244124,0.00008054572,0.000008499421,0.0001457787,0.00014006223,0.000016684657],"category_scores_gemma":[0.0000036332792,0.00007508055,0.000044419416,0.00003388929,0.00036317584,0.0000026766345,0.00024179851,0.000082772065,0.000011002003],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013282176,0.000029432522,0.0016545184,0.0000038363323,0.000017008224,2.0978834e-7,0.0001077185,0.0000025364477,0.9944711,0.00009593424,0.000095708136,0.0035087175],"study_design_scores_gemma":[0.0002388497,0.000036981284,0.03671676,0.0000048473466,0.000008118667,0.000012109709,0.00019913622,0.0000058863616,0.95649105,0.00006578003,0.006111688,0.00010880916],"about_ca_topic_score_codex":0.00016322298,"about_ca_topic_score_gemma":0.000040350464,"teacher_disagreement_score":0.03798006,"about_ca_system_score_codex":0.000009293191,"about_ca_system_score_gemma":0.000006539605,"threshold_uncertainty_score":0.3061696},"labels":[],"label_agreement":null},{"id":"W2163089618","doi":"10.1128/aem.00507-09","title":"Contributions of O Island 48 to Adherence of Enterohemorrhagic <i>Escherichia coli</i> O157:H7 to Epithelial Cells In Vitro and in Ligated Pig Ileal Loops","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Agriculture and Agri-Food Canada","funders":"China Scholarship Council","keywords":"Complementation; Escherichia coli; Microbiology; Biology; In vitro; Mutant; Gene; Pathogen; Enterobacteriaceae; Colonization; In vivo; Gene cluster; Molecular biology; Bacterial adhesin; Genetics","score_opus":0.003481077245155833,"score_gpt":0.21067935841200924,"score_spread":0.2071982811668534,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163089618","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984388,0.00031993576,0.00007230098,0.000118701464,0.00002216665,0.0004152372,0.0005077991,0.0000019670813,0.00010309459],"genre_scores_gemma":[0.9986413,0.00029462297,0.0004361089,0.0004303108,0.00001646772,0.000030374682,0.00010735366,0.0000066260177,0.00003684783],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99908245,0.00004613294,0.00025009539,0.000313585,0.00003273792,0.00027498434],"domain_scores_gemma":[0.99972385,0.000018547458,0.00005149542,0.00012371485,0.000006358156,0.00007600363],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001128732,0.00014545393,0.00028650538,0.000055820612,0.000027137394,0.0000033156105,0.0001010965,0.000120811346,0.0000069056828],"category_scores_gemma":[0.000011967539,0.00014022189,0.00002289746,0.000089323396,0.00019113327,0.0000021623498,0.00018604838,0.00009931629,0.0000040242153],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00056717894,0.0001623679,0.0016751204,0.000011910095,0.000015103266,0.0000018813763,0.00013729154,0.00001610776,0.9967182,0.000008207261,0.00010489174,0.000581684],"study_design_scores_gemma":[0.0011572181,0.0005090907,0.013647064,0.000009336379,0.0000060390203,0.0000038885405,0.00015620989,0.000006053817,0.9834119,0.000023555214,0.0009411457,0.0001284959],"about_ca_topic_score_codex":0.000041763487,"about_ca_topic_score_gemma":0.00008339313,"teacher_disagreement_score":0.013306352,"about_ca_system_score_codex":0.000021356262,"about_ca_system_score_gemma":0.00001492518,"threshold_uncertainty_score":0.5718083},"labels":[],"label_agreement":null},{"id":"W2163123607","doi":"10.1128/aem.71.6.2902-2909.2005","title":"Identification of a Gene Cluster for the Formation of Extracellular Polysaccharide Precursors in the Chemolithoautotroph <i>Acidithiobacillus ferrooxidans</i>","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Metal Extraction and Bioleaching","field":"Engineering","cited_by":113,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Deutscher Akademischer Austauschdienst; U.S. Department of Energy","keywords":"Operon; Complementation; Biochemistry; Gene cluster; Gene; Galactose; Biology; Biofilm; Acidithiobacillus; Chemistry; Escherichia coli; Mutant; Bacteria; Genetics; Bioleaching; Acidithiobacillus ferrooxidans","score_opus":0.006056392952995752,"score_gpt":0.18105220447455414,"score_spread":0.17499581152155838,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163123607","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9829679,0.0009531628,0.015429568,0.00013376058,0.00004643063,0.00037200752,0.000048888844,0.000007672931,0.000040566723],"genre_scores_gemma":[0.9992499,0.0001932402,0.0003531734,0.00006822724,0.000024999836,0.00004232159,0.000043233813,0.0000067599503,0.000018167892],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99948925,0.000018754772,0.00027890145,0.00008506377,0.000027534754,0.000100515026],"domain_scores_gemma":[0.9997622,0.000052243944,0.0000659804,0.00010903449,0.0000013398611,0.000009206183],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025604825,0.000079373945,0.00010313549,0.000027521688,0.000035715166,0.0000048608968,0.0000921142,0.000063357715,0.000007833131],"category_scores_gemma":[0.0000021224075,0.000050647952,0.000034141547,0.000029006082,0.00007049015,0.000046397156,0.000011158227,0.00007859702,0.000003029557],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016848835,0.000024636636,0.000012895188,0.000023778728,0.000009305866,3.2605964e-8,0.0006409996,0.0033459438,0.9899459,0.00013951614,0.00002218825,0.0058179805],"study_design_scores_gemma":[0.00041438246,0.000018760116,0.0008795758,0.000003693536,0.000024509154,0.000036319474,0.00079583644,0.013445143,0.98076224,0.000036357545,0.0035046113,0.00007859137],"about_ca_topic_score_codex":0.0000046326395,"about_ca_topic_score_gemma":0.000008443611,"teacher_disagreement_score":0.016281933,"about_ca_system_score_codex":0.000022681837,"about_ca_system_score_gemma":0.0000013417209,"threshold_uncertainty_score":0.20653635},"labels":[],"label_agreement":null},{"id":"W2163125517","doi":"10.1128/aem.71.11.6986-6997.2005","title":"Comparison of Microbial Community Compositions of Two Subglacial Environments Reveals a Possible Role for Microbes in Chemical Weathering Processes","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":279,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta","funders":"Jet Propulsion Laboratory","keywords":"Glacier; Betaproteobacteria; Microbial population biology; Population; Geology; Biology; 16S ribosomal RNA; Paleontology; Bacteria","score_opus":0.012424026604859618,"score_gpt":0.26783289769433516,"score_spread":0.2554088710894755,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163125517","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986549,0.00017058573,0.00009885315,0.00004350628,0.000012149001,0.00044476963,0.00021050459,0.000005727544,0.0003589808],"genre_scores_gemma":[0.9967786,0.000048544603,0.0027666094,0.00006658546,0.000018892672,0.000051185623,0.00022111498,0.000015201502,0.00003325563],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987943,0.000078272766,0.0004221263,0.00025804425,0.0000484328,0.0003988273],"domain_scores_gemma":[0.9994808,0.00013357362,0.00014250223,0.00016972351,0.0000010737941,0.00007232619],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022440402,0.00017164795,0.00040404126,0.000052592557,0.00012631092,0.0000048768434,0.00025418267,0.00012920612,0.0002182507],"category_scores_gemma":[0.000008894662,0.0001757038,0.00004796674,0.000070245835,0.00088494,0.00006656302,0.00037586788,0.0002221602,0.000030134064],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000122012265,0.00082302326,0.117235675,0.000032674372,0.000016133492,1.7021584e-7,0.0009488033,0.00017239696,0.87906677,0.000019550844,0.000055091336,0.0015076764],"study_design_scores_gemma":[0.0018256577,0.0002150277,0.027427662,0.0000149105545,0.000015634605,0.000019099578,0.00063936255,0.000056424276,0.9674516,0.00030716814,0.00182953,0.0001979236],"about_ca_topic_score_codex":0.00014904626,"about_ca_topic_score_gemma":0.00041443246,"teacher_disagreement_score":0.08980802,"about_ca_system_score_codex":0.00014160134,"about_ca_system_score_gemma":0.0000080541195,"threshold_uncertainty_score":0.71649927},"labels":[],"label_agreement":null},{"id":"W2163127726","doi":"10.1128/aem.01397-06","title":"An Integrated Approach to Functional Genomics: Construction of a Novel Reporter Gene Fusion Library for<i>Sinorhizobium meliloti</i>","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Ontario Genomics Institute; Genome Canada","keywords":"Sinorhizobium meliloti; Biology; Reporter gene; Gene; Fusion gene; Plasmid; Genetics; Functional genomics; Genome; Genomic library; Operon; Molecular biology; Escherichia coli; Gene expression; Genomics; Peptide sequence","score_opus":0.0074418392166105685,"score_gpt":0.15350447795411967,"score_spread":0.1460626387375091,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163127726","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982805,0.000039394847,0.0001750684,0.000075344826,0.000066867455,0.00034928895,0.00072772853,0.00003525675,0.00025053925],"genre_scores_gemma":[0.97814316,0.0000043824643,0.016274659,0.00027993595,0.00012210455,0.00004001771,0.005093451,0.0000031976103,0.00003909889],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991181,0.000016046213,0.0002573494,0.00039061817,0.000031306394,0.00018661095],"domain_scores_gemma":[0.999748,0.000028072143,0.000107588436,0.00005940119,0.000003979997,0.000052981002],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000062707084,0.0001463431,0.00018144239,0.000017683758,0.000102713544,0.000014613806,0.00008972255,0.00014063946,0.0000661765],"category_scores_gemma":[8.024792e-7,0.0000723279,0.00005017789,0.000067037254,0.00014842863,0.00006263206,0.00006741308,0.00005069704,0.000004034566],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010550354,0.00026079678,0.0025533757,0.0000030506567,0.000013753047,1.3261807e-7,0.00001646106,0.0000044257213,0.9940846,0.00031513107,0.0003477067,0.0022950568],"study_design_scores_gemma":[0.0005170407,0.00026652226,0.03612606,0.0000025195325,0.00002912614,0.00012643849,0.00030536592,0.000016539221,0.95372033,0.00023290272,0.0084118135,0.00024534232],"about_ca_topic_score_codex":0.000053815063,"about_ca_topic_score_gemma":0.0000066883786,"teacher_disagreement_score":0.040364277,"about_ca_system_score_codex":0.000025405636,"about_ca_system_score_gemma":0.000004561935,"threshold_uncertainty_score":0.2949446},"labels":[],"label_agreement":null},{"id":"W2163292114","doi":"10.1128/aem.02037-08","title":"Characterization of a <i>Dehalobacter</i> Coculture That Dechlorinates 1,2-Dichloroethane to Ethene and Identification of the Putative Reductive Dehalogenase Gene","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Dehalogenase; Dehalococcoides; Reductive dechlorination; Chemistry; Biology; Biochemistry; Gene; Organic chemistry; Biodegradation","score_opus":0.004532803342170158,"score_gpt":0.17800423892343942,"score_spread":0.17347143558126926,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163292114","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998792,0.000026924348,0.000042551477,0.00032662,0.000045290097,0.00037953092,0.0003304351,0.0000071889326,0.000049438917],"genre_scores_gemma":[0.999112,0.00012614687,0.00014262692,0.0003761296,0.000009193892,0.0000050433064,0.00018751211,0.0000051897828,0.000036136116],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992639,0.00003847498,0.00022804363,0.00027735403,0.00005529524,0.0001369293],"domain_scores_gemma":[0.99959874,0.000013197796,0.0002069543,0.0001269277,0.0000027652084,0.00005141595],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000104773426,0.00013169831,0.00016621973,0.000020459349,0.00006245664,0.000005793075,0.000109930275,0.000097037875,0.000044741922],"category_scores_gemma":[0.000005075935,0.000094386975,0.00002570637,0.00008988146,0.00043768558,0.000051218027,0.00009110246,0.00006209835,0.000012063439],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051222956,0.00006870482,0.004359154,0.0000034990396,0.000009172042,1.8937935e-7,0.0010623343,0.000005307044,0.99242127,0.000031189087,0.00001458774,0.001973384],"study_design_scores_gemma":[0.0001981252,0.000053594198,0.26100433,0.0000031479278,0.000013312994,0.000012150777,0.00015249262,0.0000017720839,0.73824924,0.00006491449,0.00017155801,0.00007538772],"about_ca_topic_score_codex":0.000009406871,"about_ca_topic_score_gemma":0.0000047248172,"teacher_disagreement_score":0.25664517,"about_ca_system_score_codex":0.00004381152,"about_ca_system_score_gemma":0.0000026848609,"threshold_uncertainty_score":0.3848989},"labels":[],"label_agreement":null},{"id":"W2163293919","doi":"10.1128/aem.03341-12","title":"Examination of Food Chain-Derived Listeria monocytogenes Strains of Different Serotypes Reveals Considerable Diversity in <i>inlA</i> Genotypes, Mutability, and Adaptation to Cold Temperatures","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"British Columbia Centre for Disease Control; Canada's Michael Smith Genome Sciences Centre; Public Health Agency of Canada","keywords":"Serotype; Listeria monocytogenes; Biology; Virulence; Genotype; Microbiology; Strain (injury); Listeria; Agar; Virology; Bacteria; Genetics; Gene","score_opus":0.028733213374682664,"score_gpt":0.22087005378166927,"score_spread":0.19213684040698661,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163293919","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99876356,0.0003637919,0.000044917968,0.000024979423,0.000033466116,0.000559425,0.00016570349,0.0000028011773,0.00004136605],"genre_scores_gemma":[0.9988704,0.00018682843,0.0005554759,0.00012468627,0.0000133982185,0.00003359622,0.00019208949,0.000009587551,0.000013953116],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991926,0.000070315764,0.00025382495,0.00031143025,0.000029914872,0.00014190901],"domain_scores_gemma":[0.9996708,0.000017699553,0.00009938681,0.00015967507,0.000008396652,0.000044063203],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000094124836,0.00014553643,0.00023331848,0.000037769045,0.000051984553,0.000005860648,0.00007947477,0.00013817208,0.00001393378],"category_scores_gemma":[0.000006227347,0.00013913777,0.000022005332,0.00002401981,0.00021019654,0.000005337249,0.00049160694,0.00003885939,7.538527e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000061402054,0.00007016731,0.0155689595,0.000043291988,0.000034258348,1.8004287e-7,0.00047292514,0.000020761816,0.98294383,0.000087022214,0.000006936791,0.00069027854],"study_design_scores_gemma":[0.000565623,0.00040088213,0.18570526,0.000006968787,0.000012181194,0.000006432694,0.0005600892,0.000004748131,0.81245166,0.00011654565,0.000043915858,0.000125684],"about_ca_topic_score_codex":0.000051303792,"about_ca_topic_score_gemma":0.00009474479,"teacher_disagreement_score":0.17049216,"about_ca_system_score_codex":0.000021513615,"about_ca_system_score_gemma":0.000006533954,"threshold_uncertainty_score":0.5673874},"labels":[],"label_agreement":null},{"id":"W2163395089","doi":"10.1128/aem.01458-12","title":"Characterization of the Twin-Arginine Transport Secretome in Sinorhizobium meliloti and Evidence for Host-Dependent Phenotypes","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Sinorhizobium meliloti; Phenotype; Host (biology); Biology; Arginine; Microbiology; Computational biology; Bacteria; Genetics; Gene; Symbiosis; Amino acid","score_opus":0.012710957537418691,"score_gpt":0.18930453771949438,"score_spread":0.1765935801820757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163395089","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99883115,0.00039209,9.0702645e-7,0.00022186674,0.000055687684,0.00033949583,0.00014108188,0.000005960038,0.000011748565],"genre_scores_gemma":[0.9995057,0.00006939357,0.000027391765,0.00017834574,0.00005300389,0.000026971553,0.00011610654,0.0000013559692,0.000021706055],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99943364,0.000023718063,0.00015147991,0.00017263733,0.00002788977,0.00019063329],"domain_scores_gemma":[0.9997787,0.00007682346,0.000072495626,0.000037645077,0.00000164205,0.000032715645],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012659462,0.000099213175,0.00013936164,0.000007043674,0.00005697805,0.0000033017566,0.000084410785,0.00008417005,0.000046917154],"category_scores_gemma":[0.000003116535,0.00004051849,0.000026900345,0.000041816827,0.00015691668,0.00006126808,0.000053861877,0.0000518809,0.0000025507281],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003093055,0.000041269,0.13332228,0.000008234343,0.000006477406,4.012569e-8,0.00017867633,1.7602533e-8,0.8655629,0.00005909606,0.0000010183816,0.0007890674],"study_design_scores_gemma":[0.0001338778,0.000043263528,0.5878207,0.000008258298,0.0000134341235,0.000004725586,0.0000915851,2.1805589e-7,0.4116116,0.000014486492,0.00019263792,0.00006523429],"about_ca_topic_score_codex":0.000030337773,"about_ca_topic_score_gemma":0.000024273146,"teacher_disagreement_score":0.4544984,"about_ca_system_score_codex":0.000016760867,"about_ca_system_score_gemma":0.0000015642325,"threshold_uncertainty_score":0.16522962},"labels":[],"label_agreement":null},{"id":"W2163530453","doi":"10.1128/aem.01583-13","title":"Microbial Contents of Vacuum Cleaner Bag Dust and Emitted Bioaerosols and Their Implications for Human Exposure Indoors","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Indoor Air Quality and Microbial Exposure","field":"Environmental Science","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec","funders":"National Health and Medical Research Council; Queensland University of Technology","keywords":"Indoor bioaerosol; Bioaerosol; Bacteria; Penicillium; Temperature gradient gel electrophoresis; Microbiology; Food science; Biology; Archaea; Pathogenic bacteria; Environmental science; Chemistry; Aerosol; Ecology; 16S ribosomal RNA","score_opus":0.010325672549138628,"score_gpt":0.19898953182411397,"score_spread":0.18866385927497534,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163530453","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978863,0.00010903093,0.00009126914,0.00033188472,0.000035250476,0.00090149615,0.00045475256,0.000016043547,0.00017394952],"genre_scores_gemma":[0.9982573,0.00007904054,0.00038625635,0.00066476926,0.000024266983,0.000090076435,0.00030320612,0.0000217831,0.00017334241],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987875,0.000039897604,0.0003397436,0.00047931453,0.00001881831,0.0003346811],"domain_scores_gemma":[0.9995026,0.00006307064,0.00013612038,0.00019402949,0.0000028609675,0.00010133094],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011377813,0.00024953714,0.00031921343,0.000029916562,0.00027189596,0.000021267611,0.00013269515,0.00023856992,0.00024385653],"category_scores_gemma":[0.000002697881,0.00021019719,0.000047122543,0.000040794588,0.0011556321,0.000082520455,0.0002947398,0.00012698284,0.000024858007],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018899314,0.00009171739,0.022101931,0.0000191996,0.000030744563,7.405352e-8,0.0005373834,0.0000011702925,0.9725515,0.0002962431,0.00083247863,0.0035186408],"study_design_scores_gemma":[0.005600597,0.0008082357,0.39704627,0.000027457141,0.00008914658,0.00022640076,0.00243441,0.000008578154,0.57709235,0.0028944074,0.012774806,0.0009973396],"about_ca_topic_score_codex":0.00017809673,"about_ca_topic_score_gemma":0.000034379198,"teacher_disagreement_score":0.39545918,"about_ca_system_score_codex":0.00003598859,"about_ca_system_score_gemma":0.0000024276,"threshold_uncertainty_score":0.8571593},"labels":[],"label_agreement":null},{"id":"W2163544718","doi":"10.1128/aem.02849-06","title":"Role of Lipid Composition and Lipid Peroxidation in the Sensitivity of Fungal Plant Pathogens to Aluminum Chloride and Sodium Metabisulfite","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Aluminum toxicity and tolerance in plants and animals","field":"Agricultural and Biological Sciences","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Lipid peroxidation; Sodium metabisulfite; Sodium; Chemistry; Biochemistry; Composition (language); Microbiology; Biology; Food science; Oxidative stress; Organic chemistry","score_opus":0.006347905503618867,"score_gpt":0.17178213694092576,"score_spread":0.1654342314373069,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163544718","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99921554,0.0001078401,0.0000069890752,0.00011375945,0.00001419604,0.00014915878,0.00032551514,0.0000025560412,0.00006441671],"genre_scores_gemma":[0.9993628,0.000170981,0.00004273207,0.00018306718,0.000057266065,0.0000027209915,0.00017747699,6.003577e-7,0.0000023180216],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994514,0.000041609517,0.0001645749,0.00017234913,0.000032398828,0.00013765533],"domain_scores_gemma":[0.99971724,0.00016413185,0.00006179185,0.000024244246,0.0000017088676,0.00003087102],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004008788,0.000088578054,0.00016921383,0.000012018759,0.000069947804,0.000006290484,0.000035733585,0.0000718633,0.000010236018],"category_scores_gemma":[0.0000017213614,0.00003872878,0.000016683049,0.000036711688,0.00016061442,0.000026796619,0.00005026985,0.000060127204,9.285793e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012238395,0.000063779036,0.015062216,0.0000046260875,0.000005347959,0.0000013479487,0.00037258296,8.432742e-7,0.97360295,0.00013178619,0.0000026028515,0.010629523],"study_design_scores_gemma":[0.00016303349,0.00016432436,0.58156496,0.000009303559,0.000010905715,0.00009653171,0.0021138722,0.000011998357,0.41464627,0.00003823573,0.0010844647,0.00009611149],"about_ca_topic_score_codex":0.00006660609,"about_ca_topic_score_gemma":0.00018100262,"teacher_disagreement_score":0.56650275,"about_ca_system_score_codex":0.0000045319284,"about_ca_system_score_gemma":7.198548e-7,"threshold_uncertainty_score":0.15793139},"labels":[],"label_agreement":null},{"id":"W2163756337","doi":"10.1128/aem.66.11.4870-4876.2000","title":"Evidence of Substantial Carbon Isotope Fractionation among Substrate, Inorganic Carbon, and Biomass during Aerobic Mineralization of 1,2-Dichloroethane by <i>Xanthobacter autotrophicus</i>","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"U.S. Environmental Protection Agency","keywords":"Fractionation; Chemistry; Isotopes of carbon; Isotope fractionation; Mineralization (soil science); Carbon fibers; Isotope; Environmental chemistry; Chromatography; Total organic carbon; Organic chemistry; Nitrogen; Materials science","score_opus":0.004821214483247423,"score_gpt":0.1748120810477479,"score_spread":0.16999086656450046,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163756337","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989255,0.0003839907,0.0000020266941,0.00003151485,0.00003822435,0.0002366984,0.00003273445,0.00001223245,0.00033708182],"genre_scores_gemma":[0.99831367,0.0012745614,0.00003174591,0.000046287423,0.000012934936,0.000009943509,0.00020425027,0.000014096644,0.0000925202],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989172,0.0001268985,0.00034640866,0.00033356794,0.000044765053,0.00023111013],"domain_scores_gemma":[0.9995159,0.00006628717,0.00018187337,0.0001833184,0.000002374791,0.000050240335],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001165518,0.00019215362,0.00029101636,0.000038642906,0.00009897625,0.0000041041585,0.00013326568,0.00024374653,0.0015317581],"category_scores_gemma":[0.0000030301364,0.00019236271,0.000026236974,0.00010347087,0.0010360832,0.000091560905,0.00012919676,0.00016390005,0.000006773271],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014585335,0.000086843225,0.08945152,0.00002310105,0.000020830095,7.1683206e-7,0.00023047719,0.00004750663,0.9097854,0.000005641138,0.000023804128,0.00017834302],"study_design_scores_gemma":[0.00070768077,0.00017780426,0.36874688,0.000020234627,0.0000398389,0.000040750485,0.000069093105,0.000047052483,0.6297347,0.00006281449,0.00013103258,0.00022213369],"about_ca_topic_score_codex":0.0010196072,"about_ca_topic_score_gemma":0.00038836713,"teacher_disagreement_score":0.28005067,"about_ca_system_score_codex":0.000054844742,"about_ca_system_score_gemma":0.000004696691,"threshold_uncertainty_score":0.999381},"labels":[],"label_agreement":null},{"id":"W2163801371","doi":"10.1128/aem.69.3.1827-1831.2003","title":"The Competitiveness of <i>Pseudomonas chlororaphis</i> Carrying pJP4 Is Reduced in the <i>Arabidopsis thaliana</i> Rhizosphere","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Pseudomonas chlororaphis; Rhizosphere; Biology; Plasmid; Arabidopsis thaliana; Population; Pseudomonas fluorescens; Phenazine; Microbiology; Rhizobacteria; Phyllosphere; Pseudomonas; Bacteria; Agrobacterium tumefaciens; Botany; Biochemistry; Genetics; Mutant; Transformation (genetics); Gene","score_opus":0.004538131350159421,"score_gpt":0.18020778761677633,"score_spread":0.1756696562666169,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163801371","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99724823,0.0010721593,0.0000027818778,0.00016997736,0.00008803231,0.0001831697,0.00006114391,0.0000020734158,0.0011724554],"genre_scores_gemma":[0.9981187,0.0008978775,0.00007909072,0.00070410897,0.00003351107,0.000010905088,0.00008822039,0.000012551928,0.000055044504],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99915403,0.00009396458,0.00019990886,0.0002785503,0.000031562224,0.00024196837],"domain_scores_gemma":[0.9996172,0.000032821485,0.00008206386,0.00024088073,0.0000023739785,0.000024655705],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002060756,0.0001534425,0.00015967843,0.00001014657,0.00015692954,0.000013093428,0.00013966956,0.00013796412,0.0000195592],"category_scores_gemma":[0.0000040648474,0.000099581994,0.000052493553,0.00004757827,0.0004207514,0.0000022150216,0.00006309509,0.000092603186,0.0000031916732],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000050698272,0.00003465636,0.0027217618,0.0000046697737,0.000023579118,0.0000011154192,0.00013153409,0.000001217411,0.99572337,0.00034136194,0.000096014446,0.00087001425],"study_design_scores_gemma":[0.00048825803,0.000078571524,0.0046728277,0.000006646235,0.00001334877,0.000075618664,0.0014123251,2.8698506e-7,0.93848526,0.000032783788,0.054587163,0.00014689808],"about_ca_topic_score_codex":0.000024685316,"about_ca_topic_score_gemma":0.000024747758,"teacher_disagreement_score":0.057238102,"about_ca_system_score_codex":0.000008399535,"about_ca_system_score_gemma":0.000011140194,"threshold_uncertainty_score":0.40608358},"labels":[],"label_agreement":null},{"id":"W2164315403","doi":"10.1128/aem.00489-08","title":"Effect of Subtherapeutic Administration of Antibiotics on the Prevalence of Antibiotic-Resistant <i>Escherichia coli</i> Bacteria in Feedlot Cattle","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":143,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Bow Valley College; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; Antibiotics; Feedlot; Antibiotic resistance; Oxytetracycline; Escherichia coli; Microbiology; Ampicillin; Ciprofloxacin; Veterinary medicine; Chlortetracycline; Tylosin; Animal science; Medicine","score_opus":0.005470115935563809,"score_gpt":0.20064715225753837,"score_spread":0.19517703632197456,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164315403","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990762,0.00022913844,0.000008995244,0.000018232395,0.000040054234,0.00031218343,0.00015946562,0.0000017566342,0.0001539763],"genre_scores_gemma":[0.9988726,0.00082089886,0.000104438666,0.00004350532,0.000012864084,6.786045e-7,0.00008275333,0.0000138812475,0.000048423073],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99909437,0.00011116982,0.00033396357,0.00025792286,0.000043574528,0.00015902791],"domain_scores_gemma":[0.99941057,0.00007142901,0.00021737735,0.0002745151,0.0000044775347,0.000021658443],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001847036,0.00016327028,0.00027840727,0.000026249098,0.00003299948,0.0000017214899,0.00015386485,0.00015220142,0.000018186814],"category_scores_gemma":[0.000009976099,0.000121586134,0.00004822322,0.000047481328,0.0008154705,0.0000022662575,0.00006212523,0.00006921324,0.0000015574656],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009402625,0.00014354438,0.04758099,0.00020900708,0.000031998738,7.1066404e-7,0.000045798202,0.000005052179,0.9508867,0.000070363574,0.000016666865,0.00006888203],"study_design_scores_gemma":[0.0004129482,0.0011158462,0.2357101,0.000026943757,0.000019738656,0.000010505182,0.00003233244,8.434305e-7,0.7625081,0.0000027357103,0.00007905107,0.00008084323],"about_ca_topic_score_codex":0.0000072803473,"about_ca_topic_score_gemma":0.000004378732,"teacher_disagreement_score":0.1883786,"about_ca_system_score_codex":0.00001100618,"about_ca_system_score_gemma":0.000021634818,"threshold_uncertainty_score":0.49581385},"labels":[],"label_agreement":null},{"id":"W2164500974","doi":"10.1128/aem.67.10.4874-4879.2001","title":"Physical and Metabolic Interactions of <i>Pseudomonas</i> sp. Strain JA5-B45 and <i>Rhodococcus</i> sp. Strain F9-D79 during Growth on Crude Oil and Effect of a Chemical Surfactant on Them","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":127,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Pulmonary surfactant; Chemistry; Rhodococcus; Strain (injury); Microbiology; Biodegradation; Nonylphenol; Chromatography; Biochemistry; Organic chemistry; Biology; Environmental chemistry","score_opus":0.005192767381446522,"score_gpt":0.19357483525441146,"score_spread":0.18838206787296494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164500974","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99839973,0.000052309013,8.026056e-7,0.00009477562,0.000028645189,0.0001720423,0.00050412904,0.000012020397,0.00073553843],"genre_scores_gemma":[0.99881583,0.0007961464,0.00007230989,0.0001598352,0.00002618916,0.0000072312505,0.00007527795,0.000016945818,0.000030249554],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99878234,0.00007297957,0.0002743573,0.00050196005,0.00008210701,0.0002862693],"domain_scores_gemma":[0.9994332,0.000159769,0.00014138473,0.00013861485,0.0000011685216,0.00012583507],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014560646,0.0002964194,0.00044184565,0.00003534985,0.00007528448,0.000011493262,0.00009019143,0.00012089271,0.00016653891],"category_scores_gemma":[0.0000076674505,0.00023300573,0.000049468093,0.00006483076,0.0008647688,0.00005745211,0.00020067005,0.00019882344,0.000019637515],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029052878,0.00019356418,0.019114595,0.00002913347,0.00003267468,0.00000334842,0.0002682434,0.000001847067,0.9750535,0.00006165555,0.000027307029,0.0049236184],"study_design_scores_gemma":[0.0016125634,0.0002515067,0.06315714,0.000021293008,0.000047004836,0.00011071933,0.00010967137,0.00000882843,0.9339458,0.000051678115,0.0004418667,0.00024195171],"about_ca_topic_score_codex":0.00003870517,"about_ca_topic_score_gemma":0.000009588412,"teacher_disagreement_score":0.044042546,"about_ca_system_score_codex":0.000035307417,"about_ca_system_score_gemma":0.0000024964747,"threshold_uncertainty_score":0.9501698},"labels":[],"label_agreement":null},{"id":"W2164531970","doi":"10.1128/aem.01033-09","title":"Mobilization of a Tn <i>402</i> -Like Class 1 Integron with a Novel Cassette Array via Flanking Miniature Inverted-Repeat Transposable Element-Like Structures","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Integron; Transposable element; Biology; Genetics; Inverted repeat; Horizontal gene transfer; Gene; Escherichia coli; Genome","score_opus":0.0035423691961756175,"score_gpt":0.17491637399082025,"score_spread":0.17137400479464462,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164531970","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99555093,0.00006694856,0.0028675944,0.00012534607,0.0000998355,0.00040400066,0.0002078983,0.000026763213,0.00065066636],"genre_scores_gemma":[0.9956134,0.000074282565,0.0020099753,0.0015325071,0.000024688781,0.000015624566,0.00057961425,0.000021211552,0.00012868457],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99874943,0.000023819937,0.00030265065,0.0005074546,0.000064287335,0.00035235673],"domain_scores_gemma":[0.9995179,0.000019047511,0.0001575352,0.00022628234,0.0000020217574,0.00007717193],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000057898604,0.00029551645,0.00029434435,0.00004337804,0.00014991705,0.000017655619,0.00016113244,0.00019111602,0.00068240624],"category_scores_gemma":[5.606977e-7,0.00024076083,0.000056886776,0.00009697839,0.0003675416,0.00012885754,0.000056587025,0.00023331217,0.000020403335],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012425455,0.00017188411,0.0013675075,0.000009623956,0.00003786765,0.00000209344,0.0006083647,0.00019911039,0.99456704,0.000025686399,0.00034590528,0.0025406703],"study_design_scores_gemma":[0.00357573,0.0011248123,0.073786244,0.00005928509,0.00024687147,0.00071659643,0.0009895995,0.00016814489,0.8565883,0.00022508764,0.061436266,0.0010830681],"about_ca_topic_score_codex":0.00017258743,"about_ca_topic_score_gemma":0.00032855463,"teacher_disagreement_score":0.13797873,"about_ca_system_score_codex":0.00011993242,"about_ca_system_score_gemma":0.0000053283047,"threshold_uncertainty_score":0.9817941},"labels":[],"label_agreement":null},{"id":"W2164584243","doi":"10.1128/aem.69.11.6393-6398.2003","title":"Assessment of Photodynamic Destruction of <i>Escherichia coli</i> O157:H7 and <i>Listeria monocytogenes</i> by Using ATP Bioluminescence","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Photodynamic Therapy Research Studies","field":"Medicine","cited_by":98,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Canadian Institute for Public Safety Research and Treatment","funders":"","keywords":"Bioluminescence; Listeria monocytogenes; Escherichia coli; Microbiology; Methylene blue; Antimicrobial; Bacteria; Bioreporter; Intracellular; Chemistry; Extracellular; Formazan; Biology; Biochemistry","score_opus":0.010627837938053131,"score_gpt":0.256043591363671,"score_spread":0.24541575342561786,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164584243","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99827564,0.0008029902,0.00013445805,0.000012068147,0.000036830963,0.00040513152,0.00014895933,0.000006875262,0.00017704985],"genre_scores_gemma":[0.9966308,0.0013692627,0.0017453266,0.00010767603,0.0000061023266,0.000016213025,0.00008503549,0.000016112232,0.000023478036],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991475,0.00004200889,0.00026143243,0.00028750458,0.000049789356,0.00021178041],"domain_scores_gemma":[0.9996306,0.00003088816,0.00012713819,0.00014540285,0.000005022984,0.000060990504],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011042448,0.0001670931,0.00039293242,0.000042394306,0.000060313843,0.0000029874566,0.000044069377,0.000099402925,0.000026209378],"category_scores_gemma":[0.000002811231,0.00015074821,0.00003203994,0.00005998532,0.00072715484,0.000022229266,0.0000732388,0.000095248986,3.9749432e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008520045,0.00011678421,0.014190506,0.000082200095,0.0000860038,0.0000010546887,0.000071920076,0.0000020394355,0.98494434,0.000039548664,0.000009185008,0.00037118918],"study_design_scores_gemma":[0.001948193,0.00034710107,0.027696634,0.00002977196,0.000077994475,0.00014727109,0.00052058965,0.00010200762,0.96798146,0.000029418668,0.00094769825,0.00017184076],"about_ca_topic_score_codex":0.00004981942,"about_ca_topic_score_gemma":0.000002595361,"teacher_disagreement_score":0.01696289,"about_ca_system_score_codex":0.00007819059,"about_ca_system_score_gemma":0.000022686418,"threshold_uncertainty_score":0.61473334},"labels":[],"label_agreement":null},{"id":"W2164633657","doi":"10.1128/aem.00159-07","title":"Probiotics Affect Virulence-Related Gene Expression in <i>Escherichia coli</i> O157:H7","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":222,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; University of Guelph; Canadian Institute for Public Safety Research and Treatment","funders":"","keywords":"Virulence; Biology; Escherichia coli; Microbiology; Gene; Quorum sensing; Lactobacillus acidophilus; Shiga toxin; Gene expression; Pathogenicity island; Bacteria; Genetics","score_opus":0.00457787147763125,"score_gpt":0.21107430462531587,"score_spread":0.20649643314768462,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164633657","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996809,0.001350212,0.00019985152,0.00003559452,0.0000662218,0.000431654,0.000032374395,0.000012505076,0.0010625538],"genre_scores_gemma":[0.9963394,0.0012101631,0.0015628849,0.00031728364,0.00005432308,0.000030948802,0.00026915933,0.000026018186,0.00018985025],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99862987,0.000055763834,0.00025833634,0.0005064063,0.000049154398,0.00050049386],"domain_scores_gemma":[0.9995916,0.000030484853,0.00006789787,0.00021658382,0.0000033404222,0.00009011751],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031863872,0.00023224179,0.00022221617,0.000050001076,0.00010390895,0.000008403827,0.0001511547,0.0002976156,0.000020896288],"category_scores_gemma":[0.000011009016,0.00021213626,0.00004299395,0.000078968245,0.00041245983,0.0000033974327,0.00037656404,0.0002162253,0.000020853171],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015866938,0.00013531146,0.008021093,0.000013530555,0.000031665273,0.000007797759,0.00008380584,0.00001413446,0.9907326,0.000025024876,0.00018673655,0.00058964797],"study_design_scores_gemma":[0.0010553254,0.0002817122,0.021235123,0.000009877781,0.000008737991,0.000023180673,0.00022452007,0.0000052345263,0.96896464,0.000035349807,0.007887174,0.00026914963],"about_ca_topic_score_codex":0.0000063669127,"about_ca_topic_score_gemma":0.000028423972,"teacher_disagreement_score":0.021767968,"about_ca_system_score_codex":0.000042094518,"about_ca_system_score_gemma":0.00001546357,"threshold_uncertainty_score":0.8650666},"labels":[],"label_agreement":null},{"id":"W2164902222","doi":"10.1128/aem.00797-08","title":"Soil Formate Regulates the Fungal Nitrous Oxide Emission Pathway","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Nitrous oxide; Denitrification; Formate; Soil water; Environmental chemistry; Chemistry; Nitrogen; Nitrate; Oxygen; Aerobic denitrification; Botany; Biology; Biochemistry; Ecology; Denitrifying bacteria","score_opus":0.005156332642423371,"score_gpt":0.15530235203220363,"score_spread":0.15014601938978026,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164902222","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99596936,0.00011615834,0.0000089136165,0.00016530453,0.00006368511,0.0001983411,0.00003497108,0.000031607717,0.0034116923],"genre_scores_gemma":[0.9972319,0.0002752399,0.00009192135,0.0014602969,0.000026161759,0.000020562875,0.00019383036,0.0000147940955,0.00068531465],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989232,0.000121108926,0.00021391713,0.00030226712,0.000033769815,0.00040573598],"domain_scores_gemma":[0.99942756,0.00009738348,0.00008595435,0.00031413455,6.03493e-7,0.00007439484],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00014855321,0.00021564229,0.00021381544,0.0000169197,0.00087970664,0.000005550057,0.0002992333,0.00020700037,0.0012808769],"category_scores_gemma":[0.0000029466378,0.00015139654,0.00005108053,0.000047399197,0.0015134385,0.000057764195,0.00064492656,0.00032207,0.00063155335],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005456168,0.00007264412,0.011956888,0.0000023497341,0.0000149693105,0.0000063991197,0.0004719474,0.00006357174,0.9818028,0.000057444176,0.0046569915,0.0008394397],"study_design_scores_gemma":[0.0021970435,0.0004378076,0.25750718,0.000008905244,0.000053311967,0.0037943735,0.0011911641,0.00009166845,0.4956797,0.0035971384,0.23431146,0.0011302307],"about_ca_topic_score_codex":0.0001336579,"about_ca_topic_score_gemma":0.00008763702,"teacher_disagreement_score":0.48612309,"about_ca_system_score_codex":0.000062080355,"about_ca_system_score_gemma":0.0000052276864,"threshold_uncertainty_score":0.99963206},"labels":[],"label_agreement":null},{"id":"W2164949880","doi":"10.1128/aem.00441-08","title":"Changes in Bacterial Denitrifier Community Abundance over Time in an Agricultural Field and Their Relationship with Denitrification Activity","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":153,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Nova Scotia Department of Agriculture; Agriculture and Agri-Food Canada","funders":"","keywords":"Abundance (ecology); Denitrification; Biology; Community structure; Relative species abundance; Denitrifying bacteria; Microbial population biology; Ecology; Nitrogen; Bacteria; Chemistry; Genetics","score_opus":0.010375790791686459,"score_gpt":0.17688238524392624,"score_spread":0.16650659445223978,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164949880","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995456,0.00001837418,0.0000030126164,0.000049774462,0.000008909528,0.00021864582,0.00001722385,0.000008719779,0.0001297763],"genre_scores_gemma":[0.99939835,0.000031513595,0.00025369535,0.000049334256,0.000012011057,0.00001607099,0.00015388927,0.000006786934,0.00007836679],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993727,0.00011185508,0.000090263784,0.00022198942,0.000024466413,0.00017871802],"domain_scores_gemma":[0.9997264,0.00007331958,0.000040936964,0.000116590374,3.4834864e-7,0.000042388518],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007368383,0.0001470403,0.00014649706,0.000030025112,0.00013617626,0.000008621628,0.00007049311,0.00010971645,0.0001619433],"category_scores_gemma":[0.0000010427682,0.00010383257,0.000009351469,0.000058598278,0.00026840143,0.00011926973,0.000077056604,0.00018489486,0.00003077438],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000103927785,0.00010557191,0.31063357,9.92133e-7,0.000002977871,0.0000020697794,0.0007246822,0.000003727718,0.6879443,0.0000015387757,0.0000073560705,0.0004692894],"study_design_scores_gemma":[0.0008133451,0.00015224623,0.8674375,0.00000288113,0.0000041242356,0.00009249636,0.00021526172,0.000011127302,0.13104947,0.000029515013,0.000059147478,0.00013289774],"about_ca_topic_score_codex":0.00025048654,"about_ca_topic_score_gemma":0.0015467982,"teacher_disagreement_score":0.55689484,"about_ca_system_score_codex":0.00007537777,"about_ca_system_score_gemma":0.0000018482658,"threshold_uncertainty_score":0.42341694},"labels":[],"label_agreement":null},{"id":"W2165223701","doi":"10.1128/aem.00815-08","title":"In Situ Detection of Freshwater Fungi in an Alpine Stream by New Taxon-Specific Fluorescence In Situ Hybridization Probes","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Mount Allison University","keywords":"In situ; Taxon; Biology; In situ hybridization; Fluorescence in situ hybridization; Fluorescence; Ecology; Geography; Genetics","score_opus":0.004820802260445412,"score_gpt":0.16856967629868091,"score_spread":0.16374887403823551,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165223701","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980925,0.0012946859,0.000075983786,0.0000071599857,0.000019959625,0.0001853763,0.00028771185,0.0000024420742,0.00003421941],"genre_scores_gemma":[0.995825,0.0021624097,0.0001492563,0.000054452634,0.000025897667,0.0000145129925,0.0017352,0.000008768582,0.000024508552],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99927884,0.000029043586,0.00018972441,0.00030870142,0.000021307947,0.00017239933],"domain_scores_gemma":[0.99980646,0.0000042804586,0.000043127995,0.00010319294,0.0000012914411,0.000041658946],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003456787,0.0001221766,0.0001420538,0.00005634482,0.00001941965,0.0000025504482,0.000061591956,0.000121449215,0.000011869466],"category_scores_gemma":[0.0000011629393,0.000119748736,0.000017041222,0.00004293959,0.00010188621,0.000007351413,0.00004965073,0.00005892942,0.0000032368619],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001335019,0.00019598083,0.026547814,0.0000060790576,0.0000034945142,0.000007954265,0.00004908412,0.000030140642,0.9714409,0.0000028353616,0.00015204381,0.0014301719],"study_design_scores_gemma":[0.0007003275,0.0001497412,0.064387165,0.000005879378,0.0000022188808,0.000030853495,0.000059163944,0.0000062014897,0.93221015,0.000008183815,0.0023106618,0.00012945065],"about_ca_topic_score_codex":0.000040357583,"about_ca_topic_score_gemma":0.0006839144,"teacher_disagreement_score":0.03923075,"about_ca_system_score_codex":0.000018775345,"about_ca_system_score_gemma":0.000007961057,"threshold_uncertainty_score":0.4883212},"labels":[],"label_agreement":null},{"id":"W2165266899","doi":"10.1128/aem.00580-06","title":"Characterization of the β-Ketoadipate Pathway in<i>Sinorhizobium meliloti</i>","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Institute for Catastrophic Loss Reduction; Ontario Genomics Institute; Genome Canada","keywords":"Sinorhizobium meliloti; Operon; Biology; Agrobacterium tumefaciens; Gene; Sinorhizobium; Genetics; Mutant; Biochemistry; Rhizobiaceae; Bacteria; Transformation (genetics); Symbiosis","score_opus":0.003169163279028842,"score_gpt":0.13284406081080005,"score_spread":0.12967489753177122,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165266899","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991259,0.000044612105,9.1095934e-8,0.00017412471,0.000046806086,0.00014673118,0.00013688108,0.000008396241,0.00031647622],"genre_scores_gemma":[0.9993999,0.00000830537,0.000008379922,0.00020753055,0.000040337036,0.000009525287,0.00026667604,9.657134e-7,0.000058368623],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99944687,0.000031819345,0.0001624725,0.00017925783,0.000025879466,0.00015368896],"domain_scores_gemma":[0.9998429,0.000022804157,0.00007749891,0.000042077725,0.0000011216301,0.000013603714],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000053996726,0.0000921095,0.00011624989,0.00000610532,0.00005659667,0.0000049773003,0.00010792284,0.000083550185,0.000065968576],"category_scores_gemma":[6.6743127e-7,0.00003469203,0.000031774292,0.000068829955,0.0001396185,0.000022288688,0.00008744683,0.000059788403,0.000012220121],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000006862325,0.000054940523,0.02831624,0.0000016093337,0.000002478458,2.1329782e-7,0.000016940028,7.574e-8,0.9701587,0.00015542017,0.0000081582875,0.001278364],"study_design_scores_gemma":[0.00008895447,0.000017092569,0.360629,0.0000022907657,0.0000023147475,0.000004200136,0.000020507687,1.7224576e-7,0.6378858,0.00009860117,0.0011954226,0.000055627286],"about_ca_topic_score_codex":0.000110488996,"about_ca_topic_score_gemma":0.000086403656,"teacher_disagreement_score":0.33231276,"about_ca_system_score_codex":0.000018075087,"about_ca_system_score_gemma":0.0000013850162,"threshold_uncertainty_score":0.14147},"labels":[],"label_agreement":null},{"id":"W2165369540","doi":"10.1128/aem.00182-10","title":"Verotoxin 2 Enhances Adherence of Enterohemorrhagic <i>Escherichia coli</i> O157:H7 to Intestinal Epithelial Cells and Expression of β1-Integrin by IPEC-J2 Cells","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Escherichia coli; Microbiology; Bacteria; Enterobacteriaceae; Cell biology; Integrin; Biology; Chemistry; Biochemistry; Cell; Gene; Genetics","score_opus":0.0034320459552001233,"score_gpt":0.20011091205010212,"score_spread":0.19667886609490198,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165369540","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99854445,0.0002682976,0.00022198207,0.000018469193,0.00008764818,0.00036443194,0.00028830697,0.000004262562,0.00020213611],"genre_scores_gemma":[0.9963433,0.0005029461,0.002710452,0.00013427476,0.00004137178,0.000058980404,0.00007497494,0.000015398533,0.000118298754],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989454,0.00004374374,0.00025440083,0.0004316399,0.000054892353,0.00026993066],"domain_scores_gemma":[0.999533,0.000038996615,0.00011690895,0.00020102078,0.0000088816105,0.00010119549],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011850636,0.00021101079,0.0002806903,0.000026164196,0.000055698412,0.000006272077,0.00019152772,0.00016232432,0.00004676711],"category_scores_gemma":[0.0000114452405,0.00018256811,0.00003808768,0.000036281046,0.0006481509,0.0000037440143,0.0004668344,0.00019483383,0.000007079222],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020581257,0.00013772777,0.0008457491,0.00004091306,0.000020729494,6.1802126e-7,0.000118479904,9.752163e-7,0.99734694,0.0000067967426,0.0005574188,0.0007178267],"study_design_scores_gemma":[0.00053599733,0.00063276663,0.0005382499,0.000013371703,0.000010357559,0.0000064897968,0.000249091,0.0000027031272,0.9925273,0.000012985363,0.0053032646,0.00016738952],"about_ca_topic_score_codex":0.000027853388,"about_ca_topic_score_gemma":0.000017000113,"teacher_disagreement_score":0.0048196195,"about_ca_system_score_codex":0.000006984887,"about_ca_system_score_gemma":0.000014320673,"threshold_uncertainty_score":0.74449116},"labels":[],"label_agreement":null},{"id":"W2165381214","doi":"10.1128/aem.01055-14","title":"Suicin 90-1330 from a Nonvirulent Strain of Streptococcus suis: a Nisin-Related Lantibiotic Active on Gram-Positive Swine Pathogens","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Fonds de Recherche du Québec - Santé; Université Laval","funders":"","keywords":"Streptococcus suis; Bacteriocin; Microbiology; Biology; Nisin; Listeria monocytogenes; Lantibiotics; Staphylococcus aureus; Bacteria; Antimicrobial; Biochemistry; Virulence","score_opus":0.004013133121512664,"score_gpt":0.1574527233836531,"score_spread":0.15343959026214044,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165381214","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99576575,0.00007054992,0.000005072938,0.00015135469,0.00005467547,0.00035502703,0.002936872,0.000019760506,0.0006409384],"genre_scores_gemma":[0.9973404,0.000084632666,0.00004453126,0.0002449505,0.000050655708,0.000006196606,0.0021912316,0.000002948101,0.00003448266],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988347,0.00007477187,0.000265057,0.00046577613,0.000051979176,0.00030766943],"domain_scores_gemma":[0.9995404,0.00014540597,0.00014109627,0.00008389501,0.0000032742234,0.000085930216],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000093411625,0.00023564424,0.00032351486,0.00001681611,0.000107128726,0.000010759184,0.00014066255,0.00022271181,0.00022367925],"category_scores_gemma":[0.0000036813324,0.00011148692,0.000077135475,0.00006145261,0.00027971747,0.000019208881,0.0001198622,0.0001715918,0.000049101785],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008939124,0.0002873473,0.0017901041,0.0000026157636,0.000070273265,0.000002127872,0.00013965942,0.000004930666,0.96587354,0.00056567264,0.000016374002,0.031157939],"study_design_scores_gemma":[0.0016148944,0.002378319,0.46808147,0.00005849668,0.00011056834,0.000015264106,0.0014853296,0.000060734903,0.5219022,0.0016116163,0.0020624674,0.0006186703],"about_ca_topic_score_codex":0.00013165391,"about_ca_topic_score_gemma":0.000052646566,"teacher_disagreement_score":0.46629137,"about_ca_system_score_codex":0.000032875676,"about_ca_system_score_gemma":0.0000023028508,"threshold_uncertainty_score":0.4546305},"labels":[],"label_agreement":null},{"id":"W2165524236","doi":"10.1128/aem.01480-10","title":"Induction of Fatty Acid Composition Modifications and Tolerance to Biocides in <i>Salmonella enterica</i> Serovar Typhimurium by Plant-Derived Terpenes","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Essential Oils and Antimicrobial Activity","field":"Agricultural and Biological Sciences","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Cegep de Saint Hyacinthe","funders":"","keywords":"Salmonella enterica; Biocide; Peracetic acid; Antimicrobial; Carvacrol; Preservative; Chemistry; Eugenol; Food Preservatives; Food science; Thymol; Bacteria; Biochemistry; Disinfectant; Biology; Microbiology; Salmonella; Organic chemistry; Essential oil","score_opus":0.004883330513374787,"score_gpt":0.16467544033965809,"score_spread":0.1597921098262833,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165524236","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99896765,0.000041482173,0.000011077386,0.0003613814,0.00005334057,0.00014311711,0.00038228545,0.000008275369,0.000031395917],"genre_scores_gemma":[0.9991251,0.00012857256,0.0001981033,0.00017136818,0.000027864771,0.000010162382,0.00033252148,0.0000010920206,0.0000051776815],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994515,0.000017640645,0.00013601608,0.00024672775,0.000018133198,0.00012999303],"domain_scores_gemma":[0.9998447,0.000022492639,0.00005623824,0.000033227487,0.0000018512484,0.000041495638],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000040755804,0.00010127007,0.00014895218,0.000010606974,0.00007699854,0.000010930033,0.00006128777,0.000095316056,0.00002608964],"category_scores_gemma":[6.3931003e-7,0.000054422926,0.00001639251,0.00004781372,0.00016536786,0.000041272855,0.000064884945,0.000092038674,0.000004190535],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034340526,0.00011937418,0.0038437406,0.0000047747594,0.0000036043753,2.1878687e-7,0.00004937388,0.0000011620708,0.99117416,0.000023811577,0.000033749082,0.004711675],"study_design_scores_gemma":[0.00012962107,0.000059474965,0.08730503,0.000004773823,0.0000035383384,0.000015866575,0.000062360356,0.0000037491752,0.9117299,0.00002645224,0.00056020945,0.00009905187],"about_ca_topic_score_codex":0.000128682,"about_ca_topic_score_gemma":0.00009237105,"teacher_disagreement_score":0.08346129,"about_ca_system_score_codex":0.0000057557313,"about_ca_system_score_gemma":7.9791573e-7,"threshold_uncertainty_score":0.22193025},"labels":[],"label_agreement":null},{"id":"W2165529850","doi":"10.1128/aem.69.11.6938-6942.2003","title":"Isolation and Identification of <i>Photobacterium phosphoreum</i> from an Unexpected Niche: Migrating Salmon","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"U.S. Fish and Wildlife Service","keywords":"Photobacterium phosphoreum; Photobacterium; Biology; Isolation (microbiology); Marine bacteriophage; Bacteria; Vibrionaceae; Microbiology; Niche; Vibrio; Ecology; Genetics","score_opus":0.0037905739759093063,"score_gpt":0.18035455634734124,"score_spread":0.17656398237143192,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165529850","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991043,0.0000943997,0.000093064205,0.00001991895,0.00005461648,0.00016769119,0.0000803581,0.000012943843,0.00037265837],"genre_scores_gemma":[0.99834645,0.000113274255,0.0005702139,0.00023026939,0.0000080139125,0.000011421546,0.0006852586,0.00001068999,0.000024404075],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99903715,0.00015625918,0.0002744223,0.00033352766,0.00002128697,0.00017735483],"domain_scores_gemma":[0.99950534,0.00007007127,0.00015590049,0.00021685724,0.0000010181253,0.000050822495],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000124774,0.0001486954,0.0001994699,0.00001879524,0.00015853428,0.0000071652244,0.000101841666,0.00018147068,0.00093182514],"category_scores_gemma":[0.00000593154,0.00014985644,0.000019251609,0.000046882073,0.0005244583,0.00007571706,0.0001225081,0.00014130225,0.000034751592],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003363963,0.000091295515,0.041639682,0.0000025132679,0.000012161263,2.3728913e-7,0.00061802665,0.000014177282,0.956951,0.00008540946,0.000059786085,0.00049203384],"study_design_scores_gemma":[0.0006233474,0.00016291016,0.26701882,0.0000028229758,0.00003416645,0.000023814078,0.0008735456,0.00006886876,0.7271221,0.0014221013,0.002381069,0.00026638678],"about_ca_topic_score_codex":0.000264263,"about_ca_topic_score_gemma":0.00021381496,"teacher_disagreement_score":0.22982888,"about_ca_system_score_codex":0.000034147033,"about_ca_system_score_gemma":0.0000027440014,"threshold_uncertainty_score":0.99998146},"labels":[],"label_agreement":null},{"id":"W2165595211","doi":"10.1128/aem.67.2.569-574.2001","title":"Identification of Bacteriocin-Like Inhibitors from Rumen <i>Streptococcus</i> spp. and Isolation and Characterization of Bovicin 255","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Lethbridge; Lethbridge College; Agriculture and Agri-Food Canada","funders":"","keywords":"Ammonium sulfate precipitation; Bacteriocin; Biology; Microbiology; Streptococcus bovis; Bacteria; Streptococcus dysgalactiae; Biochemistry; Peptide; Gel electrophoresis; Antibacterial activity; Nisin; Streptococcus agalactiae; Streptococcus; Rumen; Size-exclusion chromatography; Fermentation; Antimicrobial; Enzyme","score_opus":0.0036222218806200904,"score_gpt":0.15295407533374192,"score_spread":0.14933185345312183,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165595211","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993337,0.00008385105,0.000010084549,0.00009179249,0.000030293828,0.00017518488,0.00024573618,0.0000052689497,0.000024088828],"genre_scores_gemma":[0.9983168,0.0006679604,0.000016866017,0.000065768785,0.000025620431,0.000004393174,0.0008845896,9.996706e-7,0.00001698826],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994427,0.00001690935,0.00022512043,0.00020426253,0.000021288939,0.000089718094],"domain_scores_gemma":[0.99976575,0.00002007696,0.00014990536,0.000032893615,0.000002428574,0.00002895195],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000055395012,0.0000875801,0.00013724697,0.000009817452,0.000051771127,0.000008857517,0.000036331687,0.000094686664,0.000048196092],"category_scores_gemma":[6.585975e-7,0.00004666816,0.000013535645,0.000035448043,0.00015756443,0.000044349985,0.00006648693,0.000036835117,0.0000018279735],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025166226,0.00004205535,0.052007318,0.0000040974114,0.0000092605615,9.343592e-8,0.000077984485,8.6664734e-8,0.9369587,0.000018170664,0.0000022798629,0.010854819],"study_design_scores_gemma":[0.00021877213,0.00012713824,0.7123157,0.000007827306,0.000016128013,0.0000042827755,0.00018645654,0.000022065826,0.28558618,0.000078452635,0.001345696,0.000091325564],"about_ca_topic_score_codex":0.000028296834,"about_ca_topic_score_gemma":0.00000846256,"teacher_disagreement_score":0.66030836,"about_ca_system_score_codex":0.000006691838,"about_ca_system_score_gemma":7.8978405e-7,"threshold_uncertainty_score":0.19030723},"labels":[],"label_agreement":null},{"id":"W2165813819","doi":"10.1128/aem.02100-08","title":"Prevalence and Impact of Bacteriophages on the Presence of <i>Escherichia coli</i> O157:H7 in Feedlot Cattle and Their Environment","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; Agriculture and Agri-Food Canada; Agriculture Food and Rural Development","funders":"Johnson and Johnson; Public Health Agency of Canada","keywords":"Feces; Veterinary medicine; Escherichia coli; Fecal coliform; Biology; Slurry; Animal science; Manure; Microbiology; Water quality; Ecology; Medicine; Environmental science; Environmental engineering","score_opus":0.00513456213465455,"score_gpt":0.19303172428068843,"score_spread":0.18789716214603389,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165813819","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99873924,0.0002675242,0.0000064721953,0.00013621361,0.000015801847,0.00030995155,0.00013265958,0.0000038005346,0.00038834795],"genre_scores_gemma":[0.99825734,0.0013659097,0.00007910733,0.00018711518,0.0000064976048,0.000011650183,0.000012242242,0.000008015466,0.00007210779],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991535,0.000049940303,0.00023177754,0.0003227395,0.000030229186,0.00021183168],"domain_scores_gemma":[0.99953896,0.00010290056,0.00011680535,0.00018836233,4.837088e-7,0.000052519074],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000110590685,0.00019548934,0.00023021009,0.000024528661,0.00006561934,0.0000086175405,0.00012276598,0.00008224733,0.0004564168],"category_scores_gemma":[0.0000029251864,0.00012908525,0.00003803998,0.000039068924,0.0007728951,0.00006139356,0.00017807173,0.00014064628,0.000011218844],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059236896,0.00015007901,0.011311791,0.000008664018,0.000012480646,3.4287058e-7,0.00053855916,0.0000512985,0.98496497,0.000026978947,0.000044320204,0.002831258],"study_design_scores_gemma":[0.00030318124,0.00037423032,0.8744652,0.000017595166,0.00001005256,0.000022809436,0.00017212806,0.000009840836,0.12415285,0.000064507505,0.00028298981,0.00012460725],"about_ca_topic_score_codex":0.00013818582,"about_ca_topic_score_gemma":0.00000870806,"teacher_disagreement_score":0.8631534,"about_ca_system_score_codex":0.000054230895,"about_ca_system_score_gemma":0.000002863884,"threshold_uncertainty_score":0.52639437},"labels":[],"label_agreement":null},{"id":"W2165878700","doi":"10.1128/aem.01507-07","title":"Identification of <i>Campylobacter jejuni</i> Genes Involved in the Response to Acidic pH and Stomach Transit","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":104,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Campylobacter jejuni; Biology; Gene; Microbiology; Heat shock protein; Gene expression; Stomach; Gene expression profiling; Heat shock; Biochemistry; Bacteria; Genetics","score_opus":0.011836624029977818,"score_gpt":0.18613266013315818,"score_spread":0.17429603610318037,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165878700","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982141,0.0004463159,0.000004025262,0.0009802256,0.00002303909,0.00023369606,0.00006653932,0.000007159668,0.000024863743],"genre_scores_gemma":[0.99819744,0.0005188865,0.000017827004,0.0011072814,0.000025069332,0.00002505916,0.00008737014,0.0000010361114,0.000020024445],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99904543,0.00019638184,0.00025404964,0.00028274785,0.00003028821,0.00019112161],"domain_scores_gemma":[0.9995927,0.00023635787,0.00006250585,0.000065326974,0.0000018751049,0.000041190935],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003698065,0.0001194199,0.00019732043,0.000016626895,0.00009629708,0.00000473998,0.00013968138,0.00011346814,0.000030981275],"category_scores_gemma":[0.000005412349,0.000049328508,0.000028074908,0.00008465144,0.00039127524,0.000023341318,0.00005458389,0.00007642736,0.000012079003],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019407806,0.000063473846,0.039856937,0.0000019870806,0.000005441412,0.0000020144726,0.000464422,0.0000013106604,0.9551834,0.000028407474,0.000048727656,0.004149843],"study_design_scores_gemma":[0.00028695946,0.0002203895,0.93162525,0.0000025820393,0.000009397551,0.000106436935,0.0015367497,0.0000019921615,0.060269117,0.000115353636,0.0056871693,0.00013861334],"about_ca_topic_score_codex":0.000047807553,"about_ca_topic_score_gemma":0.00006671672,"teacher_disagreement_score":0.89491427,"about_ca_system_score_codex":0.000011065981,"about_ca_system_score_gemma":0.0000017974525,"threshold_uncertainty_score":0.20115581},"labels":[],"label_agreement":null},{"id":"W2166005283","doi":"10.1128/aem.02991-05","title":"Lack of Evidence for Vertical Transmission of <i>Campylobacter</i> spp. in Chickens","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency","funders":"Agricultural Research Service","keywords":"Campylobacter; Flock; Biology; Hatchery; Horizontal transmission; Campylobacter jejuni; Campylobacteriosis; Transmission (telecommunications); Veterinary medicine; Ecology; Virology; Genetics; Fishery; Bacteria; Medicine","score_opus":0.054049974117184915,"score_gpt":0.2512095640794438,"score_spread":0.19715958996225885,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166005283","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99885637,0.000475156,0.000025639976,0.00022836629,0.000022194823,0.00020965515,0.00007198927,0.00000522571,0.00010540436],"genre_scores_gemma":[0.99923,0.00023198547,0.00016776299,0.00013569955,0.000035860205,0.000012834861,0.00016633733,9.996564e-7,0.00001847795],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99914515,0.000042052663,0.00033211205,0.00024784837,0.000022677194,0.00021014703],"domain_scores_gemma":[0.99948925,0.0003779298,0.00006105309,0.000039585862,0.0000022402876,0.000029935823],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015309498,0.00011014391,0.0002951072,0.000009700871,0.000025428513,0.000001555749,0.00009695617,0.00014910183,0.000083344756],"category_scores_gemma":[0.0000053119948,0.000045235745,0.000059628437,0.000046621924,0.0002548106,0.000020318754,0.00003878817,0.000056079876,0.0000033223741],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013581224,0.000102107806,0.067487195,0.000013527681,0.0000040138693,2.775813e-7,0.000016332637,0.0000030917815,0.92570144,0.00024300437,0.00006506138,0.006228129],"study_design_scores_gemma":[0.0005401412,0.0003527228,0.76235986,0.000030537532,0.00001805304,0.0000149328935,0.00009897721,0.00001438543,0.22899036,0.0017525275,0.005668161,0.00015936296],"about_ca_topic_score_codex":0.00014665457,"about_ca_topic_score_gemma":0.000050553677,"teacher_disagreement_score":0.69671106,"about_ca_system_score_codex":0.000011834139,"about_ca_system_score_gemma":0.000002041793,"threshold_uncertainty_score":0.18446602},"labels":[],"label_agreement":null},{"id":"W2166194088","doi":"10.1128/aem.71.3.1610-1615.2005","title":"Natural Dissemination of <i>Bacillus anthracis</i> Spores in Northern Canada","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Parks Canada; Defence Research and Development Canada","funders":"U.S. Army Medical Research Institute of Infectious Diseases; Army Research Institute for the Behavioral and Social Sciences; Defence Research and Development Canada","keywords":"Bacillus anthracis; Spore; Contamination; Biology; Veterinary medicine; Outbreak; Bacillus (shape); Moss; Microbiology; Animal science; Botany; Ecology; Bacteria; Virology; Medicine","score_opus":0.0017442402039221404,"score_gpt":0.1808244892538381,"score_spread":0.17908024904991596,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166194088","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985303,0.00083728397,0.000006823804,0.00006739732,0.00004154909,0.00009957008,0.0000926697,0.000001171635,0.00032322307],"genre_scores_gemma":[0.9989271,0.0003321246,0.00005137315,0.00008097259,0.000052262265,0.000006574942,0.00043311203,0.000007786028,0.000108659435],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994328,0.000013110209,0.00014597167,0.00020275508,0.0000317211,0.0001736133],"domain_scores_gemma":[0.99981487,0.000011222522,0.00003875431,0.00010046199,0.0000030131741,0.00003165589],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000572278,0.00009404605,0.000118308104,0.000018632803,0.000026682557,0.0000025834436,0.000073547875,0.000081523634,0.000025808493],"category_scores_gemma":[0.0000047906083,0.00008498295,0.000016805545,0.000022321981,0.00014609362,0.000001841254,0.00007820463,0.00006273738,0.000002258786],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006965025,0.00003500004,0.008829601,0.0000056836325,0.00000821405,9.1627555e-7,0.000029280802,0.000010392086,0.9736933,0.000010858509,0.0001389977,0.017168092],"study_design_scores_gemma":[0.0005979688,0.00008471344,0.05011688,0.0000069757034,0.0000046991217,0.00002687495,0.0001915499,0.000013499534,0.9077886,0.000007959749,0.04095688,0.00020341552],"about_ca_topic_score_codex":0.002871181,"about_ca_topic_score_gemma":0.16009755,"teacher_disagreement_score":0.15722637,"about_ca_system_score_codex":0.000033761764,"about_ca_system_score_gemma":0.000026127798,"threshold_uncertainty_score":0.8552285},"labels":[],"label_agreement":null},{"id":"W2166230854","doi":"10.1128/aem.01578-10","title":"Biodiversity of <i>Clostridium botulinum</i> Type E Associated with a Large Outbreak of Botulism in Wildlife from Lake Erie and Lake Ontario","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Botulinum Toxin and Related Neurological Disorders","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"University of Pennsylvania","keywords":"Clostridium botulinum; Botulism; RAPD; Outbreak; Biology; Veterinary medicine; Wildlife; Toxin; Microbiology; Ecology; Genetic diversity; Virology; Medicine","score_opus":0.004367299572341979,"score_gpt":0.1628830363995615,"score_spread":0.15851573682721953,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166230854","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981588,0.000072757946,0.00000128535,0.00025486288,0.00005241445,0.00022069197,0.00088503526,0.000010139643,0.00034401898],"genre_scores_gemma":[0.99764633,0.00019469268,0.00008943651,0.00093424803,0.000006611593,0.000002030968,0.0010625259,0.0000070450455,0.000057048306],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99924326,0.00002147772,0.00020679695,0.00028454798,0.000041382496,0.00020254616],"domain_scores_gemma":[0.999634,0.000060587925,0.000107661785,0.000119561984,0.000003892774,0.0000742588],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000069564274,0.00015348173,0.00038852444,0.00003965065,0.000033474073,0.0000018795131,0.00005197422,0.00035372237,0.00059157785],"category_scores_gemma":[0.000007894574,0.000116491814,0.000030331084,0.00005982054,0.0005254091,0.000016351098,0.00010194514,0.0004306646,0.000006342527],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00059984816,0.00047945473,0.5002081,0.000008750353,0.00009651675,0.000017641094,0.0003304826,8.1216695e-7,0.49779633,0.000016387094,0.00032589442,0.00011983515],"study_design_scores_gemma":[0.008346814,0.0009315258,0.9487349,0.000027505881,0.00018909592,0.000044120792,0.0002599502,0.0000035471335,0.010690897,0.000113886614,0.030407075,0.00025069798],"about_ca_topic_score_codex":0.00026007733,"about_ca_topic_score_gemma":0.06427902,"teacher_disagreement_score":0.48710543,"about_ca_system_score_codex":0.000011057323,"about_ca_system_score_gemma":0.000022059587,"threshold_uncertainty_score":0.95279545},"labels":[],"label_agreement":null},{"id":"W2166288132","doi":"10.1128/aem.68.10.5181-5185.2002","title":"Free-Living Heterotrophic Nitrogen-Fixing Bacteria Isolated from Fuel-Contaminated Antarctic Soils","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":103,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Soil water; Bacteria; Heterotroph; Environmental science; Nitrogen; Contamination; Nitrogen fixation; Environmental chemistry; Biology; Ecology; Chemistry","score_opus":0.006364159939814303,"score_gpt":0.16200655276664488,"score_spread":0.1556423928268306,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166288132","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979133,0.00028089818,0.000032836106,0.00010463894,0.00015356432,0.00026578282,0.00021365043,0.000060918712,0.00097443105],"genre_scores_gemma":[0.99753857,0.00033004736,0.00027413655,0.0011920303,0.000048544916,0.000025114905,0.00045255496,0.000032971515,0.000106051615],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99818087,0.00023129792,0.00034196326,0.0006119888,0.00003889965,0.0005949564],"domain_scores_gemma":[0.9990424,0.00018192588,0.00013666108,0.00051352446,0.000001036159,0.0001244382],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00011207802,0.00035564494,0.0004066546,0.000043538672,0.00037310075,0.000020958905,0.00045120425,0.0003648664,0.029952465],"category_scores_gemma":[0.0000077824725,0.00035608484,0.0000706643,0.00007887582,0.00086016045,0.00011018499,0.0010252726,0.00044583564,0.0012528471],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043239677,0.0001792426,0.014672097,0.0000055910964,0.00006553527,0.00000863972,0.00076228875,0.000019168547,0.98256224,0.0000107741025,0.0008085387,0.0008626129],"study_design_scores_gemma":[0.013660349,0.0033340992,0.72202003,0.00017638282,0.0007792858,0.0017631623,0.0025021199,0.0033307744,0.14364882,0.01906785,0.082315125,0.0074019902],"about_ca_topic_score_codex":0.00043654526,"about_ca_topic_score_gemma":0.00029602443,"teacher_disagreement_score":0.83891344,"about_ca_system_score_codex":0.00013926983,"about_ca_system_score_gemma":0.000001829474,"threshold_uncertainty_score":0.99988914},"labels":[],"label_agreement":null},{"id":"W2166347610","doi":"10.1128/aem.68.10.4722-4730.2002","title":"Functional Expression of Enterobacterial O-Polysaccharide Biosynthesis Enzymes in <i>Bacillus subtilis</i>","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Carbohydrate Chemistry and Synthesis","field":"Chemistry","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Austrian Science Fund","keywords":"Bacillus subtilis; Glycosyltransferase; Biochemistry; Escherichia coli; Enzyme; Biology; Levansucrase; Biosynthesis; Plasmid; Heterologous expression; Shuttle vector; Bacteria; Lipid A; Gene; Microbiology; Recombinant DNA; Genetics","score_opus":0.00868831127018517,"score_gpt":0.1506807687364688,"score_spread":0.14199245746628364,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166347610","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974639,0.00040726073,0.0000024531055,0.000029922523,0.00004405064,0.000036915128,0.0002071667,0.000014248131,0.001794097],"genre_scores_gemma":[0.9992145,0.00027723706,0.00003670868,0.000043299104,0.00006394456,0.000018909685,0.00011279156,0.000013076151,0.00021958188],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99913937,0.000011798379,0.00027067552,0.0003276625,0.000038307728,0.0002121635],"domain_scores_gemma":[0.99961275,0.00008106392,0.00008633466,0.00017130982,0.0000010889512,0.00004743812],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00004083821,0.00017691919,0.00025270486,0.000034244975,0.000041524523,0.0000060487237,0.00009328039,0.00019766274,0.0066200173],"category_scores_gemma":[0.000004730354,0.0001678208,0.00005626621,0.000027123671,0.00023688309,0.000031185224,0.00009893036,0.0001051806,0.00002682109],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000079218145,0.0001566728,0.002015586,0.00003200429,0.000013717712,0.0000029272708,0.000114026756,0.0000022453733,0.99628764,0.00001544247,0.00014690358,0.001133585],"study_design_scores_gemma":[0.0005510581,0.000007638393,0.00037807348,0.000018494646,0.00001252699,0.000029480985,0.00024919075,0.0000056053545,0.9968285,0.000017407243,0.0017486095,0.00015339076],"about_ca_topic_score_codex":0.0000092395885,"about_ca_topic_score_gemma":0.0000020523644,"teacher_disagreement_score":0.006593196,"about_ca_system_score_codex":0.000041347113,"about_ca_system_score_gemma":0.0000021777903,"threshold_uncertainty_score":0.9942881},"labels":[],"label_agreement":null},{"id":"W2166396710","doi":"10.1128/aem.02554-08","title":"Prevalence of<i>Rickettsia</i>Species in Canadian Populations of<i>Dermacentor andersoni</i>and<i>D. variabilis</i>","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Dermacentor variabilis; Dermacentor; Biology; Rickettsia rickettsii; Rocky Mountain spotted fever; Rickettsia; Sympatry; Spotted fever; Tick; Zoology; Ixodes; Virology; Ixodidae; Sympatric speciation; Virus","score_opus":0.007289179018280928,"score_gpt":0.1940874243451135,"score_spread":0.18679824532683256,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166396710","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947803,0.0034735573,0.000007986967,0.000121342615,0.00008937538,0.00025847153,0.0003469427,0.000012224907,0.00090977334],"genre_scores_gemma":[0.99876434,0.0006312196,0.00004702383,0.00026310366,0.000007908308,0.000009472327,0.0001634461,0.000007648045,0.00010586034],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990183,0.00006410745,0.0002841328,0.00029078295,0.000011624969,0.0003310339],"domain_scores_gemma":[0.9996421,0.0000544754,0.000095724135,0.00015448134,0.0000033900355,0.000049866023],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009265411,0.00016305741,0.00027716788,0.0001292052,0.00007503108,0.0000030351125,0.00009184473,0.0001934604,0.00022671335],"category_scores_gemma":[0.000009587576,0.00016084827,0.000036879337,0.0000658161,0.0005370207,0.000037383932,0.00004240672,0.00013008162,0.000011287256],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025990483,0.00011318566,0.22184691,0.000024474764,0.000022566865,9.861851e-7,0.00023451095,0.00000703382,0.7746942,0.002250808,0.00015381078,0.0006254984],"study_design_scores_gemma":[0.0012255609,0.0001763363,0.9302005,0.000019975098,0.00006953832,0.000104382576,0.00025966763,0.0000017006396,0.062399566,0.00040634713,0.0048958766,0.00024051135],"about_ca_topic_score_codex":0.0037320869,"about_ca_topic_score_gemma":0.0022300098,"teacher_disagreement_score":0.71229464,"about_ca_system_score_codex":0.00006621563,"about_ca_system_score_gemma":0.00003516836,"threshold_uncertainty_score":0.6559202},"labels":[],"label_agreement":null},{"id":"W2166618055","doi":"10.1128/aem.69.12.7343-7353.2003","title":"Concomitant Induction of Systemic Resistance to <i>Pseudomonas syringae</i> pv. <i>lachrymans</i> in Cucumber by <i>Trichoderma asperellum</i> (T-203) and Accumulation ofPhytoalexins","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":389,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"United States - Israel Binational Agricultural Research and Development Fund","keywords":"Pseudomonas syringae; Phenylalanine ammonia-lyase; Biology; Phenylpropanoid; Pseudomonas; Rhizobacteria; Microbiology; Systemic acquired resistance; Botany; Rhizosphere; Bacteria; Biochemistry; Phenylalanine; Enzyme; Gene; Biosynthesis; Pathogen","score_opus":0.010580426995542765,"score_gpt":0.19538504384868016,"score_spread":0.1848046168531374,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166618055","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977757,0.0008313095,0.000015209069,0.00008639817,0.00005647515,0.00028257622,0.00021806589,0.000010426834,0.0007238467],"genre_scores_gemma":[0.9986657,0.0005965534,0.00007532438,0.0002552153,0.0000146632865,0.00001995857,0.00018403091,0.0000020754178,0.0001865153],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99907345,0.00008556196,0.00029076653,0.0003040189,0.000033886245,0.00021229182],"domain_scores_gemma":[0.9996736,0.00010330029,0.00010374791,0.000060550978,0.0000040049736,0.00005479128],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001389151,0.00015783346,0.00023848162,0.000021602775,0.00010508638,0.0000137481575,0.00007675079,0.00013639097,0.0000439727],"category_scores_gemma":[0.0000053295357,0.00008922179,0.0000227646,0.00011144203,0.00011249412,0.00007129628,0.000054623477,0.00014689525,0.000011621497],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000050585717,0.00008782261,0.009860121,0.000010118083,0.000008582157,7.539984e-7,0.000118453376,0.000007350797,0.98811877,0.000084513966,0.00053834455,0.0011145902],"study_design_scores_gemma":[0.0014987219,0.0003317905,0.045314424,0.00014306759,0.000037481746,0.00039030437,0.003114563,0.000011564068,0.8597088,0.0002233338,0.08851801,0.00070794194],"about_ca_topic_score_codex":0.0001511918,"about_ca_topic_score_gemma":0.0002267672,"teacher_disagreement_score":0.12840997,"about_ca_system_score_codex":0.0000523558,"about_ca_system_score_gemma":0.000002671292,"threshold_uncertainty_score":0.36383587},"labels":[],"label_agreement":null},{"id":"W2166636165","doi":"10.1128/aem.02643-08","title":"Influence of <i>Pythium oligandrum</i> Biocontrol on Fungal and Oomycete Population Dynamics in the Rhizosphere","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Oomycete; Rhizosphere; Biology; Pathosystem; Pythium; Elicitor; Inoculation; Botany; Oospore; Population; Phycomycetes; Horticulture; Microbiology; Pathogen; Bacteria; Genetics","score_opus":0.0021987281296197525,"score_gpt":0.14513294771184448,"score_spread":0.14293421958222474,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166636165","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99895006,0.00019668665,1.7313542e-7,0.00031448758,0.0000066035154,0.00014317066,0.00016211804,0.0000039769043,0.00022269721],"genre_scores_gemma":[0.99897027,0.00020695526,0.000012179629,0.0006433649,0.00001518454,0.0000034888012,0.0001387788,3.6843213e-7,0.0000093896515],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99954337,0.000025131143,0.00011725375,0.00016219853,0.000025351794,0.00012671867],"domain_scores_gemma":[0.9998467,0.000055877204,0.00004821336,0.000030591415,7.0146507e-7,0.000017938417],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007544052,0.00008572085,0.000119179786,0.00000462752,0.00006366939,0.000006233769,0.00006883272,0.00007905197,0.000003978638],"category_scores_gemma":[0.0000011863772,0.000031047857,0.00001517211,0.00003708734,0.00007988033,0.000016701148,0.000015648313,0.000071319555,0.0000017304938],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004256599,0.000037861726,0.020811835,0.0000017164894,0.0000018960258,0.0000018317811,0.000017207472,0.000023994991,0.97001636,0.00079021935,0.0000068384643,0.008247686],"study_design_scores_gemma":[0.00020658455,0.00018229746,0.9952851,0.00000784863,0.000004849887,0.000034376582,0.00022596262,0.00002080775,0.0032322374,0.00031116002,0.00040188743,0.00008688266],"about_ca_topic_score_codex":0.000032411503,"about_ca_topic_score_gemma":0.00013255644,"teacher_disagreement_score":0.9744733,"about_ca_system_score_codex":0.000012969277,"about_ca_system_score_gemma":4.8141686e-7,"threshold_uncertainty_score":0.12660949},"labels":[],"label_agreement":null},{"id":"W2166806575","doi":"10.1128/aem.67.6.2404-2409.2001","title":"Hydrolysis of 4-Hydroxybenzoic Acid Esters (Parabens) and Their Aerobic Transformation into Phenol by the Resistant <i>Enterobacter cloacae</i> Strain EM","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Agriculture, Soil, Plant Science","field":"Agricultural and Biological Sciences","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Methylparaben; Propylparaben; Chemistry; Chromatography; Hydrolysis; Paraben; Phenol; Enterobacter cloacae; Organic chemistry; Preservative; Biochemistry; Escherichia coli; Enterobacteriaceae","score_opus":0.003854179263836963,"score_gpt":0.1442798645009558,"score_spread":0.14042568523711885,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166806575","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99837923,0.00043157925,0.000011868626,0.000455993,0.00002293708,0.00025216036,0.00028441363,0.000015349751,0.0001464934],"genre_scores_gemma":[0.99838305,0.00046201644,0.000021915685,0.00048328564,0.00002317715,0.00001642095,0.00057983375,0.0000012995121,0.000028992115],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990395,0.000054407476,0.00025248187,0.00033017836,0.000053228126,0.0002702329],"domain_scores_gemma":[0.99969035,0.00006788187,0.00011260279,0.000062884945,0.0000021003164,0.00006415655],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014640782,0.00020526089,0.00021680335,0.000008849969,0.00023585507,0.000026962596,0.00020756772,0.0001240126,0.000022213932],"category_scores_gemma":[9.568042e-7,0.00006897996,0.000048493348,0.000094952535,0.0003968139,0.00009165124,0.00007357848,0.00011522075,0.000008665013],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041220883,0.000045582252,0.0010343739,0.0000035402654,0.000017788981,4.1342113e-7,0.00085832627,0.0000028693541,0.98410153,0.00003820017,0.00010482735,0.013751321],"study_design_scores_gemma":[0.00222548,0.0014073428,0.15512106,0.000059548904,0.00016516061,0.0007531836,0.032395788,0.00015644889,0.75378513,0.0015982705,0.050760355,0.0015722419],"about_ca_topic_score_codex":0.000047434856,"about_ca_topic_score_gemma":0.00022371185,"teacher_disagreement_score":0.23031642,"about_ca_system_score_codex":0.000022741939,"about_ca_system_score_gemma":0.0000012248313,"threshold_uncertainty_score":0.2812921},"labels":[],"label_agreement":null},{"id":"W2166896309","doi":"10.1128/aem.06696-11","title":"Rapid Filtration Separation-Based Sample Preparation Method for Bacillus Spores in Powdery and Environmental Matrices","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Nucleic acid; Bacillus anthracis; DNA extraction; Sample preparation; Chromatography; Spore; Biology; Filtration (mathematics); Extraction (chemistry); Bacteria; Endospore; Bacillus (shape); Biotechnology; Microbiology; Polymerase chain reaction; Chemistry; Biochemistry; Mathematics; Genetics","score_opus":0.011999958809441628,"score_gpt":0.24206709953062833,"score_spread":0.2300671407211867,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166896309","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99115574,0.000717092,0.0069563943,0.000018025365,0.00003787175,0.00050649623,0.00044304863,0.000004487354,0.00016085184],"genre_scores_gemma":[0.9889413,0.0006122876,0.007054898,0.00014108978,0.00004965723,0.000101894446,0.0030514344,0.000013671983,0.000033783854],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991439,0.000044190438,0.00018861989,0.00038728,0.000027889775,0.0002081435],"domain_scores_gemma":[0.9997255,0.00004306098,0.00005889631,0.00012107664,0.0000016653886,0.000049751794],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017734607,0.0001462026,0.00014520287,0.000043626304,0.00008418223,0.000011938347,0.000058371163,0.00017909949,0.00010900952],"category_scores_gemma":[0.000006151189,0.00014028612,0.00003052942,0.000019372623,0.00015388016,0.000006694395,0.000051934458,0.000050066654,0.000003556118],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048061536,0.000080598795,0.0027067952,0.000012909358,0.000015590984,3.2306937e-7,0.00014024005,0.000011373837,0.98699427,0.00005208499,0.00006193819,0.009443282],"study_design_scores_gemma":[0.0025922114,0.0010715934,0.018457947,0.000005266865,0.00002904431,0.000025076775,0.0004339039,0.00083005516,0.9460305,0.00037615985,0.02970443,0.00044383458],"about_ca_topic_score_codex":0.00004167985,"about_ca_topic_score_gemma":0.00004093477,"teacher_disagreement_score":0.04096377,"about_ca_system_score_codex":0.00001906943,"about_ca_system_score_gemma":0.000012751234,"threshold_uncertainty_score":0.57207024},"labels":[],"label_agreement":null},{"id":"W2166899279","doi":"10.1128/aem.70.1.248-254.2004","title":"Generation and Utilization of Polyclonal Antibodies to a Synthetic C-Terminal Amino Acid Fragment of Divercin V41, a Class IIa Bacteriocin","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Polyclonal antibodies; Keyhole limpet hemocyanin; Antibody; Bacteriocin; Sepharose; Affinity chromatography; Molecular biology; Biochemistry; Trypsin; Biology; Chemistry; Bacteria; Enzyme","score_opus":0.01544123220595777,"score_gpt":0.19381757815014786,"score_spread":0.17837634594419008,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166899279","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992171,0.00020347202,0.000030291158,0.00013500512,0.00002883319,0.00016477286,0.00017354316,0.000004014592,0.00004297755],"genre_scores_gemma":[0.9991311,0.00026017692,0.00024647158,0.00010883401,0.00002107525,0.0000049934824,0.00021723792,8.8401976e-7,0.000009251906],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99945194,0.000014077184,0.00017037569,0.0002058755,0.00003089985,0.00012681479],"domain_scores_gemma":[0.9998483,0.000010018344,0.00006673767,0.000031356532,0.000002505931,0.000041047493],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000048635455,0.000102009195,0.00016051193,0.000013843833,0.00006713861,0.0000061745063,0.00005336631,0.000079578596,0.00004705942],"category_scores_gemma":[0.0000011542318,0.000050655603,0.00002210546,0.000034800076,0.00018035398,0.000019597674,0.00011402558,0.000035563895,0.000002657292],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031671512,0.0000895962,0.0027683715,0.000008892877,0.000011640652,4.815743e-7,0.00016464185,0.000004603261,0.9856823,0.00022628189,0.0000031890763,0.011008335],"study_design_scores_gemma":[0.0003815793,0.0006901346,0.20721792,0.000021648872,0.000027093512,0.00003476852,0.00034424328,0.000017077984,0.79044896,0.0001320298,0.00052389427,0.00016063287],"about_ca_topic_score_codex":0.000029165447,"about_ca_topic_score_gemma":0.00002370999,"teacher_disagreement_score":0.20444955,"about_ca_system_score_codex":0.000017441695,"about_ca_system_score_gemma":0.0000020077755,"threshold_uncertainty_score":0.20656756},"labels":[],"label_agreement":null},{"id":"W2167014093","doi":"10.1128/aem.01289-09","title":"Effect of Environmental Factors and Influence of Rumen and Hindgut Biogeography on Bacterial Communities in Steers","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"University of Manitoba","keywords":"Rumen; Biology; Firmicutes; Hindgut; Silage; Animal science; Feces; Population; Verrucomicrobia; Fermentation; Fodder; Bacteroidetes; Food science; Agronomy; Botany; Bacteria; Ecology","score_opus":0.0031118072574111157,"score_gpt":0.16202186928413084,"score_spread":0.15891006202671973,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167014093","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992928,0.000060007435,8.977783e-9,0.000018516032,0.000020179661,0.00016049949,0.00040544345,0.0000033618692,0.000039178693],"genre_scores_gemma":[0.99924153,0.0003746326,0.00000537932,0.00003145128,0.000008080887,0.00000554124,0.00033117743,9.221805e-7,0.0000013085967],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994765,0.00006603832,0.00014608726,0.00015779557,0.000021071393,0.00013250762],"domain_scores_gemma":[0.99958885,0.00026678076,0.000067725305,0.000037884598,5.5693215e-7,0.000038221428],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000077200064,0.00013235188,0.000236469,0.000025040468,0.00004931869,0.000003994493,0.00006313242,0.00011500147,0.00009042403],"category_scores_gemma":[0.0000020352045,0.000059611182,0.0000228308,0.000024761248,0.00097267126,0.000029265111,0.000099055476,0.000110530185,9.272573e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000117577634,0.000061625506,0.24759634,0.0000066813627,0.0000053553567,1.5999959e-7,0.000074042546,2.1193505e-7,0.74868643,0.000042581978,0.0000012259206,0.0034077845],"study_design_scores_gemma":[0.0004269522,0.00093546364,0.82077044,0.0000054212587,0.0000056689305,0.0000052858795,0.00044031176,3.1611788e-7,0.17685325,0.00003897874,0.00043258807,0.00008531799],"about_ca_topic_score_codex":0.00013158214,"about_ca_topic_score_gemma":0.00005338643,"teacher_disagreement_score":0.5731741,"about_ca_system_score_codex":0.0000038644457,"about_ca_system_score_gemma":4.1493504e-7,"threshold_uncertainty_score":0.3583848},"labels":[],"label_agreement":null},{"id":"W2167149952","doi":"10.1128/aem.72.4.3036-3041.2006","title":"Characterization of <i>Streptococcus thermophilus</i> Host Range Phage Mutants","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Streptococcus thermophilus; Mutant; Virulence; Biology; Phagemid; Phage display; Strain (injury); Bacteriophage; Microbiology; Gene; Host (biology); Genetics; Escherichia coli; Bacteria; Antibody; Lactobacillus","score_opus":0.002577825018319512,"score_gpt":0.16114683991943315,"score_spread":0.15856901490111364,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167149952","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99556303,0.000025482283,0.0000685125,0.00005134091,0.00007482412,0.00025810147,0.00029763614,0.000017863596,0.0036432086],"genre_scores_gemma":[0.9988218,0.00006202933,0.000077855875,0.00021449516,0.000041226118,0.000020146985,0.00034270732,0.00001638461,0.00040336695],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992139,0.000019384519,0.00023251718,0.00029036574,0.000032019616,0.00021182085],"domain_scores_gemma":[0.9996839,0.00001331121,0.00012309397,0.00014409627,6.640994e-7,0.00003490391],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00004495969,0.00015913065,0.00017881428,0.000022243406,0.00008674044,0.0000098303535,0.000106257874,0.00010016247,0.002330227],"category_scores_gemma":[4.4331404e-7,0.00014601422,0.000042134627,0.000048477268,0.00036307037,0.000077081095,0.00015940166,0.00008150609,0.00022189783],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018669205,0.00012520478,0.0052242577,0.000003792839,0.000008202891,0.000002396041,0.000060816736,0.0000021366584,0.99287343,0.000029436818,0.000082730505,0.0015689506],"study_design_scores_gemma":[0.0004574446,0.000041600033,0.37205765,0.000003946141,0.00001766659,0.000051539497,0.000038180657,0.0000032375033,0.6151966,0.000029840825,0.011938334,0.00016399643],"about_ca_topic_score_codex":0.00012391125,"about_ca_topic_score_gemma":0.000022297092,"teacher_disagreement_score":0.37767684,"about_ca_system_score_codex":0.000046291447,"about_ca_system_score_gemma":0.0000015409429,"threshold_uncertainty_score":0.99858177},"labels":[],"label_agreement":null},{"id":"W2167184017","doi":"10.1128/aem.00398-06","title":"Pleiotropic Role of Quorum-Sensing Autoinducer 2 in<i>Photorhabdus luminescens</i>","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect and Pesticide Research","field":"Agricultural and Biological Sciences","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centre National de la Recherche Scientifique; Institut national de la recherche scientifique","keywords":"Photorhabdus luminescens; Quorum sensing; Biology; Biofilm; Virulence; Photorhabdus; Microbiology; Autoinducer; Homoserine; Mutant; Bacteria; Biochemistry; Gene; Genetics","score_opus":0.0032302018667567274,"score_gpt":0.15335606808180355,"score_spread":0.1501258662150468,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167184017","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99730426,0.00031844224,3.2645596e-7,0.000060622544,0.000021262817,0.00012405372,0.000043083823,0.000008773203,0.0021191663],"genre_scores_gemma":[0.9995372,0.000046874156,0.000049558137,0.00006357748,0.00007502612,0.0000029937185,0.00017041984,0.000001104773,0.000053225653],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992982,0.0000261214,0.00017252218,0.00020380321,0.000035020264,0.00026432148],"domain_scores_gemma":[0.9998322,0.00006369564,0.000041416526,0.000034095403,0.0000018134897,0.000026793521],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000062250365,0.000103740145,0.00016383173,0.00001490726,0.000060181104,0.0000064259957,0.000070599286,0.00011625379,0.0002603109],"category_scores_gemma":[0.0000012354517,0.000048290633,0.00002777551,0.00006450382,0.00018404885,0.000015839927,0.000071119146,0.00009960984,0.000018027873],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016780887,0.000052169333,0.02914396,0.0000027016442,0.0000026157727,0.0000021023282,0.00002059473,0.0000017250628,0.96080977,0.00016404426,0.000030954583,0.009752594],"study_design_scores_gemma":[0.00033540453,0.00013232244,0.5506243,0.0000084705525,0.0000059143817,0.000045161043,0.00034537382,0.000025725856,0.4366099,0.0010324888,0.010635059,0.00019990877],"about_ca_topic_score_codex":0.00096983864,"about_ca_topic_score_gemma":0.00036273015,"teacher_disagreement_score":0.5241999,"about_ca_system_score_codex":0.000022903123,"about_ca_system_score_gemma":0.0000024416624,"threshold_uncertainty_score":0.28502217},"labels":[],"label_agreement":null},{"id":"W2167328080","doi":"10.1128/aem.70.10.5859-5867.2004","title":"Inheritance of Resistance to <i>Bacillus thuringiensis</i> subsp. <i>kurstaki</i> in <i>Trichoplusia ni</i>","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect Resistance and Genetics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"University of British Columbia","keywords":"Trichoplusia; Bacillus thuringiensis; Backcrossing; Biology; Population; Bacillaceae; Genetics; Botany; Larva; Noctuidae; Gene; Bacteria","score_opus":0.002906117225215799,"score_gpt":0.1722231205460758,"score_spread":0.16931700332086,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167328080","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99582237,0.0022924922,0.00013654015,0.000103230224,0.00007694612,0.00024822983,0.00009492818,0.0000056421954,0.0012196244],"genre_scores_gemma":[0.99646896,0.00091565726,0.0011063225,0.0010879798,0.00005484319,0.000026042377,0.00011439737,0.000021755703,0.00020402735],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988759,0.000017929462,0.0002722941,0.00045208837,0.000046089037,0.00033570782],"domain_scores_gemma":[0.9995665,0.0000065311456,0.00007341637,0.0002815355,0.0000050820986,0.00006693213],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000084864674,0.00019855698,0.00023376451,0.00005014814,0.00004886307,0.000005375251,0.00015556572,0.00017662389,0.0000045562456],"category_scores_gemma":[0.000004459972,0.00020613523,0.000039305563,0.000102016544,0.00021780693,0.0000026170194,0.00014595086,0.00009024945,0.000011233978],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018898904,0.00008489207,0.0021340663,0.000019503143,0.000013926266,0.000004570309,0.00016453874,0.00016371964,0.9964978,0.000118698095,0.0002792856,0.00032997626],"study_design_scores_gemma":[0.0013971765,0.0001927941,0.008204775,0.000021221162,0.000009525857,0.000023264218,0.00025663388,8.7130886e-8,0.947606,0.00023006227,0.041747347,0.00031106352],"about_ca_topic_score_codex":0.000012319144,"about_ca_topic_score_gemma":0.0003296329,"teacher_disagreement_score":0.048891786,"about_ca_system_score_codex":0.000042283667,"about_ca_system_score_gemma":0.000023879924,"threshold_uncertainty_score":0.84059507},"labels":[],"label_agreement":null},{"id":"W2167490520","doi":"10.1128/aem.69.2.1043-1050.2003","title":"Seasonal Changes in Fungal Production and Biomass on Standing Dead <i>Scirpus</i> <i>lacustris</i> Litter in a Northern Prairie Wetland","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Freshwater macroinvertebrate diversity and ecology","field":"Environmental Science","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Environment and Climate Change Canada","funders":"","keywords":"Scirpus; Biomass (ecology); Macrophyte; Wetland; Biology; Aquatic plant; Environmental science; Botany; Standing crop; Agronomy; Ecology","score_opus":0.006308865983576773,"score_gpt":0.16246420950842685,"score_spread":0.15615534352485008,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167490520","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984416,0.000069041664,0.0000033710332,0.00050673063,0.000081864775,0.00025960023,0.000059455266,0.000009655037,0.0005687059],"genre_scores_gemma":[0.9989273,0.00007218639,0.00004299178,0.00071122975,0.000015319165,0.000017338993,0.000049948205,0.000010277155,0.00015342899],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988619,0.000057146113,0.00013533879,0.0005180724,0.00004627881,0.00038124598],"domain_scores_gemma":[0.9997657,0.000024766548,0.00004577349,0.00009859929,3.92299e-7,0.00006479566],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019136148,0.00018394673,0.00018970169,0.00006360811,0.000104991625,0.000010386745,0.00006873131,0.0001507247,0.0002298717],"category_scores_gemma":[0.0000043161112,0.0001735389,0.00001390635,0.00006982672,0.00045114948,0.000066174034,0.00013229132,0.00017000748,0.00012585997],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000067593035,0.0000928648,0.617807,0.000006498037,0.0000054477864,0.000018395733,0.0001799328,0.00003157541,0.3808279,0.00002235227,0.00041416075,0.00052632013],"study_design_scores_gemma":[0.005187356,0.00086717337,0.65302134,0.000044448872,0.000040700572,0.0005208224,0.001845712,0.000077461285,0.2726399,0.0008312578,0.06364735,0.0012764339],"about_ca_topic_score_codex":0.00009454122,"about_ca_topic_score_gemma":0.017402915,"teacher_disagreement_score":0.108187996,"about_ca_system_score_codex":0.0001792362,"about_ca_system_score_gemma":0.0000042385454,"threshold_uncertainty_score":0.9711235},"labels":[],"label_agreement":null},{"id":"W2167540100","doi":"10.1128/aem.01269-06","title":"A 1,1,1-Trichloroethane-Degrading Anaerobic Mixed Microbial Culture Enhances Biotransformation of Mixtures of Chlorinated Ethenes and Ethanes","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":109,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Reductive dechlorination; Vinyl chloride; Dehalococcoides; Bioaugmentation; Enrichment culture; Bioremediation; Biotransformation; Chemistry; Desulfovibrio; Biodegradation; Microbial consortium; Environmental chemistry; Trichloroethylene; Microbiology; Propionate; Carbon monoxide dehydrogenase; Bacteria; Microorganism; Biochemistry; Biology; Organic chemistry; Enzyme; Carbon monoxide; Catalysis","score_opus":0.0033706416438358594,"score_gpt":0.16976099815921622,"score_spread":0.16639035651538037,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167540100","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986803,0.00036592316,0.00005834958,0.00004416413,0.00007448874,0.00025026267,0.00015358614,0.000015369333,0.0003575337],"genre_scores_gemma":[0.99807584,0.0006641735,0.0008452866,0.000058185393,0.000021783304,0.0000040205964,0.00025537438,0.000010211309,0.00006512853],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99897814,0.000041382464,0.00038134228,0.00030777004,0.000062250496,0.00022910854],"domain_scores_gemma":[0.9996086,0.000033302356,0.00021244957,0.000099611854,0.0000024403332,0.00004362005],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013427116,0.00021182583,0.0003004763,0.000057593723,0.00007291599,0.0000074940504,0.00010960445,0.00021749403,0.00022119882],"category_scores_gemma":[0.0000026706691,0.00017269442,0.000045066776,0.00011546995,0.0007474638,0.00007579482,0.000094294875,0.00009744105,0.000013847817],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006410855,0.0000830248,0.0040770173,0.000032829434,0.000015854052,5.075937e-7,0.00044701956,0.000021892183,0.9934775,0.00005496399,0.00022053675,0.0015047037],"study_design_scores_gemma":[0.00072298566,0.000092956114,0.016139727,0.0000109375405,0.000027009006,0.0000270896,0.00024387611,0.000011218835,0.9806925,0.00009894174,0.0017428462,0.00018993473],"about_ca_topic_score_codex":0.00025124731,"about_ca_topic_score_gemma":0.0000786938,"teacher_disagreement_score":0.012785064,"about_ca_system_score_codex":0.0000318751,"about_ca_system_score_gemma":0.0000032394332,"threshold_uncertainty_score":0.7042274},"labels":[],"label_agreement":null},{"id":"W2167585764","doi":"10.1128/aem.02377-13","title":"Regulation of Dual Glycolytic Pathways for Fructose Metabolism in Heterofermentative Lactobacillus panis PM1","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Public Health Agency of Canada; Ministry of Agriculture - Saskatchewan; University of Saskatchewan","keywords":"Fructose; Dihydroxyacetone phosphate; Biochemistry; DHAP; Glycolysis; Triosephosphate isomerase; Biology; Metabolism; Fermentation; Dihydroxyacetone; Metabolic pathway; Glyceraldehyde; Chemistry; Enzyme; Glycerol; Dehydrogenase","score_opus":0.009089792996705119,"score_gpt":0.16899047385328783,"score_spread":0.1599006808565827,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167585764","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987451,0.000102578364,0.0000059744643,0.000089790694,0.000041143772,0.000572769,0.0002880126,0.000007596766,0.00014707],"genre_scores_gemma":[0.99901015,0.000052857922,0.00018432189,0.00014422355,0.000027815666,0.000067241475,0.00048291538,0.0000014196278,0.000029078958],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992761,0.000023091245,0.00021843145,0.00024254866,0.000025704447,0.00021411317],"domain_scores_gemma":[0.9997791,0.00005899627,0.00008334736,0.000036210895,0.00000306077,0.000039295155],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006126852,0.00012617257,0.00020423993,0.000013468801,0.000057074627,0.000009048666,0.00006420161,0.00011467048,0.0002179859],"category_scores_gemma":[0.0000017070672,0.000059398328,0.000039966108,0.00004401242,0.00014983573,0.00004393758,0.00007418001,0.00005661844,0.000013207975],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003337092,0.00008725986,0.0008632094,0.0000047215217,0.000013892319,1.4899936e-7,0.00014413375,0.000002334318,0.988344,0.00075504713,0.00002414967,0.009727712],"study_design_scores_gemma":[0.0014446354,0.0005375471,0.6519883,0.000010355261,0.000027680358,0.000014977571,0.0019345647,0.00007496771,0.33535737,0.00667151,0.001599786,0.00033827894],"about_ca_topic_score_codex":0.000052128555,"about_ca_topic_score_gemma":0.000022643995,"teacher_disagreement_score":0.65298665,"about_ca_system_score_codex":0.000023713408,"about_ca_system_score_gemma":0.0000016032785,"threshold_uncertainty_score":0.24221934},"labels":[],"label_agreement":null},{"id":"W2167586370","doi":"10.1128/aem.01493-13","title":"Structure-Function Relationships in Hydrophobins: Probing the Role of Charged Side Chains","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Proteins in Food Systems","field":"Agricultural and Biological Sciences","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Helsingin Yliopisto","keywords":"Hydrophobin; Amino acid; Amphiphile; Fungal protein; Function (biology); Trichoderma reesei; Chemistry; Pulmonary surfactant; Biophysics; Mutagenesis; Green fluorescent protein; Biochemistry; Polymer; Biology; Saccharomyces cerevisiae; Mutation; Copolymer; Organic chemistry; Enzyme; Gene","score_opus":0.006957522528062426,"score_gpt":0.14493512924829038,"score_spread":0.13797760672022796,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167586370","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99846673,0.00033477668,0.0000019041208,0.000118414784,0.000033149,0.00051423965,0.000030835603,0.000010018786,0.00048993767],"genre_scores_gemma":[0.99966496,0.00002032815,0.000013467155,0.0000700302,0.000039648883,0.000064055654,0.000100664205,0.0000010566218,0.000025763256],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99935937,0.00007465603,0.00018888156,0.0001897053,0.000027953747,0.00015941904],"domain_scores_gemma":[0.99977815,0.000063337946,0.000084029794,0.000051617026,0.000001420151,0.00002143169],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010928769,0.00009586104,0.00012443674,0.000009906161,0.00012004516,0.0000083235145,0.00010420488,0.000111515685,0.00015135971],"category_scores_gemma":[0.0000026013051,0.000035428267,0.000020678432,0.00004804859,0.00013651914,0.0000357519,0.0000703648,0.00014611389,0.000042258907],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000074539503,0.000019405401,0.008141244,0.0000017280013,0.000005742725,6.192698e-8,0.00015235218,0.000005689209,0.9806415,0.00046479056,0.000004956035,0.010555065],"study_design_scores_gemma":[0.0006933584,0.0005182733,0.48666173,0.000026780179,0.000022318312,0.00006689526,0.009556034,0.00026434285,0.47692162,0.014018716,0.010716473,0.0005334541],"about_ca_topic_score_codex":0.00017314088,"about_ca_topic_score_gemma":0.00012333658,"teacher_disagreement_score":0.5037199,"about_ca_system_score_codex":0.000023674882,"about_ca_system_score_gemma":0.000001162924,"threshold_uncertainty_score":0.16572827},"labels":[],"label_agreement":null},{"id":"W2167803442","doi":"10.1128/aem.01261-08","title":"Metalloprotease Vsm Is the Major Determinant of Toxicity for Extracellular Products of<i>Vibrio splendidus</i>","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":92,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centre National de la Recherche Scientifique; Institut national de la recherche scientifique","keywords":"Biology; Mutant; Virulence; Metalloproteinase; Microbiology; Vibrio; Virulence factor; Extracellular; Gene; Bacteria; Genetics; Biochemistry; Enzyme","score_opus":0.00956324556081506,"score_gpt":0.2025047470855668,"score_spread":0.19294150152475173,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167803442","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99657416,0.0020975017,0.00013183092,0.00012474341,0.000028081213,0.00064025616,0.00036640183,0.0000021880558,0.000034861398],"genre_scores_gemma":[0.99758327,0.00078355346,0.00084504863,0.00009124856,0.000048286878,0.00008375944,0.00018744808,0.000013932212,0.00036342666],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991667,0.000029860086,0.00021492607,0.00032300927,0.000037302096,0.00022817648],"domain_scores_gemma":[0.999561,0.000019688652,0.00010968293,0.0002693497,0.000007918842,0.000032321175],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001240658,0.00014767007,0.00023094006,0.000018083432,0.00011225033,0.0000019363467,0.00014744769,0.00009667332,0.000015635884],"category_scores_gemma":[0.000014597032,0.00010466125,0.0000712353,0.00002414305,0.00081690756,0.0000021801984,0.00024317688,0.0000522261,0.0000021445553],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015124926,0.0000866259,0.00071458006,0.00005089521,0.00010913913,0.0000010382437,0.00011245676,5.0766454e-7,0.9979056,0.000021780117,0.00042170106,0.00042442526],"study_design_scores_gemma":[0.000571745,0.00027443183,0.0024960884,0.0000031376378,0.00003075983,0.000059671274,0.00008591136,0.0000013693735,0.9766501,0.000023186261,0.01969254,0.00011105727],"about_ca_topic_score_codex":0.000008081146,"about_ca_topic_score_gemma":0.0000026219739,"teacher_disagreement_score":0.021255499,"about_ca_system_score_codex":0.000007504427,"about_ca_system_score_gemma":0.00001952404,"threshold_uncertainty_score":0.4267962},"labels":[],"label_agreement":null},{"id":"W2167855385","doi":"10.1128/aem.71.11.6769-6775.2005","title":"Expression of Rumen Microbial Fibrolytic Enzyme Genes in Probiotic <i>Lactobacillus reuteri</i>","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolites in Food Biotechnology","field":"Nursing","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"McGill University","keywords":"Lactobacillus reuteri; Microbiology; Biology; Probiotic; Fibrobacter succinogenes; Xylan; Rumen; Biochemistry; Lactococcus lactis; Cellulase; Lactobacillus; Enzyme; Bacteria; Fermentation; Lactic acid","score_opus":0.004955262114613865,"score_gpt":0.1863078716969057,"score_spread":0.18135260958229185,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167855385","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99676204,0.001630778,0.000019594392,0.00045636643,0.00023930677,0.0005106242,0.00016200385,0.00004776217,0.00017151963],"genre_scores_gemma":[0.99544626,0.00018911662,0.003476964,0.00055147585,0.00009829048,0.000016531121,0.00014322538,0.00003662069,0.000041503692],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99823123,0.00007318381,0.00054691744,0.0005845435,0.000039958806,0.000524135],"domain_scores_gemma":[0.99933726,0.000048047965,0.0001883783,0.00036629871,0.0000026165562,0.000057412995],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00013507233,0.00031324854,0.0005004599,0.00018386016,0.00006654249,0.000009576255,0.00027365886,0.000503115,0.00012376097],"category_scores_gemma":[0.000005910807,0.00029842966,0.000061440034,0.00010571598,0.00064967433,0.00006514401,0.00034126264,0.00029429534,0.00007212719],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028008447,0.00021062796,0.0006397812,0.000043801534,0.000011828403,0.0000017421595,0.00026510513,0.000027605895,0.9846871,0.00005058031,0.0002299839,0.01355174],"study_design_scores_gemma":[0.0013997534,0.00020017658,0.0007212266,0.000034947432,0.00002291548,0.0001336701,0.00011364967,0.000007186989,0.95840114,0.000075606586,0.038602933,0.00028679127],"about_ca_topic_score_codex":0.000014934661,"about_ca_topic_score_gemma":0.000017273762,"teacher_disagreement_score":0.03837295,"about_ca_system_score_codex":0.0001269891,"about_ca_system_score_gemma":0.0000070104566,"threshold_uncertainty_score":0.9999468},"labels":[],"label_agreement":null},{"id":"W2167856010","doi":"10.1128/aem.66.6.2652-2657.2000","title":"Characterization of Metabolites during Biodegradation of Hexahydro-1,3,5-Trinitro-1,3,5-Triazine (RDX) with Municipal Anaerobic Sludge","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Toxic Organic Pollutants Impact","field":"Environmental Science","cited_by":220,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"","keywords":"Biodegradation; Chemistry; Methanol; Formic acid; Formaldehyde; Hydrolysis; Nitroso; Triazine; Hydroxymethyl; Organic chemistry; Nitroso Compounds; Anaerobic exercise","score_opus":0.003701037377599483,"score_gpt":0.16683408136553995,"score_spread":0.16313304398794048,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167856010","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99875927,0.00006458914,0.000015259395,0.000026945248,0.000019073712,0.0002524618,0.00043808995,0.000018359955,0.00040593895],"genre_scores_gemma":[0.99880457,0.00033341497,0.00044440047,0.00004775694,0.00001618429,0.0000061990454,0.00014785615,0.000022757507,0.00017687278],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99887556,0.000044197495,0.00035979846,0.0003439151,0.00008319961,0.00029331743],"domain_scores_gemma":[0.9994489,0.000022404387,0.00019220634,0.0002604444,3.8790498e-7,0.00007564553],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000095807285,0.00021696501,0.00034278128,0.000055013654,0.00006965343,0.0000048202114,0.00015728538,0.00011467125,0.0032335573],"category_scores_gemma":[0.000002178543,0.00018111922,0.00003550071,0.00015342564,0.0006164085,0.00012095357,0.00009823617,0.000097488344,0.00007381992],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015510412,0.000120781515,0.006008298,0.0000067837273,0.00003621651,0.0000010419182,0.00029043402,0.00002006629,0.98383194,0.000009086514,0.000001087646,0.009519157],"study_design_scores_gemma":[0.00091826863,0.000106120846,0.30112624,0.00000588188,0.000036691596,0.00004327178,0.00006316738,0.00001236727,0.697087,0.0000120112845,0.00043411448,0.00015484515],"about_ca_topic_score_codex":0.00004283655,"about_ca_topic_score_gemma":0.000010428706,"teacher_disagreement_score":0.29511794,"about_ca_system_score_codex":0.00006326834,"about_ca_system_score_gemma":0.0000045133784,"threshold_uncertainty_score":0.9976776},"labels":[],"label_agreement":null},{"id":"W2167964916","doi":"10.1128/aem.03024-09","title":"Construction of Aminoglycoside-Sensitive <i>Burkholderia cenocepacia</i> Strains for Use in Studies of Intracellular Bacteria with the Gentamicin Protection Assay","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":95,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research","keywords":"Gentamicin; Burkholderia cenocepacia; Microbiology; Aminoglycoside; Bacteria; Biology; Intracellular parasite; Intracellular; Burkholderia; Pseudomonas aeruginosa; Antibiotics; Biochemistry","score_opus":0.014039197056010887,"score_gpt":0.2321854792707452,"score_spread":0.2181462822147343,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167964916","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979711,0.000062413565,0.0006438817,0.00009617101,0.000040721665,0.0010280933,0.0001441487,0.000004104999,0.0000093686],"genre_scores_gemma":[0.9929048,0.00008025384,0.006802425,0.000026907295,0.000020906906,0.00005244998,0.000091258415,0.000009957258,0.000011088758],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99939716,0.00003089852,0.00018721315,0.00019438812,0.00003760708,0.0001527484],"domain_scores_gemma":[0.99961907,0.00012086565,0.000112658396,0.000112225745,0.000010945953,0.00002421868],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015971473,0.00010760659,0.00026954155,0.000047941197,0.00003929144,0.000002913734,0.000028474793,0.000073610056,0.000010084573],"category_scores_gemma":[0.000020638003,0.00007001424,0.000022312564,0.000041492938,0.0011882633,0.00003254548,0.000035477195,0.00015532221,5.604336e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00057159754,0.000071492526,0.0022850423,0.00007330596,0.00007469491,0.0000013219011,0.0003227533,0.0000030756933,0.99274766,0.000112077636,0.000008742083,0.003728252],"study_design_scores_gemma":[0.0015011429,0.00051619555,0.02693932,0.00002834995,0.000043796408,0.00014054246,0.0035618413,0.000020762758,0.9666333,0.000049468872,0.00049286295,0.00007239966],"about_ca_topic_score_codex":0.000028047412,"about_ca_topic_score_gemma":0.000114865594,"teacher_disagreement_score":0.026114326,"about_ca_system_score_codex":0.000031130738,"about_ca_system_score_gemma":0.00001214379,"threshold_uncertainty_score":0.43782055},"labels":[],"label_agreement":null},{"id":"W2168029912","doi":"10.1128/aem.69.4.2110-2115.2003","title":"P1 Trisaccharide (Galα1,4Galβ1,4GlcNAc) Synthesis by Enzyme Glycosylation Reactions Using Recombinant <i>Escherichia coli</i>","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Trisaccharide; Escherichia coli; Glycolipid; Galactosyltransferase; Biochemistry; Recombinant DNA; Glycosylation; Enzyme; Galactose; Oligosaccharide; Bacteria; Microbiology; Biology; Chemistry","score_opus":0.008213163133633739,"score_gpt":0.2097614541132233,"score_spread":0.20154829097958957,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168029912","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99627763,0.0013921859,0.0007091658,0.00005743757,0.00010978886,0.00032510902,0.00009082934,0.0000139959375,0.0010238733],"genre_scores_gemma":[0.9957176,0.0020615938,0.0012278382,0.000268189,0.000043110587,0.000098846394,0.00018562734,0.0000331594,0.00036407003],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99860305,0.00013563159,0.00025957284,0.000531375,0.000053972748,0.00041637375],"domain_scores_gemma":[0.99948794,0.000056485103,0.000105634965,0.00024554477,0.0000055482747,0.0000988391],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023481752,0.0002504609,0.000244388,0.000034508514,0.00028353874,0.00001814901,0.00011106496,0.00023288156,0.00007099767],"category_scores_gemma":[0.000047189646,0.00024486965,0.00006207502,0.000068507296,0.0002970844,0.000006506923,0.00013147814,0.00016506459,0.000017826555],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005843838,0.00013521637,0.0011924027,0.0000114975255,0.00008477913,0.0000010165453,0.000023650096,0.000013829019,0.99673235,0.00010161971,0.0012487724,0.0003964437],"study_design_scores_gemma":[0.0006427139,0.00013050465,0.0006373027,0.0000064899814,0.00004162622,0.000040052568,0.00023454758,0.00002791695,0.8288941,0.000069655536,0.16894612,0.00032899927],"about_ca_topic_score_codex":0.000051635114,"about_ca_topic_score_gemma":0.0000110599885,"teacher_disagreement_score":0.16783826,"about_ca_system_score_codex":0.0000688158,"about_ca_system_score_gemma":0.000030015073,"threshold_uncertainty_score":0.9985494},"labels":[],"label_agreement":null},{"id":"W2168104108","doi":"10.1128/aem.02772-10","title":"Generation of Multimillion-Sequence 16S rRNA Gene Libraries from Complex Microbial Communities by Assembling Paired-End Illumina Reads","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":788,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Wilfrid Laurier University; University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Pyrosequencing; Biology; Metagenomics; Genetics; Illumina dye sequencing; 16S ribosomal RNA; Computational biology; Ribosomal RNA; DNA sequencing; Gene; Genome; Sequence assembly; Deep sequencing; Sequence analysis; Transcriptome; Gene expression","score_opus":0.07193464806363736,"score_gpt":0.2100395760047354,"score_spread":0.13810492794109805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168104108","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99729866,0.0001660958,0.00020869682,0.00003697858,0.000103827886,0.00023121362,0.0008335436,0.000029121726,0.0010918559],"genre_scores_gemma":[0.98828995,0.00037877628,0.004764928,0.000695344,0.00003513819,0.000018043751,0.0057450132,0.000023462768,0.0000493299],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99859965,0.00025643123,0.0003980882,0.00034903004,0.000040046933,0.0003567261],"domain_scores_gemma":[0.99919087,0.00013034788,0.00020717045,0.00039464282,0.0000020131408,0.000074970805],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00014920233,0.00029008902,0.00039669694,0.000039952807,0.0004065872,0.000011222048,0.00042514413,0.00030643854,0.0071444325],"category_scores_gemma":[0.0000027068477,0.00029154393,0.00005792418,0.000055017757,0.0024491134,0.00013872875,0.00070033106,0.00029002078,0.000120193516],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008049242,0.0002093206,0.0077876034,0.000004868997,0.000045503984,0.0000014606444,0.0027381482,0.000020099706,0.9847446,0.00007814178,0.003024579,0.0012651979],"study_design_scores_gemma":[0.0010906617,0.0003139085,0.031556368,0.000008750788,0.00006276632,0.00005136979,0.0018885552,0.00019653158,0.95390916,0.00075104146,0.009557591,0.0006132885],"about_ca_topic_score_codex":0.003035001,"about_ca_topic_score_gemma":0.00062367436,"teacher_disagreement_score":0.030835416,"about_ca_system_score_codex":0.00006409167,"about_ca_system_score_gemma":0.0000072081843,"threshold_uncertainty_score":0.9999537},"labels":[],"label_agreement":null},{"id":"W2168301196","doi":"10.1128/aem.02769-10","title":"Saccharomyces cerevisiae Genome Shuffling through Recursive Population Mating Leads to Improved Tolerance to Spent Sulfite Liquor","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Concordia University","funders":"Natural Sciences and Engineering Research Council of Canada; FPInnovations","keywords":"Sulfite; Fermentation; Population; Saccharomyces cerevisiae; Yeast; Biology; DNA shuffling; Food science; Biochemistry; Chemistry; Directed evolution; Mutant; Gene","score_opus":0.009777916234907326,"score_gpt":0.1793329256999939,"score_spread":0.1695550094650866,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168301196","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99777174,0.0002775797,0.000681235,0.00009385009,0.00023011662,0.00042601328,0.00003472253,0.00007045608,0.00041430877],"genre_scores_gemma":[0.9922531,0.00015229666,0.0067669875,0.00051668234,0.000103444705,0.0000216789,0.000110047586,0.000021928,0.000053818854],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991935,0.000010364352,0.00019846816,0.00032877663,0.000022879905,0.00024599404],"domain_scores_gemma":[0.999751,0.000005907766,0.00003337046,0.0001355032,0.0000017915474,0.00007243626],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005672147,0.00017382986,0.00017658238,0.000042990643,0.00007952656,0.000010913227,0.000085994034,0.00010422271,0.00018915962],"category_scores_gemma":[0.0000011428455,0.00016803807,0.000027109292,0.00005250122,0.000035099038,0.000060479306,0.00008379647,0.00010139113,0.00020737143],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030368532,0.000015960688,0.00066344446,0.000036920763,0.000011756802,4.768443e-7,0.0012176079,0.00012679819,0.99545544,0.000035038644,0.00005698594,0.0023492188],"study_design_scores_gemma":[0.001063682,0.00042405276,0.06148692,0.00005901187,0.000051301344,0.00008071054,0.0021408163,0.0001684213,0.88566387,0.00026111794,0.047378395,0.0012216769],"about_ca_topic_score_codex":0.000031964697,"about_ca_topic_score_gemma":0.0000030376243,"teacher_disagreement_score":0.109791525,"about_ca_system_score_codex":0.000076310556,"about_ca_system_score_gemma":0.0000011076825,"threshold_uncertainty_score":0.6852393},"labels":[],"label_agreement":null},{"id":"W2168454395","doi":"10.1128/aem.67.3.1076-1084.2001","title":"Chromate Reduction by a Pseudomonad Isolated from a Site Contaminated with Chromated Copper Arsenate","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Chromium effects and bioremediation","field":"Environmental Science","cited_by":397,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Chromate conversion coating; Arsenate; Chemistry; Chromated copper arsenate; Anaerobic exercise; Nuclear chemistry; Copper; Metal; Chromium; Inorganic chemistry; Arsenic; Biology; Organic chemistry","score_opus":0.0017778239526781458,"score_gpt":0.15016128789918595,"score_spread":0.1483834639465078,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168454395","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998339,0.00011246103,0.000050163704,0.000116293275,0.00006168065,0.0004040922,0.00020151406,0.00007867887,0.000636097],"genre_scores_gemma":[0.99674445,0.00027198283,0.00011184326,0.00026036063,0.000033024957,0.000031879525,0.0023172635,0.000027431797,0.00020176804],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99873114,0.000045554596,0.00021362069,0.0005759926,0.00007212131,0.00036156253],"domain_scores_gemma":[0.999575,0.000024314662,0.000118086886,0.00017469672,0.0000010232457,0.000106871805],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007069921,0.00027611357,0.0002504967,0.000026653717,0.00015952396,0.000022841765,0.000090688765,0.0001914964,0.0012145746],"category_scores_gemma":[8.9477174e-7,0.00021698882,0.000026101676,0.00010953817,0.000502441,0.00010011695,0.0001153682,0.00012965588,0.00045454362],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021810096,0.00012197729,0.008262413,0.0000022324482,0.00003590282,0.000014133663,0.00021547751,0.000020514033,0.98736846,0.0000019304043,0.0016747599,0.0020640832],"study_design_scores_gemma":[0.011062799,0.0016140268,0.17226687,0.00004927792,0.00026708067,0.0014910266,0.0007938206,0.0022627222,0.7597877,0.00011975748,0.048298273,0.0019866943],"about_ca_topic_score_codex":0.00066406396,"about_ca_topic_score_gemma":0.00006770108,"teacher_disagreement_score":0.22758082,"about_ca_system_score_codex":0.00018019348,"about_ca_system_score_gemma":0.0000031231943,"threshold_uncertainty_score":0.99969846},"labels":[],"label_agreement":null},{"id":"W2168485389","doi":"10.1128/aem.72.4.2651-2660.2006","title":"The Locus Coding for the 3-Nitrobenzoate Dioxygenase of <i>Comamonas</i> sp. Strain JS46 Is Flanked by IS <i>1071</i> Elements and Is Subject to Deletion and Inversion Events","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Insertion sequence; Comamonas; Genetics; Biology; Locus (genetics); Dioxygenase; Plasmid; Direct repeat; Molecular biology; Gene; Transposable element; Bacteria; Pseudomonas","score_opus":0.0037070634305244026,"score_gpt":0.17404045553552994,"score_spread":0.17033339210500553,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168485389","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967032,0.0002976016,0.00009193987,0.0009140918,0.000042819927,0.0006666902,0.0012071506,0.0000066757775,0.0000698057],"genre_scores_gemma":[0.9954625,0.0009475486,0.00014560793,0.0030651235,0.000017232438,0.000016348315,0.00016647228,0.000012261213,0.00016694442],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989363,0.0000305442,0.00028096893,0.00037769452,0.00007643404,0.00029806484],"domain_scores_gemma":[0.99957925,0.000079009194,0.00012994352,0.00014152854,0.0000016697705,0.000068601745],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022724636,0.00019379979,0.00016495866,0.00001614972,0.00033721147,0.000019654648,0.0001347176,0.00010151963,0.00014787957],"category_scores_gemma":[0.0000020941359,0.00012853171,0.0000356645,0.000053187116,0.00035992058,0.000040103278,0.00022360332,0.000072861134,0.000025383013],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000806349,0.000037399313,0.011778953,0.0000066485027,0.000017449558,1.4930949e-7,0.0001926125,0.0000010252141,0.9654652,0.000007999464,0.017927686,0.0044842535],"study_design_scores_gemma":[0.002040306,0.00019626693,0.027935468,0.0000096896265,0.00005328076,0.000012480056,0.0005150034,0.00008703272,0.8571341,0.00025359128,0.11141574,0.00034703023],"about_ca_topic_score_codex":0.00013165237,"about_ca_topic_score_gemma":0.000057579044,"teacher_disagreement_score":0.10833107,"about_ca_system_score_codex":0.00005232763,"about_ca_system_score_gemma":0.000002472327,"threshold_uncertainty_score":0.5241371},"labels":[],"label_agreement":null},{"id":"W2168753812","doi":"10.1128/aem.01671-15","title":"Evolutionary Aspects of Emerging Lyme Disease in Canada","year":2015,"lang":"en","type":"review","venue":"Applied and Environmental Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; Université de Montréal; Public Health Agency of Canada","funders":"","keywords":"Borrelia burgdorferi; Lyme disease; Sensu stricto; Biology; Tick; Sensu; Wildlife; Disease; Public health; Virology; Zoology; Ecology; Immunology; Medicine","score_opus":0.008706161032867397,"score_gpt":0.2087067688956084,"score_spread":0.20000060786274101,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168753812","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.009050037,0.98808926,5.624306e-7,0.000006914053,0.00032448088,0.00051014713,0.0015152411,0.00001529447,0.00048806772],"genre_scores_gemma":[0.20887765,0.78772897,0.0000034436282,0.000041135452,0.000021930517,0.00008090702,0.003146559,0.00003468296,0.000064715045],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982564,0.00017283802,0.00056520884,0.0005521359,0.000022859462,0.0004305823],"domain_scores_gemma":[0.9992399,0.00010912138,0.00027850305,0.00029389284,0.0000034331295,0.00007513393],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00007795146,0.00043376547,0.0012861947,0.00015238448,0.000057685334,0.0000021628211,0.00020797734,0.0003015164,0.00037179736],"category_scores_gemma":[0.000008493634,0.0003956002,0.00012471357,0.00009215875,0.00038153827,0.000022079716,0.00026535336,0.00032761195,0.00011285358],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003162576,0.0015188435,0.013814075,0.0098722065,0.0026716741,0.00028530005,0.00024175608,0.00006190746,0.033339314,0.0028619256,0.010440565,0.92457616],"study_design_scores_gemma":[0.00066286925,0.000040924027,0.0013266647,0.00043125008,0.0004216213,0.0001693989,0.00009909276,2.3215436e-7,0.000048888076,0.00011035152,0.9962147,0.00047404895],"about_ca_topic_score_codex":0.07507998,"about_ca_topic_score_gemma":0.035601996,"teacher_disagreement_score":0.9857741,"about_ca_system_score_codex":0.0008891896,"about_ca_system_score_gemma":0.0011083724,"threshold_uncertainty_score":0.9998496},"labels":[],"label_agreement":null},{"id":"W2168936220","doi":"10.1128/aem.67.2.821-826.2001","title":"Purification, Stability, and Mineralization of 3-Hydroxy-2- Formylbenzothiophene, a Metabolite of Dibenzothiophene","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Department of Biotechnology, Ministry of Science and Technology, India","keywords":"Metabolite; Dibenzothiophene; Biodegradation; Benzothiophene; Chemistry; Mineralization (soil science); Bacteria; Toluene; Chromatography; Organic chemistry; Environmental chemistry; Biochemistry; Biology; Catalysis","score_opus":0.006407601559535211,"score_gpt":0.1747421454025892,"score_spread":0.168334543843054,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168936220","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99805677,0.00020664651,0.000117056195,0.000067263725,0.000027822043,0.00022677534,0.00011499569,0.000007984771,0.0011746584],"genre_scores_gemma":[0.99808854,0.0008469014,0.0006867384,0.00014480545,0.00000708675,0.0000047630438,0.00014988758,0.000008753996,0.00006255224],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99910754,0.000030793097,0.00034391638,0.0002932623,0.000057391193,0.00016708295],"domain_scores_gemma":[0.9995768,0.000025129308,0.00017829453,0.00015779326,0.0000022165204,0.000059746308],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001498992,0.0001403228,0.00023010498,0.000030849184,0.000045359164,0.0000043015034,0.00008942686,0.00011150086,0.0009104944],"category_scores_gemma":[0.000004891745,0.00012258449,0.000027796696,0.000093826646,0.0005717949,0.00006572681,0.00014424375,0.00004921625,0.00001615238],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003317859,0.000090385875,0.08449489,0.000011740199,0.000010334884,1.616901e-7,0.0002676325,0.0000055482847,0.9135123,0.0002874308,0.000033105338,0.0012532949],"study_design_scores_gemma":[0.000809293,0.000082496794,0.20462136,0.0000041223843,0.000032757187,0.000026564354,0.00022869626,0.00004519917,0.78794926,0.0003705965,0.005621811,0.00020786132],"about_ca_topic_score_codex":0.000082567734,"about_ca_topic_score_gemma":0.000033158623,"teacher_disagreement_score":0.12556306,"about_ca_system_score_codex":0.000025371792,"about_ca_system_score_gemma":0.000002970439,"threshold_uncertainty_score":0.99692756},"labels":[],"label_agreement":null},{"id":"W2169050290","doi":"10.1128/aem.69.11.6750-6757.2003","title":"Detection and Identification of <i>Lactobacillus</i> Species in Crops of Broilers of Different Ages by Using PCR-Denaturing Gradient Gel Electrophoresis and Amplified Ribosomal DNA Restriction Analysis","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":127,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; University of Alberta; North Carolina State University","keywords":"Temperature gradient gel electrophoresis; Biology; Ribosomal DNA; Gel electrophoresis; Species identification; Polymerase chain reaction; DNA; Ribosomal RNA; Lactobacillus; Identification (biology); Bacteria; 16S ribosomal RNA; Molecular biology; Microbiology; Genetics; Botany; Gene; Phylogenetics","score_opus":0.0060170806679516,"score_gpt":0.1597143794453096,"score_spread":0.15369729877735802,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169050290","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993063,0.00043077188,0.000024443665,0.000006991765,0.000014372948,0.000114144765,0.0000874138,0.0000023581688,0.000013180531],"genre_scores_gemma":[0.99849707,0.0013978246,0.000017505907,0.0000048072397,0.0000036818742,0.00000237512,0.00007169289,9.3299775e-7,0.0000040970494],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993163,0.000039466813,0.00027001702,0.00021833935,0.000033092325,0.00012280603],"domain_scores_gemma":[0.99972945,0.000033409047,0.00017377868,0.00003534355,0.0000029693542,0.000025032175],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007413579,0.00009983829,0.00022207387,0.00004653297,0.00005275567,0.0000060732414,0.000035214678,0.0000936115,0.0000054401307],"category_scores_gemma":[0.0000028771278,0.00005446809,0.000033246954,0.00013691485,0.00020642923,0.000021190395,0.00003517686,0.00005819737,4.3394067e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035805362,0.0000792408,0.038499497,0.000010500903,0.0000484691,9.019613e-8,0.000042813197,0.0000073577226,0.9601631,0.000068363915,5.506488e-7,0.0010442244],"study_design_scores_gemma":[0.00013717283,0.00009412,0.38500792,0.0000031707336,0.000053783235,0.0000026611146,0.00021744613,0.000017443263,0.61432457,0.00006888429,0.000015389216,0.00005743603],"about_ca_topic_score_codex":0.00009524612,"about_ca_topic_score_gemma":0.00007691799,"teacher_disagreement_score":0.3465084,"about_ca_system_score_codex":0.000027266215,"about_ca_system_score_gemma":7.3347456e-7,"threshold_uncertainty_score":0.22211443},"labels":[],"label_agreement":null},{"id":"W2169108184","doi":"10.1128/aem.01217-10","title":"Functional Characterization of pGKT2, a 182-Kilobase Plasmid Containing the <i>xplAB</i> Genes, Which Are Involved in the Degradation of Hexahydro-1,3,5-Trinitro-1,3,5-Triazine by <i>Gordonia</i> sp. Strain KTR9","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"U.S. Army Corps of Engineers; Genome British Columbia; Strategic Environmental Research and Development Program; U.S. Department of Health and Human Services; National Institutes of Health; National Institute of Allergy and Infectious Diseases","keywords":"Plasmid; Biology; Gene; Degradation (telecommunications); Genetics; Computational biology; Computer science","score_opus":0.006178240076862307,"score_gpt":0.16708447002666527,"score_spread":0.16090622994980297,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169108184","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997632,0.000036224552,0.000051078354,0.0005124545,0.00012585991,0.0004647678,0.0010417355,0.0000085916045,0.00012726133],"genre_scores_gemma":[0.996683,0.00016517931,0.00008593062,0.0008660872,0.00003450822,0.000019998273,0.002099627,0.000012224999,0.000033455326],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99869806,0.000108419415,0.00046053997,0.00034773734,0.00013422986,0.0002509996],"domain_scores_gemma":[0.99924076,0.000112162386,0.0003716032,0.00022396888,0.000004972155,0.000046540812],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047316228,0.00021182727,0.0002506907,0.000036032587,0.00011579924,0.000013723005,0.00024343428,0.00018611773,0.0004894898],"category_scores_gemma":[0.000014265006,0.00014270974,0.000037459544,0.00021221695,0.00053090206,0.000081099024,0.00013002838,0.00027135594,0.00003483405],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011682359,0.00017306226,0.055315934,0.0000067840856,0.000012293215,4.7498588e-7,0.00013914781,0.000010294442,0.9427936,0.000049155813,0.00037167274,0.0010107233],"study_design_scores_gemma":[0.0022427686,0.00014855721,0.2465178,0.00001080606,0.000038535065,0.000030858224,0.00096082845,0.00007467233,0.73613304,0.000036989502,0.013484077,0.00032104336],"about_ca_topic_score_codex":0.00007346609,"about_ca_topic_score_gemma":0.00040748555,"teacher_disagreement_score":0.20666057,"about_ca_system_score_codex":0.000040860657,"about_ca_system_score_gemma":0.000013220169,"threshold_uncertainty_score":0.58195347},"labels":[],"label_agreement":null},{"id":"W2169382051","doi":"10.1128/aem.03905-12","title":"Role of Nitrogen Limitation in Transformation of RDX (Hexahydro-1,3,5-Trinitro-1,3,5-Triazine) by Gordonia sp. Strain KTR9","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"U.S. Army Corps of Engineers; Strategic Environmental Research and Development Program","keywords":"Strain (injury); Nitrogen; Transformation (genetics); Transcriptome; Degradation (telecommunications); Microbiology; Mutant; Ammonium; Chemistry; Biology; Gene; Gene expression; Biochemistry; Organic chemistry","score_opus":0.003448133672443242,"score_gpt":0.16341439504480212,"score_spread":0.1599662613723589,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169382051","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99774736,0.0003841009,0.00004715556,0.000027862396,0.000027526963,0.00032317144,0.00029629582,0.0000066136204,0.0011399327],"genre_scores_gemma":[0.9982946,0.00033470575,0.0003822596,0.000058659385,0.00001954912,0.000012134116,0.00087477826,0.00001139579,0.000011942524],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99899095,0.000046842233,0.00041085735,0.0001972622,0.00006840825,0.00028565235],"domain_scores_gemma":[0.9996277,0.000036405563,0.00016903257,0.00010248612,9.894603e-7,0.00006339293],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023643227,0.00015848114,0.00023055806,0.00005089498,0.000032709504,0.0000030584627,0.00009710494,0.00015947768,0.0003835507],"category_scores_gemma":[0.000002588203,0.00014968887,0.000042031137,0.0000926223,0.00024955577,0.0001342072,0.00006259284,0.000095324685,0.000072408926],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038411657,0.00020405791,0.05778669,0.000015560134,0.000008884438,5.2641823e-8,0.0008779701,0.000026358139,0.9363697,0.00007314912,0.000073772986,0.004525361],"study_design_scores_gemma":[0.001339485,0.00012811815,0.08152568,0.000007648059,0.000031529842,0.000009809109,0.0010902286,0.00005560762,0.90860826,0.00047006816,0.006459129,0.0002744184],"about_ca_topic_score_codex":0.00009230329,"about_ca_topic_score_gemma":0.000022103966,"teacher_disagreement_score":0.02776146,"about_ca_system_score_codex":0.000077140656,"about_ca_system_score_gemma":0.0000029778041,"threshold_uncertainty_score":0.6104135},"labels":[],"label_agreement":null},{"id":"W2169629692","doi":"10.1128/aem.68.7.3449-3454.2002","title":"<i>tfdA</i> -Like Genes in 2,4-Dichlorophenoxyacetic Acid-Degrading Bacteria Belonging to the <i>Bradyrhizobium-Agromonas-Nitrobacter-Afipia</i> Cluster in α- <i>Proteobacteria</i>","year":2002,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Proteobacteria; Biology; Bradyrhizobium; Gene; Genetics; Microbiology; 16S ribosomal RNA; Rhizobium","score_opus":0.0051983267218182975,"score_gpt":0.16047658191268233,"score_spread":0.15527825519086402,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169629692","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99657685,0.00017730072,0.000017852439,0.0013361565,0.0002578694,0.00086755684,0.00010305354,0.00003064841,0.00063272665],"genre_scores_gemma":[0.99376047,0.00030693936,0.0005655258,0.004883266,0.0000674392,0.00006701992,0.0001138089,0.00003820618,0.00019735152],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99760926,0.0001278794,0.0005384861,0.0008205401,0.00010712935,0.0007966845],"domain_scores_gemma":[0.9992972,0.00005169884,0.0001221435,0.0003599092,0.0000012089819,0.00016781504],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00031907615,0.00042142827,0.00038706444,0.00009935524,0.00017520585,0.000058745612,0.00041830234,0.00022388395,0.0019957158],"category_scores_gemma":[0.000005587852,0.00033153308,0.000058064907,0.00029777904,0.00035230303,0.00013700227,0.0005767104,0.0003057871,0.0012704473],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049587485,0.00013513592,0.027768014,0.000006153678,0.000007396534,0.0000076052615,0.0007786251,0.000029031238,0.9660086,0.000006034151,0.0010879331,0.0041159033],"study_design_scores_gemma":[0.0057043345,0.00036801488,0.22208431,0.000079546444,0.00005075799,0.00034158412,0.00092275586,0.00026141744,0.5815428,0.00009598885,0.18627706,0.0022714534],"about_ca_topic_score_codex":0.00014632643,"about_ca_topic_score_gemma":0.00072641805,"teacher_disagreement_score":0.3844658,"about_ca_system_score_codex":0.00031092908,"about_ca_system_score_gemma":0.0000038775997,"threshold_uncertainty_score":0.9999137},"labels":[],"label_agreement":null},{"id":"W2169676921","doi":"10.1128/aem.67.10.4694-4700.2001","title":"Response of the Endophytic Diazotroph <i>Gluconacetobacter diazotrophicus</i> on Solid Media to Changes in Atmospheric Partial O <sub>2</sub> Pressure","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial metabolism and enzyme function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Cargill","keywords":"Nitrogenase; Diazotroph; Respiration; Nitrogen fixation; Chemistry; Nitrogen; Botany; Biology; Food science","score_opus":0.0032194600682865456,"score_gpt":0.16545550979740728,"score_spread":0.16223604972912073,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169676921","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985065,0.00042595557,0.000019360295,0.00027762554,0.00026761292,0.0003123834,0.0001580724,0.000005031596,0.000027500304],"genre_scores_gemma":[0.99744195,0.0007119429,0.00003652062,0.0014200695,0.00017198522,0.000054121443,0.00009294543,0.000022360067,0.00004809528],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989371,0.000117814365,0.00019369085,0.00040371664,0.000043171603,0.00030450698],"domain_scores_gemma":[0.9995303,0.00002952226,0.00007555728,0.00029569407,0.0000031409827,0.00006577383],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012484146,0.00020391449,0.00022818688,0.000018486271,0.000055619712,0.000004672082,0.00014576176,0.00019436685,0.000026023246],"category_scores_gemma":[0.000018926343,0.00015771239,0.000051042003,0.0000769817,0.00018654864,0.0000024989893,0.00019453837,0.00011366464,0.000022031732],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014398532,0.00009176683,0.0015307398,0.0000056682484,0.000025075327,0.000001829533,0.000090611604,0.00023579621,0.99453384,0.000012885241,0.0006140757,0.0014178678],"study_design_scores_gemma":[0.0007637399,0.00022363079,0.030067759,0.000008691453,0.000023208755,0.000028231008,0.000044567212,0.0000025514514,0.9242983,0.000010647128,0.044362485,0.00016619783],"about_ca_topic_score_codex":0.0000074130876,"about_ca_topic_score_gemma":0.000035120538,"teacher_disagreement_score":0.07023554,"about_ca_system_score_codex":0.000015246997,"about_ca_system_score_gemma":0.000011843151,"threshold_uncertainty_score":0.6431325},"labels":[],"label_agreement":null},{"id":"W2169743956","doi":"10.1128/aem.66.10.4200-4204.2000","title":"A Strain of <i>Enterococcus faecium</i> (18C23) Inhibits Adhesion of Enterotoxigenic <i>Escherichia coli</i> K88 to Porcine Small Intestine Mucus","year":2000,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":139,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; University of Manitoba","funders":"","keywords":"Mucus; Enterococcus faecium; Microbiology; Adhesion; Escherichia coli; Small intestine; Biology; Enterotoxigenic Escherichia coli; Chemistry; Biochemistry; Enterotoxin; Antibiotics","score_opus":0.006987276949737131,"score_gpt":0.1641244670942928,"score_spread":0.15713719014455566,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169743956","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99810195,0.00016821535,0.0000060466423,0.00015631541,0.000028908054,0.0004820199,0.0006101452,0.000015521138,0.00043089944],"genre_scores_gemma":[0.99844545,0.0001800173,0.00024374676,0.0006136071,0.000032514683,0.000020630312,0.00035601974,0.000002847441,0.00010514692],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99888,0.00003429366,0.0003903641,0.0003592766,0.00004433844,0.0002916974],"domain_scores_gemma":[0.99965703,0.000039425508,0.00011172655,0.00007829105,0.000004626573,0.000108921515],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000104062914,0.00020977434,0.00033218542,0.000017073879,0.00005844761,0.0000060021066,0.00018620801,0.00013482031,0.00050606456],"category_scores_gemma":[0.0000021776102,0.000104299084,0.00006903019,0.000111961774,0.00018581332,0.000018424435,0.00014563171,0.00011125934,0.000028047858],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001619711,0.00027473428,0.0020576676,0.000011865862,0.000020161035,0.0000010131262,0.00008524725,0.0000041577514,0.9722347,0.000022028571,0.00005373353,0.025072709],"study_design_scores_gemma":[0.0008258657,0.001727947,0.03484517,0.00004531218,0.000029572815,0.000024437677,0.0002643448,0.0000058895166,0.9537897,0.000082800565,0.008075257,0.00028369765],"about_ca_topic_score_codex":0.000031855634,"about_ca_topic_score_gemma":0.000038749888,"teacher_disagreement_score":0.0327875,"about_ca_system_score_codex":0.000018523406,"about_ca_system_score_gemma":0.000002823835,"threshold_uncertainty_score":0.55410516},"labels":[],"label_agreement":null},{"id":"W2170041113","doi":"10.1128/aem.00055-15","title":"Stable-Isotope Probing Identifies Uncultured Planctomycetes as Primary Degraders of a Complex Heteropolysaccharide in Soil","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":119,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Geological Survey of Canada; University of Calgary","funders":"","keywords":"Planctomycetes; Stable-isotope probing; Environmental chemistry; Soil microbiology; Stable isotope ratio; Primary (astronomy); Chemistry; Environmental science; Soil water; Biology; Bacteria; Soil science; Microorganism; Physics","score_opus":0.016279481378744454,"score_gpt":0.20388518584687665,"score_spread":0.18760570446813218,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170041113","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970219,0.00013143409,0.000007335295,0.00009831296,0.00007039407,0.0003059872,0.000048101305,0.000017152937,0.0022993633],"genre_scores_gemma":[0.99834555,0.000080421545,0.00021004636,0.0006714911,0.000011884937,0.000026675916,0.00046530875,0.0000136730105,0.00017492054],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987652,0.00013957822,0.00032421414,0.00035511822,0.000047598707,0.00036829704],"domain_scores_gemma":[0.9994929,0.0000693902,0.00012998808,0.0002214483,0.0000013311376,0.000084950785],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021774466,0.00021799786,0.00038696005,0.00005093331,0.00010357798,0.000007879224,0.00026435373,0.0001988528,0.0008309239],"category_scores_gemma":[0.000006316571,0.00020051413,0.000038287544,0.00008208669,0.001052613,0.00008395586,0.0005532152,0.0002504076,0.0001625789],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012855194,0.00015138304,0.020852514,0.000014851352,0.000021201473,0.0000037557086,0.0015015479,0.00027968126,0.97519344,0.00005411571,0.0015491879,0.0002497888],"study_design_scores_gemma":[0.012550329,0.001558187,0.2999049,0.0000849702,0.00015086385,0.0007132876,0.018051757,0.00013217266,0.5979039,0.014911511,0.051422585,0.0026155151],"about_ca_topic_score_codex":0.0006829324,"about_ca_topic_score_gemma":0.0007748622,"teacher_disagreement_score":0.3772895,"about_ca_system_score_codex":0.0001423699,"about_ca_system_score_gemma":0.0000120488385,"threshold_uncertainty_score":0.90980345},"labels":[],"label_agreement":null},{"id":"W2170642890","doi":"10.1128/aem.03564-13","title":"Discovery of Novel Rickettsiella spp. in Ixodid Ticks from Western Canada","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Biology; Clade; Genetics; Phylogenetic tree; Zoology; Evolutionary biology; Gene","score_opus":0.004317913392663535,"score_gpt":0.16288455933103024,"score_spread":0.1585666459383667,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170642890","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99727154,0.0011584442,0.000030415267,0.00005812025,0.00020145545,0.00026895458,0.0005932896,0.000011511159,0.00040627012],"genre_scores_gemma":[0.998331,0.00009318506,0.000023386048,0.0004648069,0.000016710592,0.000037156307,0.00073260866,0.000016339156,0.00028479384],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99896574,0.00004218297,0.00029797514,0.0003595815,0.000013675564,0.00032085727],"domain_scores_gemma":[0.9995412,0.0001279317,0.000103641985,0.00020184615,0.0000021914323,0.000023193827],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000327568,0.00020730172,0.00034175863,0.000047347003,0.00004538849,0.00000715887,0.00013541194,0.00019826047,0.0005562951],"category_scores_gemma":[0.000004036637,0.00018931582,0.00003548129,0.000035929115,0.00038217826,0.000055168024,0.00015888254,0.00017038509,0.00015003709],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026989637,0.0002060714,0.11638249,0.000005838822,0.00007852741,0.0000016600535,0.000063096755,0.0000061571945,0.8819573,0.000036260106,0.0007565578,0.000479057],"study_design_scores_gemma":[0.0031574913,0.000108173044,0.7030744,0.000018495104,0.00005585625,0.000076180186,0.0006959073,0.0000019989245,0.2854473,0.00010474436,0.006814289,0.000445152],"about_ca_topic_score_codex":0.23039833,"about_ca_topic_score_gemma":0.05956604,"teacher_disagreement_score":0.59651,"about_ca_system_score_codex":0.000096713266,"about_ca_system_score_gemma":0.000044018383,"threshold_uncertainty_score":0.95759445},"labels":[],"label_agreement":null},{"id":"W2170834436","doi":"10.1128/aem.01291-14","title":"Knockout of Extracytoplasmic Function Sigma Factor ECF-10 Affects Stress Resistance and Biofilm Formation in Pseudomonas putida KT2440","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Pseudomonas putida; Efflux; Sigma factor; Mutant; Biology; Gene knockout; Microbiology; Biofilm; Pseudomonas aeruginosa; Gene; rpoS; Strain (injury); Genetics; Cell biology; Gene expression; Bacteria; Promoter","score_opus":0.0031999076365181885,"score_gpt":0.16578093474207084,"score_spread":0.16258102710555264,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170834436","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99895126,0.0003716703,0.00010155609,0.000026066164,0.000057653036,0.00015351991,0.00009456071,0.000004540617,0.0002391781],"genre_scores_gemma":[0.9988093,0.0002487935,0.00020969399,0.00007469133,0.000046894136,0.000005365604,0.0005015481,0.000011457063,0.000092295864],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992909,0.000041992673,0.00017374134,0.00028853188,0.000021352365,0.00018350348],"domain_scores_gemma":[0.99971783,0.000017229639,0.00009698097,0.00012835779,0.0000021373703,0.000037468628],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006361112,0.00014763893,0.00017395975,0.000036614558,0.000049343093,0.000008604371,0.00004287628,0.000200057,0.000017946568],"category_scores_gemma":[0.0000034636046,0.00013928996,0.000024117755,0.000022286844,0.00016496006,0.0000069343196,0.00007846511,0.000060390183,0.0000032722576],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018535503,0.000031874475,0.0016339816,0.0000328747,0.0000111204345,3.4439782e-7,0.000033298264,0.000003717142,0.9936011,0.000061024828,0.00005022031,0.0043551098],"study_design_scores_gemma":[0.0008491542,0.00020130638,0.020634755,0.0000148538065,0.000010992985,0.00001558993,0.00009984891,0.000010529458,0.9713086,0.000022044798,0.006663252,0.00016906255],"about_ca_topic_score_codex":0.0000061268115,"about_ca_topic_score_gemma":0.0000737741,"teacher_disagreement_score":0.02229247,"about_ca_system_score_codex":0.000011678795,"about_ca_system_score_gemma":0.0000033411818,"threshold_uncertainty_score":0.56800795},"labels":[],"label_agreement":null},{"id":"W2170876859","doi":"10.1128/aem.02843-05","title":"Atypical <i>Helicobacter canadensis</i> Strains Associated with Swine","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; 16S ribosomal RNA; Feces; Microbiology; Ribosomal RNA; Typing; Gene; Helicobacter; Genetics; Helicobacter pylori","score_opus":0.0046999161179799385,"score_gpt":0.17273954197667787,"score_spread":0.16803962585869794,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170876859","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99734503,0.00011008966,0.000018296885,0.0011155588,0.000041128802,0.0002556334,0.0001446008,0.000049153216,0.00092050433],"genre_scores_gemma":[0.99590707,0.000028789385,0.00013075188,0.0023341451,0.00008271543,0.000020967216,0.0010251055,0.000026969732,0.00044347844],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998868,0.0000255637,0.00022579971,0.00038430872,0.0000454972,0.0004508169],"domain_scores_gemma":[0.99965584,0.000026658718,0.000066107656,0.00014970936,0.000005312075,0.00009635143],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005133988,0.00024128152,0.00037648072,0.000049233706,0.00010020191,0.000005608561,0.00004619916,0.00021038,0.00008430094],"category_scores_gemma":[0.0000033489687,0.00018652725,0.000034430275,0.000052508913,0.00058498664,0.000018972163,0.00007214122,0.00027038858,0.000040908217],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023728075,0.00024005157,0.30045304,0.000005535923,0.0003216474,0.00006082297,0.000054720782,0.0000020396956,0.6960543,0.00005782437,0.0021905252,0.00032221214],"study_design_scores_gemma":[0.0033008917,0.00047954512,0.98246896,0.000017608269,0.00020643094,0.00050786196,0.000112915295,0.0000021695646,0.0044947774,0.000022351438,0.0081942445,0.00019224148],"about_ca_topic_score_codex":0.00006836136,"about_ca_topic_score_gemma":0.0003225909,"teacher_disagreement_score":0.69155955,"about_ca_system_score_codex":0.00011370655,"about_ca_system_score_gemma":0.000013342094,"threshold_uncertainty_score":0.76063603},"labels":[],"label_agreement":null},{"id":"W2170944238","doi":"10.1128/aem.07759-11","title":"Effect of Phenotypic Residual Feed Intake and Dietary Forage Content on the Rumen Microbial Community of Beef Cattle","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":315,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Rumen; Biology; Fibrobacter succinogenes; Prevotella; Temperature gradient gel electrophoresis; Ruminococcus; Forage; Population; Animal science; Beef cattle; Microbial population biology; Animal feed; Food science; Fermentation; Agronomy; Microbiology; Bacteria; Feces","score_opus":0.019538503621167467,"score_gpt":0.19525491083208318,"score_spread":0.17571640721091572,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170944238","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987744,0.00023517953,1.3271145e-7,0.00021102738,0.000032168853,0.0002319727,0.00026005055,0.000004738819,0.00025029972],"genre_scores_gemma":[0.9993401,0.00008955341,0.0000060788393,0.00022620936,0.000034935052,0.000011821333,0.00027390715,0.0000010282471,0.00001633153],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99930763,0.00023554644,0.00014771055,0.00011105269,0.000020757392,0.00017732667],"domain_scores_gemma":[0.9992971,0.00052539544,0.000083291074,0.00005346717,0.0000018347129,0.000038904436],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024191882,0.00011831366,0.00022706433,0.0000072002604,0.0001472951,0.0000024937892,0.000094023984,0.00008355191,0.000075700176],"category_scores_gemma":[0.000006326509,0.000043328622,0.000033582935,0.000024791885,0.00060539425,0.000019201056,0.00013832844,0.00013050038,0.000006252916],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027277527,0.00017413925,0.007980954,0.000012436925,0.000016977696,5.8722044e-8,0.00013725649,1.2553745e-7,0.9848333,0.0002537976,0.0001294985,0.006188692],"study_design_scores_gemma":[0.00040632242,0.0012675255,0.51507944,0.0000075178796,0.000018997775,0.000009874633,0.00071480713,1.5746461e-7,0.4815955,0.00007911181,0.00073361263,0.000087165135],"about_ca_topic_score_codex":0.00011955354,"about_ca_topic_score_gemma":0.000015401793,"teacher_disagreement_score":0.50709844,"about_ca_system_score_codex":0.000008671653,"about_ca_system_score_gemma":6.687762e-7,"threshold_uncertainty_score":0.22306004},"labels":[],"label_agreement":null},{"id":"W2171028878","doi":"10.1128/aem.02286-07","title":"Taxonomic and Strain-Specific Identification of the Probiotic Strain <i>Lactobacillus rhamnosus</i> 35 within the <i>Lactobacillus casei</i> Group","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"World Congress of Science and Factual Producers","keywords":"Lactobacillus rhamnosus; Lactobacillus casei; Probiotic; Biology; Microbiology; Lactobacillus paracasei; Strain (injury); Bacteria; Genetics","score_opus":0.01063662484312308,"score_gpt":0.1544666730246666,"score_spread":0.14383004818154352,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171028878","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973016,0.00038249808,0.000009188977,0.00040503108,0.00011613852,0.00056851294,0.0010336586,0.000014447955,0.00016895837],"genre_scores_gemma":[0.9987611,0.0005013826,0.00003265764,0.00031947548,0.00005273977,0.000017813314,0.00025149545,0.0000027474139,0.000060599905],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988365,0.000070928436,0.00037445236,0.0004021173,0.000052521755,0.0002634339],"domain_scores_gemma":[0.9994929,0.000074240656,0.0002331871,0.00013845028,0.000003303689,0.00005792611],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002001598,0.00021571183,0.00021364323,0.00000924761,0.0004511236,0.000023362036,0.0002611033,0.00015650048,0.00003368836],"category_scores_gemma":[0.0000023295156,0.00007904119,0.00006598895,0.00008778066,0.0011616497,0.00004024983,0.00020785592,0.00020299494,0.000008789757],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025445534,0.0000844637,0.0016513069,0.000005130705,0.000021818221,0.0000010274955,0.00017281789,0.000004553282,0.9932445,0.0010246459,0.000096446056,0.0036678088],"study_design_scores_gemma":[0.0024141902,0.0009688241,0.66745836,0.000046303936,0.00013804954,0.0017182687,0.0059191515,0.00006477224,0.276812,0.0018021951,0.0413048,0.0013530826],"about_ca_topic_score_codex":0.000025610205,"about_ca_topic_score_gemma":0.000047080113,"teacher_disagreement_score":0.7164325,"about_ca_system_score_codex":0.000036439782,"about_ca_system_score_gemma":0.0000049965915,"threshold_uncertainty_score":0.42801467},"labels":[],"label_agreement":null},{"id":"W2171259602","doi":"10.1128/aem.02037-13","title":"Assessment of Giardia and Cryptosporidium spp. as a Microbial Source Tracking Tool for Surface Water: Application in a Mixed-Use Watershed","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Waterloo; BC Centre for Disease Control; Natural Sciences and Engineering Research Council of Canada; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Cryptosporidium; Giardia; Watershed; Surface water; Biology; Environmental science; Source tracking; Microbiology; Environmental engineering; Feces; Computer science; World Wide Web","score_opus":0.0042911025984189695,"score_gpt":0.20492128437670973,"score_spread":0.20063018177829076,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171259602","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9930064,0.000086808745,0.0059871455,0.000045297536,0.00012465326,0.00054717297,0.00010108042,0.000016973077,0.000084443425],"genre_scores_gemma":[0.9979147,0.0000883952,0.0007218145,0.00013437806,0.000018822502,0.00005730857,0.0009491215,0.000017854525,0.000097611744],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988803,0.00006353959,0.00032092573,0.00038110092,0.000010684672,0.0003434055],"domain_scores_gemma":[0.99948364,0.00024441554,0.0000845171,0.00016113282,0.0000057137095,0.000020573256],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002622663,0.00019523223,0.00034894308,0.00005927505,0.00011989855,0.000011883426,0.00006723092,0.00027513766,0.000044787805],"category_scores_gemma":[0.000009605839,0.00016546705,0.000045828234,0.000024438923,0.00035307818,0.000044008535,0.000092754235,0.00014347781,0.000044212164],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000068928835,0.00015115291,0.034877606,0.000026393802,0.00004658758,2.7977708e-7,0.00017971752,0.00010814461,0.9621216,0.0007425319,0.00007266528,0.001604363],"study_design_scores_gemma":[0.0037203485,0.0003110236,0.08755859,0.000014756907,0.000087156586,0.00014633893,0.0002720541,0.000057749956,0.86915314,0.0003274753,0.037979323,0.0003720148],"about_ca_topic_score_codex":0.00009755699,"about_ca_topic_score_gemma":0.000015256789,"teacher_disagreement_score":0.092968464,"about_ca_system_score_codex":0.000041372532,"about_ca_system_score_gemma":0.000008551631,"threshold_uncertainty_score":0.67475504},"labels":[],"label_agreement":null},{"id":"W2171262382","doi":"10.1128/aem.05822-11","title":"Beta Hydroxylation of Glycolipids from Ustilago maydis and Pseudozyma flocculosa by an NADPH-Dependent β-Hydroxylase","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Deutsche Forschungsgemeinschaft","keywords":"Ustilago; Biochemistry; Mutant; Biology; Fatty acid; Hydroxylation; Gene; Gene cluster; Enzyme","score_opus":0.009587473987583353,"score_gpt":0.16799690998209743,"score_spread":0.15840943599451407,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171262382","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975948,0.00018197918,0.0000058187106,0.000031362328,0.000057970115,0.0001415699,0.0016010901,0.00001449101,0.00037091717],"genre_scores_gemma":[0.99765056,0.0002803816,0.00009561814,0.000120487064,0.000034299803,0.000008535069,0.0017551599,0.0000016910026,0.000053251773],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992331,0.00004761188,0.00020784423,0.00030048093,0.000028692126,0.00018224887],"domain_scores_gemma":[0.99970394,0.000048341506,0.00009628836,0.000071284245,0.0000022560296,0.00007786395],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006479565,0.00015650298,0.00019515988,0.000011158599,0.00013672616,0.000011736877,0.00012089678,0.00012466397,0.0007682847],"category_scores_gemma":[0.0000010284455,0.00007951946,0.00002824581,0.00002812885,0.0002166152,0.00009232553,0.00012796008,0.000112359114,0.00002062182],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000719716,0.00019144978,0.0045500705,0.0000019791596,0.00002205071,9.4339146e-7,0.00014703674,3.4908084e-7,0.9850368,0.000019977679,0.0001218577,0.009835527],"study_design_scores_gemma":[0.0005783329,0.00053004106,0.11433858,0.000010202465,0.000055069027,0.0000950736,0.0014045266,0.000038690563,0.8746444,0.00035846193,0.007579941,0.00036670652],"about_ca_topic_score_codex":0.0015931453,"about_ca_topic_score_gemma":0.00021023971,"teacher_disagreement_score":0.11039241,"about_ca_system_score_codex":0.000016927263,"about_ca_system_score_gemma":0.0000014083527,"threshold_uncertainty_score":0.84121794},"labels":[],"label_agreement":null},{"id":"W2171373799","doi":"10.1128/aem.02791-05","title":"Prevalence of <i>Escherichia coli</i> O157 in Saskatchewan Cattle: Characterization of Isolates by Using Random Amplified Polymorphic DNA PCR, Antibiotic Resistance Profiles, and Pathogenicity Determinants","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Beef Cattle Research Council","keywords":"Biology; Escherichia coli; Antibiotic resistance; Genetics; Microbiology; DNA; Antibiotics; Polymerase chain reaction; Enterobacteriaceae; DNA profiling; Gene","score_opus":0.00450520251974002,"score_gpt":0.1926688933932224,"score_spread":0.1881636908734824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171373799","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972409,0.0018649806,0.000084090294,0.0000091118245,0.000012323497,0.00036512077,0.00040633738,0.0000025829152,0.000014554809],"genre_scores_gemma":[0.9983104,0.0010618565,0.00023781376,0.000036587553,0.000014597457,0.00001179402,0.00021928745,0.000014358437,0.00009332134],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902374,0.00007018421,0.00029594943,0.00034853368,0.000034560155,0.00022701312],"domain_scores_gemma":[0.9996349,0.000019510115,0.00016992328,0.00014118585,0.0000057672405,0.00002868072],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012672944,0.00016377323,0.0002753559,0.000028410692,0.000052253763,0.0000043841237,0.00008555288,0.00014495487,0.0000032076266],"category_scores_gemma":[0.0000054884786,0.00015927854,0.000024924087,0.000051420386,0.0005143269,0.000005095354,0.00014243193,0.00006839966,2.2501717e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023225004,0.000099249264,0.10186339,0.00016140651,0.000016152107,4.443604e-7,0.000050394934,0.0000013691223,0.8974367,0.0000019887748,0.0000076165757,0.00012903697],"study_design_scores_gemma":[0.0010268652,0.000079114274,0.13876599,0.000027619795,0.00001821754,0.0000043046075,0.00009434568,0.000015180907,0.85975534,0.000006887258,0.000067651876,0.00013846056],"about_ca_topic_score_codex":0.00007604155,"about_ca_topic_score_gemma":0.000065584434,"teacher_disagreement_score":0.037681334,"about_ca_system_score_codex":0.000015014638,"about_ca_system_score_gemma":0.000021759282,"threshold_uncertainty_score":0.649519},"labels":[],"label_agreement":null},{"id":"W2171374496","doi":"10.1128/aem.02761-08","title":"Single Nucleotide Polymorphism-Based Diagnostic System for Crop-Associated <i>Sclerotinia</i> Species","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant pathogens and resistance mechanisms","field":"Agricultural and Biological Sciences","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Genetics; Single-nucleotide polymorphism; Polymorphism (computer science); Sclerotinia; Crop; Genotype; Biotechnology; Agronomy; Gene","score_opus":0.00814409566228722,"score_gpt":0.14799542310949723,"score_spread":0.13985132744721002,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171374496","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99735135,0.00021617002,0.000026983442,0.0002969736,0.000110269815,0.000359281,0.0011944332,0.000063123174,0.00038143192],"genre_scores_gemma":[0.9979377,0.00003692555,0.00010740282,0.00070794794,0.00011215618,0.000022294998,0.0009701752,0.0000018416603,0.00010355749],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99908614,0.000024982108,0.0001819454,0.00032984788,0.000036580142,0.0003405124],"domain_scores_gemma":[0.99958104,0.00021107531,0.00009177876,0.000042821466,0.000002548462,0.00007071936],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008218394,0.00017936308,0.0002335031,0.000009168242,0.00024890192,0.000024386061,0.00011245408,0.00013993274,0.00004754567],"category_scores_gemma":[0.000005770476,0.000081816914,0.0000693853,0.000045034558,0.00009851638,0.000017415616,0.000024730616,0.000057168745,0.00001860144],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035240882,0.00014444883,0.00026533098,0.0000041645585,0.000008073392,0.0000039446954,0.000009114723,0.0000027763697,0.9949885,0.00023371406,0.00019638138,0.0041083116],"study_design_scores_gemma":[0.0015351423,0.0013995726,0.07632481,0.000070205526,0.000079346675,0.000047557904,0.00070092565,0.000033766126,0.8727648,0.0002592402,0.046016376,0.0007682348],"about_ca_topic_score_codex":0.000005367942,"about_ca_topic_score_gemma":0.000032376232,"teacher_disagreement_score":0.12222368,"about_ca_system_score_codex":0.000052950516,"about_ca_system_score_gemma":0.0000018536966,"threshold_uncertainty_score":0.33363968},"labels":[],"label_agreement":null},{"id":"W2171486516","doi":"10.1128/aem.01036-12","title":"Genetic Diversity among Bacillus anthracis Soil Isolates at Fine Geographic Scales","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Defence Research and Development Canada","funders":"U.S. Army Medical Research Institute of Infectious Diseases; Army Research Institute for the Behavioral and Social Sciences; Defence Research and Development Canada","keywords":"Multiple Loci VNTR Analysis; Bacillus anthracis; Biology; Variable number tandem repeat; Typing; Genetic diversity; Outbreak; National park; Genotype; Multilocus sequence typing; Population; Veterinary medicine; Microbiology; Genetics; Ecology; Virology; Bacteria; Gene","score_opus":0.004771803505914986,"score_gpt":0.17710361685976533,"score_spread":0.17233181335385034,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171486516","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996866,0.0023374388,0.00005306098,0.000019782497,0.000107462074,0.00016224732,0.00015030868,0.000008322829,0.00029536797],"genre_scores_gemma":[0.99751073,0.0014442013,0.00009943666,0.000098542165,0.00016696779,0.000013419082,0.00042321414,0.000017624436,0.00022588004],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99892575,0.000035327663,0.0001448214,0.00035815858,0.000037939568,0.00049799116],"domain_scores_gemma":[0.99955976,0.000012232895,0.00004876153,0.00021219776,0.0000031581499,0.0001639132],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010480087,0.00019841582,0.00017735176,0.000035252167,0.00035122252,0.000009255528,0.00013879326,0.00024660732,0.00021807774],"category_scores_gemma":[0.0000031148509,0.0001803495,0.0000663861,0.000030147998,0.0007380742,0.000004641673,0.0010829583,0.00009170073,0.000074220356],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006659777,0.000057298043,0.28490525,0.0000066253438,0.00003526275,6.4883346e-7,0.000042357133,0.0000020099553,0.71184766,0.000003821669,0.00014203426,0.0028904313],"study_design_scores_gemma":[0.0010639832,0.00023004567,0.6972241,0.0000033461745,0.000034658682,0.000091520786,0.00009364232,0.000007911529,0.28019804,0.00002815163,0.020564951,0.00045965004],"about_ca_topic_score_codex":0.00003906616,"about_ca_topic_score_gemma":0.00005865781,"teacher_disagreement_score":0.43164963,"about_ca_system_score_codex":0.000021652373,"about_ca_system_score_gemma":0.0000032632543,"threshold_uncertainty_score":0.7354439},"labels":[],"label_agreement":null},{"id":"W2171621990","doi":"10.1128/aem.69.8.4566-4574.2003","title":"Rapid Identification of<i>Candida</i>Species by Using Nuclear Magnetic Resonance Spectroscopy and a Statistical Classification Strategy","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fermentation and Sensory Analysis","field":"Agricultural and Biological Sciences","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Institute for Biodiagnostics","funders":"National Medical Research Council; National Health and Medical Research Council","keywords":"Nuclear magnetic resonance spectroscopy; Candida tropicalis; Biology; Candida glabrata; Yeast; Proton NMR; Nuclear magnetic resonance; Candida parapsilosis; Two-dimensional nuclear magnetic resonance spectroscopy; Chemotaxonomy; NMR spectra database; Candida albicans; Computational biology; Microbiology; Biochemistry; Spectral line; Botany; Taxonomy (biology); Physics","score_opus":0.01200866762222876,"score_gpt":0.18857600008153638,"score_spread":0.1765673324593076,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171621990","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985736,0.0007599917,0.000018165974,0.000038782728,0.000011212377,0.00009650066,0.00021389703,0.0000064071282,0.00028143037],"genre_scores_gemma":[0.9985916,0.0008170909,0.00019761949,0.00008452014,0.000007896815,0.0000029776377,0.00022299383,0.0000010901949,0.00007419572],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993784,0.00004516675,0.0001923189,0.00023391863,0.000031472733,0.0001187563],"domain_scores_gemma":[0.99981517,0.000040658128,0.00007187458,0.000033458025,0.0000020099098,0.00003682331],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007194266,0.00008760108,0.00012556254,0.000008673258,0.00011793606,0.000017828736,0.00003765045,0.000059908372,0.0005506355],"category_scores_gemma":[0.0000025747775,0.000047348647,0.000015537686,0.000047766596,0.0003162482,0.000026848249,0.000013783959,0.00004535569,0.0000072076828],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016429723,0.00004252033,0.001328066,0.000002329903,0.0000046073324,1.8914761e-7,0.000036136957,5.0561323e-7,0.98830235,0.002292122,0.00007350162,0.007901216],"study_design_scores_gemma":[0.0009872278,0.0006443566,0.39732075,0.000007868068,0.00012455048,0.000069867085,0.007724695,0.0004616205,0.5330619,0.0011965365,0.057804093,0.0005965026],"about_ca_topic_score_codex":0.000013079999,"about_ca_topic_score_gemma":0.0000046171594,"teacher_disagreement_score":0.45524043,"about_ca_system_score_codex":0.000016007869,"about_ca_system_score_gemma":0.0000013121501,"threshold_uncertainty_score":0.60290724},"labels":[],"label_agreement":null},{"id":"W2171662176","doi":"10.1128/aem.00436-09","title":"Improved Detection of F-Specific RNA Coliphages in Fecal Material by Extraction and Polyethylene Glycol Precipitation","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Coliphage; RNA; Feces; Biology; Fecal coliform; Polyethylene glycol; Bacteriophage; Microbiology; Food science; Chromatography; Escherichia coli; Chemistry; Ecology; Biochemistry","score_opus":0.005034781682624427,"score_gpt":0.2284958284403326,"score_spread":0.22346104675770817,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171662176","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998746,0.00040094848,0.0001984344,0.00017321347,0.000044110784,0.00032959637,0.000058054702,0.000007414374,0.000042258795],"genre_scores_gemma":[0.99793303,0.001385232,0.00022929179,0.00013401361,0.000039974522,0.000018840627,0.0002303,0.0000058818678,0.000023411658],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992929,0.000047650043,0.00021537273,0.00022088557,0.000021501595,0.00020168032],"domain_scores_gemma":[0.9998107,0.000013370784,0.000057467383,0.000059198916,0.0000016672558,0.00005760449],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000103049904,0.0000969138,0.00022832432,0.000059455244,0.0000288739,0.0000037887169,0.000020263029,0.0001290114,0.00003718861],"category_scores_gemma":[0.0000045721854,0.00009006242,0.000017170627,0.000022908347,0.00017418648,0.000033949178,0.000020870355,0.00011329901,0.000002071734],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011472092,0.000105648425,0.001181928,0.000011472498,0.000007740967,0.0000020221692,0.00003626701,3.556981e-7,0.9529705,0.00000494619,0.0000677564,0.044464126],"study_design_scores_gemma":[0.0023101377,0.0017414473,0.19176045,0.000010887887,0.00000922663,0.00016262403,0.00018143494,0.000028598919,0.8027759,0.00006154022,0.0008760087,0.0000817001],"about_ca_topic_score_codex":0.000030630817,"about_ca_topic_score_gemma":0.000007215975,"teacher_disagreement_score":0.19057852,"about_ca_system_score_codex":0.000050095212,"about_ca_system_score_gemma":0.0000026506125,"threshold_uncertainty_score":0.3672639},"labels":[],"label_agreement":null},{"id":"W2171864383","doi":"10.1128/aem.05020-11","title":"Induction of Viable but Nonculturable Escherichia coli O157:H7 in the Phyllosphere of Lettuce: a Food Safety Risk Factor","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":142,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Viable but nonculturable; Phyllosphere; Escherichia coli; Biology; Microbiology; Bacteria; Human pathogen; Food microbiology; Pathogen; Enterobacteriaceae; Population; Strain (injury); Microcosm; Food science","score_opus":0.023104485604330333,"score_gpt":0.2071609309954491,"score_spread":0.18405644539111876,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171864383","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99774665,0.00044914885,0.000061711115,0.000008006688,0.00006455234,0.00028378508,0.00041633,0.0000026053954,0.0009672083],"genre_scores_gemma":[0.99849534,0.0005024556,0.00064335193,0.00008950126,0.00003173698,0.000022435224,0.00016515207,0.000012727481,0.000037301197],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991518,0.00007742615,0.00027689937,0.0002805864,0.00003123517,0.00018205309],"domain_scores_gemma":[0.9995282,0.000011157094,0.00017732102,0.00025641275,0.0000037444274,0.000023156477],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011861343,0.0001555629,0.00020773505,0.000013592015,0.000050336723,0.0000022871457,0.00018300768,0.00021582794,0.00006791788],"category_scores_gemma":[0.0000039499732,0.00011721749,0.000049517836,0.00004349092,0.00032497925,0.0000040492378,0.0001645022,0.00010720851,0.0000030815606],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024005913,0.00014487281,0.006065387,0.000015970974,0.00006475219,2.601187e-7,0.000487928,0.000008379113,0.99198824,0.000054384833,0.000024020657,0.0009057313],"study_design_scores_gemma":[0.0007942212,0.000516254,0.034605466,0.0000038291173,0.000024088415,0.000015731868,0.0013410507,9.899093e-7,0.9587188,0.00005659339,0.0037801825,0.00014280423],"about_ca_topic_score_codex":0.000078267316,"about_ca_topic_score_gemma":0.000035058507,"teacher_disagreement_score":0.033269465,"about_ca_system_score_codex":0.000016692176,"about_ca_system_score_gemma":0.000010941392,"threshold_uncertainty_score":0.47799903},"labels":[],"label_agreement":null},{"id":"W2171910955","doi":"10.1128/aem.00139-08","title":"Evaluation of Reuterin Production in Urogenital Probiotic <i>Lactobacillus reuteri</i> RC-14","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Lactobacillus reuteri; Probiotic; Lactobacillus; Microbiology; Dehydratase; Biology; Lactic acid; Bacteria; Chemistry; Enzyme; Biochemistry","score_opus":0.019504944098942215,"score_gpt":0.18447688018292094,"score_spread":0.16497193608397873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171910955","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987646,0.00022059128,6.5455606e-7,0.000112371825,0.000077952995,0.00039024602,0.00005723042,0.000010598624,0.0003657506],"genre_scores_gemma":[0.9993535,0.00020960407,0.00005893286,0.000058406047,0.00003788411,0.000019444222,0.0002341982,0.0000012932455,0.000026681368],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991381,0.000064601794,0.0002209528,0.00030920524,0.000076933946,0.00019019752],"domain_scores_gemma":[0.9998123,0.0000134963975,0.00007744639,0.000056858345,0.0000072972557,0.00003258635],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002960743,0.00012321693,0.00016197257,0.000016663133,0.00007353511,0.0000035680816,0.00008219778,0.00011645146,0.00007088224],"category_scores_gemma":[0.000005395412,0.00006145874,0.00002945919,0.00008215497,0.00022252306,0.000037624923,0.000086569926,0.000087165325,0.00001156009],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002651477,0.00015204973,0.0030830577,0.0000034791046,0.000011538979,0.0000010680966,0.00009299712,0.0000098437995,0.98083234,0.00001579453,0.000025244424,0.015746068],"study_design_scores_gemma":[0.0014628473,0.0007841871,0.33374512,0.000023929113,0.000083208266,0.0004900847,0.00057057897,0.0000745883,0.6580098,0.0005579612,0.003653203,0.00054445874],"about_ca_topic_score_codex":0.000016232561,"about_ca_topic_score_gemma":0.000034390006,"teacher_disagreement_score":0.33066207,"about_ca_system_score_codex":0.000056170815,"about_ca_system_score_gemma":0.0000055677383,"threshold_uncertainty_score":0.25062147},"labels":[],"label_agreement":null},{"id":"W2171918702","doi":"10.1128/aem.01127-08","title":"Multilocus Genotyping Assays for Single Nucleotide Polymorphism-Based Subtyping of <i>Listeria monocytogenes</i> Isolates","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":161,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Subtyping; Biology; Listeria monocytogenes; Genotyping; Genotype; Multilocus sequence typing; Genetics; Single-nucleotide polymorphism; Lineage (genetic); Population; Gene; Bacteria","score_opus":0.03607175980037249,"score_gpt":0.23286213217482704,"score_spread":0.19679037237445454,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171918702","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949817,0.0012557751,0.0026032862,0.00003309341,0.00016418936,0.00039317284,0.00036303955,0.0000138333735,0.0001919118],"genre_scores_gemma":[0.9941512,0.00018743753,0.0039374474,0.0005047686,0.00012152739,0.000047169262,0.00096893916,0.000047303514,0.00003420313],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987818,0.000033060165,0.0003340832,0.00049634336,0.000025973426,0.00032871962],"domain_scores_gemma":[0.99942654,0.000030190275,0.00016319449,0.0003077985,0.0000069621256,0.00006530431],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00008964743,0.0002507205,0.00029091592,0.000039546798,0.00016051944,0.0000056347417,0.00017313703,0.00023785731,0.000014267258],"category_scores_gemma":[0.0000055409873,0.00025974645,0.00010004318,0.000028059443,0.00044758004,0.0000040006657,0.00022676107,0.000050900337,0.0000044049607],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042907026,0.0001042189,0.0023105538,0.00002894191,0.00006165539,0.0000012539431,0.000052580337,0.00006487001,0.9958257,0.000015439886,0.00006700297,0.0010386857],"study_design_scores_gemma":[0.0014216386,0.00033320414,0.0008375144,0.0000063262687,0.000030004061,0.00010053967,0.000059684833,0.000039887418,0.9818984,0.000018006085,0.014966556,0.0002881998],"about_ca_topic_score_codex":0.000012894657,"about_ca_topic_score_gemma":0.000004308121,"teacher_disagreement_score":0.014899553,"about_ca_system_score_codex":0.00003369267,"about_ca_system_score_gemma":0.000021652973,"threshold_uncertainty_score":0.99998546},"labels":[],"label_agreement":null},{"id":"W2171968520","doi":"10.1128/aem.00215-14","title":"Structure-Based Mutational Studies of Substrate Inhibition of Betaine Aldehyde Dehydrogenase BetB from Staphylococcus aureus","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Betaine; Active site; Aldehyde dehydrogenase; Aldehyde; Cofactor; Substrate (aquarium); Binding site; Stereochemistry; Enzyme; Biochemistry; Chemistry; Mutant; Biology","score_opus":0.006158404855872316,"score_gpt":0.19091151428410283,"score_spread":0.1847531094282305,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171968520","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981709,0.00030731916,0.00036350728,0.00002204713,0.0000933275,0.00012431701,0.0008745746,0.000010459627,0.00003355947],"genre_scores_gemma":[0.99772656,0.0000139934855,0.0011947314,0.00013207742,0.000056716155,0.000006939589,0.00085790036,0.000008642213,0.0000024694834],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999222,0.00004669791,0.00027902535,0.0002592541,0.000052018608,0.0001410486],"domain_scores_gemma":[0.99955654,0.00009335179,0.00018893878,0.0001228686,0.000006956697,0.0000313176],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008763755,0.00014292913,0.0002649895,0.000042591124,0.00005962879,0.0000035229293,0.000052990858,0.00009897653,0.00021438905],"category_scores_gemma":[0.0000052112136,0.000119106124,0.00003224392,0.000030479157,0.00051247224,0.000030428313,0.00004030093,0.0000564027,0.000006027164],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000071903225,0.000028702083,0.0012513803,0.000026609907,0.00002362824,5.697312e-7,0.00014855502,0.000403494,0.9973796,0.0003827426,0.000028638708,0.0002541471],"study_design_scores_gemma":[0.0007804559,0.00012796817,0.006107717,0.000007542657,0.000041247236,0.000002079473,0.00020294457,0.000018974752,0.9889907,0.003524699,0.00008533944,0.00011028292],"about_ca_topic_score_codex":0.00002728357,"about_ca_topic_score_gemma":0.000027155344,"teacher_disagreement_score":0.00838888,"about_ca_system_score_codex":0.000020732563,"about_ca_system_score_gemma":0.000007981699,"threshold_uncertainty_score":0.48570067},"labels":[],"label_agreement":null},{"id":"W2172056645","doi":"10.1128/aem.00740-09","title":"Alleviation of Proteolytic Sensitivity To Enhance Recombinant Lipase Production in <i>Escherichia coli</i>","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme Catalysis and Immobilization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"","keywords":"Escherichia coli; Lipase; Recombinant DNA; Microbiology; Sensitivity (control systems); Proteolytic enzymes; Chemistry; Enterobacteriaceae; Biology; Biochemistry; Enzyme; Gene","score_opus":0.0030679325300325016,"score_gpt":0.19568863779918227,"score_spread":0.19262070526914976,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2172056645","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99895555,0.000100014564,0.000330006,0.0001450484,0.00003605061,0.00035920856,0.000007926787,0.0000027787876,0.00006342778],"genre_scores_gemma":[0.99876857,0.00016738438,0.00029882457,0.0003157631,0.00002622758,0.000020641164,0.0002890196,0.000005561276,0.000108018554],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99938333,0.000033324675,0.00015963704,0.0002900321,0.000018263287,0.00011543677],"domain_scores_gemma":[0.99977607,0.0000032192186,0.000059908176,0.00013175205,0.0000034354605,0.000025593094],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013275273,0.000091166396,0.00012603987,0.000027538277,0.000023342409,0.000002407551,0.000029001725,0.00008599223,0.000003272293],"category_scores_gemma":[0.000010137613,0.00008953775,0.00001886515,0.000050889066,0.000047469995,0.0000030078509,0.000032225173,0.00004062243,0.000004091499],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000066228204,0.00013161018,0.00039931244,0.0000062681006,0.0000054295765,2.5732885e-7,0.000057064895,0.00010359268,0.9959341,0.0000152501,0.00009369767,0.003187146],"study_design_scores_gemma":[0.00016344198,0.00023938858,0.011349154,0.0000064484702,0.000005906354,0.0000059153595,0.00004407438,0.0000076257597,0.9866192,0.000020671207,0.0014387197,0.00009946307],"about_ca_topic_score_codex":0.000005356254,"about_ca_topic_score_gemma":0.000011632387,"teacher_disagreement_score":0.010949842,"about_ca_system_score_codex":0.000016397962,"about_ca_system_score_gemma":0.0000062039003,"threshold_uncertainty_score":0.36512437},"labels":[],"label_agreement":null},{"id":"W2173798746","doi":"10.1128/aem.02156-15","title":"<i>In Vitro</i> Culture of Previously Uncultured Oral Bacterial Phylotypes","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of Dental and Craniofacial Research","keywords":"Microbiology; Biology; Bacteria; Actinomyces; Veillonella; Lachnospiraceae; Enrichment culture; Fastidious organism; Agar plate; Agar; Fusobacterium; Fusobacteria; Bacteroidetes; 16S ribosomal RNA; Bacteroides; Firmicutes; Streptococcus","score_opus":0.011209445465903143,"score_gpt":0.23418081835929083,"score_spread":0.2229713728933877,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2173798746","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970422,0.0009881853,0.0000039199117,0.000033911096,0.00026840836,0.0002338371,0.00035643613,0.00001171245,0.0010614237],"genre_scores_gemma":[0.9974902,0.00011737253,0.00031299057,0.00016688372,0.000074318836,0.000015927802,0.00079495634,0.000013133481,0.0010142109],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989844,0.00009175126,0.00024548563,0.0003239371,0.000034149045,0.00032026952],"domain_scores_gemma":[0.99967897,0.00001592309,0.000068391935,0.0001490805,0.000004550201,0.00008309207],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015611984,0.00017419746,0.00034739389,0.000042221793,0.00003876585,0.000010665799,0.00015594099,0.0003016544,0.0003263466],"category_scores_gemma":[0.0000059734384,0.00014294362,0.000044583576,0.00005389754,0.000457104,0.000055713946,0.00017162344,0.00020795337,0.00021746167],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048818922,0.00011127736,0.0035444836,0.000014612614,0.000027410499,0.00002382335,0.00048705933,0.000001269261,0.99026966,0.000049130147,0.0044183517,0.0005647337],"study_design_scores_gemma":[0.0046254327,0.00026478164,0.0059280037,0.000011236502,0.000028680028,0.0006521708,0.0009825815,0.0000016320696,0.82182527,0.00029528196,0.16498286,0.0004020448],"about_ca_topic_score_codex":0.00007395666,"about_ca_topic_score_gemma":0.00004894982,"teacher_disagreement_score":0.16844437,"about_ca_system_score_codex":0.000044467906,"about_ca_system_score_gemma":0.000015895392,"threshold_uncertainty_score":0.58290714},"labels":[],"label_agreement":null},{"id":"W2177704324","doi":"10.1128/aem.70.1.52-60.2004","title":"Structural and Spectral Features of Selenium Nanospheres Produced by Se-Respiring Bacteria","year":2004,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Selenium in Biological Systems","field":"Nursing","cited_by":442,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Selenium; Selenate; Extracellular; Electron acceptor; Chemistry; Bacteria; Raman spectroscopy; Intracellular; Electron donor; Biophysics; Biochemistry; Biology; Organic chemistry; Catalysis","score_opus":0.005606092655820396,"score_gpt":0.1917972589286539,"score_spread":0.1861911662728335,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2177704324","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99808735,0.0010458915,0.0000014526845,0.00014531781,0.00021691411,0.0002970331,0.00008754066,0.000030778698,0.00008771813],"genre_scores_gemma":[0.99920386,0.000031623407,0.00036892222,0.00015756933,0.00008605681,0.000009454549,0.000107662345,0.000016962369,0.00001786022],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99897105,0.0000358613,0.00022958829,0.00042609058,0.000031614847,0.00030581263],"domain_scores_gemma":[0.99967945,0.00003064968,0.00010005107,0.00012921279,0.0000014876503,0.000059138532],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000056171437,0.00021163677,0.00029594803,0.000017459583,0.00009179905,0.000012995415,0.00009715494,0.00019672667,0.000056296627],"category_scores_gemma":[0.0000034835514,0.00016535877,0.000029631216,0.000029814388,0.00041107272,0.000032304662,0.000091395086,0.00013882387,0.000006241313],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001588071,0.000026484087,0.006198998,0.000024792907,0.000022951022,3.056262e-7,0.0002301271,0.0000042208508,0.99236643,0.00009719123,0.00011512579,0.0007545465],"study_design_scores_gemma":[0.0008501686,0.00020593511,0.0639477,0.000009038333,0.000016050122,0.0001007162,0.00019865265,3.6636115e-7,0.9333601,0.00018238532,0.0009299278,0.00019896892],"about_ca_topic_score_codex":0.00009836148,"about_ca_topic_score_gemma":0.000007592103,"teacher_disagreement_score":0.059006356,"about_ca_system_score_codex":0.000056632798,"about_ca_system_score_gemma":0.000002206803,"threshold_uncertainty_score":0.6743135},"labels":[],"label_agreement":null},{"id":"W2180687425","doi":"10.1128/aem.02776-15","title":"MiL-FISH: Multilabeled Oligonucleotides for Fluorescence <i>In Situ</i> Hybridization Improve Visualization of Bacterial Cells","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Max-Planck-Gesellschaft; Gordon and Betty Moore Foundation","keywords":"Fluorescence in situ hybridization; Oligonucleotide; Fish <Actinopterygii>; Biology; Oligomer restriction; In situ; Computational biology; Cell sorting; Isolation (microbiology); Chemistry; Microbiology; Biochemistry; DNA; Cell; Gene","score_opus":0.007934341270646583,"score_gpt":0.20142192834814415,"score_spread":0.19348758707749758,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2180687425","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988015,0.000014206517,0.00020327374,0.000025159048,0.00014983988,0.00047293276,0.0001003183,0.000017160497,0.0002155555],"genre_scores_gemma":[0.9977592,0.000057149504,0.0011085217,0.00024038983,0.00002527849,0.000029701778,0.00073496473,0.000019517774,0.000025249547],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99904346,0.00009081738,0.00028215334,0.00030292966,0.000025817666,0.0002548214],"domain_scores_gemma":[0.99957156,0.0000797037,0.00012949368,0.00015657894,0.0000024060955,0.00006024767],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020691592,0.00015867852,0.0002552284,0.00003360996,0.000059950256,0.0000045993256,0.00015641387,0.0001652211,0.00017022471],"category_scores_gemma":[0.000009783392,0.00016118136,0.000029224104,0.000056519504,0.0004690144,0.00006593107,0.0002325047,0.0000845214,0.000028470846],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021452823,0.00016822356,0.0018913803,0.0000109200255,0.000007682382,3.5268044e-7,0.0003890866,0.0001086086,0.9955749,0.00006153763,0.0008713476,0.0007014408],"study_design_scores_gemma":[0.0021274542,0.00029861464,0.0059898724,0.0000046184814,0.000017817023,0.000006641136,0.00024372144,0.00012016701,0.984502,0.0002680731,0.006187249,0.00023377281],"about_ca_topic_score_codex":0.000062796455,"about_ca_topic_score_gemma":0.00022219127,"teacher_disagreement_score":0.011072894,"about_ca_system_score_codex":0.00007864439,"about_ca_system_score_gemma":0.000007606113,"threshold_uncertainty_score":0.65727854},"labels":[],"label_agreement":null},{"id":"W2181166417","doi":"10.1128/aem.02603-15","title":"A Virulent Phage Infecting Lactococcus garvieae, with Homology to Lactococcus lactis Phages","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"ORFS; Biology; Siphoviridae; Lactococcus lactis; Virulence; Genome; Bacteriophage; Genetics; Open reading frame; Capsid; Microbiology; Lactococcus; Virology; Gene; Bacteria; Peptide sequence; Escherichia coli","score_opus":0.008099295001225108,"score_gpt":0.1990072461783454,"score_spread":0.19090795117712028,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2181166417","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9902026,0.00005504954,0.00033848177,0.00023796578,0.00014437443,0.0007038399,0.00008586053,0.000061918196,0.008169875],"genre_scores_gemma":[0.996341,0.000030413292,0.0011627414,0.0014935145,0.00006083454,0.00014872669,0.00009451478,0.000038097423,0.000630162],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99844116,0.000060057668,0.00025689052,0.00063628925,0.000060812745,0.0005448052],"domain_scores_gemma":[0.99925315,0.00005173091,0.00010784598,0.0002716366,0.0000022903255,0.00031334575],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00014135633,0.0003332323,0.00032453192,0.00006065688,0.00017752954,0.00003853511,0.00018573894,0.00015720878,0.0016148713],"category_scores_gemma":[0.0000058545274,0.0002783179,0.00004492537,0.00011463908,0.00039103025,0.00014107276,0.00047132236,0.00025937989,0.0016372931],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012100519,0.00018691586,0.0067789955,0.0000043496434,0.000037119124,0.000027951277,0.00064573676,0.000056744175,0.98051465,0.000026078398,0.0015071495,0.010093281],"study_design_scores_gemma":[0.004706418,0.0019517159,0.11570029,0.000032782224,0.00015965123,0.0025243666,0.00242186,0.00001827583,0.20812525,0.00015793003,0.66253376,0.0016677349],"about_ca_topic_score_codex":0.00030987896,"about_ca_topic_score_gemma":0.00028255887,"teacher_disagreement_score":0.7723894,"about_ca_system_score_codex":0.00025087938,"about_ca_system_score_gemma":0.000009614829,"threshold_uncertainty_score":0.9999669},"labels":[],"label_agreement":null},{"id":"W2204910515","doi":"10.1128/aem.01699-15","title":"Development and Evaluation of Three Real-Time PCR Assays for Genotyping and Source Tracking Cryptosporidium spp. in Water","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta","funders":"","keywords":"Genotyping; Cryptosporidium; Biology; Cryptosporidium parvum; 18S ribosomal RNA; Genotype; Microbiology; Ribosomal RNA; Gene; Genetics","score_opus":0.024452203200303516,"score_gpt":0.22871111181368584,"score_spread":0.2042589086133823,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2204910515","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99813163,0.0006820962,0.0003789272,0.000019448133,0.00006729033,0.00035283866,0.000017794677,0.000008090009,0.00034190348],"genre_scores_gemma":[0.99858636,0.000068825924,0.0008922896,0.000030546078,0.000011404641,0.0000453578,0.00032153603,0.000009386847,0.000034326058],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99928033,0.000038830993,0.00021935672,0.00023010487,0.000013816233,0.00021757971],"domain_scores_gemma":[0.9997648,0.00008494853,0.000052608957,0.00006804448,0.000008305655,0.00002128887],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005467055,0.00012217228,0.00020774295,0.000057941586,0.000088185174,0.000004718782,0.000030187432,0.0001782105,0.00005402916],"category_scores_gemma":[0.000010680968,0.00010206933,0.000011953917,0.00001459544,0.00022504888,0.000025862455,0.00007134378,0.00007012277,0.000024234481],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000060731276,0.000058528007,0.008353828,0.000010648832,0.000039044546,2.5658827e-7,0.0009458782,0.000032169435,0.97734004,0.00016318134,0.0000332415,0.012962461],"study_design_scores_gemma":[0.008496695,0.0002805944,0.09030628,0.000035769433,0.00020905858,0.0002410066,0.0018830353,0.00016030719,0.87647086,0.0016150913,0.019760644,0.00054063625],"about_ca_topic_score_codex":0.000030798914,"about_ca_topic_score_gemma":0.000020969868,"teacher_disagreement_score":0.10086915,"about_ca_system_score_codex":0.000052382024,"about_ca_system_score_gemma":0.000018460683,"threshold_uncertainty_score":0.41622666},"labels":[],"label_agreement":null},{"id":"W2228686700","doi":"10.1128/aem.03528-15","title":"Erratum for Chandran and Mazumder, Pathogenic Potential, Genetic Diversity, and Population Structure of Escherichia coli Strains Isolated from a Forest-Dominated Watershed (Comox Lake) in British Columbia, Canada","year":2016,"lang":"en","type":"erratum","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Victoria","funders":"","keywords":"Watershed; Escherichia coli; Genetic diversity; Population structure; Biology; Diversity (politics); Population; Ecology; Geography; Genetics; Demography; Gene; Anthropology; Sociology","score_opus":0.0033532148218530073,"score_gpt":0.15226858303732152,"score_spread":0.14891536821546852,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2228686700","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9928949,0.00038437304,0.000013565032,0.000024904075,0.00057004037,0.000733,0.0053471844,0.0000073755277,0.000024691273],"genre_scores_gemma":[0.98942316,0.00087419414,0.000106794796,0.00020727562,0.00004280342,0.000014175385,0.008612508,0.000030055096,0.0006890647],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99840593,0.0001417065,0.00035941173,0.0006239503,0.00004613412,0.00042285444],"domain_scores_gemma":[0.999414,0.000051200957,0.00023413949,0.00020365814,0.0000024889657,0.00009450094],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000061929095,0.00028840188,0.0006312358,0.00003125788,0.0004724765,0.000020722062,0.00022626702,0.0008003475,0.000811199],"category_scores_gemma":[0.0000036905672,0.0003632134,0.000041520027,0.000044364002,0.00068962923,0.000042168,0.0012688449,0.00040758261,0.0000010303003],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000112019596,0.00007002156,0.12824544,0.00006651946,0.00010718546,0.000015483241,0.00028630017,0.000014399009,0.85384184,7.672251e-7,0.016294228,0.00094581133],"study_design_scores_gemma":[0.0023355715,0.00023369794,0.9921683,0.000039649374,0.00012590569,0.000055874545,0.00016297941,0.00006230798,0.00012128381,0.001394836,0.002787131,0.00051247975],"about_ca_topic_score_codex":0.49411175,"about_ca_topic_score_gemma":0.9867123,"teacher_disagreement_score":0.86392283,"about_ca_system_score_codex":0.00013238279,"about_ca_system_score_gemma":0.000025008028,"threshold_uncertainty_score":0.999882},"labels":[],"label_agreement":null},{"id":"W2229013467","doi":"10.1128/aem.03453-15","title":"Dividing the Large Glycoside Hydrolase Family 43 into Subfamilies: a Motivation for Detailed Enzyme Characterization","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":236,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome British Columbia; University of British Columbia","funders":"Agence Nationale de la Recherche","keywords":"Glycoside hydrolase; Enzyme; Biology; Hydrolase; Glycoside; Computational biology; Biochemistry; Botany","score_opus":0.005353994829364362,"score_gpt":0.18104331524853515,"score_spread":0.1756893204191708,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2229013467","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9750314,0.00013197068,0.023779474,0.00040965228,0.00010753022,0.0003607242,0.00014825026,0.00001337242,0.00001766338],"genre_scores_gemma":[0.99574393,0.00043285938,0.00009110246,0.0008361535,0.00018988397,0.000120018645,0.002288265,0.000020421161,0.00027737586],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99922544,0.00003373898,0.00017377526,0.0003485503,0.000025095716,0.00019337416],"domain_scores_gemma":[0.9996765,0.000022743625,0.00009323329,0.00016952096,0.0000056084,0.000032355623],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000120422825,0.000142226,0.00010424277,0.00002395268,0.00019375807,0.000012314054,0.00008198808,0.0001284551,0.000017080709],"category_scores_gemma":[0.000016496395,0.00009317042,0.000036989364,0.000025057818,0.000115908435,0.000008847145,0.00008817707,0.000035257533,0.000012457423],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008731387,0.000039268507,0.0026855606,0.0000070765755,0.000023365927,6.9494334e-8,0.00008320087,6.835167e-7,0.99439764,0.00014525057,0.00012776887,0.002402773],"study_design_scores_gemma":[0.00095501577,0.0001000311,0.014359741,0.00000527498,0.000016622633,0.000008941651,0.0001516381,0.000010407946,0.89736307,0.00008205849,0.08678768,0.00015953639],"about_ca_topic_score_codex":8.7439537e-7,"about_ca_topic_score_gemma":0.0000027676842,"teacher_disagreement_score":0.09703462,"about_ca_system_score_codex":0.000021222,"about_ca_system_score_gemma":0.0000068088257,"threshold_uncertainty_score":0.37993792},"labels":[],"label_agreement":null},{"id":"W2231078223","doi":"10.1128/aem.01278-15","title":"Stability of Secondary and Tertiary Structures of Virus-Like Particles Representing Noroviruses: Effects of pH, Ionic Strength, and Temperature and Implications for Adhesion to Surfaces","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Ionic strength; Adhesion; Thermal stability; Chemistry; Stability (learning theory); Ionic bonding; Virus; Chemical engineering; Materials science; Virology; Biology; Ion; Physical chemistry; Organic chemistry; Aqueous solution","score_opus":0.013479218559185121,"score_gpt":0.25792255954847676,"score_spread":0.24444334098929163,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2231078223","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968375,0.0021961418,0.000009539746,0.00016932882,0.000012912188,0.0004892504,0.0002768232,0.0000035737753,0.0000049349624],"genre_scores_gemma":[0.99792266,0.0006560846,0.0011846819,0.00011901351,0.000009752916,0.000022397702,0.00007666139,0.000006733001,0.0000020083617],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99924266,0.000057745132,0.00024972722,0.00025959584,0.000022514452,0.00016777661],"domain_scores_gemma":[0.99953014,0.00013136341,0.000080195925,0.00012690296,0.00000814044,0.00012325546],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016107367,0.00010078882,0.00034224233,0.000035492787,0.000035850262,0.000002636235,0.000032335436,0.000086175256,0.0000041257445],"category_scores_gemma":[0.000061948995,0.000080059355,0.000020092433,0.00002113948,0.0005186854,0.000026656424,0.00015093014,0.00007683131,9.3386184e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028096512,0.000051909497,0.20879672,0.00026768952,0.0000317425,2.588017e-7,0.00019041015,5.9182577e-7,0.7865216,0.000021748925,0.00006918693,0.0037671411],"study_design_scores_gemma":[0.0012824023,0.0007217191,0.6031203,0.000028044606,0.000031815107,0.000033156,0.00048311552,0.000005472155,0.3938787,0.0002886145,0.00007592074,0.000050722043],"about_ca_topic_score_codex":0.000051538194,"about_ca_topic_score_gemma":0.000029374643,"teacher_disagreement_score":0.3943236,"about_ca_system_score_codex":0.0000098941355,"about_ca_system_score_gemma":0.000011522602,"threshold_uncertainty_score":0.32647255},"labels":[],"label_agreement":null},{"id":"W2271716517","doi":"10.1128/aem.02723-15","title":"Genomic Diversity of Phages Infecting Probiotic Strains of Lactobacillus paracasei","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Agencia Nacional de Promoción Científica y Tecnológica; Consejo Nacional de Investigaciones Científicas y Técnicas; Canada Research Chairs","keywords":"Lactobacillus paracasei; Probiotic; Biology; Microbiology; Lactobacillus; Bacteriophage; Genetics; Bacteria; Gene; Escherichia coli","score_opus":0.01394489783090552,"score_gpt":0.1972079759122515,"score_spread":0.18326307808134598,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2271716517","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99781376,0.000048212765,0.00004383678,0.000017820088,0.00006316359,0.00017074274,0.00012647307,0.000008935989,0.0017070313],"genre_scores_gemma":[0.999376,0.000037828417,0.00036067216,0.000058873975,0.000011242811,0.0000024245226,0.00005646748,0.000008005161,0.000088500434],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993274,0.000025538156,0.0002074212,0.00022701279,0.000030566647,0.00018206009],"domain_scores_gemma":[0.9996367,0.000020959722,0.00014617614,0.00012363258,0.0000012409755,0.00007127637],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009844271,0.00012782379,0.00020816895,0.00002479384,0.00008232904,0.0000034654574,0.00011028673,0.00008710753,0.00046330146],"category_scores_gemma":[0.0000032059095,0.00011995094,0.000042260464,0.000039957977,0.0005169232,0.000059448157,0.000660996,0.00009627782,0.00007053233],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019637482,0.000117093965,0.031087594,0.000008208238,0.00002223337,0.0000013923407,0.000679208,0.00006956796,0.965832,0.000017246608,0.00008682367,0.002059029],"study_design_scores_gemma":[0.0018584733,0.00044301976,0.5653157,0.0000157808,0.00010787708,0.00022197973,0.002417151,0.000019128,0.4244978,0.00017457707,0.0044784746,0.00045003067],"about_ca_topic_score_codex":0.00030260513,"about_ca_topic_score_gemma":0.00004097046,"teacher_disagreement_score":0.54133415,"about_ca_system_score_codex":0.00008898228,"about_ca_system_score_gemma":0.0000044789613,"threshold_uncertainty_score":0.5072826},"labels":[],"label_agreement":null},{"id":"W2274456091","doi":"10.1128/aem.03398-15","title":"Aerobic and Anaerobic Thiosulfate Oxidation by a Cold-Adapted, Subglacial Chemoautotroph","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Aeronautics and Space Administration","keywords":"Anaerobic exercise; Thiosulfate; Oxidation reduction; Chemistry; Biology; Biochemistry; Sulfur","score_opus":0.006223021937456996,"score_gpt":0.17032418957996417,"score_spread":0.16410116764250718,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2274456091","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976661,0.00020011723,0.00004493349,0.00018716467,0.000083236046,0.00026688798,0.000035734334,0.000034059878,0.0014817442],"genre_scores_gemma":[0.9973804,0.00015947314,0.0004106161,0.0011452204,0.000025664855,0.00002286849,0.0005649939,0.000018222685,0.00027253918],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988268,0.00011982772,0.00021827381,0.00044069908,0.000038307306,0.00035609322],"domain_scores_gemma":[0.9994836,0.000044999775,0.00009491162,0.00021359228,0.0000012446567,0.00016164503],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001640139,0.0002447047,0.00027891694,0.000027371636,0.00023315463,0.0000139235635,0.00017752379,0.00027433338,0.0007398503],"category_scores_gemma":[0.0000047219332,0.00023954715,0.000025533787,0.00006273372,0.0009558164,0.000084830135,0.000505477,0.00025453733,0.0004098201],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000079049314,0.00009097341,0.0022602095,0.000002846451,0.00001708043,0.0000016919099,0.00027043783,0.000016468623,0.98808706,0.00027282574,0.008208473,0.00069286145],"study_design_scores_gemma":[0.009688505,0.0017886071,0.045415927,0.0000139540625,0.00018529793,0.0006244328,0.0018458071,0.000098609155,0.39609253,0.0041191564,0.53771895,0.002408198],"about_ca_topic_score_codex":0.00011079734,"about_ca_topic_score_gemma":0.00013836153,"teacher_disagreement_score":0.5919945,"about_ca_system_score_codex":0.0001130596,"about_ca_system_score_gemma":0.000006611876,"threshold_uncertainty_score":0.97684497},"labels":[],"label_agreement":null},{"id":"W2275450845","doi":"10.1128/aem.04031-15","title":"Identifying Potential Mechanisms Enabling Acidophily in the Ammonia-Oxidizing Archaeon “Candidatus Nitrosotalea devanaterra”","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":158,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Environment Research Council; Sight Research UK; Koninklijk Nederlands Instituut voor Onderzoek der Zee; AXA Research Fund; National Science Foundation","keywords":"Archaea; Candidatus; Ammonia; Nitrification; Biochemistry; Microorganism; Bacteria; Chemistry; Biology; Gene; Environmental chemistry; Genome; Genetics; Nitrogen; Organic chemistry","score_opus":0.006781529444704573,"score_gpt":0.17961801327583005,"score_spread":0.1728364838311255,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2275450845","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99840885,0.000117996904,0.0005946781,0.00023712406,0.00008948241,0.00030880258,0.000033184122,0.00002178281,0.00018810341],"genre_scores_gemma":[0.9959769,0.00018017739,0.0032630407,0.0002842316,0.000039308565,0.00003995155,0.00006111002,0.0000223075,0.00013296984],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99845695,0.00008264339,0.0002536237,0.0005432415,0.00010492987,0.0005586285],"domain_scores_gemma":[0.9995844,0.00004266761,0.0000732318,0.00023029068,4.2526239e-7,0.00006897967],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023389842,0.00026538907,0.00020705027,0.00005865751,0.0002155563,0.000029802946,0.00027991756,0.00012473653,0.00036753772],"category_scores_gemma":[0.0000015767768,0.00015583354,0.000061100975,0.000072257404,0.00045289326,0.00012319059,0.0003969715,0.00013375952,0.0004547754],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049246974,0.000068343696,0.0023767343,0.0000028046059,0.000018548712,0.000048604834,0.00042809692,0.00000540125,0.9919592,0.00017350419,0.00002266778,0.004846852],"study_design_scores_gemma":[0.003643314,0.0002141377,0.028413069,0.000031088148,0.00008248639,0.0008834453,0.0018873651,0.000013690734,0.9499978,0.010534264,0.0035739942,0.00072537526],"about_ca_topic_score_codex":0.000114568225,"about_ca_topic_score_gemma":0.00007115118,"teacher_disagreement_score":0.041961424,"about_ca_system_score_codex":0.00014900566,"about_ca_system_score_gemma":0.0000027781539,"threshold_uncertainty_score":0.63547075},"labels":[],"label_agreement":null},{"id":"W2275786893","doi":"10.1128/aem.03513-15","title":"Tyrosine Phosphorylation and Dephosphorylation in Burkholderia cenocepacia Affect Biofilm Formation, Growth under Nutritional Deprivation, and Pathogenicity","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Consejo Nacional de Ciencia y Tecnología; Cystic Fibrosis Canada","keywords":"Protein tyrosine phosphatase; Tyrosine; Biology; Burkholderia cenocepacia; Tyrosine phosphorylation; Microbiology; Phosphorylation; Biochemistry; Tyrosine kinase; Phosphatase; Autophosphorylation; Virulence; Signal transduction; Protein kinase A; Gene","score_opus":0.012177928019400859,"score_gpt":0.2270958546929864,"score_spread":0.21491792667358556,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2275786893","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99616295,0.0019513188,0.000993013,0.00027337807,0.000019509316,0.00044986306,0.00006474752,0.000015222638,0.00007001662],"genre_scores_gemma":[0.9957735,0.00070145744,0.0023327568,0.00019067353,0.000025386413,0.000032603755,0.00092236133,0.000011135518,0.00001015414],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992388,0.000029383875,0.00020219677,0.0002736214,0.00006788898,0.0001881082],"domain_scores_gemma":[0.99968755,0.000058016507,0.00005535487,0.000074056996,0.000010155729,0.00011484192],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016769828,0.00013381048,0.0001874602,0.00008626736,0.00006828116,0.0000147703695,0.000023368852,0.00011190984,0.000021266946],"category_scores_gemma":[0.00002405967,0.00012563645,0.00001233284,0.00007578136,0.000264668,0.000117970565,0.000068851936,0.00010540954,0.000006699759],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026327526,0.000077337194,0.07433063,0.000040633473,0.000010637267,0.0000018269294,0.00016863561,0.0000078344565,0.9229365,0.0006815127,0.000084859275,0.0013963372],"study_design_scores_gemma":[0.0049543413,0.000304605,0.85723567,0.000035878664,0.000028452163,0.00033075683,0.00061555894,0.00034577356,0.13091566,0.004292053,0.0007143114,0.0002269574],"about_ca_topic_score_codex":0.000024860057,"about_ca_topic_score_gemma":0.00001471606,"teacher_disagreement_score":0.79202086,"about_ca_system_score_codex":0.00011793221,"about_ca_system_score_gemma":0.000015278947,"threshold_uncertainty_score":0.5123306},"labels":[],"label_agreement":null},{"id":"W2276341693","doi":"10.1128/aem.00509-15","title":"Meta-Analysis of the Reduction of Norovirus and Male-Specific Coliphage Concentrations in Wastewater Treatment Plants","year":2015,"lang":"en","type":"review","venue":"Applied and Environmental Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Canadian Food Inspection Agency; Environment and Climate Change Canada; Health Canada","funders":"","keywords":"Liter; Norovirus; Coliphage; Biology; Effluent; Wastewater; Toxicology; Outbreak; Environmental science; Environmental engineering; Virology; Bacteriophage","score_opus":0.11242716460767531,"score_gpt":0.31290111155479117,"score_spread":0.20047394694711584,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2276341693","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.11309281,0.8847237,7.7104863e-7,0.000033385793,0.000025371577,0.0007763479,0.001265939,0.000001678214,0.000079991834],"genre_scores_gemma":[0.1602078,0.8385039,0.0000431379,0.00001456742,0.000012381058,0.00007564021,0.00095978135,0.000008536694,0.00017428187],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99869883,0.00019942132,0.0005406206,0.000311549,0.000039958762,0.00020963725],"domain_scores_gemma":[0.99946153,0.00002809048,0.00021618287,0.00022487417,0.0000023470777,0.00006698579],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015866596,0.00020864379,0.0023960823,0.00014651445,0.000023091037,0.000001973769,0.00006171455,0.0001796462,0.00019622028],"category_scores_gemma":[0.0000018092439,0.00011737652,0.0003809885,0.00008414965,0.0005644366,0.000010411016,0.00008576289,0.0001313158,0.0000036494291],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010622994,0.00219209,0.007058652,0.0041213525,0.24476929,0.00007459913,0.001218842,0.000051940762,0.47482863,0.00019792425,0.0015934085,0.26283097],"study_design_scores_gemma":[0.002964174,0.0013584209,0.002100604,0.00023633198,0.16981658,0.0016564741,0.0005986636,0.00000664171,0.0016162535,0.000018706845,0.81924415,0.00038299584],"about_ca_topic_score_codex":0.000049240793,"about_ca_topic_score_gemma":0.000022515585,"teacher_disagreement_score":0.81765074,"about_ca_system_score_codex":0.00010649229,"about_ca_system_score_gemma":0.000022061698,"threshold_uncertainty_score":0.47864756},"labels":[],"label_agreement":null},{"id":"W2279326669","doi":"10.1128/aem.00184-16","title":"Chemical Synthesis and <i>In Vitro</i> Evaluation of a Phage Display-Derived Peptide Active against Infectious Salmon Anemia Virus","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Peptide; Equine infectious anemia; In vitro; Virus; Virology; Phage display; Biology; Anemia; Microbiology; Chemistry; Biochemistry; Medicine","score_opus":0.004976713162938054,"score_gpt":0.18968656378900348,"score_spread":0.18470985062606543,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2279326669","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99737567,0.0008952899,0.000014048628,0.00005148648,0.0000598169,0.00045859301,0.0003905136,0.000019703863,0.00073490053],"genre_scores_gemma":[0.99876255,0.0004801354,0.000021635997,0.00013190342,0.000012465399,0.000083560255,0.00042468682,0.000017116019,0.00006595666],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988058,0.0001280098,0.0002685761,0.00046713077,0.000023293846,0.00030713956],"domain_scores_gemma":[0.9995481,0.0001228832,0.0001351687,0.00015966754,0.000005602989,0.00002858981],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001872774,0.00024895283,0.00035032554,0.00008310051,0.000066718894,0.0000044181925,0.00009507123,0.00026838138,0.00016444126],"category_scores_gemma":[0.000016686014,0.00018430811,0.000052059717,0.00004357858,0.0006451908,0.00005599311,0.0001823322,0.000119253506,0.00006203175],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004556906,0.00017390637,0.0005304944,0.000017109724,0.0001068431,0.0000018241808,0.00018424766,5.747005e-7,0.9646071,0.00002847485,0.00012550474,0.033768192],"study_design_scores_gemma":[0.0027793974,0.000024399966,0.004943649,0.000023921712,0.0001646872,0.00003103584,0.00030897025,8.9899834e-7,0.99031043,0.00004325725,0.0011376382,0.0002317144],"about_ca_topic_score_codex":0.000017899469,"about_ca_topic_score_gemma":0.0000098141945,"teacher_disagreement_score":0.033536475,"about_ca_system_score_codex":0.00010032548,"about_ca_system_score_gemma":0.000011185654,"threshold_uncertainty_score":0.7515867},"labels":[],"label_agreement":null},{"id":"W2279867811","doi":"10.1128/aem.03921-15","title":"Packaging of Campylobacter jejuni into Multilamellar Bodies by the Ciliate Tetrahymena pyriformis","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec; McGill University","funders":"","keywords":"Tetrahymena pyriformis; Campylobacter jejuni; Biology; Ciliate; Microbiology; Bacteria; Campylobacter; Protozoa; Tetrahymena; Ecology","score_opus":0.0034874499565129505,"score_gpt":0.1887598529700593,"score_spread":0.18527240301354633,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2279867811","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979925,0.00083266746,0.000084637184,0.00042624373,0.000030566553,0.00013848612,0.000111638445,0.0000038904573,0.00037936307],"genre_scores_gemma":[0.9976806,0.0011451354,0.000049725797,0.0002516559,0.000042545595,0.000013858037,0.00012802193,0.000013444013,0.0006750294],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99926025,0.000030111596,0.00014844655,0.00027585967,0.000035665933,0.0002496823],"domain_scores_gemma":[0.99965876,0.000025373463,0.000053260846,0.00021351207,0.0000032267508,0.000045878955],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009830427,0.00013864813,0.00012924994,0.0000171082,0.0000974443,0.0000052978176,0.00015357097,0.00012053126,0.000052448107],"category_scores_gemma":[0.0000046034033,0.000075641205,0.000040380764,0.000014889445,0.0007553047,0.000002737774,0.0002237169,0.00006081714,0.000018276816],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039352984,0.00004757324,0.0042940485,0.000008918088,0.00003780668,4.3098842e-7,0.000102225196,2.1956338e-7,0.98580605,0.000020127509,0.0014060298,0.008237212],"study_design_scores_gemma":[0.00060719164,0.00010757946,0.0010060716,0.0000047145786,0.000009201451,0.000017571556,0.00029316905,8.527329e-7,0.9374435,0.00007472442,0.06030697,0.00012845527],"about_ca_topic_score_codex":0.000023935498,"about_ca_topic_score_gemma":0.0000111937725,"teacher_disagreement_score":0.058900937,"about_ca_system_score_codex":0.00001480537,"about_ca_system_score_gemma":0.000008204711,"threshold_uncertainty_score":0.30845588},"labels":[],"label_agreement":null},{"id":"W2280416398","doi":"10.1128/aem.02017-15","title":"Dehalogenimonas sp. Strain WBC-2 Genome and Identification of Its <i>trans</i> -Dichloroethene Reductive Dehalogenase, TdrA","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Dehalogenase; Dehalococcoides; Operon; Corrinoid; Genome; Biology; Biochemistry; Chemistry; Genetics; Gene; Escherichia coli; Vinyl chloride","score_opus":0.009879822336764791,"score_gpt":0.18867080901436392,"score_spread":0.17879098667759913,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2280416398","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977285,0.00045374222,0.00007211485,0.00012549551,0.000068420944,0.0003387674,0.00069676357,0.00001555505,0.00050061085],"genre_scores_gemma":[0.99845934,0.00049832574,0.00028014043,0.00022269656,0.000024147248,0.000008652914,0.00039333626,0.000014531167,0.000098844765],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988164,0.000049197464,0.00034842573,0.00045123923,0.00007628195,0.0002584551],"domain_scores_gemma":[0.9995134,0.000019853213,0.00015691215,0.00015315786,0.0000028754184,0.00015379667],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002540509,0.00019853745,0.00022500781,0.00003479534,0.00007374018,0.000010505382,0.00013356362,0.000158916,0.00029934297],"category_scores_gemma":[0.000005832424,0.00018264433,0.000030361785,0.00007354213,0.00075947196,0.0000768373,0.00016270627,0.00009736876,0.00012474609],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051619485,0.00008392064,0.0037828484,0.000007532292,0.000019244597,0.0000014745339,0.0007155511,0.000016606149,0.9936523,0.00004536364,0.00009403723,0.0015294905],"study_design_scores_gemma":[0.0013095213,0.00017211334,0.08539916,0.0000038986586,0.000051638053,0.00010312654,0.0011117648,0.000014208852,0.9024542,0.00034144238,0.0086432425,0.0003957115],"about_ca_topic_score_codex":0.000022719269,"about_ca_topic_score_gemma":0.000021107937,"teacher_disagreement_score":0.09119814,"about_ca_system_score_codex":0.00008912163,"about_ca_system_score_gemma":0.000007844922,"threshold_uncertainty_score":0.74480194},"labels":[],"label_agreement":null},{"id":"W2281122442","doi":"10.1128/aem.03964-15","title":"Engineering Escherichia coli for Microbial Production of Butanone","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Networks of Centres of Excellence of Canada; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Escherichia coli; Metabolic engineering; Biotransformation; Chemistry; Biochemistry; Bioproduction; Glycerol; Acetone; Fermentation; Ketone; Metabolic pathway; Organic chemistry; Metabolism; Enzyme","score_opus":0.00260505076086582,"score_gpt":0.1562214385084159,"score_spread":0.1536163877475501,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2281122442","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968448,0.00024264939,0.0022195186,0.00007482227,0.00029920976,0.00022946253,0.000071102964,0.00000956962,0.0000088507795],"genre_scores_gemma":[0.99685365,0.00027744536,0.002047947,0.000029424558,0.00027655083,0.000026065492,0.00012021849,0.000017646964,0.00035107386],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993747,0.0000066172643,0.00014575217,0.00030012804,0.000012873712,0.00015994425],"domain_scores_gemma":[0.9997786,0.0000036908207,0.00005037497,0.00013556847,0.0000044503086,0.000027281358],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008120589,0.00012074007,0.00013467271,0.000025924695,0.000028919325,0.000002028429,0.000052376494,0.00011678471,0.000008244452],"category_scores_gemma":[0.00001284676,0.00009386731,0.0000369255,0.00002118924,0.00010482748,0.0000021085064,0.000046276666,0.000026538037,0.0000033989138],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000072339266,0.000034505432,0.000073283205,0.000021442824,0.00003330704,4.1411493e-8,0.0000115234525,0.000021591411,0.99713683,0.00006687811,0.00033373246,0.0021945112],"study_design_scores_gemma":[0.0004456614,0.0000938845,0.00045861534,0.00000685206,0.000015028368,0.000021210562,0.000011707196,8.889521e-7,0.9505739,0.000007670553,0.048239436,0.00012515228],"about_ca_topic_score_codex":0.000001432876,"about_ca_topic_score_gemma":4.91931e-7,"teacher_disagreement_score":0.047905702,"about_ca_system_score_codex":0.000010124415,"about_ca_system_score_gemma":0.0000055732307,"threshold_uncertainty_score":0.38277978},"labels":[],"label_agreement":null},{"id":"W2294670934","doi":"10.1128/aem.03890-15","title":"Temperature Sensitivity Conferred by <i>ligA</i> Alleles from Psychrophilic Bacteria upon Substitution in Mesophilic Bacteria and a Yeast Species","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Psychrophile; Biology; Allele; Thermolabile; Genetics; Gene; Microbiology; Bacteria; Biochemistry; Enzyme","score_opus":0.004661323352731662,"score_gpt":0.18035189815120856,"score_spread":0.17569057479847688,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2294670934","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99752027,0.0006272317,0.00002124768,0.00020543621,0.00008630146,0.0002110845,0.0012337634,0.000006368507,0.00008830282],"genre_scores_gemma":[0.99545467,0.0026094296,0.000048765487,0.00014604392,0.00013519503,0.000017300692,0.0014576298,0.000017284736,0.00011370321],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988777,0.00007752423,0.00017601652,0.0005408973,0.000033097083,0.00029473178],"domain_scores_gemma":[0.9996587,0.000018043113,0.000045395453,0.00018694345,0.0000035676248,0.00008734118],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001070168,0.00021777903,0.00023701636,0.000027540513,0.0000689212,0.000023680248,0.00006627,0.00029419217,0.00013440168],"category_scores_gemma":[0.0000057159655,0.00016515408,0.00002944774,0.000022603712,0.0004280718,0.0000071605723,0.00015274843,0.00008524997,0.000020137497],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037197303,0.000058746173,0.0022037793,0.000005508662,0.000027526577,0.0000034530044,0.00002715521,8.887558e-8,0.9947849,0.000039636212,0.00031843982,0.0021588027],"study_design_scores_gemma":[0.0017517324,0.00012652737,0.08673161,0.000014086173,0.0000086710215,0.000046538295,0.000049538085,8.424841e-7,0.86498153,0.00005293081,0.045949392,0.00028662372],"about_ca_topic_score_codex":0.000023543413,"about_ca_topic_score_gemma":0.00008488475,"teacher_disagreement_score":0.12980339,"about_ca_system_score_codex":0.000022272858,"about_ca_system_score_gemma":0.000012353066,"threshold_uncertainty_score":0.67347884},"labels":[],"label_agreement":null},{"id":"W2296123365","doi":"10.1128/aem.00351-16","title":"Diversity of Clinical and Environmental Isolates of Vibrio cholerae in Natural Transformation and Contact-Dependent Bacterial Killing Indicative of Type VI Secretion System Activity","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Petroleum Technology Alliance Canada; Gordon and Betty Moore Foundation; National Science Foundation","keywords":"Vibrio cholerae; Microbiology; Transformation (genetics); Biology; Diversity (politics); Secretion; Cholera; Vibrio; Bacteria; Gene; Genetics; Biochemistry","score_opus":0.0078102848165519925,"score_gpt":0.22285577800892375,"score_spread":0.21504549319237176,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2296123365","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99922967,0.00021179684,0.00004741267,0.000013129085,0.00003893777,0.00020440512,0.00024141149,0.0000012867412,0.000011978204],"genre_scores_gemma":[0.99815685,0.001677271,0.00002592003,0.0000042361285,0.000015233273,0.0000031164716,0.00010933837,0.000004489751,0.000003522709],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993265,0.00007213376,0.00024810407,0.00021194515,0.00003085034,0.00011041939],"domain_scores_gemma":[0.99963796,0.000033288627,0.00022495726,0.000071214796,0.0000025047877,0.000030059278],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016385768,0.00010037409,0.0002650682,0.000030747487,0.000048784965,0.0000013689779,0.000046726465,0.00013536635,0.000005600733],"category_scores_gemma":[0.0000067255587,0.00007749249,0.000025018293,0.000011468186,0.0004909717,0.000009996009,0.0003382316,0.000058812064,2.9576483e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00076225266,0.0000510469,0.091878735,0.000041588846,0.00006218056,1.6803384e-7,0.00030695126,1.9268306e-7,0.9046977,0.000009191801,4.4200678e-7,0.0021895377],"study_design_scores_gemma":[0.0017084217,0.0004043079,0.4006,0.000021884904,0.000015582713,0.0000076820115,0.00050385855,0.000009464437,0.5966249,0.000003893191,0.000022537151,0.000077440534],"about_ca_topic_score_codex":0.000022571396,"about_ca_topic_score_gemma":0.000010066908,"teacher_disagreement_score":0.30872124,"about_ca_system_score_codex":0.00001812406,"about_ca_system_score_gemma":0.000006123944,"threshold_uncertainty_score":0.3160052},"labels":[],"label_agreement":null},{"id":"W2296273647","doi":"10.1128/aem.03984-15","title":"Microbial Diversity in the Early <i>In Vivo</i> -Formed Dental Biofilm","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"National Center for Advancing Translational Sciences; National Institute of Dental and Craniofacial Research; Natural Sciences and Engineering Research Council of Canada; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; Government of Canada","keywords":"Biofilm; In vivo; Microbiology; Diversity (politics); Dental plaque; Biology; Bacteria; Biotechnology; Genetics","score_opus":0.010770975603824492,"score_gpt":0.21305273115198745,"score_spread":0.20228175554816297,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2296273647","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978236,0.00014459736,0.00000650328,0.00015778538,0.0001496039,0.0003014824,0.00046774637,0.000010936803,0.00093773304],"genre_scores_gemma":[0.9987553,0.00015495466,0.00002467523,0.00045437415,0.000042191794,0.000019117855,0.00006009881,0.000010406072,0.0004788953],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99870014,0.000133238,0.00022336931,0.00041138064,0.000040392333,0.0004914585],"domain_scores_gemma":[0.99960613,0.000111847985,0.0000450181,0.00019330492,0.0000012235281,0.00004248744],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025166123,0.0001853526,0.00022767007,0.000091824404,0.00018798772,0.000017318025,0.00035561662,0.00025948798,0.0009070932],"category_scores_gemma":[0.00000362198,0.0001163343,0.00005242141,0.000077376484,0.0007493259,0.00007254192,0.00056634913,0.00023671341,0.0005386019],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009902209,0.00007759645,0.32235393,0.0000033541435,0.000008740359,0.000045962854,0.00020705836,6.7281526e-8,0.67566806,0.00012500741,0.00062098505,0.0007902129],"study_design_scores_gemma":[0.004785482,0.00017170969,0.86606663,0.00002371098,0.000013317277,0.00072247745,0.0008265706,2.7761348e-7,0.11027931,0.00032587073,0.016345724,0.00043892983],"about_ca_topic_score_codex":0.00030627425,"about_ca_topic_score_gemma":0.0011470469,"teacher_disagreement_score":0.56538874,"about_ca_system_score_codex":0.000097590404,"about_ca_system_score_gemma":0.00000751709,"threshold_uncertainty_score":0.99320346},"labels":[],"label_agreement":null},{"id":"W2303343820","doi":"10.1128/aem.03306-15","title":"Use of Substrate-Induced Gene Expression in Metagenomic Analysis of an Aromatic Hydrocarbon-Contaminated Soil","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Metagenomics; Biology; Contig; Computational biology; Context (archaeology); Gene; Genetics; Shotgun sequencing; Genomic library; Gene prediction; DNA sequencing; Genome; Peptide sequence","score_opus":0.019366906719915318,"score_gpt":0.20000484225068982,"score_spread":0.1806379355307745,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2303343820","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995946,0.000022575605,0.000008782715,0.0000055902156,0.000024641364,0.00016980105,0.00007829364,0.0000063485754,0.00008932762],"genre_scores_gemma":[0.9989348,0.000030042836,0.00060453935,0.00005219914,0.0000031062257,0.0000035811815,0.0003489858,0.000008368991,0.000014383668],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998955,0.00007719276,0.00039535706,0.00032044956,0.0000621426,0.00018983599],"domain_scores_gemma":[0.9994794,0.000026798061,0.00019685287,0.00020035903,8.5835165e-7,0.00009569652],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001912026,0.00015471957,0.00038406882,0.00011767944,0.000018146951,0.0000049540076,0.00012256943,0.00014030225,0.00018794624],"category_scores_gemma":[0.0000040411423,0.0001339387,0.000045836452,0.00021154234,0.00023239972,0.00008542363,0.00011892072,0.00006834993,0.000020718617],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052500087,0.00016883283,0.0452548,0.000002415858,0.00005254628,0.0000018763008,0.00040235498,0.00058746623,0.9530649,9.978569e-7,0.0000066286834,0.00040468565],"study_design_scores_gemma":[0.0005179318,0.00008404027,0.16259159,0.000002256939,0.00009628086,0.0000035097567,0.00023442211,0.00043987768,0.8358596,0.000013262771,0.000027278698,0.00012997974],"about_ca_topic_score_codex":0.0003297964,"about_ca_topic_score_gemma":0.00030230725,"teacher_disagreement_score":0.11733679,"about_ca_system_score_codex":0.00008014287,"about_ca_system_score_gemma":0.0000058343135,"threshold_uncertainty_score":0.54618615},"labels":[],"label_agreement":null},{"id":"W2330026425","doi":"10.1128/aem.03465-15","title":"Genomic Features of Environmental and Clinical Vibrio parahaemolyticus Isolates Lacking Recognized Virulence Factors Are Dissimilar","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"Health Canada; Government of Canada","keywords":"Vibrio parahaemolyticus; Virulence; Biology; Microbiology; Vibrio Infections; Vibrio; Genetics; Vibrionaceae; Computational biology; Gene; Bacteria","score_opus":0.01677410499337161,"score_gpt":0.24798258213869473,"score_spread":0.2312084771453231,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2330026425","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967842,0.0024389478,0.000008982682,0.0000432256,0.00006468915,0.000227296,0.00035465776,0.0000061251044,0.00007185854],"genre_scores_gemma":[0.9957886,0.003413136,0.0002133325,0.00009848045,0.000063813764,0.000008882433,0.00032932282,0.000021569254,0.00006286567],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988088,0.00007719698,0.00028144327,0.0005011577,0.00004087597,0.0002905091],"domain_scores_gemma":[0.9994715,0.000040662308,0.00014214017,0.00019790017,0.000002406901,0.00014542082],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016249789,0.00023061234,0.00034490068,0.00002800078,0.00007991952,0.000011226038,0.00012647624,0.00021417985,0.000018217037],"category_scores_gemma":[0.000019991725,0.00019521067,0.000060022878,0.000013604125,0.0008932634,0.0000052764426,0.0005522959,0.00013596067,0.000007811182],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017742258,0.0000746941,0.14551197,0.000008257041,0.000108286375,0.0000016042176,0.00009197881,8.1876294e-7,0.8524957,0.0000019886825,0.00012467024,0.0014026146],"study_design_scores_gemma":[0.0019652788,0.000572255,0.7056953,0.000011100377,0.000060206847,0.00006258578,0.0017101577,0.000002764592,0.28432345,0.000055614728,0.0051708384,0.00037044976],"about_ca_topic_score_codex":0.000009630441,"about_ca_topic_score_gemma":0.000009300206,"teacher_disagreement_score":0.5681722,"about_ca_system_score_codex":0.000025920155,"about_ca_system_score_gemma":0.000012121023,"threshold_uncertainty_score":0.796046},"labels":[],"label_agreement":null},{"id":"W2340033216","doi":"10.1128/aem.03741-15","title":"Tolerance of Listeria monocytogenes to Quaternary Ammonium Sanitizers Is Mediated by a Novel Efflux Pump Encoded by emrE","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":140,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; University of Manitoba; University of British Columbia","funders":"ExxonMobil Research and Engineering Company","keywords":"Listeria monocytogenes; Efflux; Benzalkonium chloride; Acriflavine; Microbiology; Tetracycline; Biology; Gentamicin; Chloramphenicol; Chemistry; Biochemistry; Bacteria; Antibiotics; Genetics","score_opus":0.02580584352976907,"score_gpt":0.24477528384690875,"score_spread":0.21896944031713966,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2340033216","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955035,0.0009993837,0.0004432636,0.00013398341,0.00017145701,0.00034390044,0.0021482422,0.000011759821,0.00024450078],"genre_scores_gemma":[0.99457246,0.0002616093,0.0006408818,0.0017458454,0.00006537003,0.00005858701,0.0023691894,0.000039830695,0.00024622673],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99862206,0.000036868947,0.0003480816,0.0005969189,0.000059459595,0.0003366276],"domain_scores_gemma":[0.9993124,0.000012874434,0.00012825665,0.00035155503,0.000007847147,0.00018709149],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00010178579,0.00029660185,0.0003302482,0.00002839852,0.000048386846,0.000010816346,0.00027428337,0.00028392524,0.000029866223],"category_scores_gemma":[0.0000057722996,0.0002938489,0.000053471882,0.000041499316,0.00030859082,0.000004914482,0.00047904582,0.00006591251,0.00002997125],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000539104,0.00011431087,0.002323892,0.000013137007,0.00007584549,6.8203065e-7,0.00022205453,0.0000110001465,0.9896281,0.000003254301,0.006791295,0.00027735022],"study_design_scores_gemma":[0.0014994217,0.00039845804,0.00018914291,0.000005156748,0.000020285283,0.00004202691,0.00028802082,0.000007411192,0.9249197,0.0000066365237,0.07231767,0.0003060464],"about_ca_topic_score_codex":0.000057322202,"about_ca_topic_score_gemma":0.000005409215,"teacher_disagreement_score":0.06552637,"about_ca_system_score_codex":0.000045514105,"about_ca_system_score_gemma":0.000021094322,"threshold_uncertainty_score":0.99995136},"labels":[],"label_agreement":null},{"id":"W2340172603","doi":"10.1128/aem.03821-15","title":"Global Genomic Epidemiology of Salmonella enterica Serovar Typhimurium DT104","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":122,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Wellcome Trust","keywords":"Salmonella enterica; Serotype; Salmonella; Microbiology; Biology; Enterobacteriaceae; Epidemiology; Virology; Genetics; Bacteria; Gene; Escherichia coli; Medicine","score_opus":0.012599019146558161,"score_gpt":0.1938061288813828,"score_spread":0.18120710973482462,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2340172603","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972883,0.0007383418,0.00003909898,0.00071688805,0.00012165827,0.00015718317,0.0004152681,0.000028071634,0.00049522746],"genre_scores_gemma":[0.9977636,0.0007410011,0.00019033458,0.00094938214,0.00011620724,0.000014703997,0.00014982389,0.0000018750598,0.000073091316],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99836,0.00017644446,0.00044610025,0.00052406214,0.000023426863,0.0004699954],"domain_scores_gemma":[0.99908495,0.0004967111,0.00020109907,0.00010249553,0.000003231841,0.000111487105],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002708868,0.00022755234,0.00051050173,0.000009672191,0.000071826,0.0000015301515,0.00022697554,0.00026125304,0.0004954395],"category_scores_gemma":[0.000017421562,0.00008368592,0.00009709627,0.00005799486,0.0006066629,0.0000236374,0.00024262632,0.000058652084,0.00012405595],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000056989596,0.000044319655,0.28218886,0.000002291858,0.00002378175,0.0000010037423,0.000007190972,4.1028778e-7,0.69680125,0.00048943906,0.00020484447,0.020179618],"study_design_scores_gemma":[0.0004365673,0.00032536837,0.97066563,0.0000075041567,0.000022892591,0.00014467756,0.00010055172,0.0000013022895,0.006236076,0.0031123862,0.018684352,0.00026270264],"about_ca_topic_score_codex":0.00006376728,"about_ca_topic_score_gemma":0.000020907686,"teacher_disagreement_score":0.69056517,"about_ca_system_score_codex":0.000054231565,"about_ca_system_score_gemma":0.0000031837812,"threshold_uncertainty_score":0.5424715},"labels":[],"label_agreement":null},{"id":"W2342037152","doi":"10.1128/aem.03595-15","title":"Identification of Unknown Carboxydovore Bacteria Dominant in Deciduous Forest Soil via Succession of Bacterial Communities, <i>coxL</i> Genotypes, and Carbon Monoxide Oxidation Activity in Soil Microcosms","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Microcosm; Ecological succession; Deciduous; Carbon monoxide; Soil microbiology; Ecology; Bacteria; Biology; Soil water; Environmental chemistry; Chemistry; Biochemistry","score_opus":0.006833158681466626,"score_gpt":0.18940234760354668,"score_spread":0.18256918892208004,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2342037152","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99932826,0.00007865991,0.000019940939,0.000018789364,0.00008150734,0.0003197714,0.000044246877,0.000004354061,0.00010444859],"genre_scores_gemma":[0.9992172,0.00018289546,0.00007003709,0.000026180964,0.000010069266,0.000019376648,0.00045000116,0.000012798319,0.000011414443],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987412,0.00028310798,0.00043836207,0.00025441736,0.000036611644,0.0002462931],"domain_scores_gemma":[0.9993271,0.00008954168,0.0002662691,0.0002604408,0.0000025340246,0.000054099935],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039917728,0.00019351087,0.0003958663,0.00007704181,0.000055166114,0.0000048642128,0.00020039378,0.0002669138,0.000071654016],"category_scores_gemma":[0.000004177299,0.00019253837,0.00002217107,0.00008346473,0.0007804286,0.00008264631,0.00047042195,0.00022087738,0.000004976954],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041932403,0.00022548939,0.06202282,0.000018609564,0.00000820702,8.708465e-7,0.0014498401,0.0002091894,0.9340755,0.000011838565,0.0000105235895,0.0015477856],"study_design_scores_gemma":[0.0020066025,0.0002002553,0.29917747,0.000017819599,0.000020062836,0.000033101485,0.00058837864,0.00021510865,0.6966654,0.00056642486,0.00025380697,0.00025559345],"about_ca_topic_score_codex":0.006468857,"about_ca_topic_score_gemma":0.0281984,"teacher_disagreement_score":0.23741011,"about_ca_system_score_codex":0.00017530425,"about_ca_system_score_gemma":0.000018115132,"threshold_uncertainty_score":0.98953444},"labels":[],"label_agreement":null},{"id":"W2342146826","doi":"10.1128/aem.02983-15","title":"Biofilm-Forming Abilities of Shiga Toxin-Producing Escherichia coli Isolates Associated with Human Infections","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biofilm; Microbiology; Escherichia coli; Biology; Shiga toxin; Fimbria; Bacteria; Gene; Biochemistry; Genetics","score_opus":0.01089343571676835,"score_gpt":0.22058764574224876,"score_spread":0.20969421002548042,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2342146826","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983621,0.00044434838,0.000028683375,0.000031147305,0.000026290489,0.00021156849,0.000050344912,0.000011831459,0.00083365245],"genre_scores_gemma":[0.99901766,0.000098415774,0.00023803794,0.00008198404,0.000039440223,0.000043258402,0.00025514976,0.000018244042,0.00020780032],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991596,0.000044296878,0.00017146603,0.00032156298,0.000037294296,0.00026580473],"domain_scores_gemma":[0.99963534,0.000022766324,0.00008576689,0.00017564843,0.000011479468,0.00006901008],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017998798,0.00016354384,0.00020749295,0.00003212499,0.0001365314,0.0000079526935,0.00008613502,0.00012787331,0.0000109849125],"category_scores_gemma":[0.000030299569,0.00013909077,0.000029515013,0.0000521287,0.00059821934,0.0000045253933,0.00023102712,0.00010843415,0.000002459587],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037222337,0.000121075005,0.026717942,0.000011729802,0.00012448069,4.4365052e-7,0.00026271495,0.000019955249,0.9724366,0.000058892652,0.0001346508,0.00007430832],"study_design_scores_gemma":[0.0018478746,0.0020901952,0.03201075,0.000023156997,0.00005833835,0.000024955605,0.0035701238,0.000010606412,0.95479083,0.00016739951,0.004930104,0.00047567685],"about_ca_topic_score_codex":0.000049168873,"about_ca_topic_score_gemma":0.00008123432,"teacher_disagreement_score":0.017645763,"about_ca_system_score_codex":0.000037484915,"about_ca_system_score_gemma":0.00002692487,"threshold_uncertainty_score":0.5671957},"labels":[],"label_agreement":null},{"id":"W2345321591","doi":"10.1128/aem.02266-15","title":"The Microbiota of Freshwater Fish and Freshwater Niches Contain Omega-3 Fatty Acid-Producing Shewanella Species","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Environmental Health Sciences; Concordia University","keywords":"Biology; Ecological niche; Freshwater fish; Shewanella; Microbiology; Bacteria; Omega; Niche; Zoology; Ecology; Fish <Actinopterygii>; Aeromonas; Fishery; Genetics; Habitat","score_opus":0.009494209392316927,"score_gpt":0.178711778140848,"score_spread":0.16921756874853106,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2345321591","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9918355,0.0052315374,0.000020337218,0.0007038709,0.0002988119,0.00046663487,0.00082001986,0.00003439807,0.0005888857],"genre_scores_gemma":[0.99411726,0.00047071904,0.00014859317,0.0007035697,0.000044926917,0.000022496326,0.0013411903,0.000026886084,0.0031243516],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983542,0.00011398425,0.00039664467,0.0005824992,0.000023202032,0.0005294878],"domain_scores_gemma":[0.9993382,0.00007208421,0.00015752336,0.000361592,0.0000107603955,0.000059823808],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029788676,0.0003577349,0.000422022,0.00006182615,0.0003073296,0.000036749512,0.00027812124,0.00027767548,0.00014939683],"category_scores_gemma":[0.000010853463,0.00024026174,0.000073914656,0.00004797783,0.0016895593,0.000053058895,0.0005760807,0.0002412087,0.00010432441],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022267106,0.00007529651,0.0023401736,0.000021972577,0.00023351253,0.0000032198525,0.0010273258,0.0000015557204,0.9674302,0.00038259118,0.02747197,0.0007895393],"study_design_scores_gemma":[0.0018412074,0.00013687107,0.0016890762,0.000011986735,0.00009919315,0.00009839427,0.0033771344,8.5304606e-7,0.58543724,0.00015118929,0.4068467,0.0003101737],"about_ca_topic_score_codex":0.000067329674,"about_ca_topic_score_gemma":0.00034850984,"teacher_disagreement_score":0.38199294,"about_ca_system_score_codex":0.00004461019,"about_ca_system_score_gemma":0.000014393583,"threshold_uncertainty_score":0.9797589},"labels":[],"label_agreement":null},{"id":"W2346723388","doi":"10.1128/aem.00599-16","title":"Implications of Limited Thermophilicity of Nitrite Reduction for Control of Sulfide Production in Oil Reservoirs","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Nitrite; Nitrate; Mesophile; Chemistry; Ammonia; Food science; Sulfide; Microbiology; Bacteria; Biochemistry; Biology; Organic chemistry","score_opus":0.007840412148942663,"score_gpt":0.19153146117814043,"score_spread":0.18369104902919778,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2346723388","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986351,0.000023678538,0.00006268915,0.0004765294,0.00003329428,0.00025155678,0.00031949248,0.0000037447194,0.00019391708],"genre_scores_gemma":[0.99937856,0.00025368074,0.00022622869,0.000019873292,0.000010568881,0.000015321482,0.00004421827,0.000005694304,0.000045864494],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992703,0.000028910486,0.00032286017,0.00022431633,0.000029239198,0.00012434508],"domain_scores_gemma":[0.9995804,0.000046439585,0.00020560836,0.00014134975,0.0000031722848,0.000023073788],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017376851,0.00008367764,0.00018456175,0.000042256932,0.000024408819,6.363377e-7,0.00008025184,0.00008952868,0.00015678712],"category_scores_gemma":[0.000014208208,0.00006137797,0.000032788892,0.00007477295,0.00049732433,0.000035968682,0.000045829656,0.000029371668,0.00000480213],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016961066,0.00012565464,0.032754406,0.000012497598,0.00000873398,1.2438558e-8,0.00007995308,0.0000131916295,0.95761853,0.000060354436,0.000053559685,0.009103504],"study_design_scores_gemma":[0.0011415455,0.00008269471,0.11958088,0.000010699891,0.000011611919,0.0000038595253,0.000098880184,0.0000017746922,0.8782818,0.00035825727,0.0003524641,0.0000755906],"about_ca_topic_score_codex":0.00003258178,"about_ca_topic_score_gemma":0.000027966063,"teacher_disagreement_score":0.08682647,"about_ca_system_score_codex":0.00005089371,"about_ca_system_score_gemma":0.0000030712424,"threshold_uncertainty_score":0.2502921},"labels":[],"label_agreement":null},{"id":"W2367354149","doi":"10.1128/aem.00134-16","title":"Gene Expression Patterns of Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium Are Influenced by Wood Substrate Composition during Degradation","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Phanerochaete; Chrysosporium; Biology; Botany; Gene; Gene expression; Populus trichocarpa; Genome; Lignin; Biochemistry","score_opus":0.00303515078095345,"score_gpt":0.1504442483798739,"score_spread":0.14740909759892046,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2367354149","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987148,0.0004933048,0.00023585756,0.000039579914,0.00007902361,0.00014816865,0.00024502404,0.000035992944,0.000008245184],"genre_scores_gemma":[0.99829733,0.0012489218,0.000073902374,0.000025788757,0.000024167157,0.0000068542663,0.00028883593,0.000012867912,0.000021349842],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994205,0.000012180812,0.00015616005,0.00023145715,0.000028164744,0.0001515321],"domain_scores_gemma":[0.99979144,0.000008758994,0.00006015998,0.00008979399,0.0000018559534,0.000048013288],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000028257666,0.00014221558,0.00013300152,0.000036789777,0.000053790543,0.000005092983,0.000042961587,0.00012096669,0.00004097494],"category_scores_gemma":[1.922883e-7,0.00011148827,0.000014603455,0.000017128168,0.000081077225,0.000068434754,0.00004793815,0.00005674706,0.0000073386764],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052221843,0.000023561819,0.006759754,0.00005648485,0.000014781964,6.38023e-7,0.000051569736,0.0000070198885,0.9924231,0.0000012425484,0.000028024062,0.00058157166],"study_design_scores_gemma":[0.00094743085,0.000031787695,0.017947976,0.000030231822,0.000011924067,0.000037979535,0.00011398795,0.0000032603084,0.980578,0.0000028574486,0.00014994224,0.00014460512],"about_ca_topic_score_codex":0.0000026680852,"about_ca_topic_score_gemma":5.975993e-7,"teacher_disagreement_score":0.011845112,"about_ca_system_score_codex":0.000035043115,"about_ca_system_score_gemma":0.000001003026,"threshold_uncertainty_score":0.45463595},"labels":[],"label_agreement":null},{"id":"W2396718509","doi":"10.1128/aem.00231-16","title":"Novel <i>P450nor</i> Gene Detection Assay Used To Characterize the Prevalence and Diversity of Soil Fungal Denitrifiers","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; Agriculture and Agri-Food Canada; Université de Moncton","funders":"Agriculture and Agri-Food Canada; Government of Canada","keywords":"Denitrifying bacteria; Biology; Microbiology; Soil microbiology; Gene; Denitrification; Genetics; Bacteria; Chemistry; Nitrogen","score_opus":0.009080054266709424,"score_gpt":0.16178803352384308,"score_spread":0.15270797925713364,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2396718509","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990848,0.000028618424,0.00029053257,0.00010119736,0.00004105231,0.00024901325,0.00015538245,0.000009584814,0.00003986126],"genre_scores_gemma":[0.99929565,0.00007825087,0.00027405174,0.00012525512,0.000016132984,0.000012858134,0.0000100971365,0.000007804559,0.0001799036],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99924076,0.00003314085,0.00012752271,0.00032384694,0.000056128763,0.00021861115],"domain_scores_gemma":[0.9996656,0.000052509786,0.00006155567,0.00014459026,7.326213e-7,0.000074999865],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012873257,0.00014770358,0.00013910544,0.000017950477,0.00020433805,0.000005894717,0.00012931925,0.00007748452,0.00014286669],"category_scores_gemma":[0.0000022021286,0.000087539614,0.000027348446,0.000042691463,0.00047675218,0.00005555887,0.00060278905,0.000047978443,0.00006703259],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000068750815,0.000047874924,0.05905812,0.0000047986596,0.000020163036,0.0000010083155,0.00024645202,0.0000012620726,0.9367323,0.0000021985368,0.000010431539,0.003806648],"study_design_scores_gemma":[0.0006402629,0.00008533816,0.2283938,0.0000035845446,0.000034790137,0.0000689872,0.000044710378,0.00000161685,0.7703258,0.000014987771,0.0002707976,0.00011533207],"about_ca_topic_score_codex":0.00007842393,"about_ca_topic_score_gemma":0.000034791643,"teacher_disagreement_score":0.16933566,"about_ca_system_score_codex":0.00006191294,"about_ca_system_score_gemma":0.0000015927993,"threshold_uncertainty_score":0.35697618},"labels":[],"label_agreement":null},{"id":"W2398691949","doi":"10.1128/aem.00798-16","title":"Detection of Antibiotic Resistance Genes in Source and Drinking Water Samples from a First Nations Community in Canada","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":141,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Antibiotic resistance; Antibiotics; Resistance (ecology); Gene; Biology; Microbiology; Environmental health; Biotechnology; Genetics; Ecology; Medicine","score_opus":0.010043768329025355,"score_gpt":0.18644025195201214,"score_spread":0.1763964836229868,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2398691949","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99931073,0.00012182833,0.000052724503,0.00013239424,0.000018885454,0.000120149176,0.000053034073,0.0000035257892,0.00018673798],"genre_scores_gemma":[0.99924904,0.000495293,0.0000860275,0.00010847399,0.000004432546,0.0000023226798,0.000021231446,0.000008007203,0.000025172158],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992321,0.000060321145,0.00020081343,0.00021986564,0.00004275702,0.00024410266],"domain_scores_gemma":[0.9996124,0.00018301648,0.000039739618,0.00010810584,1.7501266e-7,0.00005656298],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009283249,0.00012517288,0.00016658832,0.000031161526,0.000117458476,0.0000035199962,0.00008734816,0.000056521356,0.00014111],"category_scores_gemma":[0.0000047095955,0.000086469205,0.000010635259,0.00003983349,0.00043985737,0.000054835637,0.0002643961,0.00010550451,0.0000107975175],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015962392,0.00004401631,0.2801833,0.0000061381984,0.000003662072,0.0000012655926,0.00015290076,0.000027767866,0.7159672,0.0000030750957,0.0000014891249,0.0035932628],"study_design_scores_gemma":[0.00055147515,0.000014396011,0.51695645,0.00003143619,0.000005153508,0.000004979068,0.0003433764,0.000009922273,0.4807753,0.00012151474,0.0010658152,0.000120153796],"about_ca_topic_score_codex":0.23296437,"about_ca_topic_score_gemma":0.8686307,"teacher_disagreement_score":0.6356663,"about_ca_system_score_codex":0.00029648672,"about_ca_system_score_gemma":0.0000037518907,"threshold_uncertainty_score":0.7721434},"labels":[],"label_agreement":null},{"id":"W2402546756","doi":"10.1128/aem.00611-16","title":"Genome Evolution and Nitrogen Fixation in Bacterial Ectosymbionts of a Protist Inhabiting Wood-Feeding Cockroaches","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria; University of British Columbia; Canadian Institute for Advanced Research","funders":"","keywords":"Biology; Symbiosis; Nitrogen fixation; Protist; Genome; Evolutionary biology; Gene; Genetics; Bacteria","score_opus":0.006864907102588103,"score_gpt":0.15842893548158335,"score_spread":0.15156402837899524,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2402546756","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9994611,0.000062647225,0.0000010660902,0.00007952503,0.000030673506,0.00019825295,0.00010159536,0.0000061069436,0.000059006838],"genre_scores_gemma":[0.99971735,0.00005254548,0.000031221614,0.000020270081,0.00007184895,0.00001734635,0.0000836514,8.2253905e-7,0.000004964679],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993857,0.000030271265,0.00019089252,0.00021225125,0.00002134868,0.00015953195],"domain_scores_gemma":[0.999813,0.00004623973,0.00009326442,0.000019733741,0.0000019235051,0.00002582948],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010726874,0.00009608935,0.0001503631,0.00001370719,0.00007001641,0.000009824416,0.000048471935,0.000096564225,0.00011212267],"category_scores_gemma":[0.0000043871687,0.000038273847,0.000017086815,0.00003467688,0.00017855412,0.000058728263,0.000072684255,0.000031270847,0.0000041081976],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039573857,0.00002858139,0.057747003,0.000004052998,0.000004721068,1.8412572e-7,0.000057170313,3.8001275e-8,0.93799967,0.00008991659,5.413364e-7,0.004028528],"study_design_scores_gemma":[0.00035470934,0.00015620142,0.7492424,0.000019474246,0.000005000558,0.000014043555,0.00023811814,4.1720094e-7,0.24930023,0.0003973623,0.00015150961,0.00012053652],"about_ca_topic_score_codex":0.00009069178,"about_ca_topic_score_gemma":0.000071915616,"teacher_disagreement_score":0.6914954,"about_ca_system_score_codex":0.000031819734,"about_ca_system_score_gemma":0.0000016479005,"threshold_uncertainty_score":0.15607622},"labels":[],"label_agreement":null},{"id":"W2412203872","doi":"10.1128/aem.00139-16","title":"The Chthonomonas calidirosea Genome Is Highly Conserved across Geographic Locations and Distinct Chemical and Microbial Environments in New Zealand's Taupō Volcanic Zone","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Biology; Genome; Biological dispersal; Evolutionary biology; Genetics; Genome size; Population; Gene","score_opus":0.004271438088440574,"score_gpt":0.1804548050764337,"score_spread":0.1761833669879931,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2412203872","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952867,0.0033496711,0.000034028035,0.0007243051,0.00003554509,0.00022591955,0.00032947309,0.000001904271,0.000012433977],"genre_scores_gemma":[0.99210876,0.0067652552,0.00007162196,0.00031233227,0.00006322824,0.000026609987,0.0001236882,0.000017980468,0.0005105475],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99886256,0.000027867796,0.00021984526,0.00050474424,0.000023994491,0.00036097754],"domain_scores_gemma":[0.99958706,0.000039482402,0.00006605885,0.00020398818,0.0000013306714,0.00010209707],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000971844,0.00022025406,0.00019364142,0.000015849455,0.00018406237,0.000018923567,0.00011387073,0.0001639139,0.00000688059],"category_scores_gemma":[0.0000027825079,0.00015217137,0.000032260832,0.000019165085,0.0009329162,0.0000013579761,0.00040611697,0.00006883099,0.000005778766],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006220446,0.00003528702,0.042095695,0.0000026719558,0.000053495838,7.1140283e-7,0.00009385237,2.3783477e-7,0.9548115,0.000017809292,0.00013073339,0.0026957665],"study_design_scores_gemma":[0.0033756734,0.00022592754,0.47380868,0.000008118935,0.00004218516,0.00012530395,0.0002920439,0.0000013420623,0.2698721,0.00019530678,0.25152656,0.0005267846],"about_ca_topic_score_codex":0.00009424462,"about_ca_topic_score_gemma":0.0001910071,"teacher_disagreement_score":0.68493944,"about_ca_system_score_codex":0.000019883779,"about_ca_system_score_gemma":0.000012871825,"threshold_uncertainty_score":0.6205368},"labels":[],"label_agreement":null},{"id":"W2414548336","doi":"10.1128/aem.01346-16","title":"A Modular, Tn <i>7</i> -Based System for Making Bioluminescent or Fluorescent Salmonella and Escherichia coli Strains","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Cancer Research and Treatments","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Population Health Research Institute; University of Calgary; University of Saskatchewan","funders":"","keywords":"Bioluminescence; Salmonella; Escherichia coli; Microbiology; Enterobacteriaceae; Fluorescence; Biology; Bacteria; Chemistry; Biochemistry; Genetics; Gene; Physics","score_opus":0.00846915665487532,"score_gpt":0.21871826136029854,"score_spread":0.2102491047054232,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2414548336","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99667126,0.0005991987,0.0013291874,0.000101240395,0.00004566119,0.0005885066,0.0006113643,0.000011168629,0.00004240479],"genre_scores_gemma":[0.9982046,0.00033236152,0.00065422157,0.00018486977,0.00006761554,0.00014947791,0.00029569544,0.000024511446,0.00008664731],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990189,0.000022386424,0.00014195716,0.00045513644,0.000029774832,0.00033184944],"domain_scores_gemma":[0.9996732,0.000014471246,0.000049980295,0.00016704944,0.000003323747,0.00009197164],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000059715123,0.00018630947,0.00017065753,0.000023320401,0.00010215086,0.000012672808,0.00007419916,0.00012988574,0.000011680901],"category_scores_gemma":[0.0000027951162,0.00012269018,0.00004176715,0.000017808146,0.000248701,0.0000019244937,0.000108346234,0.00003198168,0.000005805275],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005209058,0.000084654734,0.0019174672,0.000050508323,0.00007080163,0.000003795323,0.0000088289335,0.0000014176328,0.9915781,0.000033916025,0.00016541319,0.005564213],"study_design_scores_gemma":[0.0054933773,0.0008285855,0.00413609,0.00004880502,0.000042882668,0.00005470709,0.00015087351,0.000027931186,0.96068114,0.000011324983,0.028184772,0.000339515],"about_ca_topic_score_codex":0.000010678245,"about_ca_topic_score_gemma":0.000028028928,"teacher_disagreement_score":0.030896943,"about_ca_system_score_codex":0.000057510897,"about_ca_system_score_gemma":0.000024080677,"threshold_uncertainty_score":0.500316},"labels":[],"label_agreement":null},{"id":"W2416874763","doi":"10.1128/aem.01159-16","title":"Development of a CRISPR-Cas9 Tool Kit for Comprehensive Engineering of Bacillus subtilis","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":201,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"CRISPR; Cas9; Biology; Trans-activating crRNA; Bacillus subtilis; CRISPR interference; Guide RNA; Genome editing; Genome engineering; Plasmid; Computational biology; Genetics; RNA polymerase III; Transcription (linguistics); Gene; RNA; RNA polymerase","score_opus":0.006467555077786699,"score_gpt":0.21523012203068198,"score_spread":0.20876256695289527,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2416874763","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96855426,0.00043889886,0.030657548,0.000008558081,0.000040097537,0.0001680269,0.000109013956,0.0000042981615,0.000019298026],"genre_scores_gemma":[0.989955,0.000119674776,0.009719893,0.00001993304,0.000023430617,0.000026053907,0.00009533698,0.000013004985,0.000027651227],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994294,0.000003322566,0.00020185656,0.00019644023,0.000017614984,0.0001513774],"domain_scores_gemma":[0.99978936,0.000018475448,0.00004624738,0.00011544973,0.0000044574613,0.000026038859],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000036478985,0.00011595029,0.00016076774,0.000023390709,0.000018567698,9.762313e-7,0.000062019615,0.000093992916,0.000010959735],"category_scores_gemma":[0.0000034498535,0.000093168834,0.000038402646,0.000011603087,0.00008285546,0.0000010124113,0.00008971648,0.000018533497,0.0000014425704],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043419815,0.000022184584,0.00020590627,0.000041477633,0.00005061158,1.00882225e-7,0.00006669549,0.000033325425,0.9918249,0.000039786057,0.00005305111,0.0076185195],"study_design_scores_gemma":[0.000671973,0.00008135969,0.0022266968,0.0000088181505,0.000010368467,0.000009368628,0.00008006428,0.000007773962,0.9591007,0.000003863051,0.037676748,0.00012222018],"about_ca_topic_score_codex":6.406798e-7,"about_ca_topic_score_gemma":9.314861e-7,"teacher_disagreement_score":0.037623696,"about_ca_system_score_codex":0.000008858578,"about_ca_system_score_gemma":0.000008100135,"threshold_uncertainty_score":0.37993148},"labels":[],"label_agreement":null},{"id":"W2428140166","doi":"10.1128/aem.00953-16","title":"Insights into Symbiont Population Structure among Three Vestimentiferan Tubeworm Host Species at Eastern Pacific Spreading Centers","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Marine Biology and Ecology Research","field":"Earth and Planetary Sciences","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"","keywords":"Biology; Hydrothermal vent; Gammaproteobacteria; Holobiont; Phylotype; Genome; Extremophile; Host (biology); Population; Evolutionary biology; Ecology; Symbiosis; Phylogenetics; Zoology; Gene; Genetics; 16S ribosomal RNA; Paleontology; Bacteria; Microorganism","score_opus":0.0051414500958511244,"score_gpt":0.1607675886749715,"score_spread":0.1556261385791204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2428140166","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998414,0.00017367046,0.0000094206525,0.00013070909,0.00020584161,0.00020412878,0.00007288327,0.000017946673,0.0007713998],"genre_scores_gemma":[0.99804485,0.00009481448,0.000034759883,0.000067156885,0.00006279175,0.0000024863248,0.0010275443,0.000004672321,0.00066092354],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99900043,0.00004553411,0.00017487117,0.00041116227,0.000039136987,0.0003288888],"domain_scores_gemma":[0.99962157,0.00007382632,0.000058625556,0.00014341676,0.0000014601709,0.000101124366],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00005674078,0.0001793863,0.0001908802,0.000065478314,0.00031196277,0.00001402546,0.00012816678,0.00020971912,0.002654061],"category_scores_gemma":[0.0000026953169,0.000114969574,0.000028867265,0.00002939492,0.0005997481,0.000079758705,0.00009629333,0.000109189554,0.00027210353],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006224102,0.0000073937963,0.7313485,0.000004321326,0.00002421565,0.0000030625426,0.00006998879,0.0000020595037,0.26586932,0.000032192114,0.000043764918,0.0025328975],"study_design_scores_gemma":[0.0004104793,0.00009519047,0.9933439,0.0000067144138,0.000009738628,0.000022819313,0.000079176585,0.000029126319,0.0039723534,0.00041975427,0.0014467656,0.00016397465],"about_ca_topic_score_codex":0.00021319688,"about_ca_topic_score_gemma":0.0051338086,"teacher_disagreement_score":0.26199538,"about_ca_system_score_codex":0.000031058928,"about_ca_system_score_gemma":0.0000031396626,"threshold_uncertainty_score":0.99825764},"labels":[],"label_agreement":null},{"id":"W2463500010","doi":"10.1128/aem.01327-16","title":"A Diverse Soil Microbiome Degrades More Crude Oil than Specialized Bacterial Assemblages Obtained in Culture","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique; National Research Council Canada; Espace pour la vie; Canadian Forest Service; Université de Montréal; Natural Resources Canada","funders":"","keywords":"Microbiome; Biology; Metagenomics; Soil microbiology; Soil bacteria; Microbiological culture; Crude oil; Bacteria; Ecology; Biotechnology; Soil water; Bioinformatics; Petroleum engineering; Genetics; Engineering","score_opus":0.005860330714556526,"score_gpt":0.18826908353963703,"score_spread":0.1824087528250805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2463500010","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99797887,0.0000449805,0.000007529786,0.00036700116,0.00017800936,0.00016849721,0.00028793403,0.00003409773,0.0009330556],"genre_scores_gemma":[0.9968568,0.00064795214,0.00023820478,0.00045244646,0.00009014144,0.000012179531,0.00023131169,0.000020594971,0.0014503858],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984238,0.000067371584,0.00031745317,0.0006234416,0.000069662965,0.000498257],"domain_scores_gemma":[0.9995213,0.00003343807,0.00011889127,0.00019893436,0.0000010191634,0.00012643055],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00012999044,0.0003234378,0.0003165446,0.000057461813,0.00011173229,0.00002379896,0.00023548103,0.00028562587,0.0031460985],"category_scores_gemma":[0.0000066350176,0.00021874436,0.00006663944,0.000100622405,0.0007428259,0.0001071726,0.00036904775,0.00011222545,0.0007325031],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012440668,0.00012452037,0.020235889,0.000004660029,0.000014315727,0.000011079241,0.00037843568,6.6591826e-7,0.97034687,0.000012970796,0.0018469782,0.0068991985],"study_design_scores_gemma":[0.005303502,0.00012367628,0.12240819,0.000030224117,0.000030421876,0.00008178795,0.0009268411,0.0000010846384,0.8012659,0.000063628686,0.06894753,0.0008172098],"about_ca_topic_score_codex":0.00006794929,"about_ca_topic_score_gemma":0.0003521958,"teacher_disagreement_score":0.16908097,"about_ca_system_score_codex":0.00023032006,"about_ca_system_score_gemma":0.00000655057,"threshold_uncertainty_score":0.9977652},"labels":[],"label_agreement":null},{"id":"W2466804897","doi":"10.1128/aem.00143-16","title":"Evidence of Naturalized Stress-Tolerant Strains of Escherichia coli in Municipal Wastewater Treatment Plants","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; Agriculture and Agri-Food Canada; Environment and Climate Change Canada; University of Alberta","funders":"","keywords":"Biology; Escherichia coli; Sewage; Microbiology; Wastewater; Virulence; Intergenic region; Genetics; Gene; Genome","score_opus":0.015475708471856168,"score_gpt":0.24288478530712648,"score_spread":0.2274090768352703,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2466804897","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974436,0.0019817231,0.0000035972162,0.000051435425,0.000019793617,0.00022847467,0.0001991143,0.0000019267877,0.000070347494],"genre_scores_gemma":[0.99447274,0.0051542134,0.00014179297,0.00001974117,0.000014710377,0.00003427569,0.000056014906,0.000009386241,0.00009712339],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991863,0.000057008318,0.00022021442,0.00026793536,0.000035782847,0.00023278136],"domain_scores_gemma":[0.9996627,0.00003646238,0.00007623694,0.00018520483,0.0000026891528,0.000036733185],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000734188,0.00014801316,0.00025612087,0.000030416531,0.0000225081,0.0000015295861,0.00011126878,0.000117179916,0.000028141447],"category_scores_gemma":[0.0000071394147,0.00009443085,0.00003947899,0.000021026595,0.0004567377,0.0000029110313,0.00018487153,0.000042106796,0.0000019361378],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030304142,0.00013457771,0.012503896,0.00002063232,0.000075018324,0.0000017389347,0.0002042993,0.0000049252135,0.9858248,0.000012282905,0.000006558935,0.00090821844],"study_design_scores_gemma":[0.0015602215,0.0005747999,0.033342697,0.00006086333,0.000009480971,0.000004360648,0.00040244794,0.000003085841,0.9633894,0.000011238217,0.0005203351,0.000121049336],"about_ca_topic_score_codex":0.00005196597,"about_ca_topic_score_gemma":0.00009952975,"teacher_disagreement_score":0.02243539,"about_ca_system_score_codex":0.0000271862,"about_ca_system_score_gemma":0.000014638286,"threshold_uncertainty_score":0.3850778},"labels":[],"label_agreement":null},{"id":"W2469206596","doi":"10.1128/aem.01354-16","title":"Disruption of the Reductive 1,3-Propanediol Pathway Triggers Production of 1,2-Propanediol for Sustained Glycerol Fermentation by Clostridium pasteurianum","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University of Waterloo","funders":"Networks of Centres of Excellence of Canada; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"1,3-Propanediol; Glycerol; Metabolite; Fermentation; Butanol; Chemistry; Biodiesel; Metabolic engineering; Biochemistry; Propanediol; Biodiesel production; Ethanol; Food science; Organic chemistry; Enzyme; Catalysis","score_opus":0.0026357435430884655,"score_gpt":0.1687971416510527,"score_spread":0.16616139810796424,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2469206596","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99739015,0.00021089066,0.00087042846,0.00020908003,0.00037104663,0.0006884141,0.00024431202,0.000005549175,0.000010101937],"genre_scores_gemma":[0.99854,0.00027866027,0.00015950199,0.000016129614,0.00020227415,0.00005876268,0.0003028795,0.00001552479,0.00042630392],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991825,0.000037373436,0.00024096145,0.00034356004,0.000033535565,0.00016206499],"domain_scores_gemma":[0.9995903,0.000004732669,0.00017441805,0.00019358435,0.000013350716,0.000023664401],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012661064,0.00014239569,0.00016681856,0.000025305937,0.000055206478,0.0000019556728,0.00008124557,0.00013080926,0.0000052841688],"category_scores_gemma":[0.000018960814,0.00008925663,0.00006163225,0.000039416253,0.00029124785,0.0000052756523,0.000054170687,0.000037440397,6.726414e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000321841,0.000066920235,0.00016486527,0.000038205268,0.000037710015,1.7889548e-8,0.000053729495,0.00000694363,0.9931253,0.00004232692,0.00025578385,0.0058863442],"study_design_scores_gemma":[0.00085918256,0.00027126796,0.00039474582,0.000010840924,0.000031022635,0.000019669209,0.0003327675,4.802971e-7,0.99265474,0.00003094576,0.005280604,0.000113755676],"about_ca_topic_score_codex":0.0000031420252,"about_ca_topic_score_gemma":5.088942e-7,"teacher_disagreement_score":0.0057725883,"about_ca_system_score_codex":0.000024666697,"about_ca_system_score_gemma":0.000013244851,"threshold_uncertainty_score":0.36397797},"labels":[],"label_agreement":null},{"id":"W2469501798","doi":"10.1128/aem.01594-16","title":"Yersinia enterocolitica-Specific Infection by Bacteriophages TG1 and ϕR1-RT Is Dependent on Temperature-Regulated Expression of the Phage Host Receptor OmpF","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; University of Guelph","funders":"Academy of Finland","keywords":"Biology; Lytic cycle; Bacteriophage; Yersinia enterocolitica; Genome; Siphoviridae; Myoviridae; Phage display; Microbiology; Gene; Genetics; Virology; Escherichia coli; Bacteria; Virus; Antibody","score_opus":0.0028872353472769916,"score_gpt":0.16812292727918204,"score_spread":0.16523569193190504,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2469501798","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983286,0.000067181456,0.0000102184495,0.00030018942,0.0002057107,0.0003251211,0.00051095145,0.000014415398,0.00023759656],"genre_scores_gemma":[0.99795884,0.0006237838,0.00004467136,0.00042114418,0.000026580296,0.000022387327,0.000049617112,0.000018194889,0.0008347716],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99896425,0.000054782788,0.00022675355,0.0004505151,0.00005127063,0.00025240413],"domain_scores_gemma":[0.99954075,0.000039740284,0.000112888,0.00023081676,0.0000012463876,0.00007458867],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00005088672,0.00021833056,0.0001900756,0.000023695951,0.00019223693,0.000019459469,0.000114664996,0.00016820984,0.0024130978],"category_scores_gemma":[0.0000015583549,0.00013347188,0.00005091966,0.00003807491,0.00059458264,0.00009267897,0.0002709227,0.00013201397,0.00013560457],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006742286,0.0001256497,0.002180423,0.000004464409,0.000012251981,3.332975e-7,0.0001339883,2.6684205e-7,0.99115527,0.0000073404544,0.0044090045,0.0019035602],"study_design_scores_gemma":[0.00060726545,0.00009851645,0.10540014,0.000032074586,0.000010405397,0.00003045704,0.00004747441,1.3645139e-7,0.8567856,0.000006431246,0.036840044,0.00014145409],"about_ca_topic_score_codex":0.00003928364,"about_ca_topic_score_gemma":0.000005380926,"teacher_disagreement_score":0.13436969,"about_ca_system_score_codex":0.000118145195,"about_ca_system_score_gemma":0.0000018383778,"threshold_uncertainty_score":0.99849886},"labels":[],"label_agreement":null},{"id":"W2472321212","doi":"10.1128/aem.00774-16","title":"Identification of Surface Protein Biomarkers of Listeria monocytogenes via Bioinformatics and Antibody-Based Protein Detection Tools","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada; University of Ottawa; Canadian Food Inspection Agency","funders":"","keywords":"Listeria monocytogenes; Polyclonal antibodies; Biology; Serotype; Microbiology; Monoclonal antibody; Pathogen; Listeria; Antibody; Bacteria; Genetics","score_opus":0.015316147899890185,"score_gpt":0.23542499668506542,"score_spread":0.22010884878517523,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2472321212","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98802054,0.0001815251,0.010917608,0.000023756551,0.000033822645,0.000548352,0.00025127694,0.0000054566312,0.000017653558],"genre_scores_gemma":[0.99808586,0.0000749695,0.0015500006,0.000017767212,0.000012830586,0.000026540556,0.00019340539,0.0000147037845,0.000023938022],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99914175,0.000039372662,0.00038605713,0.00025894117,0.0000314947,0.00014240584],"domain_scores_gemma":[0.9994348,0.000010338592,0.00026905778,0.0002449029,0.0000069218304,0.000033925146],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014475301,0.0001523418,0.00018148702,0.000031618703,0.000041219144,0.000006035584,0.0000926451,0.00018021971,0.000006419987],"category_scores_gemma":[0.000006627865,0.000121301644,0.00003545483,0.000028631912,0.0004613103,0.000008384039,0.00015614172,0.000021843376,0.0000021622154],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028428776,0.00003759808,0.0008776885,0.00007586612,0.00005148842,1.21028e-7,0.000017849175,0.0000042970887,0.9863908,0.00001002642,0.0000011167359,0.0122488495],"study_design_scores_gemma":[0.0007669518,0.0002571153,0.0021794992,0.000016261612,0.000016602686,0.00001270337,0.000049284998,0.00002716722,0.9961,0.00002533191,0.00040214966,0.00014695266],"about_ca_topic_score_codex":0.0000052309083,"about_ca_topic_score_gemma":0.0000023414968,"teacher_disagreement_score":0.012101897,"about_ca_system_score_codex":0.000016573476,"about_ca_system_score_gemma":0.0000109939365,"threshold_uncertainty_score":0.49465376},"labels":[],"label_agreement":null},{"id":"W2475337867","doi":"10.1128/aem.01177-16","title":"A Small Number of Phylogenetically Distinct Clonal Complexes Dominate a Coastal Vibrio cholerae Population","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Vibrio cholerae; Biology; Population; Cholera; Vibrionaceae; Ecology; Vibrio; Relative species abundance; Lineage (genetic); Outbreak; El Tor; Abundance (ecology); Temperate climate; Zoology; Microbiology; Genetics; Bacteria; Gene; Virology","score_opus":0.007107973675233205,"score_gpt":0.2122956119838747,"score_spread":0.2051876383086415,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2475337867","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99866784,0.00008545163,0.00026010376,0.00007884866,0.000027151968,0.00016219445,0.00046315306,0.0000044678955,0.0002507803],"genre_scores_gemma":[0.9984067,0.00018354022,0.0005872528,0.00006613076,0.000062048435,0.00002299077,0.0005483067,0.0000150965025,0.000107912965],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991461,0.00003950094,0.00019371609,0.0003366926,0.00003350617,0.00025047825],"domain_scores_gemma":[0.999694,0.000022564202,0.000071511626,0.00015111372,0.000004695577,0.000056112218],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006791495,0.0001560184,0.00019657923,0.000016661797,0.00005987996,0.000005065709,0.00009466274,0.00010831196,0.00008152251],"category_scores_gemma":[0.000008640137,0.0001126826,0.000047375815,0.000015570466,0.0005407041,0.0000017552187,0.00034278058,0.000039501818,0.000018708726],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018344818,0.000059145426,0.073329225,0.000009876416,0.000057807672,7.76486e-7,0.000013159117,3.0038734e-7,0.92254144,0.000097014046,0.000051529016,0.0036562856],"study_design_scores_gemma":[0.001494494,0.00019785088,0.506399,0.000009537082,0.000016341803,0.000063996646,0.000031515985,7.8717983e-7,0.48603484,0.00015034512,0.0053930557,0.00020828264],"about_ca_topic_score_codex":0.000021483931,"about_ca_topic_score_gemma":0.000037450136,"teacher_disagreement_score":0.4365066,"about_ca_system_score_codex":0.000012690103,"about_ca_system_score_gemma":0.0000069625635,"threshold_uncertainty_score":0.45950633},"labels":[],"label_agreement":null},{"id":"W2479285410","doi":"10.1128/aem.02128-16","title":"Extending CRISPR-Cas9 Technology from Genome Editing to Transcriptional Engineering in the Genus Clostridium","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centurion Biofuels (Canada); University of Waterloo","funders":"Networks of Centres of Excellence of Canada; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"CRISPR; Genome editing; Biology; Genome; Genetics; Computational biology; Cas9; Gene","score_opus":0.002988185360314819,"score_gpt":0.1948008756512281,"score_spread":0.1918126902909133,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2479285410","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9894876,0.000977772,0.008697534,0.00042284522,0.000086983164,0.00016279543,0.00010762077,0.000010491894,0.000046391226],"genre_scores_gemma":[0.9983755,0.00019996357,0.00073888403,0.00024212433,0.00023155639,0.000048917806,0.000127028,0.000016775875,0.000019269879],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991929,0.000010883663,0.00015517542,0.00033718333,0.000027995886,0.00027588173],"domain_scores_gemma":[0.9997516,0.000018507959,0.000025182908,0.00016451397,0.0000013437856,0.000038820686],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000810229,0.00015029205,0.000117030235,0.00006573073,0.000043906846,0.0000067579304,0.00015511697,0.00014955288,0.0000334825],"category_scores_gemma":[0.000007548518,0.00010874328,0.000028817753,0.000046453675,0.0000700259,0.0000020287825,0.00009426645,0.00008285432,0.000017192317],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013154644,0.000016415963,0.0011010288,0.0000023650412,0.000014999846,0.0000028999054,0.00006707462,0.00009516102,0.9950455,0.00009082509,0.000051248553,0.0034993691],"study_design_scores_gemma":[0.0010530293,0.00016650526,0.023620991,0.000013944411,0.000016435493,0.00011983329,0.00044063132,0.000008915068,0.8674285,0.00006784022,0.10672314,0.00034027093],"about_ca_topic_score_codex":0.0000048608044,"about_ca_topic_score_gemma":0.0000056395156,"teacher_disagreement_score":0.12761699,"about_ca_system_score_codex":0.000020923124,"about_ca_system_score_gemma":0.0000037337538,"threshold_uncertainty_score":0.44344226},"labels":[],"label_agreement":null},{"id":"W2493607481","doi":"10.1128/aem.01235-16","title":"The Microbiota of Breast Tissue and Its Association with Breast Cancer","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":622,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"Canadian Institutes of Health Research","keywords":"Breast cancer; Biology; Microbiome; Population; Cancer; Bacteria; Microbiology; Staphylococcus epidermidis; Genetics; Immunology; Cancer research; Staphylococcus aureus; Medicine; Environmental health","score_opus":0.0018391650563102451,"score_gpt":0.17878384846762863,"score_spread":0.1769446834113184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2493607481","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99644977,0.0012717855,0.000012233705,0.0012315077,0.000035891462,0.0001656904,0.00077536853,0.000003157115,0.000054605458],"genre_scores_gemma":[0.9953904,0.003603012,0.000023599261,0.0001737666,0.000053740914,0.0000131779925,0.00006474001,0.000012971958,0.0006646007],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99933684,0.000025399759,0.00013158713,0.00025656744,0.00002034473,0.00022927781],"domain_scores_gemma":[0.9997077,0.00001971859,0.00010958339,0.00011121478,0.0000066696975,0.000045116325],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008513158,0.00012615412,0.00012878176,0.000012195173,0.00011519713,0.0000058813102,0.00007108503,0.0001453516,0.000027675753],"category_scores_gemma":[0.000001052744,0.000069346046,0.00001450052,0.000017111006,0.00019507935,0.0000025295992,0.00009819785,0.000046010802,0.0000066679163],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009225053,0.000023072202,0.010342105,0.000009524604,0.000051413586,1.8791432e-7,0.000019943263,2.9032492e-7,0.9841984,0.000055322762,0.00050550664,0.0047019776],"study_design_scores_gemma":[0.0015426978,0.00019594117,0.16753392,0.00002379308,0.000041042327,0.00041939967,0.000105615465,4.0234835e-7,0.7833031,0.000013352842,0.046569925,0.00025085386],"about_ca_topic_score_codex":0.000015416881,"about_ca_topic_score_gemma":0.000034550703,"teacher_disagreement_score":0.20089534,"about_ca_system_score_codex":0.000031721844,"about_ca_system_score_gemma":0.00001717912,"threshold_uncertainty_score":0.28278497},"labels":[],"label_agreement":null},{"id":"W2495590690","doi":"10.1128/aem.00077-16","title":"Evaluation of Various Campylobacter-Specific Quantitative PCR (qPCR) Assays for Detection and Enumeration of Campylobacteraceae in Irrigation Water and Wastewater via a Miniaturized Most-Probable-Number–qPCR Assay","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; Provincial Laboratory of Public Health; University of Calgary; University of Alberta","funders":"","keywords":"Campylobacter; Campylobacter jejuni; Biology; Microbiology; Arcobacter; Bacteria; Primer (cosmetics); Enumeration; Real-time polymerase chain reaction; Sewage; Polymerase chain reaction; Veterinary medicine; Chemistry","score_opus":0.018362922502541304,"score_gpt":0.21558915693137368,"score_spread":0.19722623442883236,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2495590690","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985753,0.00019241191,0.00013789987,0.0001560437,0.000067174406,0.0006779027,0.00014908271,0.000007749928,0.000036380996],"genre_scores_gemma":[0.9988124,0.00018523488,0.00041130243,0.00004825434,0.00003155212,0.000089364694,0.00040691218,0.000003015165,0.000011997702],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984619,0.00032416513,0.00044120516,0.00044005914,0.00007241678,0.0002602722],"domain_scores_gemma":[0.9992924,0.0003768092,0.00019504143,0.00006124315,0.000027877017,0.00004668059],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010788931,0.00019506895,0.00036402853,0.000028985703,0.0000787368,0.000009664829,0.000056633296,0.00024376901,0.00007699528],"category_scores_gemma":[0.0000216822,0.000080931815,0.00003597194,0.00004914503,0.00025974849,0.00009875375,0.00006626228,0.000064237945,0.0000039261413],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023654636,0.00006145925,0.009482635,0.000011315573,0.000029718482,1.6389045e-7,0.00029566494,0.0000021827288,0.9505245,0.00007571321,0.0000051190736,0.039274972],"study_design_scores_gemma":[0.0032834725,0.000726086,0.23638894,0.000038248247,0.00012214131,0.00006907028,0.0005608725,0.00022942624,0.7499001,0.007082709,0.0011995501,0.0003993955],"about_ca_topic_score_codex":0.00008112892,"about_ca_topic_score_gemma":0.000249689,"teacher_disagreement_score":0.2269063,"about_ca_system_score_codex":0.00006294958,"about_ca_system_score_gemma":0.000003851547,"threshold_uncertainty_score":0.33003035},"labels":[],"label_agreement":null},{"id":"W2509394974","doi":"10.1128/aem.01510-16","title":"Probiotic Lactobacillus rhamnosus Reduces Organophosphate Pesticide Absorption and Toxicity to Drosophila melanogaster","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pesticide and Herbicide Environmental Studies","field":"Environmental Science","cited_by":110,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St Joseph's Health Care; Agriculture and Agri-Food Canada; Lawson Health Research Institute; Western University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Lactobacillus rhamnosus; Organophosphate; Drosophila melanogaster; Probiotic; Pesticide; Food science; Biology; Toxicity; Microbiology; Chlorpyrifos; Lactobacillus; Chemistry; Toxicology; Biotechnology; Bacteria; Biochemistry; Genetics; Agronomy; Fermentation","score_opus":0.00536436654633958,"score_gpt":0.1763504653949418,"score_spread":0.17098609884860222,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2509394974","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997141,0.00016967324,0.000095943906,0.0008344071,0.000074339536,0.00041935762,0.000070878225,0.000037846217,0.0011565494],"genre_scores_gemma":[0.9972218,0.0003021508,0.0005132787,0.0013038787,0.000042707852,0.000043924778,0.00001980626,0.000027637752,0.0005247775],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99837625,0.000033546006,0.00027554654,0.0007256171,0.000086446795,0.0005026086],"domain_scores_gemma":[0.99941784,0.000072263094,0.000104476065,0.00018927015,7.0185723e-7,0.00021547715],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000115091614,0.00033281627,0.0003084191,0.00003440145,0.00022732392,0.000019102392,0.00014047895,0.00014075323,0.0020016842],"category_scores_gemma":[0.000010517683,0.00023700438,0.00003234219,0.000057875706,0.0008720604,0.00010322229,0.0006596045,0.00009409814,0.0012187505],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005512887,0.000066544,0.048774354,0.000004180065,0.000021027614,0.000008097941,0.00018762358,0.000009192815,0.94177735,0.000036113237,0.00028383677,0.008776578],"study_design_scores_gemma":[0.0010759413,0.00031806357,0.64704543,0.000026391443,0.000055151733,0.00016060864,0.00017547776,0.0000024261535,0.3427931,0.00075544446,0.006996772,0.00059516233],"about_ca_topic_score_codex":0.00003030994,"about_ca_topic_score_gemma":0.000027253973,"teacher_disagreement_score":0.5989842,"about_ca_system_score_codex":0.00020385122,"about_ca_system_score_gemma":0.0000020192988,"threshold_uncertainty_score":0.9995589},"labels":[],"label_agreement":null},{"id":"W2510969312","doi":"10.1128/aem.01908-16","title":"Expression of Surface Protein LapB by a Wide Spectrum of Listeria monocytogenes Serotypes as Demonstrated with Anti-LapB Monoclonal Antibodies","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada; University of Ottawa; Canadian Food Inspection Agency","funders":"Canadian Food Inspection Agency","keywords":"Listeria monocytogenes; Serotype; Monoclonal antibody; Microbiology; Surface protein; Biology; Virology; Antibody; Listeria; Bacteria; Immunology; Genetics","score_opus":0.010491267986863773,"score_gpt":0.2161843272566648,"score_spread":0.20569305926980103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2510969312","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979251,0.0007663976,0.00025706395,0.00005853581,0.000028666082,0.0003512751,0.00046752527,0.0000081938415,0.00013725484],"genre_scores_gemma":[0.9975005,0.00044551716,0.0014507716,0.000044906523,0.000019354293,0.000015700132,0.00033862505,0.00002826919,0.00015636462],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99889266,0.00005334089,0.0003008604,0.00045421434,0.000046455596,0.00025245137],"domain_scores_gemma":[0.999422,0.000017578292,0.00021161018,0.00028714625,0.000006134795,0.000055491724],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007161086,0.00025116376,0.00032862183,0.000021837479,0.000051402076,0.0000046255104,0.00016719036,0.00021207424,0.000038373826],"category_scores_gemma":[0.0000035881917,0.00017233184,0.000043756267,0.000029172192,0.0007104899,0.00000677785,0.0002864856,0.000042008603,0.0000061914902],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00072760985,0.00009461917,0.027398467,0.0000303783,0.00007990918,0.000001494583,0.000024862316,0.000008049747,0.9712842,0.00002539982,0.000069851965,0.00025517418],"study_design_scores_gemma":[0.0010502673,0.00057635695,0.0035722384,0.000039652754,0.000021326465,0.00005203333,0.00008822148,5.085535e-7,0.9929599,0.000047231242,0.0013598892,0.00023235077],"about_ca_topic_score_codex":0.000018272292,"about_ca_topic_score_gemma":0.000006063207,"teacher_disagreement_score":0.023826228,"about_ca_system_score_codex":0.00001463396,"about_ca_system_score_gemma":0.000023636718,"threshold_uncertainty_score":0.70274884},"labels":[],"label_agreement":null},{"id":"W2511262270","doi":"10.1128/aem.01708-16","title":"Population Genetics of Hirsutella rhossiliensis, a Dominant Parasite of Cyst Nematode Juveniles on a Continental Scale","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Nematode management and characterization studies","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Key Research and Development Program of China; National Natural Science Foundation of China","keywords":"Biology; Nematode; Heterodera schachtii; Genetic diversity; Population; Genetic variation; Biological pest control; Host (biology); Ecology; Population genetics; Local adaptation; Zoology; Genetics; Gene","score_opus":0.004639851673627477,"score_gpt":0.16742190914005403,"score_spread":0.16278205746642654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2511262270","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992232,0.000111652516,0.0000049299097,0.00013074293,0.000029482608,0.0001470805,0.00021207315,0.000005938264,0.00013491853],"genre_scores_gemma":[0.99924326,0.0003809345,0.000025613142,0.00005652807,0.000020848383,0.0000074277073,0.00019092191,0.0000010265331,0.00007342091],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994297,0.00001723423,0.00021948497,0.00018101266,0.000036027246,0.000116519404],"domain_scores_gemma":[0.99974287,0.000050486156,0.00014358644,0.00003956536,0.0000024473172,0.000021054218],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004214365,0.0001026489,0.00022203772,0.0000110713945,0.00005326783,0.0000029893718,0.000058300542,0.000052590643,0.000069026515],"category_scores_gemma":[9.879664e-7,0.000038274327,0.000037660167,0.000031862604,0.0001763109,0.000015112705,0.000080684185,0.000017662478,0.000009091892],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051976185,0.00006782924,0.058801632,0.0000070879305,0.000013545627,3.8615576e-7,0.000036372247,3.5843942e-7,0.92876726,0.00015340235,0.000040417905,0.0120597035],"study_design_scores_gemma":[0.00051565765,0.00018380528,0.62562585,0.000029049883,0.000022416752,0.000010673888,0.0003270388,0.0000018058599,0.37012583,0.00009866909,0.0029182662,0.00014093408],"about_ca_topic_score_codex":0.000012825722,"about_ca_topic_score_gemma":0.000017248862,"teacher_disagreement_score":0.5668242,"about_ca_system_score_codex":0.000007417797,"about_ca_system_score_gemma":3.8794795e-7,"threshold_uncertainty_score":0.15607817},"labels":[],"label_agreement":null},{"id":"W2519473974","doi":"10.1128/aem.02210-16","title":"Microbial Herd Protection Mediated by Antagonistic Interaction in Polymicrobial Communities","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Canada Foundation for Innovation; Alberta Innovates - Health Solutions; Alberta Livestock and Meat Agency; Canada Research Chairs; Government of Canada","keywords":"Biology; Effector; Type VI secretion system; Vibrio cholerae; Microbiology; Bacteria; Ecology; Genetics; Virulence; Gene; Cell biology","score_opus":0.006313597718548395,"score_gpt":0.19973146632869676,"score_spread":0.19341786861014837,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2519473974","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986724,0.00017500175,0.00012377536,0.00025500887,0.00008297887,0.0002647043,0.00033153105,0.000009445628,0.0000851096],"genre_scores_gemma":[0.9978441,0.0008379272,0.000029403052,0.00016135447,0.000059140744,0.000056866626,0.00084520207,0.00001751939,0.00014848018],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991907,0.000079476304,0.00017536028,0.00025519147,0.000021805408,0.00027750197],"domain_scores_gemma":[0.9997454,0.000020863545,0.00005336055,0.00013991175,0.0000026181094,0.00003780208],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000080607766,0.00016375557,0.00015378337,0.00004639495,0.00009496945,0.000011612915,0.00009667635,0.00015622043,0.000048982987],"category_scores_gemma":[0.0000069040043,0.00012835032,0.000025369376,0.000024378565,0.00042588997,0.000005519372,0.00023488469,0.00009777052,0.000028499513],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025024248,0.00007199436,0.0015124828,0.000006753334,0.00003164909,7.874929e-7,0.000075663134,3.1861484e-7,0.99497515,0.0000035599971,0.0006078564,0.0024635673],"study_design_scores_gemma":[0.001752985,0.00026624926,0.0027500317,0.000015765832,0.0000063978478,0.000069058355,0.00043888224,0.0000013298924,0.9490723,0.00001097386,0.045376487,0.00023956485],"about_ca_topic_score_codex":0.0001029161,"about_ca_topic_score_gemma":0.0001361006,"teacher_disagreement_score":0.04590285,"about_ca_system_score_codex":0.00006350216,"about_ca_system_score_gemma":0.000009644672,"threshold_uncertainty_score":0.52339745},"labels":[],"label_agreement":null},{"id":"W2519777519","doi":"10.1128/aem.02199-16","title":"Pseudomonas brassicacearum Strain DF41 Kills Caenorhabditis elegans through Biofilm-Dependent and Biofilm-Independent Mechanisms","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; University of Manitoba","funders":"National Institutes of Health","keywords":"Biofilm; Biology; Microbiology; Caenorhabditis elegans; Bacteria; Quorum sensing; Pseudomonas aeruginosa; Pseudomonas; Pathogen; Human pathogen; Gene; Biochemistry; Genetics","score_opus":0.004367738506270136,"score_gpt":0.1796375290884073,"score_spread":0.17526979058213715,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2519777519","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964263,0.00037456225,0.00069892564,0.0005912994,0.00023521857,0.00030561304,0.0010182147,0.000022915707,0.00032697475],"genre_scores_gemma":[0.99512273,0.00133365,0.0015143699,0.0007658192,0.00016619467,0.000016215805,0.0004999801,0.00004477306,0.0005362645],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982115,0.000058180245,0.00028912455,0.00082961604,0.00006262854,0.00054894673],"domain_scores_gemma":[0.9994137,0.000022142416,0.00011565553,0.00030518818,0.0000042215734,0.00013906589],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00012591253,0.00036504256,0.0003048005,0.000035604906,0.00018226924,0.000032893266,0.00013725545,0.00043837927,0.00012589095],"category_scores_gemma":[0.0000044837398,0.00027639934,0.00006657851,0.000026682794,0.0004855766,0.000011473325,0.0003502175,0.0001130333,0.000046291163],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000069025875,0.00006808442,0.00028330347,0.0000069269963,0.0000753402,0.000008711711,0.000041658026,2.0265594e-7,0.9908134,0.0010366825,0.00021878791,0.007377885],"study_design_scores_gemma":[0.0014722575,0.00037500868,0.0018282165,0.000012417276,0.00003341997,0.00037742482,0.00021568926,3.7152867e-7,0.97449523,0.0003371412,0.020399831,0.00045299102],"about_ca_topic_score_codex":0.000032155785,"about_ca_topic_score_gemma":0.000029717407,"teacher_disagreement_score":0.020181043,"about_ca_system_score_codex":0.00003319017,"about_ca_system_score_gemma":0.000017657114,"threshold_uncertainty_score":0.9999688},"labels":[],"label_agreement":null},{"id":"W2520629828","doi":"10.1128/aem.01366-16","title":"An Ecotype of Neorickettsia risticii Causing Potomac Horse Fever in Canada","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Ehrlichia; Biology; Zoology; Microbiology; Virology","score_opus":0.0033744133422698836,"score_gpt":0.17129652330404607,"score_spread":0.1679221099617762,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2520629828","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99843323,0.0006442809,0.000036694775,0.000043769425,0.00018370831,0.00016039795,0.00031212866,0.0000118061225,0.00017399662],"genre_scores_gemma":[0.9994742,0.00013199117,0.000020472684,0.00015743873,0.0000141119735,0.0000139105405,0.0001228148,0.00001642338,0.000048604943],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99896115,0.00008364473,0.00025759288,0.0003452041,0.000011906755,0.0003404815],"domain_scores_gemma":[0.99956787,0.00009173191,0.00009596155,0.00020595921,0.0000026745035,0.000035818353],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000059761715,0.00018240487,0.00028606542,0.00006477829,0.000057784713,0.0000019425704,0.00009313315,0.00015236351,0.00068955944],"category_scores_gemma":[0.0000056965555,0.00014038349,0.000024792751,0.000041362768,0.0003320681,0.000028192566,0.000076908385,0.00010004764,0.00005658541],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006576869,0.00009730909,0.11851545,0.000005297482,0.000039023456,0.0000090732365,0.000042815645,0.0000046150953,0.8762804,0.000141798,0.0001835536,0.004614882],"study_design_scores_gemma":[0.003428724,0.00024354493,0.5956671,0.00002658358,0.00008220602,0.0003521309,0.0005338767,0.0000020232137,0.38741645,0.00024560734,0.011426807,0.00057490985],"about_ca_topic_score_codex":0.10649081,"about_ca_topic_score_gemma":0.13799989,"teacher_disagreement_score":0.48886397,"about_ca_system_score_codex":0.0002651903,"about_ca_system_score_gemma":0.000100531164,"threshold_uncertainty_score":0.8994591},"labels":[],"label_agreement":null},{"id":"W2523177517","doi":"10.1128/aem.02479-16","title":"Two Outer Membrane Proteins Contribute to Caulobacter crescentus Cellular Fitness by Preventing Intracellular S-Layer Protein Accumulation","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institutes of Health; Natural Sciences and Engineering Research Council of Canada; Government of Canada; U.S. Department of Energy","keywords":"Caulobacter crescentus; Cell biology; S-layer; Bacterial outer membrane; Biology; Cytoplasm; Membrane protein; Transport protein; Protein subcellular localization prediction; Escherichia coli; Biochemistry; Gene; Membrane; Cell cycle","score_opus":0.0054547501203558255,"score_gpt":0.19626667680937093,"score_spread":0.19081192668901512,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2523177517","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99556214,0.00025681886,0.0021796448,0.00057077,0.00009204714,0.0009784779,0.00030266953,0.000018574587,0.000038865794],"genre_scores_gemma":[0.997306,0.000118915006,0.0007061701,0.00028521588,0.0001534148,0.00012302531,0.0006964202,0.000033474866,0.0005774028],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985216,0.00005369374,0.00028426762,0.0006403726,0.00004338821,0.00045662565],"domain_scores_gemma":[0.9994614,0.00000654466,0.00010540347,0.00030945655,0.000007096739,0.000110091045],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012866216,0.00027413847,0.0002351789,0.00003805679,0.00009584871,0.000019585164,0.00017736139,0.00037664233,0.00009197818],"category_scores_gemma":[0.000007319079,0.0002093216,0.00005197172,0.00003375401,0.00017930573,0.000005723686,0.00034258713,0.000090057016,0.00005373558],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013137698,0.00008336526,0.00045544456,0.00001013464,0.00005022427,0.0000024490416,0.000012810542,0.0000016920785,0.99482775,0.000050836345,0.00013496354,0.0042389478],"study_design_scores_gemma":[0.0013386855,0.0002192696,0.00023682934,0.000013948619,0.000017738557,0.000018691739,0.000013699429,0.0000017162948,0.9243744,0.00002890067,0.073433466,0.00030267355],"about_ca_topic_score_codex":0.00001090372,"about_ca_topic_score_gemma":0.000009100028,"teacher_disagreement_score":0.07329851,"about_ca_system_score_codex":0.00003080326,"about_ca_system_score_gemma":0.000009848236,"threshold_uncertainty_score":0.8535887},"labels":[],"label_agreement":null},{"id":"W2530941234","doi":"10.1128/aem.01675-16","title":"Comparison of Microbial and Chemical Source Tracking Markers To Identify Fecal Contamination Sources in the Humber River (Toronto, Ontario, Canada) and Associated Storm Water Outfalls","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fecal contamination and water quality","field":"Environmental Science","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Environment and Climate Change Canada","funders":"Environment and Climate Change Canada","keywords":"Outfall; Fecal coliform; Source tracking; Contamination; Environmental science; Feces; Stormwater; Storm; Water source; Sewage; Waterborne diseases; Water pollution; Indicator bacteria; Water quality; Environmental engineering; Water resource management; Biology; Ecology; Geography; Surface runoff","score_opus":0.009049918831741026,"score_gpt":0.22200298076953331,"score_spread":0.2129530619377923,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2530941234","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992731,0.000023542596,0.00004283831,0.00022283384,0.000029912442,0.00023192259,0.000024836823,0.000004292727,0.00014672216],"genre_scores_gemma":[0.99932635,0.0000059003737,0.000028763136,0.00040608036,0.000007115514,0.0000099019335,0.00004252821,0.0000073002066,0.00016606545],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99899465,0.000095479656,0.00026020483,0.00031308105,0.00009021897,0.00024637565],"domain_scores_gemma":[0.99968743,0.000095875,0.00006736015,0.00008604438,0.0000014029138,0.00006188124],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032294868,0.00014922004,0.00022526548,0.000013575967,0.000079992635,0.000013932601,0.00010418196,0.00011329617,0.00034803397],"category_scores_gemma":[0.0000059466297,0.000091398,0.000017695593,0.000016351081,0.00044299793,0.0000716341,0.00019462119,0.000077208584,0.0000066346247],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003389679,0.00004972189,0.35020006,0.0000024696592,0.000008935005,5.829325e-7,0.004367568,9.382829e-7,0.6406641,0.000007050822,0.0001554123,0.004509294],"study_design_scores_gemma":[0.0008213196,0.000051655432,0.92070824,0.000008547431,0.000014843522,0.0000080400805,0.0010608125,0.0000035105895,0.07400056,0.00001743898,0.0031461862,0.00015883843],"about_ca_topic_score_codex":0.27347812,"about_ca_topic_score_gemma":0.75446385,"teacher_disagreement_score":0.5705082,"about_ca_system_score_codex":0.00045576933,"about_ca_system_score_gemma":0.0000046131927,"threshold_uncertainty_score":0.73135984},"labels":[],"label_agreement":null},{"id":"W2550267049","doi":"10.1128/aem.02763-16","title":"Waterborne Viruses and F-Specific Coliphages in Mixed-Use Watersheds: Microbial Associations, Host Specificities, and Affinities with Environmental/Land Use Factors","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fecal contamination and water quality","field":"Environmental Science","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Coliphage; Norovirus; Biology; Astrovirus; Virology; Rotavirus; Virus; RNA; DNA; Microbiology; Bacteriophage; Genetics; Gene; Escherichia coli","score_opus":0.018104434802830565,"score_gpt":0.17901050359684126,"score_spread":0.1609060687940107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2550267049","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984652,0.00012695421,0.000028388451,0.00012384886,0.00004965251,0.0003385728,0.0007894709,0.00002473138,0.00005318699],"genre_scores_gemma":[0.997726,0.0011379014,0.00016974198,0.0003030076,0.00001793813,0.000020758363,0.00021708307,0.00002782578,0.0003796971],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99843156,0.000118680895,0.00031911134,0.00062533503,0.00008395337,0.00042133],"domain_scores_gemma":[0.99937415,0.00023248982,0.000102515616,0.00017081607,7.4654093e-7,0.00011925791],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014969507,0.0003386436,0.0003286066,0.00006846168,0.00018771406,0.000092321105,0.00009471729,0.0001701588,0.0004014508],"category_scores_gemma":[0.0000039067477,0.00022444624,0.000023813636,0.00003652341,0.0013669068,0.0004523875,0.0002912519,0.00011993057,0.00005296504],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000061665174,0.000071986775,0.4936578,0.00000327213,0.000014806247,0.0000048688707,0.0006514095,8.164367e-7,0.50466454,0.00006225803,0.00008229835,0.0007242392],"study_design_scores_gemma":[0.0015387923,0.00012405952,0.9218864,0.000013713435,0.00001545781,0.000026825543,0.000862537,8.4208676e-7,0.06055625,0.00004707404,0.014533669,0.00039437404],"about_ca_topic_score_codex":0.00028270693,"about_ca_topic_score_gemma":0.0003324259,"teacher_disagreement_score":0.4441083,"about_ca_system_score_codex":0.0002210687,"about_ca_system_score_gemma":0.0000024292367,"threshold_uncertainty_score":0.9152652},"labels":[],"label_agreement":null},{"id":"W2560722222","doi":"10.1128/aem.03187-16","title":"Dynamics of Virus Distribution in a Defined Swine Production Network Using Enteric Viruses as Molecular Markers","year":2016,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Montréal; Canadian Food Inspection Agency; Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada","funders":"","keywords":"Livestock; Biology; Biosecurity; Astrovirus; Veterinary medicine; Rotavirus; Biotechnology; Virology; Virus; Ecology; Medicine","score_opus":0.009057676145666722,"score_gpt":0.23663697500736372,"score_spread":0.227579298861697,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2560722222","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976158,0.00016853836,0.0012253877,0.0004645352,0.000048273647,0.00026686394,0.0001783079,0.000007846158,0.000024412635],"genre_scores_gemma":[0.99811554,0.00053736824,0.00048974715,0.0002201402,0.00003424738,0.000015128578,0.0005593785,0.000010975702,0.00001744809],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990361,0.00006829263,0.00026061034,0.00027509863,0.00003157085,0.00032833262],"domain_scores_gemma":[0.99972653,0.0000148344025,0.000073223746,0.00011942987,0.0000027084154,0.00006324861],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015357483,0.00012099238,0.0002897916,0.000043032556,0.000026601943,0.0000014307864,0.00003929076,0.00009772064,0.00007019782],"category_scores_gemma":[0.00002904327,0.000090613365,0.00003887405,0.000054932912,0.00034940633,0.000023777939,0.000088784305,0.00008395111,0.000011198179],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00083668827,0.00008851399,0.057906695,0.000017193568,0.00003251794,0.000012455232,0.0000055854293,0.000020264948,0.93680596,0.00010352872,0.00010599489,0.004064607],"study_design_scores_gemma":[0.019061495,0.006579121,0.47462076,0.00090556184,0.00031918558,0.004871844,0.0007179423,0.00094396906,0.4769074,0.0047127996,0.0091312295,0.0012287124],"about_ca_topic_score_codex":0.00007668016,"about_ca_topic_score_gemma":0.000025979223,"teacher_disagreement_score":0.45989856,"about_ca_system_score_codex":0.0001778264,"about_ca_system_score_gemma":0.000010009354,"threshold_uncertainty_score":0.36951056},"labels":[],"label_agreement":null},{"id":"W2578837604","doi":"10.1128/aem.02753-16","title":"Capturing Compositional Variation in Denitrifying Communities: a Multiple-Primer Approach That Includes Epsilonproteobacteria","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"Bundesministerium für Bildung und Forschung; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Denitrifying bacteria; Biology; Nitrite reductase; Arcobacter; 16S ribosomal RNA; Primer (cosmetics); Genetics; Ecology; Denitrification; Gene; Nitrite","score_opus":0.01817512329343662,"score_gpt":0.19976928299499444,"score_spread":0.18159415970155782,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2578837604","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99832785,0.000035331053,0.00008836725,0.00003870715,0.0000394894,0.00032629113,0.000045287266,0.000015265152,0.0010833994],"genre_scores_gemma":[0.9922135,0.000029816178,0.0072192634,0.00007860195,0.00002118521,0.000057053076,0.00032865917,0.000015611597,0.000036349364],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991528,0.000053277057,0.00016484715,0.00028747084,0.000055451852,0.0002861862],"domain_scores_gemma":[0.9995116,0.00003677847,0.000114161994,0.0002839168,3.9441778e-7,0.00005313594],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012095019,0.00020383875,0.00020208914,0.00003491954,0.0005610047,0.000056912737,0.00025536073,0.00012467666,0.00023913203],"category_scores_gemma":[0.0000011293288,0.00018524723,0.000034656437,0.00001406461,0.00049471296,0.00015980157,0.0005936971,0.00015234346,0.00008250725],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049053182,0.00012486508,0.21313587,0.0000044613753,0.00001917971,0.0000032356618,0.00081137236,0.000033027463,0.7855494,0.000014542603,0.0000041680287,0.0002508311],"study_design_scores_gemma":[0.0019552028,0.0000398509,0.90274125,0.000010468636,0.00002399466,0.00011083831,0.00070512446,0.00026073543,0.093295895,0.0002457611,0.00029286472,0.00031798362],"about_ca_topic_score_codex":0.0013067588,"about_ca_topic_score_gemma":0.00010900028,"teacher_disagreement_score":0.69225353,"about_ca_system_score_codex":0.00014933682,"about_ca_system_score_gemma":0.0000022523877,"threshold_uncertainty_score":0.75541633},"labels":[],"label_agreement":null},{"id":"W2581305830","doi":"10.1128/aem.03374-16","title":"Development of <i>oriC</i> -Based Plasmids for Mesoplasma florum","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Phytoplasmas and Hemiptera pathogens","field":"Agricultural and Biological Sciences","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; Defense Advanced Research Projects Agency; Government of Canada","keywords":"Plasmid; Computational biology; Biology; Genetics; DNA Transposable Elements; Computer science; DNA; Gene; Genome; Transposable element","score_opus":0.013236369047862968,"score_gpt":0.18545612606699108,"score_spread":0.17221975701912812,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2581305830","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99863577,0.000033561224,0.000013661128,0.00012292467,0.00007242865,0.00018073144,0.0002907369,0.00000888536,0.0006412751],"genre_scores_gemma":[0.99679834,0.000014992488,0.002607506,0.00014234064,0.00004547835,0.000039859016,0.00030436416,0.0000011758468,0.000045954486],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993577,0.000004841363,0.00016496205,0.00023760989,0.000024816774,0.00021004629],"domain_scores_gemma":[0.9997187,0.000047400084,0.000116018295,0.000067635345,0.0000022595145,0.000047944228],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007468889,0.000121138844,0.0001795221,0.00000527752,0.00041713522,0.000014604765,0.00016916575,0.000097835444,0.00007111219],"category_scores_gemma":[0.0000022820793,0.000054726646,0.000043534696,0.000008478865,0.000173874,0.000022178174,0.00010076422,0.000039700797,0.000010103972],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038796472,0.00005553684,0.005379229,0.000006838105,0.000010568165,5.381448e-7,0.000034849792,7.012453e-7,0.97111934,0.00012023175,0.00010063481,0.023132712],"study_design_scores_gemma":[0.0006135626,0.000115651776,0.04164397,0.000006906708,0.000013036405,0.000012533883,0.00014019928,0.000020285834,0.76941043,0.00010201617,0.18770555,0.00021587941],"about_ca_topic_score_codex":0.0000013057471,"about_ca_topic_score_gemma":0.000043899883,"teacher_disagreement_score":0.20170896,"about_ca_system_score_codex":0.000012377708,"about_ca_system_score_gemma":0.000004166207,"threshold_uncertainty_score":0.3208309},"labels":[],"label_agreement":null},{"id":"W2581889385","doi":"10.1128/aem.02983-16","title":"Use of Acetate, Propionate, and Butyrate for Reduction of Nitrate and Sulfate and Methanogenesis in Microcosms and Bioreactors Simulating an Oil Reservoir","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Methanogenesis; Microcosm; Propionate; Nitrate; Bioreactor; Sulfate; Chemistry; Butyrate; Environmental chemistry; Sulfate-reducing bacteria; Methane; Pulp and paper industry; Chromatography; Fermentation; Biochemistry; Organic chemistry","score_opus":0.023643682975720854,"score_gpt":0.2262351856892903,"score_spread":0.20259150271356943,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2581889385","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993017,0.00021213149,0.0000048568777,0.000042302298,0.000021357337,0.00025883736,0.00013911778,0.0000032472092,0.000016493752],"genre_scores_gemma":[0.99615073,0.0019860668,0.0017128222,0.000015763666,0.000009714378,0.000010421051,0.00006220336,0.000011473101,0.000040807834],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99914175,0.00003336201,0.00023927673,0.00038569362,0.000026948812,0.00017298669],"domain_scores_gemma":[0.9995543,0.000044278004,0.00021159204,0.00012817272,0.00000213376,0.00005955199],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019865613,0.00015310862,0.00023763183,0.000040533185,0.00015140322,0.000026103906,0.00005579435,0.00012772875,0.000008407148],"category_scores_gemma":[0.0000076157585,0.00013149453,0.000012421195,0.000020484824,0.0008939053,0.00019519354,0.00022286481,0.00005608281,2.9048456e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011255113,0.000037287584,0.06498214,0.000063969834,0.0000095094765,3.137999e-7,0.0002965659,0.000016968012,0.9232242,0.0000074580585,0.0000019780214,0.011247035],"study_design_scores_gemma":[0.0012210114,0.00021436023,0.21833093,0.000020540925,0.000036112688,0.00002702601,0.00032956587,0.00020007178,0.7788375,0.00024387214,0.00030856158,0.00023047332],"about_ca_topic_score_codex":0.000453494,"about_ca_topic_score_gemma":0.0001385742,"teacher_disagreement_score":0.15334879,"about_ca_system_score_codex":0.000017797995,"about_ca_system_score_gemma":0.0000024642366,"threshold_uncertainty_score":0.5362191},"labels":[],"label_agreement":null},{"id":"W2582287332","doi":"10.1128/aem.03172-16","title":"Novel Aldo-Keto Reductases for the Biocatalytic Conversion of 3-Hydroxybutanal to 1,3-Butanediol: Structural and Biochemical Studies","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme Catalysis and Immobilization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; NIH Office of the Director; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Cofactor; Chemistry; Acetaldehyde; Stereochemistry; Active site; Biochemistry; Enzyme; Aldo-keto reductase; Mutagenesis; Substrate (aquarium); Biosynthesis; Oxidoreductase; Combinatorial chemistry; Reductase; Biology; Mutant","score_opus":0.011673709279623305,"score_gpt":0.24302087315618623,"score_spread":0.23134716387656293,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2582287332","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968057,0.0021806813,0.0002275817,0.00017578185,0.00006665259,0.0002621723,0.00026891482,0.0000018687599,0.000010621525],"genre_scores_gemma":[0.99824584,0.0006546603,0.00031796348,0.00016805355,0.0000681745,0.00002109977,0.0004656707,0.000008234031,0.000050327806],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994019,0.0000052678056,0.00014044486,0.0002970751,0.000021464271,0.00013382264],"domain_scores_gemma":[0.9995761,0.000027407179,0.00009590059,0.00025582747,0.000006911694,0.000037848175],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007003806,0.00012400204,0.00016677019,0.0000154022,0.00022222634,0.000011429488,0.0001358584,0.00008933292,0.000003315793],"category_scores_gemma":[0.000030424819,0.00008731842,0.00003691977,0.00001001174,0.0006303166,0.000003625167,0.00022316806,0.000030940413,8.1256525e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000084600455,0.0000137457955,0.00044984667,0.000021179181,0.00009968407,7.84883e-8,0.000044057346,0.0000060089837,0.99838024,0.00007035166,0.00042586934,0.00040434537],"study_design_scores_gemma":[0.0005299167,0.00016998326,0.0023490698,0.0000056170275,0.00006421828,0.00003721009,0.0004971907,0.000017355454,0.9927046,0.000016946604,0.0034897774,0.00011814713],"about_ca_topic_score_codex":0.0000069467983,"about_ca_topic_score_gemma":0.000002144697,"teacher_disagreement_score":0.005675665,"about_ca_system_score_codex":0.000009015639,"about_ca_system_score_gemma":0.0000052551995,"threshold_uncertainty_score":0.35607418},"labels":[],"label_agreement":null},{"id":"W2586579175","doi":"10.1128/aem.03508-16","title":"Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Porphyrin Metabolism and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"National Center for Research Resources; National Institute of Environmental Health Sciences; U.S. Department of Energy; National Institutes of Health; National Science Foundation","keywords":"Corrinoid; Cobalamin; Dehalococcoides; Biology; Metagenomics; Bacteria; Genome; Biochemistry; Microbiology; Gene; Genetics; Chemistry; Methylation; Methyltransferase","score_opus":0.01430616057409741,"score_gpt":0.2467590041252239,"score_spread":0.23245284355112647,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2586579175","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966976,0.0023800281,0.00018712235,0.000059235124,0.00003271736,0.00020011928,0.000394615,0.0000039724446,0.000044607717],"genre_scores_gemma":[0.99807584,0.00082812185,0.00042043853,0.00021437005,0.000014307834,0.0000065407994,0.00041170983,0.000014949924,0.000013747409],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99925303,0.00008674429,0.0001883512,0.00026563188,0.00002157467,0.00018468809],"domain_scores_gemma":[0.99944925,0.000050469826,0.00017462824,0.0002695273,0.0000046807745,0.000051446546],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015552952,0.0001921213,0.00027154345,0.000029695637,0.0007353124,0.000043077,0.00014631722,0.00013173195,0.0000042647043],"category_scores_gemma":[0.000013085306,0.00015442049,0.000030418112,0.000013537625,0.0012309743,0.000010075288,0.000315984,0.00015933193,1.5945187e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039032962,0.000016199927,0.017315112,0.00002176568,0.00013441188,4.3291539e-7,0.00020302225,0.000006437709,0.9809918,0.0004983308,0.000004686191,0.0007688113],"study_design_scores_gemma":[0.0020644756,0.00018599116,0.25998524,0.0000117642185,0.00042113804,0.00020303261,0.008135959,0.000058382604,0.7269668,0.0013889079,0.00020944589,0.0003688839],"about_ca_topic_score_codex":0.00014555975,"about_ca_topic_score_gemma":0.00018336758,"teacher_disagreement_score":0.25402495,"about_ca_system_score_codex":0.000009180937,"about_ca_system_score_gemma":0.000009460091,"threshold_uncertainty_score":0.62970847},"labels":[],"label_agreement":null},{"id":"W2588449752","doi":"10.1128/aem.03133-16","title":"Ketoacylsynthase Domains of a Polyunsaturated Fatty Acid Synthase in Thraustochytrium sp. Strain ATCC 26185 Can Effectively Function as Stand-Alone Enzymes in Escherichia coli","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Biochemistry; Complementation; Polyunsaturated fatty acid; ATP synthase; Escherichia coli; Biology; Enzyme; Polyketide synthase; Fatty acid synthase; Fatty acid; Acyl carrier protein; Biosynthesis; Docosahexaenoic acid; Protein subunit; Mutant; Polyketide; Gene","score_opus":0.004122103609934899,"score_gpt":0.19473460065598566,"score_spread":0.19061249704605077,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2588449752","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975567,0.0013928008,0.00012258365,0.00005572607,0.00015689168,0.00037595292,0.0002705859,0.000007629809,0.00006112915],"genre_scores_gemma":[0.9987506,0.0004740692,0.00018947768,0.000056439785,0.00008457646,0.00003165358,0.00035596982,0.000020449988,0.000036728212],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99888635,0.000053087737,0.0002541118,0.00048275187,0.00003377921,0.00028994246],"domain_scores_gemma":[0.99946356,0.0000063391126,0.0001504265,0.00031864017,0.000004465461,0.000056570105],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019048271,0.00023536137,0.00031482772,0.00006159667,0.00009255158,0.000014726109,0.00013056389,0.0002744057,0.000016554037],"category_scores_gemma":[0.000024882882,0.00022753539,0.000044107903,0.00004703435,0.0003311594,0.000007218126,0.00011441192,0.00017030856,0.0000034176594],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054271007,0.00016124653,0.0021568786,0.000030049669,0.000044023058,0.0000043332284,0.00006763905,0.000040205265,0.99537736,0.00006594717,0.000019276678,0.0014903496],"study_design_scores_gemma":[0.0018018683,0.000273033,0.062053837,0.00002151284,0.000022295862,0.000026100879,0.00017227497,0.0000038885646,0.9347364,0.000028001548,0.00063144416,0.00022937762],"about_ca_topic_score_codex":0.00023735542,"about_ca_topic_score_gemma":0.0001689495,"teacher_disagreement_score":0.060640976,"about_ca_system_score_codex":0.00004293913,"about_ca_system_score_gemma":0.000027385762,"threshold_uncertainty_score":0.9278624},"labels":[],"label_agreement":null},{"id":"W2588502186","doi":"10.1128/aem.03319-16","title":"Plant Community and Nitrogen Deposition as Drivers of Alpha and Beta Diversities of Prokaryotes in Reconstructed Oil Sand Soils and Natural Boreal Forest Soils","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Montréal; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Soil water; Taiga; Environmental science; Nitrogen; BETA (programming language); Deposition (geology); Alpha (finance); Environmental chemistry; Ecology; Soil science; Biology; Chemistry; Mathematics; Paleontology","score_opus":0.005722790118320815,"score_gpt":0.18216303395083797,"score_spread":0.17644024383251716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2588502186","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99879307,0.00017912211,5.3616895e-7,0.000038653532,0.000025691033,0.00011374077,0.0001741449,0.0000036572976,0.0006714022],"genre_scores_gemma":[0.99869716,0.00080624886,0.00014921062,0.00006446896,0.00000415062,0.0000038109338,0.00026159812,0.0000050526974,0.000008311071],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993043,0.00013200732,0.00017643557,0.00018697801,0.000020382235,0.00017987452],"domain_scores_gemma":[0.9994785,0.0001274756,0.00016276956,0.00018549748,0.0000010610962,0.000044695527],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00013538591,0.00014645307,0.00029258817,0.00003424064,0.00043484836,0.000008899441,0.00015160801,0.00016129045,0.000045897952],"category_scores_gemma":[0.000004674003,0.00013938059,0.000016840275,0.000012923494,0.003227057,0.00009869207,0.0007714209,0.0002526222,0.0000015072453],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013147267,0.00004984406,0.43073818,0.00003034641,0.00002839949,0.000001546966,0.0009952346,0.0000014183298,0.5651404,0.000092729606,0.000014362238,0.0027760642],"study_design_scores_gemma":[0.001256787,0.00023988224,0.95187294,0.00002073268,0.000037151323,0.00012748402,0.0014136257,0.000019134694,0.043010034,0.0017983944,0.000031739914,0.00017210584],"about_ca_topic_score_codex":0.0029890705,"about_ca_topic_score_gemma":0.003111523,"teacher_disagreement_score":0.52213037,"about_ca_system_score_codex":0.000023114259,"about_ca_system_score_gemma":0.0000038704875,"threshold_uncertainty_score":0.9994856},"labels":[],"label_agreement":null},{"id":"W2591278429","doi":"10.1128/aem.00061-17","title":"Metatranscriptomic Profiling Reveals Linkages between the Active Rumen Microbiome and Feed Efficiency in Beef Cattle","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":359,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Alberta Innovates - Technology Futures; Natural Sciences and Engineering Research Council of Canada; Alberta Livestock and Meat Agency; Government of Canada","keywords":"Biology; Lachnospiraceae; Rumen; Firmicutes; Microbiome; Ruminococcus; Bacteroidetes; Metagenomics; Proteobacteria; Euryarchaeota; Bacterial phyla; Microbiology; Beef cattle; 16S ribosomal RNA; Food science; Bacteria; Biochemistry; Animal science; Fermentation; Genetics; Gene","score_opus":0.012868705807306464,"score_gpt":0.2080274396097305,"score_spread":0.19515873380242404,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2591278429","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99761266,0.00035993938,0.0000011413831,0.001109875,0.000037725218,0.00033011808,0.0002552181,0.000010052522,0.0002832856],"genre_scores_gemma":[0.99908364,0.0003256933,0.000033197168,0.00020728368,0.00006212984,0.000027693706,0.00020688213,0.0000015340152,0.00005196109],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99910474,0.00005743864,0.0001692769,0.00036610986,0.000021396223,0.00028105508],"domain_scores_gemma":[0.9996374,0.00012949943,0.00010345319,0.000080255864,0.000001969423,0.000047392285],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013837051,0.00015734819,0.0002504546,0.000013191002,0.0004901156,0.000036290476,0.0002194431,0.00012563757,0.000029009956],"category_scores_gemma":[0.000005331401,0.00006411353,0.000034074114,0.000028247332,0.00061841606,0.000053543357,0.00016148601,0.0001474508,0.000015906122],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014514768,0.000043692384,0.03422416,0.00000406362,0.000010965251,6.836849e-7,0.00007410005,1.5218166e-7,0.9597479,0.00012415712,0.000016660406,0.0057389652],"study_design_scores_gemma":[0.00037004158,0.00010455099,0.896198,0.0000060280195,0.0000144431015,0.000013172064,0.00041740993,7.279291e-7,0.100623146,0.0007861624,0.0013185124,0.0001478277],"about_ca_topic_score_codex":0.000072982046,"about_ca_topic_score_gemma":0.000017980563,"teacher_disagreement_score":0.8619738,"about_ca_system_score_codex":0.000018934581,"about_ca_system_score_gemma":0.0000018793991,"threshold_uncertainty_score":0.37696224},"labels":[],"label_agreement":null},{"id":"W2592440669","doi":"10.1128/aem.00062-17","title":"Mechanisms of Inactivation of Dry Escherichia coli by High-Pressure Carbon Dioxide","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Inactivation Methods","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Alberta Innovates Bio Solutions; Alberta Innovates - Health Solutions","keywords":"Escherichia coli; Supercritical fluid; Chemistry; Supercritical carbon dioxide; Bacteria; Mutant; Carbon dioxide; Microbiology; Biochemistry; Biology; Gene; Organic chemistry","score_opus":0.004539813945060251,"score_gpt":0.2062140433018265,"score_spread":0.20167422935676624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2592440669","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961305,0.000117912496,0.0031609188,0.000030691448,0.000053597498,0.00016121045,0.00012193685,0.000002795414,0.0002203881],"genre_scores_gemma":[0.9958994,0.00006998737,0.0036011206,0.0000679929,0.000016516022,0.000010548546,0.00024987306,0.000013319482,0.00007128422],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993778,0.000041645435,0.00018670074,0.00025125124,0.00002359675,0.00011901882],"domain_scores_gemma":[0.9993424,0.0000095740525,0.00029351003,0.00032142055,0.000006189443,0.000026904356],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010774289,0.00012298366,0.00019857763,0.000017564735,0.000066464265,0.0000041371823,0.00013570346,0.00020815183,0.000017293994],"category_scores_gemma":[0.000015126365,0.00012307713,0.000025960044,0.000011662897,0.00030730522,0.0000031772963,0.00025316386,0.000068306435,4.3722994e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008132075,0.00006195131,0.0011379753,0.000017805773,0.000057341647,1.08656025e-7,0.00002119068,0.000009251966,0.9977079,0.0005073424,0.000027155409,0.00037062648],"study_design_scores_gemma":[0.00049121445,0.00011407387,0.008271858,0.000003987127,0.000023042996,0.000001285417,0.00006814047,0.0000046525956,0.98983747,0.00038654468,0.00068414566,0.000113587535],"about_ca_topic_score_codex":0.000104679995,"about_ca_topic_score_gemma":0.0000028474706,"teacher_disagreement_score":0.007870463,"about_ca_system_score_codex":0.000008871906,"about_ca_system_score_gemma":0.000008860128,"threshold_uncertainty_score":0.501894},"labels":[],"label_agreement":null},{"id":"W2601951358","doi":"10.1128/aem.00547-17","title":"Enterobius vermicularis as a Novel Surrogate for the Presence of Helminth Ova in Tertiary Wastewater Treatment Plants","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Healthcare and Environmental Waste Management","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta","funders":"City of Calgary; Canada Foundation for Innovation; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Enterobius; Wastewater; Helminths; Sewage treatment; Biology; Sewage; Biotechnology; Microbiology; Environmental engineering; Immunology; Environmental science","score_opus":0.01586475356658184,"score_gpt":0.248117317151764,"score_spread":0.23225256358518215,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2601951358","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99712276,0.0002826669,0.000022283044,0.0010976658,0.000076014985,0.001036302,0.00012091337,0.0000043075843,0.00023709817],"genre_scores_gemma":[0.99788326,0.0008742434,0.00016595155,0.00038164447,0.000028132805,0.00012853926,0.00012372024,0.000014595691,0.00039990485],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999141,0.000011956229,0.00022947391,0.00030562605,0.000038918923,0.0002730344],"domain_scores_gemma":[0.99940354,0.00004656429,0.00009784369,0.00039361147,6.5633384e-7,0.000057772853],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000098310054,0.00016820797,0.00026524952,0.000033250042,0.00013821555,0.000009123411,0.00012499183,0.00008818959,0.000034842677],"category_scores_gemma":[0.0000026874748,0.00010890153,0.000057277834,0.000006485713,0.00034098342,0.000027381075,0.0001938907,0.00006996834,0.00001864894],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004223536,0.0003517439,0.025971573,0.00006457426,0.00013594933,0.000016767937,0.00064434623,0.000014070664,0.95299274,0.000032333428,0.000060125472,0.01929343],"study_design_scores_gemma":[0.01449663,0.0019824812,0.5091184,0.00019763224,0.00026354488,0.00044106925,0.0048517883,0.000219485,0.43503174,0.00011181463,0.032809123,0.00047632595],"about_ca_topic_score_codex":0.00029688823,"about_ca_topic_score_gemma":0.00004211802,"teacher_disagreement_score":0.517961,"about_ca_system_score_codex":0.00009182258,"about_ca_system_score_gemma":0.0000067902956,"threshold_uncertainty_score":0.44408754},"labels":[],"label_agreement":null},{"id":"W2602509705","doi":"10.1128/aem.00275-17","title":"The Tale of a Neglected Energy Source: Elevated Hydrogen Exposure Affects both Microbial Diversity and Function in Soil","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Microcosm; Abiotic component; Biogeochemical cycle; Soil water; Microbial population biology; Microorganism; Environmental chemistry; Nutrient; Biology; Ecology; Environmental science; Chemistry; Bacteria","score_opus":0.003361456143610772,"score_gpt":0.1486342891407219,"score_spread":0.14527283299711113,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2602509705","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99932164,0.00015039422,0.000026541278,0.000048804013,0.000059519807,0.00014806155,0.000021009851,0.0000074368295,0.00021657233],"genre_scores_gemma":[0.9990637,0.00056494685,0.000018525694,0.00008878439,0.00002273852,0.0000051937427,0.000060289072,0.000008528281,0.00016729787],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992343,0.000041602958,0.00014346051,0.0003030761,0.00004200303,0.00023552365],"domain_scores_gemma":[0.99956954,0.000031128093,0.00015634447,0.00019664773,6.583242e-7,0.000045707275],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009973019,0.0001439042,0.00015564494,0.000018554161,0.0009003003,0.000018351855,0.00017176359,0.00014347605,0.00008641474],"category_scores_gemma":[0.0000035757628,0.00011248367,0.000026586004,0.000028668195,0.00076386705,0.00005898267,0.0010225589,0.000089660825,0.000009363605],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009171145,0.000043845972,0.07531214,0.0000044884528,0.000012005052,8.997754e-7,0.00017878915,0.00001883237,0.9173902,0.0000103029615,0.00014030297,0.006796471],"study_design_scores_gemma":[0.002222219,0.00033122284,0.5898484,0.000009643692,0.000045752142,0.000036537847,0.00023286245,0.00009666198,0.39664045,0.00020159213,0.009983197,0.00035142832],"about_ca_topic_score_codex":0.0007679202,"about_ca_topic_score_gemma":0.0009881111,"teacher_disagreement_score":0.52074975,"about_ca_system_score_codex":0.00005248123,"about_ca_system_score_gemma":0.0000025993415,"threshold_uncertainty_score":0.6924473},"labels":[],"label_agreement":null},{"id":"W2604642477","doi":"10.1128/aem.00132-17","title":"Experimental Evaluation of Host Adaptation of Lactobacillus reuteri to Different Vertebrate Species","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":107,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Lactobacillus reuteri; Host adaptation; Host (biology); Adaptation (eye); Feces; Rodent; Vertebrate; Lineage (genetic); Zoology; Microbiology; Colonization; Gene; Genetics; Genome; Bacteria; Probiotic; Ecology","score_opus":0.0314969121460191,"score_gpt":0.21834789887915385,"score_spread":0.18685098673313474,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2604642477","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988454,0.0001003,0.000004123728,0.00008048375,0.000058403424,0.00022422943,0.00016970669,0.0000032455066,0.0005140836],"genre_scores_gemma":[0.9996876,0.00003120695,0.000044787088,0.000035262736,0.000022014754,0.000010418798,0.00014501055,7.7060736e-7,0.000022940187],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994876,0.000022007853,0.0001491588,0.00017482747,0.0000562853,0.00011015506],"domain_scores_gemma":[0.99975175,0.00001228627,0.00012311808,0.0000729225,0.000004832792,0.000035072382],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000093945644,0.00009254642,0.0001509448,0.00000760713,0.000117481744,0.000010864608,0.00012745698,0.00006198409,0.00018227543],"category_scores_gemma":[0.0000027792148,0.000042434724,0.000028163866,0.000011469638,0.00017005746,0.000026793472,0.00014976948,0.000030897816,0.0000054959783],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036310994,0.00010148972,0.0024370244,0.0000020339567,0.000012880994,8.555554e-8,0.00013958673,0.0000059798954,0.98761535,0.00016714446,0.000008871746,0.00947325],"study_design_scores_gemma":[0.00031780504,0.00033356136,0.2779149,0.000006272836,0.00001579725,0.00000194435,0.0008059125,0.00008073176,0.7197591,0.000041548265,0.0006335629,0.00008881511],"about_ca_topic_score_codex":0.000030881427,"about_ca_topic_score_gemma":0.000033616394,"teacher_disagreement_score":0.2754779,"about_ca_system_score_codex":0.000024526647,"about_ca_system_score_gemma":0.0000014809295,"threshold_uncertainty_score":0.1995788},"labels":[],"label_agreement":null},{"id":"W2604652079","doi":"10.1128/aem.00258-17","title":"Airborne Pathogens inside Automobiles for Domestic Use: Assessing In-Car Air Decontamination Devices Using Staphylococcus aureus as the Challenge Bacterium","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Indoor Air Quality and Microbial Exposure","field":"Environmental Science","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Human decontamination; Aerosolization; HEPA; Staphylococcus aureus; Environmental science; Airborne transmission; Bacteria; Waste management; Biology; Medicine; Inhalation; Computer science; Coronavirus disease 2019 (COVID-19); Engineering","score_opus":0.017613231755364403,"score_gpt":0.25509338975207224,"score_spread":0.23748015799670785,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2604652079","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980546,0.000102827486,0.00020198716,0.00036173474,0.0001478038,0.00070956605,0.00011473805,0.000016966935,0.00028974534],"genre_scores_gemma":[0.9981559,0.00008350171,0.0007757585,0.0006837416,0.00005883968,0.00006367308,0.00010734675,0.000025508936,0.000045757086],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985807,0.0000830654,0.00031655678,0.0005310059,0.000054185137,0.0004345155],"domain_scores_gemma":[0.99912286,0.00015120755,0.0002601546,0.00040306506,0.0000021434341,0.00006059995],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003732557,0.0002616882,0.00027964712,0.000035210593,0.0008291599,0.00010569211,0.00031557138,0.00022048393,0.00012630894],"category_scores_gemma":[0.000023197243,0.00021059514,0.00006357233,0.000027497623,0.00078340777,0.00033869187,0.00038638522,0.00018788684,0.00004521155],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000316411,0.00010513266,0.010916898,0.000018151613,0.000019113626,0.0000081677945,0.0007627847,0.00021083344,0.9801867,0.00019771175,0.000022922508,0.0075199637],"study_design_scores_gemma":[0.002494471,0.0002753305,0.9142043,0.00005904871,0.0001119312,0.0001196699,0.0020377843,0.000387674,0.048451554,0.001078867,0.029895702,0.00088369293],"about_ca_topic_score_codex":0.0003819129,"about_ca_topic_score_gemma":0.0006840988,"teacher_disagreement_score":0.9317351,"about_ca_system_score_codex":0.00020937307,"about_ca_system_score_gemma":0.00001402328,"threshold_uncertainty_score":0.85878205},"labels":[],"label_agreement":null},{"id":"W2605287622","doi":"10.1128/aem.00505-17","title":"New Insights into PhaM-PhaC-Mediated Localization of Polyhydroxybutyrate Granules in Ralstonia eutropha H16","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"biodegradable polymer synthesis and properties","field":"Materials Science","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Deutsche Forschungsgemeinschaft; Public Health Agency of Canada","keywords":"Polyhydroxybutyrate; Ralstonia; Nucleoid; Granule (geology); Cell division; Population; Biochemistry; Lysine; Biology; Chemistry; Bacteria; Gene; Escherichia coli; Cell; Amino acid; Genetics","score_opus":0.007061076409774945,"score_gpt":0.18676217033938397,"score_spread":0.17970109392960903,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2605287622","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9921402,0.0070000985,0.00024224071,0.00010766036,0.00011631786,0.000118921445,0.000032013348,0.0000122647,0.00023032745],"genre_scores_gemma":[0.9985514,0.00079761277,0.00032385578,0.0001233925,0.000029053235,0.00000937535,0.00005700388,0.000012324103,0.00009596574],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991528,0.000041237297,0.00025994913,0.00029918694,0.000038099053,0.00020877691],"domain_scores_gemma":[0.99949646,0.000024451894,0.00016632954,0.00025303205,0.0000015398758,0.000058157726],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008615794,0.00016146165,0.0002796165,0.000040270694,0.00021531692,0.000029882647,0.00022802086,0.00013530423,0.00022425354],"category_scores_gemma":[0.0000041833655,0.00012471963,0.000023992454,0.000018761793,0.000513893,0.0000971195,0.00015900936,0.00005798387,0.000074880016],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007275722,0.000041752854,0.002452652,0.000013705935,0.000006549652,0.0000014971974,0.00048744018,0.0000035183864,0.98770094,0.00014142386,0.00004595129,0.009031818],"study_design_scores_gemma":[0.00065308553,0.000051741707,0.0029835075,0.000015389727,0.000010358826,0.0000050422427,0.00011036336,0.000049084767,0.99213535,0.00036013048,0.0034683743,0.00015755092],"about_ca_topic_score_codex":0.0011211529,"about_ca_topic_score_gemma":0.00014244793,"teacher_disagreement_score":0.008874267,"about_ca_system_score_codex":0.000024250472,"about_ca_system_score_gemma":0.000014362668,"threshold_uncertainty_score":0.5085919},"labels":[],"label_agreement":null},{"id":"W2606056116","doi":"10.1128/aem.00073-17","title":"Interaction between 2,4-Diacetylphloroglucinol- and Hydrogen Cyanide-Producing Pseudomonas brassicacearum LBUM300 and Clavibacter michiganensis subsp. michiganensis in the Tomato Rhizosphere","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Moncton","funders":"","keywords":"Clavibacter michiganensis; Rhizosphere; Biology; Microbiology; Population; Mutant; Gene; Bacteria; Genetics; Pathogen","score_opus":0.011231309621280262,"score_gpt":0.19080883084380376,"score_spread":0.1795775212225235,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2606056116","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969186,0.0005289399,1.1761526e-7,0.0018774945,0.000045744935,0.00029164017,0.000197576,0.000017340128,0.00012250105],"genre_scores_gemma":[0.9985618,0.0007382564,0.000049550094,0.00028932304,0.00012722088,0.000018579236,0.00018479433,0.0000031469497,0.000027311295],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99875176,0.00007292798,0.00023137721,0.0005656424,0.00004384239,0.00033442574],"domain_scores_gemma":[0.9994553,0.00018487868,0.00015226482,0.0001455705,0.0000020736695,0.00005994081],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020950129,0.0002491521,0.00033256516,0.000013438901,0.0005596612,0.00009691253,0.00020427884,0.00016474415,0.000025159292],"category_scores_gemma":[0.00000924416,0.000111046036,0.00003668987,0.00003185151,0.00041249013,0.00011194244,0.00035729035,0.00019943748,0.000016998743],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026972628,0.000025554937,0.113431826,0.000005098824,0.000032543452,0.000005024313,0.00040578755,8.128415e-8,0.8770698,0.000015264714,0.00005030566,0.0089317495],"study_design_scores_gemma":[0.0003461718,0.00008729857,0.9438958,0.000017453825,0.000049071125,0.00025156816,0.0015855024,0.0000021920787,0.048092343,0.00009101098,0.0053163986,0.00026516928],"about_ca_topic_score_codex":0.00018301827,"about_ca_topic_score_gemma":0.000775597,"teacher_disagreement_score":0.830464,"about_ca_system_score_codex":0.000017201673,"about_ca_system_score_gemma":0.0000016401337,"threshold_uncertainty_score":0.45283258},"labels":[],"label_agreement":null},{"id":"W2626417943","doi":"10.1128/aem.00989-17","title":"Novel Antibiotic Resistance Determinants from Agricultural Soil Exposed to Antibiotics Widely Used in Human Medicine and Animal Farming","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Western University; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Government of Canada","keywords":"Antibiotics; Agriculture; Antibiotic resistance; Biology; Animal agriculture; Biotechnology; Human medicine; Veterinary medicine; Medicine; Microbiology; Ecology; Traditional medicine","score_opus":0.02929301646427209,"score_gpt":0.267031004952915,"score_spread":0.2377379884886429,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2626417943","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99780524,0.000089763096,0.00002343428,0.00051665714,0.0000675663,0.0003300479,0.000097413,0.000016648011,0.0010532144],"genre_scores_gemma":[0.998255,0.00012255342,0.0006252882,0.0006713675,0.000052839165,0.0000010490787,0.000056942954,0.000023752495,0.00019121612],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9981468,0.000028793605,0.00036891364,0.00077953376,0.000107452375,0.0005685112],"domain_scores_gemma":[0.99915636,0.00005851266,0.00016262001,0.00033227427,5.5318753e-7,0.0002897049],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001508317,0.0003610924,0.0004459642,0.00003869877,0.0004866623,0.000051753683,0.00033697885,0.0001705441,0.00017383735],"category_scores_gemma":[0.00001494737,0.00029094634,0.000030832558,0.000041642274,0.0018605276,0.00017183281,0.0008272965,0.00021470683,0.000077817946],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003905662,0.00012280472,0.15720965,0.00000862548,0.000009546599,0.0000187638,0.00033770144,0.000006612759,0.8412275,0.000032470118,0.00005741373,0.00092987495],"study_design_scores_gemma":[0.0015067151,0.000121634876,0.686252,0.00006597609,0.000025704247,0.000029634513,0.00042352697,0.000017002008,0.31064945,0.00006468175,0.00049262674,0.00035101894],"about_ca_topic_score_codex":0.00032823905,"about_ca_topic_score_gemma":0.00052895054,"teacher_disagreement_score":0.530578,"about_ca_system_score_codex":0.0001221998,"about_ca_system_score_gemma":0.0000019327492,"threshold_uncertainty_score":0.9999543},"labels":[],"label_agreement":null},{"id":"W2727192556","doi":"10.1128/aem.01015-17","title":"Bacteriocins of Non-aureus Staphylococci Isolated from Bovine Milk","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Bacteriocin; Biology; Microbiology; Staphylococcus aureus; Mastitis; Genome; Udder; Bacteria; Antimicrobial; Gene; Genetics","score_opus":0.0054312401754631695,"score_gpt":0.17143030413095792,"score_spread":0.16599906395549474,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2727192556","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978983,0.00010298524,0.0000046436876,0.0001408299,0.000066159206,0.000146092,0.00072610634,0.000008399751,0.00090650795],"genre_scores_gemma":[0.99887127,0.00019286679,0.00009216925,0.00013305816,0.00005726208,0.0000033746178,0.0005757197,0.0000013133335,0.00007299508],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993215,0.000010448213,0.00016747945,0.00027529025,0.000023561894,0.0002016785],"domain_scores_gemma":[0.99965763,0.000023707453,0.00014393903,0.000114833434,0.000001925025,0.000057936544],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004243125,0.00013853364,0.00021090043,0.0000057446277,0.00021642882,0.000023563587,0.0002478574,0.00014817581,0.0003571716],"category_scores_gemma":[0.000001480519,0.00006191478,0.000043552933,0.000013919327,0.00029881485,0.00003248398,0.00025480476,0.00008886896,0.000028470844],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054176002,0.00007692235,0.009956688,0.0000018886916,0.000029125224,0.0000011571268,0.000034288587,1.5523494e-7,0.98108417,0.00002831962,0.00006349034,0.0086695915],"study_design_scores_gemma":[0.00059039885,0.0005412007,0.8093147,0.000011269077,0.000027008675,0.000005259673,0.00019821063,0.00002814057,0.17908885,0.00024280009,0.009685283,0.00026686752],"about_ca_topic_score_codex":0.00019662602,"about_ca_topic_score_gemma":0.00005871342,"teacher_disagreement_score":0.80199534,"about_ca_system_score_codex":0.000010471779,"about_ca_system_score_gemma":0.0000015383482,"threshold_uncertainty_score":0.39107788},"labels":[],"label_agreement":null},{"id":"W2731591834","doi":"10.1128/aem.01107-17","title":"Initial Gut Microbial Composition as a Key Factor Driving Host Response to Antibiotic Treatment, as Exemplified by the Presence or Absence of Commensal Escherichia coli","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; University of Alberta","funders":"Alberta Innovates - Technology Futures; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Antibiotics; Escherichia coli; Microbiology; Metronidazole; Gut flora; Microbiome; Context (archaeology); Host (biology); Antimicrobial; Bacteria; Immunology; Biochemistry; Ecology; Genetics; Gene","score_opus":0.011262375334107707,"score_gpt":0.2635854663473437,"score_spread":0.25232309101323597,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2731591834","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99785686,0.00009934431,0.00004776086,0.0006217575,0.00010748809,0.0005988709,0.0005138982,0.000006800426,0.00014723401],"genre_scores_gemma":[0.99774647,0.00019586181,0.00022864646,0.001039627,0.000056973302,0.00001597345,0.0003252021,0.000023032997,0.00036821372],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99879116,0.000112306436,0.0002471185,0.00046430042,0.000035326582,0.00034978814],"domain_scores_gemma":[0.9991444,0.000060853625,0.0001939431,0.00048368395,0.00000611847,0.000111008936],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011097036,0.00025271685,0.0002710897,0.00002490035,0.0004974695,0.00003799535,0.00030004457,0.00021303531,0.00005472771],"category_scores_gemma":[0.00001832898,0.00018760125,0.000054240318,0.000020567071,0.00062075147,0.0000064755727,0.00031626187,0.00010357996,0.000045274814],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018520164,0.000170716,0.001899334,0.000009336822,0.00005273486,0.0000036725924,0.00036392227,9.1127015e-7,0.994433,0.000015844198,0.0008279355,0.00037058562],"study_design_scores_gemma":[0.0014630331,0.0013959926,0.036601707,0.00001932831,0.00002137501,0.00011223191,0.0002540172,0.0000011390548,0.9411821,0.0000035036658,0.01869904,0.00024655447],"about_ca_topic_score_codex":0.00021371726,"about_ca_topic_score_gemma":0.000052546362,"teacher_disagreement_score":0.053250916,"about_ca_system_score_codex":0.000043300297,"about_ca_system_score_gemma":0.00005708924,"threshold_uncertainty_score":0.7650157},"labels":[],"label_agreement":null},{"id":"W2740617742","doi":"10.1128/aem.01169-17","title":"Coronafacoyl Phytotoxin Biosynthesis and Evolution in the Common Scab Pathogen Streptomyces scabiei","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Phytotoxin; Coronatine; Biology; Gene cluster; Pseudomonas syringae; Streptomyces; Gene; Genetics; Biosynthesis; Streptomyces coelicolor; Streptomycetaceae; Microbiology; Arabidopsis; Mutant; Biochemistry; Actinomycetales; Bacteria; Toxin","score_opus":0.00605051563828313,"score_gpt":0.17466654218386932,"score_spread":0.1686160265455862,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2740617742","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978542,0.00088179286,2.1843401e-7,0.00037031932,0.000016311416,0.00016357341,0.00042109462,0.0000056742183,0.00028686068],"genre_scores_gemma":[0.99888015,0.00071196264,0.000011588909,0.000170099,0.00003739315,0.000015627862,0.00015863599,6.7405125e-7,0.000013872056],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99942744,0.00003772854,0.00009814305,0.00022631853,0.0000305038,0.00017988727],"domain_scores_gemma":[0.9997587,0.00006790008,0.00006187438,0.000077084645,6.2782266e-7,0.000033774682],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009714881,0.00010751318,0.0001243442,0.000005554967,0.00035490014,0.00004149445,0.00017902005,0.0000806152,0.000027298405],"category_scores_gemma":[0.0000021730066,0.000041952047,0.000021018195,0.000014133022,0.0003129332,0.000031957043,0.000097811724,0.000057473146,0.000010881959],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019394776,0.000045496836,0.11086839,0.000002578112,0.000004656588,0.000002902391,0.000028956763,2.6220224e-7,0.8681325,0.00006474282,0.00003186024,0.02079829],"study_design_scores_gemma":[0.00014155495,0.000042543204,0.9901632,0.000006257094,0.0000104955,0.000019276113,0.0005513733,0.0000033999377,0.005955028,0.00044993445,0.0025458417,0.000111115165],"about_ca_topic_score_codex":0.00006254535,"about_ca_topic_score_gemma":0.00044893293,"teacher_disagreement_score":0.8792948,"about_ca_system_score_codex":0.000012663028,"about_ca_system_score_gemma":0.0000011027037,"threshold_uncertainty_score":0.27296406},"labels":[],"label_agreement":null},{"id":"W2741263093","doi":"10.1128/aem.01148-17","title":"Repression of Salmonella Host Cell Invasion by Aromatic Small Molecules from the Human Fecal Metabolome","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro; Ministério da Ciência, Tecnologia e Inovação; Government of Canada","keywords":"Metabolome; Human feces; Salmonella; Host (biology); Feces; Biology; Psychological repression; Enterobacteriaceae; Microbiology; Computational biology; Bacteria; Metabolomics; Chemistry; Genetics; Escherichia coli; Bioinformatics; Gene; Gene expression","score_opus":0.007671650815823966,"score_gpt":0.20313553086382358,"score_spread":0.1954638800479996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2741263093","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970367,0.0018800528,0.000057506808,0.000113994516,0.000048290924,0.00021046752,0.00025189313,0.0000037496711,0.0003973718],"genre_scores_gemma":[0.99719906,0.00084136246,0.0003045591,0.0003162458,0.00005071475,0.000010229525,0.0011233066,0.000017664406,0.00013685426],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99909866,0.000052504933,0.00021867422,0.0003968057,0.000024361356,0.00020901112],"domain_scores_gemma":[0.9991471,0.000017781409,0.00022130474,0.000558721,0.0000016503051,0.000053435724],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010058812,0.00017414712,0.0002186597,0.000010121815,0.00035786722,0.000017320139,0.0003110876,0.00021303422,0.000026265818],"category_scores_gemma":[0.000004165531,0.00012609242,0.00005350613,0.000006872046,0.00046715848,0.0000022336908,0.0004046292,0.000107536835,0.00001297793],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027620552,0.000086771615,0.005521863,0.000010464403,0.000025214758,6.007535e-7,0.00006456292,9.147685e-7,0.9928668,0.0000117152995,0.0010848612,0.00029861552],"study_design_scores_gemma":[0.00073449063,0.00011066636,0.056223653,0.000010073712,0.000033754066,0.000009213969,0.00015472397,0.0000013786644,0.9350462,0.00007530497,0.0074429754,0.00015753855],"about_ca_topic_score_codex":0.00016269533,"about_ca_topic_score_gemma":0.000020188203,"teacher_disagreement_score":0.05782057,"about_ca_system_score_codex":0.000007582719,"about_ca_system_score_gemma":0.000007893115,"threshold_uncertainty_score":0.51418996},"labels":[],"label_agreement":null},{"id":"W2742247528","doi":"10.1128/aem.01323-17","title":"A Commensal Bifidobacterium longum Strain Prevents Gluten-Related Immunopathology in Mice through Expression of a Serine Protease Inhibitor","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Celiac Disease Research and Management","field":"Medicine","cited_by":70,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Population Health Research Institute","funders":"Canadian Institutes of Health Research; Government of Canada; Nestlé Health Science","keywords":"Bifidobacterium longum; Serine protease; Bifidobacterium; Microbiology; Strain (injury); Protease; Biology; Protease inhibitor (pharmacology); Bacteria; Gluten; Immunopathology; Immunology; Biochemistry; Enzyme; Lactobacillus; Genetics; Virus","score_opus":0.008148055532338504,"score_gpt":0.2414216653967033,"score_spread":0.2332736098643648,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2742247528","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974456,0.00031100668,0.000015085533,0.00036600727,0.000052841475,0.0010043025,0.00017100951,0.000010561934,0.0006236126],"genre_scores_gemma":[0.99840915,0.00040410637,0.00031988454,0.00011961963,0.000025664722,0.00009162498,0.00044652837,0.000016271868,0.00016714925],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989584,0.00004987815,0.00028616504,0.00033611464,0.00005113911,0.00031832236],"domain_scores_gemma":[0.99940675,0.000013507282,0.00014479725,0.0003421926,0.0000027068277,0.000090025096],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013590661,0.0001681156,0.00033279546,0.00005619083,0.00009011054,0.00000901777,0.00012666672,0.00012924938,0.000103830855],"category_scores_gemma":[0.000009672017,0.00014509968,0.0000468472,0.000021044658,0.0004706911,0.000057944482,0.00045519773,0.00018154466,0.000017716851],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00067659805,0.0005076878,0.009769781,0.00012861744,0.00003728486,0.000063277286,0.00020328323,5.783616e-7,0.98569876,0.00004064245,0.00016900842,0.0027044907],"study_design_scores_gemma":[0.0134628825,0.0010458751,0.4590976,0.00027607536,0.00009508171,0.00021419795,0.0007997998,0.000010602498,0.5163215,0.00037323538,0.0079030385,0.00040013937],"about_ca_topic_score_codex":0.0000466904,"about_ca_topic_score_gemma":0.0000024975243,"teacher_disagreement_score":0.46937725,"about_ca_system_score_codex":0.00005246407,"about_ca_system_score_gemma":0.000016192927,"threshold_uncertainty_score":0.5916993},"labels":[],"label_agreement":null},{"id":"W2743229958","doi":"10.1128/aem.01383-17","title":"A Novel Colletotrichum graminicola Raffinose Oxidase in the AA5 Family","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Academy of Finland","keywords":"Raffinose; Biology; Microbiology; Botany; Biochemistry","score_opus":0.008284531625259167,"score_gpt":0.1975576480206681,"score_spread":0.18927311639540895,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2743229958","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99722874,0.00057667366,0.000030070201,0.000069035756,0.000044668846,0.00022350841,0.0008417976,0.0000029046068,0.0009825878],"genre_scores_gemma":[0.9977099,0.00037893027,0.0001022042,0.0010219347,0.000059463116,0.00004082735,0.0005851076,0.000009040532,0.00009260536],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99930316,0.000022283442,0.00012214074,0.00030721142,0.000025409525,0.00021981282],"domain_scores_gemma":[0.9995357,0.000015101003,0.00006622556,0.00034037608,0.0000011399765,0.00004147839],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000100787875,0.00014138577,0.00012606721,0.000019081568,0.00022908986,0.000032593987,0.00027234489,0.0001288282,0.0000068381773],"category_scores_gemma":[0.000008411136,0.00010462161,0.00004072803,0.000011983952,0.00027097826,0.0000024359254,0.0001961937,0.00007625169,0.0000142643385],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006350785,0.00015805213,0.005179783,0.0000034897091,0.000014195161,0.000009049554,0.00002535525,0.0000020011694,0.9927816,0.00008368198,0.0005423422,0.0011369456],"study_design_scores_gemma":[0.003214031,0.00032188118,0.85582197,0.000008414691,0.00004911409,0.0003491732,0.00077856856,0.000012833267,0.04959326,0.000052418392,0.08926733,0.00053100125],"about_ca_topic_score_codex":0.000014655355,"about_ca_topic_score_gemma":0.000018939561,"teacher_disagreement_score":0.9431883,"about_ca_system_score_codex":0.00000705597,"about_ca_system_score_gemma":0.000009782272,"threshold_uncertainty_score":0.42663455},"labels":[],"label_agreement":null},{"id":"W2743542260","doi":"10.1128/aem.01087-17","title":"Evidence for Borrelia bavariensis Infections of Ixodes uriae within Seabird Colonies of the North Atlantic Ocean","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Environment and Climate Change Canada; Université de Montréal; Public Health Agency of Canada; Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada; Memorial University of Newfoundland; Government of Canada; Public Health Agency of Canada","keywords":"Seabird; Borrelia; Borrelia garinii; Biology; Ixodes; Zoology; Tick; Borrelia burgdorferi; Ecology; Genetics","score_opus":0.014055256477727197,"score_gpt":0.21982933706755411,"score_spread":0.2057740805898269,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2743542260","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99785733,0.00079114054,0.000024687582,0.000077737524,0.00038006116,0.0004692948,0.00032861216,0.000016278584,0.00005487157],"genre_scores_gemma":[0.9994005,0.00025176848,0.00003216303,0.00007152532,0.000017066603,0.00002939217,0.00009652385,0.0000145210015,0.000086563916],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99912196,0.00006167126,0.0002931009,0.00028603338,0.000013685465,0.00022353987],"domain_scores_gemma":[0.9988819,0.00024893417,0.00039254286,0.0004475,0.000011037041,0.000018129587],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010725171,0.00017322044,0.00032384173,0.000037929614,0.000523909,0.000009123651,0.00027331914,0.00017437042,0.00005607315],"category_scores_gemma":[0.000091494876,0.00012924228,0.000107626955,0.000026606993,0.0018893473,0.000051501327,0.0002749216,0.0001259912,0.000014707706],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000109483844,0.00011975247,0.47525257,0.000029896162,0.00013483372,1.3764915e-7,0.00017339633,0.00001642703,0.52345675,0.0002785919,0.0003219561,0.00010622664],"study_design_scores_gemma":[0.0010613551,0.00034295846,0.81508297,0.000045383982,0.00023267817,0.00006962557,0.00016847279,0.0000019726494,0.1809973,0.00018634948,0.0016255117,0.00018541211],"about_ca_topic_score_codex":0.00028314092,"about_ca_topic_score_gemma":0.00035018811,"teacher_disagreement_score":0.34245944,"about_ca_system_score_codex":0.000029254197,"about_ca_system_score_gemma":0.000032286902,"threshold_uncertainty_score":0.6961379},"labels":[],"label_agreement":null},{"id":"W2744480780","doi":"10.1128/aem.01378-17","title":"Induction of Shiga Toxin-Encoding Prophage by Abiotic Environmental Stress in Food","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Alberta Livestock and Meat Agency; Canada Research Chairs","keywords":"Prophage; Toxin; Shiga toxin; Abiotic component; Biology; Environmental stress; Microbiology; Abiotic stress; Genetics; Escherichia coli; Gene; Ecology; Bacteriophage","score_opus":0.006543215182321802,"score_gpt":0.20621020477421706,"score_spread":0.19966698959189524,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2744480780","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99815667,0.0009643336,0.000008531032,0.00004556323,0.000039263676,0.00024161364,0.00021728006,0.0000024560663,0.0003243003],"genre_scores_gemma":[0.99842614,0.0010406226,0.00007850531,0.00004040367,0.000037748192,0.000028853388,0.00024278268,0.00001355491,0.0000914012],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99916553,0.00002899625,0.00016573037,0.00035475986,0.000039508424,0.00024546272],"domain_scores_gemma":[0.99957657,0.000007585532,0.00010666793,0.00026616798,8.381327e-7,0.000042154286],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008959837,0.00014940626,0.00017424328,0.000024785972,0.00015000708,0.000011423739,0.00018338855,0.00015366395,0.000017011984],"category_scores_gemma":[0.000007795464,0.00014267511,0.000029509927,0.000009802827,0.0006303484,0.0000058811734,0.0004268394,0.00011752105,0.0000036350064],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042959266,0.00014028007,0.030489853,0.000016474316,0.00003926064,9.707785e-7,0.000079026,0.000001888764,0.9674483,0.000014066157,0.000059117046,0.0016677927],"study_design_scores_gemma":[0.00085178966,0.00036715082,0.04865483,0.000007774857,0.0000071789345,0.000009823711,0.00042719342,0.0000032994192,0.9478793,0.000025225761,0.0015980705,0.00016836132],"about_ca_topic_score_codex":0.000012858004,"about_ca_topic_score_gemma":0.000018749672,"teacher_disagreement_score":0.019569008,"about_ca_system_score_codex":0.000029329967,"about_ca_system_score_gemma":0.000006345553,"threshold_uncertainty_score":0.58181226},"labels":[],"label_agreement":null},{"id":"W2744653941","doi":"10.1128/aem.00902-17","title":"A Fatty Acyl Coenzyme A Reductase Promotes Wax Ester Accumulation in Rhodococcus jostii RHA1","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Genome Canada","keywords":"Rhodococcus; Coenzyme A; Biochemistry; Reductase; Bacteria; Wax ester; Biosynthesis; Fatty alcohol; Wax; Chemistry; Enzyme; Fatty acid; Biology; Food science","score_opus":0.010358519147673719,"score_gpt":0.22980167738890378,"score_spread":0.21944315824123006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2744653941","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988098,0.0003676071,0.00015725393,0.0001270103,0.00014662709,0.0002618934,0.000049333637,0.000008926799,0.00007154901],"genre_scores_gemma":[0.9983705,0.00022821371,0.0005048625,0.00009247859,0.00020105849,0.000025724761,0.00046999517,0.000016726386,0.0000904082],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99912965,0.000017989654,0.00016841589,0.00043314917,0.000020164945,0.00023060998],"domain_scores_gemma":[0.9995037,0.000002566423,0.00008630198,0.00036032722,0.0000024506683,0.000044675417],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011660986,0.00017216473,0.00016442951,0.000034310175,0.00013553153,0.000027579834,0.00013611127,0.00018447258,0.000018010298],"category_scores_gemma":[0.00001553891,0.00015927185,0.000031539523,0.000014204921,0.00020376279,0.000006693152,0.00017538591,0.00010029936,0.00001610806],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005827345,0.00005807255,0.0024833996,0.000010247264,0.000017480466,0.0000014840392,0.00004911182,0.000018204599,0.99435043,0.000026177846,0.0001797476,0.002747397],"study_design_scores_gemma":[0.000975793,0.00009898994,0.048479415,0.000009505648,0.000016714514,0.00009197602,0.000046764675,0.000011798007,0.935965,0.00005954058,0.013978608,0.000265912],"about_ca_topic_score_codex":0.000034744447,"about_ca_topic_score_gemma":0.000017748534,"teacher_disagreement_score":0.05838542,"about_ca_system_score_codex":0.00001586388,"about_ca_system_score_gemma":0.0000070494143,"threshold_uncertainty_score":0.6494917},"labels":[],"label_agreement":null},{"id":"W2754920787","doi":"10.1128/aem.01561-17","title":"Succinate Transport Is Not Essential for Symbiotic Nitrogen Fixation by Sinorhizobium meliloti or Rhizobium leguminosarum","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Rhizobium leguminosarum; Biology; Sinorhizobium meliloti; Nitrogen fixation; Pisum; Rhizobiaceae; Sativum; Bacteria; Mutant; Sinorhizobium; Microbiology; Symbiosis; Biochemistry; Botany; Gene; Genetics","score_opus":0.008896859080996666,"score_gpt":0.19476490554990114,"score_spread":0.18586804646890448,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2754920787","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954823,0.00008705433,0.0000025503434,0.0016762424,0.00016342073,0.0005614068,0.0018595749,0.000040154486,0.00012726145],"genre_scores_gemma":[0.9966083,0.000048693677,0.00012088603,0.0009525446,0.00017110386,0.000058420166,0.0015858884,0.000005833828,0.00044832635],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99850327,0.000023345126,0.0002855018,0.00063176145,0.000064392196,0.0004917525],"domain_scores_gemma":[0.99942577,0.000083450905,0.00021817061,0.00015772946,0.000006131598,0.00010872288],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012294344,0.0002955093,0.00032627332,0.000012072659,0.0007810068,0.000063692634,0.00038358828,0.000276618,0.000465971],"category_scores_gemma":[0.0000059088134,0.000140971,0.000118770055,0.000026158092,0.00032320994,0.00011565593,0.0001167497,0.00011637483,0.00007611841],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022751206,0.000113136906,0.008269149,0.000012210783,0.000055483877,0.0000018170185,0.00006335592,1.46176715e-8,0.9871176,0.000067899884,0.0015265461,0.0025452743],"study_design_scores_gemma":[0.00082972343,0.0002865087,0.022142567,0.00000630845,0.000087929024,0.000028068825,0.00013689838,0.0000020135246,0.96788746,0.00018534658,0.008028912,0.00037823926],"about_ca_topic_score_codex":0.00015344952,"about_ca_topic_score_gemma":0.00007942931,"teacher_disagreement_score":0.019230114,"about_ca_system_score_codex":0.000043086675,"about_ca_system_score_gemma":0.0000059461204,"threshold_uncertainty_score":0.6006952},"labels":[],"label_agreement":null},{"id":"W2759126185","doi":"10.1128/aem.01523-17","title":"Coadministration of the Campylobacter jejuni N-Glycan-Based Vaccine with Probiotics Improves Vaccine Performance in Broiler Chickens","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"The Metabolomics Innovation Centre; Alberta Livestock and Meat Agency; University of Alberta","funders":"Medical Research Council; Alberta Livestock and Meat Agency; Georgia Research Alliance","keywords":"Campylobacter jejuni; Biology; Microbiology; Broiler; Campylobacter; Campylobacteriosis; Lactobacillus reuteri; Probiotic; Vaccination; Pathogen; Vaccine efficacy; Salmonella; Food science; Bacteria; Virology","score_opus":0.006032870599468898,"score_gpt":0.16848880987980197,"score_spread":0.16245593928033308,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2759126185","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99860716,0.000036431033,8.845142e-7,0.00072392146,0.000053400876,0.00027918917,0.000054414675,0.00000685899,0.00023776079],"genre_scores_gemma":[0.9993189,0.00006364051,0.000036205987,0.0003344483,0.000044460743,0.000013425607,0.00013331161,0.0000017638384,0.000053842803],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991739,0.00003903491,0.00023019628,0.00028641557,0.000029762796,0.00024068155],"domain_scores_gemma":[0.99951446,0.00006052357,0.00022888518,0.00015605635,0.0000035648607,0.00003652571],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001151248,0.00016400056,0.00025030965,0.000008076461,0.00020793504,0.000013885385,0.0002608837,0.00014181278,0.000060065897],"category_scores_gemma":[0.0000050674794,0.000058127964,0.000033190525,0.0000323493,0.00021581676,0.00003935426,0.000104920226,0.00013419695,0.000004415271],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011943136,0.00007105213,0.35930988,0.0000062473696,0.000006752913,4.0780267e-7,0.000016207847,0.000003995087,0.6375205,0.000029630126,0.0000127054,0.00290319],"study_design_scores_gemma":[0.0005818379,0.00043315068,0.9510561,0.000013824853,0.000013230932,0.000021374351,0.00007494334,0.000027388756,0.046069887,0.000029586929,0.001547619,0.00013103939],"about_ca_topic_score_codex":0.00007276789,"about_ca_topic_score_gemma":0.000756784,"teacher_disagreement_score":0.5917462,"about_ca_system_score_codex":0.00002000827,"about_ca_system_score_gemma":0.000006594074,"threshold_uncertainty_score":0.23703896},"labels":[],"label_agreement":null},{"id":"W2760215122","doi":"10.1128/aem.01567-17","title":"A Lytic Providencia rettgeri Virus of Potential Therapeutic Value Is a Deep-Branching Member of the <i>T5virus</i> Genus","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Lytic cycle; Biology; Providencia; Microbiology; Prophage; Phage therapy; Bacteriophage; Bacteria; Siphoviridae; Antibiotic resistance; Antibiotics; Virology; Virus; Genetics; Enterobacteriaceae; Escherichia coli; Gene","score_opus":0.006486185725866757,"score_gpt":0.20394440051922239,"score_spread":0.19745821479335562,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2760215122","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99770075,0.00013486523,0.000074973126,0.00016651145,0.00017602084,0.00029448885,0.0001316827,0.0000057543316,0.0013149506],"genre_scores_gemma":[0.9988452,0.00011561831,0.00017819837,0.0005995386,0.000027195747,0.000012186452,0.000010573946,0.00001650962,0.00019498014],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99907804,0.000036593647,0.00027556106,0.00031768336,0.00005555791,0.00023657468],"domain_scores_gemma":[0.9991243,0.000019653471,0.00032681468,0.0004867833,0.0000011701193,0.00004127712],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009129038,0.00017590342,0.00023854953,0.000014398282,0.00034564352,0.000020734231,0.00039228128,0.000121504985,0.00099603],"category_scores_gemma":[0.000003130994,0.00013069289,0.00011119082,0.00002386401,0.0010448165,0.00010458664,0.000588323,0.00015809476,0.000059812064],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037139936,0.00008481248,0.0020380698,0.000010316219,0.000039481984,9.829853e-7,0.0004393235,0.000024619663,0.99236816,0.000028885857,0.00010944086,0.0048187817],"study_design_scores_gemma":[0.0006073005,0.00007172078,0.15302159,0.000018128281,0.0001085634,0.00011280856,0.00014952855,0.00005427907,0.8371023,0.00024549005,0.00828044,0.00022786125],"about_ca_topic_score_codex":0.00052654074,"about_ca_topic_score_gemma":0.000066349596,"teacher_disagreement_score":0.15526585,"about_ca_system_score_codex":0.000054959703,"about_ca_system_score_gemma":0.000005790051,"threshold_uncertainty_score":0.9999172},"labels":[],"label_agreement":null},{"id":"W2762016299","doi":"10.1128/aem.01773-17","title":"Methanogenic Paraffin Biodegradation: Alkylsuccinate Synthase Gene Quantification and Dicarboxylic Acid Production","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Hydrocarbon exploration and reservoir analysis","field":"Engineering","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biodegradation; Methanogenesis; Chemistry; Anoxic waters; Produced water; Methane; Environmental chemistry; Hydrocarbon; Energy source; Biochemistry; Biology; Food science; Organic chemistry; Fossil fuel; Waste management","score_opus":0.01005948152059901,"score_gpt":0.19562414809244003,"score_spread":0.185564666571841,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2762016299","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973729,0.0009770446,0.0008360566,0.00032040526,0.000103414684,0.00014059311,0.00002996237,0.000052905816,0.00016670002],"genre_scores_gemma":[0.99742246,0.0018373802,0.0002757299,0.000027194747,0.000047339698,0.000032179476,0.00028267357,0.000014854239,0.000060186674],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993813,0.000017321268,0.00015275976,0.0002769594,0.000028292914,0.00014335212],"domain_scores_gemma":[0.99959195,0.0000070005617,0.000057311296,0.0002873792,0.0000015952459,0.000054789693],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009300507,0.00013629522,0.00015650954,0.000055966007,0.00025340277,0.00003945522,0.000089429115,0.00009871637,0.000019626199],"category_scores_gemma":[0.00000464148,0.00012542943,0.000025053365,0.000024570449,0.00019613987,0.00008853349,0.00005226276,0.000080760554,0.000034998156],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000063705675,0.00001733461,0.00034512227,0.000009514046,0.000055444907,7.494047e-7,0.00006603403,0.0001822575,0.9934868,0.000050303093,0.000036169287,0.005743867],"study_design_scores_gemma":[0.00036242174,0.000018979963,0.0047358964,0.0000038979997,0.00007110365,0.000034605153,0.00013256849,0.0030832335,0.98915493,0.0000981546,0.0020593686,0.00024483775],"about_ca_topic_score_codex":0.000006365037,"about_ca_topic_score_gemma":0.00001078602,"teacher_disagreement_score":0.005499029,"about_ca_system_score_codex":0.00002283985,"about_ca_system_score_gemma":0.0000020982484,"threshold_uncertainty_score":0.5114864},"labels":[],"label_agreement":null},{"id":"W2765100240","doi":"10.1128/aem.01673-17","title":"Population-Wide Survey of Salmonella enterica Response to High-Pressure Processing Reveals a Diversity of Responses and Tolerance Mechanisms","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Inactivation Methods","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Canada","funders":"Health Canada; Government of Canada","keywords":"Salmonella enterica; Pascalization; Biology; Population; Regulon; Microbiology; Salmonella; Food science; Propidium iodide; Bacteria; High pressure; Biochemistry; Genetics; Medicine","score_opus":0.013099935040642658,"score_gpt":0.24876649406973902,"score_spread":0.23566655902909636,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2765100240","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976493,0.00014823952,0.0016120035,0.000050718354,0.0000274087,0.00017820392,0.00031969688,0.000002189425,0.00001221357],"genre_scores_gemma":[0.99444234,0.000055563945,0.005123952,0.0001301812,0.000007984757,0.000004259358,0.00011039868,0.000009324668,0.00011601809],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991857,0.00019220564,0.00018230318,0.0002948062,0.000027460519,0.00011756126],"domain_scores_gemma":[0.99939954,0.00006291131,0.00022465335,0.00026195575,0.000009785556,0.000041173505],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047715215,0.000113628164,0.0002298191,0.00003243083,0.00019818782,0.000008150845,0.00013020459,0.00012491962,0.0000098707205],"category_scores_gemma":[0.00011468828,0.00011384294,0.000017780629,0.00001716926,0.00021726114,0.0000048257307,0.00060588075,0.000041747,5.618472e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018802487,0.000029608838,0.05492167,0.000020983567,0.000021055524,3.5959624e-7,0.000076904704,0.000008420846,0.9423536,0.000012063392,0.000041249776,0.0006338231],"study_design_scores_gemma":[0.0002850746,0.00010724603,0.54733735,0.000008387864,0.000009890059,0.0000055808296,0.000026112688,9.4186714e-7,0.45190272,0.000049311566,0.00019049108,0.00007688929],"about_ca_topic_score_codex":0.00024629573,"about_ca_topic_score_gemma":0.000016070364,"teacher_disagreement_score":0.4924157,"about_ca_system_score_codex":0.000007462531,"about_ca_system_score_gemma":0.0000071156865,"threshold_uncertainty_score":0.46423805},"labels":[],"label_agreement":null},{"id":"W2765154940","doi":"10.1128/aem.01738-17","title":"Interactions of the Hindgut Mucosa-Associated Microbiome with Its Host Regulate Shedding of Escherichia coli O157:H7 by Cattle","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; University of Lethbridge; University of Alberta","funders":"Alberta Innovates; Alberta Innovates Bio Solutions; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Hindgut; Microbiome; Escherichia coli; Biology; Host (biology); Microbiology; Bacteria; Enterobacteriaceae; Genetics; Ecology; Gene; Midgut","score_opus":0.004352388201094103,"score_gpt":0.20279797182097345,"score_spread":0.19844558361987935,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2765154940","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99818987,0.00030389242,0.000011726152,0.00018223494,0.00009173088,0.00024809278,0.00056864705,0.0000033667325,0.00040043992],"genre_scores_gemma":[0.9983021,0.00021336859,0.00009780574,0.00017876539,0.00002005108,0.000009336633,0.00037429933,0.000020285383,0.00078400405],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991655,0.000035223442,0.00022875157,0.0003068394,0.000025681087,0.00023804742],"domain_scores_gemma":[0.9991741,0.000010287652,0.00037151432,0.00039070807,0.000008355604,0.000045026227],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008442612,0.0001727993,0.00024194198,0.000024567424,0.0002731924,0.000010919113,0.0002665457,0.00016879443,0.00003195484],"category_scores_gemma":[0.0000061386536,0.00012945569,0.000056386678,0.000029328403,0.0005815513,0.0000051680586,0.0002798275,0.00012083777,0.0000041690114],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000064216976,0.000120660115,0.0035324297,0.000019575109,0.000094426345,1.6938154e-7,0.00007636416,0.0000022067134,0.9946258,0.000026857118,0.0013596783,0.000077584016],"study_design_scores_gemma":[0.0008452499,0.00014537729,0.05154657,0.000023045039,0.000039031715,0.000021196203,0.00012735155,0.0000013185767,0.9354918,0.0000034121429,0.011602444,0.00015321551],"about_ca_topic_score_codex":0.00005516419,"about_ca_topic_score_gemma":0.000059750015,"teacher_disagreement_score":0.059134044,"about_ca_system_score_codex":0.000028194816,"about_ca_system_score_gemma":0.000026321273,"threshold_uncertainty_score":0.5279049},"labels":[],"label_agreement":null},{"id":"W2765638502","doi":"10.1128/aem.01492-17","title":"A Novel Steroid-Coenzyme A Ligase from Novosphingobium sp. Strain Chol11 Is Essential for an Alternative Degradation Pathway for Bile Salts","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Steroid Chemistry and Biochemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Deutsche Forschungsgemeinschaft","keywords":"Biochemistry; Comamonas testosteroni; Bacteria; Rhodococcus; Steroid; Coenzyme A; Biology; Strain (injury); Bile acid; Chemistry; Enzyme; Reductase","score_opus":0.012180983123205142,"score_gpt":0.2315437891846618,"score_spread":0.21936280606145667,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2765638502","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9854806,0.00013155537,0.005086835,0.00008950124,0.000121152836,0.000456475,0.008581141,0.0000085549345,0.000044151675],"genre_scores_gemma":[0.98593307,0.000053041626,0.002239436,0.00045036836,0.0005888563,0.00016197098,0.010355162,0.00003123856,0.0001868887],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987042,0.000006004257,0.00021374592,0.000737428,0.000033921657,0.00030470433],"domain_scores_gemma":[0.999195,0.000017957154,0.00021280212,0.00046611496,0.00000837107,0.00009976945],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000081305385,0.0002663835,0.00020838508,0.000010990706,0.00031325174,0.00006159877,0.00030631555,0.0003035338,0.000019757075],"category_scores_gemma":[0.000010882324,0.00026148674,0.000089684036,0.0000063678735,0.00024904084,0.000010730636,0.00018231351,0.00007831029,0.0000024347876],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003508725,0.00018110889,0.00018390718,0.000022226706,0.0000855901,4.715341e-7,0.0000844757,0.0000015594501,0.99691725,0.000009892582,0.0004445217,0.0017181424],"study_design_scores_gemma":[0.0027423745,0.00027245315,0.0004753485,0.000008001899,0.000034862063,0.000021698645,0.0001879319,0.000046644236,0.9873627,0.00011553417,0.008419085,0.00031336353],"about_ca_topic_score_codex":0.000038520557,"about_ca_topic_score_gemma":0.000018308418,"teacher_disagreement_score":0.009554529,"about_ca_system_score_codex":0.000020418638,"about_ca_system_score_gemma":0.000018408451,"threshold_uncertainty_score":0.9999837},"labels":[],"label_agreement":null},{"id":"W2769548074","doi":"10.1128/aem.02164-17","title":"High Prevalence and Genetic Diversity of Large phiCD211 (phiCDIF1296T)-Like Prophages in Clostridioides difficile","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Agence Nationale de la Recherche; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Prophage; Biology; Genetics; Genome; Transposase; Gene; Mobile genetic elements; Lysogenic cycle; Comparative genomics; Locus (genetics); Bacteriophage; Genomics; Transposable element; Escherichia coli","score_opus":0.010727647049884636,"score_gpt":0.23177966396430535,"score_spread":0.22105201691442072,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2769548074","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99759686,0.0013626216,0.0000029986272,0.00019873091,0.0000422662,0.00045711477,0.00022034568,0.000009422753,0.00010966587],"genre_scores_gemma":[0.9955918,0.004003622,0.00008059825,0.00005642728,0.000041403255,0.000014891343,0.000052892166,0.000013456952,0.00014488015],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988649,0.00002113136,0.00023441487,0.00043663083,0.00008534146,0.00035758497],"domain_scores_gemma":[0.99936,0.00004508021,0.000111512716,0.0003745701,0.0000051405927,0.00010364309],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011269003,0.00018843511,0.0003875335,0.0000811013,0.00030442126,0.000013172878,0.00016962131,0.00017097549,0.00011182765],"category_scores_gemma":[0.000015487723,0.00016748646,0.000039972347,0.000028402575,0.00074606074,0.00003367602,0.0010096192,0.00022835966,0.000011326929],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001949592,0.000279891,0.22014946,0.00018755726,0.00003220756,0.000041981973,0.000114908165,0.0000016624749,0.7775562,0.000055891385,0.00004132255,0.0013439823],"study_design_scores_gemma":[0.0030394404,0.0003559186,0.74827814,0.000054979664,0.00007114192,0.00010438921,0.00018846408,0.000020804326,0.24737458,0.000055153934,0.0002708864,0.00018608307],"about_ca_topic_score_codex":0.00014555949,"about_ca_topic_score_gemma":0.00002311398,"teacher_disagreement_score":0.5301816,"about_ca_system_score_codex":0.000056181572,"about_ca_system_score_gemma":0.000018156587,"threshold_uncertainty_score":0.68298995},"labels":[],"label_agreement":null},{"id":"W2770083475","doi":"10.1128/aem.02061-17","title":"Limited Effects of Variable-Retention Harvesting on Fungal Communities Decomposing Fine Roots in Coastal Temperate Rainforests","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Decomposer; Biology; Temperate rainforest; Litter; Ecology; Botany; Postharvest; Chronosequence; Guild; Ecological succession; Ecosystem","score_opus":0.008552383239729755,"score_gpt":0.18269477146302965,"score_spread":0.1741423882232999,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2770083475","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981895,0.00004618075,0.000002445384,0.000037782134,0.00009765375,0.00015114892,0.000451695,0.0000068885124,0.0010166756],"genre_scores_gemma":[0.99797446,0.00011226491,0.000073434196,0.00006200157,0.000026646452,0.000008666332,0.0016845478,0.0000010165126,0.00005694036],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99948525,0.000043868215,0.00015882397,0.00012713125,0.000023003327,0.0001619346],"domain_scores_gemma":[0.99918395,0.0006105812,0.00011188645,0.00006129169,0.000001812324,0.000030452169],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000084768486,0.000111611305,0.00015917858,0.000015913734,0.00030769105,0.000032788757,0.00011918084,0.000086071945,0.00017003372],"category_scores_gemma":[0.000014527404,0.000055949637,0.000024349498,0.000019756855,0.00005891178,0.00006201517,0.00010756574,0.00013352548,0.00002050111],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000063788306,0.000059251754,0.10584628,0.000009558604,0.000008253429,0.0000020472282,0.000046991772,0.00002280501,0.8880664,0.0002292169,0.000022536093,0.005622885],"study_design_scores_gemma":[0.00059982267,0.00061595556,0.8765013,0.00027579727,0.000024613313,0.00011089419,0.00048255737,0.00023868438,0.11777923,0.00024573953,0.002787072,0.00033833363],"about_ca_topic_score_codex":0.0010685588,"about_ca_topic_score_gemma":0.00078049867,"teacher_disagreement_score":0.77065504,"about_ca_system_score_codex":0.000010935392,"about_ca_system_score_gemma":0.0000014357628,"threshold_uncertainty_score":0.23665419},"labels":[],"label_agreement":null},{"id":"W2770524472","doi":"10.1128/aem.02082-17","title":"The Tape Measure Protein Is Involved in the Heat Stability of Lactococcus lactis Phages","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Lactococcus lactis; Bacteriophage; Lactococcus; Biology; Virulence; Mutant; Microbiology; Plasmid; Gene; Fermentation; Bacteria; Genetics; Food science; Escherichia coli","score_opus":0.011671086998180416,"score_gpt":0.21235615760199947,"score_spread":0.20068507060381904,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2770524472","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960202,0.00008965401,0.000004405966,0.00103895,0.000060130707,0.00060507504,0.00007633087,0.000004762685,0.0021004744],"genre_scores_gemma":[0.99936074,0.00010007055,0.000040122464,0.0002923576,0.00001700652,0.00007730901,0.000014747884,0.0000082468205,0.00008941568],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991362,0.00007275079,0.00021048707,0.00028550602,0.00004722834,0.00024784365],"domain_scores_gemma":[0.9992899,0.000062728905,0.00011196059,0.00050376874,9.0937533e-7,0.000030762247],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002877217,0.0001493643,0.00016009154,0.000008672738,0.00054032856,0.000048205096,0.0004271679,0.00009417664,0.0006490006],"category_scores_gemma":[0.00000781852,0.00008886433,0.00004871082,0.00002245386,0.0011915604,0.000094857845,0.00031020874,0.00020722748,0.00007041572],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004036462,0.000092290386,0.010057898,0.0000037597863,0.0000103443435,9.708475e-7,0.0005470787,5.280253e-7,0.98551404,0.000022457489,0.00025902892,0.003451212],"study_design_scores_gemma":[0.0007422292,0.00010564313,0.43979785,0.000011518302,0.000020245703,0.000018393648,0.0018807676,0.0000054048937,0.5143054,0.00019813621,0.042692896,0.000221528],"about_ca_topic_score_codex":0.0006326781,"about_ca_topic_score_gemma":0.0008000151,"teacher_disagreement_score":0.47120866,"about_ca_system_score_codex":0.00006466264,"about_ca_system_score_gemma":0.0000036924068,"threshold_uncertainty_score":0.7106101},"labels":[],"label_agreement":null},{"id":"W2770634371","doi":"10.1128/aem.01517-17","title":"Dynamics of Heterotrophic Bacterial Assemblages within Synechococcus Cultures","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Fisheries and Oceans Canada; University of British Columbia; Canadian Institute for Advanced Research; Memorial University of Newfoundland","funders":"National Natural Science Foundation of China","keywords":"Gammaproteobacteria; Biology; Synechococcus; Actinobacteria; Cytophaga; Alphaproteobacteria; Heterotroph; Bacteria; Cyanobacteria; Roseobacter; Population; Microbial population biology; Microbiology; Ecology; Botany; Flavobacterium; Pseudomonas; 16S ribosomal RNA; Phylogenetics; Biochemistry; Clade","score_opus":0.005587424350694043,"score_gpt":0.20542166804602982,"score_spread":0.19983424369533578,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2770634371","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99697685,0.000018115312,0.000014855474,0.00015220568,0.00016384917,0.00018907222,0.00009826876,0.000012090447,0.0023746716],"genre_scores_gemma":[0.9990293,0.000080740254,0.00023337676,0.00015281065,0.000028994738,0.000012525924,0.0003260184,0.000012376199,0.00012387353],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99910134,0.000076581884,0.0002324751,0.000309633,0.000026193979,0.00025376826],"domain_scores_gemma":[0.99915946,0.000038148184,0.00025633373,0.00048914243,7.9735884e-7,0.00005614013],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00012708259,0.00019230392,0.00029831778,0.000017481649,0.0005028771,0.000016996746,0.0004756702,0.00025038002,0.0017666538],"category_scores_gemma":[0.0000081000935,0.00016921165,0.000047757294,0.000012486237,0.0017035347,0.00007398634,0.0008612753,0.00021986151,0.00012861913],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007112606,0.000086565946,0.010660252,0.000006582154,0.000026110467,0.0000019295637,0.00017026417,0.00004198875,0.98755854,0.0004709275,0.00026186052,0.00064384885],"study_design_scores_gemma":[0.0037686366,0.0010563496,0.5665268,0.000028431366,0.00014811869,0.00026691475,0.00070063927,0.00017527568,0.40426573,0.010690593,0.010941962,0.0014305849],"about_ca_topic_score_codex":0.00016600883,"about_ca_topic_score_gemma":0.00057920563,"teacher_disagreement_score":0.58329284,"about_ca_system_score_codex":0.00005956897,"about_ca_system_score_gemma":0.0000034385791,"threshold_uncertainty_score":0.99914587},"labels":[],"label_agreement":null},{"id":"W2772663479","doi":"10.1128/aem.02098-17","title":"The Emergency Medical Service Microbiome","year":2017,"lang":"en","type":"review","venue":"Applied and Environmental Microbiology","topic":"Infection Control in Healthcare","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Lethbridge","funders":"Alberta Innovates; Alberta Innovates - Technology Futures","keywords":"Microbiome; Biosafety; Transmission (telecommunications); Vancomycin-resistant Enterococcus; Health care; Medicine; Biology; Biotechnology; Bioinformatics; Staphylococcus aureus; Vancomycin","score_opus":0.0459036362054304,"score_gpt":0.3448210889150988,"score_spread":0.29891745270966835,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2772663479","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0001254908,0.99598294,0.0000023204993,0.00079451303,0.0007699108,0.0010353406,0.000121833946,0.000029818608,0.0011378467],"genre_scores_gemma":[0.00041337736,0.9964775,0.000013925708,0.000643742,0.00044181396,0.00018286306,0.0009885004,0.000052885924,0.0007853816],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982527,0.00009341664,0.0006237668,0.00051505084,0.00007178605,0.0004432919],"domain_scores_gemma":[0.9986829,0.00012971787,0.00034397544,0.00063528947,0.000006901913,0.00020122364],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00032253482,0.00040210722,0.0012155562,0.00005987988,0.00059444655,0.000015059811,0.0002991134,0.0008775424,0.0006120205],"category_scores_gemma":[0.00002368818,0.00024706122,0.00021948144,0.00004225441,0.00040346052,0.000012796321,0.0003169021,0.0007242948,0.0006863997],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015877511,0.00004693136,0.0000256222,0.003188055,0.00025045717,0.00001709363,0.000024143279,4.9537277e-9,0.00077930745,0.00009079296,0.0014341649,0.9941276],"study_design_scores_gemma":[0.00041009748,0.00005241058,0.000037394326,0.0005995581,0.00037970356,0.0021015685,0.000026911352,4.710747e-7,0.0000043197338,0.000013910691,0.9961588,0.00021489963],"about_ca_topic_score_codex":0.000029961593,"about_ca_topic_score_gemma":0.000027338798,"teacher_disagreement_score":0.9947246,"about_ca_system_score_codex":0.00013749064,"about_ca_system_score_gemma":0.00013163083,"threshold_uncertainty_score":0.99999815},"labels":[],"label_agreement":null},{"id":"W2775768450","doi":"10.1128/aem.02274-17","title":"Condensed Tannins Affect Bacterial and Fungal Microbiomes and Mycotoxin Production during Ensiling and upon Aerobic Exposure","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Tannin, Tannase and Anticancer Activities","field":"Immunology and Microbiology","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Agriculture and Agri-Food Canada","funders":"Alberta Livestock and Meat Agency","keywords":"Mycotoxin; Microbiome; Biology; Trichothecene; Microbiology; Bacteria; Food science; Fungal growth","score_opus":0.006004062574791908,"score_gpt":0.19207750944698165,"score_spread":0.18607344687218974,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2775768450","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99445814,0.0044306046,0.0000017491175,0.00016093992,0.00037963863,0.00034688567,0.00012493938,0.00003480611,0.00006228575],"genre_scores_gemma":[0.9977733,0.0014108341,0.000056003628,0.000056825167,0.00009553918,0.000022695353,0.00014241034,0.00002485891,0.00041754398],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99863964,0.00006945396,0.0002127858,0.00066185294,0.000012869208,0.0004034135],"domain_scores_gemma":[0.9994891,0.000052349635,0.00016001999,0.0002498804,0.0000032635837,0.000045346045],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00012085863,0.0003188804,0.00041908136,0.00007124476,0.0008938719,0.000071475755,0.0000864143,0.0003148114,0.00006728797],"category_scores_gemma":[0.000009924738,0.00029343666,0.000030409788,0.000013417081,0.0015362173,0.00014612745,0.00030199514,0.00024143736,0.000013270833],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003117353,0.00004340309,0.011666559,0.0000538504,0.00012338482,0.000008675262,0.00047920953,2.162474e-7,0.98522466,0.00005049017,0.000077001634,0.0019608012],"study_design_scores_gemma":[0.0023236766,0.00017788574,0.15943713,0.000040060502,0.00007645317,0.0014884268,0.0007221327,3.557902e-7,0.83283526,0.00003370919,0.002502618,0.00036226204],"about_ca_topic_score_codex":0.000026874082,"about_ca_topic_score_gemma":0.000022388205,"teacher_disagreement_score":0.15238939,"about_ca_system_score_codex":0.000024460873,"about_ca_system_score_gemma":0.000008879679,"threshold_uncertainty_score":0.9999518},"labels":[],"label_agreement":null},{"id":"W2776001136","doi":"10.1128/aem.02068-17","title":"Environmental Stress-Induced Bacterial Lysis and Extracellular DNA Release Contribute to Campylobacter jejuni Biofilm Formation","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; China Scholarship Council","keywords":"Biofilm; Campylobacter jejuni; Lysis; Microbiology; Extracellular; Bacteria; DNA; Environmental stress; Chemistry; Biology; Campylobacter; Cell biology; Genetics; Biochemistry; Ecology","score_opus":0.004905567931521938,"score_gpt":0.18199617720688638,"score_spread":0.17709060927536444,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2776001136","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99828476,0.00015478037,0.000028464607,0.00021352095,0.00017027862,0.00031595322,0.000743448,0.000008130278,0.00008065968],"genre_scores_gemma":[0.99675,0.00034614655,0.00027975562,0.00024267132,0.00022698945,0.000013936773,0.002023844,0.00002470449,0.000091944814],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99879813,0.000036174864,0.00024073664,0.0005213338,0.00003781063,0.00036583774],"domain_scores_gemma":[0.9992455,0.0000073480533,0.00015813662,0.00041568297,0.0000020842983,0.00017120448],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00009143063,0.00027214276,0.0002495649,0.000033334043,0.0004242737,0.00009193501,0.00014567218,0.00029103635,0.00007806586],"category_scores_gemma":[0.0000073176957,0.0002605217,0.000052390955,0.00000886594,0.0002540708,0.000017537943,0.00041373022,0.000089051646,0.00003505645],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019579104,0.00006471553,0.0012474302,0.0000072437188,0.00004631952,0.0000040940304,0.000053890406,4.8087054e-7,0.9915191,0.000023772385,0.000082899875,0.0067542694],"study_design_scores_gemma":[0.0011760449,0.00025923783,0.018067634,0.000007890991,0.000043527274,0.00007731846,0.00015424516,0.0000040549876,0.9570779,0.0000071561885,0.022775892,0.0003490894],"about_ca_topic_score_codex":0.00002284872,"about_ca_topic_score_gemma":0.000023307639,"teacher_disagreement_score":0.034441184,"about_ca_system_score_codex":0.000028860284,"about_ca_system_score_gemma":0.0000074014947,"threshold_uncertainty_score":0.9999847},"labels":[],"label_agreement":null},{"id":"W2779053224","doi":"10.1128/aem.02200-17","title":"Promising Prebiotic Candidate Established by Evaluation of Lactitol, Lactulose, Raffinose, and Oligofructose for Maintenance of a Lactobacillus-Dominated Vaginal Microbiota","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Lawson Health Research Institute; Western University","funders":"Canadian Institutes of Health Research; Government of Canada; Kimberly-Clark","keywords":"Lactobacillus crispatus; Lactobacillus; Biology; Bacterial vaginosis; Prebiotic; Microbiology; Lactobacillus fermentum; Lactobacillus gasseri; Population; Dysbiosis; Lactulose; Probiotic; Food science; Gut flora; Bacteria; Medicine; Immunology; Fermentation; Lactobacillus plantarum; Lactic acid","score_opus":0.011832329413357089,"score_gpt":0.258331155707079,"score_spread":0.24649882629372188,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2779053224","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961853,0.001304112,0.000057213834,0.000108973836,0.00014760057,0.0011978106,0.0006902384,0.000010540499,0.00029823132],"genre_scores_gemma":[0.9987136,0.0002635632,0.00017593503,0.00001538023,0.000012882461,0.000060259066,0.0005154427,0.000021047374,0.00022185026],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985383,0.000137872,0.00036183998,0.0005562344,0.00003443232,0.00037131217],"domain_scores_gemma":[0.9988937,0.00013840361,0.00041393304,0.00047295095,0.000050688494,0.000030346982],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007245451,0.0002302568,0.00045365543,0.000105719315,0.00033115366,0.000025538915,0.00021427251,0.0002638306,0.00009372567],"category_scores_gemma":[0.00012380292,0.0002067881,0.000050309314,0.000036331836,0.0016758585,0.00014384947,0.00020615454,0.0002081469,0.000008174979],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004811725,0.00023394429,0.00485124,0.00007725628,0.00020693184,2.5726337e-7,0.00019578608,0.0000033519755,0.9855828,0.00008852407,0.00049790007,0.007780835],"study_design_scores_gemma":[0.0049187527,0.00027775244,0.039527908,0.000032657437,0.00016327614,0.00012134239,0.00026218922,0.0000124513745,0.9515426,0.0001574741,0.0027627812,0.0002207836],"about_ca_topic_score_codex":0.00020878042,"about_ca_topic_score_gemma":0.000024158307,"teacher_disagreement_score":0.034676667,"about_ca_system_score_codex":0.00008633574,"about_ca_system_score_gemma":0.000050297538,"threshold_uncertainty_score":0.8432574},"labels":[],"label_agreement":null},{"id":"W2784010067","doi":"10.1128/aem.02475-17","title":"Targeted Synthesis and Characterization of a Gene Cluster Encoding NAD(P)H-Dependent 3α-, 3β-, and 12α-Hydroxysteroid Dehydrogenases from Eggerthella CAG:298, a Gut Metagenomic Sequence","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Drug Transport and Resistance Mechanisms","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Hatch; University of Illinois at Urbana-Champaign","keywords":"Hydroxysteroid Dehydrogenases; Biology; Escherichia coli; Bile acid; Gene; Biochemistry; Hydroxysteroid; Metagenomics; Reductase; Enzyme; Farnesoid X receptor; Dehydrogenase; Transcription factor; Nuclear receptor","score_opus":0.0072213495043067805,"score_gpt":0.18460337599315765,"score_spread":0.17738202648885087,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2784010067","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99805295,0.0006530929,0.0002588185,0.00006162724,0.000058732898,0.00036691545,0.00046056937,0.000015643793,0.0000716609],"genre_scores_gemma":[0.9975296,0.0008922236,0.0006825182,0.00026926756,0.00006654516,0.000025841524,0.00043013692,0.000024697136,0.000079128324],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989739,0.0000303234,0.00028476169,0.00043589307,0.000048357993,0.0002267804],"domain_scores_gemma":[0.9995811,0.00003923561,0.00012103512,0.00015983402,0.0000037329573,0.000095054835],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000929627,0.00021547834,0.00041615937,0.0000636718,0.00010191197,0.000008598286,0.000053096366,0.00015157228,0.00010308481],"category_scores_gemma":[0.000001942697,0.00017934373,0.000034574918,0.000027701175,0.00044265715,0.000034957855,0.000055329605,0.00007549589,0.000010585622],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020929718,0.00004946914,0.0032856185,0.000044084067,0.00011919423,0.000010023297,0.0006007304,3.472223e-7,0.99444294,0.000011868486,0.0000014776456,0.001224929],"study_design_scores_gemma":[0.000958408,0.00012321556,0.012191249,0.000042530755,0.00021840111,0.0001304513,0.00027059898,0.000047059933,0.9853819,0.000032407297,0.00041448153,0.00018926893],"about_ca_topic_score_codex":0.00005311794,"about_ca_topic_score_gemma":0.00003501433,"teacher_disagreement_score":0.009061034,"about_ca_system_score_codex":0.000033204826,"about_ca_system_score_gemma":0.000010255149,"threshold_uncertainty_score":0.7313425},"labels":[],"label_agreement":null},{"id":"W2786459046","doi":"10.1128/aem.02299-17","title":"Evolution and Diversity of Inherited Spiroplasma Symbionts in Myrmica Ants","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect and Arachnid Ecology and Behavior","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Spiroplasma; Biology; Host (biology); Symbiosis; Mutualism (biology); Ecology; Insect; Evolutionary biology; Zoology; Genetics; Bacteria; Mollicutes","score_opus":0.005757389363023523,"score_gpt":0.18872077027271547,"score_spread":0.18296338090969194,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2786459046","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99955153,0.00014135978,0.000006263853,0.000017706283,0.00004148503,0.0000918436,0.00003956365,0.0000016025917,0.000108615015],"genre_scores_gemma":[0.9995745,0.00017441314,0.00005643023,0.000042138217,0.000016541768,0.0000037236575,0.00007806821,0.0000037331663,0.000050440576],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99957114,0.0000124582275,0.00008837619,0.00019457733,0.000010612224,0.00012283813],"domain_scores_gemma":[0.99978477,0.0000027729825,0.0000634646,0.00012485593,0.0000011841528,0.000022963775],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000051244497,0.000080607286,0.000110911,0.000020177684,0.00021008689,0.0000034132242,0.000078874815,0.00016973463,0.000012709253],"category_scores_gemma":[0.0000022333231,0.000078353645,0.000015322583,0.0000056079325,0.0004002862,0.000003396457,0.00040503536,0.0000534776,0.0000026569717],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000050014707,0.000044420354,0.34084556,0.0000033993865,0.0000051343736,0.0000011808287,0.00002365148,2.2378299e-7,0.6583666,0.000023655999,0.000012538214,0.0006236088],"study_design_scores_gemma":[0.00076448306,0.00011621493,0.819589,0.0000030437911,0.000009960634,0.000025435407,0.00007616442,0.0000024043034,0.17907085,0.000050753697,0.00019785477,0.000093808],"about_ca_topic_score_codex":0.000033927576,"about_ca_topic_score_gemma":0.000055909917,"teacher_disagreement_score":0.47929576,"about_ca_system_score_codex":0.000007695971,"about_ca_system_score_gemma":0.0000032370172,"threshold_uncertainty_score":0.3195169},"labels":[],"label_agreement":null},{"id":"W2788060026","doi":"10.1128/aem.02713-17","title":"Subtype-Specific Selection for Resistance to Fluoroquinolones but Not to Tetracyclines Is Evident in Campylobacter jejuni Isolates from Beef Cattle in Confined Feeding Operations in Southern Alberta, Canada","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; University of Lethbridge; Agriculture and Agri-Food Canada","funders":"Beef Cattle Research Council; Alberta Livestock and Meat Agency; Alberta Beef Producers","keywords":"Nalidixic acid; Campylobacter; Biology; Tetracycline; Campylobacter jejuni; Ciprofloxacin; Beef cattle; Microbiology; Campylobacteriosis; Antibiotic resistance; Veterinary medicine; Population; Bacteria; Antibiotics; Animal science; Medicine; Genetics; Environmental health","score_opus":0.01256607421263576,"score_gpt":0.20391809784182335,"score_spread":0.1913520236291876,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2788060026","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966035,0.00009248671,0.000004924189,0.002371967,0.00010871648,0.00043612087,0.00034489128,0.000005867421,0.000031557167],"genre_scores_gemma":[0.9969385,0.000043036154,0.00016830454,0.0020499933,0.00014155175,0.00007991535,0.00026192027,0.0000027364583,0.00031403376],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99874866,0.00004636025,0.00033211286,0.0004933262,0.000024482735,0.00035505116],"domain_scores_gemma":[0.9995552,0.0002784898,0.000039871633,0.00005251609,0.0000059631425,0.00006798368],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011156127,0.00016842141,0.00027708107,0.000033343582,0.0000915645,0.000015425067,0.00013041406,0.00014654105,0.00021098524],"category_scores_gemma":[0.000016900021,0.000097574695,0.000021461048,0.00013074416,0.00007451355,0.000027964361,0.000064621454,0.000089925525,0.000035925073],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020632759,0.000041099727,0.0943668,0.000001445575,0.0000047714843,3.5823209e-7,0.0006851081,0.000014209084,0.90319514,0.000018288514,0.00033970707,0.0011267556],"study_design_scores_gemma":[0.0005674437,0.00023077724,0.88979053,0.000029308241,0.0000059589875,0.000004807499,0.0032259214,0.000025013702,0.08298728,0.00010308693,0.022642272,0.0003875734],"about_ca_topic_score_codex":0.37309986,"about_ca_topic_score_gemma":0.9633688,"teacher_disagreement_score":0.82020783,"about_ca_system_score_codex":0.00014002176,"about_ca_system_score_gemma":0.000009624341,"threshold_uncertainty_score":0.6310747},"labels":[],"label_agreement":null},{"id":"W2789904388","doi":"10.1128/aem.02820-17","title":"Microbiota-Mediated Modulation of Organophosphate Insecticide Toxicity by Species-Dependent Interactions with Lactobacilli in a Drosophila melanogaster Insect Model","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect and Pesticide Research","field":"Agricultural and Biological Sciences","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St Joseph's Health Care; Agriculture and Agri-Food Canada; Lawson Health Research Institute; Western University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Lactobacillus plantarum; Drosophila melanogaster; Probiotic; Lactobacillus rhamnosus; Melanogaster; Organophosphate; Microbiology; Metabolite; Gut flora; Bacteria; Food science; Biochemistry; Pesticide; Lactic acid; Genetics; Ecology","score_opus":0.012995571124295049,"score_gpt":0.189918769498,"score_spread":0.17692319837370493,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2789904388","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99874,0.000040315583,0.000018441733,0.00010898485,0.000026004245,0.00023348139,0.00036029652,0.000011449813,0.00046101585],"genre_scores_gemma":[0.9990592,0.00005842412,0.00005584297,0.00020938962,0.00003850326,0.000012005387,0.00044102344,0.000002589649,0.00012304485],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990905,0.000043197553,0.00021930684,0.0003096915,0.00005677709,0.00028052888],"domain_scores_gemma":[0.9996878,0.00008928813,0.000103173144,0.00005547864,0.000008457554,0.00005583099],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010009932,0.00016120174,0.00021284516,0.000028007162,0.00009934854,0.000013418108,0.00010691374,0.00011622933,0.00059200416],"category_scores_gemma":[0.0000044837807,0.000075816766,0.000023414137,0.00012383105,0.00035402412,0.00005582498,0.00009464699,0.0001597033,0.000031527703],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001888283,0.00014014119,0.017120883,0.0000039027477,0.000015170821,0.0000015530045,0.00014514486,0.000023051853,0.9817358,0.00001964713,0.00005493518,0.0005508888],"study_design_scores_gemma":[0.00085445395,0.00065042987,0.23540162,0.00001848367,0.000014242717,0.000053023527,0.00030002958,0.00052297226,0.76086074,0.00019270388,0.0008146747,0.00031659857],"about_ca_topic_score_codex":0.00016872064,"about_ca_topic_score_gemma":0.0010330661,"teacher_disagreement_score":0.22087508,"about_ca_system_score_codex":0.00006442216,"about_ca_system_score_gemma":0.000005418527,"threshold_uncertainty_score":0.6482031},"labels":[],"label_agreement":null},{"id":"W2790171019","doi":"10.1128/aem.00109-18","title":"Long-Term Exposure of Agricultural Soil to Veterinary Antibiotics Changes the Population Structure of Symbiotic Nitrogen-Fixing Rhizobacteria Occupying Nodules of Soybeans (Glycine max)","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Western University","funders":"Agriculture and Agri-Food Canada; Government of Canada","keywords":"Biology; Bradyrhizobium; Antibiotics; Nitrogen fixation; Population; Agronomy; Veterinary medicine; Root nodule; 16S ribosomal RNA; Animal science; Bacteria; Microbiology","score_opus":0.007919570142688985,"score_gpt":0.18766865877071473,"score_spread":0.17974908862802574,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2790171019","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990256,0.00011599023,6.087452e-7,0.000097206415,0.000086792934,0.00025211502,0.00040160996,0.00001058759,0.000009491702],"genre_scores_gemma":[0.99924594,0.000018738065,0.00012787055,0.00007255403,0.00011681204,8.605566e-7,0.000410092,0.000002727332,0.00000437924],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990956,0.000050415816,0.0002918042,0.00027210277,0.000060600574,0.00022946349],"domain_scores_gemma":[0.9995679,0.000056984165,0.00022859593,0.00009318761,0.000011369904,0.000041950017],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000066911925,0.00018847789,0.0003093763,0.000018812105,0.00011826724,0.0000076221854,0.00020369203,0.00014911949,0.00009096857],"category_scores_gemma":[0.0000042740007,0.00007638431,0.00005594724,0.00010777784,0.0003196355,0.000029845618,0.00020442977,0.00007300831,0.0000031733503],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005003983,0.00003916565,0.18867636,0.00002577781,0.00003810039,2.7513462e-7,0.00018544348,4.0229827e-7,0.8097578,0.000017945846,0.0000047102358,0.001203946],"study_design_scores_gemma":[0.00009915964,0.00038472327,0.4780738,0.000019262874,0.000024711188,0.00002472843,0.00022953094,1.3503832e-7,0.5210465,0.000014497281,0.0000035650191,0.000079362595],"about_ca_topic_score_codex":0.000075280805,"about_ca_topic_score_gemma":0.00013677122,"teacher_disagreement_score":0.28939745,"about_ca_system_score_codex":0.000020089461,"about_ca_system_score_gemma":0.0000015106409,"threshold_uncertainty_score":0.31148618},"labels":[],"label_agreement":null},{"id":"W2790626709","doi":"10.1128/aem.02830-17","title":"Targeting Bacteria and Methanogens To Understand the Role of Residual Slurry as an Inoculant in Stored Liquid Dairy Manure","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Anaerobic Digestion and Biogas Production","field":"Engineering","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Wilfrid Laurier University; University of Guelph","funders":"","keywords":"Slurry; Manure; Methanogen; Methane; Anaerobic digestion; Methanosarcina; Environmental science; Pulp and paper industry; Biology; Bacteria; Food science; Biogas; Agronomy; Chemistry; Environmental engineering; Ecology","score_opus":0.00403115387352182,"score_gpt":0.17682078387578645,"score_spread":0.17278963000226463,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2790626709","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992244,0.00024454074,0.00003125689,0.00006502571,0.00006342182,0.00012924627,0.000022150018,0.000015649859,0.00020430084],"genre_scores_gemma":[0.9993105,0.00013523782,0.00030981118,0.00008661858,0.00006246071,0.0000037386526,0.0000701307,0.000009715874,0.000011785704],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99954385,0.000021341199,0.000117166666,0.00016918726,0.000017504139,0.00013094617],"domain_scores_gemma":[0.99985266,0.000008526266,0.000018413813,0.000084425905,0.0000011955685,0.000034755678],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009898499,0.00009241967,0.00010424739,0.000036102672,0.000051877523,0.000005229928,0.000046629237,0.00007503054,0.00004392318],"category_scores_gemma":[0.0000014240139,0.00007265318,0.000007176552,0.000029676945,0.00019290633,0.000027022714,0.000052218904,0.00006220145,0.000008508101],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006849563,0.000013303541,0.0002746312,0.000002588665,0.000012102647,3.5879978e-7,0.001444946,0.00004032678,0.9965132,0.0007509567,0.000050600676,0.0008284973],"study_design_scores_gemma":[0.00066308636,0.00062414346,0.014021437,0.000013763704,0.00002690028,0.00006291615,0.018564787,0.000054728473,0.93891186,0.0004764852,0.02624769,0.00033221557],"about_ca_topic_score_codex":0.000020752768,"about_ca_topic_score_gemma":0.000019785159,"teacher_disagreement_score":0.057601344,"about_ca_system_score_codex":0.000026716196,"about_ca_system_score_gemma":0.0000024641686,"threshold_uncertainty_score":0.29627106},"labels":[],"label_agreement":null},{"id":"W2791717740","doi":"10.1128/aem.02601-17","title":"Assessing Performance of Spore Samplers in Monitoring Aeromycobiota and Fungal Plant Pathogen Diversity in Canada","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Indoor Air Quality and Microbial Exposure","field":"Environmental Science","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Government of Canada","keywords":"Drechslera; Alternaria; Spore; Biology; Cladosporium; Internal transcribed spacer; Basidiomycota; Bioaerosol; Pyrenophora; Fusarium; Ascomycota; Botany; Environmental science; Penicillium; Aerosol; Geography; Ribosomal RNA","score_opus":0.012029386128505003,"score_gpt":0.1841587644829144,"score_spread":0.1721293783544094,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2791717740","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.999429,0.000037472153,0.0000013954526,0.000013083059,0.000088222325,0.0001138763,0.00008816203,0.000002502748,0.00022632505],"genre_scores_gemma":[0.99961627,0.00008001417,0.0001633146,0.00006965169,0.00001667748,0.0000020017653,0.000039126844,0.0000052259866,0.000007743536],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992125,0.000029354745,0.0001895219,0.00027076833,0.000041490926,0.0002563699],"domain_scores_gemma":[0.9997862,0.000025354575,0.00006115826,0.000085061394,4.320658e-7,0.00004177015],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014867482,0.00012063344,0.0001801976,0.00002512805,0.00011720545,0.000004919377,0.00009480246,0.00007913952,0.000093733266],"category_scores_gemma":[0.0000012352572,0.00012064455,0.000009561581,0.000050003648,0.0003911183,0.00007990303,0.00046273106,0.00012219984,0.000004903426],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002315046,0.000015869702,0.5356642,0.0000064928254,0.0000021054873,0.0000036449908,0.00039746863,0.000014009374,0.46215186,0.000002835913,0.000010767338,0.0017075918],"study_design_scores_gemma":[0.0005144505,0.000053681208,0.9533034,0.000017588276,0.0000046670025,0.00003549083,0.0014388971,0.00002154702,0.044023,0.000008438334,0.0004237564,0.00015507323],"about_ca_topic_score_codex":0.19088227,"about_ca_topic_score_gemma":0.17756136,"teacher_disagreement_score":0.41812885,"about_ca_system_score_codex":0.00029242464,"about_ca_system_score_gemma":0.000016999567,"threshold_uncertainty_score":0.837446},"labels":[],"label_agreement":null},{"id":"W2792174858","doi":"10.1128/aem.02762-17","title":"Pseudomonas aeruginosa Biofilm Antibiotic Resistance Gene<i>ndvB</i>Expression Requires the RpoS Stationary-Phase Sigma Factor","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Canada; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"rpoS; Sigma factor; Pseudomonas aeruginosa; Microbiology; Biofilm; Biology; Antibiotic resistance; Antibiotics; Pseudomonadales; Gene; Gene expression; Genetics; Bacteria; Promoter","score_opus":0.006160120648619322,"score_gpt":0.2102568114321108,"score_spread":0.2040966907834915,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2792174858","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99795264,0.00050897046,0.000111114496,0.00020276353,0.00020522112,0.00025952785,0.00038700717,0.000013572069,0.00035919467],"genre_scores_gemma":[0.9961492,0.0003257807,0.00111549,0.0007815833,0.00035234526,0.000005906013,0.00096556364,0.000024820129,0.00027934747],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99881476,0.000060778388,0.00022973018,0.0005143959,0.000043140302,0.00033721296],"domain_scores_gemma":[0.9994577,0.000020533183,0.00011702502,0.00032710982,0.0000063685666,0.00007123023],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007865211,0.00023435045,0.0001719213,0.000023322062,0.00032810445,0.000026688938,0.00015202528,0.00021645536,0.000069354166],"category_scores_gemma":[0.0000053588865,0.00017143716,0.000049912815,0.00002710102,0.0007790704,0.000005907231,0.00020557443,0.00009054552,0.000034971683],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002120048,0.000071227296,0.00032073312,0.000006278257,0.000029920675,0.0000022332767,0.00007360887,4.716552e-7,0.99644464,0.00008293473,0.0011468478,0.0016091076],"study_design_scores_gemma":[0.0008098273,0.00023203409,0.0014734904,0.000007723607,0.000014251384,0.000041712647,0.00009518587,0.0000020250793,0.9239231,0.000018823363,0.07315705,0.00022480577],"about_ca_topic_score_codex":0.000007691479,"about_ca_topic_score_gemma":0.000013501819,"teacher_disagreement_score":0.07252156,"about_ca_system_score_codex":0.00001640322,"about_ca_system_score_gemma":0.000015013557,"threshold_uncertainty_score":0.69910043},"labels":[],"label_agreement":null},{"id":"W2796092606","doi":"10.1128/aem.00275-18","title":"The Protease ClpXP and the PAS Domain Protein DivL Regulate CtrA and Gene Transfer Agent Production in Rhodobacter capsulatus","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Rhodobacter; Gene transfer; Biology; Protease; Gene; Bacterial protein; Horizontal gene transfer; Rhodobacter sphaeroides; Microbiology; Chemistry; Biochemistry; Bacteria; Genetics; Enzyme; Mutant; Phylogenetics","score_opus":0.003068284414099443,"score_gpt":0.15695956576168194,"score_spread":0.15389128134758248,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2796092606","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965675,0.0010252992,0.000020702082,0.0013257762,0.00007520924,0.00092734944,0.000024035986,0.000005104809,0.000029021028],"genre_scores_gemma":[0.99775904,0.001386117,0.00019037613,0.00022221995,0.00014890144,0.00012059869,0.000068626156,0.000014326017,0.00008976499],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99898034,0.00010117789,0.00018801873,0.00043926912,0.000023311008,0.00026787014],"domain_scores_gemma":[0.9996774,0.000007191943,0.00003736243,0.00023559,0.0000030668436,0.000039396607],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029175103,0.00017504212,0.0001484116,0.000018579114,0.00024620263,0.000022433687,0.000093134244,0.0002477099,0.0000052811965],"category_scores_gemma":[0.0000048639936,0.00010453762,0.00002249976,0.000027757898,0.0018201083,0.000001840431,0.00017432407,0.00013698806,0.0000021743922],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004326366,0.000027317823,0.00026293503,0.0000055233886,0.000028413671,6.9858515e-7,0.0001165882,2.1187633e-7,0.9871575,0.00026384453,0.00001405474,0.0116902655],"study_design_scores_gemma":[0.0016922343,0.00027431743,0.008598067,0.0000050745375,0.000016743928,0.00012259344,0.00016878583,0.0000025553359,0.96164316,0.0006507691,0.026636906,0.00018880209],"about_ca_topic_score_codex":0.00001754646,"about_ca_topic_score_gemma":0.00007959898,"teacher_disagreement_score":0.02662285,"about_ca_system_score_codex":0.00001014188,"about_ca_system_score_gemma":0.0000071671293,"threshold_uncertainty_score":0.67062646},"labels":[],"label_agreement":null},{"id":"W2799832481","doi":"10.1128/aem.00485-18","title":"Redefinition and Unification of the SXT/R391 Family of Integrative and Conjugative Elements","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Vibrio cholerae; Biology; Integrase; Genetics; Gene; GenBank; Integrases; Gene cassette; Microbiology; Plasmid; Bacteria; Integron","score_opus":0.006318342637325732,"score_gpt":0.20949035349636738,"score_spread":0.20317201085904166,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2799832481","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988774,0.0002684297,0.000022920312,0.000059899383,0.000014121944,0.0001559052,0.00013391073,7.93456e-7,0.00046660984],"genre_scores_gemma":[0.998645,0.00093943067,0.00019406393,0.000061840874,0.000013437485,0.000009855723,0.00010502319,0.0000037223176,0.000027641423],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99960345,0.000033623528,0.00011204903,0.00015752226,0.000016996573,0.00007636612],"domain_scores_gemma":[0.9998101,0.000011034465,0.000077010605,0.00008263897,0.0000051368875,0.000014086517],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000058598245,0.00007325114,0.00009897378,0.000011949232,0.00005435206,0.0000019465203,0.000039908904,0.00005476625,0.000004471697],"category_scores_gemma":[0.000006895294,0.0000489776,0.000010843328,0.000015442713,0.0012573552,0.0000013754747,0.00018853003,0.000031346262,5.581636e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058198177,0.000018210834,0.0048889644,0.0000071365184,0.00004152515,2.122861e-8,0.0002127231,2.0132461e-8,0.9933139,0.00028872606,0.00004776629,0.0011228137],"study_design_scores_gemma":[0.00040361015,0.00028641708,0.13425152,0.0000067048127,0.000010889424,0.0000037392438,0.0010488925,0.0000012338256,0.8625931,0.00016374735,0.0011790936,0.000051020124],"about_ca_topic_score_codex":0.000008578053,"about_ca_topic_score_gemma":0.000006909306,"teacher_disagreement_score":0.13072075,"about_ca_system_score_codex":0.0000053253557,"about_ca_system_score_gemma":0.0000048200664,"threshold_uncertainty_score":0.46327776},"labels":[],"label_agreement":null},{"id":"W2801472250","doi":"10.1128/aem.00391-18","title":"Helicobacter pylori Biofilm Formation Is Differentially Affected by Common Culture Conditions, and Proteins Play a Central Role in the Biofilm Matrix","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Government of Canada","keywords":"Biofilm; Microbiology; Helicobacter pylori; Extracellular polymeric substance; Biology; Extracellular matrix; Bacteria; Chemistry; Cell biology; Genetics","score_opus":0.004121459634803032,"score_gpt":0.2065195021968858,"score_spread":0.20239804256208277,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2801472250","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996763,0.00037243796,0.000022326583,0.0012082729,0.00005201379,0.0008852707,0.00056332967,0.000026518816,0.00010683542],"genre_scores_gemma":[0.9951418,0.00040721346,0.000084000756,0.0022422906,0.000075138174,0.000097715,0.0018806545,0.000014887285,0.000056324283],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988817,0.00007857207,0.00026007503,0.00031993497,0.000047227863,0.00041247974],"domain_scores_gemma":[0.9996557,0.00001910583,0.00008711159,0.0001636694,0.0000043038067,0.000070113405],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000068662186,0.00024479665,0.00030490395,0.0000628243,0.00017859653,0.00001811338,0.00008028496,0.00025047813,0.00007553109],"category_scores_gemma":[0.0000023991472,0.00016661282,0.000033009026,0.000062317085,0.00063537405,0.000059179325,0.000102186656,0.00028965736,0.000042553136],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015809642,0.00020333655,0.050491184,0.000017015664,0.00010339836,0.0000034195834,0.0028657147,3.0284237e-8,0.9430909,0.000021726684,0.0026298694,0.00041529196],"study_design_scores_gemma":[0.0069204895,0.0019564854,0.7743297,0.00006134462,0.00027841484,0.00084407645,0.0032802785,0.000027549057,0.19123758,0.00008779021,0.020569231,0.0004070166],"about_ca_topic_score_codex":0.000029843928,"about_ca_topic_score_gemma":0.000046456094,"teacher_disagreement_score":0.75185335,"about_ca_system_score_codex":0.000057971836,"about_ca_system_score_gemma":0.000004274959,"threshold_uncertainty_score":0.6794274},"labels":[],"label_agreement":null},{"id":"W2802422853","doi":"10.1128/aem.00545-18","title":"Imidacloprid Decreases Honey Bee Survival Rates but Does Not Affect the Gut Microbiome","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect and Pesticide Research","field":"Agricultural and Biological Sciences","cited_by":100,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"National Institute of General Medical Sciences; National Institute of Food and Agriculture; National Institutes of Health; Fulbright Canada","keywords":"Imidacloprid; Honey bee; Biology; Neonicotinoid; Microbiome; Gut flora; Insect; Pesticide; Microbiology; Toxicology; Zoology; Botany; Ecology; Immunology; Bioinformatics","score_opus":0.012133188170869664,"score_gpt":0.21559645289626594,"score_spread":0.20346326472539628,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2802422853","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978231,0.00018235116,0.0000013178908,0.00065916387,0.00013250507,0.00027325444,0.0003539811,0.00002821003,0.0005461218],"genre_scores_gemma":[0.9978793,0.00025318426,0.00002708634,0.00068806746,0.0004745951,0.000024462535,0.00029090306,0.0000025395195,0.00035983376],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988071,0.00010898973,0.00016620778,0.00038895942,0.00005766822,0.0004710832],"domain_scores_gemma":[0.9993738,0.00040053183,0.00005417189,0.0000731131,0.0000056611343,0.000092706454],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00024679434,0.00021020627,0.00020949295,0.000012664309,0.00052816124,0.000050874565,0.00027887948,0.00014701493,0.0015889037],"category_scores_gemma":[0.000009153579,0.00006476905,0.00006179686,0.000074841664,0.0011034742,0.000031386426,0.00026415373,0.00014986045,0.0003115851],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008486237,0.000053093394,0.0035923352,0.0000032700232,0.000023591248,0.0000023140105,0.000054809887,7.516624e-8,0.9897801,0.00017645893,0.00020537188,0.00602369],"study_design_scores_gemma":[0.0002652255,0.00031400824,0.09595138,0.0000050774497,0.000019261033,0.00006980547,0.0004958414,0.000002742565,0.88474166,0.0002732929,0.017591638,0.00027004184],"about_ca_topic_score_codex":0.00032027374,"about_ca_topic_score_gemma":0.0003300887,"teacher_disagreement_score":0.10503844,"about_ca_system_score_codex":0.00002299698,"about_ca_system_score_gemma":0.000004882487,"threshold_uncertainty_score":0.9993238},"labels":[],"label_agreement":null},{"id":"W2803829912","doi":"10.1128/aem.01400-17","title":"Functional Analysis of Genes Comprising the Locus of Heat Resistance in Escherichia coli","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Innovates Bio Solutions; Alberta Innovates - Health Solutions; Alberta Livestock and Meat Agency; Canada Research Chairs; Government of Canada","keywords":"Escherichia coli; Biology; Plasmid; Gene; Locus (genetics); Salmonella enterica; Heat shock; Heat shock protein; Genetics; Gene expression; Molecular biology","score_opus":0.009159207826424607,"score_gpt":0.2221788180267682,"score_spread":0.2130196102003436,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2803829912","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970422,0.0021674514,0.00007942802,0.000085993415,0.000018410838,0.000101653226,0.00005361234,8.3962067e-7,0.00045041565],"genre_scores_gemma":[0.99866664,0.00090683607,0.00019029592,0.000048933733,0.00001640185,0.000013015,0.00008036244,0.000005020589,0.00007249557],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99944216,0.000033140193,0.00015700689,0.00020026896,0.00003360144,0.00013381192],"domain_scores_gemma":[0.9995871,0.000023344304,0.00008631404,0.00028164266,0.00000448933,0.000017085627],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012785799,0.00008698432,0.00020549758,0.00003225204,0.00012982504,0.0000052078376,0.00015237562,0.000070357455,0.000012863761],"category_scores_gemma":[0.000008595954,0.00006636019,0.00004998713,0.00004188086,0.000799251,0.0000016771112,0.00027540338,0.000058984402,5.9808343e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009511335,0.00004260082,0.058591977,0.000008256184,0.00026491212,2.8980077e-7,0.000038125276,0.00009547221,0.94057995,0.00008441517,0.000054481596,0.00014439036],"study_design_scores_gemma":[0.0005479399,0.00005953227,0.66771257,0.0000046087507,0.000096200405,9.173902e-7,0.00027863574,0.000025757061,0.32739824,0.00004234446,0.0037211068,0.0001121386],"about_ca_topic_score_codex":0.00005484459,"about_ca_topic_score_gemma":0.00033412062,"teacher_disagreement_score":0.6131817,"about_ca_system_score_codex":0.000009976168,"about_ca_system_score_gemma":0.000009428282,"threshold_uncertainty_score":0.2944874},"labels":[],"label_agreement":null},{"id":"W2804032752","doi":"10.1128/aem.01481-17","title":"Heterologous Production of the Photosynthetic Reaction Center and Light Harvesting 1 Complexes of the Thermophile Thermochromatium tepidum in the Mesophile Rhodobacter sphaeroides and Thermal Stability of a Hybrid Core Complex","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Genome British Columbia; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Rhodobacter sphaeroides; Photosynthetic reaction centre; Thermophile; Light-harvesting complex; Photosynthesis; Dimer; Photosystem I; Chemistry; Biophysics; Biology; Photochemistry; Biochemistry; Photosystem II; Organic chemistry","score_opus":0.014479496099690152,"score_gpt":0.20323509719569827,"score_spread":0.1887556010960081,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2804032752","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99902517,0.00012091286,0.000002768832,0.00019832897,0.000052117794,0.0003966646,0.00008534829,0.0000013374959,0.00011738243],"genre_scores_gemma":[0.9997413,0.000088741705,0.00002221556,0.00007874191,0.000017949531,0.000016690483,0.000021286383,0.000008304129,0.0000047495914],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993055,0.00007853751,0.00021089592,0.00024077178,0.00003837619,0.00012594697],"domain_scores_gemma":[0.9992555,0.000022237382,0.0002933462,0.0004102899,0.0000051756124,0.000013486273],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021577594,0.0001259893,0.00018695091,0.000009458598,0.00015661138,0.000006689208,0.00022403161,0.0000592418,0.000006554244],"category_scores_gemma":[0.000019130133,0.00006700914,0.000039282742,0.000011774176,0.00091432873,0.0000059241593,0.0002831395,0.000077435754,9.274879e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007103608,0.00009047036,0.00685673,0.000043993456,0.000019476578,1.1707476e-7,0.00025090433,7.498268e-7,0.9920114,0.000024429743,0.0000028138927,0.00062785984],"study_design_scores_gemma":[0.00029939238,0.00008593765,0.10685,0.000019662835,0.00001960932,0.000092950184,0.000249912,0.0000070433457,0.8920011,0.0001970662,0.00011757977,0.00005973918],"about_ca_topic_score_codex":0.000046941073,"about_ca_topic_score_gemma":0.0000333165,"teacher_disagreement_score":0.10001031,"about_ca_system_score_codex":0.0000052916607,"about_ca_system_score_gemma":0.0000064323854,"threshold_uncertainty_score":0.33688822},"labels":[],"label_agreement":null},{"id":"W2805408650","doi":"10.1128/aem.01171-18","title":"Metabolic Capability and Phylogenetic Diversity of Mono Lake during a Bloom of the Eukaryotic Phototroph Picocystis sp. Strain ML","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Agouron Institute","keywords":"Phototroph; Water column; Bloom; Epilimnion; Eutrophication; Biology; Algal bloom; Ecology; Extreme environment; Phylogenetic diversity; Transect; Cyanobacteria; Microcystis; Hypolimnion; Nutrient; Algae; Photosynthesis; Botany; Phytoplankton; Phylogenetic tree","score_opus":0.004561687556312223,"score_gpt":0.1615618400057682,"score_spread":0.15700015244945598,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2805408650","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99905854,0.00010704382,0.000004213401,0.000023629524,0.000048695252,0.0002471281,0.00024479133,0.000005046055,0.00026088406],"genre_scores_gemma":[0.9995814,0.00011016423,0.00011931769,0.00011321466,0.00001373071,0.000004311401,0.000023566052,0.0000066542925,0.000027661526],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990906,0.00014591693,0.0002095493,0.000291979,0.00003126588,0.00023068601],"domain_scores_gemma":[0.999465,0.000053626045,0.00012885024,0.00030578862,0.0000013852151,0.000045361456],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00012429837,0.00015596663,0.0002920764,0.000018580688,0.00033695233,0.0000017990761,0.00026703798,0.00014055324,0.0015385011],"category_scores_gemma":[0.0000044973217,0.00012524551,0.000045895827,0.00005844772,0.0034943356,0.000022185623,0.001651461,0.00015292325,0.000019247616],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047686975,0.00007591949,0.22191012,0.000011457313,0.000021993674,2.5320466e-7,0.00051819766,0.000011596352,0.7770819,0.000025278363,0.000012407904,0.0002832063],"study_design_scores_gemma":[0.00048367443,0.00010795028,0.85577786,0.0000026965874,0.000043609518,0.000026532978,0.00011639905,0.0000058791456,0.14259909,0.00047139265,0.00025839888,0.00010648676],"about_ca_topic_score_codex":0.00024517198,"about_ca_topic_score_gemma":0.0008453981,"teacher_disagreement_score":0.6344828,"about_ca_system_score_codex":0.000021556256,"about_ca_system_score_gemma":0.000003839935,"threshold_uncertainty_score":0.9993742},"labels":[],"label_agreement":null},{"id":"W2806892099","doi":"10.1128/aem.00991-18","title":"Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":true,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Science Foundation","keywords":"Gene; Gene expression; Fungus; Biology; RNA; Transcription (linguistics); Botany; Genetics","score_opus":0.004924796541416591,"score_gpt":0.20641652644925756,"score_spread":0.20149172990784098,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2806892099","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976389,0.0010667582,0.00077542366,0.00002943205,0.00011158319,0.00014719756,0.000024281573,0.000004045456,0.0002024119],"genre_scores_gemma":[0.998345,0.00057946384,0.00030895628,0.000110772955,0.0004298546,0.000021336638,0.00017284349,0.000012101771,0.000019671634],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99929154,0.000024469919,0.00013771752,0.0003115337,0.000023789138,0.00021095423],"domain_scores_gemma":[0.9997715,0.000011558454,0.000030119054,0.00015183662,0.000001330549,0.000033685614],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006865356,0.00013834368,0.00010864992,0.000020289022,0.000093214294,0.00001551422,0.00009360392,0.00013461342,0.00003090121],"category_scores_gemma":[0.0000013966602,0.00010786954,0.000021788816,0.00001868768,0.00021184405,0.0000017483469,0.0001273556,0.00008570073,0.000004784663],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003130251,0.000027201317,0.0015731788,0.0000038298936,0.000007561793,0.0000010156283,0.00014299569,0.000004582004,0.9960725,0.000012299952,0.00022462916,0.0018989275],"study_design_scores_gemma":[0.00064200984,0.00013386123,0.024631837,0.0000045412376,0.000007214248,0.00005426596,0.00041491073,0.000009787515,0.96642697,0.000021005695,0.007501608,0.00015198057],"about_ca_topic_score_codex":0.0000034293087,"about_ca_topic_score_gemma":0.000008398163,"teacher_disagreement_score":0.029645499,"about_ca_system_score_codex":0.0000060147613,"about_ca_system_score_gemma":0.000002292655,"threshold_uncertainty_score":0.4398792},"labels":[],"label_agreement":null},{"id":"W2807946826","doi":"10.1128/aem.00863-18","title":"Phenotypic Divergence along Geographic Gradients Reveals Potential for Rapid Adaptation of the White-Nose Syndrome Pathogen, Pseudogymnoascus destructans, in North America","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bat Biology and Ecology Studies","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Phenotypic trait; Adaptation (eye); Epizootic; Genetic divergence; Ecology; Zoology; Phenotype; Outbreak; Genetic diversity; Genetics; Population; Virology","score_opus":0.006224381041152345,"score_gpt":0.15935768967326677,"score_spread":0.15313330863211444,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2807946826","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985444,0.0003300813,0.000010432809,0.00014704761,0.00017663516,0.00038883084,0.00038066055,0.0000080458585,0.000013891666],"genre_scores_gemma":[0.99895406,0.00031735544,0.00013181711,0.00022126976,0.000038734055,0.000052736283,0.00027023695,0.0000013142989,0.00001245858],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99902874,0.000068661946,0.00024155162,0.00033820097,0.000025290172,0.0002975638],"domain_scores_gemma":[0.9997126,0.00005593242,0.00013336432,0.000062179126,0.0000056556423,0.000030269604],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000094929244,0.00014784822,0.00023432303,0.00001606177,0.00031081503,0.000003028341,0.00018485697,0.00014402963,0.000079406585],"category_scores_gemma":[0.000006102899,0.000063385436,0.0000647292,0.00012589061,0.0010412108,0.000026083968,0.00016209936,0.00008468022,0.000008473995],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006569984,0.00006535727,0.5541254,0.0000040530485,0.000029125244,9.5333945e-7,0.00018413656,0.000007995916,0.4353848,0.000019777715,0.00002737647,0.010085315],"study_design_scores_gemma":[0.00028423354,0.00039276862,0.99704874,0.0000034632162,0.00002624247,0.000032701828,0.00085031,0.000012936551,0.00043204706,0.00025403083,0.00053655874,0.00012594827],"about_ca_topic_score_codex":0.00005502533,"about_ca_topic_score_gemma":0.001186074,"teacher_disagreement_score":0.44292334,"about_ca_system_score_codex":0.000014486841,"about_ca_system_score_gemma":0.0000022751865,"threshold_uncertainty_score":0.3836385},"labels":[],"label_agreement":null},{"id":"W2808076584","doi":"10.1128/aem.00604-18","title":"Poly(3-Hydroxybutyrate) (PHB) Polymerase PhaC1 and PHB Depolymerase PhaZa1 of Ralstonia eutropha Are Phosphorylated <i>In Vivo</i>","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"biodegradable polymer synthesis and properties","field":"Materials Science","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Deutsche Forschungsgemeinschaft","keywords":"Cupriavidus necator; Ralstonia; Polyhydroxyalkanoates; Polyhydroxybutyrate; Biochemistry; Phosphorylation; Bioplastic; ATP synthase; Chemistry; Biology; Bacteria; Enzyme","score_opus":0.005401824189697355,"score_gpt":0.17433680575500263,"score_spread":0.16893498156530526,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2808076584","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95420253,0.04464234,0.000011337866,0.000113741226,0.00013700343,0.00016039507,0.00033471765,0.000025156876,0.00037275706],"genre_scores_gemma":[0.998005,0.0008582478,0.00019802773,0.0005870709,0.00005759882,0.00002285908,0.00002159168,0.00002807723,0.0002215659],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984283,0.00007767754,0.00040623965,0.0005632691,0.000059262267,0.00046526833],"domain_scores_gemma":[0.99940133,0.000049495593,0.00018683085,0.0002467425,0.0000031241548,0.000112495225],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00013421566,0.00031068048,0.00047710785,0.000074978554,0.00017173516,0.000024829038,0.00016984805,0.00019813071,0.0009322801],"category_scores_gemma":[0.0000027047345,0.00025480625,0.000039670897,0.00006893219,0.0013266088,0.00008235618,0.00019160435,0.00011542077,0.000058605845],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025970966,0.00013975576,0.0021445334,0.00002188023,0.000018779872,0.0000058966684,0.0002779521,8.409781e-8,0.98702157,0.000043900625,0.000097037926,0.009968914],"study_design_scores_gemma":[0.0010657804,0.00016098113,0.00086534244,0.000024542234,0.000029235289,0.00006829213,0.0003702603,0.000012851997,0.99535364,0.00003021332,0.0017179978,0.00030087493],"about_ca_topic_score_codex":0.0005993989,"about_ca_topic_score_gemma":0.00006372909,"teacher_disagreement_score":0.04380241,"about_ca_system_score_codex":0.000026515341,"about_ca_system_score_gemma":0.00001563744,"threshold_uncertainty_score":0.9999904},"labels":[],"label_agreement":null},{"id":"W2809070750","doi":"10.1128/aem.01095-18","title":"An Engineered Aro1 Protein Degradation Approach for Increased <i>cis,cis</i> -Muconic Acid Biosynthesis in Saccharomyces cerevisiae","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"Fonds de recherche du Québec – Nature et technologies; Concordia University; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Saccharomyces cerevisiae; Biochemistry; Muconic acid; Auxotrophy; Amino acid; Chemistry; Biosynthesis; Fermentation; Degron; Biology; Yeast; Mutant; Enzyme; Gene","score_opus":0.0037192778214939918,"score_gpt":0.17699079469467838,"score_spread":0.17327151687318437,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2809070750","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99333256,0.00051788683,0.0053044506,0.000024255729,0.000055762648,0.00059041235,0.00011386094,0.000018797236,0.00004200184],"genre_scores_gemma":[0.99080455,0.0001335385,0.006832559,0.000097977296,0.00031754162,0.00012799914,0.0016189843,0.000026983918,0.00003984415],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989256,0.000033877997,0.00020764706,0.000537433,0.000022573015,0.00027281482],"domain_scores_gemma":[0.99962795,0.0000033513195,0.00005965361,0.00024637612,0.0000050130575,0.00005763018],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017675698,0.00021133154,0.00020479456,0.00006316745,0.00007187622,0.0000137385805,0.00012347272,0.0002231022,0.000014121291],"category_scores_gemma":[0.000008414085,0.00019836033,0.00003985327,0.000052478117,0.00016086611,0.0000067048218,0.000045292276,0.000068647656,0.0000053210915],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013940985,0.00011303787,0.000081912294,0.000025229643,0.000024738527,1.2332796e-7,0.000026455411,0.000011459651,0.9958411,0.00004778416,0.000054193624,0.003634549],"study_design_scores_gemma":[0.0006874271,0.00031762605,0.00047193767,0.000005745273,0.000017769384,0.000027478874,0.000090610294,0.000059459027,0.99078166,0.000015813037,0.007276134,0.0002483143],"about_ca_topic_score_codex":0.000016399345,"about_ca_topic_score_gemma":0.000006623994,"teacher_disagreement_score":0.0072219404,"about_ca_system_score_codex":0.000020276293,"about_ca_system_score_gemma":0.0000100039815,"threshold_uncertainty_score":0.80889},"labels":[],"label_agreement":null},{"id":"W2811492966","doi":"10.1128/aem.01430-18","title":"“Candidatus Nitrosotenuis aquarius,” an Ammonia-Oxidizing Archaeon from a Freshwater Aquarium Biofilter","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biofilter; Nitrification; Ammonia; Oxidizing agent; Candidatus; Environmental chemistry; Biology; Ecology; Environmental science; Bacteria; Chemistry; Environmental engineering; 16S ribosomal RNA; Nitrogen; Biochemistry","score_opus":0.005761045631662915,"score_gpt":0.18094137613008582,"score_spread":0.1751803304984229,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2811492966","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99845135,0.00006860999,0.000062027764,0.00009142079,0.00014198606,0.00026303364,0.00034115295,0.000055769855,0.0005246532],"genre_scores_gemma":[0.98101795,0.0000333226,0.016718267,0.00058218447,0.00021497867,0.000025597692,0.0010549506,0.000039661438,0.0003130797],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981514,0.00006403951,0.0002615962,0.0008156235,0.00008556256,0.00062176626],"domain_scores_gemma":[0.9993131,0.000024433322,0.00007702367,0.00038225605,9.630928e-7,0.00020221979],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000088787165,0.00036529623,0.00029000247,0.000045415072,0.00027284972,0.00003794358,0.00025034722,0.00021279443,0.0031734172],"category_scores_gemma":[8.5978553e-7,0.00029865766,0.000060404807,0.000057088288,0.0013245369,0.00014273677,0.00047522032,0.00015974781,0.0026161687],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012867535,0.00014890403,0.01866709,0.0000013023209,0.00004706347,0.000015073282,0.0008569103,0.0000013442232,0.97689396,0.000018740284,0.0003437247,0.0028772296],"study_design_scores_gemma":[0.0015868921,0.0005129689,0.018444827,0.000005176107,0.000075644086,0.00009448344,0.0003614581,0.00006940587,0.943671,0.0010835412,0.033515066,0.0005795661],"about_ca_topic_score_codex":0.0015611466,"about_ca_topic_score_gemma":0.0008940582,"teacher_disagreement_score":0.03322297,"about_ca_system_score_codex":0.00011970097,"about_ca_system_score_gemma":0.0000034338457,"threshold_uncertainty_score":0.99994653},"labels":[],"label_agreement":null},{"id":"W28130301","doi":"10.1128/aem.03172-16","title":"Favoleggiando. Fiabe e leggende bresciane fra letteratura, storia e folklore","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Linguistic Studies and Language Acquisition","field":"Computer Science","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; NIH Office of the Director; Government of Canada","keywords":"Folklore; Art; Humanities; Literature","score_opus":0.0015845866230836027,"score_gpt":0.14399502103268544,"score_spread":0.14241043440960183,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W28130301","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94880885,0.007590559,0.028685763,0.0015900617,0.0018150869,0.0005354273,0.00015574427,0.00021981078,0.010598688],"genre_scores_gemma":[0.99423075,0.000041921343,0.0025525573,0.0023143077,0.00045049758,0.000013925662,0.00014827409,0.000008364483,0.0002394011],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991,0.000017617776,0.00015709149,0.00039368437,0.00004221336,0.00028934807],"domain_scores_gemma":[0.9996502,0.00003640145,0.000053246735,0.0002209611,0.000002983499,0.000036219528],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000057174148,0.0001616607,0.0001703328,0.000031210442,0.0001847143,0.00003965944,0.00020346465,0.00009212606,0.000065002125],"category_scores_gemma":[0.0000020792825,0.00013950694,0.000034694007,0.00004456034,0.0001246471,0.000041808846,0.00025681447,0.00010041909,0.0000619948],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014235045,0.00009567397,0.0008400154,0.000010595762,0.000039691076,0.000048524085,0.0005584939,0.000016229404,0.95254636,0.019769989,0.018196424,0.007863796],"study_design_scores_gemma":[0.0073365765,0.00054069015,0.06769531,0.000041110306,0.00011931918,0.000811099,0.0016082476,0.00059016375,0.08730986,0.011874977,0.8194212,0.0026514998],"about_ca_topic_score_codex":0.000064657754,"about_ca_topic_score_gemma":0.000005527762,"teacher_disagreement_score":0.86523646,"about_ca_system_score_codex":0.000041098934,"about_ca_system_score_gemma":0.0000036652516,"threshold_uncertainty_score":0.56889284},"labels":[],"label_agreement":null},{"id":"W2848078396","doi":"10.1128/aem.00914-18","title":"Mediation Analysis as a Means of Identifying Dietary Components That Differentially Affect the Fecal Microbiota of Infants Weaned by Modified Baby-Led and Traditional Approaches","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Weaning; Microbiome; Gut flora; Gut microbiome; Biology; Feces; Mediation; Bioinformatics; Immunology; Ecology; Animal science","score_opus":0.02624527228568202,"score_gpt":0.2175501518045556,"score_spread":0.1913048795188736,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2848078396","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981328,0.00052191556,0.00038090348,0.000063232685,0.000049577797,0.00026944213,0.00049497955,0.0000033866422,0.00008375788],"genre_scores_gemma":[0.99569464,0.00040481435,0.000157257,0.00011913047,0.000043126558,0.000010874588,0.0035336134,0.000012521203,0.000024053104],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989932,0.0000944991,0.000267757,0.00038269802,0.000050967974,0.00021084292],"domain_scores_gemma":[0.9995214,0.00003617155,0.00019019244,0.00019325687,0.000004660918,0.000054329423],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001527095,0.00019154331,0.0003272319,0.00006236913,0.00012950132,0.000008639089,0.00013696746,0.00019908359,0.00003778439],"category_scores_gemma":[0.0000028521083,0.00014994902,0.00008969394,0.000057304547,0.0008008759,0.0000046166606,0.00015358522,0.000087122535,0.0000022119364],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018650004,0.0001424141,0.009128691,0.000030472243,0.000473991,1.6339958e-7,0.00021775484,0.0000060914476,0.98928696,0.000040598166,0.000119927136,0.0003664178],"study_design_scores_gemma":[0.0016461959,0.00039102757,0.26861483,0.000010323653,0.00035973382,0.00003772673,0.00031907213,0.00013515363,0.7279166,0.000083106665,0.00021901247,0.0002672049],"about_ca_topic_score_codex":0.000046146117,"about_ca_topic_score_gemma":0.00003823236,"teacher_disagreement_score":0.26137036,"about_ca_system_score_codex":0.000012135357,"about_ca_system_score_gemma":0.000010951485,"threshold_uncertainty_score":0.61147434},"labels":[],"label_agreement":null},{"id":"W2884982226","doi":"10.1128/aem.00970-18","title":"Assessment of Rumen Microbiota from a Large Dairy Cattle Cohort Reveals the Pan and Core Bacteriomes Contributing to Varied Phenotypes","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":180,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Earmarked Fund for China Agriculture Research System; National Natural Science Foundation of China","keywords":"Rumen; Biology; Dairy cattle; Population; Cohort; Animal science; Food science; Fermentation; Medicine; Environmental health; Internal medicine","score_opus":0.00819085843253738,"score_gpt":0.21051888795132548,"score_spread":0.2023280295187881,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2884982226","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975792,0.000112766094,0.000005591912,0.0005114451,0.000047460126,0.00032046562,0.0011868379,0.000010308066,0.00022589197],"genre_scores_gemma":[0.9980178,0.00007047768,0.00011129348,0.0009299145,0.000093228344,0.000019816813,0.0007237726,0.0000014663307,0.000032254156],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99911004,0.000050311104,0.0001888712,0.00032744446,0.000025418829,0.00029789735],"domain_scores_gemma":[0.9996335,0.00014888114,0.00009019342,0.000064877175,0.0000062479294,0.000056286735],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016007147,0.00013766155,0.0002573437,0.000008318933,0.00026585005,0.000013237325,0.00011709293,0.00009591691,0.00030642588],"category_scores_gemma":[0.0000049824603,0.00005676582,0.000026319563,0.000050690618,0.0005006109,0.000017965305,0.00028962237,0.00007043289,0.000017854461],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030339885,0.000067392466,0.11391158,0.000001950677,0.000025685069,2.2308168e-7,0.00008060967,2.6839004e-8,0.88372827,0.00036625925,0.00016882554,0.0016188488],"study_design_scores_gemma":[0.0002812988,0.00023471696,0.9627917,0.000006513835,0.000018711173,0.0000068986415,0.00049416604,0.0000013328176,0.028925613,0.0003464931,0.006772374,0.00012017725],"about_ca_topic_score_codex":0.00008772982,"about_ca_topic_score_gemma":0.000055326305,"teacher_disagreement_score":0.85480267,"about_ca_system_score_codex":0.000017179993,"about_ca_system_score_gemma":0.0000026636158,"threshold_uncertainty_score":0.33551484},"labels":[],"label_agreement":null},{"id":"W2886991718","doi":"10.1128/aem.01634-18","title":"Microbial Source Tracking Using Quantitative and Digital PCR To Identify Sources of Fecal Contamination in Stormwater, River Water, and Beach Water in a Great Lakes Area of Concern","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fecal contamination and water quality","field":"Environmental Science","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Environment and Climate Change Canada","funders":"Environment and Climate Change Canada","keywords":"Contamination; Fecal coliform; Stormwater; Source tracking; Indicator bacteria; Environmental science; Watershed; Digital polymerase chain reaction; Outfall; Water quality; Sewage; Feces; Estuary; Hydrology (agriculture); Biology; Ecology; Surface runoff; Environmental engineering; Polymerase chain reaction; Geology","score_opus":0.02515458562384181,"score_gpt":0.25103398467337124,"score_spread":0.22587939904952942,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2886991718","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.999319,0.000034653396,0.0002491956,0.000033284017,0.00002276537,0.0002446767,0.00004679613,0.0000041832564,0.000045416662],"genre_scores_gemma":[0.99963397,0.000008151899,0.00013392679,0.000065807326,0.0000067433702,0.000004658678,0.0000866542,0.000009291494,0.00005076879],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989976,0.000061086816,0.00031265296,0.0003394623,0.00005069891,0.00023847798],"domain_scores_gemma":[0.9997854,0.000036764315,0.000057467274,0.00006994184,0.000002497401,0.00004788573],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022266827,0.00015357551,0.00026898977,0.00008030712,0.000053971682,0.000017498145,0.000068214045,0.00010267869,0.00006932743],"category_scores_gemma":[0.0000035888013,0.00011360421,0.000017982971,0.000035083638,0.0011836673,0.0001534392,0.0002574758,0.00007478968,0.000008301536],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000959988,0.000059195565,0.15224066,0.000013279463,0.0000070343326,0.0000014253528,0.013575129,0.000019325633,0.8307386,0.000010314037,0.0000020357202,0.0032369986],"study_design_scores_gemma":[0.0016690416,0.0002806868,0.22947325,0.00003179216,0.000014116972,0.000031636082,0.0022855517,0.00017739339,0.76518726,0.00011206257,0.00049173,0.00024546593],"about_ca_topic_score_codex":0.00032380648,"about_ca_topic_score_gemma":0.00025810784,"teacher_disagreement_score":0.07723259,"about_ca_system_score_codex":0.000070424816,"about_ca_system_score_gemma":0.0000012614153,"threshold_uncertainty_score":0.46326452},"labels":[],"label_agreement":null},{"id":"W2888397164","doi":"10.1128/aem.01483-18","title":"Daqu Fermentation Selects for Heat-Resistant Enterobacteriaceae and Bacilli","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"China Scholarship Council; Alberta Livestock and Meat Agency; Canada Research Chairs","keywords":"Enterobacteriaceae; Bacilli; Microbiology; Fermentation; Biology; Bacteria; Escherichia coli; Food science; Genetics; Gene","score_opus":0.005978054280858899,"score_gpt":0.16982992839501906,"score_spread":0.16385187411416016,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2888397164","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989374,0.00007225144,0.00001567691,0.0001866967,0.000062621664,0.00029279184,0.00024885824,0.00001527662,0.00016839361],"genre_scores_gemma":[0.99843395,0.00011914527,0.00019641856,0.00044853202,0.000103400685,0.000022472346,0.0006124072,0.0000014315166,0.00006222822],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993326,0.000013562829,0.000121281766,0.00029249847,0.000017269378,0.00022277987],"domain_scores_gemma":[0.9998577,0.000024146197,0.000029596531,0.000029765362,0.0000025411516,0.000056216162],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005935899,0.00012399965,0.00012450578,0.0000068638446,0.00020626445,0.00002304609,0.00005559204,0.000091780785,0.0000966405],"category_scores_gemma":[9.601064e-7,0.00005770805,0.000020970734,0.000025517855,0.0002262037,0.000025841018,0.000075329386,0.00003789635,0.00001157502],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000086564236,0.000042389325,0.0024737124,0.0000039792944,0.000015093309,1.4882988e-7,0.000053313834,3.9642064e-8,0.9911329,0.00018135777,0.00009414364,0.0059163375],"study_design_scores_gemma":[0.0017345418,0.0032633757,0.5436769,0.000016988026,0.00006120924,0.00006455352,0.0008676567,0.000036104593,0.37646002,0.00085132045,0.07234206,0.00062524475],"about_ca_topic_score_codex":0.000008225237,"about_ca_topic_score_gemma":0.000038620976,"teacher_disagreement_score":0.6146729,"about_ca_system_score_codex":0.00001933036,"about_ca_system_score_gemma":0.0000011138699,"threshold_uncertainty_score":0.2353266},"labels":[],"label_agreement":null},{"id":"W2888800386","doi":"10.1128/aem.01632-18","title":"Antibiotic-Resistant Escherichia coli and Class 1 Integrons in Humans, Domestic Animals, and Wild Primates in Rural Uganda","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Morris Animal Foundation","keywords":"Antibiotic resistance; Antibiotics; Escherichia coli; Livestock; Biology; Bacteria; Resistance (ecology); Microbiology; Multiple drug resistance; Biotechnology; Ecology; Gene; Genetics","score_opus":0.0033831246597379808,"score_gpt":0.2008822274392718,"score_spread":0.19749910277953384,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2888800386","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99795675,0.0013933273,0.0000120229915,0.000055452965,0.000042235148,0.00023471615,0.00005315976,0.000005570011,0.00024676387],"genre_scores_gemma":[0.99772036,0.0013091657,0.0005699755,0.00016391618,0.000044622288,0.0000044193753,0.00013064117,0.000020427,0.000036442903],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989341,0.000040265466,0.00024276049,0.00044257427,0.000023027656,0.00031727654],"domain_scores_gemma":[0.99969906,0.000018529396,0.000064124935,0.0001579617,0.0000022524998,0.00005809796],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001132172,0.00021807782,0.00025981304,0.00004809214,0.000070153044,0.000022153148,0.000087092696,0.00022033197,0.000015421405],"category_scores_gemma":[0.000007442113,0.0002016641,0.000015476875,0.000038604485,0.0010481387,0.0000047494814,0.00021667697,0.00011347237,0.0000049672562],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018729066,0.000046979283,0.16189197,0.000021305768,0.000013526703,0.0000040997056,0.000073644325,1.854933e-7,0.83724123,0.00018096858,0.00003634027,0.0003024485],"study_design_scores_gemma":[0.0015994833,0.0005082918,0.8726433,0.000045916247,0.000018336612,0.00004571942,0.0009909722,0.000009258129,0.12051185,0.0001330719,0.0031114123,0.00038236417],"about_ca_topic_score_codex":0.000043979417,"about_ca_topic_score_gemma":0.00022418918,"teacher_disagreement_score":0.7167294,"about_ca_system_score_codex":0.000028667278,"about_ca_system_score_gemma":0.000011622905,"threshold_uncertainty_score":0.8223623},"labels":[],"label_agreement":null},{"id":"W2891660459","doi":"10.1128/aem.01589-18","title":"Bioaerosol Sampler Choice Should Consider Efficiency and Ability of Samplers To Cover Microbial Diversity","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Indoor Air Quality and Microbial Exposure","field":"Environmental Science","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency; Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec","funders":"","keywords":"Bioaerosol; Indoor bioaerosol; Environmental science; Aerosolization; Microorganism; Ecology; Biology; Aerosol; Meteorology; Bacteria; Geography","score_opus":0.018466370274898596,"score_gpt":0.2258626100320766,"score_spread":0.20739623975717802,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2891660459","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974411,0.000024524015,0.0004499683,0.00020586887,0.00011150073,0.0004369126,0.00035539462,0.00001626546,0.0009584556],"genre_scores_gemma":[0.99663436,0.000017441796,0.0008929244,0.002253366,0.000041527263,0.0000052740384,0.000054549877,0.000012125883,0.0000884425],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985502,0.00006412818,0.00029243136,0.0006208551,0.000068996575,0.00040338523],"domain_scores_gemma":[0.99940294,0.00011285325,0.00009285397,0.00024515094,0.0000028940326,0.0001432871],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00025034734,0.0002378746,0.00031503176,0.000032297165,0.00038530384,0.000011148928,0.00018666702,0.00020175592,0.0022367402],"category_scores_gemma":[0.000016767202,0.00022509633,0.000047638503,0.000084619045,0.002649591,0.00006197239,0.0013679558,0.00013940575,0.00031223043],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009744863,0.00011316153,0.042055763,0.0000106764965,0.000018447074,4.9813883e-7,0.0013251397,0.000012928074,0.9533584,0.00006724944,0.0019927179,0.0009475707],"study_design_scores_gemma":[0.0046233744,0.0011867504,0.32005575,0.000022984384,0.00013906711,0.00013517638,0.0011279455,0.00001778051,0.5476393,0.00050399714,0.12312967,0.0014182155],"about_ca_topic_score_codex":0.00084339856,"about_ca_topic_score_gemma":0.00019136342,"teacher_disagreement_score":0.4057191,"about_ca_system_score_codex":0.00009414956,"about_ca_system_score_gemma":0.0000061577402,"threshold_uncertainty_score":0.99867535},"labels":[],"label_agreement":null},{"id":"W2897886338","doi":"10.1128/aem.02114-18","title":"Biochemical Reconstruction of a Metabolic Pathway from a Marine Bacterium Reveals Its Mechanism of Pectin Depolymerization","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Polysaccharides and Plant Cell Walls","field":"Agricultural and Biological Sciences","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Pectin; Polysaccharide; Biochemistry; Cell wall; Bacteria; Biology; Marine bacteriophage; Monosaccharide; Metabolic pathway; Depolymerization; Glycoside hydrolase; Hydrolysis; Chemistry; Metabolism; Organic chemistry","score_opus":0.005196991202992845,"score_gpt":0.14806490981178508,"score_spread":0.14286791860879222,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2897886338","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99875885,0.00018289019,0.000008116296,0.000021345351,0.000069618545,0.00010224469,0.00057088386,0.0000069252105,0.00027912558],"genre_scores_gemma":[0.9988225,0.00029086898,0.00018315917,0.000053153566,0.00009318166,0.000004188108,0.00053401955,9.196526e-7,0.000017992861],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994124,0.000023768405,0.00020649418,0.00020805407,0.000023796974,0.00012546235],"domain_scores_gemma":[0.99974436,0.000043062384,0.00013959073,0.000035896697,0.0000023853213,0.000034725806],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000407684,0.00009781827,0.00020252197,0.0000092581395,0.000039752787,0.0000031844547,0.0000705895,0.0001167971,0.0008208498],"category_scores_gemma":[0.0000024043075,0.000047417663,0.000032231022,0.000045397064,0.00014133938,0.000020943591,0.00008942454,0.000041738676,0.000009825144],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039077855,0.000032919055,0.0014849955,0.0000028612365,0.000016932612,1.5278472e-7,0.000034866884,1.5170064e-8,0.979503,0.00042555184,0.000002739549,0.018456934],"study_design_scores_gemma":[0.00012000159,0.00009293682,0.016950011,0.0000053970766,0.00001491974,0.00002257074,0.00008880489,0.0000042438814,0.98189974,0.00036413732,0.0003518607,0.000085380736],"about_ca_topic_score_codex":0.00014307529,"about_ca_topic_score_gemma":0.000014432103,"teacher_disagreement_score":0.018371554,"about_ca_system_score_codex":0.0000028543632,"about_ca_system_score_gemma":0.0000015233372,"threshold_uncertainty_score":0.89877295},"labels":[],"label_agreement":null},{"id":"W2900327757","doi":"10.1128/aem.02231-18","title":"Focused Metabolism of β-Glucans by the Soil <i>Bacteroidetes</i> Species Chitinophaga pinensis","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Studies on Chitinases and Chitosanases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Vetenskapsrådet; Knut och Alice Wallenbergs Stiftelse","keywords":"Biology; Bacteroidetes; Nutrient; Biomass (ecology); Litter; Microbial population biology; Nutrient cycle; Fungus; Plant litter; Bacteria; Botany; Ecology; Soil microbiology; Microbial ecology; 16S ribosomal RNA; Soil water","score_opus":0.0033968910358670827,"score_gpt":0.16364295520981292,"score_spread":0.16024606417394585,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2900327757","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995237,0.002405421,0.000031276384,0.00016267953,0.00009501966,0.00012461664,0.00050832925,0.0000054205602,0.0014302616],"genre_scores_gemma":[0.9968201,0.0010530987,0.000070644586,0.0011048557,0.00026057777,0.000015999596,0.00040018503,0.000016839515,0.0002576967],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99920654,0.000026526903,0.00018543808,0.0003085252,0.000032154254,0.00024083361],"domain_scores_gemma":[0.9996151,0.000018827108,0.000090210815,0.00023269115,0.000004195673,0.000038978753],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000047672052,0.00018008739,0.0002020684,0.0000131753295,0.00015676195,0.0000066183584,0.00014495557,0.00009773196,0.000070398055],"category_scores_gemma":[0.0000043886985,0.00012774304,0.00006435159,0.000028139219,0.0010725225,0.0000014245459,0.00021543915,0.000059250033,0.000009096422],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005128863,0.000050539587,0.0009286689,0.0000039357496,0.00008754579,2.2968787e-7,0.0000636612,3.721626e-7,0.99106014,0.000051218933,0.0058418536,0.0018605586],"study_design_scores_gemma":[0.0005295846,0.00017540777,0.009379947,0.0000019146523,0.000035783152,0.000022866814,0.0004044538,4.3648583e-7,0.8769707,0.000020100715,0.112319544,0.00013926977],"about_ca_topic_score_codex":0.000018308307,"about_ca_topic_score_gemma":0.000043810236,"teacher_disagreement_score":0.11408943,"about_ca_system_score_codex":0.0000044503468,"about_ca_system_score_gemma":0.00000606963,"threshold_uncertainty_score":0.52092105},"labels":[],"label_agreement":null},{"id":"W2900459501","doi":"10.1128/aem.01891-18","title":"Metabolites of an Oil Field Sulfide-Oxidizing, Nitrate-Reducing <i>Sulfurimonas</i> sp. Cause Severe Corrosion","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Water Treatment and Disinfection","field":"Environmental Science","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Engineering and Physical Sciences Research Council; European Commission; Research Councils UK; Exxon Mobil Corporation","keywords":"Nitrate; Corrosion; Nitrite; Mackinawite; Sulfur; Sulfide; Oxidizing agent; Sulfate-reducing bacteria; Iron sulfide; Environmental chemistry; Oil field; Chemistry; Metallurgy; Materials science; Geology; Sulfate; Organic chemistry; Petroleum engineering","score_opus":0.005474798434507773,"score_gpt":0.18989970757525299,"score_spread":0.18442490914074522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2900459501","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995074,0.00009094516,0.000022807457,0.000027603148,0.00011119032,0.00009337255,0.000038811377,0.000027867334,0.004513443],"genre_scores_gemma":[0.9983206,0.00011552031,0.000650092,0.00029408562,0.0000606877,0.000011522428,0.00018689204,0.000016268212,0.00034435565],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99898803,0.000036184378,0.00021780824,0.00042592015,0.000052530806,0.00027954145],"domain_scores_gemma":[0.9995717,0.000031800864,0.00009310024,0.00021253682,0.0000012063043,0.000089683635],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00008651259,0.00020584068,0.00021157727,0.00003053005,0.00016460703,0.00001346789,0.00010492937,0.00014007524,0.0012608136],"category_scores_gemma":[0.0000021689655,0.00017433125,0.000040134546,0.000058177564,0.0004654847,0.00013861393,0.00017445529,0.00007972136,0.00022784117],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000066125474,0.00014863227,0.029325021,0.0000050850003,0.000012865937,0.0000018348267,0.00030860695,0.000012877145,0.96462846,0.000028386583,0.000318881,0.0051432475],"study_design_scores_gemma":[0.000640715,0.00033235998,0.012795687,0.0000058875557,0.000054778393,0.00006895021,0.00019359885,0.000012095942,0.9825735,0.00020285367,0.0029004386,0.00021912252],"about_ca_topic_score_codex":0.00042889142,"about_ca_topic_score_gemma":0.00007909068,"teacher_disagreement_score":0.017945077,"about_ca_system_score_codex":0.000048576047,"about_ca_system_score_gemma":0.0000030033536,"threshold_uncertainty_score":0.99965215},"labels":[],"label_agreement":null},{"id":"W2901240331","doi":"10.1128/aem.02439-18","title":"Iron Homeostasis in Bacillus subtilis Requires Siderophore Production and Biofilm Formation","year":2018,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":89,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Siderophore; Biofilm; Bacillus subtilis; Bacteria; Microorganism; Microbiology; Biology; Chemistry; Biochemistry","score_opus":0.0057032102212972325,"score_gpt":0.18441804189930752,"score_spread":0.17871483167801028,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2901240331","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99891514,0.0005088393,0.0000063345287,0.0001388769,0.00010306357,0.00015223314,0.000035430006,0.0000055488204,0.00013453461],"genre_scores_gemma":[0.997933,0.0010524781,0.00026081142,0.00017621052,0.00015330537,0.000005765386,0.0003725004,0.000010755692,0.000035216297],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999292,0.00002304736,0.00014826818,0.00032839656,0.00001638124,0.00019188017],"domain_scores_gemma":[0.99979097,0.0000031755999,0.000048546117,0.00012063191,0.000002466926,0.000034196848],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007273314,0.00012755717,0.00011312697,0.000036819234,0.000085836444,0.000011602769,0.000032631448,0.00016175928,0.000016443426],"category_scores_gemma":[0.000005257584,0.0001182021,0.000014386938,0.00002707035,0.0003616852,0.0000068777113,0.00010369083,0.000048214755,0.000009152584],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000910881,0.000020358599,0.0009529277,0.000008915235,0.0000057051675,5.289752e-7,0.000111857415,3.7005196e-7,0.9865801,0.000012330922,0.00015237197,0.012063481],"study_design_scores_gemma":[0.00035393258,0.00024018124,0.008629931,0.0000068964077,0.00000774507,0.00010620606,0.0003687362,0.0000034515406,0.98005337,0.000015437368,0.010044386,0.00016970308],"about_ca_topic_score_codex":0.000019325636,"about_ca_topic_score_gemma":0.00008034945,"teacher_disagreement_score":0.011893778,"about_ca_system_score_codex":0.000015566991,"about_ca_system_score_gemma":0.0000038214134,"threshold_uncertainty_score":0.48201418},"labels":[],"label_agreement":null},{"id":"W2905166401","doi":"10.1128/aem.02562-18","title":"Reports from a Healthy Community: the 7th Conference on Beneficial Microbes","year":2018,"lang":"en","type":"review","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Advanced Research","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Institute of Diabetes and Digestive and Kidney Diseases; National Cancer Institute; National Science Foundation","keywords":"Microbiome; Engineering ethics; Political science; Environmental ethics; Library science; Biotechnology; Biology; Engineering; Bioinformatics; Computer science","score_opus":0.028558722474373043,"score_gpt":0.27101265795124896,"score_spread":0.2424539354768759,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2905166401","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.05226591,0.94476557,0.000008250235,0.0000884063,0.0003269878,0.00086732034,0.001190944,0.000013941436,0.00047266268],"genre_scores_gemma":[0.027326882,0.96069676,0.00006724001,0.0015908408,0.00043744364,0.0000722282,0.009637969,0.000058873913,0.000111758214],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99791586,0.00033088468,0.00055100274,0.0007189108,0.000036373393,0.00044694415],"domain_scores_gemma":[0.9985959,0.000062107385,0.00038676555,0.00085040164,0.000004569081,0.00010026998],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002738328,0.00052590016,0.0008707488,0.000043635693,0.00051988347,0.000029413477,0.0003578835,0.0007427917,0.00007583507],"category_scores_gemma":[0.000005024027,0.00036715996,0.00018076315,0.000036421185,0.00070348824,0.0000013306077,0.0005269399,0.00065828155,0.000105035775],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023562371,0.00074915314,0.00005141884,0.0020564357,0.0007735791,0.000020494757,0.0005007784,4.5731483e-7,0.6940975,0.00024111077,0.01961892,0.28165454],"study_design_scores_gemma":[0.00021110217,0.0004473698,0.000039929862,0.00026191043,0.0001549061,0.0002944021,0.00014562871,6.292753e-8,0.00064929784,0.00006803834,0.9973502,0.0003771469],"about_ca_topic_score_codex":0.00014909565,"about_ca_topic_score_gemma":0.00012103544,"teacher_disagreement_score":0.9777313,"about_ca_system_score_codex":0.000055818713,"about_ca_system_score_gemma":0.000111509726,"threshold_uncertainty_score":0.99987805},"labels":[],"label_agreement":null},{"id":"W2909689379","doi":"10.1128/aem.02534-18","title":"Taxonomic and Functional Compositions of the Small Intestinal Microbiome in Neonatal Calves Provide a Framework for Understanding Early Life Gut Health","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Alberta Innovates; Alberta Innovates - Technology Futures; Alberta Livestock and Meat Agency; Government of Canada","keywords":"Microbiome; Metagenomics; Biology; Gut flora; Gut microbiome; Amplicon sequencing; Zoology; Gut microflora; 16S ribosomal RNA; Bioinformatics; Immunology; Genetics; Bacteria; Gene","score_opus":0.016301779703316602,"score_gpt":0.20577534983617396,"score_spread":0.18947357013285737,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2909689379","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9935822,0.0005263286,0.004563005,0.0003694386,0.00007463687,0.0006309379,0.00023437738,0.000002838918,0.000016243093],"genre_scores_gemma":[0.9964761,0.00007662397,0.002303208,0.000749658,0.00003354128,0.000024403627,0.0002967354,0.000012565549,0.00002717999],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999206,0.000029667648,0.00021675146,0.00030680074,0.000012777149,0.00022799434],"domain_scores_gemma":[0.9996675,0.000039362287,0.000109672634,0.00012732923,0.0000019825875,0.000054138352],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009065075,0.00013011685,0.00018473074,0.00003621024,0.00009825117,0.0000072382454,0.00007092171,0.00013572775,0.0000098596975],"category_scores_gemma":[0.0000036785948,0.00011060853,0.000041524152,0.00002729504,0.00027464645,0.0000024367191,0.00014246152,0.000118931035,0.0000023091666],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015084747,0.000035936955,0.012604209,0.00005674915,0.000021260306,6.356496e-8,0.000116813615,0.000008678728,0.9840684,0.0027422486,0.0000868982,0.00010789573],"study_design_scores_gemma":[0.011000455,0.003283673,0.7879305,0.00040409397,0.00009058758,0.00063385855,0.006884541,0.000068447145,0.16084324,0.008260741,0.019116776,0.001483075],"about_ca_topic_score_codex":0.00003527631,"about_ca_topic_score_gemma":0.00003813089,"teacher_disagreement_score":0.82322514,"about_ca_system_score_codex":0.00005817148,"about_ca_system_score_gemma":0.000056418703,"threshold_uncertainty_score":0.45104852},"labels":[],"label_agreement":null},{"id":"W2910181972","doi":"10.1128/aem.02418-18","title":"Molecular Hydrogen, a Neglected Key Driver of Soil Biogeochemical Processes","year":2019,"lang":"en","type":"review","venue":"Applied and Environmental Microbiology","topic":"Radioactive element chemistry and processing","field":"Chemistry","cited_by":103,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Armand-Frappier Foundation","keywords":"Biogeochemical cycle; Key (lock); Environmental science; Astrobiology; Hydrogen; Environmental chemistry; Chemistry; Biochemical engineering; Computer science; Earth science; Biology; Ecology; Engineering; Geology","score_opus":0.010031353125226595,"score_gpt":0.22013944687123385,"score_spread":0.21010809374600725,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2910181972","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.057461575,0.93939286,0.0000037978764,0.0000026991004,0.000017285005,0.00016705447,0.0007139628,0.0000255922,0.0022151675],"genre_scores_gemma":[0.03456493,0.9603543,0.000056777208,0.000025821726,0.000059631406,0.000059832622,0.004716168,0.000058268797,0.000104237464],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99839294,0.00001723255,0.00048657134,0.00069038576,0.00005925116,0.00035359914],"domain_scores_gemma":[0.9991244,0.000093885756,0.0004094181,0.0002941751,0.000004841796,0.00007325035],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000027699785,0.0005201518,0.0012291594,0.000044382377,0.000053967524,0.000010597062,0.00027542785,0.0006809265,0.00051117834],"category_scores_gemma":[0.000007097629,0.00046522464,0.00017778925,0.00009326785,0.00040677452,0.000026011383,0.00020601775,0.00037528476,0.000035890516],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013065929,0.00009927728,0.000015546686,0.02120568,0.00030851824,0.0000051827724,0.000039562005,8.9940454e-7,0.91825837,0.000005580272,0.00003536396,0.06001298],"study_design_scores_gemma":[0.0002911823,0.000012865937,1.086203e-7,0.0009929992,0.00050468184,0.00013811326,0.00003534685,6.552933e-7,0.5501726,0.00002627538,0.44742325,0.00040190067],"about_ca_topic_score_codex":0.0000022079987,"about_ca_topic_score_gemma":1.6885376e-7,"teacher_disagreement_score":0.44738787,"about_ca_system_score_codex":0.00008216802,"about_ca_system_score_gemma":0.00008407711,"threshold_uncertainty_score":0.99977994},"labels":[],"label_agreement":null},{"id":"W2911108468","doi":"10.1128/aem.00037-19","title":"Effect of Cessation of Ceftiofur and Substitution with Lincomycin-Spectinomycin on Extended-Spectrum-β-Lactamase/AmpC Genes and Multidrug Resistance in Escherichia coli from a Canadian Broiler Production Pyramid","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Montréal","funders":"Agriculture and Agri-Food Canada; Government of Canada","keywords":"Ceftiofur; Lincomycin; Spectinomycin; Cephalosporin; Microbiology; Biology; Antimicrobial; Escherichia coli; Enrofloxacin; Florfenicol; Multiple drug resistance; Antibiotic resistance; Drug resistance; Antibiotics; Veterinary medicine; Medicine; Ciprofloxacin; Gene","score_opus":0.0018082187734311027,"score_gpt":0.16868203392526368,"score_spread":0.16687381515183258,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2911108468","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986127,0.00070941076,0.000008798954,0.000034806963,0.000040276984,0.0003978451,0.000064625936,0.000002511643,0.000129035],"genre_scores_gemma":[0.99884593,0.00056322105,0.00025560285,0.000018975696,0.000022929078,0.0000076642955,0.00023811977,0.000012317011,0.000035247365],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992085,0.000052246196,0.0001680823,0.00039758562,0.000027819824,0.00014578337],"domain_scores_gemma":[0.99966383,0.000019397248,0.00011500466,0.00016329855,0.0000029253765,0.000035561254],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010182888,0.00015134133,0.00021764942,0.000048095324,0.00003371346,0.0000049477385,0.00003704321,0.0001356079,0.000009922537],"category_scores_gemma":[0.0000039830206,0.0001309666,0.000012815738,0.000033580796,0.00026879486,0.0000060124603,0.000028945482,0.000069888476,0.0000013394204],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00067167194,0.000029753588,0.10852933,0.000047274974,0.000022622678,8.3288126e-7,0.00006052436,0.00001292316,0.89021736,0.00009907923,0.000003429874,0.00030517727],"study_design_scores_gemma":[0.000870267,0.00031215153,0.29262045,0.000032253432,0.000013914089,0.000005756293,0.00009105773,0.0000031461352,0.7054561,0.00002564185,0.00045244372,0.00011686461],"about_ca_topic_score_codex":0.0010185085,"about_ca_topic_score_gemma":0.006357615,"teacher_disagreement_score":0.18476133,"about_ca_system_score_codex":0.000038644837,"about_ca_system_score_gemma":0.000017182085,"threshold_uncertainty_score":0.53406626},"labels":[],"label_agreement":null},{"id":"W2911690871","doi":"10.1128/aem.02133-18","title":"The <i>Edwardsiella piscicida</i> Type III Translocon Protein EseC Inhibits Biofilm Formation by Sequestering EseE","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"National Natural Science Foundation of China","keywords":"Biofilm; Microbiology; Translocon; Operon; Biology; Effector; Virulence; Intracellular; Bacteria; Cell biology; Biochemistry; Gene; Escherichia coli; Chromosomal translocation","score_opus":0.0027659493280458875,"score_gpt":0.15989993148881443,"score_spread":0.15713398216076854,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2911690871","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.991834,0.0035610772,0.000054565033,0.00023666552,0.0002407002,0.0011033316,0.00012412964,0.000057422945,0.0027881132],"genre_scores_gemma":[0.99151516,0.00027947297,0.000014500195,0.00047220572,0.000017728913,0.00004824022,0.0017634217,0.000023792725,0.005865502],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998731,0.00007031126,0.000292607,0.00041096218,0.00001923662,0.00047587897],"domain_scores_gemma":[0.99957156,0.000029628212,0.00011613155,0.0002474295,0.0000043628797,0.000030906893],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00014688255,0.00028424384,0.00024961887,0.00003736315,0.0003170413,0.00003362811,0.0002165804,0.00026863613,0.0003010846],"category_scores_gemma":[0.00000136188,0.00020425394,0.000059294485,0.0000606574,0.00036450627,0.00008481537,0.00018447847,0.0002373235,0.0011940522],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018987211,0.00005162273,0.00008256295,0.000026753245,0.00007657675,6.072624e-7,0.00024765063,0.0000014663854,0.9912266,0.00036814695,0.003944188,0.003783916],"study_design_scores_gemma":[0.0015307949,0.00013535625,0.00006296329,0.00001277049,0.00003519253,0.000040840383,0.00073103036,0.0000019755196,0.68157315,0.00004218345,0.31556636,0.00026740012],"about_ca_topic_score_codex":0.000015964997,"about_ca_topic_score_gemma":0.000008054643,"teacher_disagreement_score":0.31162217,"about_ca_system_score_codex":0.00004935101,"about_ca_system_score_gemma":0.000008445968,"threshold_uncertainty_score":0.99958366},"labels":[],"label_agreement":null},{"id":"W2917264857","doi":"10.1128/aem.02941-18","title":"Recovery of Fungal Cells from Air Samples: a Tale of Loss and Gain","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Indoor Air Quality and Microbial Exposure","field":"Environmental Science","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency; Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec","funders":"Institut de Recherche Robert-Sauvé en Santé et en Sécurité du Travail","keywords":"Filtration (mathematics); Fungal Diversity; Spore; Biology; Aerosol; Centrifugation; Extraction (chemistry); Chromatography; Botany; Chemistry; Biochemistry","score_opus":0.003931363759223298,"score_gpt":0.16493821569167547,"score_spread":0.16100685193245218,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2917264857","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99786085,0.00012325861,0.000056087156,0.00002459011,0.00006841646,0.00022859988,0.0006407707,0.000005851057,0.0009915872],"genre_scores_gemma":[0.9985339,0.00016493979,0.0006870606,0.0002719673,0.000012194415,0.0000035458447,0.00013883517,0.000011238735,0.00017633007],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99909997,0.00004232454,0.00026749115,0.00034732828,0.000040605624,0.00020230691],"domain_scores_gemma":[0.99955934,0.00008149416,0.00013047403,0.00018250804,5.6994605e-7,0.000045617177],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00011824826,0.00015248152,0.00030222355,0.000019521329,0.000036754485,0.000002570547,0.000109607376,0.0001560879,0.0013070526],"category_scores_gemma":[0.0000012730981,0.00014337845,0.00004478948,0.000031679334,0.00070351706,0.000047837104,0.0002737821,0.00009844814,0.00014144545],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008552599,0.000086078566,0.021044053,0.000019967287,0.000024330988,9.417599e-7,0.00048132095,0.000074150186,0.9757718,0.00006889902,0.00018500024,0.0021579547],"study_design_scores_gemma":[0.001239149,0.00028545686,0.03039261,0.000016316564,0.00003038218,0.000028100834,0.00092426786,0.0000069993603,0.9585016,0.0005493795,0.0077430266,0.00028275148],"about_ca_topic_score_codex":0.00036182028,"about_ca_topic_score_gemma":0.000028681285,"teacher_disagreement_score":0.017270217,"about_ca_system_score_codex":0.00003334799,"about_ca_system_score_gemma":0.0000035317478,"threshold_uncertainty_score":0.9996059},"labels":[],"label_agreement":null},{"id":"W2920015306","doi":"10.1128/aem.02426-18","title":"Effects of Absolute Humidity, Relative Humidity, Temperature, and Wind Speed on Influenza Activity in Toronto, Ontario, Canada","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":139,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Sunnybrook Hospital; University of Toronto; Public Health Ontario","funders":"","keywords":"Relative humidity; Humidity; Temperate climate; Virus; Outbreak; Seasonality; Seasonal influenza; Virology; Influenza A virus; Transmission (telecommunications); Orthomyxoviridae; Human influenza; Biology; Atmospheric sciences; Geography; Meteorology; Ecology; Medicine; Coronavirus disease 2019 (COVID-19); Infectious disease (medical specialty); Disease","score_opus":0.010390422739226366,"score_gpt":0.2466093416025013,"score_spread":0.23621891886327495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2920015306","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99547803,0.0007935135,5.33497e-8,0.00003451307,0.000075678516,0.00078614557,0.000050028746,0.0000050738877,0.002776954],"genre_scores_gemma":[0.9987041,0.00026081136,0.000018390923,0.00057468546,0.000020002131,0.00000560455,0.0000264922,0.000013423738,0.00037651818],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989982,0.00004583776,0.00018318623,0.0003691572,0.00009011703,0.00031344904],"domain_scores_gemma":[0.9994656,0.00022217889,0.00007040295,0.00015840614,0.000003764125,0.00007968098],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010479493,0.00021286492,0.00046817143,0.00004027617,0.000058116762,0.000004141381,0.000054105374,0.00016394131,0.0001909474],"category_scores_gemma":[0.000012607259,0.00018091442,0.00002627585,0.000029089448,0.00028778487,0.00005474453,0.00022178149,0.00036485228,0.000009584203],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005304515,0.00013903737,0.057913616,0.0001268342,0.000109415174,0.000014811102,0.00040921176,0.0000051088705,0.9402314,0.00006071024,0.00018458195,0.00027485017],"study_design_scores_gemma":[0.0030426502,0.00046765263,0.8142637,0.000054082084,0.000030011717,0.000014987587,0.00019007147,0.000001153492,0.17813194,0.000028513909,0.0036038486,0.00017136593],"about_ca_topic_score_codex":0.4997192,"about_ca_topic_score_gemma":0.51075566,"teacher_disagreement_score":0.76209944,"about_ca_system_score_codex":0.0009469339,"about_ca_system_score_gemma":0.00008929121,"threshold_uncertainty_score":0.73774755},"labels":[],"label_agreement":null},{"id":"W2923249399","doi":"10.1128/aem.00139-19","title":"Clinically Unreported Salmonellosis Outbreak Detected via Comparative Genomic Analysis of Municipal Wastewater <i>Salmonella</i> Isolates","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ministry of Science,Technology and Research; National Science Foundation of Sri Lanka; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Outbreak; Public health; Salmonella; Wastewater; Environmental health; Infectious disease (medical specialty); Biology; Geography; Veterinary medicine; Disease; Medicine; Virology; Environmental science; Bacteria; Environmental engineering","score_opus":0.013864243289060428,"score_gpt":0.2113293492711164,"score_spread":0.19746510598205597,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2923249399","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987135,0.0002290789,0.0000046914906,0.00004736217,0.0000758023,0.00030949988,0.00019440938,0.000031265292,0.0003944047],"genre_scores_gemma":[0.9980855,0.00016712527,0.00008175667,0.00029725028,0.000032792603,0.000014808526,0.0012311446,0.0000029390264,0.00008666529],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9979435,0.0001586171,0.0007745328,0.00065989443,0.000042965738,0.0004204482],"domain_scores_gemma":[0.9989179,0.00043185856,0.00037048367,0.0001657806,0.000007038092,0.000106969805],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025012685,0.00029554844,0.00094323425,0.000047480273,0.00008013908,0.000009142749,0.00024811356,0.00031273067,0.00080597564],"category_scores_gemma":[0.0000030338401,0.00013965258,0.00022913578,0.0002328221,0.0003628284,0.000030916948,0.00025981248,0.00017925967,0.00012707117],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014196242,0.000108598135,0.20297563,0.0000028481577,0.0005174845,0.0000010477038,0.00018403436,0.00007752737,0.7951085,0.0000065536165,0.000012235686,0.000863572],"study_design_scores_gemma":[0.0005929236,0.000683353,0.92078596,0.000005213262,0.00068408495,0.00004352191,0.0012750011,0.0006593002,0.07305401,0.00012525418,0.0015742212,0.0005171691],"about_ca_topic_score_codex":0.00024198837,"about_ca_topic_score_gemma":0.00008245856,"teacher_disagreement_score":0.7220545,"about_ca_system_score_codex":0.000027867136,"about_ca_system_score_gemma":0.0000025442444,"threshold_uncertainty_score":0.8824868},"labels":[],"label_agreement":null},{"id":"W2923496841","doi":"10.1128/aem.03130-18","title":"Composition and Origin of the Fermentation Microbiota of Mahewu, a Zimbabwean Fermented Cereal Beverage","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Innovates; Alberta Innovates Bio Solutions; Canada Research Chairs; Government of Canada; Schlumberger Foundation","keywords":"Fermentation; Starter; Biology; Enterobacteriaceae; Food science; Microbiome; Fermentation starter; Composition (language); Bacteria; Gut flora; Amplicon sequencing; 16S ribosomal RNA; Microbiology; Biotechnology; Genetics; Biochemistry; Escherichia coli; Gene; Lactic acid","score_opus":0.003981304824246798,"score_gpt":0.1571711019168632,"score_spread":0.1531897970926164,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2923496841","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99890405,0.000069256246,0.0000010234758,0.00010717185,0.00004880477,0.00031321574,0.00024501333,0.000004794242,0.00030668534],"genre_scores_gemma":[0.99936026,0.00009306464,0.00004094165,0.00012220062,0.000010303685,0.000003062242,0.0003002951,0.0000011512501,0.00006873927],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994221,0.000029733414,0.00018322196,0.00020131076,0.00003076847,0.00013286267],"domain_scores_gemma":[0.9997836,0.000021094513,0.00011617723,0.000051402658,0.0000024778624,0.00002530084],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000053708,0.00010834008,0.00016399036,0.000008599908,0.000062822764,0.000005661041,0.00009158456,0.00008791282,0.00010868866],"category_scores_gemma":[2.8830436e-7,0.00004559461,0.000035808214,0.00004795564,0.00020291327,0.000020266501,0.00013808787,0.00006687209,0.0000045656716],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041575488,0.00008832688,0.018317249,0.000012658955,0.000019834019,8.6699735e-8,0.00006439715,0.0000027895626,0.9794747,0.00035922707,0.000013074345,0.0016060417],"study_design_scores_gemma":[0.00081302365,0.00031013731,0.5446718,0.000024269744,0.000027226028,0.00003286958,0.00044904253,0.000021162321,0.4524931,0.0001663315,0.0008230802,0.00016797784],"about_ca_topic_score_codex":0.000039065206,"about_ca_topic_score_gemma":0.0000056169906,"teacher_disagreement_score":0.52698165,"about_ca_system_score_codex":0.00001753723,"about_ca_system_score_gemma":0.0000017349663,"threshold_uncertainty_score":0.18592943},"labels":[],"label_agreement":null},{"id":"W2938891260","doi":"10.1128/aem.02206-18","title":"The Blue-Light Photoreceptor <i>Sfwc-1</i> Gene Regulates the Phototropic Response and Fruiting-Body Development in the Homothallic Ascomycete <i>Sordaria fimicola</i>","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Light effects on plants","field":"Agricultural and Biological Sciences","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Taiwan University; Beef Cattle Research Council","keywords":"Biology; Phototropism; Homothallism; Mutant; Botany; Neurospora crassa; Gene; Cell biology; Genetics; Mating type; Blue light","score_opus":0.002854733395935516,"score_gpt":0.1456192807511106,"score_spread":0.1427645473551751,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2938891260","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968124,0.00070000737,8.90772e-8,0.0014026781,0.00008907008,0.0007991016,0.000048930346,0.000014491988,0.00013321663],"genre_scores_gemma":[0.99790317,0.0002917494,0.00001975829,0.0013309356,0.00004761237,0.00009632031,0.00009881227,0.0000028296067,0.00020878515],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99862623,0.0002659834,0.0002355667,0.00040062846,0.000075508535,0.00039608515],"domain_scores_gemma":[0.99883485,0.000892011,0.00009513312,0.00013347068,0.000002092021,0.000042471296],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006014837,0.00022602458,0.00019675939,0.000008857043,0.0004889763,0.00008586053,0.000400286,0.00012765948,0.000075649965],"category_scores_gemma":[0.0000065376034,0.00006514842,0.000032940177,0.00007817298,0.0002802153,0.000035543,0.00022841808,0.00020490367,0.0000807708],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001612913,0.00004057315,0.0049491306,0.0000028407608,0.000018842211,0.0000020298799,0.00041603274,3.7687582e-7,0.99201435,0.000043185573,0.00028584313,0.0020654837],"study_design_scores_gemma":[0.00057759933,0.00020158655,0.21996245,0.000011125979,0.000013023018,0.00012109599,0.0009373507,0.000004448295,0.51787627,0.00006170992,0.25996372,0.00026964198],"about_ca_topic_score_codex":0.000030026833,"about_ca_topic_score_gemma":0.000094585615,"teacher_disagreement_score":0.4741381,"about_ca_system_score_codex":0.000035203968,"about_ca_system_score_gemma":0.000006015905,"threshold_uncertainty_score":0.37608597},"labels":[],"label_agreement":null},{"id":"W2940222844","doi":"10.1128/aem.00111-19","title":"Spiked Virus Level Needed To Correctly Assess Enteric Virus Recovery in Water Matrices","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Innovates; Government of Canada","keywords":"Enteric virus; Wastewater; Virus; Virus inactivation; Log reduction; Reuse; Matrix (chemical analysis); Biological system; Biochemical engineering; Environmental science; Computer science; Biology; Virology; Chemistry; Chromatography; Environmental engineering; Microbiology; Ecology; Engineering","score_opus":0.018714214202284394,"score_gpt":0.246006693951796,"score_spread":0.2272924797495116,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2940222844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99793845,0.00012285842,0.000085239,0.00047102867,0.00018235228,0.00061802135,0.00011155566,0.0000178683,0.0004526022],"genre_scores_gemma":[0.9932123,0.00055837794,0.00045765596,0.0045620026,0.000051506646,0.000056627276,0.0004900958,0.000023437398,0.00058799016],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984139,0.00007441412,0.00032628432,0.0004834609,0.00004844595,0.0006535009],"domain_scores_gemma":[0.99958163,0.000026905285,0.000038981863,0.0001769397,0.0000023228613,0.00017324403],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00020214712,0.0002145961,0.00051538507,0.00017375982,0.00003608316,0.00001107491,0.00010329294,0.0001649415,0.00081685657],"category_scores_gemma":[0.000007634351,0.0001630663,0.000058927675,0.00005575853,0.0001245992,0.000044698405,0.00025223126,0.00024297634,0.0012027055],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009640804,0.00014410283,0.02836444,0.000028198241,0.00003195039,0.000029106,0.000080614955,0.000009303955,0.96546626,0.0000031384527,0.0010517912,0.0038270291],"study_design_scores_gemma":[0.010840024,0.0054153777,0.32883713,0.00013650955,0.00006597556,0.0015693632,0.0021092289,0.00006947596,0.58999825,0.00012946794,0.05989511,0.00093406637],"about_ca_topic_score_codex":0.00039814573,"about_ca_topic_score_gemma":0.000073268304,"teacher_disagreement_score":0.37546796,"about_ca_system_score_codex":0.0001262742,"about_ca_system_score_gemma":0.000008419783,"threshold_uncertainty_score":0.99957496},"labels":[],"label_agreement":null},{"id":"W2942813007","doi":"10.1128/aem.00086-19","title":"Potential for Microbially Mediated Natural Attenuation of Diluted Bitumen on the Coast of British Columbia (Canada)","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Fisheries and Oceans Canada; National Research Council Canada","funders":"University of Waterloo","keywords":"Dispersant; Microcosm; Petroleum; Environmental science; Environmental chemistry; Chemistry; Dispersion (optics)","score_opus":0.002169040916252725,"score_gpt":0.14172013061199223,"score_spread":0.1395510896957395,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2942813007","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976872,0.000015754857,0.000007024584,0.00012618823,0.00015237942,0.0005949285,0.0012829638,0.0000050324747,0.00012852577],"genre_scores_gemma":[0.9984134,0.000028340828,0.00008902587,0.0006091964,0.000012097014,0.0000065925233,0.0005609343,0.000010449328,0.00027000252],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99915075,0.000031125885,0.00027350252,0.00026765995,0.00008115779,0.00019578244],"domain_scores_gemma":[0.99955755,0.00008387957,0.00019189788,0.00012993506,0.0000029444839,0.000033762444],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00012476953,0.00010210127,0.00020311624,0.000009675695,0.000058544243,0.000009621995,0.00015352636,0.00009287642,0.0011044317],"category_scores_gemma":[0.000005906737,0.00010554302,0.000041381867,0.000052107174,0.00030816297,0.000023168148,0.000112745605,0.000080039266,0.000029011844],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046211662,0.000057301804,0.014278364,0.000008528018,0.000020772764,3.044955e-7,0.000029333643,0.000014832331,0.9787606,0.0000050173753,0.0060572936,0.00072142214],"study_design_scores_gemma":[0.0043960656,0.0004926168,0.6165677,0.000040586925,0.00007295369,0.000051019375,0.0008755383,0.00019404576,0.35956943,0.00007607036,0.016990062,0.00067397277],"about_ca_topic_score_codex":0.029489497,"about_ca_topic_score_gemma":0.14670157,"teacher_disagreement_score":0.61919117,"about_ca_system_score_codex":0.00006745211,"about_ca_system_score_gemma":0.000015863501,"threshold_uncertainty_score":0.99980867},"labels":[],"label_agreement":null},{"id":"W2943125375","doi":"10.1128/aem.00247-19","title":"Nitrate Consumers in Arctic Marine Eukaryotic Communities: Comparative Diversities of 18S rRNA, 18S rRNA Genes, and Nitrate Reductase Genes","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria; Université Laval","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; Government of Canada; University of Victoria","keywords":"18S ribosomal RNA; Nitrate reductase; Gene; Biology; Ribosomal RNA; Genetics; Nitrate; Computational biology; Ecology","score_opus":0.008955568331738247,"score_gpt":0.18494873727778044,"score_spread":0.1759931689460422,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2943125375","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968988,0.00045216485,0.0000016099464,0.000048372185,0.000072215815,0.00038566123,0.00013313565,0.000010233679,0.0019978646],"genre_scores_gemma":[0.9973738,0.0012908202,0.00020180298,0.00036237345,0.0000068083114,0.00001283267,0.00058088615,0.000012798795,0.00015785458],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986996,0.0002690811,0.00031554763,0.00030915008,0.00003472829,0.0003718607],"domain_scores_gemma":[0.99931145,0.0001759272,0.0001494814,0.0002894959,0.0000019848344,0.0000716816],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002059343,0.0002772802,0.00050658145,0.000071193565,0.0001977566,0.000008328111,0.0002651438,0.0001872482,0.0037633462],"category_scores_gemma":[7.4926373e-7,0.00027695016,0.0000392894,0.00007278051,0.002253908,0.00008605408,0.00091913226,0.00035241127,0.00019409166],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014428156,0.00014385155,0.28135887,0.00003557262,0.000057587476,0.0000031915092,0.0015712951,0.00017140583,0.71577036,0.00010883733,0.000082616745,0.00055214687],"study_design_scores_gemma":[0.0046486654,0.00123308,0.8350678,0.00006697968,0.00018893406,0.00040289667,0.030767927,0.00018085238,0.11825288,0.002727371,0.004884662,0.0015779475],"about_ca_topic_score_codex":0.0028696486,"about_ca_topic_score_gemma":0.0020621489,"teacher_disagreement_score":0.5975175,"about_ca_system_score_codex":0.000095601965,"about_ca_system_score_gemma":0.00000947227,"threshold_uncertainty_score":0.9999683},"labels":[],"label_agreement":null},{"id":"W2943513048","doi":"10.1128/aem.00066-19","title":"Next Generation of Tn <i>7</i> -Based Single-Copy Insertion Elements for Use in Multi- and Pan-Drug-Resistant Strains of Acinetobacter baumannii","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Regina; University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Acinetobacter baumannii; Biology; Plasmid; Recombinase; Gene cassette; Multiple drug resistance; Genetics; Gene; Microbiology; Drug resistance; Bacteria; Recombination; Integron; Pseudomonas aeruginosa","score_opus":0.02358177672075659,"score_gpt":0.21523005788340435,"score_spread":0.19164828116264776,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2943513048","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988585,0.00013430978,0.00030949924,0.000008811931,0.000043726122,0.00042109628,0.00021386333,0.000001574871,0.000008591195],"genre_scores_gemma":[0.99494296,0.0000888918,0.0035758445,0.00009813184,0.00001623237,0.00000939479,0.0012149503,0.0000133392,0.000040277522],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99924856,0.000024047698,0.0002784101,0.00028577234,0.00002046602,0.00014275979],"domain_scores_gemma":[0.99968505,0.000012454794,0.0001350547,0.00014292744,0.000004517054,0.000020001788],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007425832,0.00012491508,0.00018375818,0.000031379266,0.000017583508,0.000006263693,0.000049483435,0.00011985912,0.000009066052],"category_scores_gemma":[0.0000033843771,0.00011965181,0.000027535036,0.00001582553,0.00014755406,0.0000065549016,0.000043993186,0.000031403706,7.451561e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022937082,0.00013417925,0.08880655,0.00004451263,0.000018685638,1.16735436e-7,0.000022760674,0.0000101873065,0.9102917,0.000011855372,0.00002779001,0.00040234945],"study_design_scores_gemma":[0.001997519,0.00028782,0.12200671,0.000014503322,0.000013300542,0.000001406074,0.00011167754,0.00007865058,0.874503,0.0000031855354,0.0008519001,0.0001302843],"about_ca_topic_score_codex":0.000013848873,"about_ca_topic_score_gemma":0.0000953584,"teacher_disagreement_score":0.0357886,"about_ca_system_score_codex":0.000015885247,"about_ca_system_score_gemma":0.000008144956,"threshold_uncertainty_score":0.48792595},"labels":[],"label_agreement":null},{"id":"W2950851589","doi":"10.1128/aem.02020-17","title":"Genome Sequencing Links Persistent Outbreak of Legionellosis in Sydney (New South Wales, Australia) to an Emerging Clone of Legionella pneumophila Sequence Type 211","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"NSW Health Pathology","keywords":"Legionella pneumophila; Outbreak; Legionella; Legionnaires' disease; Whole genome sequencing; Biology; clone (Java method); Sequence (biology); Type (biology); Virology; Genome; Genetics; Microbiology; Ecology; Gene; Bacteria","score_opus":0.047857378483292315,"score_gpt":0.2785279211529792,"score_spread":0.2306705426696869,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2950851589","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990715,0.00021426653,0.00002141987,0.0001687819,0.00005442573,0.0002315318,0.000077688615,0.0000030559206,0.00015734874],"genre_scores_gemma":[0.9985155,0.0003737557,0.00029037768,0.00010116698,0.00008285108,0.0000069031153,0.00026156308,0.000020042977,0.00034785492],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99877954,0.000032827294,0.0002963267,0.0004922966,0.00006204603,0.0003369852],"domain_scores_gemma":[0.9991824,0.00000611717,0.00016030807,0.00048560867,0.000009594654,0.00015594465],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015474707,0.00019283376,0.00029390972,0.000077515026,0.000115488256,0.000013208141,0.00034881933,0.00029354487,0.000011263446],"category_scores_gemma":[0.000008737098,0.0001895445,0.00007096394,0.00003875262,0.00041577677,0.000008029927,0.00035886277,0.00017860335,0.000010690087],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012353963,0.00005546554,0.011747194,0.000028352817,0.000044716082,0.00000511782,0.00060477376,0.0001931032,0.98681366,0.00003362007,0.000023142959,0.00032729373],"study_design_scores_gemma":[0.0012796182,0.0009234521,0.027466774,0.000046300633,0.00004776258,0.00009260482,0.002227729,0.00002008342,0.9647122,0.00005199492,0.0026259401,0.000505545],"about_ca_topic_score_codex":0.00044153145,"about_ca_topic_score_gemma":0.000045904908,"teacher_disagreement_score":0.022101484,"about_ca_system_score_codex":0.000047402562,"about_ca_system_score_gemma":0.000047515954,"threshold_uncertainty_score":0.77294004},"labels":[],"label_agreement":null},{"id":"W2954516475","doi":"10.1128/aem.01123-19","title":"Facultative Anaerobes Shape Multispecies Biofilms Composed of Meat Processing Surface Bacteria and Escherichia coli O157:H7 or Salmonella enterica Serovar Typhimurium","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Government of Canada","keywords":"Salmonella enterica; Microbiology; Serotype; Escherichia coli; Biology; Bacteria; Salmonella; Biofilm; Enterobacteriaceae; Facultative; Enteric bacteria; Gene; Genetics","score_opus":0.0064420939263490785,"score_gpt":0.1943211869141912,"score_spread":0.1878790929878421,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2954516475","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988062,0.00040069237,0.000008318453,0.000033046534,0.000080753074,0.00030951717,0.00021668203,0.000009461194,0.00013536907],"genre_scores_gemma":[0.99504864,0.00050055207,0.0034152977,0.00017128648,0.0000373259,0.0000028582888,0.0005984358,0.000026915794,0.00019867303],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989051,0.000043547036,0.0002542903,0.00048743383,0.000032077733,0.00027755703],"domain_scores_gemma":[0.9996138,0.000016491816,0.00015028409,0.00014466554,0.000007871424,0.000066859975],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005547716,0.00026556558,0.000352484,0.000021877384,0.00008309402,0.000022274904,0.00008976228,0.00022289797,0.000100086865],"category_scores_gemma":[0.0000024365795,0.00021585824,0.000038315215,0.000040796065,0.0004188976,0.000007548786,0.00022376819,0.000082772334,0.000011426012],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046004582,0.00007024259,0.0031063254,0.000046997087,0.000062287836,0.0000011826204,0.00020375487,0.0000043051673,0.9948981,0.0000089666655,0.000043021686,0.0010948122],"study_design_scores_gemma":[0.0011775582,0.00042243174,0.017881136,0.000019134613,0.000025863368,0.00003363927,0.0008471382,0.000045952595,0.97349286,0.0000012640527,0.005753423,0.00029962108],"about_ca_topic_score_codex":0.000019122532,"about_ca_topic_score_gemma":0.000009956708,"teacher_disagreement_score":0.02140522,"about_ca_system_score_codex":0.000010731777,"about_ca_system_score_gemma":0.000013627706,"threshold_uncertainty_score":0.8802444},"labels":[],"label_agreement":null},{"id":"W2954843486","doi":"10.1128/aem.00402-19","title":"<i>Bacillus subtilis</i> Strain DSM 29784 Modulates the Cecal Microbiome, Concentration of Short-Chain Fatty Acids, and Apparent Retention of Dietary Components in Shaver White Chickens during Grower, Developer, and Laying Phases","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Animal Nutrition and Physiology","field":"Agricultural and Biological Sciences","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Ontario Agri-Food Innovation Alliance; Adisseo France","keywords":"Bacillus subtilis; Strain (injury); Food science; Microbiome; Biology; Bacterial strain; Fatty acid; Chemistry; Biochemistry; Microbiology; Bacteria; Anatomy; Bioinformatics","score_opus":0.01489567677500103,"score_gpt":0.17592210245478565,"score_spread":0.16102642567978462,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2954843486","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987651,0.0004939119,9.901026e-7,0.00008829292,0.000027383543,0.00029298267,0.00030018805,0.000005210692,0.000025940699],"genre_scores_gemma":[0.9983711,0.0007507264,0.000033597385,0.00008495871,0.000012971018,0.0000062705744,0.0007313043,0.0000014344715,0.0000076288848],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99921346,0.000053243682,0.00025111792,0.0002771807,0.000029997296,0.0001750024],"domain_scores_gemma":[0.9998044,0.000045995752,0.00007750322,0.000036509937,0.0000032690573,0.000032316857],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008113512,0.00013647287,0.0002334521,0.000010278568,0.000076663564,0.0000062526906,0.000063266016,0.000107580076,0.000060476512],"category_scores_gemma":[0.0000010042224,0.000065649605,0.000027998482,0.000045904515,0.00037270997,0.00004201997,0.00010738999,0.00008766303,0.0000010526942],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011212399,0.000077559154,0.12899151,0.000021389802,0.000012104523,4.051745e-7,0.00012973831,0.000003542715,0.8694325,0.000026309453,0.0000038734024,0.0011889171],"study_design_scores_gemma":[0.00059208256,0.00016000042,0.9628524,0.000022859294,0.000009224523,0.000023076023,0.0010451465,0.000033279975,0.034916937,0.00007258123,0.00014122954,0.00013118895],"about_ca_topic_score_codex":0.000028405944,"about_ca_topic_score_gemma":0.000026784424,"teacher_disagreement_score":0.8345156,"about_ca_system_score_codex":0.000011884377,"about_ca_system_score_gemma":0.0000012252954,"threshold_uncertainty_score":0.2677113},"labels":[],"label_agreement":null},{"id":"W2962703011","doi":"10.1128/aem.00383-19","title":"Plantibacter flavus, Curtobacterium herbarum, Paenibacillus taichungensis, and Rhizobium selenitireducens Endophytes Provide Host-Specific Growth Promotion of Arabidopsis thaliana, Basil, Lettuce, and Bok Choy Plants","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"The Scarborough Hospital; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biofertilizer; Biology; Rhizobium; Bacteria; Rhizobacteria; Plant growth; Botany; Microbial inoculant; Paenibacillus polymyxa; Pseudomonas; Rhizosphere","score_opus":0.006211398008159363,"score_gpt":0.1572796126543876,"score_spread":0.15106821464622824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2962703011","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996965,0.0005984622,5.5585224e-7,0.0003679448,0.00013364143,0.00042690698,0.0012552188,0.00002091765,0.00023135418],"genre_scores_gemma":[0.9961581,0.0026033665,0.00006784605,0.00024205257,0.000052846983,0.0000150262185,0.0007646427,0.000003813,0.00009228399],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988126,0.00005760319,0.00027741998,0.0004698949,0.000052998897,0.00032949095],"domain_scores_gemma":[0.9995781,0.00010098342,0.00014907535,0.00008139418,0.000008689437,0.00008173725],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009118358,0.0002640788,0.00035008276,0.000027168497,0.0001536275,0.000037794445,0.00010690155,0.00015946776,0.0002092509],"category_scores_gemma":[0.0000027016881,0.00013841754,0.000043335167,0.000045729837,0.00025180713,0.00012601279,0.00014977987,0.00018873188,0.000038906674],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001016631,0.00013759428,0.025612297,0.000022501139,0.000042005515,0.0000023175594,0.000093256516,4.506719e-8,0.9686112,0.000027046559,0.0005112986,0.004838806],"study_design_scores_gemma":[0.00059970823,0.0004698889,0.569225,0.00004765065,0.000028304878,0.0005933015,0.0007021733,0.0000024114472,0.38691616,0.000032070915,0.040966704,0.00041659587],"about_ca_topic_score_codex":0.00019260807,"about_ca_topic_score_gemma":0.000058352256,"teacher_disagreement_score":0.581695,"about_ca_system_score_codex":0.000029522318,"about_ca_system_score_gemma":0.0000037030625,"threshold_uncertainty_score":0.5644504},"labels":[],"label_agreement":null},{"id":"W2964596366","doi":"10.1128/aem.01596-19","title":"The Copy Number of the <i>spoVA</i> <sup>2mob</sup> Operon Determines Pressure Resistance of <i>Bacillus</i> Endospores","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"China Scholarship Council; Canada Research Chairs","keywords":"Endospore; Operon; Bacillus (shape); Bacillaceae; Microbiology; Bacillales; Biology; Bacteria; Genetics; Bacillus subtilis; Spore; Gene; Escherichia coli","score_opus":0.0019998327268838266,"score_gpt":0.17420957239691193,"score_spread":0.1722097396700281,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2964596366","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99682736,0.0012556578,0.000007354672,0.000054938668,0.00007979935,0.0003204446,0.00019769842,0.0000027824751,0.0012539369],"genre_scores_gemma":[0.9964832,0.0008739186,0.00016155395,0.00013441438,0.00003675219,0.000008027639,0.00008449601,0.000018423125,0.0021992072],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990732,0.00005109338,0.00028109126,0.00032084627,0.000051136605,0.0002226143],"domain_scores_gemma":[0.99923456,0.000038907485,0.00018739994,0.0005080163,0.0000061744663,0.000024973817],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000105211875,0.00017536637,0.00022420457,0.000006094201,0.00008642926,0.000006852768,0.00034112544,0.00016639821,0.000043776],"category_scores_gemma":[0.000005838628,0.00010804489,0.00007496024,0.000028572507,0.0008277456,0.0000031531697,0.00028299168,0.00008050831,0.000010173856],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019165299,0.00003088455,0.0819961,0.000036966994,0.000059690363,1.8507721e-7,0.000047451023,0.000016947135,0.9164999,0.00017260402,0.0007772909,0.00017030757],"study_design_scores_gemma":[0.0006265349,0.000057676527,0.01433405,0.000019692523,0.000034936606,0.000023610693,0.00030817333,0.0000021360665,0.85265803,0.00006293136,0.13171414,0.0001580877],"about_ca_topic_score_codex":0.0000065006852,"about_ca_topic_score_gemma":0.000010290189,"teacher_disagreement_score":0.13093685,"about_ca_system_score_codex":0.00000688429,"about_ca_system_score_gemma":0.000013569331,"threshold_uncertainty_score":0.4405943},"labels":[],"label_agreement":null},{"id":"W2966005879","doi":"10.1128/aem.01107-19","title":"Ethanol Adaptation Strategies in Salmonella enterica Serovar Enteritidis Revealed by Global Proteomic and Mutagenic Analyses","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Key Research and Development Program of China","keywords":"Salmonella enterica; Biology; Salmonella enteritidis; Adaptation (eye); Virulence; Microbiology; Salmonella; Pathogen; Bacteria; Genetics; Gene","score_opus":0.01257470010742271,"score_gpt":0.21872871970178984,"score_spread":0.20615401959436713,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2966005879","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983389,0.0006157791,0.000007823637,0.00015416472,0.000035105793,0.00037384595,0.00018395115,0.00001886791,0.00027158423],"genre_scores_gemma":[0.9983794,0.0005842861,0.000091023656,0.00032270228,0.000023183751,0.000032296703,0.0005242075,0.0000015544349,0.000041334668],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988356,0.000110537054,0.00025240285,0.00047374636,0.00002824257,0.00029947492],"domain_scores_gemma":[0.99973714,0.000061092185,0.00008880483,0.00005337929,0.0000014382367,0.00005812425],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010239913,0.00019495185,0.00030995504,0.000010207264,0.000050921084,0.000021263057,0.000101778714,0.0001748714,0.00019137548],"category_scores_gemma":[0.000001810551,0.00009858566,0.00003774303,0.000067180874,0.00016534088,0.00005790649,0.00010840139,0.00009745392,0.000044489392],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000061322964,0.000046188085,0.087727584,0.000006512322,0.00001586584,0.0000015798494,0.000057194622,0.0000036037416,0.90773326,0.000028521088,0.000040704916,0.0042776796],"study_design_scores_gemma":[0.0011222525,0.00060769287,0.9705634,0.000019445077,0.000031687225,0.00015969621,0.0040625087,0.00007518443,0.01954033,0.00091741653,0.0023637887,0.00053659896],"about_ca_topic_score_codex":0.00023880432,"about_ca_topic_score_gemma":0.00005895835,"teacher_disagreement_score":0.8881929,"about_ca_system_score_codex":0.00004029309,"about_ca_system_score_gemma":0.0000028440231,"threshold_uncertainty_score":0.40202066},"labels":[],"label_agreement":null},{"id":"W2966163101","doi":"10.1128/aem.01292-19","title":"The ADEP Biosynthetic Gene Cluster in Streptomyces hawaiiensis NRRL 15010 Reveals an Accessory <i>clpP</i> Gene as a Novel Antibiotic Resistance Factor","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Deutsche Forschungsgemeinschaft; Government of Canada; Canadian Institutes of Health Research; Deutsches Zentrum für Infektionsforschung","keywords":"Gene cluster; Streptomyces; Biology; Gene; Antibiotic resistance; Bacteria; Microbiology; Protease; Antibiotics; Antimicrobial; Genetics; Computational biology; Biochemistry; Enzyme","score_opus":0.006439763504845657,"score_gpt":0.20454028299797,"score_spread":0.19810051949312435,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2966163101","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99522525,0.001983647,0.0000017745075,0.0012696139,0.00018180939,0.0008343744,0.0001813129,0.000024892319,0.00029732074],"genre_scores_gemma":[0.9953241,0.0012062365,0.000462855,0.0016892545,0.000111634625,0.000002979339,0.00017812473,0.00003585489,0.0009889689],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99819654,0.00006123117,0.0003941152,0.0007704182,0.000075603246,0.00050206436],"domain_scores_gemma":[0.9991112,0.00011810715,0.00014571997,0.0005050146,0.000007103375,0.00011289679],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021035726,0.0003199614,0.00046672247,0.000077476274,0.00015265142,0.000036100042,0.00021419009,0.0002721247,0.00018565678],"category_scores_gemma":[0.000015045244,0.00020887831,0.00007059519,0.00009860076,0.00041812804,0.00006629343,0.00018369494,0.00029332595,0.00021123933],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035657646,0.00018514952,0.004966159,0.000043962475,0.000056220248,0.000005967832,0.00011570656,0.0000010726573,0.99202,0.00005063137,0.0001453669,0.0020531912],"study_design_scores_gemma":[0.0017726393,0.000210749,0.03483179,0.000059622074,0.00007412561,0.00017656459,0.0003330683,0.0000045663405,0.9474249,0.0000576304,0.014651869,0.0004025131],"about_ca_topic_score_codex":0.000035528676,"about_ca_topic_score_gemma":0.00005084336,"teacher_disagreement_score":0.04459513,"about_ca_system_score_codex":0.00009404823,"about_ca_system_score_gemma":0.000021626336,"threshold_uncertainty_score":0.851781},"labels":[],"label_agreement":null},{"id":"W2966433127","doi":"10.1128/aem.00800-19","title":"Putative Adhesion Factors in Vaginal Lactobacillus gasseri DSM 14869: Functional Characterization","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Agriculture","funders":"Stiftelsen Läkare mot AIDS Forskningsfond; China Scholarship Council; Vetenskapsrådet","keywords":"Lactobacillus gasseri; Lactobacillus; Adhesion; Microbiology; Biology; Lactobacillus crispatus; Computational biology; Bacteria; Genetics; Chemistry","score_opus":0.008729733716645328,"score_gpt":0.2032554347887615,"score_spread":0.1945257010721162,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2966433127","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981051,0.00015329238,0.00006886807,0.00006119318,0.0003517753,0.00046311287,0.00013367666,0.000028945611,0.0006340282],"genre_scores_gemma":[0.9948169,0.00010622134,0.000014815067,0.000058526737,0.000019979048,0.000037792863,0.0036027408,0.000017995453,0.001325004],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986966,0.00012257903,0.00023218557,0.0005627367,0.000022465634,0.00036342943],"domain_scores_gemma":[0.9996061,0.00009775451,0.00008135369,0.00018508293,0.000005913136,0.000023816916],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00014487492,0.0002143373,0.0002645713,0.00017323243,0.000111814916,0.000010118427,0.00008402994,0.000261235,0.001644786],"category_scores_gemma":[0.0000075414464,0.00019051695,0.000039021386,0.000095953976,0.00032611936,0.00011394883,0.00011773917,0.00038150643,0.0013990374],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012774604,0.0001607584,0.1703419,0.0000070459914,0.000042788874,9.605747e-7,0.00021153947,0.000009799157,0.82786757,0.00017497364,0.000020636278,0.001034275],"study_design_scores_gemma":[0.0010243854,0.00017008217,0.66432565,0.0000044386693,0.0000076156794,0.0000776595,0.0004801889,0.0000013055286,0.32499442,0.000051125644,0.008682331,0.00018080804],"about_ca_topic_score_codex":0.000033368957,"about_ca_topic_score_gemma":0.000004411482,"teacher_disagreement_score":0.5028732,"about_ca_system_score_codex":0.00014236434,"about_ca_system_score_gemma":0.000019573565,"threshold_uncertainty_score":0.9993785},"labels":[],"label_agreement":null},{"id":"W2967492393","doi":"10.1128/aem.01491-19","title":"Adaptation of Syntenic Xyloglucan Utilization Loci of Human Gut <i>Bacteroidetes</i> to Polysaccharide Side Chain Diversity","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Xyloglucan; Adaptation (eye); Bacteroidetes; Polysaccharide; Biology; Computational biology; Evolutionary biology; Genetics; Gene; Biochemistry","score_opus":0.010106867004912484,"score_gpt":0.20585225303385773,"score_spread":0.19574538602894526,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2967492393","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990149,0.0001676828,0.0002089351,0.000027019018,0.00003751091,0.00029756007,0.0001255672,0.000003245095,0.0001175579],"genre_scores_gemma":[0.9986592,0.0001279454,0.00016959508,0.00030232448,0.00001786371,0.0000037873685,0.0005822899,0.000010811103,0.00012619911],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992669,0.000027446928,0.0002145728,0.00028805636,0.00002657543,0.00017641677],"domain_scores_gemma":[0.99963284,0.0000071758745,0.00012463689,0.00017877163,0.0000056911363,0.000050876166],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008371046,0.00012227618,0.00020160772,0.00004555999,0.00006631244,0.0000018660969,0.00010635077,0.00014188333,0.000044484674],"category_scores_gemma":[0.000002056011,0.00012578614,0.000040971896,0.00003270604,0.00011477042,0.0000026103514,0.0002978171,0.000050730257,0.000013272813],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006137851,0.000055771176,0.020591423,0.000031758915,0.000025163748,1.2933874e-7,0.00020751255,0.000027106287,0.97799087,0.00008069018,0.000052470983,0.00087575277],"study_design_scores_gemma":[0.0007337172,0.00055823056,0.06512131,0.000009460024,0.000023301418,0.000010611421,0.00071820174,0.0000061806063,0.93122053,0.000027187602,0.0013982267,0.00017304109],"about_ca_topic_score_codex":0.000106674954,"about_ca_topic_score_gemma":0.000058428934,"teacher_disagreement_score":0.04677031,"about_ca_system_score_codex":0.000019083189,"about_ca_system_score_gemma":0.000011177597,"threshold_uncertainty_score":0.512941},"labels":[],"label_agreement":null},{"id":"W2969671448","doi":"10.1128/aem.01359-19","title":"Development of Bacterial Therapeutics against the Bovine Respiratory Pathogen Mannheimia haemolytica","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Alberta Health Services; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Alberta Livestock and Meat Agency; Government of Canada; European Food Safety Authority","keywords":"Bovine respiratory disease; Microbiology; Biology; Pathogen; Bacteria; Feedlot; Virology; Animal science","score_opus":0.013102595882792535,"score_gpt":0.21464199932154607,"score_spread":0.20153940343875354,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2969671448","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99726737,0.0010757139,0.000015724137,0.000039674815,0.00020321824,0.00038870142,0.00013856038,0.000015525815,0.00085551495],"genre_scores_gemma":[0.9984663,0.00010638567,0.00008913624,0.00040849045,0.00002173523,0.000022592194,0.00057528197,0.000016510452,0.00029356484],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99895996,0.000083496816,0.00030024236,0.0002962493,0.000014944977,0.0003451053],"domain_scores_gemma":[0.99955195,0.00006122819,0.00008856861,0.00026779305,0.000004978053,0.00002549626],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002103987,0.0001770277,0.00024011626,0.00005275247,0.00021254008,0.000010010985,0.00016673695,0.00020688002,0.0013074462],"category_scores_gemma":[0.0000015403707,0.000124534,0.00005409184,0.00004386814,0.0004781312,0.00002081833,0.00024369851,0.00019084348,0.0006429065],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015254409,0.00012762884,0.0010121957,0.00001302464,0.00015440145,6.975985e-7,0.00033258263,0.0000010073155,0.9875932,0.00031455536,0.00017139922,0.010126792],"study_design_scores_gemma":[0.0013530802,0.000121899146,0.0025976356,0.00000872107,0.000035574092,0.000044754528,0.0006606093,6.983277e-7,0.47865507,0.000024500607,0.51628333,0.00021411094],"about_ca_topic_score_codex":0.0000035534858,"about_ca_topic_score_gemma":0.0000054637367,"teacher_disagreement_score":0.51611197,"about_ca_system_score_codex":0.000041955413,"about_ca_system_score_gemma":0.000046288547,"threshold_uncertainty_score":0.9996055},"labels":[],"label_agreement":null},{"id":"W2972490819","doi":"10.1128/aem.01788-19","title":"Genes Involved in Galactooligosaccharide Metabolism in Lactobacillus reuteri and Their Ecological Role in the Gastrointestinal Tract","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Lactobacillus reuteri; Biology; Mutant; Probiotic; Microbiology; Gene; Biochemistry; Metabolism; Wild type; Bacteria; Genetics","score_opus":0.006635695087444011,"score_gpt":0.1610749560174001,"score_spread":0.15443926092995608,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2972490819","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986949,0.00045070157,2.0738973e-7,0.00029126465,0.000018453089,0.00030189447,0.000054454475,0.0000053935096,0.0001827287],"genre_scores_gemma":[0.9990762,0.00030742615,0.00003501478,0.00043133702,0.000019492856,0.000019204508,0.00010461006,0.0000010578875,0.000005684666],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99907666,0.00007459921,0.00020124928,0.0003225866,0.000022574559,0.00030231828],"domain_scores_gemma":[0.99976486,0.000110417895,0.00004406436,0.00004861067,7.056319e-7,0.000031359432],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022116028,0.00016080786,0.00022608941,0.000020461533,0.0000348025,0.000019214654,0.0001509244,0.00010781528,0.00007715502],"category_scores_gemma":[0.0000021748194,0.00005904555,0.000024518531,0.00007411517,0.00012846333,0.000036117402,0.00012791964,0.00022034775,0.00001123079],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028497876,0.00014118469,0.2646364,0.0000015803645,0.0000010879286,0.0000036981623,0.000106334344,0.0000022771137,0.73170584,0.00008708486,0.0000015476596,0.0032844602],"study_design_scores_gemma":[0.00043355126,0.00016677166,0.9923436,0.000007272018,0.0000019345675,0.00008212455,0.0019760283,0.00002896551,0.0032307082,0.0004312975,0.0011665842,0.00013116699],"about_ca_topic_score_codex":0.00007454892,"about_ca_topic_score_gemma":0.0007008124,"teacher_disagreement_score":0.72847515,"about_ca_system_score_codex":0.000024199224,"about_ca_system_score_gemma":0.000002007698,"threshold_uncertainty_score":0.24078076},"labels":[],"label_agreement":null},{"id":"W2972870406","doi":"10.1128/aem.02566-19","title":"Viable but Nonculturable Escherichia coli O157:H7 and Salmonella enterica in Fresh Produce: Rapid Determination by Loop-Mediated Isothermal Amplification Coupled with a Propidium Monoazide Treatment","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biosensors and Analytical Detection","field":"Engineering","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Agriculture and Agri-Food Canada; University of British Columbia","funders":"Center for Produce Safety","keywords":"Viable but nonculturable; Salmonella enterica; Preharvest; Loop-mediated isothermal amplification; Microbiology; Propidium monoazide; Escherichia coli; Biology; Salmonella; Food microbiology; Foodborne pathogen; Bacteria; Food science; Postharvest; Listeria monocytogenes; Real-time polymerase chain reaction","score_opus":0.004299027354430648,"score_gpt":0.14825956319720826,"score_spread":0.14396053584277763,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2972870406","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99850965,0.00030707463,0.00041981158,0.00014344434,0.000015470176,0.00041937895,0.00006021783,0.00004831291,0.00007664566],"genre_scores_gemma":[0.99851143,0.00067691394,0.00028369474,0.0001276086,0.00002398044,0.00007117472,0.00023954945,0.000021393023,0.000044241675],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992848,0.000015759402,0.00016515702,0.00030870433,0.000025854064,0.00019969743],"domain_scores_gemma":[0.99980533,0.0000151664635,0.00003648716,0.00006875393,0.000001829754,0.000072456496],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00002560066,0.00018251287,0.000203484,0.000021696813,0.00004847759,0.00001829686,0.000033645952,0.000107891276,0.00003439452],"category_scores_gemma":[0.0000013517662,0.00014523146,0.000013381138,0.000064680855,0.00010657436,0.000039854996,0.000016538046,0.000090899935,0.000017013857],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000074537544,0.00006363452,0.00060624565,0.000025430516,0.000022223066,0.0000016458218,0.00015929267,0.00014472927,0.9967271,0.0000015972535,0.000049779286,0.0021237535],"study_design_scores_gemma":[0.0030857828,0.0009326886,0.0066331453,0.000016949363,0.00006563809,0.000029262965,0.0006378408,0.06378947,0.91740733,0.000007858494,0.0068271207,0.0005669069],"about_ca_topic_score_codex":0.000028525788,"about_ca_topic_score_gemma":0.000007822956,"teacher_disagreement_score":0.0793198,"about_ca_system_score_codex":0.00007541933,"about_ca_system_score_gemma":0.000003057421,"threshold_uncertainty_score":0.5922367},"labels":[],"label_agreement":null},{"id":"W2973936246","doi":"10.1128/aem.01786-19","title":"Four Aromatic Intradiol Ring Cleavage Dioxygenases from Aspergillus niger","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"Concordia University; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Enzyme; Aspergillus niger; Biochemistry; Catechol; Dioxygenase; Enzyme kinetics; Aspergillus nidulans; Catabolism; Stereochemistry; Cleavage (geology); Biology; Chemistry; Oxygenase; Gene; Active site","score_opus":0.004458323775550704,"score_gpt":0.15355155957727804,"score_spread":0.14909323580172734,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2973936246","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99459565,0.00006531855,0.000014305705,0.00006036466,0.000169113,0.00030227055,0.00013859024,0.00003481117,0.004619574],"genre_scores_gemma":[0.99782676,0.00011056298,0.00042675735,0.000991001,0.000044117143,0.000005745666,0.00022261888,0.00001923676,0.0003532258],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988245,0.00003545346,0.00024126715,0.00049962744,0.000063995525,0.0003351741],"domain_scores_gemma":[0.9995334,0.000048579765,0.00008612677,0.00022597465,2.3581023e-7,0.00010568112],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000079497586,0.00022574929,0.0002443255,0.00002219649,0.00008490662,0.000018663439,0.00017071566,0.00015281248,0.0069640125],"category_scores_gemma":[0.0000023179089,0.00019340304,0.000045676734,0.00004441411,0.00025683094,0.000067622095,0.0002455142,0.00013207913,0.0055295406],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019018884,0.000046042227,0.04225058,0.000002838026,0.00001963244,0.0000034945547,0.00015963078,0.000011008954,0.95396775,0.000008095481,0.0006790356,0.0028328723],"study_design_scores_gemma":[0.0021304886,0.00016637388,0.42415914,0.000016258842,0.000043926946,0.000072309944,0.00067347795,0.00009669612,0.53528434,0.00034327633,0.036071338,0.0009423789],"about_ca_topic_score_codex":0.00007460598,"about_ca_topic_score_gemma":0.000027172626,"teacher_disagreement_score":0.4186834,"about_ca_system_score_codex":0.0001058843,"about_ca_system_score_gemma":0.0000025323304,"threshold_uncertainty_score":0.99524474},"labels":[],"label_agreement":null},{"id":"W2973973702","doi":"10.1128/aem.01887-19","title":"Maternal Antibodies Provide Bank Voles with Strain-Specific Protection against Infection by the Lyme Disease Pathogen","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Biology; Borrelia afzelii; Borrelia burgdorferi; Tick; Virology; Microbiology; Lyme disease; Antibody; Ixodes; Pathogen; Immunity; Borrelia; Offspring; Immune system; Immunology; Genetics; Pregnancy","score_opus":0.0039457565429086615,"score_gpt":0.16097444457003976,"score_spread":0.1570286880271311,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2973973702","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99568534,0.0018801274,0.000070256065,0.00010112453,0.00020754006,0.0009958992,0.00074825005,0.000084663836,0.00022677603],"genre_scores_gemma":[0.99734914,0.0004959597,0.000006617726,0.00027632294,0.000036566038,0.00014322759,0.0012644735,0.000031251097,0.00039643497],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987882,0.000111195775,0.00020522389,0.00050425605,0.00002311661,0.00036801962],"domain_scores_gemma":[0.99953586,0.000034298442,0.00012849737,0.0002574021,0.000004531565,0.00003938222],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007910053,0.00029236567,0.00023301646,0.00005119641,0.00028268152,0.000028910843,0.00010992812,0.000170302,0.000303742],"category_scores_gemma":[0.0000018026665,0.00019680876,0.000056735404,0.000044118267,0.0006125543,0.00007050123,0.00010279712,0.00023014,0.0005181454],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027428457,0.00013584999,0.10024204,0.000021311145,0.00013262757,0.0000023311327,0.000069316164,0.000019535224,0.89314073,0.0001095411,0.000366228,0.0054862243],"study_design_scores_gemma":[0.0033583182,0.0006030869,0.65389687,0.00004548643,0.00014542497,0.00042247542,0.0004062461,0.000004339212,0.2074531,0.00012558058,0.13274133,0.0007977529],"about_ca_topic_score_codex":0.00006879116,"about_ca_topic_score_gemma":0.00002100606,"teacher_disagreement_score":0.6856876,"about_ca_system_score_codex":0.00007563337,"about_ca_system_score_gemma":0.000016440683,"threshold_uncertainty_score":0.8025628},"labels":[],"label_agreement":null},{"id":"W2974023053","doi":"10.1128/aem.01644-19","title":"Using the Endogenous CRISPR-Cas System of <i>Heliobacterium modesticaldum</i> To Delete the Photochemical Reaction Center Core Subunit Gene","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"Basic Energy Sciences; U.S. Department of Energy","keywords":"CRISPR; Homologous recombination; Biology; Genetics; Plasmid; Gene; Site-specific recombination; Locus (genetics); In silico; Genome; Computational biology; Recombination; Recombinase","score_opus":0.012265012264838768,"score_gpt":0.2292271934884061,"score_spread":0.2169621812235673,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2974023053","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99666005,0.00022237505,0.0023773143,0.000020590687,0.00009557367,0.00040423495,0.00009173669,0.000005364334,0.00012275354],"genre_scores_gemma":[0.99908257,0.00006481679,0.00033681295,0.00023948147,0.00006384407,0.00002061321,0.00015669322,0.00001831458,0.000016856211],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99931425,0.00001833078,0.00016778916,0.00025585943,0.000032233038,0.00021154784],"domain_scores_gemma":[0.99960846,0.000014854601,0.00004478492,0.0002840815,0.0000042047227,0.000043591284],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000074860196,0.00014341382,0.00014119585,0.000014428982,0.00005956779,0.0000058083883,0.00013678723,0.00011409676,0.0000071393883],"category_scores_gemma":[0.0000017692431,0.00009597546,0.000044854565,0.000027254351,0.000114691684,0.0000012027871,0.00017351855,0.00008684318,0.000011587157],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006577757,0.000023072444,0.0011045359,0.000017449871,0.000034031662,5.756986e-7,0.000064226595,0.00021116603,0.99832463,0.00001613338,0.000024243465,0.00011417397],"study_design_scores_gemma":[0.0003142217,0.000091848466,0.00084544567,0.000006250114,0.00002890624,0.00043099088,0.00030000517,0.00012109016,0.9952741,0.0000025759107,0.0024617068,0.00012284207],"about_ca_topic_score_codex":0.000016681177,"about_ca_topic_score_gemma":0.0000015852124,"teacher_disagreement_score":0.0030504966,"about_ca_system_score_codex":0.00002396141,"about_ca_system_score_gemma":0.000006104283,"threshold_uncertainty_score":0.39137658},"labels":[],"label_agreement":null},{"id":"W2978061950","doi":"10.1128/aem.01227-19","title":"Complementary Antibacterial Effects of Bacteriocins and Organic Acids as Revealed by Comparative Analysis of <i>Carnobacterium</i> spp. from Meat","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Advanced Chemical Sensor Technologies","field":"Engineering","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Government of Canada","keywords":"Bacteriocin; Antimicrobial; Food science; Biology; Vacuum packing; Formate; Bacteria; Lactic acid; Microbiology; Biochemistry","score_opus":0.00218408075226837,"score_gpt":0.16685965218639062,"score_spread":0.16467557143412226,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2978061950","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998553,0.00032617713,0.000034286713,0.000005514278,0.000042757223,0.00021727236,0.0006995153,0.000039683626,0.00008179487],"genre_scores_gemma":[0.99799126,0.00045872986,0.00034250808,0.000031686406,0.00000663136,0.000003747054,0.0011452356,0.000012691082,0.000007517079],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99927545,0.000014547713,0.00024958755,0.0002572138,0.00002844882,0.00017475973],"domain_scores_gemma":[0.99960643,0.00010401202,0.00007995904,0.00017487314,0.0000016024803,0.000033104796],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000011469542,0.0001945371,0.0006182318,0.000053065138,0.000016064456,0.000003360709,0.00010099955,0.00013242896,0.00024067058],"category_scores_gemma":[0.0000011637834,0.0001850883,0.000041168307,0.00008647939,0.00027750403,0.000033059052,0.00013402815,0.00009812392,0.000010352192],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037345362,0.000029245048,0.02474865,0.000040127816,0.0005670732,4.6389016e-7,0.00012246377,0.000012486524,0.9742378,0.000010063182,0.000030770894,0.00016353902],"study_design_scores_gemma":[0.0007554706,0.000085359585,0.034272037,0.000009297043,0.00023766604,0.0000023597256,0.00023989467,0.00001701501,0.9635525,0.000035300985,0.00062730885,0.00016581792],"about_ca_topic_score_codex":0.000020389867,"about_ca_topic_score_gemma":0.000004019098,"teacher_disagreement_score":0.010685301,"about_ca_system_score_codex":0.000030497395,"about_ca_system_score_gemma":6.9251865e-7,"threshold_uncertainty_score":0.7547682},"labels":[],"label_agreement":null},{"id":"W2979041109","doi":"10.1128/aem.01344-19","title":"<i>Arcobacter peruensis</i> sp. nov., a Chemolithoheterotroph Isolated from Sulfide- and Organic-Rich Coastal Waters off Peru","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Research Council Canada; Max-Planck-Gesellschaft; Deutsche Forschungsgemeinschaft; Government of Canada","keywords":"Chemocline; Arcobacter; Denitrification; Environmental chemistry; Carbon fixation; Population; Sulfide; Heterotroph; Autotroph; Denitrifying bacteria; Biology; Chemistry; Anoxic waters; Ecology; Bacteria; Nitrogen; Carbon dioxide","score_opus":0.002657957354703146,"score_gpt":0.15186147196138028,"score_spread":0.14920351460667713,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2979041109","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980726,0.00009280865,0.000013393365,0.00015931315,0.00012724132,0.00036533235,0.00020747857,0.000032823897,0.0009289886],"genre_scores_gemma":[0.99602485,0.00025915846,0.00024781353,0.002100293,0.00002931748,0.000011514671,0.0009995688,0.000032850712,0.0002946162],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99837,0.00012268452,0.00027779132,0.00067366654,0.000039380873,0.0005164965],"domain_scores_gemma":[0.99930817,0.00009596087,0.00009560005,0.00037394985,0.0000014349291,0.0001248704],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00010295488,0.0003469855,0.00043003864,0.000030603434,0.00021704673,0.000020785932,0.0002436659,0.00034606652,0.009588271],"category_scores_gemma":[0.000001750721,0.00031320215,0.00004744284,0.000054420365,0.00091058883,0.000096135656,0.0010118907,0.0003952232,0.001750066],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001591709,0.00009351075,0.07745125,0.0000053903927,0.00004788021,0.0000038772396,0.0006421283,0.0000048635793,0.9204568,0.000013744718,0.00045007307,0.00067128055],"study_design_scores_gemma":[0.0074192956,0.0011685629,0.6550149,0.000025386513,0.00021360267,0.0007575429,0.0020971638,0.00009313774,0.18657385,0.0010504406,0.14322884,0.0023572894],"about_ca_topic_score_codex":0.0002472779,"about_ca_topic_score_gemma":0.00017827607,"teacher_disagreement_score":0.73388296,"about_ca_system_score_codex":0.00007035895,"about_ca_system_score_gemma":0.000004931258,"threshold_uncertainty_score":0.999932},"labels":[],"label_agreement":null},{"id":"W2979806703","doi":"10.1128/aem.01594-19","title":"Phenylacetyl Coenzyme A, Not Phenylacetic Acid, Attenuates CepIR-Regulated Virulence in Burkholderia cenocepacia","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique; University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Burkholderia cenocepacia; Virulence; Phenylacetic acid; Mutant; Quorum sensing; Microbiology; Biology; Pathogen; Biochemistry; Gene","score_opus":0.003894781510888229,"score_gpt":0.18840695480800101,"score_spread":0.18451217329711278,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2979806703","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977603,0.0010102775,0.000018941406,0.00018360685,0.00008534977,0.00044057376,0.0001316428,0.000012811943,0.00035648316],"genre_scores_gemma":[0.99742436,0.000846704,0.00020248714,0.0005022736,0.00005837771,0.000045857934,0.0005791867,0.000031318716,0.00030944427],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984311,0.000054194417,0.00024658325,0.0006773392,0.000054693657,0.0005360824],"domain_scores_gemma":[0.99950147,0.000017810098,0.00007036831,0.0003253345,0.000004314278,0.00008072587],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001368015,0.00028351037,0.00032654023,0.0000517783,0.00008112605,0.00001747223,0.00019734599,0.00023468996,0.00020803373],"category_scores_gemma":[0.000007956746,0.00026943878,0.000051410185,0.00005655298,0.00040322565,0.0000056884137,0.0004593971,0.00015299073,0.00020251285],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019172601,0.0000691194,0.005146349,0.000020037349,0.000053484262,0.000002503024,0.00011056737,0.000008220789,0.9933052,0.000032811728,0.00045621136,0.0006037918],"study_design_scores_gemma":[0.0018453368,0.00026018554,0.02077194,0.000011462012,0.000011381595,0.000034229062,0.0004119205,0.000014999213,0.9614829,0.00003522188,0.014746301,0.00037414063],"about_ca_topic_score_codex":0.000024578358,"about_ca_topic_score_gemma":0.000015353015,"teacher_disagreement_score":0.031822298,"about_ca_system_score_codex":0.00004572132,"about_ca_system_score_gemma":0.000015108921,"threshold_uncertainty_score":0.9999758},"labels":[],"label_agreement":null},{"id":"W2980054850","doi":"10.1128/aem.01828-19","title":"Glucose-Mediated Repression of Plant Biomass Utilization in the White-Rot Fungus <i>Dichomitus squalens</i>","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme-mediated dye degradation","field":"Agricultural and Biological Sciences","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"Office of Science; Joint Genome Institute; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Academy of Finland; Genome Canada; U.S. Department of Energy","keywords":"Catabolite repression; Biology; Fungus; Psychological repression; Biomass (ecology); Botany; Proteases; Microbiology; Enzyme; Gene; Agronomy; Biochemistry; Gene expression","score_opus":0.009534118143789377,"score_gpt":0.17361412269918694,"score_spread":0.16408000455539756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2980054850","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99826986,0.00041081122,0.0000013576487,0.00017858074,0.00006484436,0.0003904704,0.0003382648,0.000013763756,0.00033208038],"genre_scores_gemma":[0.9954629,0.00029777654,0.000014262043,0.0002673719,0.000025816398,0.000017892085,0.0038915877,0.0000013186203,0.000021095704],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991444,0.000087411674,0.0002342635,0.00028719282,0.00005912129,0.00018763426],"domain_scores_gemma":[0.99962175,0.00015362032,0.00011939733,0.00007667262,0.0000020123864,0.000026542879],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019082475,0.00012375889,0.00016464776,0.000017287304,0.000047306916,0.000007800787,0.00014573461,0.00015862951,0.00017926846],"category_scores_gemma":[0.0000052279047,0.000047683545,0.00002558514,0.00012255677,0.000109742534,0.000038040518,0.00006835587,0.00010168821,0.000050863287],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000045480683,0.0000889156,0.046574283,0.0000058977266,0.000004527533,9.2269283e-7,0.00015811075,0.0000033021001,0.95014006,0.0000449244,0.00015242035,0.0027811355],"study_design_scores_gemma":[0.0012802561,0.0004073863,0.71439433,0.000028216873,0.00002074116,0.000046503723,0.0029759563,0.00008303789,0.25802648,0.000118658674,0.022266153,0.00035227076],"about_ca_topic_score_codex":0.00004094311,"about_ca_topic_score_gemma":0.00006517347,"teacher_disagreement_score":0.6921136,"about_ca_system_score_codex":0.000017392309,"about_ca_system_score_gemma":0.0000018688562,"threshold_uncertainty_score":0.1962864},"labels":[],"label_agreement":null},{"id":"W2982290461","doi":"10.1128/aem.01903-19","title":"Horizontal Gene Transfer and Acquired Antibiotic Resistance in Salmonella enterica Serovar Heidelberg following<i>In Vitro</i>Incubation in Broiler Ceca","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Agricultural Research Service; National Science Foundation","keywords":"Salmonella enterica; Broiler; Serotype; Microbiology; Salmonella; Incubation; Biology; Gene transfer; Antibiotics; Antibiotic resistance; In vitro; Horizontal gene transfer; Enterobacteriaceae; Gene; Bacteria; Escherichia coli; Food science; Genetics","score_opus":0.004401522752022178,"score_gpt":0.16198921492480808,"score_spread":0.1575876921727859,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2982290461","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99820244,0.00085037213,0.0000015377063,0.0001976836,0.00008286695,0.00034864573,0.00004847051,0.000010951871,0.00025703642],"genre_scores_gemma":[0.99867105,0.00045645516,0.000089612295,0.00034870367,0.000026982052,0.000012757943,0.0003415998,0.0000031007944,0.000049729286],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984965,0.00011633581,0.00035541342,0.00058821816,0.000034843237,0.0004087379],"domain_scores_gemma":[0.99972016,0.00012077021,0.000041006857,0.000064537126,8.562094e-7,0.000052700107],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020530247,0.00021667425,0.00041904775,0.00003321132,0.000036222726,0.000010285752,0.00011106835,0.00023064707,0.00005359959],"category_scores_gemma":[0.0000022369177,0.00012135943,0.000048382673,0.00011554457,0.00011445473,0.0000563837,0.000074742005,0.00011844242,0.000025809908],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018644355,0.00007877299,0.18161845,0.000005666374,0.000006266024,0.000008241444,0.00010954436,0.0000017501586,0.8162417,0.000025075487,0.0000058210076,0.0017122878],"study_design_scores_gemma":[0.0013978708,0.00017746161,0.94394624,0.000019928813,0.000007995424,0.000028087576,0.00045403896,0.000014338345,0.052333515,0.00031041802,0.0009603642,0.0003497349],"about_ca_topic_score_codex":0.00017530624,"about_ca_topic_score_gemma":0.00071252877,"teacher_disagreement_score":0.76390815,"about_ca_system_score_codex":0.000065286506,"about_ca_system_score_gemma":0.0000021956653,"threshold_uncertainty_score":0.4948894},"labels":[],"label_agreement":null},{"id":"W2982329719","doi":"10.1128/aem.02050-19","title":"<i>N</i> -Hydroxyarylamine <i>O</i> -Acetyltransferases Catalyze Acetylation of 3-Amino-4-Hydroxyphenylarsonic Acid in the 4-Hydroxy-3-Nitrobenzenearsonic Acid Transformation Pathway of <i>Enterobacter</i> sp. Strain CZ-1","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Arsenic contamination and mitigation","field":"Environmental Science","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Innovates; Natural Sciences and Engineering Research Council of Canada; Nanjing Agricultural University; Fundamental Research Funds for the Central Universities; Natural Science Foundation of Jiangsu Province; Government of Jiangsu Province; Ministry of Education of the People's Republic of China; National Natural Science Foundation of China; Jiangsu Academy of Agricultural Sciences","keywords":"Acetylation; Acetyltransferases; Enterobacter cloacae; Transformation (genetics); Biology; Biochemistry; Acetyltransferase; Chemistry; Enterobacter; Strain (injury); Microbiology; Enterobacteriaceae; Escherichia coli; Gene","score_opus":0.0032930030979772614,"score_gpt":0.1640198047209954,"score_spread":0.16072680162301814,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2982329719","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966642,0.00016490411,0.00035621674,0.00014089403,0.000059591053,0.0007915904,0.00027070876,0.000013605555,0.0015382705],"genre_scores_gemma":[0.9984641,0.00021415768,0.00013967926,0.00033934976,0.000010752486,0.000036835158,0.0007346748,0.000018242712,0.000042183063],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99844265,0.000109273395,0.0005876902,0.0003891591,0.00015546771,0.00031577543],"domain_scores_gemma":[0.99938655,0.00006171581,0.00021327211,0.00029091607,0.0000026058756,0.000044967914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037188403,0.00025949432,0.00035188402,0.00006718279,0.000064235894,0.0000090302565,0.00025514304,0.00016791203,0.00053101126],"category_scores_gemma":[0.000003023805,0.00021857632,0.00009241156,0.0001601106,0.0003695981,0.00022545397,0.00007850838,0.00019530623,0.00007074704],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000045605728,0.00017898074,0.0071975756,0.000035085577,0.0000151669665,7.064754e-7,0.0025376943,0.00014211371,0.9821022,0.00018645902,0.000010864552,0.007547511],"study_design_scores_gemma":[0.0027223472,0.0003570011,0.04140637,0.000035076962,0.00004045642,0.00006109913,0.0020824056,0.000340002,0.94968927,0.00015458521,0.0027656571,0.00034575467],"about_ca_topic_score_codex":0.00006455263,"about_ca_topic_score_gemma":0.00012427177,"teacher_disagreement_score":0.034208793,"about_ca_system_score_codex":0.0000946947,"about_ca_system_score_gemma":0.000010900395,"threshold_uncertainty_score":0.89132833},"labels":[],"label_agreement":null},{"id":"W2982505386","doi":"10.1128/aem.01922-19","title":"Prophages in Lactobacillus reuteri Are Associated with Fitness Trade-Offs but Can Increase Competitiveness in the Gut Ecosystem","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Lactobacillus reuteri; Prophage; Lysogen; Biology; Microbiology; Bacteria; Microbiome; Bacteriophage; Lactobacillus; Genetics; Escherichia coli; Gene","score_opus":0.0044382919691839376,"score_gpt":0.17013921729954085,"score_spread":0.1657009253303569,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2982505386","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978054,0.000027449976,0.0000015188253,0.0002998234,0.000056561632,0.0006083873,0.00033501865,0.000011780414,0.00085403235],"genre_scores_gemma":[0.99894583,0.000033882476,0.000019103301,0.00050915976,0.00001106279,0.000063668085,0.00023804023,0.000016603772,0.00016262785],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988275,0.00014077919,0.00022465311,0.0004216399,0.000047928443,0.00033750397],"domain_scores_gemma":[0.99951094,0.00007844315,0.00011689325,0.00024977076,5.251288e-7,0.000043403226],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001632288,0.00021895643,0.00028456183,0.00003804544,0.00007986241,0.000024242698,0.00025994435,0.00012892147,0.0006536069],"category_scores_gemma":[0.0000027470205,0.00015455292,0.000028434091,0.000102854436,0.00022910755,0.000073360636,0.0001930875,0.00024619786,0.000101035715],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006375339,0.0002134868,0.12662765,0.000010956664,0.0000132680525,0.000033960972,0.00054317154,0.00007228592,0.87204045,0.00001354179,0.000021841968,0.00034564934],"study_design_scores_gemma":[0.0012799678,0.000110421825,0.9873521,0.000054062308,0.000012561012,0.00015628895,0.0024590534,0.0000130029475,0.0053216745,0.000009253438,0.002968627,0.00026301862],"about_ca_topic_score_codex":0.0005599961,"about_ca_topic_score_gemma":0.005328507,"teacher_disagreement_score":0.86671877,"about_ca_system_score_codex":0.00026093543,"about_ca_system_score_gemma":0.000005476058,"threshold_uncertainty_score":0.7156537},"labels":[],"label_agreement":null},{"id":"W2985828797","doi":"10.1128/aem.02353-19","title":"Steryl Ester Formation and Accumulation in Steroid-Degrading Bacteria","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Steroid Chemistry and Biochemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Bacteria; Sterol; Food science; Chemistry; Nutraceutical; Cholesterol; Steroid; Biochemistry; Fatty acid; Biology","score_opus":0.0051157128136383,"score_gpt":0.18824622108683342,"score_spread":0.18313050827319513,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2985828797","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993175,0.00018507152,0.000026903768,0.0000219596,0.00003326347,0.00013041554,0.00002291339,0.000003976432,0.00025798866],"genre_scores_gemma":[0.99859244,0.0001230285,0.0000993731,0.00018189133,0.000038676717,0.000009570575,0.00077692454,0.00000903507,0.00016905894],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993922,0.000011053621,0.0001418142,0.0002828127,0.00001662607,0.00015548372],"domain_scores_gemma":[0.9997917,0.0000061697447,0.000047559464,0.00012156744,0.0000010223657,0.000032027343],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000048870035,0.00012758104,0.00010888692,0.000016672617,0.00002563214,0.000013516898,0.00004992601,0.00017143764,0.000030274823],"category_scores_gemma":[9.872733e-7,0.00012365816,0.00001569679,0.000013632235,0.000056111938,0.0000067348356,0.00011443064,0.00006060376,0.000009952016],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055441902,0.000017645338,0.02189248,0.00002600024,0.0000073751316,3.7473083e-7,0.00004699444,0.0000029602536,0.97682905,0.0000025167215,0.00001842759,0.0011007384],"study_design_scores_gemma":[0.0008872622,0.00005764617,0.020817058,0.0000087700755,0.0000049992545,0.00008085126,0.00022872025,0.000020466168,0.9748696,0.000013698791,0.0028423683,0.0001685447],"about_ca_topic_score_codex":0.0000012558061,"about_ca_topic_score_gemma":0.0000015219747,"teacher_disagreement_score":0.0028239407,"about_ca_system_score_codex":0.000014710964,"about_ca_system_score_gemma":0.0000025649938,"threshold_uncertainty_score":0.5042633},"labels":[],"label_agreement":null},{"id":"W2990957641","doi":"10.1128/aem.02294-19","title":"Erratum for MacPherson et al., “Multistrain Probiotic Modulation of Intestinal Epithelial Cells’ Immune Response to a Double-Stranded RNA Ligand, Poly(I·C)”","year":2019,"lang":"en","type":"erratum","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lallemand (Canada)","funders":"","keywords":"Immune system; Probiotic; RNA; Immune modulation; Microbiology; Double stranded; Ligand (biochemistry); Biology; Chemistry; Molecular biology; Receptor; Immunology; Biochemistry; DNA; Gene; Genetics; Bacteria","score_opus":0.01120189447332574,"score_gpt":0.20785115958381295,"score_spread":0.19664926511048722,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2990957641","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9847679,0.0005226313,0.00015024134,0.0021638246,0.0029198728,0.003071379,0.005556265,0.000046986977,0.00080085907],"genre_scores_gemma":[0.9865158,0.00017861766,0.0005192022,0.00082616205,0.00014012844,0.00006538688,0.0058624595,0.000011362256,0.0058808355],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980906,0.000075256496,0.0005170492,0.0007515792,0.000080442034,0.00048502992],"domain_scores_gemma":[0.99929,0.00013607329,0.00031360536,0.00013829391,0.000010610102,0.000111452784],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038510797,0.0004578907,0.00063354155,0.000043923308,0.00012782871,0.000033734388,0.0002973785,0.0005672504,0.000060190167],"category_scores_gemma":[0.000006256003,0.00024312295,0.00017155777,0.00008988151,0.00022291728,0.000031676052,0.00019935936,0.00043603132,0.000027338334],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027907742,0.00018778618,0.000010715784,0.000049551418,0.000064119864,0.0000013377032,0.00011073814,0.0000098109385,0.98079866,0.000050939896,0.011766027,0.0041595176],"study_design_scores_gemma":[0.0061837905,0.006073505,0.010644928,0.00034056057,0.00021903038,0.00009913651,0.0009179222,0.00017230044,0.63102007,0.0004029699,0.34196013,0.001965673],"about_ca_topic_score_codex":0.00006878229,"about_ca_topic_score_gemma":0.000038556416,"teacher_disagreement_score":0.34977862,"about_ca_system_score_codex":0.00007541677,"about_ca_system_score_gemma":0.000024752493,"threshold_uncertainty_score":0.99142665},"labels":[],"label_agreement":null},{"id":"W2992566175","doi":"10.1128/aem.02123-19","title":"The Locus of Heat Resistance Confers Resistance to Chlorine and Other Oxidizing Chemicals in Escherichia coli","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; China Scholarship Council; Alberta Agriculture and Forestry; Canada Research Chairs; Government of Canada; Alberta Innovates","keywords":"Escherichia coli; Chlorine; Oxidizing agent; Virulence; Biology; Locus (genetics); Microbiology; Pathogenic Escherichia coli; Genetics; Gene; Chemistry","score_opus":0.004288212059008641,"score_gpt":0.2042063362839621,"score_spread":0.19991812422495345,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2992566175","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954529,0.002771547,0.0000069883126,0.0002413181,0.000020531574,0.00033247893,0.000031879365,0.0000024987196,0.0011398786],"genre_scores_gemma":[0.99720126,0.0012890312,0.00027278945,0.000357673,0.00001857473,0.00004380955,0.000013831828,0.000013595873,0.00078940304],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991861,0.00003049578,0.0001686141,0.00032346553,0.000034683144,0.000256648],"domain_scores_gemma":[0.9996764,0.000041640684,0.000035055924,0.00019673425,0.0000034484208,0.000046715828],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015924108,0.00012975205,0.00018549533,0.000016206688,0.000057468238,0.0000068915447,0.00011388635,0.000088985675,0.0000068072995],"category_scores_gemma":[0.000012164487,0.00010237787,0.000018761531,0.00004384791,0.00036727142,0.0000015589469,0.0002578696,0.000086780085,0.00000466606],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029527416,0.000021660602,0.0063934796,0.000020585376,0.000028179029,3.5299092e-7,0.0000654696,0.0000030966942,0.9926769,0.00022538092,0.00020609645,0.00006350479],"study_design_scores_gemma":[0.00075381383,0.00008649893,0.0071393657,0.000015892343,0.000004638283,0.0000015898805,0.00045569448,8.544142e-7,0.8116183,0.00004981342,0.17970924,0.00016430151],"about_ca_topic_score_codex":0.000011752306,"about_ca_topic_score_gemma":0.0001497254,"teacher_disagreement_score":0.18105862,"about_ca_system_score_codex":0.000020062096,"about_ca_system_score_gemma":0.0000102213035,"threshold_uncertainty_score":0.41748482},"labels":[],"label_agreement":null},{"id":"W2993119722","doi":"10.1128/aem.02443-19","title":"Metabolic and Genomic Traits of Phytobeneficial Phenazine-Producing<i>Pseudomonas</i>spp. Are Linked to Rhizosphere Colonization in<i>Arabidopsis thaliana</i>and<i>Solanum tuberosum</i>","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Moncton","funders":"New Brunswick Innovation Foundation; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Rhizosphere; Biology; Pseudomonas chlororaphis; Arabidopsis thaliana; Phyllosphere; Colonization; Solanum tuberosum; Rhizobacteria; Microbiology; Botany; Pseudomonas; Pseudomonas fluorescens; Genetics; Bacteria; Gene; Mutant","score_opus":0.005963817729794191,"score_gpt":0.1698110577780821,"score_spread":0.1638472400482879,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2993119722","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99820435,0.00071706605,0.0000010769726,0.0001780177,0.00006804705,0.00034500443,0.00036744657,0.000010549928,0.000108430475],"genre_scores_gemma":[0.99858934,0.0005909224,0.000087093285,0.0003772704,0.00004473938,0.000013613738,0.00021694509,0.0000027209628,0.000077375014],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99908566,0.000044872435,0.00023937586,0.000377542,0.000027624665,0.00022490852],"domain_scores_gemma":[0.9997086,0.00007244395,0.00010190933,0.000056761954,0.000004321365,0.00005596061],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011260983,0.00017326891,0.0003240509,0.000018045235,0.00008651372,0.000017029359,0.00009755536,0.00012893471,0.00013508179],"category_scores_gemma":[0.000004196266,0.0000952461,0.000028029324,0.00008860123,0.00009290569,0.000052650204,0.00014579996,0.0001302497,0.00003400586],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000068125766,0.00007618031,0.045799885,0.000008979128,0.0000149998805,5.180418e-7,0.00016848897,0.000011071188,0.94781935,0.0000270542,0.00005837923,0.0059469715],"study_design_scores_gemma":[0.0004698505,0.00015914957,0.9306055,0.000022520377,0.000021009651,0.000060362432,0.0008091892,0.000009873749,0.059318893,0.000042317424,0.008239567,0.00024176748],"about_ca_topic_score_codex":0.00029911197,"about_ca_topic_score_gemma":0.00059239904,"teacher_disagreement_score":0.88850045,"about_ca_system_score_codex":0.000018467668,"about_ca_system_score_gemma":0.0000026544033,"threshold_uncertainty_score":0.3884023},"labels":[],"label_agreement":null},{"id":"W2994173643","doi":"10.1128/aem.01913-19","title":"A Comprehensive Account of Escherichia coli Sequence Type 131 in Wastewater Reveals an Abundance of Fluoroquinolone-Resistant Clade A Strains","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Agence Nationale de la Recherche; Joint Programming Initiative on Antimicrobial Resistance","keywords":"Biology; Antibiotics; Pathogen; Antibiotic resistance; Clade; Wastewater; Niche; Microbiology; Abundance (ecology); Ecological niche; Escherichia coli; Ecology; clone (Java method); Phylogenetics; Genetics; Gene; Environmental engineering; Environmental science","score_opus":0.00947102844633456,"score_gpt":0.2196224647218803,"score_spread":0.21015143627554572,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2994173643","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990224,0.0003639784,0.0000066503626,0.000010259084,0.000051635456,0.00028661222,0.00015737797,0.0000026405053,0.000098437245],"genre_scores_gemma":[0.99805164,0.00029609332,0.0011432309,0.000095312564,0.000015241523,0.0000040999935,0.00031660032,0.000016228225,0.00006155454],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990302,0.000044828812,0.00030469263,0.00036599548,0.00003325623,0.00022106199],"domain_scores_gemma":[0.9995033,0.0000089802215,0.0001524841,0.0002943594,0.000006931916,0.000033932454],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005309557,0.00016136064,0.00030665207,0.00002817747,0.000016404392,0.0000037555114,0.00015864822,0.00019496538,0.00004560759],"category_scores_gemma":[0.0000019863571,0.00015069352,0.000029913172,0.00003892547,0.0004192992,0.0000049200166,0.00012161094,0.000077965924,0.000007771435],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003165464,0.00008658113,0.015125622,0.00006642612,0.000029831768,0.0000013950072,0.00010498195,0.000023429448,0.9840618,0.00007884375,0.000015396934,0.00008914074],"study_design_scores_gemma":[0.0008175409,0.0005900091,0.15300307,0.000030587493,0.0000107422275,0.000012382833,0.0006591523,0.0000061921937,0.8434633,0.00005717448,0.0011393646,0.00021049056],"about_ca_topic_score_codex":0.000028510758,"about_ca_topic_score_gemma":0.000014509561,"teacher_disagreement_score":0.1405985,"about_ca_system_score_codex":0.00002167682,"about_ca_system_score_gemma":0.000019609279,"threshold_uncertainty_score":0.61451036},"labels":[],"label_agreement":null},{"id":"W2996362415","doi":"10.1128/aem.02461-19","title":"Genetic Determinants of Hydroxycinnamic Acid Metabolism in Heterofermentative Lactobacilli","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Mitacs; Canada Research Chairs; Government of Canada","keywords":"Hydroxycinnamic acid; Lactobacillus fermentum; Biochemistry; Metabolism; Biology; Lactobacillus; Secondary metabolism; Lactic acid; Lactobacillus plantarum; Phenolic acid; Bacteria; Fermentation; Enzyme; Chemistry; Biosynthesis; Genetics","score_opus":0.004479852380156583,"score_gpt":0.17080492391784358,"score_spread":0.166325071537687,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2996362415","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990729,0.00027565545,4.8737644e-7,0.00001817597,0.000050276,0.00024341696,0.00013272147,0.000005390029,0.00020099136],"genre_scores_gemma":[0.9994672,0.00019969251,0.0000630438,0.00013596853,0.000012054532,0.000008261254,0.00007897559,0.0000012754479,0.000033519198],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99923676,0.0000274262,0.00021492544,0.00027027368,0.000027676548,0.00022291791],"domain_scores_gemma":[0.9998195,0.000022524879,0.000076196986,0.00004653938,0.0000010852663,0.000034162833],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000051049676,0.0001323525,0.00024284187,0.000014885775,0.000026710135,0.0000045278366,0.00010719234,0.00010429442,0.00021832602],"category_scores_gemma":[4.913315e-7,0.00006131658,0.000033982153,0.00005106233,0.00012499793,0.000023291333,0.000115138144,0.00007893359,0.00004161936],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024033661,0.00006996786,0.06697484,0.0000044287613,0.000008200853,0.0000010010931,0.000079070436,0.0000019689624,0.92200017,0.000022575254,0.0000018676377,0.0108119035],"study_design_scores_gemma":[0.0005481869,0.00022461683,0.7901058,0.000008090505,0.000009677892,0.000019130322,0.00041089623,0.000029754774,0.2076616,0.00019873379,0.0006005385,0.00018295458],"about_ca_topic_score_codex":0.000040642284,"about_ca_topic_score_gemma":0.000053859523,"teacher_disagreement_score":0.723131,"about_ca_system_score_codex":0.000017887798,"about_ca_system_score_gemma":0.0000014052226,"threshold_uncertainty_score":0.25004178},"labels":[],"label_agreement":null},{"id":"W2996471407","doi":"10.1128/aem.02101-19","title":"Clinically Relevant Campylobacter jejuni Subtypes Are Readily Found and Transmitted within the Cattle Production Continuum but Present a Limited Foodborne Risk","year":2019,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Alberta Livestock and Meat Agency; Government of Canada","keywords":"Campylobacter jejuni; Feces; Campylobacter; Biology; Microbiology; Bacteria; Food microbiology; Food science","score_opus":0.008797549799383776,"score_gpt":0.18215440657767024,"score_spread":0.17335685677828647,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2996471407","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965928,0.00049638265,0.000001437931,0.001718101,0.00023079696,0.0005996064,0.00016347194,0.000034870238,0.0001624839],"genre_scores_gemma":[0.9975869,0.0007855172,0.000046232013,0.00072175096,0.00018713216,0.000033001117,0.00028317538,0.0000036532786,0.0003526605],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983242,0.00023731937,0.00040249276,0.00065452803,0.00004476812,0.00033669782],"domain_scores_gemma":[0.99905825,0.00043883617,0.00026996256,0.00014155437,0.00000642462,0.00008498914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043274547,0.000239228,0.00036788028,0.00001053361,0.0002093188,0.000023639115,0.00016363601,0.00025270646,0.000121698315],"category_scores_gemma":[0.000025578745,0.00009214267,0.00006414017,0.00006397895,0.00051217264,0.000040559513,0.000115629075,0.00028901428,0.00006875234],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021231733,0.00009638999,0.22734167,0.000006395525,0.000054099797,9.753967e-7,0.00017296114,0.0000023060165,0.7673406,0.000036776182,0.00039125816,0.0043442436],"study_design_scores_gemma":[0.0004936879,0.0005205991,0.97513235,0.000012235357,0.000068282374,0.000117640666,0.0013985847,0.000008151698,0.0060880734,0.00078750437,0.015087696,0.00028519693],"about_ca_topic_score_codex":0.00016941733,"about_ca_topic_score_gemma":0.000263845,"teacher_disagreement_score":0.7612525,"about_ca_system_score_codex":0.000021044232,"about_ca_system_score_gemma":0.0000033592235,"threshold_uncertainty_score":0.37574688},"labels":[],"label_agreement":null},{"id":"W3005432164","doi":"10.1128/aem.02846-19","title":"Performance of a Geosynthetic-Clay-Liner Cover System at a Cu/Zn Mine Tailings Impoundment","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mine drainage and remediation techniques","field":"Environmental Science","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Energy, Northern Development and Mines; University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Tailings; Geology; Geosynthetic clay liner; Cover (algebra); Geotechnical engineering; Clay minerals; Tailings dam; Mining engineering; Environmental science; Geochemistry; Soil science; Metallurgy; Materials science; Soil water; Hydraulic conductivity; Engineering","score_opus":0.004126283868979146,"score_gpt":0.1633853579324765,"score_spread":0.15925907406349735,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3005432164","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963243,0.000078223,0.000051958203,0.00017220086,0.00002397799,0.00028642995,0.00004668633,0.000035434095,0.0029808136],"genre_scores_gemma":[0.9983681,0.00015095714,0.0003605106,0.0005525919,0.000032314514,0.000027921473,0.00010425406,0.000015174093,0.00038820016],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99904644,0.000019626015,0.0002797675,0.0003572061,0.00007016703,0.00022679266],"domain_scores_gemma":[0.99961364,0.000021400187,0.00012882352,0.0001423284,8.5280504e-7,0.00009296444],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00008784493,0.00017638093,0.00023800913,0.000017813798,0.0000832411,0.0000038769167,0.00013434415,0.00011220278,0.0010907175],"category_scores_gemma":[0.0000020307361,0.0001455103,0.000044383243,0.000041300595,0.0003699714,0.000038676502,0.00038889653,0.00008059091,0.00037141002],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058255115,0.000041907948,0.008276043,0.000042250846,0.0000117958725,0.0000021288022,0.000453725,0.00006503074,0.98959607,0.000014919386,0.0008694517,0.0005684239],"study_design_scores_gemma":[0.0008477026,0.00037644512,0.0016559596,0.000014847226,0.00004282016,0.00007393558,0.0004825683,0.001960856,0.96580476,0.0000068774702,0.02838459,0.0003486168],"about_ca_topic_score_codex":0.000042799926,"about_ca_topic_score_gemma":0.0000024050169,"teacher_disagreement_score":0.027515138,"about_ca_system_score_codex":0.00012095309,"about_ca_system_score_gemma":0.0000023477662,"threshold_uncertainty_score":0.99982244},"labels":[],"label_agreement":null},{"id":"W3005611277","doi":"10.1128/aem.00091-20","title":"Cultivable, Host-Specific <i>Bacteroidetes</i> Symbionts Exhibit Diverse Polysaccharolytic Strategies","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Science Foundation","keywords":"Bacteroidetes; Biology; Host (biology); Evolutionary biology; Symbiosis; Zoology; Ecology; Computational biology; Microbiology; Bacteria; Genetics; 16S ribosomal RNA","score_opus":0.01024005279800535,"score_gpt":0.16177761697231954,"score_spread":0.1515375641743142,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3005611277","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978311,0.0004971533,0.0000014360949,0.00057134207,0.000051598538,0.00022995949,0.0002565385,0.00007724482,0.00048362056],"genre_scores_gemma":[0.99753946,0.00013892254,0.00006916095,0.0017409034,0.00015273933,0.000015567566,0.00030230486,0.00000311982,0.0000378484],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99878186,0.000033895383,0.00020478631,0.00054537033,0.00005369245,0.00038037956],"domain_scores_gemma":[0.9996415,0.000057757912,0.00007739888,0.000059704522,0.0000024187827,0.00016123735],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000046281537,0.00024661992,0.00024833714,0.000007876335,0.0001891239,0.000053285257,0.00020968301,0.0001632897,0.0007888316],"category_scores_gemma":[0.0000017703982,0.00011771554,0.000069201335,0.00008542409,0.0002284541,0.00010418381,0.00022444743,0.00016020454,0.00043371593],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039943046,0.000047819954,0.004378742,0.0000035888252,0.000022184868,0.000004554881,0.00015833748,1.1568252e-7,0.9907547,0.00006903047,0.00047232246,0.0040486646],"study_design_scores_gemma":[0.0011566725,0.000513685,0.0862409,0.000011545672,0.00005484872,0.000085873246,0.0061248047,0.000004548387,0.87037134,0.0001599664,0.0343467,0.00092909526],"about_ca_topic_score_codex":0.000026702943,"about_ca_topic_score_gemma":0.000007774982,"teacher_disagreement_score":0.12038334,"about_ca_system_score_codex":0.000029612203,"about_ca_system_score_gemma":0.0000025902057,"threshold_uncertainty_score":0.8637153},"labels":[],"label_agreement":null},{"id":"W3006602548","doi":"10.1128/aem.00051-20","title":"Fitness and Productivity Increase with Ecotypic Diversity among <i>Escherichia coli</i> Strains That Coevolved in a Simple, Constant Environment","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health; Government of Canada; Natural Sciences and Engineering Research Council of Canada; Georgia Institute of Technology; Canada Foundation for Innovation; NASA Astrobiology Institute; M.J. Murdock Charitable Trust; National Aeronautics and Space Administration","keywords":"Biology; Constant (computer programming); Evolutionary biology; Biogeochemical cycle; Taxon; Productivity; Ecosystem; Ecology; Ecotype; Simple (philosophy); Diversity (politics); Genetics; Computer science","score_opus":0.00523988766133408,"score_gpt":0.15870750808469355,"score_spread":0.15346762042335949,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3006602548","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99855477,0.00023008378,0.00041709188,0.0001289704,0.000008625123,0.00033351878,0.00017396807,0.0000068139707,0.0001461589],"genre_scores_gemma":[0.9982054,0.00037206704,0.00032228872,0.000578869,0.000020265315,0.000015021904,0.00044909617,0.00001251663,0.000024475312],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99909747,0.00004367322,0.000109455796,0.00049616984,0.000034446777,0.00021880218],"domain_scores_gemma":[0.99968314,0.000006234773,0.000056147157,0.00012988564,0.0000011922857,0.00012341773],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006424993,0.00018340319,0.00018243355,0.000014614674,0.0001081431,0.0000070247966,0.000076407065,0.00012700545,0.000026827503],"category_scores_gemma":[0.0000021976825,0.00017057071,0.000018258937,0.000025002444,0.00065777946,0.0000040505233,0.000423965,0.00010808454,0.0000030616302],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001601151,0.00008280953,0.24828912,0.000013524477,0.000031673848,0.0000042338474,0.00014850244,0.00014067788,0.7507507,0.000027323375,0.0000489997,0.0003022737],"study_design_scores_gemma":[0.0039406293,0.000732807,0.95077527,0.000006529158,0.00006642655,0.00004276874,0.0014821123,0.0003427479,0.036386706,0.00007277433,0.0054600723,0.00069116894],"about_ca_topic_score_codex":0.00003463114,"about_ca_topic_score_gemma":0.00010879247,"teacher_disagreement_score":0.71436405,"about_ca_system_score_codex":0.000020851005,"about_ca_system_score_gemma":0.000011518313,"threshold_uncertainty_score":0.6955672},"labels":[],"label_agreement":null},{"id":"W3008205224","doi":"10.1128/aem.00096-20","title":"Identification and Antimicrobial Susceptibility Testing of <i>Campylobacter</i> Using a Microfluidic Lab-on-a-Chip Device","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biosensors and Analytical Detection","field":"Engineering","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Campylobacter; Campylobacter jejuni; Microbiology; Antimicrobial; Antibiotic resistance; Chromogenic; Antibiotics; Biology; Bacteria; Chemistry; Chromatography","score_opus":0.013026899522241763,"score_gpt":0.18387594600033294,"score_spread":0.17084904647809118,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3008205224","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991758,0.0001518959,0.0003232947,0.000041122006,0.000034204637,0.00010923134,0.000080338956,0.000034514625,0.000049625887],"genre_scores_gemma":[0.999296,0.000118795535,0.00028117886,0.00022130366,0.000039184062,0.0000011774947,0.000026822141,0.000013936273,0.0000016019111],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993784,0.0000149868165,0.00020810065,0.00023786287,0.000018397179,0.00014227604],"domain_scores_gemma":[0.99979556,0.000034478235,0.000038595732,0.0000741853,0.0000020724124,0.000055129243],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005178931,0.0001273969,0.00017192125,0.000021946042,0.000051807612,0.000010253067,0.00004049753,0.000097910706,0.0000086857635],"category_scores_gemma":[0.0000050306303,0.00012635326,0.000021125861,0.000059949638,0.00016861326,0.000024607658,0.00004352861,0.000106511296,0.000009654353],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013677467,0.00001695339,0.0019719652,0.00006739994,0.00001525788,4.452561e-7,0.0000637181,0.00006545335,0.99593383,0.000011549565,0.000035715042,0.0018040162],"study_design_scores_gemma":[0.0003283135,0.000056748995,0.006543525,0.000012415759,0.000031876403,0.000024339462,0.00008701284,0.0018665509,0.9905073,0.000020496333,0.0003600703,0.00016135316],"about_ca_topic_score_codex":0.00000823142,"about_ca_topic_score_gemma":8.3416853e-7,"teacher_disagreement_score":0.005426551,"about_ca_system_score_codex":0.000020823112,"about_ca_system_score_gemma":0.0000018846589,"threshold_uncertainty_score":0.5152536},"labels":[],"label_agreement":null},{"id":"W3012321567","doi":"10.1128/aem.00367-20","title":"Multifunctional Acidocin 4356 Combats <i>Pseudomonas aeruginosa</i> through Membrane Perturbation and Virulence Attenuation: Experimental Results Confirm Molecular Dynamics Simulation","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institute for Genetic Engineering and Biotechnology","keywords":"Pseudomonas aeruginosa; Microbiology; Biofilm; Antimicrobial; Biology; Bacteria; Pseudomonas; Antibiotics; Lactobacillus acidophilus; Antimicrobial peptides; Antibacterial agent; In silico; Biochemistry; Probiotic; Gene","score_opus":0.011120142724887714,"score_gpt":0.2035077920536826,"score_spread":0.1923876493287949,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3012321567","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99425954,0.0010603446,0.0017523128,0.0013327883,0.0001644317,0.0003882359,0.00056758366,0.000058226702,0.0004165642],"genre_scores_gemma":[0.99314725,0.00014984279,0.00032937143,0.003079974,0.000044510267,0.000018229237,0.0030655018,0.00002242736,0.0001429127],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987002,0.00007269199,0.00033034754,0.00058320095,0.000027892285,0.00028568614],"domain_scores_gemma":[0.9995487,0.00012768588,0.00015269776,0.0001241741,0.0000064005676,0.00004038718],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00006349816,0.0002906094,0.00031186806,0.000026824091,0.00027968557,0.000022449945,0.000091847796,0.00028226952,0.00012876437],"category_scores_gemma":[0.000009101021,0.00028523008,0.000052814194,0.000041822415,0.00074421463,0.00013787097,0.00016349963,0.00023327777,0.0000846538],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004436184,0.00009406244,0.00016915059,0.0000136635,0.000075570606,0.000003195685,0.0012785653,0.00057528185,0.9950857,0.0012050141,0.00021119528,0.0008449915],"study_design_scores_gemma":[0.0043543344,0.00036928637,0.0008189979,0.000016366987,0.000066005385,0.00013655282,0.0028339669,0.0010980375,0.9802362,0.00012833945,0.009400919,0.0005409918],"about_ca_topic_score_codex":0.000030657957,"about_ca_topic_score_gemma":0.000002121462,"teacher_disagreement_score":0.01484949,"about_ca_system_score_codex":0.00007025328,"about_ca_system_score_gemma":0.000011452673,"threshold_uncertainty_score":0.99996},"labels":[],"label_agreement":null},{"id":"W3013956355","doi":"10.1128/aem.00052-20","title":"Contrasting Patterns of Functional Diversity in Coffee Root Fungal Communities Associated with Organic and Conventionally Managed Fields","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Concordia University of Edmonton; Office of Experimental Program to Stimulate Competitive Research; University of Minnesota; North Dakota State University; National Science Foundation","keywords":"Rhizosphere; Biology; Trophic level; Species richness; Agronomy; Organic farming; Botany; Ecology","score_opus":0.011887467270060173,"score_gpt":0.14210493433069601,"score_spread":0.13021746706063583,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3013956355","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99862313,0.000055424636,0.000017127193,0.00019470617,0.000014787539,0.00007744077,0.00085305236,0.0000068329364,0.00015748636],"genre_scores_gemma":[0.9977971,0.00007465043,0.0000029972794,0.00030067307,0.000013488553,0.0000021127296,0.0017929367,5.036455e-7,0.000015567375],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99967283,0.00003275192,0.00008809222,0.00009666879,0.000022671613,0.00008700552],"domain_scores_gemma":[0.99953836,0.0003742721,0.000045101013,0.000011645878,0.000001916896,0.000028705008],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000039517352,0.00006694471,0.000113060596,0.000005505383,0.00011990216,0.0000051473967,0.000042602253,0.000055624474,0.001370218],"category_scores_gemma":[0.0000034855218,0.00003373659,0.000012557866,0.000024915425,0.00002954329,0.000022021386,0.0001186514,0.000106609776,0.000004750122],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000061423074,0.000031043124,0.64111114,0.000003650063,0.00002150216,0.0000016297653,0.00014915371,0.0000034986622,0.35819393,0.00011502413,0.000032538926,0.00027544942],"study_design_scores_gemma":[0.00027286183,0.00019473578,0.99597156,0.000017399603,0.00001772709,0.000022729544,0.0019608184,0.000033784578,0.0011333722,0.000060001577,0.00021687921,0.000098103905],"about_ca_topic_score_codex":0.00016774787,"about_ca_topic_score_gemma":0.00085794495,"teacher_disagreement_score":0.35706055,"about_ca_system_score_codex":0.0000075069074,"about_ca_system_score_gemma":9.5105594e-7,"threshold_uncertainty_score":0.99954265},"labels":[],"label_agreement":null},{"id":"W3014219950","doi":"10.1128/aem.00354-20","title":"Custom Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometric Database for Identification of Environmental Isolates of the Genus <i>Burkholderia</i> and Related Genera","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Burkholderia; Metagenomics; Biology; Mass spectrometry; Isolation (microbiology); Pseudomonas; Microbiology; Computational biology; Bacteria; Chemistry; Chromatography; Genetics","score_opus":0.00659374698729295,"score_gpt":0.15729527297041762,"score_spread":0.15070152598312467,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3014219950","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99563104,0.0005609229,0.00001908783,0.00013583498,0.000028373377,0.00033714052,0.0032743788,0.000005864977,0.0000073621786],"genre_scores_gemma":[0.9980889,0.00049731764,0.00016851256,0.00003440962,0.000017769236,0.0000106123925,0.0011507807,0.0000018570872,0.000029848536],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999247,0.00003799719,0.0003294114,0.00023955914,0.000034834324,0.00011118522],"domain_scores_gemma":[0.99956733,0.00007267372,0.00027745808,0.00005196966,0.0000025345712,0.00002803391],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000081943916,0.00011210038,0.00021183252,0.000013510184,0.00007879143,0.0000041068624,0.000101295605,0.00008577215,0.00008392875],"category_scores_gemma":[0.0000063776315,0.000053081218,0.000044459004,0.00011996223,0.0002363253,0.0000340897,0.00011539012,0.00004121428,0.0000046544315],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051783638,0.00005690277,0.0022384927,0.000017248794,0.000039926737,1.1372783e-7,0.0000731633,0.000004276792,0.9963024,0.000016890663,0.000035369034,0.0011633872],"study_design_scores_gemma":[0.0004070512,0.00012392187,0.11082792,0.000005201358,0.00007965228,0.000017886114,0.00017338186,0.000079037156,0.88758975,0.000025867717,0.00056171557,0.00010858517],"about_ca_topic_score_codex":0.0000024967512,"about_ca_topic_score_gemma":9.378338e-7,"teacher_disagreement_score":0.108712666,"about_ca_system_score_codex":0.000013476285,"about_ca_system_score_gemma":0.0000015832,"threshold_uncertainty_score":0.21645892},"labels":[],"label_agreement":null},{"id":"W3015879504","doi":"10.1128/aem.00190-20","title":"Ecological Importance of Cross-Feeding of the Intermediate Metabolite 1,2-Propanediol between Bacterial Gut Symbionts","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Università degli Studi di Parma; Government of Canada; Wellcome Trust","keywords":"Metabolite; Biology; Ecology; Propanediol; 1,3-Propanediol; Zoology; Chemistry; Biochemistry; Fermentation","score_opus":0.009315705357712523,"score_gpt":0.220668760328313,"score_spread":0.21135305497060047,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3015879504","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988271,0.00023519073,0.0000110589635,0.00010534585,0.00009574111,0.00022181094,0.00041229723,0.0000034431823,0.000088008266],"genre_scores_gemma":[0.99869484,0.00017439564,0.00010790361,0.00043490302,0.00018023158,0.0000062806944,0.000374682,0.000011302871,0.000015440497],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999064,0.0000385398,0.00034138397,0.0003164022,0.000026813665,0.00021282633],"domain_scores_gemma":[0.9995626,0.000012660455,0.00019879703,0.00015346798,0.0000046153823,0.00006781763],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000090359754,0.00014575988,0.00029180155,0.000010903453,0.000054730972,0.000004378434,0.00020208937,0.00020105606,0.000053446165],"category_scores_gemma":[0.000011235475,0.00010502925,0.00007654911,0.000029812116,0.00058308773,0.0000027139426,0.00036409832,0.00010564088,0.0000043154705],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000066510926,0.00002534505,0.1655178,0.000026236243,0.000034874174,2.1565252e-7,0.00006484618,9.076891e-7,0.83401895,0.00003169012,0.000047853784,0.00016478891],"study_design_scores_gemma":[0.00060862757,0.00017959616,0.4865303,0.0000033025108,0.000023689148,0.0000075768085,0.000059668928,4.819639e-7,0.50980407,0.000016523494,0.0026685174,0.000097637516],"about_ca_topic_score_codex":0.0000029497542,"about_ca_topic_score_gemma":0.0000016280829,"teacher_disagreement_score":0.32421485,"about_ca_system_score_codex":0.000008944874,"about_ca_system_score_gemma":0.000017275157,"threshold_uncertainty_score":0.42829683},"labels":[],"label_agreement":null},{"id":"W3016505883","doi":"10.1128/aem.00512-20","title":"Are Antimicrobial Interventions Associated with Heat-Resistant Escherichia coli on Meat?","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Beef Cattle Research Council","keywords":"Escherichia coli; Antimicrobial; Antibiotic resistance; Meat packing industry; Biology; Biotechnology; Food science; Heat resistance; Microbiology; Antibiotics; Genetics; Gene","score_opus":0.03258564150503865,"score_gpt":0.23628027944612812,"score_spread":0.20369463794108947,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3016505883","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99822026,0.00014792717,0.00010847974,0.00040173967,0.000055172695,0.00024254312,0.00042187868,0.0000178803,0.00038410546],"genre_scores_gemma":[0.99510825,0.000077776494,0.0001594187,0.0034664166,0.00007560839,0.00001924093,0.0009932367,0.000031308064,0.000068730995],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990117,0.00004946011,0.0001931761,0.0004767504,0.000030066749,0.00023885541],"domain_scores_gemma":[0.9996148,0.000009285634,0.00010544929,0.00017584507,0.000003267813,0.0000913998],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000422051,0.00021715855,0.00022449107,0.000014774321,0.000109019966,0.0000134384345,0.00013414341,0.00017949277,0.00003833332],"category_scores_gemma":[0.0000073394817,0.00019226625,0.00007369053,0.000037104423,0.00027170137,0.000002112911,0.00023210232,0.000106599364,0.00002225736],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052540045,0.00012786801,0.0018876925,0.000015198634,0.00014634636,0.0000055623846,0.00003189323,0.000038655577,0.9962226,0.00003248368,0.00089958345,0.000066705245],"study_design_scores_gemma":[0.0024094086,0.0013520696,0.020305974,0.000041395448,0.00008844486,0.000020916155,0.00026287214,0.000005855184,0.9535718,0.000006101739,0.021434559,0.00050059357],"about_ca_topic_score_codex":0.0000025448903,"about_ca_topic_score_gemma":0.000016845263,"teacher_disagreement_score":0.0426508,"about_ca_system_score_codex":0.00002444832,"about_ca_system_score_gemma":0.000008949676,"threshold_uncertainty_score":0.78403896},"labels":[],"label_agreement":null},{"id":"W3016661740","doi":"10.1128/aem.00227-20","title":"Novel Genus of Phages Infecting Streptococcus thermophilus: Genomic and Morphological Characterization","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Streptococcus thermophilus; Biology; Virulence; Microbiology; Bacteriophage; Population; Bacteria; Genetics; Gene; Escherichia coli; Lactobacillus","score_opus":0.008757525471796318,"score_gpt":0.1817874334692768,"score_spread":0.1730299079974805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3016661740","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988072,0.000039487393,0.00036654886,0.00012888109,0.000029744982,0.00020949499,0.00014864656,0.000015515712,0.00025446608],"genre_scores_gemma":[0.9987277,0.00012620848,0.0003098349,0.0006106477,0.000031564712,0.000010573434,0.00015042021,0.000011587188,0.000021483593],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99931085,0.000015199641,0.00018500818,0.00031271734,0.000018131801,0.00015808926],"domain_scores_gemma":[0.9997368,0.000020654406,0.00010257857,0.00007248343,4.9471583e-7,0.00006700053],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00003401206,0.00013723037,0.00017378754,0.000011722925,0.000079987614,0.00000967783,0.00006878874,0.00009107349,0.00097194966],"category_scores_gemma":[0.0000023919765,0.00012237995,0.000026110825,0.00003205956,0.00033291808,0.000054451488,0.00029045326,0.00010570033,0.00006099318],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018700472,0.000053436037,0.0069082375,0.0000056350236,0.000013478799,0.0000016008681,0.00032693922,0.000009371547,0.9849992,0.000008607985,0.000012323954,0.007642506],"study_design_scores_gemma":[0.0007146504,0.00018897172,0.7435952,0.0000043781715,0.00003201833,0.00016290744,0.00024742042,0.000059705297,0.24756637,0.000009942607,0.0071671284,0.00025134467],"about_ca_topic_score_codex":0.000024755658,"about_ca_topic_score_gemma":0.000001894809,"teacher_disagreement_score":0.7374328,"about_ca_system_score_codex":0.000025851732,"about_ca_system_score_gemma":0.0000013353103,"threshold_uncertainty_score":0.9999413},"labels":[],"label_agreement":null},{"id":"W3018644236","doi":"10.1128/aem.69.1.723.2003","title":"Effect of Exopolysaccharides on Phage-Host Interactions in <i>Lactococcus lactis</i>","year":2003,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Agriculture and Agri-Food Canada","funders":"","keywords":"Lactococcus lactis; Bacteriophage; Host (biology); Microbiology; Biology; Lactococcus; Bacteria; Genetics; Lactic acid; Gene; Escherichia coli","score_opus":0.004016057909213115,"score_gpt":0.21390780433926415,"score_spread":0.20989174643005104,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3018644236","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9896617,0.000030479863,0.000013331849,0.000027509855,0.00014256699,0.00031013504,0.000048024012,0.000011181699,0.009755093],"genre_scores_gemma":[0.99928147,0.000062954285,0.00007259679,0.00022344028,0.00000983365,0.0000443452,0.000028022063,0.00001534134,0.00026198983],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990683,0.00008849728,0.00023196351,0.00033575605,0.000028194096,0.00024726734],"domain_scores_gemma":[0.99954915,0.00014416709,0.000087821725,0.0001645321,3.6501777e-7,0.000053947886],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001305009,0.00019240075,0.00023840486,0.00005275749,0.00007153025,0.000008298577,0.00008726538,0.000069845206,0.0027584531],"category_scores_gemma":[0.000006488442,0.00016667662,0.000051890973,0.00006983862,0.00028633708,0.00007798121,0.00008299055,0.00020828762,0.0003387867],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000076036835,0.00014964938,0.005326763,0.0000060092675,0.000011077393,0.000003180851,0.00010148013,0.000017540924,0.9912027,0.00006986531,0.00016490262,0.0028707644],"study_design_scores_gemma":[0.0009027837,0.0003155859,0.020344714,0.000012699193,0.000019494855,0.000086928114,0.00013127393,0.00000271728,0.9556848,0.000024239756,0.022275642,0.00019911426],"about_ca_topic_score_codex":0.00012794568,"about_ca_topic_score_gemma":0.00008005052,"teacher_disagreement_score":0.035517924,"about_ca_system_score_codex":0.00011308891,"about_ca_system_score_gemma":0.0000020432915,"threshold_uncertainty_score":0.99815315},"labels":[],"label_agreement":null},{"id":"W3025838528","doi":"10.1128/aem.00778-20","title":"Ancestral Resurrection and Directed Evolution of Fungal Mesozoic Laccases","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme-mediated dye degradation","field":"Agricultural and Biological Sciences","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Horizon 2020 Framework Programme; European Commission; Ministerio de Ciencia, Innovación y Universidades","keywords":"Mesozoic; Laccase; Biology; Evolutionary biology; Paleontology; Enzyme; Biochemistry","score_opus":0.007914780754932658,"score_gpt":0.1538703041204772,"score_spread":0.14595552336554454,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3025838528","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99888617,0.00047959253,0.0000041168632,0.00021671194,0.000031793516,0.00010407256,0.00012136711,0.000032178552,0.00012397287],"genre_scores_gemma":[0.9992783,0.00018413358,0.000052846153,0.00009359601,0.00006518115,0.0000051576812,0.00031244697,7.1453167e-7,0.0000076134866],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995057,0.000030467896,0.00012063352,0.00020916303,0.000023929222,0.0001101372],"domain_scores_gemma":[0.9998226,0.000051921736,0.000059470054,0.000016472637,0.0000016858828,0.00004783289],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000039083014,0.00008219036,0.00011395467,0.0000058247083,0.00006002432,0.000004902572,0.000036138754,0.000083617306,0.000055465447],"category_scores_gemma":[0.00000558504,0.000039826296,0.000015205637,0.000055645163,0.00013849173,0.000036693924,0.000040835457,0.000062196785,0.0000063209272],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004288471,0.000021037353,0.01853078,0.0000037567333,0.0000061921346,4.4917167e-7,0.000042362506,0.0000013542953,0.97063833,0.00010308001,0.000103144805,0.010506619],"study_design_scores_gemma":[0.0004790999,0.000478961,0.81966805,0.000006377833,0.000028665676,0.000042584248,0.00074760406,0.00009407774,0.1742135,0.00021061084,0.0038086888,0.00022174648],"about_ca_topic_score_codex":0.000055546345,"about_ca_topic_score_gemma":0.000023239112,"teacher_disagreement_score":0.8011373,"about_ca_system_score_codex":0.000015064461,"about_ca_system_score_gemma":0.0000013201554,"threshold_uncertainty_score":0.16240692},"labels":[],"label_agreement":null},{"id":"W3033751467","doi":"10.1128/aem.00789-20","title":"Fish Skin and Gut Microbiomes Show Contrasting Signatures of Host Species and Habitat","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":140,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico; Ministério da Ciência, Tecnologia e Inovação; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Microbiome; Host (biology); Fish <Actinopterygii>; Habitat; Ecology; Zoology; Fishery; Genetics","score_opus":0.004921070335994014,"score_gpt":0.1760591441675952,"score_spread":0.17113807383160118,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3033751467","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99608386,0.0025655415,0.000033119766,0.00055364013,0.00002563406,0.00018759734,0.0004134419,0.000005373752,0.00013178034],"genre_scores_gemma":[0.99562943,0.0014727564,0.00041352087,0.0019049109,0.00007046538,0.000004147534,0.00043635585,0.000015745334,0.000052647665],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991528,0.000023960187,0.00018547065,0.00039596856,0.000016411965,0.0002254113],"domain_scores_gemma":[0.9997219,0.00002094306,0.00007622569,0.00008558904,0.0000028960708,0.00009248662],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004998271,0.00018198429,0.00024787517,0.000022064194,0.00008367835,0.000011394107,0.00006682781,0.00018800332,0.000023808574],"category_scores_gemma":[0.000005074797,0.00016942377,0.00002794578,0.000021819062,0.00054712826,0.0000028718146,0.00021480709,0.00009834138,0.0000016987092],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006718848,0.000023852266,0.0053159697,0.00005859007,0.000039948183,0.000001047557,0.00022615938,5.5741793e-7,0.9924887,0.000043919863,0.001028676,0.000705411],"study_design_scores_gemma":[0.0015542104,0.00047428047,0.099592924,0.000013450787,0.000038471717,0.000096569885,0.0009834626,0.0000041017183,0.8406133,0.000014403456,0.056263287,0.00035151362],"about_ca_topic_score_codex":0.000005379935,"about_ca_topic_score_gemma":0.00001461567,"teacher_disagreement_score":0.15187536,"about_ca_system_score_codex":0.0000054568854,"about_ca_system_score_gemma":0.000007684815,"threshold_uncertainty_score":0.6908901},"labels":[],"label_agreement":null},{"id":"W3037257883","doi":"10.1128/aem.00814-20","title":"Municipal Wastewater Surveillance Revealed a High Community Disease Burden of a Rarely Reported and Possibly Subclinical <i>Salmonella enterica</i> Serovar Derby Strain","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; National Science Foundation","keywords":"Salmonella enterica; Subclinical infection; Serotype; Salmonella; Disease surveillance; Strain (injury); Microbiology; Disease; Biology; Environmental health; Virology; Bacteria; Medicine; Internal medicine; Genetics","score_opus":0.024703941417517177,"score_gpt":0.20628266950488724,"score_spread":0.18157872808737008,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3037257883","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99742395,0.0003642741,0.0000013612379,0.0012966171,0.000027156531,0.000243996,0.0005603715,0.000030093237,0.000052190033],"genre_scores_gemma":[0.9970219,0.00041914213,0.00007891818,0.0012847089,0.00008448246,0.000013610307,0.0010715158,0.0000033191102,0.000022368964],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99823654,0.00041788656,0.0005219618,0.00045097328,0.000044209097,0.00032843353],"domain_scores_gemma":[0.99901384,0.00037959285,0.0002171409,0.0001280805,0.0000042348743,0.0002571178],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031250878,0.00023987895,0.0005350361,0.000007701541,0.00014883184,0.000011236519,0.00021984344,0.0001810576,0.00010964637],"category_scores_gemma":[0.000029869901,0.000118592296,0.00007557077,0.000069139336,0.00059118186,0.000027707903,0.00038007938,0.00027618703,0.000009640685],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036098433,0.00008783998,0.0798905,0.000018872543,0.000045023204,0.000012235697,0.00033768275,0.0000029498622,0.9172301,0.00001558714,0.000087037886,0.0019111685],"study_design_scores_gemma":[0.0013309397,0.0008456106,0.9845032,0.000018422887,0.00006917403,0.00011969207,0.0019297724,0.00005105586,0.0050779404,0.00047500414,0.005067681,0.0005114744],"about_ca_topic_score_codex":0.00037774385,"about_ca_topic_score_gemma":0.00003174041,"teacher_disagreement_score":0.9121522,"about_ca_system_score_codex":0.000011144883,"about_ca_system_score_gemma":0.0000033665992,"threshold_uncertainty_score":0.48360536},"labels":[],"label_agreement":null},{"id":"W3042379268","doi":"10.1128/aem.01341-20","title":"Correction for Maisuria et al., “Polyphenolic Extract from Maple Syrup Potentiates Antibiotic Susceptibility and Reduces Biofilm Formation of Pathogenic Bacteria”","year":2020,"lang":"en","type":"erratum","venue":"Applied and Environmental Microbiology","topic":"Plant-Derived Bioactive Compounds","field":"Chemistry","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Biofilm; Bacteria; Pathogenic bacteria; Microbiology; Polyphenol; Antibiotics; Chemistry; Biology; Food science; Biochemistry; Antioxidant; Genetics","score_opus":0.009033981835965828,"score_gpt":0.20008427912858368,"score_spread":0.19105029729261785,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3042379268","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98538506,0.0014514826,0.00008045506,0.00014379974,0.002216446,0.00036540307,0.009711909,0.000044946082,0.0006005248],"genre_scores_gemma":[0.95132893,0.0029949234,0.00039823222,0.00023602833,0.00018947937,0.00002063215,0.044181995,0.000049761216,0.0006000152],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983469,0.000045785877,0.0004631402,0.0007761433,0.000054288765,0.000313731],"domain_scores_gemma":[0.99904114,0.00014623076,0.00048429533,0.00023859859,0.00000573084,0.00008399513],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00009209889,0.00044228518,0.00064041547,0.000055108187,0.0001123719,0.000034018085,0.00016505583,0.0006402492,0.00021613891],"category_scores_gemma":[0.000011859678,0.0004380685,0.000109343986,0.000029413593,0.00037849374,0.00008540047,0.00022353126,0.00044683064,0.000010864178],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002297075,0.00009331217,0.00021261736,0.00017608164,0.00013900382,0.0000014255386,0.00017116104,2.6790548e-7,0.95262235,0.0000020573748,0.044257253,0.002094764],"study_design_scores_gemma":[0.0010088918,0.00014594004,0.0036946856,0.000105357416,0.00022335607,0.00009167742,0.00081020675,0.00011172432,0.91165745,0.00008824209,0.081482,0.0005804892],"about_ca_topic_score_codex":0.000061415216,"about_ca_topic_score_gemma":0.000024085313,"teacher_disagreement_score":0.04096492,"about_ca_system_score_codex":0.0001047487,"about_ca_system_score_gemma":0.000027959271,"threshold_uncertainty_score":0.9998071},"labels":[],"label_agreement":null},{"id":"W3044357454","doi":"10.1128/aem.01311-20","title":"Lysin LysMK34 of<i>Acinetobacter baumannii</i>Bacteriophage PMK34 Has a Turgor Pressure-Dependent Intrinsic Antibacterial Activity and Reverts Colistin Resistance","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Regina","funders":"Vlaamse regering; Universiteit Antwerpen; Cultural Affairs and Missions Sector, Ministry of Higher Education; Fonds Wetenschappelijk Onderzoek","keywords":"Acinetobacter baumannii; Bacteriophage; Lysin; Microbiology; Colistin; Acinetobacter; Biology; Turgor pressure; Polymyxin; Antimicrobial; Bacteria; Antibiotics; Escherichia coli; Genetics; Botany; Pseudomonas aeruginosa","score_opus":0.006503103858256571,"score_gpt":0.18028692214317096,"score_spread":0.1737838182849144,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3044357454","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978929,0.0006659757,0.00012946737,0.00019513832,0.0001027544,0.0003798537,0.00045011612,0.00001361454,0.00017017241],"genre_scores_gemma":[0.9977514,0.00053727196,0.00045673738,0.00039176788,0.00019729814,0.000009851466,0.00036243995,0.00003543724,0.0002577729],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984507,0.00008625513,0.00033196787,0.0007468679,0.00005731233,0.0003268805],"domain_scores_gemma":[0.99931926,0.000021287515,0.00022083124,0.0002987715,0.000006830808,0.00013301981],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00009730563,0.0003235723,0.00046492091,0.000025979822,0.00010851019,0.0000363332,0.00017515627,0.00027817156,0.00006698236],"category_scores_gemma":[0.000014626985,0.0003127615,0.000059787573,0.00003998517,0.0007053286,0.000011344991,0.00037501287,0.00013642802,0.000008203272],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011839677,0.00007422261,0.0057472545,0.00010498028,0.00011297762,0.0000066464104,0.000115636314,8.866873e-7,0.9913894,0.000018752133,0.0005628709,0.00068238674],"study_design_scores_gemma":[0.0017672591,0.0002825323,0.1451309,0.00002346552,0.00010315837,0.000048310027,0.000081020924,0.0000023854432,0.7998771,0.000015306872,0.052211788,0.000456749],"about_ca_topic_score_codex":0.0000131124825,"about_ca_topic_score_gemma":0.000018815985,"teacher_disagreement_score":0.1915123,"about_ca_system_score_codex":0.00001482176,"about_ca_system_score_gemma":0.000022711816,"threshold_uncertainty_score":0.99993247},"labels":[],"label_agreement":null},{"id":"W3044420264","doi":"10.1128/aem.01040-20","title":"Engineering Burkholderia xenovorans LB400 BphA through Site-Directed Mutagenesis at Position 283","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Chinese Academy of Sciences Key Project; Chinese Academy of Sciences; National Natural Science Foundation of China","keywords":"Mutagenesis; Biology; Site-directed mutagenesis; Chemistry; Microbiology; Mutation; Genetics; Mutant; Gene","score_opus":0.005300165376917112,"score_gpt":0.16477603457558118,"score_spread":0.15947586919866408,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3044420264","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973906,0.00009220474,0.000292571,0.0005003486,0.00010332732,0.00023926613,0.00020916079,0.000108994034,0.0010635041],"genre_scores_gemma":[0.9957486,0.00013880625,0.0013675775,0.0018990497,0.00006622942,0.000021986858,0.00051219866,0.000032355147,0.00021323796],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988924,0.000021015481,0.00021320074,0.00051282364,0.000035159093,0.0003253797],"domain_scores_gemma":[0.99965566,0.000023804147,0.00006342541,0.0001394127,6.335923e-7,0.00011706311],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00002880119,0.00024307634,0.00021887002,0.000014143029,0.00018694106,0.000020152129,0.00011193554,0.0001451183,0.0057066027],"category_scores_gemma":[0.0000018208672,0.00024508493,0.00006096421,0.00007845063,0.0001944946,0.00011316749,0.00032896368,0.00013872217,0.0017242217],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004086203,0.000048280246,0.0004740713,0.000007170112,0.000024972585,0.000007635537,0.00065159425,0.00015941565,0.9964087,0.0000106399475,0.0011615253,0.0010051456],"study_design_scores_gemma":[0.0010828616,0.0001595397,0.029782478,0.000009277429,0.00008828235,0.00029573796,0.00016918767,0.00035794234,0.79026526,0.000016929598,0.17708956,0.000682943],"about_ca_topic_score_codex":0.0000842097,"about_ca_topic_score_gemma":0.000019420313,"teacher_disagreement_score":0.20614341,"about_ca_system_score_codex":0.00016131291,"about_ca_system_score_gemma":0.000001736784,"threshold_uncertainty_score":0.9994274},"labels":[],"label_agreement":null},{"id":"W3048657004","doi":"10.1128/aem.00924-20","title":"<i>Arcobacter</i> Identification and Species Determination Using Raman Spectroscopy Combined with Neural Networks","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Spectroscopy Techniques in Biomedical and Chemical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; University of British Columbia","funders":"Agriculture and Agri-Food Canada; Government of Canada","keywords":"Arcobacter; Identification (biology); Raman spectroscopy; Artificial neural network; Biology; Computational biology; Biological system; Chemistry; Computer science; Artificial intelligence; Bacteria; Physics; Optics; Ecology; 16S ribosomal RNA; Genetics","score_opus":0.006974810195166564,"score_gpt":0.22104632995483736,"score_spread":0.2140715197596708,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3048657004","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9899263,0.0001474428,0.009330167,0.00023388556,0.000014345747,0.00017596425,0.000019440953,0.0000131122215,0.00013935658],"genre_scores_gemma":[0.9970997,0.00040858888,0.0013179727,0.00060755195,0.00009345291,0.000012487993,0.00041588553,0.0000132184305,0.000031125495],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99927825,0.000018114788,0.00012363067,0.00034346388,0.000038259972,0.00019826033],"domain_scores_gemma":[0.99975294,0.000008864991,0.000045060377,0.00009465477,0.0000025887969,0.00009591208],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000042654116,0.00012753347,0.00011905107,0.000012735582,0.000074236355,0.000020160142,0.000085021245,0.0001248876,0.000021831824],"category_scores_gemma":[0.0000035350026,0.00010581468,0.000016116128,0.00003103264,0.00048732714,0.0000034827904,0.00015494764,0.00011123267,0.000001193793],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018983179,0.000022961338,0.0015301651,0.000008643875,0.000011054125,0.0000013368665,0.00001603012,0.0000026206721,0.9973436,0.000030129731,0.000101712234,0.00074190664],"study_design_scores_gemma":[0.0005385997,0.0005404871,0.001560801,0.0000028897166,0.000014591461,0.00003944884,0.000058773767,0.0013508896,0.9926979,0.00003628171,0.002999112,0.00016022172],"about_ca_topic_score_codex":0.0000012578872,"about_ca_topic_score_gemma":5.310934e-7,"teacher_disagreement_score":0.008012194,"about_ca_system_score_codex":0.000014479366,"about_ca_system_score_gemma":0.0000037969169,"threshold_uncertainty_score":0.43149975},"labels":[],"label_agreement":null},{"id":"W3081765089","doi":"10.1128/aem.01569-20","title":"Salmonella enterica Serovar Typhimurium Temporally Modulates the Enteric Microbiota and Host Responses To Overcome Colonization Resistance in Swine","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Alberta Livestock and Meat Agency; Government of Canada; Public Health Agency; Public Health Agency of Canada","keywords":"Salmonella enterica; Salmonella; Biology; Microbiology; Colonization; Host (biology); Colonisation resistance; Serotype; Antibiotic resistance; Enterobacteriaceae; Bacteria; Antibiotics; Pathogenicity island; Microbiome; Escherichia coli; Gene; Genetics","score_opus":0.01037606931550757,"score_gpt":0.18045491646196474,"score_spread":0.17007884714645716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3081765089","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99013424,0.00065061543,0.00000489077,0.008635411,0.000037515605,0.00032563464,0.00013593298,0.000020248333,0.000055516757],"genre_scores_gemma":[0.9934701,0.00035605446,0.00013018578,0.0057150014,0.00006810049,0.000019303392,0.00015277693,0.0000027354185,0.000085778585],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988444,0.00012740384,0.00025555404,0.0004671356,0.000026407848,0.00027909438],"domain_scores_gemma":[0.9995944,0.00017254222,0.000075047035,0.00006197631,0.0000026294754,0.00009340673],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013307112,0.00018812761,0.00026297642,0.0000125537545,0.00011723354,0.000021189258,0.00016789515,0.00012155015,0.00006573968],"category_scores_gemma":[0.000013535079,0.00008426195,0.00002722965,0.00013837175,0.00020026133,0.000028035935,0.00024278849,0.00011416739,0.000032356154],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026935065,0.00003094402,0.07977531,0.0000049284054,0.000008727997,0.0000035241922,0.00028342308,0.0000013655128,0.91883963,0.000026155632,0.00037664955,0.00037999003],"study_design_scores_gemma":[0.00033180573,0.00027356742,0.96047616,0.000008914816,0.000009745076,0.000030722145,0.00039300643,0.000009086016,0.0077849,0.00007580047,0.030369394,0.00023691275],"about_ca_topic_score_codex":0.000047973415,"about_ca_topic_score_gemma":0.0000801629,"teacher_disagreement_score":0.91105473,"about_ca_system_score_codex":0.000025152793,"about_ca_system_score_gemma":0.0000022559689,"threshold_uncertainty_score":0.34361026},"labels":[],"label_agreement":null},{"id":"W3082173066","doi":"10.1128/aem.01278-20","title":"Magnetotactic Bacteria Accumulate a Large Pool of Iron Distinct from Their Magnetite Crystals","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Geomagnetism and Paleomagnetism Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Basic Energy Sciences; Office of Science; Institut de Physique du Globe de Paris; National Institute of General Medical Sciences; Canadian Institute for Advanced Research; U.S. Department of Energy; National Institutes of Health; National Science Foundation","keywords":"Magnetotactic bacteria; Biomineralization; Magnetite; Magnetosome; Bacteria; Biogeochemical cycle; Microorganism; Iron homeostasis; Greigite; Chemistry; Biophysics; Environmental chemistry; Biology; Biochemistry; Astrobiology; Metabolism; Paleontology","score_opus":0.0058134007670342875,"score_gpt":0.17833304162554062,"score_spread":0.17251964085850632,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3082173066","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944636,0.0027635233,0.00010114345,0.00028313682,0.000057960904,0.0002415711,0.0016377611,0.0000118084345,0.00043949153],"genre_scores_gemma":[0.99578977,0.0011078818,0.00028429623,0.00063223747,0.00012972429,0.000019584053,0.0019111772,0.000024814644,0.00010052967],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99880874,0.00004793154,0.00026925388,0.00051965856,0.000033657634,0.00032075561],"domain_scores_gemma":[0.99952996,0.000024368524,0.00011560512,0.00022199868,0.0000031383859,0.00010492126],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000047015605,0.00027354434,0.00031453214,0.000016546615,0.000080704966,0.000010104784,0.00015653911,0.00018251165,0.0004977464],"category_scores_gemma":[0.0000067350825,0.00024402309,0.00006837206,0.000030697334,0.00026202123,0.000003904105,0.00039927487,0.0000876933,0.000035529767],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001659909,0.000062511455,0.0062856427,0.000026974452,0.000048907383,0.0000027316266,0.00026310352,0.0000028951226,0.9911411,0.000016476628,0.00037156482,0.0016121265],"study_design_scores_gemma":[0.004621152,0.002511928,0.33157694,0.000016979217,0.00017066103,0.000051819767,0.0012743513,0.000040481715,0.507609,0.00015761338,0.15090775,0.0010613187],"about_ca_topic_score_codex":0.000020863437,"about_ca_topic_score_gemma":0.000016070926,"teacher_disagreement_score":0.48353207,"about_ca_system_score_codex":0.0000045586694,"about_ca_system_score_gemma":0.000007384209,"threshold_uncertainty_score":0.9950973},"labels":[],"label_agreement":null},{"id":"W3082553843","doi":"10.1128/aem.01397-20","title":"Dissolved Microcystin Release Coincident with Lysis of a Bloom Dominated by <i>Microcystis</i> spp. in Western Lake Erie Attributed to a Novel Cyanophage","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Aquatic Ecosystems and Phytoplankton Dynamics","field":"Environmental Science","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Windsor","funders":"National Institute of Environmental Health Sciences; Human Animal Bond Research Institute; Ohio Department of Education; National Institutes of Health; Bowling Green State University; National Science Foundation","keywords":"Microcystis; Bloom; Microcystin; Algal bloom; Microcystis aeruginosa; Biology; Cyanobacteria; Lytic cycle; Toxin; Biomass (ecology); Environmental science; Ecology; Microbiology; Phytoplankton; Nutrient; Bacteria; Virology","score_opus":0.003580720143588959,"score_gpt":0.161714588650962,"score_spread":0.15813386850737304,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3082553843","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99419594,0.00006950178,0.0023589903,0.00020130836,0.000017382583,0.00062295736,0.0024329326,0.000019234456,0.00008177782],"genre_scores_gemma":[0.9965446,0.00002925809,0.0013674968,0.0009694915,0.000009935926,0.000047946065,0.00091763365,0.00003057112,0.00008308626],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99835455,0.000041265776,0.0004792229,0.0006350359,0.000087460205,0.00040247268],"domain_scores_gemma":[0.99931246,0.000060451195,0.00019202134,0.00020677832,0.0000015413333,0.00022672089],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00012112698,0.00031590532,0.00056329375,0.000031639483,0.00006417235,0.000012550412,0.00022660535,0.00014756146,0.0005896195],"category_scores_gemma":[0.000005407766,0.0002792839,0.00004161986,0.00020049258,0.00028508133,0.00004755656,0.00032538583,0.00016404153,0.00021947864],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003062364,0.00023340959,0.052336667,0.000027552933,0.00003278776,0.000017713508,0.00051039626,0.00036934367,0.9452918,0.000004056394,0.00061060936,0.00025940582],"study_design_scores_gemma":[0.028614298,0.002834837,0.14900477,0.00026930144,0.00047159396,0.0007300742,0.0027584292,0.0022061882,0.5595799,0.00003164022,0.2497381,0.0037608526],"about_ca_topic_score_codex":0.0001850795,"about_ca_topic_score_gemma":0.0024785812,"teacher_disagreement_score":0.3857119,"about_ca_system_score_codex":0.00009947644,"about_ca_system_score_gemma":0.000007166828,"threshold_uncertainty_score":0.9999659},"labels":[],"label_agreement":null},{"id":"W3082760769","doi":"10.1128/aem.01728-20","title":"Improving Arsenic Tolerance of Pyrococcus furiosus by Heterologous Expression of a Respiratory Arsenate Reductase","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Arsenic contamination and mitigation","field":"Environmental Science","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"National Institute of General Medical Sciences; U.S. Department of Energy","keywords":"Pyrococcus furiosus; Arsenate; Arsenite; Biochemistry; Oxidoreductase; Heterologous expression; Biology; Chemistry; Heterologous; Arsenic; Enzyme; Recombinant DNA; Archaea; Gene","score_opus":0.004829747628660725,"score_gpt":0.1702357286761128,"score_spread":0.16540598104745208,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3082760769","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988774,0.00021208628,0.00018211191,0.000076574484,0.000026351325,0.00020883627,0.00014258048,0.000013410279,0.00026067023],"genre_scores_gemma":[0.9987507,0.00004112308,0.00031618122,0.00073611405,0.000011910373,0.000010558239,0.000101680205,0.00001070805,0.000021032047],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999119,0.00003756069,0.0002955275,0.00033053447,0.00005264314,0.00016476461],"domain_scores_gemma":[0.9995655,0.000023489609,0.00020966411,0.00012438388,9.752837e-7,0.00007601977],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000060781607,0.0001341512,0.00020598083,0.000015369142,0.000047803936,0.000002118087,0.00010914991,0.000101995014,0.00027614506],"category_scores_gemma":[0.0000053833082,0.00012742975,0.000036802292,0.000044008273,0.00046855392,0.00004896676,0.00020053903,0.00009785508,0.000020107522],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054208518,0.000062636485,0.0016150863,0.0000127992,0.000004423336,0.0000011502317,0.00048396835,0.000035364883,0.98698777,0.0000088578,0.00044203154,0.010291707],"study_design_scores_gemma":[0.00085095805,0.00019141671,0.0037422394,0.0000055905566,0.000013181725,0.000007863802,0.0004553037,0.000097523516,0.9899321,0.000023001425,0.0045334795,0.0001473056],"about_ca_topic_score_codex":0.000016434069,"about_ca_topic_score_gemma":0.0000026606226,"teacher_disagreement_score":0.010144401,"about_ca_system_score_codex":0.000032492215,"about_ca_system_score_gemma":0.0000035136402,"threshold_uncertainty_score":0.5196434},"labels":[],"label_agreement":null},{"id":"W3082873695","doi":"10.1128/aem.01195-20","title":"Active Packaging of Immobilized Zinc Oxide Nanoparticles Controls Campylobacter jejuni in Raw Chicken Meat","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Campylobacter; Campylobacter jejuni; Shelf life; Food science; Raw material; Food safety; Food packaging; Raw meat; Food Preservatives; Active packaging; Poultry meat; Food microbiology; Preservative; Chemistry; Biology; Bacteria","score_opus":0.010144803757438843,"score_gpt":0.17708610770131672,"score_spread":0.16694130394387788,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3082873695","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99827653,0.00023034285,0.0000017878424,0.00086714735,0.000023950046,0.00027949442,0.00009834424,0.000018820983,0.00020359365],"genre_scores_gemma":[0.9980414,0.00013697789,0.000037562753,0.0015189219,0.000043455413,0.000020208718,0.0001910167,0.0000020813095,0.000008408438],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99870616,0.00015444028,0.000340063,0.00042272662,0.00003208378,0.0003445049],"domain_scores_gemma":[0.9994208,0.000297411,0.000121896075,0.000054607666,0.0000023802536,0.00010285531],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013632118,0.00019263658,0.00046198705,0.000010296019,0.00005481339,0.000007435461,0.00015084291,0.00015723093,0.0002526679],"category_scores_gemma":[0.000016083537,0.00009065285,0.00006530481,0.00008087773,0.00030878498,0.000041083124,0.00014880448,0.0001391839,0.000029351953],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028454573,0.00008157402,0.052006572,0.000004340578,0.00002293995,0.0000026380467,0.0002044447,0.000005373317,0.94283026,0.00012194607,0.000023615376,0.004411733],"study_design_scores_gemma":[0.0014175052,0.00033668018,0.5296309,0.000009378887,0.000027408203,0.00002646215,0.0018871296,0.000022849203,0.46174583,0.0003433172,0.0042319493,0.00032060503],"about_ca_topic_score_codex":0.00008819151,"about_ca_topic_score_gemma":0.000057774876,"teacher_disagreement_score":0.48108447,"about_ca_system_score_codex":0.00001989952,"about_ca_system_score_gemma":0.0000026792268,"threshold_uncertainty_score":0.36967158},"labels":[],"label_agreement":null},{"id":"W3086596426","doi":"10.1128/aem.00944-20","title":"Bacillus subtilis Modulates Its Usage of Biofilm-Bound Iron in Response to Environmental Iron Availability","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Chromium effects and bioremediation","field":"Environmental Science","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Bacillus subtilis; Biofilm; Microbiology; Bacillaceae; Bacillales; Bacteria; Biology; Chemistry; Genetics","score_opus":0.006243320123603077,"score_gpt":0.1806760358106428,"score_spread":0.17443271568703972,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3086596426","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982913,0.00010054896,0.000007404672,0.0003935732,0.000044748987,0.0006465801,0.00028224342,0.0000167938,0.00021680142],"genre_scores_gemma":[0.9988127,0.00008691195,0.0001741082,0.00062907214,0.00002675223,0.000026464051,0.00016618276,0.000020827647,0.000057018402],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99828064,0.00010506213,0.00039328678,0.0007251755,0.00011016991,0.00038569036],"domain_scores_gemma":[0.9993742,0.00010634055,0.00010536771,0.00021648082,3.6877293e-7,0.00019725747],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00032344565,0.00028055685,0.0003346484,0.000045096553,0.00007365435,0.000010648224,0.00019715591,0.00018909677,0.002082656],"category_scores_gemma":[0.000017131455,0.0002605522,0.00005241037,0.00011530305,0.0005157338,0.00008626415,0.0004757036,0.00015774893,0.00056861166],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005897322,0.00016282995,0.040426075,0.000017809958,0.0000049042046,0.0000042500164,0.0010777785,0.00023639492,0.9535322,0.0000020272548,0.00009247198,0.0038535132],"study_design_scores_gemma":[0.0017469444,0.00075720117,0.5609181,0.0000070646042,0.000022365553,0.000014081919,0.00042523656,0.00032838612,0.42920378,0.000019474312,0.0060536177,0.00050377357],"about_ca_topic_score_codex":0.000059002938,"about_ca_topic_score_gemma":0.000025166895,"teacher_disagreement_score":0.5243284,"about_ca_system_score_codex":0.00028095837,"about_ca_system_score_gemma":0.0000048375846,"threshold_uncertainty_score":0.9999847},"labels":[],"label_agreement":null},{"id":"W3087372435","doi":"10.1128/aem.01505-20","title":"High-Throughput Generation of Product Profiles for Arabinoxylan-Active Enzymes from Metagenomes","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Universiteit Gent; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Arabinoxylan; Biorefinery; Husk; Chemistry; Food science; Biomass (ecology); Enzymatic hydrolysis; Oligosaccharide; Pulp and paper industry; Biotechnology; Enzyme; Biochemical engineering; Biochemistry; Biology; Biofuel; Botany; Engineering; Agronomy","score_opus":0.014294559846989269,"score_gpt":0.16958834539623255,"score_spread":0.15529378554924328,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3087372435","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962924,0.0012766278,0.00097157294,0.0002963124,0.00016928063,0.00038080328,0.00054198445,0.000041166655,0.00002983977],"genre_scores_gemma":[0.99566793,0.0003130183,0.0024309761,0.00014737589,0.00024159809,0.000026831434,0.0011459636,0.000012454962,0.0000138324995],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999511,0.000007998157,0.00012605278,0.00023974857,0.000015483594,0.00009970921],"domain_scores_gemma":[0.9998594,0.000009568628,0.000032202777,0.00006881811,0.0000015482192,0.000028446411],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000019879042,0.0001100687,0.00016259604,0.000014163905,0.000033193115,0.0000036368076,0.00004193277,0.00006518839,0.00009431895],"category_scores_gemma":[0.0000012274801,0.00009745072,0.000024869822,0.000018835468,0.0001176666,0.00003120877,0.000027101698,0.000050213745,0.000013781292],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029355868,0.000014988695,0.00006806384,0.000040059218,0.000058599493,8.6218485e-8,0.0002529682,0.00010751168,0.9947537,0.00009071448,0.0009980304,0.0035859107],"study_design_scores_gemma":[0.0003657659,0.000055987563,0.00041072842,9.0871106e-7,0.000024176445,0.0000012509588,0.00022041096,0.00015687119,0.9821795,0.00004259046,0.016432226,0.00010953535],"about_ca_topic_score_codex":0.000006662537,"about_ca_topic_score_gemma":3.4612864e-7,"teacher_disagreement_score":0.015434195,"about_ca_system_score_codex":0.000015426338,"about_ca_system_score_gemma":0.000002112283,"threshold_uncertainty_score":0.3973925},"labels":[],"label_agreement":null},{"id":"W3089529641","doi":"10.1128/aem.01452-20","title":"Burkholderia thailandensis Methylated Hydroxyalkylquinolines: Biosynthesis and Antimicrobial Activity in Cocultures","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada; National Institutes of Health; Cystic Fibrosis Foundation","keywords":"Burkholderia; Antimicrobial; Microbiology; Biosynthesis; Biology; Bacteria; Biochemistry; Enzyme; Genetics","score_opus":0.01044730092399299,"score_gpt":0.19716965815695908,"score_spread":0.1867223572329661,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3089529641","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99721885,0.00051027787,0.000019490819,0.0016676921,0.00005873152,0.00031721455,0.000038919803,0.000035209123,0.00013359827],"genre_scores_gemma":[0.9953928,0.00250741,0.00019865668,0.0016967999,0.00007119214,0.000016037577,0.000078629986,0.000018482864,0.0000199688],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991145,0.000030284647,0.00017591768,0.00042220406,0.000025485993,0.00023156864],"domain_scores_gemma":[0.9996837,0.00003558153,0.000050561906,0.0001042665,0.0000020599894,0.00012383882],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000055472385,0.00020386667,0.00038896187,0.00006532146,0.00007082243,0.000021189308,0.000034695975,0.000216507,0.00011070514],"category_scores_gemma":[0.000006623247,0.00017157831,0.000042296433,0.00009128508,0.00025831343,0.00006145563,0.00009473023,0.00018508332,0.00002053527],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016110165,0.000109136454,0.005168482,0.00003964912,0.000057493355,0.00001015308,0.0003206233,0.0000027223007,0.9883499,0.000009115612,0.00017884446,0.005592776],"study_design_scores_gemma":[0.0026052315,0.00022511293,0.034238663,0.00004041919,0.00012358215,0.00025114274,0.00053215335,0.00006040033,0.9546898,0.000011967653,0.006919697,0.0003018505],"about_ca_topic_score_codex":0.000046559246,"about_ca_topic_score_gemma":0.0000069794387,"teacher_disagreement_score":0.03366012,"about_ca_system_score_codex":0.000025962789,"about_ca_system_score_gemma":0.000007752412,"threshold_uncertainty_score":0.6996761},"labels":[],"label_agreement":null},{"id":"W3092758170","doi":"10.1128/aem.01928-20","title":"A Need for Improved Cellulase Identification from Metagenomic Sequence Data","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Metagenomics; Cellulase; Identification (biology); Categorization; Computational biology; Biology; Resource (disambiguation); Annotation; Computer science; Biotechnology; Data science; Bioinformatics; Cellulose; Gene; Genetics; Ecology; Artificial intelligence","score_opus":0.023730029071408622,"score_gpt":0.18595086280480644,"score_spread":0.16222083373339782,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3092758170","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9849845,0.0006563514,0.010460049,0.00068480487,0.0002162803,0.00044782652,0.0024174785,0.00010014739,0.0000325634],"genre_scores_gemma":[0.9923869,0.00019162892,0.0016776536,0.00039940557,0.00009105583,0.000010939869,0.005211288,0.000012539994,0.000018637542],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994723,0.0000052431255,0.00011716948,0.00029456467,0.000008089837,0.00010259098],"domain_scores_gemma":[0.9997475,0.000010134046,0.000022883461,0.00017416666,5.635199e-7,0.000044766985],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003400417,0.0000915575,0.00009708418,0.000008250147,0.000039606868,0.000010243015,0.00012824604,0.00007220319,0.00006236193],"category_scores_gemma":[0.0000011891356,0.000089385925,0.000014246753,0.00001581947,0.00006823708,0.00004168501,0.0000865145,0.0000559806,0.000054690885],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001808262,0.000006509259,0.000014621954,0.000018033721,0.000024631638,1.16638745e-7,0.00006519319,0.000015493095,0.995377,0.0000060764196,0.0009970239,0.0034572359],"study_design_scores_gemma":[0.0007517702,0.000028715238,0.00017591561,9.4993595e-7,0.000051115323,0.0000040151135,0.00032073032,0.022576194,0.8322832,0.00006058654,0.1435301,0.00021669168],"about_ca_topic_score_codex":0.000005698436,"about_ca_topic_score_gemma":4.6756088e-7,"teacher_disagreement_score":0.16309376,"about_ca_system_score_codex":0.000018591569,"about_ca_system_score_gemma":0.0000018243737,"threshold_uncertainty_score":0.36450523},"labels":[],"label_agreement":null},{"id":"W3094281114","doi":"10.1128/aem.02170-20","title":"Soil Characteristics Constrain the Response of Microbial Communities and Associated Hydrocarbon Degradation Genes during Phytoremediation","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institut National de la Recherche Scientifique; Natural Resources Canada","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Phytoremediation; Environmental remediation; Phenanthrene; Bioremediation; Environmental chemistry; Environmental science; Soil contamination; Soil water; Microbial biodegradation; Polycyclic aromatic hydrocarbon; Biodegradation; Microbial population biology; Bioaugmentation; Soil microbiology; Microorganism; Contamination; Chemistry; Biology; Bacteria; Ecology; Soil science","score_opus":0.007770883735801251,"score_gpt":0.16589356516173015,"score_spread":0.1581226814259289,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3094281114","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990061,0.000045471665,0.000008794338,0.00042201058,0.000036450503,0.00018948929,0.00023503989,0.000013738369,0.000042928885],"genre_scores_gemma":[0.99878156,0.00029098845,0.000041250707,0.0005463653,0.000021124726,0.0000034378672,0.0002905164,0.000008963575,0.000015776546],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992632,0.00012626135,0.00023560591,0.00017086069,0.00004715634,0.00015689699],"domain_scores_gemma":[0.9996148,0.00008090897,0.00016675111,0.000083757855,0.0000012382702,0.00005255975],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017826312,0.0001365208,0.00016791666,0.000014280958,0.00014129058,0.000011875872,0.00009805798,0.0001047238,0.00016400078],"category_scores_gemma":[0.000011809475,0.00010960523,0.000021639553,0.000048847847,0.0007417887,0.000037686696,0.00017626853,0.00010591004,0.000019850953],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015575143,0.000028348175,0.04546209,0.0000059378012,0.000013852658,4.3865919e-7,0.0011984982,0.0000036410422,0.9522857,0.000003363133,0.000043920983,0.000798469],"study_design_scores_gemma":[0.00092105987,0.000096779324,0.41236874,0.00000582596,0.00002865016,0.000016305376,0.0012591456,0.00010538862,0.5843115,0.0000074341883,0.0006789971,0.0002002081],"about_ca_topic_score_codex":0.000034057215,"about_ca_topic_score_gemma":0.000030175517,"teacher_disagreement_score":0.36797422,"about_ca_system_score_codex":0.00004422938,"about_ca_system_score_gemma":0.000004587959,"threshold_uncertainty_score":0.44695714},"labels":[],"label_agreement":null},{"id":"W3096338498","doi":"10.1128/aem.02001-20","title":"Analysis of Campylobacter jejuni Subtype Distribution in the Chicken Broiler Production Continuum: a Longitudinal Examination To Identify Primary Contamination Points","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Chinook Regional Hospital; Public Health Agency of Canada; University of Alberta; Alberta Health Services; Agriculture and Agri-Food Canada","funders":"Genome Alberta; Agriculture and Agri-Food Canada; Alberta Livestock and Meat Agency; Government of Canada; Canadian Poultry Research Council","keywords":"Contamination; Campylobacter jejuni; Broiler; Biology; Campylobacter; Microbiology; Food science; Bacteria; Genetics; Ecology","score_opus":0.014995304465144077,"score_gpt":0.20970700947063983,"score_spread":0.19471170500549576,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3096338498","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977512,0.00004914258,0.00003439857,0.0015928037,0.000039652223,0.00030958635,0.00015306672,0.000008672392,0.00006150572],"genre_scores_gemma":[0.99531645,0.000049875107,0.000010220765,0.0008598701,0.00006170712,0.000023859202,0.003668454,8.8916994e-7,0.00000865368],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99895453,0.00018738507,0.0002712637,0.0003629802,0.00005020922,0.00017363636],"domain_scores_gemma":[0.9996564,0.000119776414,0.00012353936,0.00005305831,0.000006682618,0.000040557294],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037852404,0.00012056161,0.00027440768,0.000023320219,0.000059144375,0.000010133027,0.00012667071,0.000108279055,0.00008638842],"category_scores_gemma":[0.00002360553,0.000054983568,0.00005364271,0.0003457822,0.000115585666,0.000045965437,0.00006779336,0.00009405899,0.000013726564],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049083203,0.000072385985,0.21054506,0.0000036774234,0.000041300464,6.411904e-7,0.00032883132,0.000004388961,0.7813154,0.00004120674,0.00010007733,0.0074979695],"study_design_scores_gemma":[0.0001355972,0.00014800609,0.99327916,0.0000025625327,0.000095402924,0.0000068411496,0.000499953,0.000008199541,0.0045849923,0.000026989537,0.0011138247,0.0000984782],"about_ca_topic_score_codex":0.00004781809,"about_ca_topic_score_gemma":0.00018915714,"teacher_disagreement_score":0.7827341,"about_ca_system_score_codex":0.000039073355,"about_ca_system_score_gemma":0.0000015846526,"threshold_uncertainty_score":0.22421649},"labels":[],"label_agreement":null},{"id":"W3097023432","doi":"10.1128/aem.02183-20","title":"Repeated Oral Vaccination of Cattle with Shiga Toxin-Negative Escherichia coli O157:H7 Reduces Carriage of Wild-Type E. coli O157:H7 after Challenge","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"National Institute of General Medical Sciences; National Institutes of Health; U.S. Department of Agriculture","keywords":"Carriage; Escherichia coli; Vaccination; Microbiology; Pathogen; Shiga toxin; Bloody diarrhea; Biology; Cattle Diseases; Diarrhea; Bacteria; Virology; Beef cattle; Enterobacteriaceae; Medicine; Gene; Animal science","score_opus":0.008827858380454032,"score_gpt":0.213064100932167,"score_spread":0.20423624255171297,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3097023432","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975147,0.0010989923,0.000019416006,0.00023398444,0.000030330899,0.00043350595,0.00016090342,0.000008288965,0.0004998492],"genre_scores_gemma":[0.9975974,0.0011020417,0.0006006224,0.00022195211,0.000051080227,0.00006411228,0.00025944124,0.000026670792,0.00007667545],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988275,0.00008393954,0.0002690044,0.00047713437,0.0000703109,0.00027208522],"domain_scores_gemma":[0.999509,0.000026587888,0.0001625332,0.00018954217,0.000023331644,0.000089002984],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009377084,0.000233488,0.0003739183,0.000027821205,0.00006177403,0.000005433617,0.00014440583,0.00018785286,0.000070237176],"category_scores_gemma":[0.000020881394,0.0002000586,0.00004541994,0.000101203324,0.00044275034,0.0000061886285,0.00029006097,0.00013913198,0.0000046651808],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010111055,0.00013419897,0.0026140716,0.000055852906,0.00022950092,0.0000026850005,0.0006805006,0.000017865455,0.99471927,0.000022157075,0.00021186094,0.0003009316],"study_design_scores_gemma":[0.0014654289,0.0017890646,0.026701242,0.0000127006115,0.000058982718,0.000004769354,0.0013307226,0.000009902414,0.9658977,0.000020008783,0.002437828,0.00027165696],"about_ca_topic_score_codex":0.000030621624,"about_ca_topic_score_gemma":0.00004044987,"teacher_disagreement_score":0.028821576,"about_ca_system_score_codex":0.000025379411,"about_ca_system_score_gemma":0.000036779275,"threshold_uncertainty_score":0.81581527},"labels":[],"label_agreement":null},{"id":"W3097176330","doi":"10.1128/aem.02182-20","title":"The Small RNAs PA2952.1 and PrrH as Regulators of Virulence, Motility, and Iron Metabolism in Pseudomonas aeruginosa","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; University of British Columbia","funders":"Canadian Institutes of Health Research; Killam Trusts; Government of Canada","keywords":"Pseudomonas aeruginosa; Virulence; Motility; Microbiology; Biology; Pseudomonadales; Metabolism; Quorum sensing; Bacteria; Cell biology; Biochemistry; Genetics; Gene","score_opus":0.0035820885572179478,"score_gpt":0.16251563905920738,"score_spread":0.15893355050198943,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3097176330","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960681,0.0030388397,0.000006446595,0.0005245102,0.000034775894,0.00020118055,0.000044465156,0.0000040012997,0.00007767478],"genre_scores_gemma":[0.99471897,0.0046256315,0.00018957039,0.00033379966,0.000039838134,0.000009876806,0.000054314372,0.000010752808,0.000017228109],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99915195,0.00003536598,0.00020251537,0.0003883327,0.000019866948,0.00020195176],"domain_scores_gemma":[0.99970084,0.000013634635,0.0000709398,0.00014972995,0.0000019343158,0.00006290903],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008816243,0.00015848406,0.00019817505,0.000018317955,0.0000631305,0.000009115067,0.000112981485,0.00026476505,0.0000052460723],"category_scores_gemma":[0.0000065434124,0.00012223152,0.0000219502,0.000030270972,0.0007553743,0.0000011973318,0.0003974162,0.00010331506,0.0000015422858],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009175631,0.000022873337,0.0035734316,0.000011899684,0.000018632725,8.3182334e-7,0.00005994597,0.0000011169504,0.98815393,0.0003711605,0.000015152921,0.007679265],"study_design_scores_gemma":[0.0009188844,0.00031850787,0.042396277,0.0000034433829,0.000023652487,0.00005668645,0.00028225663,0.000008593114,0.92714953,0.0003595387,0.028294932,0.00018769478],"about_ca_topic_score_codex":0.000019365401,"about_ca_topic_score_gemma":0.00002090315,"teacher_disagreement_score":0.061004397,"about_ca_system_score_codex":0.0000037305238,"about_ca_system_score_gemma":0.000007742536,"threshold_uncertainty_score":0.49844566},"labels":[],"label_agreement":null},{"id":"W3110511969","doi":"10.1128/aem.02181-20","title":"Creation of Universal Primers Targeting Nonconserved, Horizontally Mobile Genes: Lessons and Considerations","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Computational biology; Biology; Genetics; Gene; Mobile genetic elements; Genome","score_opus":0.0047152002601744195,"score_gpt":0.2156915746571245,"score_spread":0.21097637439695008,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3110511969","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99653226,0.001492795,0.0014901139,0.0001254532,0.000017142009,0.00013548465,0.00006352733,0.0000050913677,0.00013811106],"genre_scores_gemma":[0.9972667,0.0006124098,0.0016532642,0.00013531375,0.000034375258,0.000007934556,0.00027051204,0.000009024254,0.000010434913],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99956286,0.000010007849,0.00011041464,0.00020725279,0.000012985178,0.00009647442],"domain_scores_gemma":[0.9998476,0.000011387676,0.00003407498,0.00005569011,0.0000021624296,0.000049115177],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000026884818,0.00008974808,0.00010473738,0.0000109414505,0.000047994094,0.0000040061223,0.000027091755,0.000080977596,0.000020185893],"category_scores_gemma":[0.0000032499663,0.000094586256,0.000019086116,0.000012261417,0.00015298609,0.0000016929658,0.00007968246,0.000037918533,0.0000013647184],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018019662,0.000012884289,0.0010524545,0.0000108439335,0.000027961398,6.0488844e-7,0.0001457998,0.00020269037,0.99740404,0.000083052444,0.000087083055,0.00095458905],"study_design_scores_gemma":[0.0005616459,0.0002532274,0.0012454619,0.0000021434098,0.00002633311,0.000024266143,0.0012583886,0.000057206857,0.98955137,0.0000127044905,0.006863728,0.00014350621],"about_ca_topic_score_codex":0.000008077934,"about_ca_topic_score_gemma":0.0000036628621,"teacher_disagreement_score":0.007852629,"about_ca_system_score_codex":0.000004665208,"about_ca_system_score_gemma":0.000009348426,"threshold_uncertainty_score":0.38571155},"labels":[],"label_agreement":null},{"id":"W3110685493","doi":"10.1128/aem.02634-20","title":"New Family of Carbohydrate-Binding Modules Defined by a Galactosyl-Binding Protein Module from a Cellvibrio japonicus Endo-Xyloglucanase","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biochemistry; Carbohydrate-binding module; Isothermal titration calorimetry; Glycoside hydrolase; Biology; Xyloglucan; Context (archaeology); Escherichia coli; Homology modeling; Polysaccharide; Enzyme; Gene","score_opus":0.00569761381526698,"score_gpt":0.1463387900516072,"score_spread":0.1406411762363402,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3110685493","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997658,0.0008144607,0.00035687708,0.00011870465,0.00008796588,0.00028988312,0.00041813994,0.00007786666,0.00017808795],"genre_scores_gemma":[0.99783546,0.00018373741,0.0011735411,0.00008683918,0.000063195796,0.000012025331,0.0005497599,0.000029793318,0.000065678636],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990707,0.000017597396,0.00023537097,0.0003733823,0.00004187826,0.0002610474],"domain_scores_gemma":[0.9996706,0.000014474427,0.00005800261,0.00011079969,0.0000011046436,0.00014499435],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000306165,0.00022870049,0.000273261,0.000040208426,0.00005362217,0.000011295863,0.00011132557,0.0001804848,0.00015239144],"category_scores_gemma":[0.0000016998088,0.00022545567,0.00004673136,0.00006372095,0.00009795886,0.00004293904,0.000091830065,0.00017491152,0.00007629699],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036833473,0.000022236713,0.00013783142,0.00004053276,0.00004933866,0.0000016681441,0.00018263632,0.000052744268,0.9969738,0.000013546332,0.0012643244,0.0012244673],"study_design_scores_gemma":[0.0008720475,0.00006321562,0.00012312472,0.000008802104,0.000023942648,0.000003313155,0.00038378447,0.0003331666,0.9919502,0.000024311192,0.0059651574,0.00024890047],"about_ca_topic_score_codex":0.0001338792,"about_ca_topic_score_gemma":0.0000021715607,"teacher_disagreement_score":0.005023606,"about_ca_system_score_codex":0.000056994242,"about_ca_system_score_gemma":0.0000070976307,"threshold_uncertainty_score":0.91938156},"labels":[],"label_agreement":null},{"id":"W3110815639","doi":"10.1128/aem.02308-20","title":"Isolation and Characterization of Rhizophydiales (Chytridiomycota), Obligate Parasites of Planktothrix agardhii in a Laurentian Great Lakes Embayment","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Windsor","funders":"National Institute of Environmental Health Sciences; Department of Natural Resources; National Institutes of Health; Bowling Green State University; National Science Foundation; Ohio Department of Natural Resources","keywords":"Chytridiomycota; Obligate; Biology; Cyanobacteria; Bloom; Algal bloom; Isolation (microbiology); Ecology; Chytridiomycosis; Food web; Nutrient; Phytoplankton; Microbiology; Bacteria; Amphibian; Ascomycota; Trophic level","score_opus":0.006212810044670235,"score_gpt":0.1739391250098933,"score_spread":0.16772631496522308,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3110815639","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99924684,0.000074417236,0.000036062243,0.00013452135,0.000017661523,0.00020404803,0.0001407047,0.000006111446,0.00013961714],"genre_scores_gemma":[0.9985116,0.00034641617,0.00015129586,0.00023612705,0.000010373577,0.000007727652,0.00072227576,0.0000070976084,0.0000070922392],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99926084,0.00007836464,0.0002591612,0.00023079447,0.00002213168,0.00014872232],"domain_scores_gemma":[0.9996881,0.000041139527,0.00013819242,0.00008918687,6.9365814e-7,0.00004269048],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000690327,0.00013006807,0.0002742625,0.000031399148,0.000050307644,0.0000025097409,0.00008938982,0.00012754397,0.00079890277],"category_scores_gemma":[0.000002032152,0.00012716818,0.000022264057,0.00006223268,0.0004911569,0.000047608355,0.00019173246,0.00010421838,0.000017132948],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011959196,0.00005537595,0.081671104,0.000020154725,0.000013087666,5.755856e-7,0.00084139395,0.000022803759,0.9163203,0.000057741774,0.000034524055,0.0008433275],"study_design_scores_gemma":[0.0016825236,0.0005341169,0.6999456,0.00002068985,0.000040100847,0.000021544165,0.00031823202,0.00014249524,0.29309407,0.00040374376,0.0034569926,0.000339888],"about_ca_topic_score_codex":0.000042583775,"about_ca_topic_score_gemma":0.0001600514,"teacher_disagreement_score":0.6232263,"about_ca_system_score_codex":0.000017343891,"about_ca_system_score_gemma":0.0000027428223,"threshold_uncertainty_score":0.8747425},"labels":[],"label_agreement":null},{"id":"W3111693584","doi":"10.1128/aem.01922-20","title":"Blastomyces dermatitidis Environmental Prevalence in Minnesota: Analysis and Modeling Using Soil Collected at Basal and Outbreak Sites","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Centers for Disease Control and Prevention; National Institutes of Health","keywords":"Blastomyces dermatitidis; Blastomycosis; Blastomyces; Outbreak; Biology; Ecology; Veterinary medicine; Virology; Medicine; Immunology","score_opus":0.013539608284559607,"score_gpt":0.20407338952863144,"score_spread":0.19053378124407183,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3111693584","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973735,0.0019921507,0.00008273306,0.00016062909,0.000007817472,0.00019162812,0.00012043945,0.000010748628,0.00006035216],"genre_scores_gemma":[0.9964378,0.0026218751,0.000360129,0.00040341064,0.000018798031,0.000011823636,0.00010650092,0.000010170339,0.000029518294],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992006,0.000022510545,0.00020012066,0.00036108552,0.000030687283,0.00018502193],"domain_scores_gemma":[0.99977154,0.000037668364,0.000040534112,0.00006341297,8.818113e-7,0.00008596133],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000036135778,0.00016909212,0.00034418967,0.000083441526,0.00016258462,0.000008412817,0.000020397532,0.00008653878,0.00007537922],"category_scores_gemma":[0.0000031903833,0.00015273002,0.000033340188,0.00009713186,0.0002749779,0.00003747782,0.00019565203,0.00009840546,0.0000042537104],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055987155,0.0000416703,0.34491533,0.0000430398,0.00014077924,0.000004970061,0.0007007166,0.00022121675,0.65377116,0.000001338817,0.000010184362,0.00009361086],"study_design_scores_gemma":[0.0054375995,0.0006388178,0.8063732,0.000055379813,0.002280597,0.00051590084,0.0059545604,0.1269625,0.05040781,0.000033308766,0.0004137979,0.000926528],"about_ca_topic_score_codex":0.0000400547,"about_ca_topic_score_gemma":0.0000686336,"teacher_disagreement_score":0.60336334,"about_ca_system_score_codex":0.00006430262,"about_ca_system_score_gemma":0.0000034459779,"threshold_uncertainty_score":0.62281495},"labels":[],"label_agreement":null},{"id":"W3113907563","doi":"10.1128/aem.02312-20","title":"No Endospore Formation Confirmed in Members of the Phylum <i>Proteobacteria</i>","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Phylum; Biology; Proteobacteria; Microbiology; Bacteria; Genetics; 16S ribosomal RNA","score_opus":0.005016808136770918,"score_gpt":0.15404911386646444,"score_spread":0.14903230572969353,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3113907563","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948093,0.000013476938,0.000003859853,0.00027844802,0.00005119041,0.00030744908,0.000060398637,0.000006543604,0.0044692955],"genre_scores_gemma":[0.99767715,0.00003740938,0.000066067376,0.0020377294,0.000012313694,0.0000137144825,0.000114096176,0.0000063071693,0.000035217665],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99930775,0.00009312193,0.0002080155,0.00018429421,0.00002123034,0.00018558827],"domain_scores_gemma":[0.9996825,0.000034030785,0.00010204839,0.00014346206,4.9776685e-7,0.00003749601],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007340318,0.00011766981,0.00018521344,0.000008512312,0.00008022232,0.000002154509,0.00021897996,0.00012193446,0.0029404075],"category_scores_gemma":[0.000004610527,0.00009150057,0.000032841384,0.000057376255,0.000631516,0.000043437158,0.00040535128,0.0001910077,0.00012149232],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000636617,0.000041318734,0.010198633,0.000009476099,0.000005017161,3.9304553e-7,0.0005765027,0.00003451046,0.98796636,0.000043305823,0.0008255487,0.00023524996],"study_design_scores_gemma":[0.0037587548,0.00046394256,0.27869055,0.000017093222,0.000038744878,0.00006982822,0.0012698418,0.0002517639,0.56022424,0.00058970763,0.15396437,0.0006611431],"about_ca_topic_score_codex":0.00007803125,"about_ca_topic_score_gemma":0.00013975812,"teacher_disagreement_score":0.42774212,"about_ca_system_score_codex":0.000028088294,"about_ca_system_score_gemma":0.0000028288498,"threshold_uncertainty_score":0.99797106},"labels":[],"label_agreement":null},{"id":"W3124042230","doi":"10.1128/aem.02914-20","title":"Monitoring Microbial Populations and Antibiotic Resistance Gene Enrichment Associated with Arctic Waste Stabilization Ponds","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Polar Knowledge Canada","keywords":"Effluent; Aquatic ecosystem; Arctic; Environmental science; Amplicon sequencing; Ecosystem; Ecology; Biology; Environmental engineering; Gene; 16S ribosomal RNA; Genetics","score_opus":0.014439601612865786,"score_gpt":0.22124453787696327,"score_spread":0.2068049362640975,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3124042230","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984525,0.0004021075,0.00009247653,0.00017144054,0.00006866549,0.0001907608,0.00006036065,0.000021997734,0.00053973275],"genre_scores_gemma":[0.99755806,0.0004067094,0.0010798733,0.00027255886,0.000028222626,0.000003489642,0.00022234581,0.000023165943,0.00040558373],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986977,0.000057850575,0.00021800105,0.0005477296,0.0000875246,0.0003911754],"domain_scores_gemma":[0.99955183,0.000040721345,0.00008357905,0.00015997446,0.0000011512102,0.00016271543],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000088377135,0.00023880083,0.00022261821,0.000021156291,0.00024656096,0.000030703195,0.000070287344,0.00011181023,0.00027750627],"category_scores_gemma":[0.0000072088983,0.00021329618,0.000024760282,0.00009469029,0.0005649046,0.00009906095,0.00027200452,0.0001462076,0.00004105785],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021572241,0.00018128527,0.15015377,0.000010524097,0.000025282732,0.000014783915,0.00010474636,0.000098979806,0.8488359,0.000039840117,0.000017988363,0.0004953465],"study_design_scores_gemma":[0.0013776191,0.00009928748,0.4297922,0.000061928265,0.000109709144,0.00013636268,0.00046272727,0.000045288805,0.56668925,0.00021235707,0.0005264247,0.00048684017],"about_ca_topic_score_codex":0.000010885937,"about_ca_topic_score_gemma":0.00003149202,"teacher_disagreement_score":0.2821466,"about_ca_system_score_codex":0.00021039571,"about_ca_system_score_gemma":0.000004841507,"threshold_uncertainty_score":0.8697966},"labels":[],"label_agreement":null},{"id":"W3125626694","doi":"10.1128/aem.02612-20","title":"Resistance Determinants and Their Genetic Context in Enterobacteria from a Longitudinal Study of Pigs Reared under Various Husbandry Conditions","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency; Agriculture and Agri-Food Canada","funders":"Government of Canada","keywords":"Animal husbandry; Biology; Context (archaeology); Antibiotic resistance; Biotechnology; Agriculture; Productivity; Antimicrobial; Bacteria; Resistance (ecology); Animal welfare; Livestock; Microbiology; Ecology; Genetics; Economics; Economic growth","score_opus":0.007215907755475545,"score_gpt":0.20653999732124975,"score_spread":0.19932408956577422,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3125626694","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998151,0.001154019,0.00006714473,0.000010862054,0.000046878293,0.00019705361,0.00033238533,0.0000025904042,0.000038079917],"genre_scores_gemma":[0.9987998,0.00042481683,0.00015991346,0.00008247212,0.000020207217,0.000012133914,0.00041265233,0.000014515807,0.00007351666],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99901515,0.000067269,0.00025931653,0.00046408272,0.000019709727,0.00017447896],"domain_scores_gemma":[0.99960417,0.000024417142,0.00009026371,0.000239393,0.0000040891005,0.00003766905],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003532768,0.00016666751,0.00026675855,0.000021719045,0.000049613864,0.000010793022,0.000075725446,0.00013214962,0.00004356229],"category_scores_gemma":[0.0000033471613,0.00015745088,0.000023004133,0.000024374001,0.0003324544,0.0000029557768,0.00017036911,0.000063769105,0.0000017682262],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010511065,0.00018942561,0.25713268,0.0000070294595,0.00004750117,0.000011365492,0.00021755183,7.382722e-7,0.742088,0.000010384366,0.000016013772,0.00017417698],"study_design_scores_gemma":[0.0015717846,0.00015127046,0.9084515,0.00001970992,0.000021334936,0.000047782683,0.0031346618,7.815619e-7,0.085998654,0.00013660108,0.0002993761,0.00016654439],"about_ca_topic_score_codex":0.000041722764,"about_ca_topic_score_gemma":0.0010574434,"teacher_disagreement_score":0.65608937,"about_ca_system_score_codex":0.000015565665,"about_ca_system_score_gemma":0.000013308727,"threshold_uncertainty_score":0.64206606},"labels":[],"label_agreement":null},{"id":"W3129296109","doi":"10.1128/aem.00078-21","title":"Seafloor Incubation Experiment with Deep-Sea Hydrothermal Vent Fluid Reveals Effect of Pressure and Lag Time on Autotrophic Microbial Communities","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"National Oceanic and Atmospheric Administration; Schmidt Ocean Institute; Center for Dark Energy Biosphere Investigations; Joint Institute for the Study of the Atmosphere and Ocean; Gordon and Betty Moore Foundation; National Science Foundation","keywords":"Hydrothermal vent; Seafloor spreading; Autotroph; Oceanography; Hydrothermal circulation; Incubation; Deep sea; Environmental science; Lag; Ecology; Biology; Geology; Paleontology; Bacteria","score_opus":0.0026078221221300098,"score_gpt":0.16666823855177212,"score_spread":0.16406041642964211,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3129296109","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99748206,0.0009381859,0.000010124384,0.000041117386,0.000026439366,0.0003277583,0.000055593162,0.000012130336,0.0011066077],"genre_scores_gemma":[0.99894094,0.00017991927,0.00016262876,0.00014902344,0.00001587925,0.000031736618,0.00024543208,0.00002067974,0.0002537751],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990515,0.00017572076,0.00019216277,0.00029047063,0.00006174319,0.00022839654],"domain_scores_gemma":[0.9995698,0.00006542234,0.0000881616,0.00020994198,9.216375e-7,0.000065784276],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00013286636,0.0002178707,0.00030114004,0.000022091413,0.00013106196,0.000010269233,0.00008670583,0.0001345461,0.001320838],"category_scores_gemma":[8.699032e-7,0.00016382492,0.000029138446,0.000041121744,0.00052888633,0.000032289703,0.00022754684,0.00014992632,0.000063718086],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021339674,0.000114126946,0.0027666453,0.00002951017,0.00008396115,0.0000048910197,0.00068929774,0.0014616536,0.9936481,0.000034604447,0.000041365827,0.0009124151],"study_design_scores_gemma":[0.002925626,0.0017218062,0.007333328,0.000050459803,0.00018506625,0.00019419941,0.00035351346,0.00042709918,0.98365504,0.000083280036,0.0026024166,0.00046819253],"about_ca_topic_score_codex":0.00003652248,"about_ca_topic_score_gemma":0.000004567142,"teacher_disagreement_score":0.009993119,"about_ca_system_score_codex":0.000040217838,"about_ca_system_score_gemma":0.0000029869173,"threshold_uncertainty_score":0.99959207},"labels":[],"label_agreement":null},{"id":"W3129835334","doi":"10.1128/aem.02975-20","title":"The Tail-Specific Protease Is Important for Legionella pneumophila To Survive Thermal Stress in Water and inside Amoebae","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; McGill University","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Legionella pneumophila; Microbiology; Limit (mathematics); Biology; Environmental science; Bacteria; Mathematics","score_opus":0.006915726827165153,"score_gpt":0.20463997163105907,"score_spread":0.19772424480389392,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3129835334","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99688995,0.0012627426,0.000016966336,0.0011079382,0.000040529165,0.00047159987,0.00011347226,0.0000024587134,0.00009434703],"genre_scores_gemma":[0.9967308,0.0015684098,0.000068365356,0.0006353223,0.000086583925,0.00012552735,0.0004891166,0.000018012055,0.00027788506],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989409,0.000037389313,0.0001819272,0.00045008893,0.000031505788,0.00035818113],"domain_scores_gemma":[0.9996615,0.000022461447,0.000025659898,0.00020351182,0.0000056752524,0.0000811955],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013546685,0.00015069287,0.00013913911,0.000020602829,0.00016264252,0.000027331564,0.00009527691,0.0001290437,0.000008275983],"category_scores_gemma":[0.0000032042915,0.000100193596,0.000033810004,0.000023292492,0.00024014285,0.0000023256434,0.00029168683,0.0000932284,0.0000060497814],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014900233,0.0000522824,0.0059961155,0.000009344933,0.000022694696,0.000009733692,0.00018020197,0.000004536538,0.9918674,0.00005135083,0.0003909496,0.0012663399],"study_design_scores_gemma":[0.00067662215,0.00010074255,0.0032875857,0.0000040175523,0.000004226506,0.000040662362,0.0006104586,0.0000033518038,0.9108466,0.00007914215,0.08418335,0.0001632401],"about_ca_topic_score_codex":0.00001405466,"about_ca_topic_score_gemma":0.000042283238,"teacher_disagreement_score":0.0837924,"about_ca_system_score_codex":0.0000137281995,"about_ca_system_score_gemma":0.000014723645,"threshold_uncertainty_score":0.40857762},"labels":[],"label_agreement":null},{"id":"W3131029063","doi":"10.1128/aem.03027-20","title":"Transcriptome Analysis of Listeria monocytogenes Exposed to Beef Fat Reveals Antimicrobial and Pathogenicity Attenuation Mechanisms","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Kane Biotech (Canada); Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Government of Canada","keywords":"Listeria monocytogenes; Biology; Pathogen; Microbiology; Antimicrobial; Pathogenicity; Transcriptome; Listeria; Foodborne pathogen; Strain (injury); Food microbiology; Bacteria; Food science; Biotechnology; Gene; Genetics; Gene expression","score_opus":0.023862857907361697,"score_gpt":0.2440611796784016,"score_spread":0.2201983217710399,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3131029063","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952871,0.0003877136,0.0030969908,0.00006458381,0.000086947526,0.00021659759,0.0008142673,0.0000060345637,0.00003976918],"genre_scores_gemma":[0.99364394,0.00038812333,0.0030775554,0.0007884304,0.000038483624,0.000019857795,0.0019706169,0.000019855057,0.0000531323],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987457,0.00007389726,0.00032332985,0.00059806847,0.00003598322,0.00022306334],"domain_scores_gemma":[0.9994964,0.000010958893,0.000096475145,0.00030509898,0.000009136696,0.00008193264],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010703667,0.00020816918,0.00038552523,0.000073286465,0.000072798575,0.000012634815,0.000107218286,0.00021778599,0.000035188852],"category_scores_gemma":[0.0000048051807,0.00021925493,0.0000997368,0.00011316635,0.00015214605,0.000003855779,0.00032078248,0.00004313753,0.0000025861316],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015856764,0.00006180229,0.0020920201,0.000015224061,0.0004165289,0.0000024253338,0.00014814832,0.000038307946,0.99604243,0.00010605054,0.000028675202,0.00088984286],"study_design_scores_gemma":[0.0005716055,0.00012934371,0.008489545,0.0000037102557,0.00032829095,0.000040501844,0.00017719301,0.000004147354,0.9889653,0.000036121688,0.0010243728,0.00022990159],"about_ca_topic_score_codex":0.0000049992955,"about_ca_topic_score_gemma":0.00002062295,"teacher_disagreement_score":0.0070771407,"about_ca_system_score_codex":0.000019592457,"about_ca_system_score_gemma":0.000009622248,"threshold_uncertainty_score":0.89409566},"labels":[],"label_agreement":null},{"id":"W3133256740","doi":"10.1128/aem.00088-21","title":"Comparison of Strategies for Isolating Anaerobic Bacteria from the Porcine Intestine","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Agriculture and Agri-Food Canada","funders":"University of Alberta; Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Alberta Livestock and Meat Agency; Government of Canada","keywords":"Bacteria; Biology; Microbiology; Cecum; Anaerobic bacteria; Isolation (microbiology); Fastidious organism; Bacillus (shape); Zoology; Ecology; Genetics","score_opus":0.012165439698651456,"score_gpt":0.251741657795679,"score_spread":0.2395762180970275,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3133256740","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970393,0.0012523868,0.0010083715,0.00014265771,0.00005784585,0.00014845391,0.00027841498,0.0000032797032,0.00006928727],"genre_scores_gemma":[0.9928372,0.00011992602,0.0037051383,0.0003726882,0.00008422046,0.0000107304795,0.002826978,0.000011507224,0.000031645694],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993354,0.00002497858,0.00021135052,0.00025634284,0.000011127445,0.00016077736],"domain_scores_gemma":[0.9996723,0.000038495098,0.0000935292,0.00016450507,0.0000052290693,0.000025954712],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000053038657,0.00011482409,0.0001909743,0.000006603279,0.00008427482,0.000008797985,0.00007833113,0.00010718348,0.000044751072],"category_scores_gemma":[0.0000049129926,0.00009007959,0.000036694615,0.000017944218,0.0001639277,0.0000016264387,0.0001211903,0.000063263054,0.000002180927],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047084122,0.000057560846,0.008751921,0.000011690454,0.000033967517,1.8605527e-7,0.00012003055,0.0000070809792,0.9896344,0.00016047702,0.00048447633,0.0006911037],"study_design_scores_gemma":[0.0008284995,0.00024379544,0.03249647,0.000010085831,0.00003206287,0.000023335739,0.0029606011,0.000013881996,0.9485659,0.00013927894,0.014535812,0.00015027855],"about_ca_topic_score_codex":0.000019890893,"about_ca_topic_score_gemma":0.000049508802,"teacher_disagreement_score":0.041068524,"about_ca_system_score_codex":0.000006608658,"about_ca_system_score_gemma":0.0000282792,"threshold_uncertainty_score":0.36733392},"labels":[],"label_agreement":null},{"id":"W3134214717","doi":"10.1128/aem.00127-21","title":"Cranberry-Derived Proanthocyanidins Potentiate β-Lactam Antibiotics against Resistant Bacteria","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Ocean Spray; Fonds de Recherche du Québec - Santé; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Lactam; Bacteria; Enterobacteriaceae; Microbiology; Antibiotics; Biology; Chemistry; Escherichia coli; Biochemistry; Stereochemistry; Gene; Genetics","score_opus":0.0044104338444851,"score_gpt":0.1829000492108559,"score_spread":0.17848961536637079,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3134214717","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972355,0.00060166046,0.00019356237,0.000087492735,0.00019922339,0.00020504091,0.00023343212,0.000018374316,0.0012257308],"genre_scores_gemma":[0.99204355,0.002030177,0.0022905127,0.00057379244,0.00012452492,0.0000021107046,0.00229299,0.000047153353,0.00059516024],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998399,0.000069845766,0.0003153764,0.0007315086,0.000046905898,0.00043736893],"domain_scores_gemma":[0.9993275,0.000010873932,0.00011962466,0.00042635255,0.000008882986,0.00010678083],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00008971951,0.00030241098,0.00029868903,0.00002709361,0.00016533214,0.00003969356,0.00015830561,0.00031195453,0.00009767138],"category_scores_gemma":[0.00000992283,0.00029972536,0.000082273866,0.00004554497,0.00042663756,0.0000049582754,0.00033830304,0.00012675738,0.000041795603],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014823864,0.00012341888,0.0031804708,0.00002603301,0.000096764,0.00002802276,0.000029062812,0.0000025404938,0.99535245,0.0000785035,0.0003239522,0.000610548],"study_design_scores_gemma":[0.00079721503,0.00009843163,0.03709789,0.000014608803,0.00003532124,0.00011634519,0.0003226107,0.0000027710835,0.93426585,0.000030653802,0.026834205,0.00038408986],"about_ca_topic_score_codex":0.000002465187,"about_ca_topic_score_gemma":0.0000120555915,"teacher_disagreement_score":0.061086588,"about_ca_system_score_codex":0.000031492767,"about_ca_system_score_gemma":0.00003979947,"threshold_uncertainty_score":0.99994546},"labels":[],"label_agreement":null},{"id":"W3134991961","doi":"10.1128/aem.00242-21","title":"Local Adaptation of Legionella pneumophila within a Hospital Hot Water System Increases Tolerance to Copper","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ste. Anne's Hospital; McGill University; Polytechnique Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Legionella pneumophila; Legionella; Biofilm; Microbiology; Adaptation (eye); Copper; Legionnaires' disease; Biology; Bacteria; Chemistry","score_opus":0.004784987152684955,"score_gpt":0.18499958048532308,"score_spread":0.18021459333263812,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3134991961","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984788,0.0003726422,0.00058046577,0.00010070049,0.00006079901,0.00016557424,0.00006441796,0.0000052842693,0.00017132903],"genre_scores_gemma":[0.9986185,0.00011231756,0.00019691454,0.00021226436,0.000062287494,0.00002520063,0.00062692247,0.000015314288,0.00013027334],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99914813,0.0000360018,0.00018302264,0.0003682344,0.000043990214,0.00022060508],"domain_scores_gemma":[0.9996969,0.000007094194,0.000034225133,0.00017367382,0.000008833528,0.0000792677],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000067127185,0.00013440804,0.00017450377,0.000023375553,0.00006504446,0.0000075012053,0.00008133583,0.00013268323,0.000006726865],"category_scores_gemma":[0.0000020749933,0.0001088405,0.000039914998,0.000027983284,0.00022408771,0.0000023935186,0.0002000239,0.00006397036,0.000028889957],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000108913504,0.00009931667,0.00073595345,0.00002903572,0.00003171431,0.000010644764,0.00019123689,0.0004719827,0.9976425,0.00009612722,0.00019458849,0.00038795985],"study_design_scores_gemma":[0.0005616768,0.00024224153,0.0007251834,0.000013344412,0.000011983198,0.00013780208,0.002391778,0.000060406015,0.9913065,0.000005919003,0.004370516,0.00017264488],"about_ca_topic_score_codex":0.000044502176,"about_ca_topic_score_gemma":0.000012992942,"teacher_disagreement_score":0.006336022,"about_ca_system_score_codex":0.0000204905,"about_ca_system_score_gemma":0.000019315507,"threshold_uncertainty_score":0.44383866},"labels":[],"label_agreement":null},{"id":"W3136708589","doi":"10.1128/aem.02704-20","title":"Role of Phylogenetic Structure in the Dynamics of Coastal Viral Assemblages","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"British Columbia Knowledge Development Fund; Ministry of Technology, Innovation and Citizens' Services; Canada Foundation for Innovation; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Phylogenetic tree; Biology; Phylogenetics; Ecology; Evolutionary biology; Geography; Genetics; Gene","score_opus":0.002067070383583068,"score_gpt":0.1727447848883098,"score_spread":0.17067771450472674,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3136708589","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985956,0.00010697237,0.000010654618,0.000050872743,0.000023963614,0.00008706388,0.00024770034,0.0000016711933,0.00087552884],"genre_scores_gemma":[0.9993296,0.0000853217,0.00020100527,0.00011156894,0.000007168192,0.0000032270236,0.00021268941,0.0000058833607,0.00004349342],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99945116,0.00003782874,0.00017254247,0.00017887806,0.000026525893,0.00013306722],"domain_scores_gemma":[0.99975336,0.000029221837,0.00006842015,0.00013293508,6.304014e-7,0.000015429963],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003704579,0.00009424929,0.00014499159,0.000013499424,0.00003194281,0.000004042894,0.00010805724,0.00007541957,0.00062457216],"category_scores_gemma":[0.0000012156067,0.00007375025,0.00003121336,0.000047474547,0.0003273346,0.00002214348,0.0001772833,0.00010103345,0.000007734324],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00000930865,0.000085947206,0.008987573,0.0000034094721,0.000008199058,0.0000015857945,0.00029650936,0.000045520606,0.9864669,0.00015796901,0.000015729898,0.003921384],"study_design_scores_gemma":[0.00032855297,0.000064101114,0.42906934,0.0000044971152,0.00001847236,0.00014001399,0.0025754988,0.00003597703,0.56602746,0.0003611393,0.0012580105,0.000116909774],"about_ca_topic_score_codex":0.00011290328,"about_ca_topic_score_gemma":0.0008514576,"teacher_disagreement_score":0.4204394,"about_ca_system_score_codex":0.000025357442,"about_ca_system_score_gemma":0.0000030060096,"threshold_uncertainty_score":0.68386275},"labels":[],"label_agreement":null},{"id":"W3137545967","doi":"10.1128/aem.03143-20","title":"Effects of Peroxyacetic Acid Spray and Storage Temperature on the Microbiota and Sensory Properties of Vacuum-Packed Subprimal Cuts of Meat","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Meat and Animal Product Quality","field":"Agricultural and Biological Sciences","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Cattlemen's Association; Agriculture and Agri-Food Canada","funders":"Beef Cattle Research Council; Agriculture and Agri-Food Canada; Government of Canada","keywords":"Food science; Vacuum packing; Sensory system; Chemistry; Materials science; Biology","score_opus":0.0095787742450528,"score_gpt":0.16087447193161852,"score_spread":0.15129569768656573,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3137545967","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964237,0.0028837242,3.609071e-8,0.00035338427,0.000020018384,0.00019935021,0.000079934565,0.000003610002,0.000036208232],"genre_scores_gemma":[0.9992195,0.00047712587,0.000018867042,0.0001501737,0.000023771208,0.0000031607985,0.000028525386,0.0000013892567,0.00007753843],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992691,0.000109941495,0.00017523218,0.00027623127,0.000035316152,0.00013414666],"domain_scores_gemma":[0.9997214,0.000099948105,0.00008351895,0.000058444886,0.0000056677773,0.00003101026],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010910158,0.00013857921,0.0002807209,0.000006173534,0.00007759013,0.000006229783,0.00006336075,0.000110071385,0.00003484889],"category_scores_gemma":[0.000009182252,0.00005142354,0.00003364707,0.000037621438,0.00060093735,0.000015803054,0.00012699555,0.00010318401,0.0000011324568],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008467134,0.000099945384,0.0012421078,0.000109978166,0.000024958807,0.000001133453,0.000267058,5.682377e-8,0.9974107,0.00020984562,0.000024299257,0.0005252433],"study_design_scores_gemma":[0.00020567773,0.00020544243,0.0600939,0.000028872748,0.000022322156,0.000024598357,0.0007419472,1.6049272e-7,0.9383494,0.000027617654,0.00021024478,0.000089815345],"about_ca_topic_score_codex":0.000010584423,"about_ca_topic_score_gemma":0.0000072820967,"teacher_disagreement_score":0.0590613,"about_ca_system_score_codex":0.0000047070903,"about_ca_system_score_gemma":0.000002954156,"threshold_uncertainty_score":0.22141787},"labels":[],"label_agreement":null},{"id":"W3139089601","doi":"10.1128/aem.00197-21","title":"Analysis of Different Size Fractions Provides a More Complete Perspective of Viral Diversity in a Freshwater Embayment","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Poxviridae; Fraction (chemistry); Diversity (politics); Virus; Abundance (ecology); Evolutionary biology; Ecology; Virology; Genetics; Chemistry; Gene; Vaccinia","score_opus":0.007830195521095517,"score_gpt":0.20827298831894084,"score_spread":0.20044279279784533,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3139089601","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986844,0.000036333025,0.000042709762,0.00013533092,0.000027424936,0.0001317722,0.0005139027,0.00000393789,0.000424171],"genre_scores_gemma":[0.9992753,0.000064200874,0.00025517223,0.00012970794,0.000004192152,0.000008575151,0.00014041761,0.000005086184,0.0001172988],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992318,0.000036145677,0.00021820354,0.00031236856,0.00003830642,0.00016313794],"domain_scores_gemma":[0.9996608,0.000053622287,0.000099534205,0.00014730875,0.000002104716,0.00003664106],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000032508655,0.00012612416,0.00031983512,0.00005545206,0.00008241939,0.0000042160987,0.00008160362,0.00006756465,0.0027116023],"category_scores_gemma":[0.0000029040712,0.000113449525,0.00010379293,0.00012335819,0.00040177107,0.000045803277,0.0006134618,0.00010431952,0.000009596087],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034375935,0.00036742238,0.06253375,0.00000436432,0.0002087028,0.0000033408787,0.0015236891,0.00010450729,0.934967,0.000058910606,0.000024018544,0.00016990973],"study_design_scores_gemma":[0.00052296865,0.00006303119,0.87594604,0.000005808345,0.00029409607,0.000013431246,0.003664674,0.000069647554,0.11846703,0.00012100799,0.0006789382,0.00015331486],"about_ca_topic_score_codex":0.0011387876,"about_ca_topic_score_gemma":0.002003141,"teacher_disagreement_score":0.81649995,"about_ca_system_score_codex":0.00017685858,"about_ca_system_score_gemma":0.0000027993867,"threshold_uncertainty_score":0.99820006},"labels":[],"label_agreement":null},{"id":"W3144204336","doi":"10.1128/aem.00435-21","title":"Characterization of Lysozyme-Like Effector TseP Reveals the Dependence of Type VI Secretion System (T6SS) Secretion on Effectors in Aeromonas dhakensis Strain SSU","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China; Government of Canada","keywords":"Effector; Secretion; Type VI secretion system; Lysozyme; Biology; Strain (injury); Microbiology; Cell biology; Virulence; Genetics; Biochemistry; Gene","score_opus":0.004983733353485713,"score_gpt":0.2006415575368171,"score_spread":0.19565782418333139,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3144204336","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99902004,0.00018669327,0.000043063766,0.00003034999,0.00008176625,0.00034059034,0.0002445346,0.0000036919846,0.000049275415],"genre_scores_gemma":[0.9973152,0.00043394943,0.000027625354,0.000048623042,0.000034691333,0.000029062456,0.002073219,0.000012354992,0.00002525598],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990236,0.00020240221,0.00023190389,0.00031123587,0.000056192355,0.00017463659],"domain_scores_gemma":[0.99958986,0.00004386894,0.00012309798,0.00020564393,0.0000107842725,0.000026735484],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021570378,0.00014197407,0.00023619541,0.00003281171,0.00004565828,0.0000050469603,0.000082573904,0.00015757224,0.000018478688],"category_scores_gemma":[0.000018319844,0.000113335955,0.000040553194,0.000067992376,0.00020327621,0.0000032440382,0.00014434961,0.000084164596,0.00000549152],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016668481,0.000052495703,0.0046938392,0.00010663619,0.000052495558,0.0000022059892,0.00006858688,0.000009265402,0.9942979,0.00004335031,0.000008555265,0.00049794535],"study_design_scores_gemma":[0.0004844914,0.00034704263,0.096660234,0.000046892936,0.00001714289,0.000021662992,0.0002119052,0.000013485236,0.90182334,0.000004045209,0.00026432742,0.000105405954],"about_ca_topic_score_codex":0.00000899965,"about_ca_topic_score_gemma":0.000013510964,"teacher_disagreement_score":0.09247458,"about_ca_system_score_codex":0.000039270624,"about_ca_system_score_gemma":0.000015045157,"threshold_uncertainty_score":0.4621706},"labels":[],"label_agreement":null},{"id":"W3147788090","doi":"10.1128/aem.00388-21","title":"Campylobacter jejuni Antimicrobial Resistance Profiles and Mechanisms Determined Using a Raman Spectroscopy-Based Metabolomic Approach","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Spectroscopy Techniques in Biomedical and Chemical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Campylobacter jejuni; Ampicillin; Tetracycline; Microbiology; Metabolomics; Raman spectroscopy; Antibiotic resistance; Biology; Antibiotics; Campylobacter; Antimicrobial; Bacteria; Chemistry; Genetics; Bioinformatics","score_opus":0.006056396402406177,"score_gpt":0.22615333922143194,"score_spread":0.22009694281902575,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3147788090","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98607844,0.0005130839,0.012302396,0.000087926965,0.00003406768,0.0002310822,0.00013763839,0.000017801363,0.00059753563],"genre_scores_gemma":[0.93611264,0.0003906139,0.061563164,0.00067464955,0.000069439295,0.000030502653,0.00093038316,0.000026505028,0.00020209746],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986454,0.000051606683,0.00019297661,0.000659442,0.00005478875,0.00039575453],"domain_scores_gemma":[0.99956095,0.000014086103,0.00005546786,0.0002494235,0.000005598184,0.000114500086],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010204771,0.00022873406,0.000253566,0.000033126835,0.00011834293,0.000025097748,0.00013201108,0.00028879126,0.000049123795],"category_scores_gemma":[0.00000890899,0.00020786829,0.000052196094,0.00005302787,0.0006071203,0.0000030074596,0.0003027887,0.00016575288,0.000002257355],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001470328,0.00013305311,0.00014276158,0.000041158317,0.000033737204,0.000006002591,0.0000072909447,4.420295e-7,0.99882734,0.00025644878,0.0002851181,0.00011961659],"study_design_scores_gemma":[0.0006739657,0.000080086844,0.00012258286,0.000009451527,0.000026299926,0.00009368942,0.000042579486,0.000029938008,0.9924034,0.00037035753,0.0059076524,0.00024000405],"about_ca_topic_score_codex":0.0000032202665,"about_ca_topic_score_gemma":0.000002070265,"teacher_disagreement_score":0.04996582,"about_ca_system_score_codex":0.000033379976,"about_ca_system_score_gemma":0.000038519956,"threshold_uncertainty_score":0.84766227},"labels":[],"label_agreement":null},{"id":"W3154135158","doi":"10.1128/aem.00385-21","title":"Transcriptomic and Metabolomic Responses to Carbon and Nitrogen Sources in Methylomicrobium album BG8","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial metabolism and enzyme function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canada First Research Excellence Fund; Alberta Innovates Bio Solutions; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Methanotroph; Biology; Biochemistry; Nitrogen assimilation; Chemistry; Anaerobic oxidation of methane; Enzyme","score_opus":0.003909663727257452,"score_gpt":0.17807098509088634,"score_spread":0.17416132136362888,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3154135158","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98989147,0.009413711,0.00002709571,0.00016907263,0.00009499872,0.00018060148,0.00015699245,0.0000061975566,0.000059848397],"genre_scores_gemma":[0.99572986,0.0023248522,0.00046769288,0.00095510617,0.00006837858,0.000021764463,0.0002206236,0.000022125947,0.00018961006],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99885124,0.0000916599,0.0001961048,0.0005695667,0.000018453724,0.00027297408],"domain_scores_gemma":[0.99969953,0.00001558852,0.000034097076,0.00015934274,0.0000026932516,0.00008875525],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013520614,0.00020826622,0.0002690517,0.00006745373,0.000061715524,0.000014089873,0.000057040765,0.00019760104,0.000016487744],"category_scores_gemma":[0.000007878338,0.00020934916,0.000028932274,0.00004582864,0.00018411527,0.0000034417596,0.0001807302,0.00009887245,0.0000040854084],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026897428,0.000035168407,0.0054428107,0.000011766819,0.00003810597,0.000003102836,0.00018268816,0.0000024709716,0.9927717,0.000027950582,0.0001315974,0.0010836971],"study_design_scores_gemma":[0.001027597,0.00008153119,0.011753168,0.0000045546776,0.000042978183,0.00019464066,0.00045940976,0.0000013168687,0.9430865,0.000060022074,0.04303594,0.00025235774],"about_ca_topic_score_codex":0.000047926103,"about_ca_topic_score_gemma":0.00008043539,"teacher_disagreement_score":0.04968518,"about_ca_system_score_codex":0.000011256978,"about_ca_system_score_gemma":0.000015082276,"threshold_uncertainty_score":0.8537011},"labels":[],"label_agreement":null},{"id":"W3157376728","doi":"10.1128/aem.00422-21","title":"Population Analysis of Vibrio cholerae in Aquatic Reservoirs Reveals a Novel Sister Species ( <i>Vibrio paracholerae</i> sp. nov.) with a History of Association with Humans","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Vibrio cholerae; Biology; Cholera; Vibrio; Adaptation (eye); Ecology; Population; Zoology; Microbiology; Genetics; Bacteria; Environmental health","score_opus":0.008616351876086923,"score_gpt":0.19649506428341604,"score_spread":0.18787871240732912,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3157376728","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99845624,0.0004818586,0.000057329402,0.00005622531,0.000013665957,0.00016538246,0.00012330676,0.0000022511974,0.00064372603],"genre_scores_gemma":[0.99679554,0.00023072136,0.0004363523,0.00010689683,0.00001804039,0.000022840308,0.0014055531,0.000012145104,0.0009719076],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989581,0.00005994203,0.00030210693,0.00037747176,0.000087057015,0.00021528252],"domain_scores_gemma":[0.999455,0.000030083622,0.00023785002,0.00023447022,0.000011653457,0.00003096376],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015601092,0.00015625475,0.0004359539,0.000099799014,0.000027402515,0.0000054098973,0.00007465745,0.00012750358,0.00002923068],"category_scores_gemma":[0.000012854797,0.00013490766,0.00005777897,0.00013513974,0.00021213252,0.0000059806903,0.0001226341,0.00008758472,8.1916363e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015787226,0.00011886713,0.27444848,0.00002347944,0.00045357936,0.0000011711298,0.0001791794,0.00009782803,0.72443235,0.000015494405,0.000046493624,0.000025238396],"study_design_scores_gemma":[0.0016850497,0.00025622945,0.88542444,0.000023784323,0.00028060918,0.0000076251254,0.00035525218,0.00001273059,0.108960524,0.0000053670105,0.0027663603,0.00022200722],"about_ca_topic_score_codex":0.00009362692,"about_ca_topic_score_gemma":0.0008838282,"teacher_disagreement_score":0.6154718,"about_ca_system_score_codex":0.00020419616,"about_ca_system_score_gemma":0.000030954307,"threshold_uncertainty_score":0.5501375},"labels":[],"label_agreement":null},{"id":"W3158569162","doi":"10.1128/aem.02980-20","title":"On-Farm Anaerobic Digestion of Dairy Manure Reduces the Abundance of Antibiotic Resistance-Associated Gene Targets and the Potential for Plasmid Transfer","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Agriculture and Agri-Food Canada; Public Health Agency of Canada; Western University","funders":"Canadian Institutes of Health Research; Agriculture and Agri-Food Canada; Government of Canada","keywords":"Plasmid; Manure; Biology; Bacteria; Anaerobic digestion; Microbiology; Escherichia coli; Horizontal gene transfer; Antibiotic resistance; Raw milk; Gene; Food science; Antibiotics; Genetics; Agronomy; Ecology; Genome","score_opus":0.002899225285723567,"score_gpt":0.1774150110069164,"score_spread":0.17451578572119283,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3158569162","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968352,0.0019367676,0.00026650514,0.00019106836,0.0000728978,0.0002767404,0.00036708114,0.000002150773,0.00005160937],"genre_scores_gemma":[0.99726987,0.0015941701,0.00022448249,0.00011987057,0.00002772913,0.000005629596,0.00058874924,0.000013267186,0.00015624247],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992421,0.000053449254,0.00021949377,0.00029384997,0.00003303294,0.0001580703],"domain_scores_gemma":[0.99964714,0.000053461474,0.00009249711,0.00018049004,0.000007893176,0.00001849928],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012044499,0.00013534838,0.0002212831,0.000010615591,0.00010775755,0.000008395675,0.00010306371,0.00014856002,0.000005466488],"category_scores_gemma":[0.000013054057,0.00008987389,0.00006215892,0.000025680996,0.00092303794,0.0000016905317,0.000055896755,0.000064173626,3.64317e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00071448914,0.00007343575,0.00028750976,0.000024724592,0.0001089828,6.782016e-7,0.00006616373,0.000022642742,0.9976325,0.00064427074,0.00007893387,0.00034566817],"study_design_scores_gemma":[0.0018095383,0.000116537994,0.011188542,0.000019932662,0.000058426762,0.000014765319,0.0002864674,0.0000039840984,0.98546344,0.00029766027,0.00062860065,0.00011209504],"about_ca_topic_score_codex":0.0000019402762,"about_ca_topic_score_gemma":0.000014350461,"teacher_disagreement_score":0.01216905,"about_ca_system_score_codex":0.000009209473,"about_ca_system_score_gemma":0.000013524277,"threshold_uncertainty_score":0.36649507},"labels":[],"label_agreement":null},{"id":"W3161231854","doi":"10.1128/aem.00659-21","title":"Antimicrobial Resistance Gene Transfer from Campylobacter jejuni in Mono- and Dual-Species Biofilms","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Campylobacter jejuni; Microbiology; Biofilm; Horizontal gene transfer; Biology; Salmonella enterica; Antibiotic resistance; Strain (injury); Campylobacter; Gene; Escherichia coli; Bacteria; Genetics; Antibiotics; Phylogenetics","score_opus":0.00836118229011233,"score_gpt":0.15775859788448554,"score_spread":0.14939741559437322,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3161231854","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966056,0.0014706785,0.0000025370537,0.0007535661,0.000082857034,0.00011897628,0.0005907675,0.000017408167,0.00035766375],"genre_scores_gemma":[0.9946406,0.0022342517,0.00016137118,0.0013068661,0.00010921246,0.000010748157,0.0012690024,0.0000023760226,0.00026555505],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99864906,0.000100003184,0.0002687572,0.0006015937,0.000025629257,0.0003549582],"domain_scores_gemma":[0.9996518,0.00016112663,0.00003345505,0.00007481217,0.0000024845622,0.00007634547],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008568241,0.00021509438,0.0003508679,0.0000117616755,0.00010544824,0.00002136549,0.00008260181,0.0002442504,0.0004944312],"category_scores_gemma":[0.0000033234248,0.00011149233,0.000045174693,0.00007277139,0.00033241496,0.000037348906,0.00012273893,0.00015043757,0.000023401575],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000053457345,0.00008211415,0.037838977,0.000002933439,0.000016960992,0.000025207491,0.0001130585,3.9657363e-7,0.95956206,0.00010448452,0.00019956728,0.002000777],"study_design_scores_gemma":[0.0006747782,0.000051368745,0.6801853,0.000011650803,0.000020012976,0.00010149253,0.00062530534,0.0000010728058,0.28563434,0.0004713096,0.03183605,0.00038728025],"about_ca_topic_score_codex":0.000097173426,"about_ca_topic_score_gemma":0.00068296643,"teacher_disagreement_score":0.6739277,"about_ca_system_score_codex":0.00002510005,"about_ca_system_score_gemma":0.0000033211327,"threshold_uncertainty_score":0.5413675},"labels":[],"label_agreement":null},{"id":"W3168734789","doi":"10.1128/aem.00467-21","title":"Legionella pneumophila CRISPR-Cas Suggests Recurrent Encounters with One or More Phages in the Family <i>Microviridae</i>","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Legionella pneumophila; Legionnaires' disease; Microbiology; Legionella; Isolation (microbiology); Biology; Pneumonia; Bacteria; Medicine; Genetics","score_opus":0.010030399020801236,"score_gpt":0.2276430580917287,"score_spread":0.21761265907092744,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3168734789","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956481,0.0026092534,0.000040246137,0.0007829655,0.00004554537,0.00024605927,0.00006970295,0.0000048906104,0.000553236],"genre_scores_gemma":[0.99226105,0.0043211975,0.00009799644,0.0022618808,0.00009789633,0.000047026548,0.0006573221,0.000021373613,0.00023428434],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987702,0.00007326594,0.00017788557,0.0005353517,0.00007292473,0.00037041717],"domain_scores_gemma":[0.9995606,0.000029419667,0.00004746586,0.00029936276,0.000005530362,0.000057632056],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012395976,0.00021431793,0.00019503247,0.000030894375,0.0001118463,0.000027818845,0.00020324883,0.00015636726,0.000014065542],"category_scores_gemma":[0.0000033661715,0.00014169262,0.000039688028,0.00007917017,0.00046468302,0.0000039811516,0.00019653884,0.00021204517,0.00001669868],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002650855,0.0002203402,0.0021887105,0.000016907774,0.000039809325,0.00007550769,0.00023847849,0.0000070413325,0.9936838,0.000019873563,0.0016073709,0.0016370523],"study_design_scores_gemma":[0.0028573703,0.00077171036,0.02134508,0.000035236237,0.000047828657,0.0013461685,0.0065047485,0.0000050286967,0.8598477,0.000030158055,0.106608815,0.0006001549],"about_ca_topic_score_codex":0.000023856071,"about_ca_topic_score_gemma":0.000072262286,"teacher_disagreement_score":0.13383612,"about_ca_system_score_codex":0.00002611714,"about_ca_system_score_gemma":0.00004587269,"threshold_uncertainty_score":0.57780576},"labels":[],"label_agreement":null},{"id":"W3174870876","doi":"10.1128/aem.00647-21","title":"Improved Dynamic Range of a Rhamnose-Inducible Promoter for Gene Expression in <i>Burkholderia</i> spp.","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Mitacs; Government of Canada","keywords":"Biology; Burkholderia cenocepacia; Promoter; Gene; Genetics; Plasmid; Burkholderia; lac operon; Gene cluster; Mutant; Regulation of gene expression; Reporter gene; Gene expression; Molecular biology; Bacteria; Virulence","score_opus":0.0034975291505154613,"score_gpt":0.21551290471857057,"score_spread":0.2120153755680551,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3174870876","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99425846,0.0016223552,0.0036364014,0.000020705485,0.00005648681,0.00024839333,0.00009780674,0.000003052992,0.000056337238],"genre_scores_gemma":[0.9950262,0.00037840242,0.003787125,0.00006842726,0.00002752625,0.0000537048,0.0005140444,0.00001686414,0.00012770484],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993126,0.000011049598,0.00016018297,0.00032363943,0.000013224416,0.00017932359],"domain_scores_gemma":[0.99975914,0.000006919687,0.00003436187,0.00016795285,0.0000025752133,0.000029073597],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000054632543,0.00011757917,0.00015648664,0.000019713962,0.000021097921,0.000003081428,0.000054001634,0.00014695052,0.000016258618],"category_scores_gemma":[0.0000030215817,0.000116006646,0.00003982892,0.000020626136,0.00005932183,0.0000012896194,0.00010853358,0.000045705303,9.083697e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049907318,0.0000695803,0.000484303,0.000029695231,0.0000135124355,0.0000010565502,0.000044213983,0.00003012507,0.99837,0.0000020578193,0.00003328028,0.0008723037],"study_design_scores_gemma":[0.0011711351,0.000099422716,0.0012291733,0.000006864435,0.00000848086,0.00003330241,0.000108160944,0.00004463122,0.9947548,0.000023137747,0.0023914706,0.00012942842],"about_ca_topic_score_codex":0.0000023644589,"about_ca_topic_score_gemma":0.000009846057,"teacher_disagreement_score":0.003615172,"about_ca_system_score_codex":0.000009048568,"about_ca_system_score_gemma":0.000009993571,"threshold_uncertainty_score":0.47306138},"labels":[],"label_agreement":null},{"id":"W3176055576","doi":"10.1128/aem.00641-21","title":"Borrelia afzelii Infection in the Rodent Host Has Dramatic Effects on the Bacterial Microbiome of Ixodes ricinus Ticks","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Canadian Institutes of Health Research; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Borrelia afzelii; Ixodes ricinus; Biology; Microbiome; Ricinus; Nymph; Tick; Microbiology; Borrelia; Ixodes; Larva; Zoology; Borrelia burgdorferi; Virology; Ecology; Immunology; Genetics; Botany; Antibody","score_opus":0.007857140381861973,"score_gpt":0.16644328676277803,"score_spread":0.15858614638091606,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3176055576","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984422,0.000090526504,2.0965815e-7,0.00083543285,0.00018196447,0.00025115605,0.00005575095,0.0000058657815,0.00013690285],"genre_scores_gemma":[0.9986147,0.00013183635,0.000006467782,0.00092665444,0.00011355676,0.000026938666,0.00016682311,0.0000011164165,0.000011875293],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991612,0.0001621757,0.00021045595,0.00023103203,0.000039840947,0.00019528506],"domain_scores_gemma":[0.99951726,0.00030358127,0.000086580854,0.000072008275,0.000002957485,0.00001759483],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001849588,0.00014394635,0.0001918729,0.0000094868365,0.00018670081,0.000050139697,0.00013105068,0.00011010862,0.00021949859],"category_scores_gemma":[0.000008362298,0.00004625666,0.000052859632,0.0000970229,0.00024994704,0.000023460212,0.00008014361,0.00011105165,0.000027557235],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029837704,0.00012860334,0.0035056088,0.000008803963,0.000011290738,0.000002170249,0.00023736221,4.743747e-7,0.9941218,0.00012812788,0.000093526294,0.0017323962],"study_design_scores_gemma":[0.0002187553,0.0002561115,0.40011555,0.00002449953,0.000015997308,0.000035794325,0.00031591722,6.8304706e-7,0.5952988,0.00010919238,0.0034891444,0.000119559474],"about_ca_topic_score_codex":0.00025436957,"about_ca_topic_score_gemma":0.00021587894,"teacher_disagreement_score":0.398823,"about_ca_system_score_codex":0.000020080326,"about_ca_system_score_gemma":0.0000034726595,"threshold_uncertainty_score":0.24033555},"labels":[],"label_agreement":null},{"id":"W3177481403","doi":"10.1128/aem.00929-21","title":"Sea-Ice Bacteria <i>Halomonas</i> sp. Strain 363 and <i>Paracoccus</i> sp. Strain 392 Produce Multiple Types of Poly-3-Hydroxyalkaonoic Acid (PHA) Storage Polymers at Low Temperature","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"biodegradable polymer synthesis and properties","field":"Materials Science","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"European Regional Development Fund; Medical Research Council; China Scholarship Council; European Commission; Suomen Ympäristökeskus; Academy of Finland; Llywodraeth Cymru; Helsingin Yliopisto","keywords":"Bioplastic; Halomonas; Strain (injury); Bacteria; Polymer; Chemistry; Microbiology; Polyhydroxyalkanoates; Pollution; Food science; Biology; Environmental chemistry; Organic chemistry; Ecology; Halophile; Genetics","score_opus":0.005719823468083355,"score_gpt":0.1702625399807614,"score_spread":0.16454271651267804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3177481403","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9680328,0.02737619,0.000003991673,0.0002434505,0.00020803978,0.00021542993,0.0037028312,0.000029507111,0.00018776151],"genre_scores_gemma":[0.997199,0.0005837227,0.0004953455,0.0005054447,0.00008182305,0.000023805309,0.0005927092,0.000036750927,0.00048137517],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99811035,0.00013564138,0.0003713881,0.0008116201,0.00007781747,0.0004931701],"domain_scores_gemma":[0.9992619,0.00007198703,0.00016255981,0.0003622987,0.0000057492703,0.00013546184],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00019570607,0.00038079004,0.0005175164,0.000039660594,0.0002524156,0.000053860684,0.00019205366,0.00027476813,0.00092499354],"category_scores_gemma":[0.000007633709,0.00032297563,0.0000631525,0.00006657138,0.00071670307,0.00010346934,0.00033710213,0.00017311625,0.000048317106],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016280483,0.00013685969,0.0007895655,0.00008724494,0.000044059536,0.000009674453,0.00042587257,0.0000013462881,0.992446,0.00002236776,0.00014935592,0.005724832],"study_design_scores_gemma":[0.00065388886,0.000088049805,0.0029688913,0.000027598986,0.00004531314,0.00014227412,0.00058078585,0.000005753103,0.990835,0.000013713068,0.00426288,0.0003758369],"about_ca_topic_score_codex":0.0000728864,"about_ca_topic_score_gemma":0.00006108328,"teacher_disagreement_score":0.029166225,"about_ca_system_score_codex":0.000047240974,"about_ca_system_score_gemma":0.00003929198,"threshold_uncertainty_score":0.9999883},"labels":[],"label_agreement":null},{"id":"W3179338758","doi":"10.1128/aem.00987-21","title":"Proteome, Bioinformatic, and Functional Analyses Reveal a Distinct and Conserved Metabolic Pathway for Bile Salt Degradation in the <i>Sphingomonadaceae</i>","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Steroid Chemistry and Biochemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Deutsche Forschungsgemeinschaft; Deutscher Akademischer Austauschdienst","keywords":"Steroid; Biochemistry; Biology; Gene; Bile acid; Metabolic pathway; Amidase; Enzyme; Chemistry; Hormone","score_opus":0.013051863223925167,"score_gpt":0.21318377109740286,"score_spread":0.20013190787347768,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3179338758","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971362,0.0020681038,0.0001441998,0.00014610747,0.000014207855,0.00020518052,0.00019697222,0.0000029415703,0.00008609591],"genre_scores_gemma":[0.9964204,0.00030728907,0.0003625365,0.0004826741,0.00005204291,0.00009225322,0.002162022,0.0000066506027,0.000114152805],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993474,0.000022254131,0.00016926714,0.0002831533,0.00002587752,0.00015206159],"domain_scores_gemma":[0.9997434,0.00003400903,0.0000596501,0.00012437081,0.0000040355676,0.000034535315],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010467081,0.00013861357,0.00014022172,0.0000109277935,0.000100371086,0.000020784726,0.00004574005,0.0001262627,0.0000073450265],"category_scores_gemma":[0.0000125523475,0.00010512467,0.000028674258,0.00003158097,0.00018401304,0.0000038505696,0.00009522159,0.00006715239,4.6571103e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006145546,0.000039022176,0.0026260216,0.00004296692,0.000029941491,0.0000010271622,0.0000339006,7.727417e-7,0.9962329,0.000014285139,0.00016564221,0.0007520318],"study_design_scores_gemma":[0.0008511704,0.00003954472,0.007254593,0.0000048209763,0.000025951455,0.0002573058,0.0005070212,0.000010504635,0.9819796,0.000055047407,0.008872589,0.00014185216],"about_ca_topic_score_codex":0.000004480449,"about_ca_topic_score_gemma":0.0000103209495,"teacher_disagreement_score":0.014253334,"about_ca_system_score_codex":0.0000050837475,"about_ca_system_score_gemma":0.000016524973,"threshold_uncertainty_score":0.42868596},"labels":[],"label_agreement":null},{"id":"W3181713593","doi":"10.1128/aem.00678-21","title":"Stable Isotope Fractionation Reveals Similar Atomic-Level Controls during Aerobic and Anaerobic Microbial Hg Transformation Pathways","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mercury impact and mitigation studies","field":"Environmental Science","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"U.S. Geological Survey; Canada Foundation for Innovation; Natural Sciences and Engineering Research Council of Canada; Government of Canada; U.S. Department of the Interior","keywords":"Anoxygenic photosynthesis; Anoxic waters; Isotope fractionation; Environmental chemistry; Fractionation; Chemistry; Photosynthesis; Biochemistry; Phototroph; Chromatography","score_opus":0.011783458395254116,"score_gpt":0.19565991737981409,"score_spread":0.18387645898455998,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3181713593","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997486,0.00033028072,0.0002217965,0.00024876217,0.00007392478,0.0003271708,0.00019589919,0.000025821933,0.0010903757],"genre_scores_gemma":[0.9971549,0.0007751334,0.0006344781,0.0006709215,0.00003094243,0.000029385394,0.00039820827,0.000016087026,0.00028997855],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988647,0.00005636132,0.00030576676,0.00040169008,0.000063584346,0.00030788992],"domain_scores_gemma":[0.9996236,0.00004761588,0.00010307166,0.00013050884,0.0000027388107,0.00009248099],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011557672,0.00022001626,0.0002687604,0.000033243137,0.0003683772,0.000031517775,0.000059061327,0.00013884054,0.0008567263],"category_scores_gemma":[0.0000056071362,0.00021776126,0.000048085323,0.00006926369,0.00028706415,0.00021901792,0.00013276511,0.00013767414,0.00013142246],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031803593,0.000050643415,0.003798323,0.000013898531,0.00003640455,0.0000027859314,0.0006267714,0.000054107706,0.9938009,0.00018108371,0.0002565791,0.0011467179],"study_design_scores_gemma":[0.0041982047,0.00009479047,0.2714404,0.000023784352,0.00011294023,0.000431426,0.0028657676,0.00005864352,0.70110303,0.001008724,0.017882776,0.0007795499],"about_ca_topic_score_codex":0.000022837787,"about_ca_topic_score_gemma":0.000027770593,"teacher_disagreement_score":0.29269785,"about_ca_system_score_codex":0.00013874898,"about_ca_system_score_gemma":0.000006783737,"threshold_uncertainty_score":0.9380553},"labels":[],"label_agreement":null},{"id":"W3184385868","doi":"10.1128/aem.00881-21","title":"Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (RubisCO) Is Essential for Growth of the Methanotroph Methylococcus capsulatus Strain Bath","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial metabolism and enzyme function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Renewable Energy Laboratory; University of Washington; University of Alberta; University of North Texas; San Diego State University; U.S. Department of Energy","keywords":"Ribulose 1,5-bisphosphate; Oxygenase; RuBisCO; Pyruvate carboxylase; Biochemistry; Biology; Methanotroph; Chemistry; Strain (injury); Enzyme; Anatomy","score_opus":0.0032359432670055737,"score_gpt":0.17852222454849023,"score_spread":0.17528628128148466,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3184385868","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99295783,0.0026313353,0.00077702734,0.00013766086,0.00037771568,0.00033853945,0.0026895986,0.0000052501414,0.00008506776],"genre_scores_gemma":[0.99611914,0.00064756337,0.00075202103,0.0007882831,0.00015705996,0.00003946782,0.0010838886,0.000027853665,0.00038469574],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99883175,0.00006361614,0.00026045382,0.0004997169,0.000040946285,0.00030353485],"domain_scores_gemma":[0.9994687,0.000015910457,0.00012295572,0.00031669324,0.000013966273,0.00006177643],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000111573296,0.00022271548,0.00026722677,0.000018743258,0.000116176314,0.0000075493977,0.00014492715,0.00023943438,0.00008632855],"category_scores_gemma":[0.00001471518,0.0001801542,0.00015013208,0.000057862326,0.00027796061,0.000003259757,0.0002285739,0.000095453936,0.000004343961],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010359245,0.00007926161,0.00013107661,0.000031810345,0.00011431588,9.2119296e-7,0.000069873364,0.000009660438,0.996952,0.00025762455,0.0015328431,0.0007170406],"study_design_scores_gemma":[0.0011034338,0.00007897657,0.0011198578,0.0000043775767,0.000101850506,0.000032640262,0.00012608863,0.0000034326363,0.96953315,0.00017932818,0.02752046,0.00019641522],"about_ca_topic_score_codex":0.000028231429,"about_ca_topic_score_gemma":0.000012353724,"teacher_disagreement_score":0.027418839,"about_ca_system_score_codex":0.000013872842,"about_ca_system_score_gemma":0.000038963273,"threshold_uncertainty_score":0.7346475},"labels":[],"label_agreement":null},{"id":"W3185787644","doi":"10.1128/aem.00329-21","title":"Retracted and Republished from: “Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus <i>Fomitopsis pinicola</i> ”","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme-mediated dye degradation","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Science Foundation","keywords":"Botany; Fungus; Biology; Substrate (aquarium); Ecology","score_opus":0.008465720574672521,"score_gpt":0.16031419700320212,"score_spread":0.1518484764285296,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3185787644","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99805105,0.0010361566,0.0000020129849,0.00034032212,0.00010518878,0.00015771139,0.00016776215,0.000014257863,0.00012554407],"genre_scores_gemma":[0.99588835,0.0011082457,0.00012666019,0.00026535342,0.00025717187,0.000018847628,0.0023185732,0.0000017458435,0.000015036406],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99895704,0.00010455006,0.00021725241,0.00045630964,0.000054263965,0.00021055872],"domain_scores_gemma":[0.99959934,0.00019594538,0.00008271818,0.00006777019,0.0000028678178,0.000051338764],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010693501,0.00015047006,0.00017574578,0.000009742511,0.00016343688,0.00008446349,0.00009094766,0.00022374386,0.00019168742],"category_scores_gemma":[0.000007803661,0.0000660003,0.000020484662,0.00007584575,0.00015353366,0.00008125593,0.00013319234,0.00024333487,0.0000038147414],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024948364,0.00005941217,0.008540269,0.0000015550785,0.00000631907,0.0000069355774,0.00013676473,1.9213557e-7,0.9822393,0.00001672784,0.00031565482,0.008651913],"study_design_scores_gemma":[0.00069307076,0.00006588228,0.605705,0.000012683924,0.000016959533,0.000050916704,0.0016636167,0.000006362542,0.38781768,0.00015290672,0.0036002547,0.00021467435],"about_ca_topic_score_codex":0.00004490183,"about_ca_topic_score_gemma":0.00009167875,"teacher_disagreement_score":0.59716475,"about_ca_system_score_codex":0.000014531315,"about_ca_system_score_gemma":0.0000017879952,"threshold_uncertainty_score":0.2691414},"labels":[],"label_agreement":null},{"id":"W3187513297","doi":"10.1128/aem.00800-21","title":"Diesel and Crude Oil Biodegradation by Cold-Adapted Microbial Communities in the Labrador Sea","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Alberta; ArcticNet; Government of Canada; W. Garfield Weston Foundation; Alberta Innovates - Technology Futures; Marine Environmental Observation Prediction and Response Network; Association of Canadian Universities for Northern Studies; Genome Canada","keywords":"Biodegradation; Crude oil; Diesel fuel; Environmental science; Microbial population biology; Environmental chemistry; Biology; Ecology; Chemistry; Bacteria; Petroleum engineering; Geology","score_opus":0.006368654286143261,"score_gpt":0.17360501661569383,"score_spread":0.16723636232955058,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3187513297","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99757063,0.00037446647,0.000006847356,0.0007262022,0.000044384695,0.00010597797,0.00036837006,0.000011193101,0.0007919031],"genre_scores_gemma":[0.9945065,0.0013945732,0.00021821511,0.0025360736,0.000012709507,0.000009244955,0.0010344286,0.0000092098035,0.00027906772],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99910027,0.00012677458,0.00020105121,0.0002674156,0.00005159846,0.00025291147],"domain_scores_gemma":[0.99965614,0.00007170164,0.0000582853,0.00016778185,9.281678e-7,0.00004515981],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001682241,0.00017000463,0.00016369243,0.000018592094,0.00017411934,0.000033866098,0.0001419721,0.0001284056,0.0007550897],"category_scores_gemma":[0.0000028798365,0.00013302654,0.000020299882,0.00008457759,0.0006020958,0.00005553331,0.0002425917,0.00016420141,0.00008877653],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015764484,0.00010706462,0.010698543,0.0000051126494,0.000007310362,0.0000028557838,0.0008195098,0.0000010524859,0.9801712,0.000038134494,0.0039901375,0.004143317],"study_design_scores_gemma":[0.0028498983,0.00011254024,0.05624961,0.000017135291,0.00004089282,0.00022500637,0.009879698,0.000032380234,0.52007216,0.000063845706,0.40971628,0.000740529],"about_ca_topic_score_codex":0.000336849,"about_ca_topic_score_gemma":0.00091297156,"teacher_disagreement_score":0.460099,"about_ca_system_score_codex":0.000060345454,"about_ca_system_score_gemma":0.0000044536173,"threshold_uncertainty_score":0.82677025},"labels":[],"label_agreement":null},{"id":"W3197612322","doi":"10.1128/aem.01160-21","title":"Viral Characteristics of the Warm Atlantic and Cold Arctic Water Masses in the Nordic Seas","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Fisheries and Oceans Canada","funders":"","keywords":"Arctic; Subarctic climate; Oceanography; Metagenomics; Water mass; Human virome; Ecology; Biology; Geology","score_opus":0.00311055070968157,"score_gpt":0.16457908633121485,"score_spread":0.16146853562153327,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3197612322","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989853,0.00004335416,0.000003580456,0.00040881094,0.00007087254,0.00014112509,0.000035624063,0.0000025327452,0.0003087895],"genre_scores_gemma":[0.9987756,0.00013590825,0.000045814482,0.0007988769,0.00001551352,0.000010861532,0.00005770237,0.0000069256416,0.00015278923],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99935913,0.00005396016,0.00015999163,0.00021090473,0.00002795596,0.00018807585],"domain_scores_gemma":[0.9997418,0.000035614772,0.00004152003,0.00015896157,6.081307e-7,0.000021519758],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006939389,0.00010927232,0.00013698173,0.000008828248,0.00010172412,0.00001533758,0.000110866655,0.00006127816,0.00060585205],"category_scores_gemma":[0.000001885757,0.000060963688,0.000030908057,0.00003233497,0.00043853733,0.00003291937,0.00031309944,0.00014035885,0.000041934476],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000074748173,0.00007084489,0.06179175,0.00000859198,0.000007826326,0.0000042502556,0.00035092374,0.000001174262,0.9372068,0.00003556844,0.00004840461,0.0004663756],"study_design_scores_gemma":[0.000368543,0.000034635537,0.79416585,0.000011335018,0.00003675842,0.0002959204,0.00049936207,0.0000033104052,0.18120992,0.0000666011,0.02316591,0.00014181688],"about_ca_topic_score_codex":0.00013835011,"about_ca_topic_score_gemma":0.00009281101,"teacher_disagreement_score":0.7559969,"about_ca_system_score_codex":0.000035795623,"about_ca_system_score_gemma":0.0000023695331,"threshold_uncertainty_score":0.66336554},"labels":[],"label_agreement":null},{"id":"W3200903400","doi":"10.1128/aem.01126-21","title":"Biofilm-Forming Capacity of Escherichia coli Isolated from Cattle and Beef Packing Plants: Relation to Virulence Attributes, Stage of Processing, Antimicrobial Interventions, and Heat Tolerance","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; University of Lethbridge","funders":"Beef Cattle Research Council","keywords":"Biofilm; Escherichia coli; Virulence; Antimicrobial; Bacteria; Contamination; Strain (injury)","score_opus":0.009665292401819242,"score_gpt":0.20323228924687908,"score_spread":0.19356699684505985,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3200903400","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99737674,0.001237671,0.00037653735,0.000032939362,0.00004445695,0.00011913314,0.0008000077,0.0000033359468,0.0000091545],"genre_scores_gemma":[0.9965777,0.000499534,0.0020377527,0.00010965845,0.000022517781,0.0000021202814,0.00072206784,0.000009444749,0.000019202364],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99925715,0.000027402524,0.00024667478,0.00031010836,0.00001817547,0.00014047862],"domain_scores_gemma":[0.9997263,0.000009546505,0.0001172066,0.00009809119,0.0000067990422,0.000042053052],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005962014,0.00012400442,0.00021194055,0.000019705547,0.00008257815,0.000012902285,0.000035309055,0.00015401155,0.000010829739],"category_scores_gemma":[0.00000541627,0.00012714168,0.000026591651,0.00002963984,0.00022998491,0.0000073372107,0.00015293362,0.0000635506,5.260951e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008682774,0.000043989126,0.005423747,0.00006532251,0.000027086995,6.0560006e-7,0.00013948801,0.0000061979804,0.9926374,0.000007014799,0.000013651207,0.0015486791],"study_design_scores_gemma":[0.00045479496,0.00010881841,0.023178658,0.0000862895,0.000018241373,0.000020473355,0.00018104447,0.000016608254,0.9747825,0.0000030982774,0.0010134389,0.00013602247],"about_ca_topic_score_codex":0.00009131241,"about_ca_topic_score_gemma":0.00003370943,"teacher_disagreement_score":0.017854877,"about_ca_system_score_codex":0.000008475429,"about_ca_system_score_gemma":0.000011538721,"threshold_uncertainty_score":0.51846874},"labels":[],"label_agreement":null},{"id":"W3200942549","doi":"10.1128/aem.01574-21","title":"Genomic and Phenotypic Analysis of Heat and Sanitizer Resistance in Escherichia coli from Beef in Relation to the Locus of Heat Resistance","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Beef Cattle Research Council","keywords":"Escherichia coli; Locus (genetics); Genome; Prophage; Gene; Typing; Multilocus sequence typing; Phylogenetic tree; Plasmid","score_opus":0.009722666182841684,"score_gpt":0.21107447124357756,"score_spread":0.20135180506073588,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3200942549","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99287826,0.0064429874,0.000070371316,0.00011711945,0.000017972827,0.00013750249,0.00021541014,8.8265136e-7,0.00011949519],"genre_scores_gemma":[0.9976709,0.00097253354,0.0007663541,0.00019888514,0.000011599563,0.000011894841,0.00031790344,0.000007992284,0.000041936553],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99922514,0.000064033615,0.00024149382,0.00033422242,0.000020171548,0.00011494966],"domain_scores_gemma":[0.99969983,0.000028099395,0.000040217317,0.00020549365,0.000002745585,0.000023642251],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008843935,0.00010395947,0.00024146089,0.000037215726,0.000026339421,0.000003648982,0.000060907332,0.00011501314,0.000010819984],"category_scores_gemma":[0.000004722028,0.00009562359,0.00002241818,0.00009800089,0.00019801261,0.000002044793,0.00020138666,0.000051718496,3.874004e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027321768,0.000026460526,0.033527635,0.0000097691745,0.00008955926,9.918857e-7,0.00025815406,0.00014397403,0.96552736,0.00006155187,0.000011430209,0.00006987733],"study_design_scores_gemma":[0.00076878344,0.000037095364,0.6573811,0.000011768672,0.00009400775,0.0000015326724,0.00039326135,0.000009301974,0.3382972,0.00012469965,0.0027397678,0.00014147542],"about_ca_topic_score_codex":0.00005390969,"about_ca_topic_score_gemma":0.0023972043,"teacher_disagreement_score":0.6272302,"about_ca_system_score_codex":0.000024680905,"about_ca_system_score_gemma":0.000009336588,"threshold_uncertainty_score":0.3899417},"labels":[],"label_agreement":null},{"id":"W3201198686","doi":"10.1128/aem.01396-21","title":"Physicochemical Parameters Affecting Norovirus Adhesion to Ready-To-Eat Foods","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Université Laval","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Norovirus; Food science; Chemistry; Food contaminant; Adhesion; Microbiology; Biology; Virology; Virus; Organic chemistry","score_opus":0.016222477911753765,"score_gpt":0.26138065491247636,"score_spread":0.2451581770007226,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3201198686","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99782246,0.00011623805,0.00015972454,0.0010756347,0.00005651152,0.0002893872,0.000053205396,0.000022168846,0.00040466728],"genre_scores_gemma":[0.98883307,0.0001135174,0.004356192,0.006007484,0.0000816576,0.000039412247,0.00041827702,0.000019412584,0.00013099833],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986983,0.000060195835,0.0001920275,0.00050439837,0.00004207668,0.00050302607],"domain_scores_gemma":[0.9993964,0.000044788452,0.000024712403,0.00019912663,0.0000034468005,0.00033156612],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009864933,0.00016891852,0.00038095278,0.000046636,0.000069700334,0.0000076438855,0.000058387293,0.00011881117,0.00008717738],"category_scores_gemma":[0.00004079747,0.00015392424,0.000058060083,0.00005988238,0.00013647192,0.000014725331,0.00027249186,0.00020460776,0.0002786465],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027265135,0.00010683861,0.0067113056,0.000019735126,0.000037200494,0.000044091976,0.000071243136,0.0000044304993,0.979825,0.000015191116,0.00167372,0.011218576],"study_design_scores_gemma":[0.0019601649,0.0017127976,0.030978046,0.00005893823,0.000048543763,0.0011010435,0.0007004912,0.000009052473,0.9445755,0.000068402216,0.018480716,0.0003063051],"about_ca_topic_score_codex":0.0000195024,"about_ca_topic_score_gemma":0.000006264474,"teacher_disagreement_score":0.035249516,"about_ca_system_score_codex":0.000082844796,"about_ca_system_score_gemma":0.000010054168,"threshold_uncertainty_score":0.62768483},"labels":[],"label_agreement":null},{"id":"W3202524745","doi":"10.1128/aem.01526-21","title":"Identification of Copper-Containing Oxidoreductases in the Secretomes of Three <i>Colletotrichum</i> Species with a Focus on Copper Radical Oxidases for the Biocatalytic Production of Fatty Aldehydes","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biochemical and biochemical processes","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Association Nationale de la Recherche et de la Technologie; CHIST-ERA; Agence Nationale de la Recherche","keywords":"Copper; Context (archaeology); Chemistry; Enzyme; Flavor; Organic chemistry; Biochemistry; Biology","score_opus":0.007608874677556942,"score_gpt":0.19292563296756565,"score_spread":0.1853167582900087,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3202524745","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968205,0.0021571298,0.00007960344,0.00042100038,0.00001996086,0.00031527513,0.00015625395,0.0000015757774,0.00002866646],"genre_scores_gemma":[0.9989051,0.00045398317,0.000114296534,0.00010110772,0.00004062528,0.000050945597,0.00030539406,0.0000073256983,0.000021194699],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99925697,0.000022437911,0.00026228128,0.00028111844,0.000051980165,0.00012520897],"domain_scores_gemma":[0.99952865,0.000101057245,0.00014419368,0.00019718167,0.000013958729,0.000014965834],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012705849,0.000121213314,0.00019071135,0.000020363192,0.00004495407,0.0000040835916,0.00013443724,0.00010611385,0.0000041213552],"category_scores_gemma":[0.000040666502,0.00006855745,0.00004775046,0.00008616156,0.00086245127,0.0000025211646,0.0000613528,0.0000635235,2.477718e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003980332,0.00021699353,0.0015116431,0.00008093195,0.000055250322,2.601212e-7,0.000061335464,0.0000086109585,0.99674505,0.00014017212,0.00022699928,0.0005546913],"study_design_scores_gemma":[0.00047833595,0.00029432698,0.0026008002,0.00001913308,0.00004230413,0.000027637936,0.00096392026,0.0000015841639,0.99496216,0.00012404131,0.00040018698,0.00008557086],"about_ca_topic_score_codex":0.000006137762,"about_ca_topic_score_gemma":0.000009698974,"teacher_disagreement_score":0.002084593,"about_ca_system_score_codex":0.00000757867,"about_ca_system_score_gemma":0.000021729413,"threshold_uncertainty_score":0.31777376},"labels":[],"label_agreement":null},{"id":"W3203625209","doi":"10.1128/aem.01683-21","title":"Genetic Determinants of Stress Resistance in Desiccated Salmonella enterica","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada; Alberta Innovates Bio Solutions; Alberta Agriculture and Forestry","keywords":"Desiccation; Salmonella enterica; Salmonella; Gene; Genome; Agar; Bacteria","score_opus":0.01369147773702246,"score_gpt":0.2294431415563811,"score_spread":0.21575166381935865,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3203625209","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973454,0.002023301,0.000043565513,0.000008983274,0.000049842998,0.000096729505,0.00013178028,0.0000023894015,0.00029804977],"genre_scores_gemma":[0.99730355,0.00079750124,0.0014068645,0.00010488862,0.000022156755,0.0000138552405,0.00023194042,0.000014861177,0.00010436691],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991529,0.000044204793,0.00023778138,0.00035889162,0.000020268053,0.00018597269],"domain_scores_gemma":[0.99964565,0.000008360255,0.000072456976,0.00023870727,0.000002803094,0.000032008094],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000036658093,0.00012841182,0.00018600041,0.000018754257,0.000023602492,0.0000032957885,0.00010133278,0.00013600744,0.00002113131],"category_scores_gemma":[0.0000032237538,0.00013502514,0.000028771503,0.000033364493,0.00020950449,0.0000011419994,0.00027018663,0.00004212789,0.0000034193133],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009401687,0.00007584154,0.06457652,0.00002095273,0.000015649475,0.000010452958,0.000040994433,0.0000075540593,0.93411726,0.0000062339127,0.000020127918,0.0010143776],"study_design_scores_gemma":[0.0005711085,0.00005553594,0.0861501,0.000009553214,0.000008566806,0.000051361047,0.000106694,0.0000015048455,0.9098761,0.000032828335,0.0029978314,0.00013883397],"about_ca_topic_score_codex":0.0000055103155,"about_ca_topic_score_gemma":0.00009108568,"teacher_disagreement_score":0.024241196,"about_ca_system_score_codex":0.000015544358,"about_ca_system_score_gemma":0.000014556245,"threshold_uncertainty_score":0.55061656},"labels":[],"label_agreement":null},{"id":"W3204688584","doi":"10.1128/aem.01399-21","title":"A High-Throughput Short Sequence Typing Scheme for Serratia marcescens Pure Culture and Environmental DNA","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Polytechnique Montréal; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Canadian Institutes of Health Research; California HIV/AIDS Research Program; Centre National de la Recherche Scientifique; Aix-Marseille Université","keywords":"Serratia marcescens; Throughput; Typing; DNA; DNA sequencing; Biology; Sequence (biology); Computational biology; Microbiology; Genetics; Computer science; Escherichia coli; Gene","score_opus":0.0096505755161743,"score_gpt":0.20236238390489203,"score_spread":0.19271180838871774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3204688584","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99785215,0.00042724982,0.00011043298,0.00021782125,0.00013420336,0.00040703712,0.0004177082,0.000027001099,0.00040638045],"genre_scores_gemma":[0.99072284,0.00083783804,0.003114903,0.0017900122,0.000057318597,0.000055868277,0.002809146,0.000027677219,0.000584403],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99838257,0.00010168441,0.00026502903,0.0007180157,0.00003514166,0.0004975667],"domain_scores_gemma":[0.99941677,0.00007307474,0.00007087737,0.00031940246,0.0000010810483,0.00011879579],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001249891,0.00033030575,0.00037425078,0.000019061948,0.00050609687,0.000018585228,0.00019998173,0.0003809928,0.0018934766],"category_scores_gemma":[0.000005054804,0.00032430448,0.000061120154,0.000049191007,0.0011285827,0.00009474678,0.00078273984,0.000344432,0.000103182945],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005485951,0.00012342757,0.006737937,0.000020143869,0.00005047137,0.0000066843827,0.00046180468,0.000017032748,0.98881745,0.0002894779,0.0020579945,0.0013627255],"study_design_scores_gemma":[0.0057009445,0.0012625181,0.08000524,0.000057148995,0.00035820948,0.002646839,0.0071883607,0.00035205655,0.3928124,0.008369391,0.49784738,0.0033995067],"about_ca_topic_score_codex":0.000027657095,"about_ca_topic_score_gemma":0.00013470538,"teacher_disagreement_score":0.596005,"about_ca_system_score_codex":0.0001229183,"about_ca_system_score_gemma":0.000008372652,"threshold_uncertainty_score":0.9999209},"labels":[],"label_agreement":null},{"id":"W3205000511","doi":"10.1128/aem.01515-21","title":"Engineering a Lysin with Intrinsic Antibacterial Activity (LysMK34) by Cecropin A Fusion Enhances Its Antibacterial Properties against Acinetobacter baumannii","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Vlaamse regering; Universiteit Antwerpen; Cultural Affairs and Missions Sector, Ministry of Higher Education; Fonds Wetenschappelijk Onderzoek","keywords":"Acinetobacter baumannii; Lysin; Microbiology; Acinetobacter; Antibacterial activity; Biology; Bacteria; Bacteriophage; Antibiotics; Escherichia coli; Genetics; Gene","score_opus":0.004581294815933683,"score_gpt":0.1551800631234282,"score_spread":0.1505987683074945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3205000511","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975827,0.0009175386,0.000055145472,0.00013546595,0.00044629182,0.0003025035,0.0003613193,0.00006810423,0.00013096527],"genre_scores_gemma":[0.9962272,0.0009408741,0.0000964935,0.0002478944,0.000118310294,0.000023893841,0.0014319542,0.00004391239,0.0008694685],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99827,0.00009485924,0.0002872237,0.0007222641,0.000026119516,0.00059956335],"domain_scores_gemma":[0.9995242,0.0000391979,0.000146341,0.00023484562,0.000010019621,0.000045403634],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00007200464,0.00045694417,0.00059933047,0.000065494234,0.0002806715,0.000061530474,0.00014567067,0.00036589798,0.00047265503],"category_scores_gemma":[0.0000052719356,0.0003701925,0.000075722186,0.00007364977,0.00050557556,0.00017989105,0.00031216213,0.0003382708,0.00015063665],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00059626915,0.00024317215,0.00026279074,0.000050735736,0.00020938035,0.000013194918,0.00023644776,0.0000039690517,0.994213,0.00001896298,0.00055933045,0.0035927575],"study_design_scores_gemma":[0.0018291762,0.00017753444,0.002362499,0.000061920095,0.000055439374,0.00024319658,0.00023757457,0.0000018040442,0.96757716,0.0000012061627,0.026960777,0.00049171626],"about_ca_topic_score_codex":0.00002698505,"about_ca_topic_score_gemma":0.000012840575,"teacher_disagreement_score":0.026635833,"about_ca_system_score_codex":0.000060064907,"about_ca_system_score_gemma":0.000035240875,"threshold_uncertainty_score":0.999875},"labels":[],"label_agreement":null},{"id":"W3205756377","doi":"10.1128/aem.01782-21","title":"Arbuscular Mycorrhizal Tree Communities Have Greater Soil Fungal Diversity and Relative Abundances of Saprotrophs and Pathogens than Ectomycorrhizal Tree Communities","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"U.S. Department of Energy; Manitoba Medical Service Foundation; National Science Foundation","keywords":"Biology; Arbuscular mycorrhizal fungi; Mycorrhizal fungi; Fungal Diversity; Abundance (ecology); Soil fungi; Ectomycorrhiza; Ecology; Relative species abundance; Arbuscular mycorrhizal; Soil microbiology; Mycorrhiza; Botany; Symbiosis; Soil water; Bacteria; Inoculation","score_opus":0.010534174671285807,"score_gpt":0.1617252915546692,"score_spread":0.15119111688338338,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3205756377","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936865,0.0017049733,0.000004937198,0.000073949464,0.00005708232,0.00015329605,0.0030884685,0.000016677002,0.0012141132],"genre_scores_gemma":[0.99209595,0.0050281105,0.00008127989,0.00013870109,0.00003837716,0.000011391254,0.0024754326,0.0000023682114,0.00012841535],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99913365,0.00016213338,0.00019504986,0.0002209845,0.000049664355,0.00023854658],"domain_scores_gemma":[0.99904287,0.00069671456,0.00009046306,0.00008696572,0.000008530277,0.00007443347],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000083894505,0.00022044219,0.00032759763,0.000020031,0.0008221476,0.000025233907,0.000118913216,0.00015400375,0.0006374277],"category_scores_gemma":[0.0000041744934,0.00011806342,0.000062638144,0.000040921517,0.00023214931,0.00009162414,0.0006515159,0.00023303987,0.000011169418],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009800518,0.00006664144,0.60728997,0.000013285641,0.00006123393,0.000009766758,0.0024443425,0.0000015737166,0.38817248,0.0003218987,0.000038333263,0.0014824712],"study_design_scores_gemma":[0.0007015048,0.0008860346,0.87234586,0.00011062855,0.00024111205,0.0013437557,0.07250068,0.00010242409,0.04485705,0.001736422,0.004351484,0.00082304486],"about_ca_topic_score_codex":0.0017191735,"about_ca_topic_score_gemma":0.0019094064,"teacher_disagreement_score":0.34331542,"about_ca_system_score_codex":0.000016478136,"about_ca_system_score_gemma":0.000003109156,"threshold_uncertainty_score":0.6979387},"labels":[],"label_agreement":null},{"id":"W3207416707","doi":"10.1128/aem.01723-21","title":"Brussowvirus SW13 Requires a Cell Surface-Associated Polysaccharide To Recognize Its Streptococcus thermophilus Host","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"Science Foundation Ireland","keywords":"Streptococcus thermophilus; Complementation; Lactococcus lactis; Gene; Gene cluster; Bacteriophage; Bacteria; Locus (genetics); Fermentation starter; Fermentation","score_opus":0.008143856104972131,"score_gpt":0.16424654032632163,"score_spread":0.1561026842213495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3207416707","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99662566,0.00028614994,4.9141437e-7,0.0005773124,0.00011681271,0.00053195626,0.0010630604,0.0000474437,0.0007511331],"genre_scores_gemma":[0.99754614,0.000111464826,0.000024449748,0.001358604,0.000040867275,0.000054206845,0.0004517446,0.0000040760697,0.00040844257],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99861544,0.00007892524,0.00024164989,0.0005293299,0.00007051073,0.00046411724],"domain_scores_gemma":[0.9996175,0.00006805478,0.000106854895,0.00007372503,0.0000028150876,0.00013106037],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00016566369,0.00022733655,0.00024490373,0.000015002002,0.0004904079,0.000025395237,0.0002690163,0.00011683018,0.001838717],"category_scores_gemma":[0.0000031968723,0.00011951703,0.00006487188,0.00014123917,0.000077036835,0.000026875416,0.00062030175,0.00022167146,0.00014496132],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000061678125,0.00022734344,0.0013009786,0.00000162988,0.000025265537,0.000004678947,0.00013237742,0.000016099035,0.99406314,0.00003500837,0.00027223397,0.0038595635],"study_design_scores_gemma":[0.0027668208,0.0039855815,0.17714255,0.000015702402,0.00011931283,0.00008583108,0.004507899,0.000055911594,0.72917193,0.00051960384,0.07952756,0.0021013238],"about_ca_topic_score_codex":0.00008402802,"about_ca_topic_score_gemma":0.00004052719,"teacher_disagreement_score":0.26489124,"about_ca_system_score_codex":0.00011796933,"about_ca_system_score_gemma":0.000004783413,"threshold_uncertainty_score":0.99907374},"labels":[],"label_agreement":null},{"id":"W3208625222","doi":"10.1128/aem.01522-21","title":"A Novel Actinobacterial Cutinase Containing a Noncatalytic Polymer-Binding Domain","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"biodegradable polymer synthesis and properties","field":"Materials Science","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; National Research Council Canada","funders":"","keywords":"Cutinase; Cutin; Biochemistry; Escherichia coli; Chemistry; Fusion protein; Depolymerization; Linker; Amino acid; Biology; Stereochemistry; Enzyme; Gene; Organic chemistry; Recombinant DNA","score_opus":0.011015334623137044,"score_gpt":0.1836436420189639,"score_spread":0.17262830739582685,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3208625222","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99616,0.0023457485,0.00008431354,0.00015097615,0.00023927727,0.0000767326,0.00024230054,0.000028687164,0.00067200244],"genre_scores_gemma":[0.9981712,0.000052949563,0.00089006504,0.00036103206,0.00009368284,0.000020933257,0.00016637945,0.00001870915,0.00022504068],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99887675,0.00003923211,0.00021951385,0.00044580371,0.000039768373,0.0003789207],"domain_scores_gemma":[0.99959236,0.000056230885,0.000081947604,0.00018852697,0.0000016524092,0.00007926844],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001266649,0.00019649981,0.00027152,0.000026368567,0.0002540548,0.0000571253,0.000113551105,0.00012643936,0.0008442631],"category_scores_gemma":[0.0000034490804,0.00016919455,0.000041885643,0.000033629385,0.00030194927,0.000057478777,0.00023827872,0.00009521315,0.00015657062],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009407022,0.0000746838,0.00017373406,0.000009515695,0.00001678883,0.000009985787,0.00045520416,4.5022137e-8,0.9954399,0.00022403635,0.000021169346,0.0034808964],"study_design_scores_gemma":[0.0006584414,0.00004920235,0.00013009958,0.000011668661,0.00002173622,0.00041179534,0.0018328791,0.0000016249131,0.9926468,0.000016628524,0.003991868,0.00022724902],"about_ca_topic_score_codex":0.000055204408,"about_ca_topic_score_gemma":0.000009507643,"teacher_disagreement_score":0.0039706985,"about_ca_system_score_codex":0.000040679843,"about_ca_system_score_gemma":0.000024357136,"threshold_uncertainty_score":0.9244089},"labels":[],"label_agreement":null},{"id":"W3210325930","doi":"10.1128/aem.01733-21","title":"Induction of the Viable-but-Nonculturable State in <i>Salmonella</i> Contaminating Dried Fruit","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Institute for the Advancement of Food and Nutrition Sciences","keywords":"Salmonella; Viable but nonculturable; Population; Inoculation; Dried fruit; Food preservation; Bacteria","score_opus":0.0072630927524073435,"score_gpt":0.16271404683251983,"score_spread":0.1554509540801125,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3210325930","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99869496,0.00031454096,0.0000014729208,0.00021132777,0.00009700886,0.00013737947,0.000061021117,0.0000082230445,0.00047406665],"genre_scores_gemma":[0.99886423,0.00021662845,0.00003024075,0.00048279975,0.00003164375,0.000012726447,0.00014592323,0.0000012095542,0.0002146045],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990191,0.00012149478,0.0002701991,0.00030840433,0.000030754156,0.00025005752],"domain_scores_gemma":[0.9996482,0.00013569061,0.00011698478,0.000062579245,0.000004065071,0.000032481064],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001491483,0.00012169197,0.00024555807,0.0000057848506,0.000092453265,0.0000068010477,0.00011429872,0.00013452552,0.000120164],"category_scores_gemma":[0.00000882806,0.00005187778,0.000046898287,0.000109399625,0.0002137474,0.000027649932,0.00016843514,0.0001516924,0.000008744529],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000105783265,0.00005222017,0.0655439,0.0000034397826,0.000008732252,0.0000017421024,0.00009194379,0.000008466717,0.9257112,0.00005110937,0.000028828917,0.008487811],"study_design_scores_gemma":[0.0003857541,0.00005717629,0.3905241,0.000011236592,0.000010417359,0.00008828887,0.0021218332,0.000004336563,0.60146874,0.000838154,0.004324969,0.00016499101],"about_ca_topic_score_codex":0.00015762418,"about_ca_topic_score_gemma":0.00027752694,"teacher_disagreement_score":0.3249802,"about_ca_system_score_codex":0.000030039433,"about_ca_system_score_gemma":0.000004265652,"threshold_uncertainty_score":0.21155146},"labels":[],"label_agreement":null},{"id":"W3210749319","doi":"10.1128/aem.01485-21","title":"Golden Gate Assembly of Aerobic and Anaerobic Microbial Bioreporters","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"bioluminescence and chemiluminescence research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Bioreporter; Biosensor; Reporter gene; Escherichia coli; Synthetic biology; Biology; Green fluorescent protein; Analyte; Computational biology; Gene; Chemistry; Genetics; Biochemistry; Gene expression","score_opus":0.005265249110798779,"score_gpt":0.20149538115386287,"score_spread":0.19623013204306408,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3210749319","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977332,0.0017823101,0.000023759005,0.00008104047,0.000038437087,0.000102419384,0.00004434334,0.000004302189,0.00019022732],"genre_scores_gemma":[0.9966216,0.0017769341,0.00039181832,0.0002115899,0.00005421603,0.000009310749,0.0006679431,0.000015417276,0.00025115444],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989959,0.000025427136,0.0002140626,0.00046424445,0.000033571327,0.00026680873],"domain_scores_gemma":[0.9996173,0.000008471562,0.00006824455,0.00021825028,0.000008152137,0.000079617486],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000686002,0.00016668298,0.0002083648,0.000027486562,0.00005682658,0.000010093043,0.00009105979,0.00021035312,0.000026690934],"category_scores_gemma":[0.0000050510175,0.00016105866,0.000045556953,0.000048868842,0.0005371428,0.0000040147384,0.0002696104,0.00008690123,0.000005518894],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003484629,0.00006544832,0.004068767,0.000029198714,0.000037289392,0.000008085024,0.0000229706,3.7373601e-7,0.9937556,0.000027907376,0.00027224922,0.0016772723],"study_design_scores_gemma":[0.00054685335,0.00009678876,0.0045016254,0.000009095318,0.000021506701,0.00031432652,0.00029532897,0.0000012520942,0.9895409,0.000009445953,0.0044834055,0.00017951927],"about_ca_topic_score_codex":0.000010259334,"about_ca_topic_score_gemma":0.000010271403,"teacher_disagreement_score":0.00421474,"about_ca_system_score_codex":0.000010069738,"about_ca_system_score_gemma":0.000028219629,"threshold_uncertainty_score":0.65677816},"labels":[],"label_agreement":null},{"id":"W3210879384","doi":"10.1128/aem.01566-21","title":"Cell Surface Xyloglucan Recognition and Hydrolysis by the Human Gut Commensal Bacteroides uniformis","year":2021,"lang":"en","type":"review","venue":"Applied and Environmental Microbiology","topic":"Polysaccharides and Plant Cell Walls","field":"Agricultural and Biological Sciences","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC; Government of Canada","keywords":"Xyloglucan; Bacteroidetes; Glycan; Biology; Bacteroides; Bacteroidaceae; Polysaccharide; Microbiology; Gene; Biochemistry; Bacteria; Genetics; 16S ribosomal RNA; Glycoprotein","score_opus":0.021466113499430853,"score_gpt":0.19519881200022687,"score_spread":0.17373269850079603,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3210879384","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.30458966,0.69258434,1.1070022e-7,0.000045613397,0.000030293284,0.0002520899,0.002323066,0.00001125094,0.00016355382],"genre_scores_gemma":[0.03090343,0.95326495,0.000010435719,0.00026487422,0.000065387874,0.00001828359,0.015140673,0.0000037068935,0.00032827206],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99872255,0.00013267668,0.0003062217,0.00048574636,0.000035493616,0.00031730311],"domain_scores_gemma":[0.9993808,0.00026722715,0.00018931176,0.000078303616,0.0000014227115,0.00008292792],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014573822,0.00035538952,0.0007185352,0.000007324631,0.00033795065,0.000057096593,0.00018712315,0.00034283564,0.00049977284],"category_scores_gemma":[7.9400223e-7,0.00013150356,0.00012621601,0.000057661484,0.00023540229,0.00002400038,0.00022497689,0.00028704712,0.000044887795],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000015706763,0.00004611159,0.000027131093,0.000103654595,0.000052390744,0.0000021807518,0.000020539117,2.7824973e-8,0.5942569,0.000002784696,0.0014565319,0.4040302],"study_design_scores_gemma":[0.000100594785,0.000070754635,0.00003558207,0.00012242398,0.00025595643,0.00015476985,0.00017521219,3.035932e-7,0.0011731787,0.000029400397,0.997507,0.00037485198],"about_ca_topic_score_codex":0.00019406831,"about_ca_topic_score_gemma":0.000037831607,"teacher_disagreement_score":0.9960504,"about_ca_system_score_codex":0.000028003738,"about_ca_system_score_gemma":0.0000031993281,"threshold_uncertainty_score":0.54721624},"labels":[],"label_agreement":null},{"id":"W3211785209","doi":"10.1128/aem.02083-21","title":"Genus-Specific Carbon Fixation Activity Measurements Reveal Distinct Responses to Oxygen among Hydrothermal Vent<i>Campylobacteria</i>","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Metal Extraction and Bioleaching","field":"Engineering","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Meteorological and Oceanographic Society; Natural Sciences and Engineering Research Council of Canada; Government of Canada; National Aeronautics and Space Administration; National Science Foundation","keywords":"Hydrothermal vent; Hydrothermal circulation; Microbial population biology; Carbon fibers; Gammaproteobacteria; Oxygen; Dominance (genetics); Carbon fixation","score_opus":0.01265205121796919,"score_gpt":0.1869275758484633,"score_spread":0.17427552463049412,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3211785209","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975021,0.00021563124,0.0001581949,0.000029498326,0.0002275605,0.00016959944,0.00006258192,0.000055619872,0.0015792071],"genre_scores_gemma":[0.9992704,0.000060724215,0.00014545034,0.0000861,0.000078446246,0.0000236566,0.0001441062,0.000023103068,0.00016805342],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99922,0.00006304402,0.0001589366,0.00028629118,0.00004755257,0.00022413606],"domain_scores_gemma":[0.9997119,0.00002099599,0.00003423602,0.00014826773,0.000001834686,0.000082785744],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000119931596,0.00017139812,0.0001758544,0.000034756766,0.00007833621,0.000021027758,0.000058206868,0.00009283829,0.00011466112],"category_scores_gemma":[0.0000033272256,0.00017209045,0.00003500861,0.0000450911,0.00005346351,0.000037722515,0.00006102438,0.00013511222,0.000044501277],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005438028,0.000038241196,0.0055518295,0.000010313287,0.000031647938,0.0000049490636,0.00006942657,0.000059691527,0.9838519,0.0000042512975,0.00007681351,0.010246572],"study_design_scores_gemma":[0.00047237184,0.000032030413,0.30970347,0.0000126772175,0.000019040035,0.00006293407,0.000079980586,0.00007326168,0.65939003,0.000008143947,0.029814512,0.00033156545],"about_ca_topic_score_codex":0.000010396054,"about_ca_topic_score_gemma":0.000014121474,"teacher_disagreement_score":0.32446188,"about_ca_system_score_codex":0.000102948725,"about_ca_system_score_gemma":0.000003828395,"threshold_uncertainty_score":0.7017645},"labels":[],"label_agreement":null},{"id":"W3211825579","doi":"10.1128/aem.01707-21","title":"Fucosylated Human Milk Oligosaccharide Foraging within the Species Bifidobacterium pseudocatenulatum Is Driven by Glycosyl Hydrolase Content and Specificity","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Infant Nutrition and Health","field":"Nursing","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Glycomics Centre; University of Alberta","funders":"National Institute of Environmental Health Sciences; National Center for Complementary and Integrative Health; National Institute of Diabetes and Digestive and Kidney Diseases; University of California, Davis; National Institutes of Health","keywords":"Glycoside hydrolase; Bifidobacterium longum; Enzyme; Bifidobacterium; Oligosaccharide; Gene","score_opus":0.015690264996892814,"score_gpt":0.2094730436446684,"score_spread":0.1937827786477756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3211825579","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99382675,0.0009051636,0.000012058276,0.003949366,0.00023974017,0.0002316468,0.00046404926,0.000034910652,0.00033633248],"genre_scores_gemma":[0.99219155,0.00038818707,0.00009932502,0.0061479546,0.00008262957,0.00001444203,0.00082154555,0.000024338677,0.0002300018],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986841,0.00006863215,0.00034074966,0.00048480794,0.000051452895,0.00037026967],"domain_scores_gemma":[0.9994983,0.00003650274,0.00013149275,0.00022430815,0.000005647209,0.000103736646],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001120199,0.00023985493,0.00030476387,0.00003814088,0.0005231153,0.000056244065,0.000099349505,0.00015494783,0.00022578615],"category_scores_gemma":[0.0000017972967,0.00019618972,0.000047723333,0.00005393678,0.00038951306,0.000049979455,0.00014041853,0.00029564628,0.00003410003],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009718155,0.00009329629,0.0030737622,0.000023688488,0.000029751915,0.000008249626,0.00089610764,7.2583583e-7,0.9915857,0.00037089727,0.0036161244,0.00020457045],"study_design_scores_gemma":[0.0024231768,0.00016736372,0.015077062,0.000030487334,0.00007134945,0.00046505834,0.004076241,0.00007678604,0.917763,0.0005674103,0.058793925,0.0004881698],"about_ca_topic_score_codex":0.000057219924,"about_ca_topic_score_gemma":0.000029324912,"teacher_disagreement_score":0.07382268,"about_ca_system_score_codex":0.00008142771,"about_ca_system_score_gemma":0.0000061871306,"threshold_uncertainty_score":0.80003846},"labels":[],"label_agreement":null},{"id":"W3213916538","doi":"10.1128/aem.01906-21","title":"Ultrastructure of Organohalide-Respiring <i>Dehalococcoidia</i> Revealed by Cryo-Electron Tomography","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Environmental remediation with nanomaterials","field":"Engineering","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Ultrastructure; Cytoplasm; Extracellular; Cell wall; Strain (injury); Paracrystalline; Cytoskeleton; Transmission electron microscopy; Flagellum; Cell","score_opus":0.001405525688357858,"score_gpt":0.14420820510543053,"score_spread":0.14280267941707267,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3213916538","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99702805,0.001937574,0.00011668099,0.000015338557,0.00011371867,0.00015189679,0.00027981962,0.000049633574,0.00030725708],"genre_scores_gemma":[0.9977482,0.0010157253,0.00042154628,0.00010722524,0.000034008313,0.000018156792,0.0005837635,0.0000377807,0.000033577144],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990732,0.000026663862,0.00030094644,0.0002753308,0.000046956462,0.00027687792],"domain_scores_gemma":[0.9996582,0.00003852833,0.00006093674,0.00017455783,0.0000013992693,0.00006633281],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000053598826,0.0002105236,0.00029068673,0.000039831553,0.000041652653,0.000008574513,0.00008605536,0.00016104401,0.00028369704],"category_scores_gemma":[0.000002486109,0.00021875174,0.00004343408,0.000073712996,0.0001668385,0.000037154477,0.000059629987,0.00010445262,0.000020482741],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000007608977,0.000026628775,0.0077135055,0.000035425026,0.00004773155,0.0000022582294,0.00006635838,0.00009942575,0.9910086,0.000020040285,0.00045279923,0.00051965367],"study_design_scores_gemma":[0.00048686934,0.00002757567,0.0111462185,0.0000064624624,0.000022619903,0.000049966788,0.000087575885,0.000002877407,0.98344463,0.00004654216,0.004477907,0.00020073554],"about_ca_topic_score_codex":0.0000018628523,"about_ca_topic_score_gemma":0.000001182962,"teacher_disagreement_score":0.0075639146,"about_ca_system_score_codex":0.00005124104,"about_ca_system_score_gemma":0.000004060312,"threshold_uncertainty_score":0.8920437},"labels":[],"label_agreement":null},{"id":"W3215287307","doi":"10.1128/aem.01993-21","title":"Heterologous Expression of Active <i>Dehalobacter</i> Respiratory Reductive Dehalogenases in Escherichia coli","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Heterologous; Heterologous expression; Escherichia coli; Cofactor; Enzyme; Obligate; Bacteria; Active site; Yeast","score_opus":0.0067335698837842125,"score_gpt":0.18765646077129897,"score_spread":0.18092289088751476,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3215287307","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99868435,0.000120206685,0.0000035525075,0.0000322075,0.0000637154,0.00016557786,0.00023110285,0.000008901879,0.00069037074],"genre_scores_gemma":[0.99856526,0.00012878589,0.0003240221,0.00071141036,0.000013719582,0.0000072794974,0.00020563886,0.000010331763,0.000033576336],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99893135,0.00008949518,0.00025850988,0.00042954006,0.00004713913,0.00024398004],"domain_scores_gemma":[0.99962676,0.00003548713,0.00011532732,0.00015752637,0.0000014793139,0.00006339985],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000066638844,0.00016459725,0.00023523468,0.000025204881,0.000046614572,0.000004359704,0.000099100296,0.00016858685,0.0008489401],"category_scores_gemma":[0.000006680004,0.00015193495,0.000035640765,0.00009072921,0.00048567943,0.000052045692,0.00027337632,0.00013687827,0.000058644317],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000075897704,0.00023926939,0.020416774,0.0000041423714,0.000006611794,0.000009222291,0.00029400704,0.000011338651,0.97719425,0.000004975917,0.0001884373,0.0015550693],"study_design_scores_gemma":[0.0005440976,0.000056843608,0.14304307,0.0000055961245,0.0000062293993,0.0000134517495,0.00056366634,6.739141e-7,0.85292864,0.000030403584,0.0026684916,0.00013881948],"about_ca_topic_score_codex":0.0000255538,"about_ca_topic_score_gemma":0.000067557296,"teacher_disagreement_score":0.1242656,"about_ca_system_score_codex":0.000098748336,"about_ca_system_score_gemma":0.000008739406,"threshold_uncertainty_score":0.9295299},"labels":[],"label_agreement":null},{"id":"W3217497760","doi":"10.1128/aem.01455-21","title":"Seasonal Dynamics of Methanotrophic Bacteria in a Boreal Oil Sands End Pit Lake","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Atmospheric and Environmental Gas Dynamics","field":"Environmental Science","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Syncrude","keywords":"Methanotroph; Hypolimnion; Methane monooxygenase; Water column; Biology; Ecology; Biogeochemical cycle; Epilimnion; Anaerobic oxidation of methane; Environmental science; Methane; Eutrophication","score_opus":0.0029585322893382355,"score_gpt":0.16623941325079153,"score_spread":0.1632808809614533,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3217497760","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99429876,0.00012999278,0.0002423083,0.00010600752,0.00006527084,0.00007024243,0.00014411123,0.000012010023,0.0049313274],"genre_scores_gemma":[0.9913876,0.0006601991,0.006377375,0.0002754254,0.000017658109,0.000018897888,0.00069912145,0.000027499482,0.0005362443],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99854016,0.00005786633,0.00034229874,0.00055352185,0.000092614144,0.00041351514],"domain_scores_gemma":[0.9994993,0.000041113028,0.00010798104,0.0002441863,5.9615945e-7,0.00010679332],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00011259881,0.00026840964,0.00036800586,0.000012009517,0.00006251646,0.000008072326,0.00015987983,0.00021119193,0.003164279],"category_scores_gemma":[0.0000028363288,0.00026949457,0.000066614164,0.00011539511,0.0008642925,0.00006278375,0.00052334514,0.00020343038,0.000056268236],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007572144,0.00035810846,0.19706999,0.000019395664,0.000037793576,0.000042503292,0.0002247065,0.001366053,0.7540154,0.000344933,0.000032011445,0.046413403],"study_design_scores_gemma":[0.0031354555,0.00022446313,0.96168107,0.00002759069,0.00008779064,0.0004784489,0.0013704277,0.0032740708,0.015876835,0.0009402937,0.011881358,0.0010222071],"about_ca_topic_score_codex":0.00008840583,"about_ca_topic_score_gemma":0.00040814173,"teacher_disagreement_score":0.76461107,"about_ca_system_score_codex":0.00022592618,"about_ca_system_score_gemma":0.000009311536,"threshold_uncertainty_score":0.99997574},"labels":[],"label_agreement":null},{"id":"W36975795","doi":"10.1128/aem.00261-23","title":"Sedimentologic and Diagenetic Analysis of Microbialite-bearing Lacustrine Rift Sequence in the Lower Cretaceous Yucca Formation, Indio Mountains, West Texas-An Outcrop Analog to Presalt Microbialite Reservoirs","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Paleontology and Stratigraphy of Fossils","field":"Earth and Planetary Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Geology; Outcrop; Diagenesis; Sequence (biology); Cretaceous; Paleontology; Rift; Sedimentology; Geomorphology; Geochemistry","score_opus":0.012268600761778102,"score_gpt":0.20882234270660444,"score_spread":0.19655374194482633,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W36975795","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99726945,0.0009884487,0.0000488202,0.00014633898,0.000044370794,0.00032251026,0.00033866684,0.000009675472,0.00083168794],"genre_scores_gemma":[0.99846417,0.000173732,0.00036406156,0.0004882404,0.000022798815,0.0000048309385,0.00046959278,0.0000020003856,0.000010583148],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984664,0.00026297776,0.0003981939,0.00043699396,0.000059558355,0.00037589206],"domain_scores_gemma":[0.99933004,0.00015867075,0.00013912114,0.00026824558,0.0000048409506,0.00009907075],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005603483,0.00022023803,0.0004014955,0.00024769478,0.00016436112,0.000036372516,0.00029544366,0.00018768071,0.0001037468],"category_scores_gemma":[0.000010771851,0.00016498024,0.000055974077,0.00027800325,0.000509846,0.00009985309,0.00002122353,0.00019204133,0.000009172371],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000119515935,0.00008475136,0.7975975,0.000022535436,0.00014253914,0.000007722073,0.0018734212,0.0009218317,0.18952423,0.000068170084,0.000039795486,0.009597956],"study_design_scores_gemma":[0.0004103099,0.00033328825,0.99549514,0.0000065275235,0.00015219486,0.000040697883,0.00045438984,0.00024870667,0.0014839004,0.0000861549,0.0010789739,0.00020972246],"about_ca_topic_score_codex":0.0008035688,"about_ca_topic_score_gemma":0.0075840806,"teacher_disagreement_score":0.19789761,"about_ca_system_score_codex":0.000007877329,"about_ca_system_score_gemma":0.0000076190945,"threshold_uncertainty_score":0.6727699},"labels":[],"label_agreement":null},{"id":"W4200330384","doi":"10.1128/aem.01972-21","title":"Endosymbiotic Male-Killing <i>Spiroplasma</i> Affects the Physiological and Behavioral Ecology of <i>Macrocheles</i> - <i>Drosophila</i> Interactions","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Spiroplasma; Biology; Drosophila (subgenus); Mite; Drosophila melanogaster; Zoology; Mating; Hemolymph; Muscidae; Longevity; Ecology; Genetics; Bacteria","score_opus":0.010766500429691064,"score_gpt":0.19425504591532772,"score_spread":0.18348854548563664,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200330384","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986716,0.00027052683,2.2699936e-7,0.00045126287,0.00013409299,0.00014247857,0.00015375511,0.000011861563,0.00016422289],"genre_scores_gemma":[0.99825555,0.0004585545,0.000043021373,0.00086406944,0.0000985536,0.000016578162,0.00022564076,0.0000015091249,0.00003653928],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99908686,0.00007985637,0.00019914449,0.00034935048,0.00003127019,0.00025349308],"domain_scores_gemma":[0.9996117,0.00017252883,0.00010214548,0.000059163816,0.000004664847,0.000049803806],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007328926,0.00016989854,0.00026517027,0.0000058840933,0.00025320376,0.00002297223,0.0001088032,0.00013253266,0.0002775704],"category_scores_gemma":[0.0000028504153,0.000067787594,0.0000610702,0.000059994265,0.00055539515,0.000037911967,0.00022017596,0.00015540596,0.000010036193],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019965099,0.00014188664,0.006528358,0.000005117513,0.00001551827,0.0000046570785,0.000051249892,6.6531214e-7,0.99020576,0.00014381965,0.000065099484,0.0028178813],"study_design_scores_gemma":[0.00036147342,0.0004471845,0.13555615,0.000013357791,0.00006115333,0.0006714148,0.0010173108,0.0000036094993,0.855144,0.00023319604,0.0062034535,0.00028765903],"about_ca_topic_score_codex":0.00002716484,"about_ca_topic_score_gemma":0.00009272102,"teacher_disagreement_score":0.13506174,"about_ca_system_score_codex":0.000011548916,"about_ca_system_score_gemma":0.0000033076378,"threshold_uncertainty_score":0.30392012},"labels":[],"label_agreement":null},{"id":"W4200348711","doi":"10.1128/aem.01889-21","title":"Efficacy of Organic Peroxyacids for Eliminating Biofilm Preformed by Microorganisms Isolated from Dairy Processing Plants","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biofilm; Microorganism; Bacteria; Dairy industry; Pseudomonas","score_opus":0.0039566562871341665,"score_gpt":0.1826834762433677,"score_spread":0.17872681995623352,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200348711","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975817,0.0011642041,0.00030243173,0.000037517344,0.00007894821,0.0001913231,0.0006021906,0.000008296859,0.000033372242],"genre_scores_gemma":[0.9906348,0.00022326443,0.0017581152,0.00021217343,0.00007898417,0.0000059382896,0.0069876453,0.000030264395,0.00006880306],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99901044,0.000020948155,0.0002474273,0.00044208742,0.000021549034,0.00025757097],"domain_scores_gemma":[0.99965507,0.00001923102,0.00011944569,0.00015035136,0.0000064976225,0.00004938084],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004593064,0.00018580462,0.00023089943,0.000014627951,0.00010828168,0.000013535545,0.0000775156,0.0002668385,0.000039794417],"category_scores_gemma":[0.0000071790964,0.00017662016,0.000045626657,0.00002526257,0.00015733008,0.000003519644,0.00014583548,0.00006629158,0.0000029768935],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018609548,0.00009416603,0.0003261443,0.000020004169,0.00005802994,7.4066395e-7,0.00011662371,3.2646312e-7,0.99231106,0.0000014056267,0.00016119893,0.0067241876],"study_design_scores_gemma":[0.0014651744,0.00016309792,0.0010154566,0.000015395173,0.00003139986,0.00004214717,0.0004022932,0.000006479637,0.99236757,0.0000059230906,0.0042761215,0.00020892223],"about_ca_topic_score_codex":0.0000054733005,"about_ca_topic_score_gemma":0.000005174528,"teacher_disagreement_score":0.006946904,"about_ca_system_score_codex":0.000014551922,"about_ca_system_score_gemma":0.00002513875,"threshold_uncertainty_score":0.7202361},"labels":[],"label_agreement":null},{"id":"W4205527260","doi":"10.1128/aem.01535-21","title":"Spt20, a Structural Subunit of the SAGA Complex, Regulates Aspergillus fumigatus Biofilm Formation, Asexual Development, and Virulence","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity; McGill University Health Centre","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Fonds de recherche du Québec; Priority Academic Program Development of Jiangsu Higher Education Institutions; National Natural Science Foundation of China; Government of Canada","keywords":"Conidiation; Biology; Biofilm; Aspergillus fumigatus; Virulence; Protein subunit; Fungal protein; Cell biology; Microbiology; Gene; Saccharomyces cerevisiae; Genetics; Bacteria","score_opus":0.014061567917146498,"score_gpt":0.2068427377939055,"score_spread":0.192781169876759,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4205527260","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998694,0.0006312907,0.0000119713495,0.00010725931,0.000029583818,0.00014944228,0.00006414161,0.0000067879,0.00030553713],"genre_scores_gemma":[0.99841386,0.00011552908,0.00060320616,0.00032825334,0.000013375068,0.0000032280875,0.00026681062,0.0000062945987,0.00024943016],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99932873,0.000025408182,0.00021665676,0.00022051869,0.00004334005,0.00016536837],"domain_scores_gemma":[0.9996851,0.000028506742,0.00006622009,0.00016509877,0.0000057755788,0.000049277605],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000057303452,0.00011959531,0.0002131589,0.00001941796,0.00013691104,0.0000052501396,0.00004725236,0.0000857837,0.00013683912],"category_scores_gemma":[0.000006210736,0.000083271545,0.000026033667,0.00005135093,0.0005487646,0.00002896786,0.00013613487,0.00009833281,0.000005982708],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006596184,0.000026755079,0.040681127,0.000057869405,0.000028161985,0.0000026702003,0.00036205957,5.076061e-7,0.9543481,0.00024108058,0.000048516587,0.004137177],"study_design_scores_gemma":[0.00064897316,0.000037598136,0.5765688,0.000017589924,0.000026989856,0.0002000687,0.0011750011,0.000012679769,0.41770145,0.000105992105,0.0034055593,0.00009929059],"about_ca_topic_score_codex":0.000004902822,"about_ca_topic_score_gemma":0.00002044492,"teacher_disagreement_score":0.53664666,"about_ca_system_score_codex":0.000035043435,"about_ca_system_score_gemma":0.000025817832,"threshold_uncertainty_score":0.3395715},"labels":[],"label_agreement":null},{"id":"W4205973833","doi":"10.1128/aem.01604-21","title":"Bacterial Biofilm Thickness and Fungal Inhibitory Bacterial Richness Both Prevent Establishment of the Amphibian Fungal Pathogen Batrachochytrium dendrobatidis","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Amphibian and Reptile Biology","field":"Environmental Science","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; University of Colorado Boulder; Government of Canada; Colorado Mountain Club Foundation; Morris Animal Foundation","keywords":"Biofilm; Pathogen; Species richness; Amphibian; Chytridiomycota; Microcosm; Human pathogen; Bacteria","score_opus":0.0038617583629783027,"score_gpt":0.1633893617825558,"score_spread":0.1595276034195775,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4205973833","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99708337,0.0001789501,0.0000068211752,0.00011528161,0.0007873708,0.00059112685,0.0007272592,0.000017481067,0.0004923616],"genre_scores_gemma":[0.9988104,0.00009176652,0.00011731827,0.00022969535,0.000142368,0.00008962313,0.0002574188,0.000025932815,0.00023543801],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9980706,0.00027397578,0.00040938138,0.00067336427,0.00012856287,0.0004441335],"domain_scores_gemma":[0.99925596,0.00005288302,0.0002466625,0.00033018793,0.0000010428932,0.000113253576],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00032120378,0.00030391934,0.0003542243,0.000038090762,0.00047714755,0.00001720811,0.00033505794,0.00019727508,0.0027286517],"category_scores_gemma":[0.0000037186276,0.00023530332,0.00008647469,0.00009711506,0.0012845505,0.00006521943,0.0018052342,0.0003001561,0.000019960227],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016047634,0.00022660932,0.042582497,0.000011917285,0.000027954224,0.000004994161,0.00038894074,0.00002816334,0.953982,0.000048214482,0.00057302864,0.0019652066],"study_design_scores_gemma":[0.0057900543,0.001310493,0.5929226,0.000024338313,0.0002558789,0.0020995662,0.0035922523,0.000030368452,0.2658553,0.00030130066,0.12605737,0.0017604012],"about_ca_topic_score_codex":0.000047569174,"about_ca_topic_score_gemma":0.000032641754,"teacher_disagreement_score":0.6881267,"about_ca_system_score_codex":0.00020093589,"about_ca_system_score_gemma":0.000019849118,"threshold_uncertainty_score":0.998183},"labels":[],"label_agreement":null},{"id":"W4206209718","doi":"10.1128/aem.02151-21","title":"Metagenomic and Metatranscriptomic Responses of Chemical Dispersant Application during a Marine Dilbit Spill","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Fisheries and Oceans Canada; National Research Council Canada; Memorial University of Newfoundland","funders":"Fisheries and Oceans Canada; Canada Foundation for Innovation; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Metagenomics; Dispersant; Biology; Dispersion (optics)","score_opus":0.0036310295060083446,"score_gpt":0.167142991326523,"score_spread":0.16351196182051464,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4206209718","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99904263,0.000121213794,0.00001054752,0.00006692919,0.000025835281,0.00024991579,0.00015050346,0.000011473027,0.0003209523],"genre_scores_gemma":[0.99905545,0.00011654928,0.00021234341,0.00020697553,0.000007579672,0.00006303957,0.00027251523,0.000012639729,0.000052910877],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99907005,0.00012717275,0.0002132595,0.00034162545,0.000028385231,0.00021951058],"domain_scores_gemma":[0.999595,0.00006287599,0.000090901776,0.00020382952,3.443349e-7,0.00004704586],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00015815214,0.00015212012,0.00026238055,0.00003369517,0.00023048496,0.0000024031958,0.00017915024,0.00007023261,0.0028395627],"category_scores_gemma":[0.0000017227939,0.00015393455,0.000038993785,0.000047369907,0.00074503745,0.000021684504,0.0010914053,0.0002245474,0.00002536743],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027977707,0.0000917669,0.007801286,0.000009115533,0.00003399923,0.0000015079648,0.00033191597,0.00003218115,0.99046105,0.00015778124,0.000029532057,0.00077009905],"study_design_scores_gemma":[0.00244875,0.00034678305,0.18835306,0.000001826489,0.00016246049,0.0006290978,0.0009457363,0.00006754458,0.7914289,0.0016591949,0.013307908,0.0006487073],"about_ca_topic_score_codex":0.00012047505,"about_ca_topic_score_gemma":0.000024489802,"teacher_disagreement_score":0.19903211,"about_ca_system_score_codex":0.000085288295,"about_ca_system_score_gemma":0.0000029099729,"threshold_uncertainty_score":0.99807197},"labels":[],"label_agreement":null},{"id":"W4210407393","doi":"10.1128/aem.02432-21","title":"The “Other” <i>Rickettsiales</i> : an Overview of the Family “ <i>Candidatus</i> Midichloriaceae”","year":2022,"lang":"en","type":"review","venue":"Applied and Environmental Microbiology","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Università di Pisa; Gordon and Betty Moore Foundation","keywords":"Biology; Candidatus; Rickettsiales; Context (archaeology); Host (biology); Evolutionary biology; Gammaproteobacteria; Clade; Lineage (genetic); Phylogenetics; Ecology; Genome; Flagellum; Zoology; Genetics; Gene; 16S ribosomal RNA","score_opus":0.055285576423797556,"score_gpt":0.24691387815785582,"score_spread":0.19162830173405826,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210407393","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.039675463,0.95779717,8.994295e-9,0.000054852902,0.00043291843,0.00058795715,0.001148091,0.000012095545,0.0002914169],"genre_scores_gemma":[0.005257042,0.99330306,0.000002222532,0.0005706354,0.00022042751,0.000108068794,0.000475639,0.0000043011237,0.000058602804],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99834925,0.0003148391,0.00048346727,0.00044016438,0.000083024126,0.00032927617],"domain_scores_gemma":[0.999069,0.00029724443,0.00039524326,0.00018691426,0.0000016316624,0.000049997234],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003134628,0.0003455024,0.0007286873,0.0000070949272,0.00073868333,0.000040472372,0.0007657436,0.00023556338,0.0003791345],"category_scores_gemma":[0.0000028352808,0.00009515859,0.0002840604,0.00014097392,0.0006033042,0.000029330055,0.00051257253,0.00028767774,0.000014290976],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013430369,0.0000833836,0.000020113172,0.00015915322,0.000063520485,3.8728177e-7,0.000032432414,4.0985924e-8,0.2206237,0.00048157256,0.00039034855,0.7781319],"study_design_scores_gemma":[0.000058112426,0.00011472923,0.0001881677,0.00009487808,0.00011852365,0.000027586988,0.00017694398,2.5729854e-8,0.00023833572,0.00006389378,0.99869835,0.00022043483],"about_ca_topic_score_codex":0.00018623318,"about_ca_topic_score_gemma":0.00008786169,"teacher_disagreement_score":0.998308,"about_ca_system_score_codex":0.00004287781,"about_ca_system_score_gemma":0.000015494175,"threshold_uncertainty_score":0.56814295},"labels":[],"label_agreement":null},{"id":"W4210475138","doi":"10.1128/aem.00096-22","title":"Comparison of Six Lytic Polysaccharide Monooxygenases from <i>Thermothielavioides terrestris</i> Shows That Functional Variation Underlies the Multiplicity of LPMO Genes in Filamentous Fungi","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fondation Chalmers; Wallenberg Wood Science Center; Novo Nordisk Fonden; Norges Miljø- og Biovitenskapelige Universitet; Norges Forskningsråd; Vetenskapsrådet; Novo Nordisk; Knut och Alice Wallenbergs Stiftelse","keywords":"Polysaccharide; Xylan; Biochemistry; Biology; Cellulose; Cell wall; Xyloglucan; Chemistry; Microbiology","score_opus":0.014895963237442874,"score_gpt":0.1903949609039461,"score_spread":0.1754989976665032,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210475138","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976184,0.0015797733,0.00016567227,0.000036967678,0.00015054295,0.00017897067,0.00023361224,0.000016133088,0.000019949952],"genre_scores_gemma":[0.99941444,0.00021710571,0.00007280883,0.00005910181,0.00002257878,0.000022224453,0.00017062476,0.00000885336,0.0000122697675],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994373,0.000034096756,0.00020537287,0.0001670364,0.000047757654,0.000108472785],"domain_scores_gemma":[0.9997313,0.00007321066,0.00007334337,0.00010836549,8.6484863e-7,0.0000128971105],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006729073,0.00010815412,0.00017093579,0.00004424313,0.00007325972,0.000003533023,0.000081084865,0.000061528044,0.0002727116],"category_scores_gemma":[8.057977e-7,0.000090435955,0.000031002633,0.00003968395,0.00012480702,0.000022488426,0.00009574545,0.00012872765,0.0000025321854],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049358787,0.0000918974,0.021364152,0.00001513157,0.00003309874,1.6848853e-7,0.0005920115,0.0047480077,0.9713211,0.00001295241,0.00012532467,0.0016468081],"study_design_scores_gemma":[0.0006944099,0.00007860831,0.15263702,0.0000051764623,0.000037811864,0.000008257608,0.00629047,0.002771892,0.8356234,0.00013592604,0.001525476,0.0001915598],"about_ca_topic_score_codex":0.00018223794,"about_ca_topic_score_gemma":0.000014359244,"teacher_disagreement_score":0.1356977,"about_ca_system_score_codex":0.000057170197,"about_ca_system_score_gemma":0.0000036862118,"threshold_uncertainty_score":0.36878714},"labels":[],"label_agreement":null},{"id":"W4210879962","doi":"10.1128/aem.02146-21","title":"Novel Application of Survival Models for Predicting Microbial Community Transitions with Variable Selection for Environmental DNA","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Genome Canada","keywords":"Microbiome; Selection (genetic algorithm); Feature selection; Identification (biology); Microbial population biology; Predictive modelling; Microbial ecology; Proportional hazards model; Environmental DNA","score_opus":0.009156975931348298,"score_gpt":0.18132220913753466,"score_spread":0.17216523320618637,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210879962","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.90075684,0.000012015155,0.09476891,0.00004724909,0.00005500841,0.0012380984,0.0027015023,0.000022528004,0.00039787497],"genre_scores_gemma":[0.98670197,0.000005137124,0.008543008,0.00023789272,0.00002130641,0.00059978914,0.0038013454,0.000026945785,0.00006263352],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989038,0.00014621473,0.00026835644,0.00032611674,0.00003957125,0.0003159283],"domain_scores_gemma":[0.9993598,0.00021838896,0.00016504628,0.00020971976,0.0000014325761,0.00004565077],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0003886828,0.00019708546,0.0002887116,0.00003569231,0.0013371337,0.0000041495928,0.00024150773,0.00012580895,0.00040400054],"category_scores_gemma":[0.0000016013944,0.00020976867,0.00005615173,0.00006790508,0.0005622675,0.00006496715,0.0003014405,0.00033048453,0.0000028304187],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048559782,0.0006730239,0.0013647745,0.000019336201,0.000053455213,2.5165457e-8,0.000719001,0.017060297,0.9781089,0.00087356725,0.00011933416,0.0005227074],"study_design_scores_gemma":[0.049761925,0.020779002,0.03445086,0.000041016126,0.0019949966,0.0016842687,0.036927484,0.08852176,0.5320003,0.038294956,0.18941297,0.006130464],"about_ca_topic_score_codex":0.0001892847,"about_ca_topic_score_gemma":0.00025226388,"teacher_disagreement_score":0.44610858,"about_ca_system_score_codex":0.00017681209,"about_ca_system_score_gemma":0.000009700357,"threshold_uncertainty_score":0.999963},"labels":[],"label_agreement":null},{"id":"W4213296771","doi":"10.1128/aem.02061-21","title":"Citizen Science Surveillance of Triazole-Resistant <i>Aspergillus fumigatus</i> in United Kingdom Residential Garden Soils","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Environment Research Council; Wellcome Trust; Sight Research UK; Medical Research Council; Canadian Institute for Advanced Research; Albaha University; UK Research and Innovation","keywords":"Aspergillus fumigatus; Citizen science; Soil water; Biology; Environmental health; Microbiology; Ecology; Medicine; Botany","score_opus":0.01014548527046834,"score_gpt":0.22451801401423147,"score_spread":0.2143725287437631,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4213296771","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979124,0.00029441534,0.000005354184,0.00011389819,0.00007404153,0.00032340232,0.00019617491,0.000012752475,0.0010675722],"genre_scores_gemma":[0.99914646,0.0000883927,0.000060866165,0.00029150458,0.000021280794,0.000020573529,0.00021891338,0.000012502034,0.00013948564],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985961,0.00007312896,0.00036537804,0.00046418354,0.00014622942,0.00035498696],"domain_scores_gemma":[0.99947786,0.00006506388,0.000106600266,0.00026564227,0.0000058416376,0.00007896445],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00057547167,0.00014911687,0.00038445593,0.0001907731,0.00019879662,0.0000060352963,0.0001593725,0.00006499949,0.0002984359],"category_scores_gemma":[0.000017153347,0.00014159971,0.000052590505,0.00028994115,0.0011329182,0.000022720584,0.00031052702,0.00024784185,0.0000052901164],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012156757,0.00014209055,0.042755537,0.000030139927,0.000015441483,0.000019006275,0.00016283682,0.000021686858,0.9549938,0.0003669211,0.00008776285,0.00018914494],"study_design_scores_gemma":[0.008352512,0.0008856444,0.83044666,0.000042110052,0.000056675082,0.0001562349,0.004306102,0.000053469677,0.14410114,0.00030225565,0.010772242,0.00052497344],"about_ca_topic_score_codex":0.00014252028,"about_ca_topic_score_gemma":0.00005186068,"teacher_disagreement_score":0.8108926,"about_ca_system_score_codex":0.000201452,"about_ca_system_score_gemma":0.00007879392,"threshold_uncertainty_score":0.57742685},"labels":[],"label_agreement":null},{"id":"W4220683284","doi":"10.1128/aem.02091-21","title":"Environmental Potential for Microbial 1,4-Dioxane Degradation Is Sparse despite Mobile Elements Playing a Role in Trait Distribution","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Imperial Oil Limited","keywords":"Degradation (telecommunications); Trait; Distribution (mathematics); 1,4-Dioxane; Computer science; Biochemical engineering; Biology; Computational biology; Environmental science; Mathematics; Chemistry; Engineering","score_opus":0.00352991454828101,"score_gpt":0.1575862600124756,"score_spread":0.1540563454641946,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220683284","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962338,0.00028662858,0.00043788267,0.000031272582,0.0001989873,0.00061709963,0.002145108,0.000034169214,0.000015040374],"genre_scores_gemma":[0.99388754,0.00013155656,0.00028472627,0.00013079053,0.00004724569,0.00020761919,0.005242026,0.000020389862,0.000048111735],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99910915,0.000020403248,0.0002312084,0.00032426656,0.00004142674,0.00027352275],"domain_scores_gemma":[0.9998196,0.0000068012196,0.00004320073,0.00009055173,4.1839345e-7,0.00003947323],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009979864,0.00016690836,0.00014572155,0.000053334876,0.00019950714,0.0000098020655,0.00007879098,0.00008992332,0.00043654468],"category_scores_gemma":[2.6516668e-7,0.00019180727,0.000045844605,0.00003619241,0.00007686964,0.000047645575,0.000102884944,0.00015515713,0.0000140499005],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000078354184,0.00010796545,0.00076119823,0.00001790229,0.000020812424,0.0000010205404,0.00017716007,0.0007785631,0.9896207,0.0000047979283,0.0004509469,0.007980603],"study_design_scores_gemma":[0.008710846,0.0006830773,0.01590264,0.000009052616,0.00011147194,0.000325621,0.0063565527,0.008983446,0.63344425,0.00016458188,0.32397085,0.0013375743],"about_ca_topic_score_codex":0.000006911818,"about_ca_topic_score_gemma":0.0000010199863,"teacher_disagreement_score":0.3561764,"about_ca_system_score_codex":0.00025244968,"about_ca_system_score_gemma":0.0000029040377,"threshold_uncertainty_score":0.7821673},"labels":[],"label_agreement":null},{"id":"W4220739758","doi":"10.1128/aem.01740-21","title":"A Sensitive and Rapid Wastewater Test for SARS-COV-2 and Its Use for the Early Detection of a Cluster of Cases in a Remote Community","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Government of Northwest Territories; University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"GeneXpert MTB/RIF; Wastewater; Airborne transmission; Sample (material); Sewage treatment; Transmission (telecommunications); Identification (biology)","score_opus":0.03301256696064645,"score_gpt":0.24400786937870983,"score_spread":0.21099530241806339,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220739758","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988515,0.000102963604,0.00007246587,0.00003893949,0.000018844303,0.00074237154,0.00016256153,0.000004728142,0.000005677024],"genre_scores_gemma":[0.999253,0.000019697329,0.00018409845,0.00046307573,0.00000808003,0.000038767623,0.00001871762,0.000009986607,0.0000046291216],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995493,0.000051335228,0.00015439422,0.00012504138,0.00001643979,0.000103464015],"domain_scores_gemma":[0.9990749,0.0007640423,0.00007243553,0.00007603515,0.000003982,0.000008620922],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019396619,0.000082782215,0.00018254004,0.000051207528,0.00014576838,0.0000030116882,0.000019225994,0.000046015422,9.0688667e-7],"category_scores_gemma":[0.000040513893,0.000064820466,0.000023304807,0.000030312944,0.0001653993,0.000017809061,0.00010481162,0.00013230131,1.1538739e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005995975,0.000061136605,0.00063685986,0.000046318506,0.000026154858,0.0000011736153,0.00086418726,9.3101653e-7,0.9942042,0.0000024182423,0.00000264651,0.0035543786],"study_design_scores_gemma":[0.0023857804,0.0010218625,0.005847491,0.000011348551,0.000054768876,0.00070439157,0.0013869397,0.00056708395,0.9873576,0.000020997837,0.0005783679,0.00006332677],"about_ca_topic_score_codex":0.00024467078,"about_ca_topic_score_gemma":0.000060651906,"teacher_disagreement_score":0.0068465564,"about_ca_system_score_codex":0.0000225494,"about_ca_system_score_gemma":0.0000031747813,"threshold_uncertainty_score":0.2643302},"labels":[],"label_agreement":null},{"id":"W4220765698","doi":"10.1128/aem.00093-22","title":"The Ubiquitous Soil Terpene Geosmin Acts as a Warning Chemical","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biocrusts and Microbial Ecology","field":"Agricultural and Biological Sciences","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"National Institutes of Health; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Geosmin; Biology; Predation; Bacteria; Myxobacteria; Microbiology; Ecology; Odor","score_opus":0.0026543901873925116,"score_gpt":0.1392291593599812,"score_spread":0.13657476917258868,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220765698","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99700534,0.00035002048,1.9060921e-7,0.0013239862,0.00013222634,0.00017179211,0.00007815735,0.000023859651,0.00091440574],"genre_scores_gemma":[0.9970493,0.00015848264,0.000010199456,0.0018306348,0.00009829754,0.00006497415,0.00030049536,0.0000018277034,0.00048579587],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99903226,0.00005613314,0.00015812775,0.0003345619,0.000035203007,0.00038369597],"domain_scores_gemma":[0.9996921,0.000121937235,0.00006955003,0.000054039185,0.0000010877875,0.000061317696],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00014642152,0.00014203884,0.00014855235,0.0000052598666,0.0008698446,0.000021901758,0.00024032217,0.00009269647,0.0009850207],"category_scores_gemma":[0.000002970714,0.000056624227,0.000045995654,0.000046367208,0.0002983618,0.000014646075,0.00063673477,0.00024216673,0.00007100243],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006261158,0.00005688672,0.00013336937,7.281859e-7,0.000012374245,0.000003794343,0.000068774614,0.000003114961,0.9659583,0.0002898063,0.00076438405,0.032645866],"study_design_scores_gemma":[0.00037393207,0.00043580082,0.0029202355,0.0000010121872,0.00001534626,0.00047563552,0.0018020727,0.0000050186104,0.098302074,0.00038453646,0.8950064,0.00027790165],"about_ca_topic_score_codex":0.0000787105,"about_ca_topic_score_gemma":0.000055373777,"teacher_disagreement_score":0.89424205,"about_ca_system_score_codex":0.000057916583,"about_ca_system_score_gemma":0.0000050672147,"threshold_uncertainty_score":0.99992824},"labels":[],"label_agreement":null},{"id":"W4220811830","doi":"10.1128/aem.02209-21","title":"Transcriptomic Analysis of the Dual Response of Rhodococcus aetherivorans BCP1 to Inorganic Arsenic Oxyanions","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Arsenic contamination and mitigation","field":"Environmental Science","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Grantová Agentura České Republiky","keywords":"Arsenite; Arsenic; Arsenate; Rhodococcus; Strain (injury); Chemistry; Bioremediation; Microbiology; Biochemistry; Bacteria; Environmental chemistry; Biology; Enzyme; Genetics; Organic chemistry","score_opus":0.0038237975976437326,"score_gpt":0.17496040656215678,"score_spread":0.17113660896451305,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220811830","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99882054,0.000023390203,0.00013667211,0.00025488433,0.000047296122,0.00026293803,0.00024698273,0.000006235431,0.00020105795],"genre_scores_gemma":[0.99913615,0.000010569228,0.000078545505,0.00040710045,0.0000024544547,0.000029122557,0.000055710392,0.000007965014,0.00027239206],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991387,0.00016275144,0.00024204668,0.00024153189,0.00007489238,0.00014004578],"domain_scores_gemma":[0.9995829,0.000061929444,0.00010183874,0.00021377357,6.536915e-7,0.00003888846],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00025059556,0.00009947925,0.00019483878,0.00007027142,0.00015538586,0.0000016675979,0.00016256611,0.00004027382,0.003129376],"category_scores_gemma":[0.0000038430526,0.00008552296,0.00009073333,0.00035041058,0.00031471282,0.000017314684,0.0002995707,0.00009479985,0.000015933525],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000107716,0.000078139696,0.009972577,0.0000011049208,0.000072996314,2.0815729e-7,0.0021015354,0.0010994524,0.98553264,0.000089780224,0.00006501624,0.000878855],"study_design_scores_gemma":[0.000792747,0.00018990664,0.8108084,0.0000016208614,0.0003673057,0.0000179705,0.00364308,0.00014838889,0.17123523,0.000060184928,0.012519693,0.00021545986],"about_ca_topic_score_codex":0.000062708285,"about_ca_topic_score_gemma":0.00010451513,"teacher_disagreement_score":0.8142974,"about_ca_system_score_codex":0.00011934178,"about_ca_system_score_gemma":0.000007282922,"threshold_uncertainty_score":0.9977819},"labels":[],"label_agreement":null},{"id":"W4220856086","doi":"10.1128/aem.02185-21","title":"Genetic Characteristics of the Transmissible Locus of Stress Tolerance (tLST) and tLST Harboring Escherichia coli as Revealed by Large-Scale Genomic Analysis","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Beef Cattle Research Council; Alberta Innovates Bio Solutions; Alberta Agriculture and Forestry","keywords":"Biology; Escherichia coli; Virulence; Plasmid; Phylogenetic tree; Locus (genetics); Genome; Genetics; Gene; Microbiology","score_opus":0.002323024279235411,"score_gpt":0.18068641698297533,"score_spread":0.1783633927037399,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220856086","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99598396,0.0026571185,0.00007380629,0.000045120752,0.000023292676,0.00024297042,0.0009238334,0.0000022485017,0.00004765364],"genre_scores_gemma":[0.99770564,0.0015625901,0.00017733141,0.00008012664,0.000015217295,0.000052183543,0.00015399045,0.000014068554,0.00023886973],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99906075,0.00008052459,0.00024200007,0.00033060575,0.000057265068,0.00022885337],"domain_scores_gemma":[0.99957114,0.000015145832,0.00013587132,0.00022890286,0.0000043258374,0.00004459799],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010887501,0.00014524854,0.0002974085,0.000022580074,0.00017379339,0.0000043251052,0.00018328782,0.00006976401,0.00004603762],"category_scores_gemma":[0.0000029207476,0.000108187065,0.000068654095,0.00009917076,0.00034682444,0.0000014623594,0.00047058504,0.00012464866,4.0276123e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007541039,0.00010424322,0.11047568,0.000040765583,0.00022898964,4.4114614e-7,0.00015450062,0.00005637092,0.88852096,0.0000048427564,0.000040299707,0.00029748253],"study_design_scores_gemma":[0.0014505358,0.0003796437,0.52872777,0.000008538299,0.00033581292,0.000012634154,0.0011491928,0.000112881775,0.4518657,0.00001471604,0.015587077,0.00035550565],"about_ca_topic_score_codex":0.000028808588,"about_ca_topic_score_gemma":0.000011274314,"teacher_disagreement_score":0.43665525,"about_ca_system_score_codex":0.00001891609,"about_ca_system_score_gemma":0.000017696068,"threshold_uncertainty_score":0.44117406},"labels":[],"label_agreement":null},{"id":"W4220901795","doi":"10.1128/aem.02513-21","title":"Function and Application of the CRISPR-Cas System in the Plant Pathogen<i>Erwinia amylovora</i>","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Brock University; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Erwinia; CRISPR; Biology; Fire blight; Microbiology; Plasmid; Bacteriophage; Genetics; Bacteria; Gene; Escherichia coli","score_opus":0.0034108114650206905,"score_gpt":0.15967388101091526,"score_spread":0.15626306954589456,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220901795","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99844456,0.00007685143,0.00010377271,0.0001239151,0.00008825154,0.00036115907,0.0002433155,0.0000059744402,0.0005522089],"genre_scores_gemma":[0.99922043,0.000021985894,0.000022156795,0.0004971735,0.000011890254,0.000099322766,0.00009659948,0.0000065294375,0.00002390398],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999367,0.00007601836,0.00016333323,0.00022479665,0.000039008177,0.00012981684],"domain_scores_gemma":[0.99970007,0.000029064822,0.00008778331,0.00016718004,2.439334e-7,0.000015641042],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014769411,0.00009419233,0.00010083102,0.000014321351,0.00025422135,0.0000066438934,0.00014136675,0.0000386619,0.00013977688],"category_scores_gemma":[4.2435641e-7,0.000062803854,0.000024987028,0.00006446141,0.00023479095,0.000026151929,0.0003289898,0.00015599489,0.0000173409],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026587944,0.000061221224,0.007323664,0.0000052659902,0.0000048525603,5.280569e-7,0.00040404702,0.000057884565,0.98999035,0.00023433138,0.00017208302,0.0017192053],"study_design_scores_gemma":[0.00083902286,0.00017350574,0.8621209,0.000005805825,0.000061845036,0.0006978886,0.008501698,0.00013301893,0.014189836,0.00015146741,0.11286879,0.00025618193],"about_ca_topic_score_codex":0.00020690273,"about_ca_topic_score_gemma":0.00006469645,"teacher_disagreement_score":0.9758005,"about_ca_system_score_codex":0.00008860588,"about_ca_system_score_gemma":0.0000016051835,"threshold_uncertainty_score":0.25610667},"labels":[],"label_agreement":null},{"id":"W4220985895","doi":"10.1128/aem.02321-21","title":"The Critical Role of Environmental Synergies in the Creation of Bionanohybrid Microbes","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canada Excellence Research Chairs, Government of Canada; Canada Foundation for Innovation","keywords":"Cysteine; Nanoparticle; Chemistry; Bacteria; Sulfide; Biophysics; Escherichia coli; Metal; Nanotechnology; Intracellular; Chemical engineering; Biochemistry; Materials science; Biology; Enzyme; Organic chemistry","score_opus":0.002168864831793781,"score_gpt":0.16575413290585422,"score_spread":0.16358526807406043,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220985895","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99777853,0.0007545138,0.0000028600348,0.00020026848,0.000045628076,0.00022297654,0.00020837017,0.000002824099,0.0007840072],"genre_scores_gemma":[0.99911207,0.0004781904,0.000062386105,0.00014157666,0.000011665251,0.000032219108,0.00012438213,0.0000069998882,0.000030528045],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99910283,0.00011261343,0.0002752906,0.00022028486,0.00009366569,0.00019529164],"domain_scores_gemma":[0.99955344,0.00017108516,0.000098306795,0.00015881074,3.1296477e-7,0.000018035065],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030409513,0.00011368641,0.00013289819,0.000022575461,0.0002540503,0.000006050223,0.00024703663,0.00004223252,0.0007677884],"category_scores_gemma":[0.000003794909,0.00007535769,0.000040813593,0.00006077996,0.0010572209,0.00002931083,0.0003679281,0.00012483,0.000015573769],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038377435,0.00017112735,0.009956428,0.000003603451,0.000005206871,5.784872e-7,0.00063734816,0.00007265656,0.98471415,0.00037575126,0.00016449943,0.003860279],"study_design_scores_gemma":[0.0012112772,0.0005867784,0.20204344,0.0000065952972,0.00006415473,0.00017491069,0.022444025,0.00010742001,0.6310018,0.002617314,0.1392475,0.0004948174],"about_ca_topic_score_codex":0.000077392135,"about_ca_topic_score_gemma":0.00001891526,"teacher_disagreement_score":0.35371238,"about_ca_system_score_codex":0.0000705662,"about_ca_system_score_gemma":0.0000030364488,"threshold_uncertainty_score":0.84067446},"labels":[],"label_agreement":null},{"id":"W4224041052","doi":"10.1128/aem.00581-22","title":"Correction for Picott et al., “Heterologous Expression of Active <i>Dehalobacter</i> Respiratory Reductive Dehalogenases in Escherichia coli”","year":2022,"lang":"en","type":"erratum","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Heterologous; Escherichia coli; Biology; Heterologous expression; Microbiology; Genetics; Recombinant DNA; Gene","score_opus":0.0077191674917419205,"score_gpt":0.20883550436789317,"score_spread":0.20111633687615124,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4224041052","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9888518,0.00027128035,0.000009092649,0.00012381976,0.0046907472,0.0011187094,0.0029207508,0.000023099234,0.001990734],"genre_scores_gemma":[0.9780446,0.001395672,0.0002770233,0.0077134296,0.000099283636,0.0002199821,0.009112498,0.00008184623,0.0030556626],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980018,0.00018326848,0.00047948438,0.00084520975,0.00009910113,0.00039112577],"domain_scores_gemma":[0.99910325,0.00010724688,0.00046941117,0.0002415937,0.0000022651861,0.000076262804],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00020762646,0.0003978233,0.00053453125,0.000088736226,0.00012765799,0.000008714378,0.00024311354,0.00046445988,0.0012693127],"category_scores_gemma":[0.000016326036,0.00038429024,0.00010078338,0.000103082915,0.00054903433,0.00006788792,0.00048213292,0.00065928075,0.000021093687],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023976227,0.0002451204,0.000626926,0.0000101155065,0.000014693057,0.000001626334,0.00024331309,0.000017674376,0.69542915,0.0000010189365,0.30194572,0.0012248742],"study_design_scores_gemma":[0.0011379382,0.0005155473,0.023220498,0.000028557411,0.000036822876,0.000015898982,0.00069258263,0.000006408019,0.25135887,0.00002264151,0.7224508,0.000513441],"about_ca_topic_score_codex":0.00008659949,"about_ca_topic_score_gemma":0.00014841362,"teacher_disagreement_score":0.44407028,"about_ca_system_score_codex":0.00041672372,"about_ca_system_score_gemma":0.000027838087,"threshold_uncertainty_score":0.9998609},"labels":[],"label_agreement":null},{"id":"W4224065445","doi":"10.1128/aem.00018-22","title":"Soil Properties and Moisture Synergistically Influence Nontuberculous Mycobacterial Prevalence in Natural Environments of Hawai’i","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Science Foundation","keywords":"Nontuberculous mycobacteria; Moisture; Water content; Soil microbiology; Environmental science; Natural (archaeology); Biology; Ecology; Soil water; Soil science; Mycobacterium; Chemistry; Geology; Bacteria; Genetics; Geotechnical engineering","score_opus":0.005837267476012884,"score_gpt":0.18769892211306516,"score_spread":0.18186165463705228,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4224065445","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980173,0.0011966561,9.1503995e-7,0.00011517481,0.000043589724,0.00038391905,0.00013943358,0.0000060580523,0.00009694064],"genre_scores_gemma":[0.998127,0.0011103741,0.000060497212,0.00031873907,0.00002146805,0.000119546334,0.00013112972,0.000012289829,0.00009895329],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989917,0.00005612258,0.00023266306,0.00035173248,0.00008929975,0.00027846437],"domain_scores_gemma":[0.99965894,0.0000446723,0.00005394615,0.00015216219,0.0000013432435,0.00008893523],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001092642,0.00015416557,0.00028027297,0.000059972863,0.00008359378,0.000006136532,0.00008594499,0.000069414025,0.00016926667],"category_scores_gemma":[0.000014059691,0.00013119949,0.00002520653,0.000037210168,0.00050858484,0.000026985288,0.0004011838,0.00026584318,0.00000561017],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00053018273,0.00017844127,0.10033083,0.000112735106,0.000025417972,0.000019563267,0.00022942576,0.000014874729,0.89775145,0.00004192821,0.00002072008,0.0007444416],"study_design_scores_gemma":[0.0024334108,0.0007002461,0.93008727,0.0000386291,0.000054364635,0.00036402422,0.0004793184,0.000023931936,0.063461885,0.000034633103,0.0020834832,0.00023882955],"about_ca_topic_score_codex":0.00007614196,"about_ca_topic_score_gemma":0.000007346878,"teacher_disagreement_score":0.83428955,"about_ca_system_score_codex":0.000087117376,"about_ca_system_score_gemma":0.000018010775,"threshold_uncertainty_score":0.53501594},"labels":[],"label_agreement":null},{"id":"W4224936443","doi":"10.1128/aem.00316-22","title":"Responses of the Soil Bacterial Community, Resistome, and Mobilome to a Decade of Annual Exposure to Macrolide Antibiotics","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency; Agriculture and Agri-Food Canada; Western University","funders":"Agriculture and Agri-Food Canada; Government of Canada","keywords":"Resistome; Antibiotics; Macrolide Antibiotics; Biology; Microbiology; Soil microbiology; Bacteria; Antibiotic resistance; Erythromycin; Genetics","score_opus":0.010267671480883225,"score_gpt":0.22920994407246184,"score_spread":0.2189422725915786,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4224936443","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979144,0.000042909058,0.000004916129,0.00036826573,0.00007251897,0.000374807,0.00092260446,0.000006527498,0.00029309752],"genre_scores_gemma":[0.9982297,0.000037784157,0.0002444058,0.0012357079,0.000011234223,0.0000039163183,0.000024795416,0.000016022577,0.00019646407],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99877363,0.00023847177,0.00029564067,0.0002777747,0.00011534523,0.00029914678],"domain_scores_gemma":[0.9993443,0.00010859755,0.00009721241,0.00028975355,6.1747306e-7,0.00015954168],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030832939,0.00018108006,0.00026628416,0.000041056654,0.00031889224,0.000005314913,0.00034293122,0.00006330354,0.0004525251],"category_scores_gemma":[0.000012622687,0.00014655874,0.000041538497,0.00012659519,0.0008617572,0.000032501466,0.002929554,0.0002525613,0.000019380393],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031093074,0.0002550427,0.03059626,0.000012752821,0.000016208127,0.0000014287212,0.0010853077,0.0002873069,0.965995,0.000020941667,0.00031913628,0.0010996694],"study_design_scores_gemma":[0.00075295434,0.0007703302,0.42763296,0.0000098597075,0.000035414916,0.00009538785,0.0019276467,0.0000026276268,0.55906874,0.00009750681,0.009361928,0.00024461234],"about_ca_topic_score_codex":0.00012059289,"about_ca_topic_score_gemma":0.000024196432,"teacher_disagreement_score":0.40692624,"about_ca_system_score_codex":0.00008704687,"about_ca_system_score_gemma":0.000004823764,"threshold_uncertainty_score":0.59764916},"labels":[],"label_agreement":null},{"id":"W4224995766","doi":"10.1128/aem.00035-22","title":"Assessment of Listeria monocytogenes Surface Proteins Identified from Proteomics Analysis for Use as Diagnostic Biomarkers","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Canadian Food Inspection Agency","funders":"Canadian Food Inspection Agency","keywords":"Listeria monocytogenes; Biology; Polyclonal antibodies; Listeria; Pathogen; Microbiology; Bacteria; Proteomics; Monoclonal antibody; Recombinant DNA; Escherichia coli; Antibody; Biochemistry; Gene; Genetics","score_opus":0.027830901532159044,"score_gpt":0.26851650852169096,"score_spread":0.2406856069895319,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4224995766","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99047875,0.00028765964,0.0043932656,0.000022483502,0.0001247183,0.0011599008,0.003495656,0.0000075741145,0.000030016416],"genre_scores_gemma":[0.9795838,0.00014479134,0.012562546,0.00015028958,0.000033567914,0.00042639754,0.0069985194,0.000030391859,0.00006968046],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99863446,0.00010001643,0.0003467829,0.0006243031,0.00005447337,0.00023997568],"domain_scores_gemma":[0.9992208,0.00008283012,0.0002180067,0.00041696645,0.0000054781012,0.000055934885],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016646595,0.0002201806,0.0003338733,0.0000513027,0.00017911088,0.000018296243,0.00023110579,0.00012954761,0.00007555598],"category_scores_gemma":[0.000012066184,0.00023528699,0.0001456883,0.000078401274,0.0002283073,0.0000048113025,0.0008089906,0.00006324754,0.0000010782497],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002982781,0.00013212978,0.045710895,0.000011931826,0.0010492591,0.000001218925,0.00003721596,0.0008290215,0.9516985,0.000035191693,0.00003709552,0.00015925732],"study_design_scores_gemma":[0.0014241189,0.00055252906,0.05341507,0.00000214815,0.00045186531,0.000016276288,0.0003862721,0.00011176423,0.93769836,0.00008655606,0.0054774694,0.00037759278],"about_ca_topic_score_codex":0.00012910174,"about_ca_topic_score_gemma":0.00002328082,"teacher_disagreement_score":0.01400017,"about_ca_system_score_codex":0.00006475911,"about_ca_system_score_gemma":0.000032154625,"threshold_uncertainty_score":0.9594725},"labels":[],"label_agreement":null},{"id":"W4225082839","doi":"10.1128/aem.02449-21","title":"Functional Insights of Salinity Stress-Related Pathways in Metagenome-Resolved <i>Methanothrix</i> Genomes","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Anaerobic Digestion and Biogas Production","field":"Engineering","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Office of Science; Joint Genome Institute; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Government of Canada; Ministerie van Economische Zaken en Klimaat; U.S. Department of Energy","keywords":"Metagenomics; Halotolerance; Biology; Methanogen; Genome; Salinity; Computational biology; Genetics; Bacteria; Gene; Ecology","score_opus":0.007389966594227475,"score_gpt":0.15065327905795722,"score_spread":0.14326331246372975,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4225082839","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99660057,0.002144249,0.000060444483,0.000019297235,0.00019599561,0.00014318347,0.00015166837,0.000038986072,0.0006456107],"genre_scores_gemma":[0.99861354,0.00044362491,0.00007979756,0.00005517266,0.000015879641,0.000028643626,0.0006945855,0.000012918535,0.000055868477],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993717,0.000032047705,0.00022349389,0.00019880713,0.000036335405,0.00013758347],"domain_scores_gemma":[0.9998218,0.000016874004,0.000039914903,0.0000939355,9.69392e-7,0.000026529318],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008074151,0.000117147974,0.00017131127,0.00009091066,0.00006739654,0.0000023096165,0.00005904003,0.0000640217,0.00050577166],"category_scores_gemma":[6.041105e-7,0.00011880511,0.000030674968,0.00008122233,0.00012537085,0.000024464638,0.000089459616,0.0001677469,0.0000130166],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018515186,0.00008958744,0.0013636538,0.000005092536,0.000039466366,0.0000016035428,0.0003161665,0.008799188,0.98555404,0.0020893882,0.00008087722,0.0016424513],"study_design_scores_gemma":[0.0061328714,0.0005711332,0.10146397,0.000013512916,0.0001289106,0.00016815487,0.007911986,0.00035774536,0.6975637,0.0027544627,0.18146488,0.0014686442],"about_ca_topic_score_codex":0.0000064696046,"about_ca_topic_score_gemma":0.000004609797,"teacher_disagreement_score":0.28799027,"about_ca_system_score_codex":0.00006475369,"about_ca_system_score_gemma":0.0000047413696,"threshold_uncertainty_score":0.55378455},"labels":[],"label_agreement":null},{"id":"W4225091404","doi":"10.1128/aem.00273-22","title":"Brassica napus Bacterial Assembly Processes Vary with Plant Compartment and Growth Stage but Not between Lines","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Canada First Research Excellence Fund","keywords":"Brassica; Rhizosphere; Biology; Microbiome; Biotechnology; Agronomy; Crop; Botany; Bacteria; Bioinformatics; Genetics","score_opus":0.011533705959672033,"score_gpt":0.17439710517971554,"score_spread":0.1628633992200435,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4225091404","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953507,0.00006906786,0.000001340914,0.00022908108,0.00005131204,0.00018712132,0.003997722,0.000021181999,0.00009242983],"genre_scores_gemma":[0.9957729,0.00012586472,0.000039024337,0.00026091794,0.0000781621,0.000041039824,0.0035630758,0.0000017489567,0.000117273354],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99926084,0.000049800776,0.00014828068,0.00028685274,0.000039010316,0.00021520449],"domain_scores_gemma":[0.99968696,0.00013581895,0.00008199312,0.00003704228,0.0000023515465,0.00005586203],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006325277,0.00016046128,0.00020518612,0.000011488488,0.00047635453,0.000031583786,0.000114945,0.00004833573,0.00030192515],"category_scores_gemma":[0.0000012384967,0.00007190677,0.000016467418,0.000044451353,0.00015015631,0.00004877434,0.00026558337,0.00016357368,0.000007099784],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016440052,0.00011884228,0.010299853,0.0000084100075,0.00003458056,0.0000041951766,0.000051718005,9.1619415e-7,0.98783726,0.000019837327,0.0001915078,0.001268456],"study_design_scores_gemma":[0.0013057938,0.001900072,0.33340997,0.000015054536,0.00007812217,0.00065199984,0.0025459288,0.000004569181,0.46203452,0.000037093843,0.19727243,0.00074441644],"about_ca_topic_score_codex":0.00017583974,"about_ca_topic_score_gemma":0.000075409094,"teacher_disagreement_score":0.52580273,"about_ca_system_score_codex":0.00002853435,"about_ca_system_score_gemma":0.0000054253896,"threshold_uncertainty_score":0.36637822},"labels":[],"label_agreement":null},{"id":"W4225528734","doi":"10.1128/aem.02296-21","title":"Differential Regulation and Production of Secondary Metabolites among Isolates of the Fungal Wheat Pathogen Zymoseptoria tritici","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institute for Advanced Research","keywords":"Biology; Secondary metabolite; Virulence; Transcriptome; Mycosphaerella graminicola; Genome; Secondary metabolism; Gene; Metabolome; Genetics; Gene cluster; Host adaptation; Microbiology; Gene expression; Metabolite; Biochemistry; Biosynthesis","score_opus":0.004542475006736873,"score_gpt":0.15318424376314907,"score_spread":0.1486417687564122,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4225528734","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99883825,0.00022761077,3.7199132e-7,0.00008710689,0.00016432245,0.00014548918,0.00048919744,0.000003934956,0.00004371136],"genre_scores_gemma":[0.99942493,0.000088743924,0.000011485879,0.00001989146,0.000034122913,0.0000111645995,0.00031884862,7.348222e-7,0.00009006619],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995262,0.000071078284,0.00014950287,0.00014352032,0.000022656053,0.00008704068],"domain_scores_gemma":[0.9998153,0.00003650262,0.0000924841,0.00004018748,0.00000223339,0.000013296622],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000057455898,0.000073027055,0.00012714132,0.000008238065,0.00022374254,0.0000044457856,0.00006821437,0.00003813621,0.0004613785],"category_scores_gemma":[0.000001605179,0.00003142816,0.00003326852,0.00003954424,0.00020028622,0.000033081866,0.00017785629,0.00010781009,4.0366766e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038804174,0.00007033697,0.010336848,0.0000046023288,0.000014917745,3.230899e-8,0.00008293122,0.0000013905969,0.98277324,0.00003850526,0.000076995384,0.006561378],"study_design_scores_gemma":[0.00013666385,0.00009210813,0.4936252,0.0000029594848,0.00002214605,0.000041085543,0.0006596226,0.0000047567128,0.49999225,0.00013937583,0.005216821,0.000067008885],"about_ca_topic_score_codex":0.00007335805,"about_ca_topic_score_gemma":0.000014052848,"teacher_disagreement_score":0.48328835,"about_ca_system_score_codex":0.0000108807735,"about_ca_system_score_gemma":0.0000014840895,"threshold_uncertainty_score":0.50517714},"labels":[],"label_agreement":null},{"id":"W4226399394","doi":"10.1128/aem.00295-22","title":"The Use of Disinfectant in Barn Cleaning Alters Microbial Composition and Increases Carriage of <i>Campylobacter jejuni</i> in Broiler Chickens","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Animal Nutrition and Physiology","field":"Agricultural and Biological Sciences","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Barn; Broiler; Campylobacter jejuni; Disinfectant; Campylobacter; Biology; Carriage; Microbiology; Veterinary medicine; Food science; Bacteria; Medicine","score_opus":0.008651998915213522,"score_gpt":0.15764364184645058,"score_spread":0.14899164293123707,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4226399394","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992787,0.000118929216,1.7801813e-7,0.00011762268,0.000017018916,0.0001387587,0.00030847115,0.0000026245132,0.00001766897],"genre_scores_gemma":[0.9990949,0.0002618782,0.000014882868,0.00030831405,0.000009533576,0.00000992103,0.00029686125,9.171672e-7,0.0000027611354],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99937403,0.000113391055,0.00019000683,0.00016460186,0.000020096266,0.00013787753],"domain_scores_gemma":[0.9996996,0.00017784664,0.00007375145,0.0000275526,0.0000010217702,0.000020221294],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007470869,0.0000811115,0.00016100249,0.000012835685,0.000110062494,0.0000046997025,0.000059110003,0.000042050327,0.000068774025],"category_scores_gemma":[0.0000013362878,0.00003877075,0.000023842718,0.000053814034,0.0002917176,0.000022370807,0.00016495549,0.000104145285,4.822336e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019357301,0.00014317188,0.02699447,0.0000030992105,0.0000047336625,8.8931904e-7,0.00007972484,0.000011244016,0.9711704,0.00017241036,0.000039629493,0.0011866171],"study_design_scores_gemma":[0.0010444139,0.0006138713,0.9671077,0.000015340207,0.000010691934,0.0000646445,0.0013970014,0.000019132842,0.018095369,0.0002170255,0.011200673,0.00021415313],"about_ca_topic_score_codex":0.00035106757,"about_ca_topic_score_gemma":0.00022748706,"teacher_disagreement_score":0.95307505,"about_ca_system_score_codex":0.000017949691,"about_ca_system_score_gemma":0.0000012535965,"threshold_uncertainty_score":0.15810254},"labels":[],"label_agreement":null},{"id":"W4231373052","doi":"10.1128/aem.00819-07","title":"Potential for Mercury Reduction by Microbes in the High Arctic","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mercury impact and mitigation studies","field":"Environmental Science","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Mercury (programming language); Arctic; The arctic; Environmental chemistry; Biology; Environmental science; Chemistry; Ecology; Oceanography; Computer science; Geology","score_opus":0.004495389099392798,"score_gpt":0.20074927409522048,"score_spread":0.1962538849958277,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4231373052","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99806285,0.00018288774,0.00047209553,0.0003907713,0.00009734728,0.00036016532,0.000060707745,0.000007101579,0.00036607537],"genre_scores_gemma":[0.99843967,0.00013187971,0.00033752082,0.000634542,0.000041579955,0.000033357228,0.00023415948,0.000008132445,0.00013914685],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99924153,0.000021445077,0.00017447451,0.00024393237,0.00003767104,0.00028095572],"domain_scores_gemma":[0.9997748,0.000048371472,0.000049219943,0.00009480616,4.391972e-7,0.000032378965],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002971599,0.00012443106,0.00011764221,0.000020221287,0.00015545335,0.0000087572325,0.00009352511,0.000077253404,0.00025431963],"category_scores_gemma":[0.0000023577657,0.000091981354,0.0000268207,0.00004549388,0.00041623987,0.00004167419,0.000067530964,0.00008575288,0.000058349375],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033938715,0.00006463631,0.0024523423,0.0000033746883,0.000008107254,6.2802957e-7,0.00048306142,0.000009230508,0.9898819,0.00010875174,0.003482438,0.0034715885],"study_design_scores_gemma":[0.005441167,0.00062491745,0.3251128,0.000016574777,0.00017072253,0.0008217774,0.019253137,0.000016104092,0.40413994,0.006053689,0.2369866,0.0013625944],"about_ca_topic_score_codex":0.00012032089,"about_ca_topic_score_gemma":0.00002243031,"teacher_disagreement_score":0.58574194,"about_ca_system_score_codex":0.000066059714,"about_ca_system_score_gemma":0.0000010108495,"threshold_uncertainty_score":0.37508908},"labels":[],"label_agreement":null},{"id":"W4231908702","doi":"10.1128/aem.02553-07","title":"Evolution of the Core Genome of <i>Pseudomonas syringae</i> , a Highly Clonal, Endemic Plant Pathogen","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Pseudomonas syringae; Biology; Genome; Pathogen; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Genetics; Microbiology; Computational biology; Bacteria; Gene","score_opus":0.011242565915956862,"score_gpt":0.14764746217345315,"score_spread":0.1364048962574963,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4231908702","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964636,0.0007628303,6.53744e-7,0.000038182854,0.000047086312,0.00016201794,0.0024049077,0.000007770835,0.000112923866],"genre_scores_gemma":[0.9988964,0.0006303026,0.000042233693,0.000059557868,0.000035268076,0.0000095931,0.00030125436,9.2655955e-7,0.00002443966],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993462,0.000026943042,0.00020930468,0.00020554845,0.00004071145,0.00017129396],"domain_scores_gemma":[0.99971575,0.00006321675,0.0001390203,0.000054707554,0.0000020960683,0.000025209787],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000062089355,0.000119248885,0.0002153045,0.0000060213015,0.00013418279,9.593855e-7,0.00015696122,0.00009551758,0.00002855789],"category_scores_gemma":[0.0000020053794,0.00004520011,0.00005694117,0.00004793391,0.00046899793,0.000013390292,0.00020634082,0.00007152296,0.000005737361],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031949665,0.00004899266,0.030160306,0.000004417692,0.000018871127,0.0000013422627,0.0000777945,0.0000015881653,0.9693065,0.00013846454,0.00005083042,0.00015893357],"study_design_scores_gemma":[0.00031801919,0.0001473854,0.86647224,0.000009408581,0.000029721608,0.00049577403,0.0002972905,0.0000015761716,0.12423829,0.00012383531,0.007688387,0.00017807687],"about_ca_topic_score_codex":0.000032710424,"about_ca_topic_score_gemma":0.000020141753,"teacher_disagreement_score":0.8450682,"about_ca_system_score_codex":0.000027455771,"about_ca_system_score_gemma":0.0000039734364,"threshold_uncertainty_score":0.1843207},"labels":[],"label_agreement":null},{"id":"W4235495910","doi":"10.1128/aem.00857-08","title":"Role of Migratory Birds in Introduction and Range Expansion of <i>Ixodes scapularis</i> Ticks and of <i>Borrelia burgdorferi</i> and <i>Anaplasma phagocytophilum</i> in Canada","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Viral Infections and Vectors","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph; Public Health Agency of Canada; Birds Canada; Queen's University; International Development Research Centre","funders":"","keywords":"Anaplasma phagocytophilum; Ixodes scapularis; Borrelia burgdorferi; Borrelia; Biology; Ixodes; Anaplasma; Tick; Ixodidae; Range (aeronautics); Microbiology; Zoology; Ecology","score_opus":0.0031085788215140095,"score_gpt":0.15870717324461595,"score_spread":0.15559859442310195,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4235495910","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974478,0.0022264135,0.0000016146539,0.000043294298,0.000025646457,0.00017732159,0.00004739206,0.0000019783356,0.000028523935],"genre_scores_gemma":[0.997263,0.0025385106,0.000068177564,0.00006387303,0.00001630901,0.0000061736105,0.000030331845,0.00000792319,0.0000056614085],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99937475,0.000020731452,0.0002596096,0.00020348633,0.00002724207,0.00011419849],"domain_scores_gemma":[0.9997784,0.00002142139,0.0000747837,0.00008228908,0.0000027540784,0.000040351457],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000063429674,0.00011017664,0.0003439632,0.00008687447,0.000023652097,6.5969664e-7,0.000015901294,0.00008582319,0.000007452714],"category_scores_gemma":[0.0000024244478,0.00009981768,0.000012240294,0.000061870676,0.00037429514,0.000025114283,0.00004459745,0.00009825238,1.02823755e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010244599,0.00004726411,0.3252062,0.000041905543,0.000009325827,0.0000016750681,0.00018289557,0.0000036689785,0.67344,0.000009110251,0.000037883503,0.0009176448],"study_design_scores_gemma":[0.002768786,0.00036746223,0.50874054,0.000038602735,0.000040844887,0.00034050347,0.0015129908,0.000040105744,0.48523286,0.000028185857,0.00074419,0.00014491753],"about_ca_topic_score_codex":0.07550923,"about_ca_topic_score_gemma":0.03603793,"teacher_disagreement_score":0.1882071,"about_ca_system_score_codex":0.00004555691,"about_ca_system_score_gemma":0.000034369517,"threshold_uncertainty_score":0.9815519},"labels":[],"label_agreement":null},{"id":"W4239131029","doi":"10.1128/aem.05896-11","title":"Generation of Multimillion-Sequence 16S rRNA Gene Libraries from Complex Microbial Communities by Assembling Paired-End Illumina Reads","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":50,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Wilfrid Laurier University; University of Waterloo","funders":"","keywords":"Biology; Genetics; 16S ribosomal RNA; Illumina dye sequencing; Computational biology; Gene; Ribosomal RNA; DNA sequencing","score_opus":0.07193464806363736,"score_gpt":0.2100395760047354,"score_spread":0.13810492794109805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4239131029","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99729866,0.0001660958,0.00020869682,0.00003697858,0.000103827886,0.00023121362,0.0008335436,0.000029121726,0.0010918559],"genre_scores_gemma":[0.98828995,0.00037877628,0.004764928,0.000695344,0.00003513819,0.000018043751,0.0057450132,0.000023462768,0.0000493299],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99859965,0.00025643123,0.0003980882,0.00034903004,0.000040046933,0.0003567261],"domain_scores_gemma":[0.99919087,0.00013034788,0.00020717045,0.00039464282,0.0000020131408,0.000074970805],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00014920233,0.00029008902,0.00039669694,0.000039952807,0.0004065872,0.000011222048,0.00042514413,0.00030643854,0.0071444325],"category_scores_gemma":[0.0000027068477,0.00029154393,0.00005792418,0.000055017757,0.0024491134,0.00013872875,0.00070033106,0.00029002078,0.000120193516],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008049242,0.0002093206,0.0077876034,0.000004868997,0.000045503984,0.0000014606444,0.0027381482,0.000020099706,0.9847446,0.00007814178,0.003024579,0.0012651979],"study_design_scores_gemma":[0.0010906617,0.0003139085,0.031556368,0.000008750788,0.00006276632,0.00005136979,0.0018885552,0.00019653158,0.95390916,0.00075104146,0.009557591,0.0006132885],"about_ca_topic_score_codex":0.003035001,"about_ca_topic_score_gemma":0.00062367436,"teacher_disagreement_score":0.030835416,"about_ca_system_score_codex":0.00006409167,"about_ca_system_score_gemma":0.0000072081843,"threshold_uncertainty_score":0.9999537},"labels":[],"label_agreement":null},{"id":"W4248646024","doi":"10.1128/aem.67.11.5349-5349.2001","title":"Development and Characterization of a Xylose-Dependent System for Expression of Cloned Genes in <i>Bacillus subtilis</i> : Conditional Complementation of a Teichoic Acid Mutant","year":2001,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Complementation; Bacillus subtilis; Xylose; Mutant; Gene; Biology; Teichoic acid; Protein-fragment complementation assay; Genetics; Biochemistry; Microbiology; Bacteria; Fermentation","score_opus":0.006863756727657098,"score_gpt":0.1933662609681109,"score_spread":0.1865025042404538,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4248646024","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972157,0.000091873655,0.0021267526,0.000009186759,0.000023541616,0.00028627744,0.0002373772,0.0000020634936,0.0000072170433],"genre_scores_gemma":[0.99509215,0.00018095822,0.00053789996,0.000017732318,0.000014497594,0.00004304532,0.0040989085,0.0000068608306,0.000007939934],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993919,0.000021445347,0.000297412,0.00018510134,0.00002826318,0.00007586001],"domain_scores_gemma":[0.99972385,0.0000048185757,0.00018716713,0.000060644437,0.0000075918592,0.000015949152],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008724544,0.000081302314,0.00014341903,0.0000400514,0.000025539799,0.0000011620548,0.000029810575,0.000071564165,0.0000073007755],"category_scores_gemma":[0.0000013437492,0.00007972227,0.000014383298,0.000021223479,0.00010012599,0.000004266989,0.000041075582,0.000017250237,1.915687e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020464048,0.000079986436,0.00461639,0.000091288915,0.000013896118,1.171384e-7,0.00015934536,0.0000037440818,0.9932787,0.00006471589,6.2582563e-7,0.0014865625],"study_design_scores_gemma":[0.0009917716,0.00006946027,0.017215976,0.000014639384,0.000008054862,0.000018106151,0.0004995795,0.000005803665,0.980318,0.0000042968763,0.00078502705,0.0000692581],"about_ca_topic_score_codex":0.0000013300878,"about_ca_topic_score_gemma":0.0000031236812,"teacher_disagreement_score":0.012960661,"about_ca_system_score_codex":0.000013156923,"about_ca_system_score_gemma":0.000008568431,"threshold_uncertainty_score":0.32509795},"labels":[],"label_agreement":null},{"id":"W4249172299","doi":"10.1128/aem.02830-15","title":"Articles of Significant Interest Selected from This Issue by the Editors","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Diverse Scientific and Economic Studies","field":"Economics, Econometrics and Finance","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Computational biology; Data science; Computer science; Biology","score_opus":0.02229251309113701,"score_gpt":0.16245233389486896,"score_spread":0.14015982080373196,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4249172299","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9838716,0.0010660122,0.000026861617,0.00032107075,0.0010689456,0.00011470454,0.001554983,0.000009587948,0.011966242],"genre_scores_gemma":[0.9955689,0.000089140565,0.000053347325,0.00014977905,0.000177309,0.000007779683,0.000102045015,0.000006411831,0.0038453029],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9993285,0.0000075035273,0.00024455573,0.00026190886,0.000006939578,0.00015061174],"domain_scores_gemma":[0.99965954,0.000037453497,0.00012511478,0.00013286501,0.0000017806544,0.00004323726],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00014472044,0.00009176051,0.0002124355,0.000025406827,0.000053365293,0.000012336868,0.0001289016,0.000057647223,0.0019137901],"category_scores_gemma":[0.0000076159386,0.00007537536,0.000023077257,0.00003793659,0.00040976942,0.000029306588,0.0001234817,0.000058038804,0.0022595169],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026102305,0.00008836178,0.008725819,0.000002399051,0.00010755196,3.0771585e-7,0.0016654361,0.0000031525778,0.14760481,0.0014839933,0.83974695,0.0005450857],"study_design_scores_gemma":[0.0007445471,0.00006416505,0.0018415686,0.0000021417932,0.000013067063,0.0000020586522,0.0042809094,0.000035862537,0.02438213,0.0018648342,0.9665675,0.0002012166],"about_ca_topic_score_codex":0.00023892052,"about_ca_topic_score_gemma":0.0000030338051,"teacher_disagreement_score":0.12682052,"about_ca_system_score_codex":0.000033532073,"about_ca_system_score_gemma":0.0000028305283,"threshold_uncertainty_score":0.9989986},"labels":[],"label_agreement":null},{"id":"W4250392263","doi":"10.1128/aem.00951-10","title":"Type II Diacylglycerol Acyltransferase from <i>Claviceps purpurea</i> with Ricinoleic Acid, a Hydroxyl Fatty Acid of Industrial Importance, as Preferred Substrate","year":2010,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Botanical Research and Chemistry","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Plant Biotechnology Institute; University of Saskatchewan; Saskatchewan Research Council (Canada)","funders":"","keywords":"Claviceps purpurea; Ricinoleic acid; Substrate (aquarium); Biochemistry; Diacylglycerol kinase; Acyltransferase; Fatty acid; Chemistry; Substrate specificity; Biology; Enzyme; Castor oil","score_opus":0.008895884558273642,"score_gpt":0.18248415670680898,"score_spread":0.17358827214853534,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4250392263","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99817747,0.00015186853,4.987799e-7,0.00014020927,0.00004100362,0.00024783358,0.00045768457,0.00002107663,0.0007623436],"genre_scores_gemma":[0.99848837,0.0001531293,0.00004193106,0.00018565201,0.00013435449,0.000022161015,0.0009437158,0.0000030629556,0.000027623433],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99880815,0.000022856286,0.00024153713,0.0004547013,0.00009010631,0.0003826308],"domain_scores_gemma":[0.9995423,0.000057014426,0.000084666426,0.000114960516,0.0000055618807,0.00019548222],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007232222,0.00022639478,0.00029389578,0.000005851524,0.00014810082,0.00001627314,0.00024924398,0.0003507772,0.0012797851],"category_scores_gemma":[0.000006614439,0.000098202436,0.000050373634,0.00009704914,0.00047158395,0.000045720004,0.000121206016,0.00047646908,0.00002817473],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005379131,0.0001787667,0.019684017,0.0000025031275,0.000040282714,0.000005618311,0.000029107634,1.3127716e-7,0.9721007,0.000017090915,0.000047996127,0.007355886],"study_design_scores_gemma":[0.0009589884,0.00055318105,0.024074977,0.000006505316,0.000028353978,0.000026098029,0.00018344849,6.719765e-7,0.97154254,0.00018675247,0.0022172432,0.00022123626],"about_ca_topic_score_codex":0.00017274257,"about_ca_topic_score_gemma":0.00031293236,"teacher_disagreement_score":0.0071346494,"about_ca_system_score_codex":0.000013543925,"about_ca_system_score_gemma":0.00001204517,"threshold_uncertainty_score":0.9996332},"labels":[],"label_agreement":null},{"id":"W4250767639","doi":"10.1128/aem.02754-07","title":"Design and Performance of a 16S rRNA-Targeted Oligonucleotide Probe for Detection of Members of the Genus <i>Bdellovibrio</i> by Fluorescence In Situ Hybridization","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Oligonucleotide; Biology; Bdellovibrio; In situ; 16S ribosomal RNA; Fluorescence in situ hybridization; In situ hybridization; Ribosomal RNA; Molecular probe; Oligomer restriction; Nucleic acid thermodynamics; Molecular biology; Bacteria; Microbiology; Genetics; DNA; Base sequence; Chemistry; Gene; Messenger RNA","score_opus":0.004967110732025651,"score_gpt":0.17489103749643953,"score_spread":0.16992392676441387,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4250767639","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99839103,0.00040636578,0.0007129911,0.00000860375,0.000012653153,0.00041568078,0.000043618387,0.0000010779281,0.000007952489],"genre_scores_gemma":[0.99734366,0.0017375125,0.0008060439,0.000012872214,0.0000054275242,0.000025501658,0.00005168989,0.0000073286114,0.000009982361],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99948514,0.000030749612,0.00017050943,0.0001697525,0.000024298804,0.00011955126],"domain_scores_gemma":[0.9997724,0.000014642043,0.000099872355,0.0000930169,0.000005360683,0.000014695899],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007789978,0.00008331385,0.00014158715,0.00001898777,0.000043704473,8.0530396e-7,0.00006304377,0.000063715976,9.2330947e-7],"category_scores_gemma":[0.0000069143407,0.0000677161,0.000020194659,0.000031272237,0.00045473294,0.0000031334077,0.0001029439,0.00003359797,9.2832735e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002570411,0.000038661543,0.0042328187,0.00004495695,0.000022192646,8.1669995e-8,0.000082492625,0.000046922807,0.9945012,7.423151e-7,0.000028229155,0.00074467284],"study_design_scores_gemma":[0.0005667603,0.00030180305,0.015751328,0.000006661416,0.000007363706,0.00001225491,0.000042657382,0.00006132364,0.9829712,0.0000018923573,0.00021616885,0.00006059337],"about_ca_topic_score_codex":0.000011477486,"about_ca_topic_score_gemma":0.0000040678733,"teacher_disagreement_score":0.011529996,"about_ca_system_score_codex":0.000009338077,"about_ca_system_score_gemma":0.000009550239,"threshold_uncertainty_score":0.27613825},"labels":[],"label_agreement":null},{"id":"W4252162991","doi":"10.1128/aem.05558-11","title":"Coupled Arsenotrophy in a Hot Spring Photosynthetic Biofilm at Mono Lake, California","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Arsenic contamination and mitigation","field":"Environmental Science","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Hot spring; Spring (device); Photosynthesis; Biofilm; Environmental science; Ecology; Biology; Botany; Bacteria; Engineering; Paleontology","score_opus":0.006851194238990652,"score_gpt":0.15830097926190886,"score_spread":0.15144978502291823,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4252162991","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99508876,0.000029352148,0.00006979173,0.000017415066,0.00003621795,0.00023502792,0.00003768908,0.000019531366,0.004466233],"genre_scores_gemma":[0.99880266,0.00007549453,0.00045791204,0.00027812386,0.0000068758013,0.000034646604,0.000063275285,0.000013502633,0.00026748457],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99913454,0.000022553379,0.00019498638,0.00035207855,0.00003746475,0.00025836856],"domain_scores_gemma":[0.99971366,0.000017352051,0.000063924024,0.0001369915,2.9796482e-7,0.00006778171],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000081668986,0.00015221759,0.00014856603,0.00003424229,0.000087941204,0.0000037396742,0.00008888899,0.00010207277,0.0044723903],"category_scores_gemma":[0.000001756697,0.00014650931,0.000027656553,0.000046183188,0.00034109034,0.000034723074,0.00023282785,0.000091052236,0.0010536107],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005072257,0.000078028745,0.036434084,0.0000021264514,0.000005035269,0.0000057368184,0.0005074508,0.000007853037,0.9603458,0.000055097076,0.00002586744,0.0024821763],"study_design_scores_gemma":[0.0025964356,0.0001584429,0.7273626,0.00001320438,0.00003768701,0.00012365292,0.000710678,0.0009501728,0.22374742,0.00029974803,0.0431931,0.00080687273],"about_ca_topic_score_codex":0.00019093465,"about_ca_topic_score_gemma":0.00092976115,"teacher_disagreement_score":0.7365984,"about_ca_system_score_codex":0.00015134863,"about_ca_system_score_gemma":0.000002267294,"threshold_uncertainty_score":0.9997242},"labels":[],"label_agreement":null},{"id":"W4252836142","doi":"10.1128/aem.02295-07","title":"Use of Selective Capture of Transcribed Sequences To Identify Genes Preferentially Expressed by <i>Streptococcus suis</i> upon Interaction with Porcine Brain Microvascular Endothelial Cells","year":2007,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Biology; Gene; Streptococcus suis; Genetics; Streptococcus; Computational biology; Microbiology; Cell biology; Bacteria; Virulence","score_opus":0.01055019553387221,"score_gpt":0.23686740779061474,"score_spread":0.22631721225674253,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4252836142","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99743265,0.00011499242,0.00098995,0.000036286903,0.000046944588,0.0009166117,0.00038416137,0.0000130825865,0.00006534951],"genre_scores_gemma":[0.99869436,0.00008130765,0.00049277546,0.000105858075,0.000020112384,0.00004229424,0.0004507763,0.000018625295,0.00009389016],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990588,0.000026868549,0.00029726967,0.0003483604,0.000054651944,0.00021406027],"domain_scores_gemma":[0.9995561,0.000069427886,0.00012615383,0.00015265426,0.000011931202,0.00008367983],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000063675834,0.00020473404,0.00036232593,0.000089982634,0.000041092382,0.0000058305086,0.000041241256,0.00013276986,0.000082429135],"category_scores_gemma":[0.0000019149618,0.00015723874,0.00007417009,0.0000776416,0.00016641596,0.00004657179,0.00002523129,0.00010694054,0.0000041698363],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000731638,0.00041840455,0.020314617,0.000034224868,0.00034533982,0.000004560339,0.00030449557,0.000023379662,0.9761215,0.000005264599,0.00015151034,0.001545068],"study_design_scores_gemma":[0.0019397989,0.00065631047,0.015434649,0.000034480192,0.00018454375,0.000039678303,0.00035328604,6.9860886e-7,0.9784141,0.0000045831853,0.0028102624,0.00012761241],"about_ca_topic_score_codex":0.0003472426,"about_ca_topic_score_gemma":0.00007599377,"teacher_disagreement_score":0.004879968,"about_ca_system_score_codex":0.00005480247,"about_ca_system_score_gemma":0.000012424156,"threshold_uncertainty_score":0.641201},"labels":[],"label_agreement":null},{"id":"W4281293833","doi":"10.1128/aem.02109-21","title":"Community Structure and Microbial Associations in Sediment-Free Methanotrophic Enrichment Cultures from a Marine Methane Seep","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Biological and Environmental Research; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Joint Genome Institute; Canadian Institute for Advanced Research; Office of Science; California Institute of Technology; Center for Dark Energy Biosphere Investigations; U.S. Department of Energy; National Science Foundation","keywords":"Archaea; Cold seep; Microorganism; Anaerobic oxidation of methane; Biology; Deltaproteobacteria; Petroleum seep; Microbial population biology; Sulfate-reducing bacteria; Sediment; Methane; Metagenomics; Anoxic waters; Environmental chemistry; Ecology; Bacteria; Chemistry; Gammaproteobacteria; 16S ribosomal RNA","score_opus":0.004901139436325017,"score_gpt":0.1854080537322887,"score_spread":0.18050691429596366,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4281293833","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971139,0.00032496106,0.0000043396312,0.00028649357,0.000103110055,0.00034379182,0.0010399345,0.000016702648,0.00076678226],"genre_scores_gemma":[0.9960852,0.00013828215,0.0009045912,0.00081333535,0.000022495678,0.000046645033,0.0017512904,0.000018760813,0.00021938485],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99847776,0.0003855336,0.0002804532,0.00042082075,0.00009047323,0.00034495248],"domain_scores_gemma":[0.99938977,0.00009199918,0.00012734298,0.00030247655,5.1304846e-7,0.000087918765],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00026906762,0.00024642082,0.00031258943,0.000047813694,0.00041886405,0.00001355668,0.00030006826,0.00014188555,0.0041580065],"category_scores_gemma":[0.0000047820417,0.00022494614,0.000035218676,0.00011632834,0.00030816783,0.0000420498,0.0025603534,0.00075213774,0.00001794503],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000045144774,0.0002098318,0.01924502,0.0000028574607,0.00006377284,0.0000044408625,0.0016772709,0.0005971447,0.97669053,0.00005524483,0.00036758627,0.0010411717],"study_design_scores_gemma":[0.017234856,0.0013296236,0.72756267,0.000013818051,0.00050084776,0.0003514685,0.010164609,0.00030632666,0.1254715,0.045499917,0.068717845,0.0028465309],"about_ca_topic_score_codex":0.0028423544,"about_ca_topic_score_gemma":0.00029386554,"teacher_disagreement_score":0.851219,"about_ca_system_score_codex":0.00030960134,"about_ca_system_score_gemma":0.000004223455,"threshold_uncertainty_score":0.9967523},"labels":[],"label_agreement":null},{"id":"W4281670049","doi":"10.1128/aem.02474-21","title":"Profiling Destruxin Synthesis by Specialist and Generalist Metarhizium Insect Pathogens during Coculture with Plants","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Entomopathogenic Microorganisms in Pest Control","field":"Agricultural and Biological Sciences","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Brock University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Metarhizium; Biology; Phaseolus; Insect; Botany; Generalist and specialist species; Biopesticide; Biological pest control; Metarhizium anisopliae; Ecology; Pesticide","score_opus":0.004315224412620728,"score_gpt":0.13794943536472684,"score_spread":0.13363421095210612,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4281670049","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99607956,0.0009804915,0.000001628328,0.00012615602,0.00003849421,0.00028480028,0.0023722374,0.000029848597,0.00008674991],"genre_scores_gemma":[0.9981636,0.00022731983,0.00021777918,0.00029785532,0.00008136632,0.000100619814,0.0008132331,0.0000041411736,0.000094084324],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99884343,0.000089632136,0.0001765044,0.00050425995,0.00006425766,0.00032191467],"domain_scores_gemma":[0.9997019,0.0000624267,0.00009209959,0.000061039864,0.000001446219,0.00008106053],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000114148555,0.00022280896,0.00025926565,0.000010788344,0.0005885291,0.000028961607,0.000151858,0.0000823651,0.00045156825],"category_scores_gemma":[0.0000022314396,0.000105504914,0.000029929732,0.000052143052,0.00025486058,0.00002936722,0.00026139803,0.00018122958,0.000005004041],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000082210485,0.000059024278,0.007920986,0.000004546624,0.00003272782,0.000015648207,0.00006848992,0.0000031513584,0.9897963,0.00004911041,0.000079870944,0.0018879586],"study_design_scores_gemma":[0.0009555159,0.0003218354,0.03777948,0.0000064357837,0.00009906754,0.0016261663,0.0019984834,0.000004471691,0.9351267,0.000052011823,0.021281496,0.00074830774],"about_ca_topic_score_codex":0.00003887532,"about_ca_topic_score_gemma":0.000049437484,"teacher_disagreement_score":0.054669548,"about_ca_system_score_codex":0.00006008172,"about_ca_system_score_gemma":0.0000030011697,"threshold_uncertainty_score":0.49443558},"labels":[],"label_agreement":null},{"id":"W4281704897","doi":"10.1128/aem.00580-22","title":"Inhibition of Sulfate Reduction and Cell Division by Desulfovibrio desulfuricans Coated in Palladium Metal","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Metal Extraction and Bioleaching","field":"Engineering","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo; University of Calgary","funders":"Canada Excellence Research Chairs, Government of Canada; Canada Foundation for Innovation","keywords":"Formate; Sulfate; Sulfate-reducing bacteria; Chemistry; Inorganic chemistry; Electron donor; Metal; Population; Sulfide; Bioremediation; Bacteria; Catalysis; Palladium; Nuclear chemistry; Biochemistry; Biology; Organic chemistry","score_opus":0.003858650456937293,"score_gpt":0.15515391719049013,"score_spread":0.15129526673355284,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4281704897","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987605,0.00048295633,0.000101653655,0.000011266012,0.000068704496,0.000118964555,0.00010477881,0.000020973675,0.00033019745],"genre_scores_gemma":[0.9991352,0.00029603057,0.00006987578,0.000018206829,0.0000058467785,0.000014173356,0.00041728915,0.000011121062,0.000032249933],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994715,0.00003557151,0.00017585003,0.00016521149,0.000026723157,0.00012515511],"domain_scores_gemma":[0.9998712,0.000012680141,0.000038758863,0.00004941425,4.597288e-7,0.000027522441],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000107300206,0.000099065845,0.00013775124,0.00006213752,0.00006346228,0.000003728267,0.00002485449,0.000050627033,0.00007399687],"category_scores_gemma":[4.5144031e-7,0.00010157659,0.00001575574,0.00005108554,0.000075033284,0.000030295623,0.00006105424,0.0001564123,0.000002663357],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017935676,0.00004844374,0.000312111,0.00001243468,0.0000073680562,7.523651e-7,0.00015544347,0.0005283224,0.99669087,0.0000122326055,0.00007134831,0.0021427465],"study_design_scores_gemma":[0.0009852314,0.0001101831,0.0029991223,0.0000035901223,0.000015582418,0.00006191498,0.0011610158,0.0004105269,0.99024165,0.000040618128,0.0037669113,0.00020366306],"about_ca_topic_score_codex":0.000026165691,"about_ca_topic_score_gemma":0.000002348703,"teacher_disagreement_score":0.0064492207,"about_ca_system_score_codex":0.000050062645,"about_ca_system_score_gemma":0.0000015750912,"threshold_uncertainty_score":0.4142173},"labels":[],"label_agreement":null},{"id":"W4282914729","doi":"10.1128/aem.00592-22","title":"Subinhibitory Cefotaxime and Levofloxacin Concentrations Contribute to Selection of Pseudomonas aeruginosa in Coculture with Staphylococcus aureus","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"National Natural Science Foundation of China","keywords":"Pseudomonas aeruginosa; Microbiology; Staphylococcus aureus; Cefotaxime; Pyocyanin; Biology; Quorum sensing; Antibiotics; Levofloxacin; Biofilm; Bacteria; Genetics","score_opus":0.002440230917369523,"score_gpt":0.16419518234418176,"score_spread":0.16175495142681223,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4282914729","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99901986,0.00025667425,0.000023144092,0.000088541616,0.000037224956,0.000267725,0.00025682352,0.0000033946694,0.000046606547],"genre_scores_gemma":[0.9989076,0.000054395558,0.00021868803,0.0002472402,0.000034638044,0.000022030641,0.0004757002,0.000008509599,0.0000311985],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99935514,0.000038675265,0.00013329955,0.00027455724,0.000024978504,0.0001733764],"domain_scores_gemma":[0.99982035,0.0000059227245,0.00005363459,0.00007265393,0.0000029798618,0.000044453715],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005931746,0.00011502686,0.00014766953,0.000028122435,0.000105349834,0.0000052038968,0.000036101603,0.00007527407,0.000022270719],"category_scores_gemma":[0.0000011375834,0.00010585411,0.000014601293,0.000043122687,0.00013357583,0.0000021196888,0.00011243367,0.000087495086,6.449551e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021686639,0.0000507969,0.007557125,0.0000040624973,0.000020548323,0.0000013661522,0.00010745676,0.00006001315,0.9914789,0.0000718376,0.00015810246,0.0002729346],"study_design_scores_gemma":[0.0011971074,0.00057999016,0.0131545495,0.0000034873979,0.000013251491,0.000057138146,0.00057772134,0.0000033138515,0.9662749,0.000004903795,0.017952695,0.0001809253],"about_ca_topic_score_codex":0.000028356604,"about_ca_topic_score_gemma":0.00006077773,"teacher_disagreement_score":0.025203975,"about_ca_system_score_codex":0.000024158513,"about_ca_system_score_gemma":0.000013035965,"threshold_uncertainty_score":0.43166053},"labels":[],"label_agreement":null},{"id":"W4283573956","doi":"10.1128/aem.01421-21","title":"A Newly Identified Group of P-like (PL) Fimbria Genes from Extraintestinal Pathogenic Escherichia coli (ExPEC) Encode Distinct Adhesin Subunits and Mediate Adherence to Host Cells","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds de recherche du Québec; Fonds de recherche du Québec – Nature et technologies; Université Paris-Est Créteil Val-de-Marne; Government of Canada; University of Minnesota","keywords":"Fimbria; Bacterial adhesin; Biology; Escherichia coli; Plasmid; Pilus; Gene; Microbiology; Genetics; Enterobacteriaceae; Host (biology)","score_opus":0.008727728099087437,"score_gpt":0.20332730055668055,"score_spread":0.19459957245759313,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4283573956","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961683,0.0016195255,0.00009509025,0.000030118614,0.00011515823,0.0003732694,0.0015571672,0.000007385577,0.00003396934],"genre_scores_gemma":[0.9969427,0.0005405601,0.00093964546,0.00017250513,0.00006287285,0.00014675163,0.0010548214,0.00002386027,0.00011627884],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99862,0.000118886885,0.0002632155,0.00058951724,0.0000706597,0.00033774588],"domain_scores_gemma":[0.9994885,0.0000499569,0.000109162786,0.00022743142,0.0000053510125,0.00011961466],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014121937,0.00023208087,0.00027372534,0.000037006932,0.00019322768,0.0000147862265,0.00021245054,0.00008345053,0.00014305476],"category_scores_gemma":[0.000011142018,0.0002349556,0.00004497998,0.000053156124,0.00038720394,0.0000035939022,0.0010999332,0.00012680123,0.000008567633],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028857452,0.000092920316,0.0043000993,0.000013424285,0.00007199743,0.000007570472,0.00025747906,0.0000036612034,0.993338,0.00000583263,0.00022103287,0.0013994294],"study_design_scores_gemma":[0.0018188573,0.0015247469,0.11159558,0.000010397441,0.000059042995,0.00004691969,0.0017891597,0.000011893202,0.8720128,0.000044186178,0.010556607,0.0005298426],"about_ca_topic_score_codex":0.00013416556,"about_ca_topic_score_gemma":0.00011172742,"teacher_disagreement_score":0.12132521,"about_ca_system_score_codex":0.00002856874,"about_ca_system_score_gemma":0.00002136147,"threshold_uncertainty_score":0.9581212},"labels":[],"label_agreement":null},{"id":"W4285022889","doi":"10.1128/aem.00968-22","title":"Chitin-Active Lytic Polysaccharide Monooxygenases Are Rare in <i>Cellulomonas</i> Species","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Studies on Chitinases and Chitosanases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Toronto; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Genome British Columbia; Natural Sciences and Engineering Research Council of Canada; Government of Canada; Ontario Genomics; Genome Canada","keywords":"Chitin; Lytic cycle; Polysaccharide; Monooxygenase; Cell wall; Biology; Microbiology; Bacteria; Biochemistry; Enzyme; Genetics","score_opus":0.004398873283479047,"score_gpt":0.16468542671987607,"score_spread":0.16028655343639703,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4285022889","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954876,0.002067858,0.00000571187,0.00011813257,0.000080102036,0.00020279821,0.0011315297,0.000008952602,0.0008973531],"genre_scores_gemma":[0.9969478,0.0005860029,0.000032104836,0.0010605437,0.00009707737,0.00011025875,0.00089445943,0.00002272534,0.00024902265],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989332,0.00004322387,0.00018572534,0.00047870408,0.000042835545,0.00031632438],"domain_scores_gemma":[0.9996602,0.000018759225,0.00008969528,0.00017973804,0.0000012077408,0.000050416045],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004068367,0.00021037883,0.00022155659,0.000043578293,0.0002371123,0.00000706932,0.00013989754,0.0000675999,0.00020284075],"category_scores_gemma":[0.000003569222,0.0002153715,0.000060890015,0.000046988844,0.00022078659,0.0000019355277,0.0005495267,0.00014264893,0.000007051426],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014039005,0.00014988128,0.008392608,0.0000063498333,0.000042405172,0.000017940296,0.00010553923,0.00004930271,0.9895724,0.00005010806,0.000834901,0.00063815486],"study_design_scores_gemma":[0.0022144786,0.00055187545,0.11343169,0.000007870858,0.00003736122,0.0003076038,0.02333423,0.0000047830044,0.788015,0.000117874275,0.07119872,0.0007785297],"about_ca_topic_score_codex":0.000023727709,"about_ca_topic_score_gemma":0.00005542172,"teacher_disagreement_score":0.20155743,"about_ca_system_score_codex":0.000039581802,"about_ca_system_score_gemma":0.000010629834,"threshold_uncertainty_score":0.8782595},"labels":[],"label_agreement":null},{"id":"W4285091813","doi":"10.1128/aem.00594-22","title":"Selection of <i>Anabaena</i> sp. PCC 7938 as a Cyanobacterium Model for Biological ISRU on Mars","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Spaceflight effects on biology","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Freie Hansestadt Bremen; Universität Bremen; Alexander von Humboldt-Stiftung","keywords":"Cyanobacteria; Mars Exploration Program; Anabaena; Selection (genetic algorithm); Astrobiology; Biology; Microbiology; Bacteria; Chemistry; Genetics; Computer science","score_opus":0.009325739216043974,"score_gpt":0.2120609408827113,"score_spread":0.2027352016666673,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4285091813","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99762124,0.000064479624,0.00020126894,0.00036692922,0.00008497493,0.00080055033,0.00027189453,0.000028940674,0.00055974786],"genre_scores_gemma":[0.99541616,0.00007131411,0.0006342874,0.002494268,0.000042396678,0.0002337281,0.00080169016,0.000021998445,0.00028414922],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989678,0.000049502938,0.00021138544,0.00043939528,0.000036617057,0.00029528097],"domain_scores_gemma":[0.99960405,0.00008513938,0.000100384954,0.00014242371,0.000002666749,0.00006535893],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013753439,0.00019059802,0.00037694437,0.000074481184,0.00012248204,0.0000019018427,0.00007406683,0.00016705439,0.00033267064],"category_scores_gemma":[0.0000058162764,0.00015856027,0.000082136816,0.00004524634,0.00025600631,0.000009066401,0.00014965628,0.000195848,0.000019833467],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001427555,0.00030520986,0.0034225527,0.00001943007,0.000053380558,0.00000247969,0.0000780434,0.000080246704,0.9925617,0.00056687143,0.00057372666,0.00090881204],"study_design_scores_gemma":[0.013382808,0.020205827,0.017982345,0.00002051457,0.000306543,0.0021589717,0.0010588847,0.0037405821,0.8533292,0.0014909477,0.08524207,0.0010812928],"about_ca_topic_score_codex":0.000007580083,"about_ca_topic_score_gemma":0.0000010119156,"teacher_disagreement_score":0.13923249,"about_ca_system_score_codex":0.000116548115,"about_ca_system_score_gemma":0.000017304317,"threshold_uncertainty_score":0.64659},"labels":[],"label_agreement":null},{"id":"W4286001364","doi":"10.1128/aem.00822-22","title":"Supercharged MPNs? Automated Determination of High-Throughput Most Probable Number (htMPN) Using Chip-Based 3D Digital PCR","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Throughput; Digital polymerase chain reaction; Chip; Computer science; Computational biology; Embedded system; Computer hardware; Polymerase chain reaction; Biology; Operating system; Genetics; Telecommunications; Gene","score_opus":0.00511449398023538,"score_gpt":0.20821934788712732,"score_spread":0.20310485390689192,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4286001364","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9935955,0.000076886055,0.0050411723,0.000036276684,0.000029898361,0.0003837547,0.0005842645,0.000039871822,0.00021240728],"genre_scores_gemma":[0.9883415,0.000027032696,0.0064133382,0.00030323878,0.000021581996,0.00013283746,0.0046881833,0.000025450901,0.000046832654],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99903107,0.00004469671,0.0002305535,0.0004231763,0.00004018438,0.00023029957],"domain_scores_gemma":[0.999589,0.000008618222,0.00010864638,0.00024905935,0.0000050978174,0.000039574774],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008180196,0.00017520826,0.0001853228,0.000031094325,0.00019964878,0.000008388409,0.00014678489,0.00015329884,0.00010770141],"category_scores_gemma":[0.0000027345857,0.00018235794,0.00004637876,0.000063111846,0.0002712245,0.0000039566853,0.00030344556,0.00010486336,0.0000052435244],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004188039,0.00015891448,0.0021053962,0.0000086791415,0.00002080441,0.0000010599625,0.000013863161,0.00012281994,0.9962553,0.00013505956,0.0001444777,0.0009917844],"study_design_scores_gemma":[0.0012294907,0.0003768218,0.0010844731,0.0000044925473,0.00004432849,0.00020834754,0.000117109535,0.0012088342,0.97552025,0.00020678219,0.019554524,0.0004445224],"about_ca_topic_score_codex":0.000022754937,"about_ca_topic_score_gemma":0.000002247628,"teacher_disagreement_score":0.020734986,"about_ca_system_score_codex":0.00003797625,"about_ca_system_score_gemma":0.000024984694,"threshold_uncertainty_score":0.7436341},"labels":[],"label_agreement":null},{"id":"W4289333790","doi":"10.1128/aem.00891-22","title":"Time-Dependent Biosensor Fluorescence as a Measure of Bacterial Arsenic Uptake Kinetics and Its Inhibition by Dissolved Organic Matter","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Arsenic contamination and mitigation","field":"Environmental Science","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; National Science Foundation","keywords":"Arsenite; Chemistry; Dissolved organic carbon; Arsenate; Arsenic toxicity; Environmental chemistry; Arsenic; Bioavailability; Biology; Organic chemistry","score_opus":0.0028713619494291323,"score_gpt":0.1564764353604284,"score_spread":0.15360507341099927,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4289333790","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99876803,0.00006556064,0.000011623233,0.00014938311,0.00004642287,0.0002807545,0.00020816296,0.000011263809,0.0004588142],"genre_scores_gemma":[0.99847484,0.00004694211,0.000049995982,0.0002658838,0.000010052664,0.000024232602,0.0004601742,0.000014455371,0.00065339945],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991514,0.000053976128,0.0002106586,0.00032782115,0.0000847779,0.00017133678],"domain_scores_gemma":[0.9997216,0.00001866555,0.000105557,0.00009668534,9.1215327e-7,0.000056586046],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009505069,0.00013801227,0.00014657098,0.000021937627,0.00013086427,0.0000061168453,0.0000663764,0.00006767337,0.010756043],"category_scores_gemma":[0.0000024664694,0.00014212859,0.000020940524,0.00004119802,0.0002482866,0.000039952232,0.00033487726,0.0001019161,0.0002658282],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004109657,0.000097438846,0.0003373577,0.0000032894227,0.000008622349,0.0000011899583,0.00033470945,0.0000036521662,0.99686575,0.000014107368,0.0005518172,0.0017409979],"study_design_scores_gemma":[0.0019678203,0.00035873748,0.014228728,0.0000058518376,0.000055035416,0.00023487945,0.0011402161,0.000081969054,0.96980506,0.00007686314,0.0116239255,0.00042093522],"about_ca_topic_score_codex":0.0000068746353,"about_ca_topic_score_gemma":0.0000038861417,"teacher_disagreement_score":0.027060682,"about_ca_system_score_codex":0.000097797485,"about_ca_system_score_gemma":0.0000030359088,"threshold_uncertainty_score":0.99014825},"labels":[],"label_agreement":null},{"id":"W4293088426","doi":"10.1128/aem.00228-22","title":"Climate-Endangered Arctic Epishelf Lake Harbors Viral Assemblages with Distinct Genetic Repertoires","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Center for Northern Studies; Université Laval","funders":"Fonds de recherche du Québec; Natural Sciences and Engineering Research Council of Canada; Government of Canada; Fonds de recherche du Québec – Nature et technologies; ArcticNet","keywords":"Biology; Ecology; Ecological niche; Ecosystem; Halocline; Marine ecosystem; Niche; Freshwater ecosystem; Habitat","score_opus":0.0029637501071024253,"score_gpt":0.16617709967923686,"score_spread":0.16321334957213443,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4293088426","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99777067,0.00007725885,0.00002761793,0.0001643821,0.00011300625,0.00027043794,0.00032395156,0.0000391921,0.0012134748],"genre_scores_gemma":[0.99792975,0.00008378428,0.0004631182,0.0005715713,0.000029334846,0.000121995356,0.00038737847,0.00003272711,0.00038034847],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99866045,0.000062217056,0.00021899396,0.0005606196,0.00006167586,0.00043603085],"domain_scores_gemma":[0.999528,0.00003687319,0.000105002335,0.00024196421,5.828324e-7,0.00008759646],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007529709,0.00023951987,0.00021651169,0.000031027652,0.0005919042,0.000027921003,0.00018517087,0.00005859472,0.00787811],"category_scores_gemma":[0.0000014279791,0.0002101177,0.000048935704,0.00006164975,0.00048187329,0.000067634996,0.000674421,0.00025070057,0.0001845667],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000088969224,0.00016790284,0.03065147,0.0000064733454,0.000025346522,0.00002715493,0.0002018259,0.000092084076,0.9642819,0.000011849624,0.00042646483,0.0040185433],"study_design_scores_gemma":[0.0010137516,0.00053669955,0.8626929,0.0000070913147,0.000080087164,0.0011462594,0.00072016846,0.000023778635,0.0153857935,0.000051119583,0.11772291,0.0006194432],"about_ca_topic_score_codex":0.00016231793,"about_ca_topic_score_gemma":0.00033388232,"teacher_disagreement_score":0.9488961,"about_ca_system_score_codex":0.0001800647,"about_ca_system_score_gemma":0.0000036961403,"threshold_uncertainty_score":0.9930288},"labels":[],"label_agreement":null},{"id":"W4293445828","doi":"10.1128/aem.01062-22","title":"Vertical and Horizontal Transmission of Cell Fusing Agent Virus in Aedes aegypti","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Brock University","funders":"Economic and Social Research Council; Natural Sciences and Engineering Research Council of Canada; Brock University; Royal Society; Engineering and Physical Sciences Research Council; National Institute for Health and Care Research; Biotechnology and Biological Sciences Research Council; Liverpool School of Tropical Medicine; UK Research and Innovation; Government of Canada; Wellcome Trust","keywords":"Horizontal transmission; Aedes aegypti; Biology; Transmission (telecommunications); Arbovirus; Vector (molecular biology); Dengue fever; Virology; Aedes; Dengue virus; Zika virus; Virus; Zoology; Mating; Flavivirus; Larva; Ecology; Genetics","score_opus":0.004060124084800174,"score_gpt":0.1825295955646752,"score_spread":0.17846947147987505,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4293445828","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99737334,0.001974629,0.000028813465,0.00007393256,0.000021554106,0.00021393994,0.000049385424,0.0000046390546,0.0002597776],"genre_scores_gemma":[0.9992072,0.00028233466,0.000078645106,0.00026398277,0.000012850047,0.000021744816,0.00010360564,0.000008835047,0.000020781374],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99941945,0.000023343637,0.00015427064,0.00021545822,0.000034807104,0.00015268124],"domain_scores_gemma":[0.99982435,0.000016646896,0.000019567868,0.00007051567,4.4142658e-7,0.00006850024],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000049138092,0.00009296349,0.00020364713,0.000035193487,0.000058973514,0.0000019982222,0.000028688055,0.00004362466,0.00032259373],"category_scores_gemma":[4.2643873e-7,0.000083805346,0.000032973174,0.000022659271,0.00012177097,0.000008406615,0.0000839458,0.00010872934,0.0000019115064],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000461752,0.0003103492,0.0037880365,0.000027634429,0.000012503175,0.000016873666,0.00019153168,0.000004268837,0.98259467,0.000055693843,0.000021214952,0.012515443],"study_design_scores_gemma":[0.01978396,0.0033519766,0.210728,0.000043379256,0.00048034042,0.00054224656,0.0072043776,0.0006801202,0.72304416,0.00023754044,0.033177268,0.0007266388],"about_ca_topic_score_codex":0.000028036138,"about_ca_topic_score_gemma":0.0000016846047,"teacher_disagreement_score":0.25955054,"about_ca_system_score_codex":0.00003898806,"about_ca_system_score_gemma":0.0000080628315,"threshold_uncertainty_score":0.3532175},"labels":[],"label_agreement":null},{"id":"W4293447104","doi":"10.1128/aem.01003-22","title":"Dynamic Fluctuation and Niche Differentiation of Fungal Pathogens Infecting Bell Pepper Plants","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; University of British Columbia","funders":"Mitacs","keywords":"Niche; Biology; Pepper; Botany; Ecology; Food science","score_opus":0.005396224724729603,"score_gpt":0.16616986776920029,"score_spread":0.16077364304447067,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4293447104","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.999072,0.00013501452,0.000003067479,0.000038674894,0.00005315949,0.00010065392,0.00052116707,0.000007908162,0.000068355796],"genre_scores_gemma":[0.9985325,0.00014679373,0.000017954015,0.00006842914,0.0000086972295,0.000010944367,0.0011813449,8.1299487e-7,0.00003257572],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999538,0.00004702577,0.00012530886,0.00015560379,0.000022497512,0.000111534464],"domain_scores_gemma":[0.99980754,0.00006914625,0.00007762189,0.000025805877,0.0000010700046,0.000018812672],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007035498,0.00007883501,0.0001032645,0.000011707557,0.00028164682,0.0000063982134,0.000047429683,0.00004098757,0.00030213787],"category_scores_gemma":[0.0000014982556,0.000041143023,0.000019658526,0.00002507362,0.000059359176,0.000024677156,0.0001692857,0.000112899725,0.0000033452118],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019671419,0.00006117564,0.019527992,0.0000020170273,0.000010309217,3.1501813e-7,0.00011251274,0.0000049057126,0.9657088,0.000010168533,0.000013719865,0.01452842],"study_design_scores_gemma":[0.00031865534,0.0002724623,0.9509919,0.000003735078,0.00002091738,0.0002521886,0.0019592105,0.00015015899,0.04200801,0.00010205605,0.0037314133,0.00018928981],"about_ca_topic_score_codex":0.00006546387,"about_ca_topic_score_gemma":0.000057097655,"teacher_disagreement_score":0.9314639,"about_ca_system_score_codex":0.000024091238,"about_ca_system_score_gemma":0.0000010091086,"threshold_uncertainty_score":0.3308198},"labels":[],"label_agreement":null},{"id":"W4297255449","doi":"10.1128/aem.00530-22","title":"Sustained Drought, but Not Short-Term Warming, Alters the Gut Microbiomes of Wild <i>Anolis</i> Lizards","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Species Distribution and Climate Change","field":"Environmental Science","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Smithsonian Tropical Research Institute; Northeastern University; Simons Foundation; National Science Foundation","keywords":"Anolis; Microbiome; Biology; Ecology; Climate change; Lizard; Host (biology); Term (time); Bioinformatics","score_opus":0.00930768559224352,"score_gpt":0.2010686820475694,"score_spread":0.19176099645532588,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4297255449","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936639,0.0001521531,0.000012096465,0.0004242597,0.0001332772,0.00033546344,0.0010829015,0.000023892606,0.004172064],"genre_scores_gemma":[0.996729,0.00021413938,0.000019652007,0.0015718068,0.000020566522,0.000080006816,0.00077847077,0.000019703399,0.00056665356],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99870425,0.000061900646,0.00028062658,0.00042964044,0.00010399867,0.00041958585],"domain_scores_gemma":[0.9994959,0.00004134423,0.000103781604,0.00029044363,9.43281e-7,0.00006754948],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00017469424,0.00022363363,0.0002392419,0.000029477347,0.00044290168,0.000013265226,0.00037010323,0.00007394868,0.016434986],"category_scores_gemma":[0.0000016841477,0.00018148753,0.000083561004,0.00010873943,0.0010521996,0.000040101622,0.0014688692,0.00018785163,0.00010142374],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055712364,0.00013050223,0.005012391,0.0000070036785,0.000024972158,0.0000043007844,0.00043952517,0.000015387162,0.98732114,0.00027502756,0.005577983,0.0011360595],"study_design_scores_gemma":[0.002052683,0.00040692804,0.04898791,0.00000487289,0.000122052494,0.00049302523,0.03004351,0.000019354691,0.43249875,0.00013100774,0.4843098,0.000930093],"about_ca_topic_score_codex":0.00006926139,"about_ca_topic_score_gemma":0.00001716386,"teacher_disagreement_score":0.5548224,"about_ca_system_score_codex":0.0003841467,"about_ca_system_score_gemma":0.000005429736,"threshold_uncertainty_score":0.9844641},"labels":[],"label_agreement":null},{"id":"W4302028473","doi":"10.1128/aem.00922-22","title":"Balancing Trade-Offs Imposed by Growth Media and Mass Spectrometry for Bacterial Exometabolomics","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Pacific Northwest National Laboratory; U.S. National Library of Medicine; Office of Science; National Institutes of Health; Biological and Environmental Research; National Institute of Allergy and Infectious Diseases; Environmental Molecular Sciences Laboratory; U.S. Department of Energy","keywords":"Microorganism; Bacterial growth; Metabolite; Biochemical engineering; Limiting; Mass spectrometry; Soil bacteria; Bacteria; Biotechnology; Biological system; Biology; Computer science; Chemistry; Environmental science; Chromatography; Biochemistry; Engineering; Genetics","score_opus":0.0031753707926888528,"score_gpt":0.1678651265587442,"score_spread":0.16468975576605535,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4302028473","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933954,0.0037176132,0.00045908324,0.00020466794,0.00025163236,0.00031254906,0.0015414889,0.00000893719,0.00010862314],"genre_scores_gemma":[0.99226207,0.0024944092,0.0019969577,0.00045809106,0.00017219053,0.00010632722,0.0024201525,0.00003110525,0.000058685404],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988219,0.0000371151,0.00020992273,0.00053501636,0.000039328355,0.00035668543],"domain_scores_gemma":[0.999659,0.00003790831,0.00008964857,0.00013880487,0.0000014925436,0.00007314607],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001734077,0.0002269646,0.00031694752,0.000057571913,0.0002795406,0.000014065519,0.00012380155,0.00011065629,0.00007038457],"category_scores_gemma":[0.000009081069,0.00022918721,0.00005736115,0.00004576118,0.00019879118,0.0000027437607,0.00030879583,0.000120769284,8.7598784e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001676134,0.00005214902,0.0011716547,0.000009380996,0.000101686426,5.746477e-7,0.000048929654,5.1703853e-7,0.9958036,0.00037137436,0.0018811806,0.00039137423],"study_design_scores_gemma":[0.003589363,0.00072245393,0.0035727473,9.867628e-7,0.000101558944,0.00012240374,0.000950036,0.000009513002,0.80395734,0.0008739711,0.18547574,0.00062391104],"about_ca_topic_score_codex":0.0000028351965,"about_ca_topic_score_gemma":0.0000013164017,"teacher_disagreement_score":0.19184625,"about_ca_system_score_codex":0.000029001603,"about_ca_system_score_gemma":0.000009258698,"threshold_uncertainty_score":0.9345983},"labels":[],"label_agreement":null},{"id":"W4308365972","doi":"10.1128/aem.01654-22","title":"Impacts of Seawater pH Buffering on the Larval Microbiome and Carry-Over Effects on Later-Life Disease Susceptibility in Pacific Oysters","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Tula Foundation; Shell (Canada); Vancouver Island University; Fisheries and Oceans Canada","funders":"National Research Council Canada; Fisheries and Oceans Canada; Canada Research Chairs; Government of Canada","keywords":"Threatened species; Outbreak; Biology; Microbiome; Seawater; Shellfish; Vibrio; Larva; Disease; Zoology; Fishery; Ecology; Aquatic animal; Bacteria; Medicine; Bioinformatics; Fish <Actinopterygii>; Virology; Habitat; Genetics","score_opus":0.0034703563836601292,"score_gpt":0.16739950634247577,"score_spread":0.16392914995881563,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4308365972","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973112,0.00081026217,6.054504e-7,0.0003794124,0.00017983446,0.00073282974,0.00044700096,0.00001875723,0.00012012115],"genre_scores_gemma":[0.99777466,0.000073736184,0.0000026527046,0.0011130156,0.000013627396,0.000070698676,0.0007412395,0.000022895601,0.00018750252],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984384,0.0002619538,0.00027517608,0.00056530733,0.000026292188,0.00043287955],"domain_scores_gemma":[0.99937767,0.00014566311,0.00010711741,0.00031053287,0.0000016199142,0.00005740502],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023621265,0.0003142833,0.00035278525,0.00011131965,0.0002604383,0.00001178262,0.00017652506,0.000117325915,0.00041028744],"category_scores_gemma":[0.00000631193,0.00022815539,0.0000787751,0.00006958516,0.0004888584,0.000027529142,0.0004661406,0.00034225892,0.00005354638],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007978527,0.0002540961,0.03104365,0.00007054242,0.00012388488,0.000010028546,0.0005868411,0.000008286429,0.96544397,0.00022151128,0.0011168086,0.00032252137],"study_design_scores_gemma":[0.010724825,0.0013659212,0.5065089,0.00010869904,0.00031123895,0.000067722045,0.006108629,0.000004061752,0.4381433,0.00021044095,0.035101235,0.0013450029],"about_ca_topic_score_codex":0.000043126067,"about_ca_topic_score_gemma":0.000011063887,"teacher_disagreement_score":0.52730066,"about_ca_system_score_codex":0.00010264413,"about_ca_system_score_gemma":0.000010529466,"threshold_uncertainty_score":0.93039066},"labels":[],"label_agreement":null},{"id":"W4308636433","doi":"10.1128/aem.01504-22","title":"Bipartite <i>rgp</i> Locus Diversity in Streptococcus thermophilus Corresponds to Backbone and Side Chain Differences of Its Rhamnose-Containing Cell Wall Polysaccharide","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"Science Foundation Ireland","keywords":"Streptococcus thermophilus; Biology; Locus (genetics); Genetics; Gene; Genome; Microbiology; Bacteria","score_opus":0.008418395267841517,"score_gpt":0.18415788663813806,"score_spread":0.17573949137029654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4308636433","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99836046,0.00015879358,0.0000073614883,0.00013449152,0.000085327825,0.0003683589,0.00020940888,0.000010333341,0.0006654558],"genre_scores_gemma":[0.9988845,0.000107106825,0.000042649124,0.0005273251,0.000010121835,0.000042592485,0.000033303022,0.000012219096,0.00034020215],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988761,0.00006633048,0.0002436039,0.00044545616,0.000054381177,0.00031413525],"domain_scores_gemma":[0.9996011,0.000057753787,0.00010670521,0.0001392329,6.7240285e-7,0.00009453434],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00013274653,0.00018895867,0.00026299866,0.00006975915,0.00027583505,0.000009860282,0.00018582714,0.000062597246,0.0013504031],"category_scores_gemma":[0.0000017527027,0.00018854006,0.000034902754,0.000097800235,0.00021198459,0.0000604239,0.0018050154,0.00020274751,0.00004336652],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015532947,0.00013965166,0.027985236,0.000005232215,0.000009398509,0.00000790555,0.0016665453,0.00011387438,0.9677162,0.000013858063,0.000049448277,0.0021373136],"study_design_scores_gemma":[0.002617631,0.0011176163,0.77745205,0.000019583003,0.0000577413,0.00011024083,0.005745613,0.00011672465,0.20336282,0.000112918984,0.008417412,0.00086967024],"about_ca_topic_score_codex":0.000604339,"about_ca_topic_score_gemma":0.0001972617,"teacher_disagreement_score":0.7643534,"about_ca_system_score_codex":0.00013168296,"about_ca_system_score_gemma":0.0000038618646,"threshold_uncertainty_score":0.9995625},"labels":[],"label_agreement":null},{"id":"W4309245555","doi":"10.1128/aem.01755-22","title":"Human Gut Metagenomes Encode Diverse GH156 Sialidases","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; W. Garfield Weston Foundation; Government of Canada","keywords":"Sialidase; Glycan; Biology; Microbiome; Human microbiome; Sialic acid; Metagenomics; Receptor; Computational biology; Immune system; Enzyme; Biochemistry; Microbiology; Glycoprotein; Neuraminidase; Genetics; Gene","score_opus":0.006921087016956624,"score_gpt":0.20651196548156678,"score_spread":0.19959087846461016,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4309245555","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99754584,0.00087564386,0.000015234973,0.00007662408,0.00008843951,0.00020524225,0.00040082654,0.00001127643,0.00078085164],"genre_scores_gemma":[0.9955838,0.0001679259,0.0001380528,0.0012940542,0.000082239356,0.00004678927,0.0017780276,0.000020487787,0.0008886223],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9990086,0.00006035676,0.00016714948,0.00043327984,0.000030217436,0.00030037496],"domain_scores_gemma":[0.9996458,0.0000050100125,0.00006787568,0.00021093973,0.0000011887803,0.00006913506],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010065502,0.00017213245,0.00017560832,0.000038280225,0.00049783033,0.000008405253,0.00015887091,0.0000879114,0.0005072006],"category_scores_gemma":[8.543676e-7,0.00017692478,0.00005711078,0.000026588192,0.00021742833,0.0000016470502,0.0005916513,0.00012859449,0.000027951459],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002505389,0.00010022203,0.0017581343,0.0000065312174,0.000043705128,0.0000035520072,0.00008961045,0.000019837791,0.99502003,0.00018703318,0.0022623895,0.0004839211],"study_design_scores_gemma":[0.0021889596,0.00095752697,0.015227339,0.0000019334732,0.000082535356,0.00036134178,0.0040740394,0.0000014828207,0.24831127,0.0001721735,0.72786933,0.00075204996],"about_ca_topic_score_codex":0.000025354806,"about_ca_topic_score_gemma":0.000008491309,"teacher_disagreement_score":0.74670875,"about_ca_system_score_codex":0.000035167854,"about_ca_system_score_gemma":0.000013808652,"threshold_uncertainty_score":0.7214783},"labels":[],"label_agreement":null},{"id":"W4310398278","doi":"10.1128/aem.01593-22","title":"Maternal Mycobiome, but Not Antibiotics, Alters Fungal Community Structure in Neonatal Piglets","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Antibiotics; Amoxicillin; Biology; Clavulanic acid; Microbiology; Microbial population biology; Bacteria; Genetics","score_opus":0.00447009016490461,"score_gpt":0.18960633813612335,"score_spread":0.18513624797121875,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4310398278","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99763066,0.00032231328,0.000011507141,0.00007015143,0.0001768126,0.00021405102,0.0015004781,0.0000075676685,0.000066447996],"genre_scores_gemma":[0.9957698,0.00011922311,0.00014308823,0.0014433821,0.00005780886,0.0000038928056,0.0023286822,0.000024187142,0.00010996451],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988452,0.00014549511,0.00022879464,0.00035979116,0.000038137012,0.00038257556],"domain_scores_gemma":[0.999584,0.000010753781,0.000077175355,0.0002563779,0.0000014761149,0.000070169925],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014214845,0.00020870654,0.00020669673,0.0000633741,0.00033696156,0.000010534353,0.00023615477,0.00015088875,0.0001617738],"category_scores_gemma":[0.0000013450017,0.00022015799,0.000039144616,0.000037424215,0.00026447533,0.0000026476357,0.0007090423,0.0004540991,0.000009002004],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016480478,0.00006687759,0.015677866,0.00001715552,0.000023414066,0.000009006698,0.00017805939,0.000033809258,0.9827474,0.000033379074,0.00027270542,0.00077555643],"study_design_scores_gemma":[0.0021825111,0.00053583283,0.15682821,0.0000044955923,0.000016079886,0.0010161176,0.0018825744,0.000005966032,0.80429184,0.00005080185,0.032696865,0.00048870494],"about_ca_topic_score_codex":0.00021415709,"about_ca_topic_score_gemma":0.000104192324,"teacher_disagreement_score":0.17845552,"about_ca_system_score_codex":0.00006678371,"about_ca_system_score_gemma":0.000020730473,"threshold_uncertainty_score":0.8977782},"labels":[],"label_agreement":null},{"id":"W4311935231","doi":"10.1128/aem.01828-22","title":"Accelerating the Detection of Bacteria in Food Using Artificial Intelligence and Optical Imaging","year":2022,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Spectroscopy Techniques in Biomedical and Chemical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; U.S. Department of Agriculture; National Institute of Food and Agriculture; National Science Foundation","keywords":"Bacteria; Artificial intelligence; Biology; Computer science; Biological system; Genetics","score_opus":0.014443934044070105,"score_gpt":0.2506051631890391,"score_spread":0.23616122914496898,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4311935231","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99722487,0.00024902623,0.002288669,0.000046418103,0.000017272314,0.0000914939,0.000014339013,0.0000020264413,0.00006589094],"genre_scores_gemma":[0.998969,0.00009733304,0.00076948764,0.000082188315,0.000023115406,0.000020275507,0.00003201586,0.000004926459,0.0000016539719],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995175,0.000024727991,0.00012331206,0.00017656873,0.000028178005,0.00012973738],"domain_scores_gemma":[0.99986964,0.000015729436,0.000025776604,0.00006787313,8.6578405e-7,0.000020115463],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001240966,0.000058846428,0.00006813359,0.000018080324,0.00008487516,0.000004599022,0.00007473431,0.000040194114,0.00002339169],"category_scores_gemma":[0.0000053266863,0.00004779212,0.00001230898,0.000031474356,0.00034985936,0.0000010743044,0.00039289176,0.00012462906,1.3932879e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040970393,0.000031164993,0.00023686708,0.0000031132363,0.0000043294563,3.273682e-7,0.00001909039,0.0000027470346,0.98524743,0.00028489053,0.0000011694176,0.0141279055],"study_design_scores_gemma":[0.0000522951,0.00014555048,0.00026236608,0.0000011407632,0.0000021825933,0.000047055284,0.00034932574,0.00014877327,0.9973679,0.00092939124,0.00063946476,0.00005453546],"about_ca_topic_score_codex":0.000005622887,"about_ca_topic_score_gemma":0.0000020614434,"teacher_disagreement_score":0.01407337,"about_ca_system_score_codex":0.000018766927,"about_ca_system_score_gemma":0.000004894381,"threshold_uncertainty_score":0.1948906},"labels":[],"label_agreement":null},{"id":"W4315620711","doi":"10.1128/aem.01314-22","title":"Soil Chemistry and Soil History Significantly Structure Oomycete Communities in <i>Brassicaceae</i> Crop Rotations","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Université de Montréal","funders":"Agriculture and Agri-Food Canada; Canola Council of Canada; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation; Natural Sciences and Engineering Research Council of Canada; Government of Canada; Saskatchewan Pulse Growers","keywords":"Oomycete; Rhizosphere; Brassicaceae; Biology; Crop; Ecology; Biodiversity","score_opus":0.0072859805072256496,"score_gpt":0.1515755727913555,"score_spread":0.14428959228412985,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4315620711","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998018,0.0006452367,1.9005216e-7,0.00015926936,0.00002974037,0.000083545936,0.00066465454,0.000027201024,0.00037213767],"genre_scores_gemma":[0.99715126,0.0010041344,0.000017851338,0.0001923892,0.000031524556,0.000013106521,0.0012112381,0.0000014302589,0.00037708387],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993994,0.000028109767,0.00012580006,0.00020231641,0.000025062633,0.00021930375],"domain_scores_gemma":[0.9997824,0.00008364209,0.000042586373,0.000043739707,0.0000010422197,0.00004662403],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000056138808,0.00012548236,0.00015000395,0.000007910999,0.00013640091,0.000009769688,0.00009043124,0.000121909456,0.00017286208],"category_scores_gemma":[0.0000010718403,0.000061303115,0.000018627177,0.00005415644,0.0003313226,0.000021241132,0.00009639161,0.00013266662,0.000010062909],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012203304,0.0000171859,0.0028616667,0.00000849542,0.0000055339533,0.0000048572683,0.00012668887,0.000013414516,0.99350935,0.000021199,0.00048455942,0.0029348168],"study_design_scores_gemma":[0.0015835149,0.00018347902,0.536532,0.000059218863,0.00004926657,0.00026280718,0.01493222,0.00020492086,0.15576582,0.0009780421,0.28803548,0.0014132849],"about_ca_topic_score_codex":0.000079466045,"about_ca_topic_score_gemma":0.00062568916,"teacher_disagreement_score":0.8377436,"about_ca_system_score_codex":0.000034739554,"about_ca_system_score_gemma":0.0000031455659,"threshold_uncertainty_score":0.24998686},"labels":[],"label_agreement":null},{"id":"W4316663013","doi":"10.1128/aem.01863-22","title":"Loosenin-Like Proteins from <i>Phanerochaete carnosa</i> Impact Both Cellulose and Chitin Fiber Networks","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant and Biological Electrophysiology Studies","field":"Agricultural and Biological Sciences","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Basic Energy Sciences; HORIZON EUROPE Framework Programme; HORIZON EUROPE European Research Council; Office of Science; Novo Nordisk; Novo Nordisk Fonden; Academy of Finland; Aalto-Yliopisto; Biocenter, University of Oulu; U.S. Department of Energy; European Commission; University of Toronto; Jenny ja Antti Wihurin Rahasto; Biocenter Finland","keywords":"Chitin; Cellulose; Phanerochaete; Fiber; Chemistry; Biology; Biochemistry; Polymer science; Enzyme; Chitosan; Organic chemistry","score_opus":0.00491644286815825,"score_gpt":0.15679040864007748,"score_spread":0.15187396577191922,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4316663013","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99785876,0.0010120134,7.9637135e-7,0.00017406154,0.000042072264,0.00025523303,0.00043738552,0.00007710878,0.0001425941],"genre_scores_gemma":[0.99502325,0.001459408,0.000022819057,0.0004637725,0.00017251387,0.00003448713,0.0025201035,0.0000020609184,0.0003015748],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987607,0.00005153672,0.00016354604,0.00050886004,0.000029539888,0.000485803],"domain_scores_gemma":[0.99962753,0.00016960289,0.00006454321,0.000044591383,0.0000012962859,0.00009242155],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000064189306,0.00025756404,0.00031591507,0.000010284228,0.00023323575,0.000015843469,0.00011093814,0.00024149353,0.00022021442],"category_scores_gemma":[0.0000019036836,0.00009962986,0.000060636998,0.00008698027,0.00040993097,0.00002207009,0.0002806453,0.00017770148,0.00010462059],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000071914634,0.000030314144,0.0036521414,0.0000012389673,0.000047671932,0.00000807471,0.0000258247,0.0000047941517,0.9814882,0.000009840198,0.0009049521,0.013754989],"study_design_scores_gemma":[0.0011473178,0.0016371158,0.909396,0.00001648777,0.00008670182,0.00010584167,0.0004299004,0.00015483767,0.04242942,0.0010240815,0.0423943,0.0011779928],"about_ca_topic_score_codex":0.00017578622,"about_ca_topic_score_gemma":0.000059145354,"teacher_disagreement_score":0.93905884,"about_ca_system_score_codex":0.000014924864,"about_ca_system_score_gemma":0.0000014212283,"threshold_uncertainty_score":0.4062788},"labels":[],"label_agreement":null},{"id":"W4317939770","doi":"10.1128/aem.01869-22","title":"Characterization of Escherichia coli and Other Enterobacterales Resistant to Extended-Spectrum Cephalosporins Isolated from Dairy Manure in Ontario, Canada","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Western University; Public Health Agency of Canada; Agriculture and Agri-Food Canada; University of Guelph","funders":"Canadian Institutes of Health Research; Joint Programming Initiative on Antimicrobial Resistance","keywords":"Multilocus sequence typing; Plasmid; Escherichia coli; Biology; Replicon; Cephalosporin; Manure; Microbiology; Polymerase chain reaction; Whole genome sequencing; Antibiotic resistance; Genetics; Bacteria; Genome; Gene; Genotype; Antibiotics; Ecology","score_opus":0.0037762285082106432,"score_gpt":0.169042412338319,"score_spread":0.16526618383010835,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4317939770","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99914026,0.000037574508,0.00001692962,0.00006265394,0.00006127702,0.00019823146,0.0004225393,0.000004939958,0.000055604058],"genre_scores_gemma":[0.99770683,0.00009877702,0.00008124137,0.00030333945,0.000018801376,0.0000075398484,0.0015353612,0.000016928581,0.00023120637],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99920136,0.000021652637,0.00020600519,0.00034671757,0.000025545522,0.0001986951],"domain_scores_gemma":[0.9997232,0.000006399429,0.00006855026,0.00015209486,0.0000012798008,0.000048473215],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000036996527,0.00014475334,0.00018385191,0.00003011562,0.000030082856,0.000006240207,0.00007602911,0.00011962078,0.00006299811],"category_scores_gemma":[9.341192e-7,0.0001451542,0.000014071118,0.000038017326,0.00009371812,0.0000025736463,0.00012432689,0.000065427426,0.000003144541],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002370346,0.000024574656,0.12215471,0.000006689539,0.000025803556,0.0000038879007,0.00010781669,0.0000012252552,0.8773096,0.000016366319,0.00005601707,0.000056226134],"study_design_scores_gemma":[0.00036024826,0.000084212705,0.80377644,0.000013053026,0.000006605464,0.0000026531623,0.00013557052,0.0000013138034,0.18496513,0.000015548332,0.010503246,0.00013598414],"about_ca_topic_score_codex":0.101745956,"about_ca_topic_score_gemma":0.60982925,"teacher_disagreement_score":0.6923445,"about_ca_system_score_codex":0.000056988032,"about_ca_system_score_gemma":0.000032785534,"threshold_uncertainty_score":0.9042356},"labels":[],"label_agreement":null},{"id":"W4318620410","doi":"10.1128/aem.01704-22","title":"Thermophilic Carboxylesterases from Hydrothermal Vents of the Volcanic Island of Ischia Active on Synthetic and Biobased Polymers and Mycotoxins","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enzyme Catalysis and Immobilization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Toronto","funders":"Agencia Estatal de Investigación; Natural Environment Research Council; Sight Research UK; Ministerio de Ciencia e Innovación; European Commission; Llywodraeth Cymru; European Regional Development Fund; Horizon 2020 Framework Programme; UK Research and Innovation","keywords":"Hydrothermal vent; Thermophile; Volcano; Hydrothermal circulation; Mycotoxin; Ecology; Environmental science; Chemistry; Biology; Geology; Geochemistry; Botany; Bacteria; Paleontology","score_opus":0.003151419677372043,"score_gpt":0.16966495173182009,"score_spread":0.16651353205444805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4318620410","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99885,0.0004973681,0.0000021649669,0.000022504408,0.00002375182,0.00013963228,0.0004046643,0.000001973773,0.00005795055],"genre_scores_gemma":[0.99904275,0.00047617598,0.0000026681369,0.000090466194,0.000013495813,0.000008623971,0.00032272248,0.000010220894,0.000032883465],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99952734,0.000029641848,0.0001096791,0.00022048481,0.000021617663,0.00009126191],"domain_scores_gemma":[0.99974644,0.0000186763,0.00007099765,0.00014258089,0.0000011386221,0.000020161599],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000028734063,0.00009952775,0.00012865516,0.000022028013,0.0000389657,0.0000022016584,0.000053191965,0.000082990206,0.000016021255],"category_scores_gemma":[0.0000028149846,0.00007234012,0.000027091644,0.0000295698,0.00026614958,0.0000016017949,0.00010093021,0.00003391931,0.0000011090785],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006248376,0.00003173097,0.0042830454,0.0000073522656,0.000048634804,1.2218833e-7,0.00010031749,0.0000072418065,0.9943455,0.000013836137,0.000011840723,0.001087924],"study_design_scores_gemma":[0.00044907193,0.00012595048,0.05422553,0.000010920074,0.000030245908,0.0000034841778,0.00021504915,0.000012931654,0.9445838,0.00001849381,0.00024828935,0.00007624577],"about_ca_topic_score_codex":0.000024686411,"about_ca_topic_score_gemma":0.00001983649,"teacher_disagreement_score":0.049942486,"about_ca_system_score_codex":0.00000402115,"about_ca_system_score_gemma":0.0000046226205,"threshold_uncertainty_score":0.29499444},"labels":[],"label_agreement":null},{"id":"W4318620490","doi":"10.1128/aem.02007-22","title":"Minimizing the Lag Phase of Cupriavidus necator Growth under Autotrophic, Heterotrophic, and Mixotrophic Conditions","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Geochemistry and Elemental Analysis","field":"Earth and Planetary Sciences","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Ontario Ministry of Economic Development, Job Creation and Trade; Ontario Ministry of Research and Innovation; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Mixotroph; Cupriavidus necator; Heterotroph; Autotroph; Lag; Lag time; Phase lag; Biology; Bacteria; Chemistry; Biological system; Polyhydroxyalkanoates; Mathematics","score_opus":0.009021890582810041,"score_gpt":0.1968683363695615,"score_spread":0.18784644578675147,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4318620490","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982516,0.00031188034,0.0000069633556,0.0005745859,0.0000405667,0.00011171576,0.0005219321,0.000020544725,0.0001602176],"genre_scores_gemma":[0.99777967,0.00052126014,0.000042485106,0.00027925408,0.000033543507,0.0000049068517,0.0012795967,0.0000035668525,0.000055697466],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992356,0.000031465377,0.00018920265,0.00026019078,0.00004355423,0.00024004116],"domain_scores_gemma":[0.9996729,0.00006960354,0.00007093603,0.000117299765,0.0000017742406,0.00006750035],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008489425,0.00013873121,0.00018412764,0.00004321841,0.00024334347,0.000013367186,0.000105020714,0.000075563854,0.00071782334],"category_scores_gemma":[0.0000019184943,0.00009862586,0.000043267737,0.000100930694,0.00055108167,0.000034100656,0.00005036944,0.00010119817,0.000079703525],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039717455,0.00004123735,0.012458573,0.000021738275,0.000091092785,0.0000050525887,0.0001448757,0.0003190714,0.98497677,0.00013473464,0.00021600377,0.0015511365],"study_design_scores_gemma":[0.009209278,0.0012230593,0.77512157,0.000049926606,0.0008194843,0.0007039232,0.007980619,0.0047824164,0.17245333,0.017311156,0.008598444,0.0017468043],"about_ca_topic_score_codex":0.00011088068,"about_ca_topic_score_gemma":0.000021074246,"teacher_disagreement_score":0.8125234,"about_ca_system_score_codex":0.000003673787,"about_ca_system_score_gemma":0.0000047780736,"threshold_uncertainty_score":0.7859662},"labels":[],"label_agreement":null},{"id":"W4321452636","doi":"10.1128/aem.01628-22","title":"The Gut Commensal Escherichia coli Aggravates High-Fat-Diet-Induced Obesity and Insulin Resistance in Mice","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Diet and metabolism studies","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario; Stollery Children's Hospital; University of Ottawa; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; University of Alberta; Alberta Innovates; Alberta Innovates - Technology Futures; Canada Research Chairs; Government of Canada","keywords":"Insulin resistance; Obesity; Escherichia coli; Biology; Insulin; Microbiology; Medicine; Food science; Endocrinology; Biochemistry; Gene","score_opus":0.008148618858101623,"score_gpt":0.2050966684013663,"score_spread":0.1969480495432647,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4321452636","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947277,0.0030010687,4.2735928e-7,0.0011743048,0.0001197193,0.00030824158,0.0000309547,0.000029889325,0.00060773356],"genre_scores_gemma":[0.99272066,0.0059585935,0.00013066156,0.00049679563,0.000055141798,0.000042615735,0.000094033065,0.000014166776,0.00048730258],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99915725,0.000032825916,0.00018638655,0.00028206778,0.000032957603,0.0003085132],"domain_scores_gemma":[0.9996523,0.000119199685,0.00005065153,0.000121277066,0.0000019636568,0.000054607353],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015656486,0.0001618197,0.00030064274,0.00003643768,0.00020301725,0.000009385905,0.000058256424,0.000102265076,0.000009234649],"category_scores_gemma":[0.000008867418,0.00011719859,0.000021010075,0.00009066531,0.00038120226,0.000014777374,0.00018806815,0.00017398217,0.000052555828],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002961258,0.000065675624,0.008892233,0.00002085005,0.00004710159,0.000008510201,0.00051603274,9.523791e-8,0.98607516,0.00069632183,0.0019800835,0.001401829],"study_design_scores_gemma":[0.0028322963,0.00016328317,0.9151043,0.000025084271,0.00006448269,0.0000046444516,0.002348193,0.0000026129264,0.023985095,0.0009274847,0.054300323,0.0002421984],"about_ca_topic_score_codex":0.000045135435,"about_ca_topic_score_gemma":0.00013026189,"teacher_disagreement_score":0.9620901,"about_ca_system_score_codex":0.000025165638,"about_ca_system_score_gemma":0.0000055062897,"threshold_uncertainty_score":0.477922},"labels":[],"label_agreement":null},{"id":"W4321495254","doi":"10.1128/aem.01880-22","title":"Capacity of a Microbial Synbiotic To Rescue the <i>In Vitro</i> Metabolic Activity of the Gut Microbiome following Perturbation with Alcohol or Antibiotics","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"Wageningen University and Research","keywords":"Microbiome; Dysbiosis; Biology; Gut flora; Microbiology; Prebiotic; Faecalibacterium prausnitzii; Butyrate; Human microbiome; Antibiotics; Bifidobacterium; Synbiotics; Probiotic; Bacteria; Feces; Food science; Biochemistry; Lactobacillus; Bioinformatics; Fermentation; Genetics","score_opus":0.009299013830568947,"score_gpt":0.21113477785024337,"score_spread":0.20183576401967443,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4321495254","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986772,0.00009316682,0.000020665258,0.00028631912,0.00008919746,0.0005708927,0.0002325595,0.000005373119,0.000024657338],"genre_scores_gemma":[0.99892056,0.00012903752,0.00024256835,0.00040078268,0.000028933948,0.0000046906353,0.000120856894,0.000020637943,0.0001319257],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989365,0.000089468296,0.00024785503,0.00036352582,0.000040970648,0.00032173507],"domain_scores_gemma":[0.99947155,0.000029436167,0.00011016369,0.00034357485,0.0000048371285,0.000040451956],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020966172,0.00019428832,0.00030373875,0.0000637113,0.00011096959,0.0000061436886,0.00022814474,0.00017309579,0.0000039817483],"category_scores_gemma":[0.000008625861,0.000112752474,0.00008495619,0.00022433544,0.00036254275,0.000003404622,0.00026043743,0.00013170736,0.000005031768],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040522762,0.00008313029,0.0021669879,0.0000333204,0.00006428322,8.422002e-7,0.0002469474,0.00004131767,0.9965364,0.000016185271,0.00009929323,0.00030611252],"study_design_scores_gemma":[0.00078346377,0.00012570317,0.062100656,0.000018217146,0.000040822324,0.000033242402,0.00015332231,0.000004060228,0.93493676,0.0000039226725,0.0016608813,0.00013895408],"about_ca_topic_score_codex":0.00008070095,"about_ca_topic_score_gemma":0.00013250827,"teacher_disagreement_score":0.061599597,"about_ca_system_score_codex":0.000022187554,"about_ca_system_score_gemma":0.000042484342,"threshold_uncertainty_score":0.45979124},"labels":[],"label_agreement":null},{"id":"W4322617121","doi":"10.1128/aem.01923-22","title":"Application of a CRISPR Sequence-Based Method for a Large-Scale Assessment of Salmonella Serovars in Ontario Poultry Production Environments","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph","funders":"Ministry of Agriculture, Food and Rural Affairs; Ontario Ministry of Agriculture, Food and Rural Affairs","keywords":"Salmonella; Serotype; Isolation (microbiology); Biology; Outbreak; CRISPR; Biotechnology; Microbiology; Virology; Bacteria; Genetics; Gene","score_opus":0.0201695221318286,"score_gpt":0.2576153993737288,"score_spread":0.2374458772419002,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4322617121","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974306,0.000020939598,0.0015348549,0.00015344324,0.000045689234,0.0005843396,0.00017627754,0.00001220569,0.00004164042],"genre_scores_gemma":[0.9953432,0.00003794876,0.0029363022,0.00011842285,0.000020715494,0.00016407602,0.0013145431,0.00000224083,0.00006255019],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988084,0.00008036897,0.0003613424,0.00043726523,0.000041964424,0.00027068495],"domain_scores_gemma":[0.9995166,0.00017748825,0.00018463156,0.000082432656,0.0000024115707,0.000036413956],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046272133,0.0001445568,0.0003302271,0.000030428664,0.000051708077,0.0000019802296,0.00011091145,0.00017140938,0.00003850179],"category_scores_gemma":[0.000004046756,0.00007924872,0.00006244955,0.000107670916,0.000108574925,0.000020904792,0.000066200664,0.000100243335,0.000004524232],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041657935,0.0001265934,0.26791087,0.000010133971,0.000009608471,1.6821171e-7,0.00007596145,0.00014995725,0.72833306,0.00005250788,0.000020179328,0.003269301],"study_design_scores_gemma":[0.00054409396,0.00023591885,0.9210718,0.000008173725,0.000022883412,0.000006460971,0.00092566275,0.00073380605,0.07166633,0.00047010055,0.0041443952,0.00017034172],"about_ca_topic_score_codex":0.0013706592,"about_ca_topic_score_gemma":0.0020673578,"teacher_disagreement_score":0.65666676,"about_ca_system_score_codex":0.000083226754,"about_ca_system_score_gemma":0.000008649881,"threshold_uncertainty_score":0.3231669},"labels":[],"label_agreement":null},{"id":"W4322617222","doi":"10.1128/aem.02175-22","title":"Microbial Reduction of Antimony(V)-Bearing Ferrihydrite by Geobacter sulfurreducens","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Arsenic contamination and mitigation","field":"Environmental Science","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"European Research Council; Biotechnology and Biological Sciences Research Council; Engineering and Physical Sciences Research Council; Natural Environment Research Council; UK Catalysis Hub; European Commission; Sight Research UK; UK Research and Innovation","keywords":"Ferrihydrite; Antimony; Geobacter sulfurreducens; Arsenic; Geobacter; Chemistry; Goethite; Metalloid; Arsenate; Desulfovibrio; Redox; Arsenite; Environmental chemistry; Inorganic chemistry; Metal; Biofilm; Adsorption; Bacteria","score_opus":0.004193421885029423,"score_gpt":0.1766373249980038,"score_spread":0.1724439031129744,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4322617222","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99827206,0.000016308175,0.000039591396,0.00013654954,0.00010422191,0.00016061694,0.00008197139,0.000036420617,0.0011522355],"genre_scores_gemma":[0.99802196,0.0001093696,0.00009440723,0.000083888335,0.000020301559,0.000009852482,0.0006471024,0.000012302259,0.001000789],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99922705,0.000021296491,0.00019281045,0.00029829552,0.000041487507,0.00021904918],"domain_scores_gemma":[0.99975294,0.000014295354,0.000074994125,0.000109365195,6.518387e-7,0.000047751317],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009746313,0.000120031415,0.00013455114,0.000036852827,0.00009350666,0.0000060204816,0.00007343141,0.00009831534,0.00060852966],"category_scores_gemma":[0.0000015389884,0.00012307952,0.00003116649,0.00008554624,0.00036658376,0.00006129767,0.00017495126,0.00007031398,0.0002872094],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000075524617,0.000034420194,0.0047475803,0.0000034942227,0.000006783922,5.453888e-7,0.0003581721,0.000016431288,0.9840408,0.000040515017,0.003808412,0.006935282],"study_design_scores_gemma":[0.0011299861,0.00007219792,0.09728548,0.000009893297,0.000031165084,0.00009428445,0.0014008568,0.00010949438,0.82281715,0.00013974243,0.07650583,0.00040389175],"about_ca_topic_score_codex":0.00006215458,"about_ca_topic_score_gemma":0.000008490452,"teacher_disagreement_score":0.16122364,"about_ca_system_score_codex":0.000056764227,"about_ca_system_score_gemma":0.0000020102134,"threshold_uncertainty_score":0.6662973},"labels":[],"label_agreement":null},{"id":"W4324304881","doi":"10.1128/aem.00015-23","title":"Liquid-Liquid Phase Separation of the DEAD-Box Cyanobacterial RNA Helicase Redox (CrhR) into Dynamic Membraneless Organelles in <i>Synechocystis</i> sp. Strain PCC 6803","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"University of Alberta; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Cyanobacteria; Biogeochemical cycle; Organelle; Synechocystis; Phylum; Strain (injury); Protist; Photosynthesis; Oxygen evolution; Biology; Bacteria; Chemistry; Ecology; Botany; Biochemistry; Paleontology; Gene","score_opus":0.003700815636660131,"score_gpt":0.2244225889383996,"score_spread":0.22072177330173945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4324304881","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985802,0.000106834595,0.00018212154,0.00009098047,0.0001362501,0.00034149422,0.0004861956,0.000012705424,0.0000631712],"genre_scores_gemma":[0.99745214,0.00084393035,0.000055730296,0.00021289094,0.00004393917,0.000046366782,0.0012747839,0.00002605813,0.000044155717],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99888253,0.000051164305,0.00030144132,0.00043200198,0.000045921315,0.0002869496],"domain_scores_gemma":[0.99953455,0.00001610125,0.00012026412,0.0002700931,0.0000039525357,0.00005502302],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014689377,0.00021309528,0.00023572422,0.00004267012,0.00008773139,0.0000075876515,0.00021199246,0.00024856572,0.000036050624],"category_scores_gemma":[0.000009029919,0.00017745835,0.00005676718,0.00009436413,0.00025156784,0.000004493527,0.0002766591,0.00010374791,0.000012956523],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00059160823,0.00012586388,0.000005603653,0.000035056353,0.000023285738,0.0000041691187,0.00014694927,0.000029063964,0.99824125,0.00004784144,0.000016652335,0.00073264504],"study_design_scores_gemma":[0.0014451429,0.00049596303,0.000032449712,0.000014126131,0.000020399504,0.00005119263,0.0003531564,0.000020539754,0.99439394,0.00009265878,0.002886642,0.00019379407],"about_ca_topic_score_codex":0.000018794604,"about_ca_topic_score_gemma":0.00006229904,"teacher_disagreement_score":0.003847326,"about_ca_system_score_codex":0.000029103434,"about_ca_system_score_gemma":0.000035684807,"threshold_uncertainty_score":0.72365415},"labels":[],"label_agreement":null},{"id":"W4360599502","doi":"10.1128/aem.01919-22","title":"Identification of <i>lthB</i> , a Gene Encoding a Putative Glycosyltransferase Family 8 Protein Required for <i>Leptothrix</i> Sheath Formation","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Japan Science and Technology Agency; Japan Society for the Promotion of Science; Institute of Genetics; University of Tsukuba; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Mutant; Glycosyltransferase; Glycoconjugate; Cell wall; Biology; Cell biology; Gene; Cell envelope; Extracellular; Cell; Organelle; Biochemistry; Escherichia coli","score_opus":0.01093769070232349,"score_gpt":0.2090328068396008,"score_spread":0.19809511613727732,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4360599502","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99526256,0.000037364636,0.0028934102,0.00008042276,0.00005772129,0.0009279278,0.00043101417,0.000036343317,0.00027324783],"genre_scores_gemma":[0.99748546,0.0000799357,0.00036855717,0.0002204464,0.000014327253,0.0002138109,0.0015078136,0.000015756645,0.00009387908],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99887794,0.00008699684,0.00037452884,0.00031875563,0.000030852578,0.00031094736],"domain_scores_gemma":[0.99951124,0.000108613676,0.00014155984,0.00018821082,0.0000020761945,0.00004830976],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029689338,0.00017023746,0.0002475712,0.000050280287,0.00030204523,0.000007796665,0.00017406126,0.00016846064,0.00013132064],"category_scores_gemma":[0.000007696126,0.00017102783,0.000056902456,0.00012345264,0.00067397207,0.00011015669,0.00013563808,0.00011372599,0.00015100409],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010778374,0.000058018006,0.00021273506,0.000026595093,0.000015794742,5.8229335e-7,0.0012929213,0.00016027404,0.9963776,0.00023562383,0.0004393508,0.0010727542],"study_design_scores_gemma":[0.0010785362,0.0002537906,0.0031391643,0.0000069109933,0.00002667798,0.000016371048,0.0007848969,0.00022488437,0.9874745,0.0032905315,0.0034577816,0.0002459243],"about_ca_topic_score_codex":0.000016419657,"about_ca_topic_score_gemma":0.000014985547,"teacher_disagreement_score":0.008903037,"about_ca_system_score_codex":0.000052662243,"about_ca_system_score_gemma":0.0000066550765,"threshold_uncertainty_score":0.69743127},"labels":[],"label_agreement":null},{"id":"W4361190372","doi":"10.1128/aem.02004-22","title":"Microbiome and Physicochemical Features Associated with Differential Listeria monocytogenes Growth in Soft, Surface-Ripened Cheeses","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"British Columbia Centre for Disease Control; Natural Sciences and Engineering Research Council of Canada; University of British Columbia; Government of Canada; Canadian Dairy Commission","keywords":"Listeria monocytogenes; Food science; Streptococcus thermophilus; Biology; Pasteurization; Water activity; Raw milk; Lactococcus; 16S ribosomal RNA; Bacterial growth; Listeria; Microbiology; Food microbiology; Bacteria; Lactococcus lactis; Lactic acid; Lactobacillus; Water content; Fermentation","score_opus":0.015425277584178223,"score_gpt":0.22511044141517542,"score_spread":0.2096851638309972,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4361190372","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99887383,0.0004360142,0.000015866824,0.00006518403,0.00006293762,0.00024054792,0.00021781126,0.000026820979,0.000060972136],"genre_scores_gemma":[0.9961607,0.00048926455,0.00010840534,0.00015866915,0.000055701214,0.000021143958,0.0028288574,0.00003874829,0.00013854099],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987365,0.000044720346,0.00017988539,0.0006187083,0.0000351587,0.00038503646],"domain_scores_gemma":[0.9996506,0.000021691581,0.00007283848,0.00018237611,0.000003596119,0.00006888422],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00006912798,0.00028670358,0.00029594282,0.000036634316,0.00009368952,0.000023531544,0.0001430926,0.00028805263,0.00001812313],"category_scores_gemma":[0.000005115082,0.000260945,0.00003688906,0.000070172784,0.000499435,0.0000049284286,0.0005114374,0.00009924127,0.000010378837],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027167646,0.00007334333,0.011579625,0.000015484175,0.00009009382,0.0000052590935,0.000111401845,0.000009483917,0.9872452,0.000009319503,0.00017865135,0.00041048354],"study_design_scores_gemma":[0.002003355,0.00021797305,0.100390576,0.000014988622,0.00003301104,0.00007473595,0.00020980049,0.000008006164,0.8959544,0.000058095564,0.0006034208,0.00043165314],"about_ca_topic_score_codex":0.000021032847,"about_ca_topic_score_gemma":0.00004135543,"teacher_disagreement_score":0.091290794,"about_ca_system_score_codex":0.000027244365,"about_ca_system_score_gemma":0.000011069006,"threshold_uncertainty_score":0.99998426},"labels":[],"label_agreement":null},{"id":"W4361190642","doi":"10.1128/aem.00261-23","title":"Modeling Antibiotic Concentrations in the Vicinity of Antibiotic-Producing Bacteria at the Micron Scale","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Use and Resistance","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Western University","funders":"Canadian Institutes of Health Research; Agriculture and Agri-Food Canada; Government of Canada; Joint Programming Initiative on Antimicrobial Resistance","keywords":"Antibiotics; Bacteria; Antibiotic resistance; Microbiology; Biology; Microorganism; Biofilm; Genetics","score_opus":0.008559556270364442,"score_gpt":0.19665218347211993,"score_spread":0.18809262720175549,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4361190642","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99753994,0.0011617186,0.00002211935,0.0003712461,0.00017100826,0.00033362757,0.00010928456,0.00001832694,0.00027275115],"genre_scores_gemma":[0.9981753,0.0008044354,0.00002327004,0.00025355374,0.000019103447,0.0000021091375,0.00045962355,0.000011931831,0.00025066687],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988278,0.00013870808,0.00030352848,0.00035029903,0.000017942468,0.0003617255],"domain_scores_gemma":[0.999486,0.000116616866,0.00007981816,0.0003037873,0.0000027463411,0.000010990292],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033522886,0.00016764447,0.00025436323,0.000048363483,0.00032632297,0.000007656082,0.00021683575,0.0001827509,0.000082817314],"category_scores_gemma":[0.0000050260865,0.00010154189,0.000048653,0.00012800837,0.0008108823,0.000024015864,0.00017719863,0.00021173638,0.0002148329],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000044427263,0.000072370705,0.012570533,0.000022767766,0.000036076875,0.0000017143198,0.0015341645,0.00013883726,0.98487025,0.00010583005,0.00027556872,0.00032742473],"study_design_scores_gemma":[0.0014134586,0.00011076763,0.116398536,0.00006461425,0.00008398695,0.00015948694,0.009049569,0.00011002841,0.8700365,0.000070704824,0.0021856136,0.00031676242],"about_ca_topic_score_codex":0.00009783867,"about_ca_topic_score_gemma":0.00016897633,"teacher_disagreement_score":0.11483382,"about_ca_system_score_codex":0.000030327146,"about_ca_system_score_gemma":0.000011354868,"threshold_uncertainty_score":0.4140758},"labels":[],"label_agreement":null},{"id":"W4362522833","doi":"10.1128/aem.01306-22","title":"Adaptive Radioresistance of Enterohemorrhagic Escherichia coli O157:H7 Results in Genomic Loss of Shiga Toxin-Encoding Prophages","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Canadian Institutes of Health Research; Génome Québec; Natural Sciences and Engineering Research Council of Canada; Mitacs; McGill University","keywords":"Prophage; Shiga toxin; Escherichia coli; Biology; Lysogenic cycle; Microbiology; Genetics; Bacteriophage; Gene","score_opus":0.008657216621801304,"score_gpt":0.21262507219107252,"score_spread":0.20396785556927122,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4362522833","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977867,0.0011259979,0.000017098027,0.000045647812,0.000032682197,0.00030622064,0.00022453188,0.000006263479,0.0004548767],"genre_scores_gemma":[0.9969829,0.0020602995,0.0004680813,0.000043688557,0.000028024639,0.000043880944,0.0001826439,0.000016369038,0.00017414357],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988786,0.00005939316,0.00031569522,0.00039695535,0.000046317204,0.00030304812],"domain_scores_gemma":[0.9995938,0.00003785217,0.00012812017,0.00019493772,0.000005061514,0.00004020876],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020543375,0.00016575448,0.00028988704,0.000063630374,0.00004278654,0.000002878347,0.00016281329,0.00012951197,0.000005989191],"category_scores_gemma":[0.000016687776,0.00015702476,0.000044420354,0.00010973107,0.00057400536,0.0000027806157,0.00036397713,0.0001089235,0.000005813312],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00050469214,0.00007408317,0.006132191,0.000044265806,0.00005761545,0.000006561417,0.00021223444,0.000049112292,0.9924558,0.000043056963,0.00013848497,0.0002819023],"study_design_scores_gemma":[0.002057719,0.0005004761,0.09045157,0.000025314901,0.000015217736,0.00000846945,0.0011709488,0.000038902595,0.904166,0.000058664176,0.0012625252,0.00024421842],"about_ca_topic_score_codex":0.000016277556,"about_ca_topic_score_gemma":0.000024772004,"teacher_disagreement_score":0.08828982,"about_ca_system_score_codex":0.00003094677,"about_ca_system_score_gemma":0.000020234034,"threshold_uncertainty_score":0.64032835},"labels":[],"label_agreement":null},{"id":"W4366082758","doi":"10.1128/aem.00096-23","title":"Susceptibility of Campylobacter jejuni to Stressors in Agrifood Systems and Induction of a Viable-but-Nonculturable State","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"China Scholarship Council; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Viable but nonculturable; Campylobacter jejuni; Pasteurization; Microbiology; Food science; Bacteria; Biology; Viable count; Campylobacter; Propidium monoazide; Chemistry; Biochemistry; Real-time polymerase chain reaction; Fermentation","score_opus":0.011918912907014452,"score_gpt":0.18793616944552222,"score_spread":0.17601725653850778,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4366082758","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99908173,0.00011893737,4.955706e-7,0.00009160373,0.000060737213,0.00029365008,0.0002742022,0.000013658834,0.000064999185],"genre_scores_gemma":[0.99932367,0.00028606458,0.0000135459995,0.000045774028,0.000020080839,0.000019401625,0.00022712052,0.0000012367258,0.00006310456],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989497,0.00008863125,0.00032906487,0.00033987086,0.000031018146,0.00026170342],"domain_scores_gemma":[0.9996416,0.00012750184,0.000106338855,0.000057826517,0.0000040459213,0.00006267351],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025561242,0.00013404543,0.00034377511,0.00002808502,0.00003927731,0.0000048711427,0.00008421714,0.00013888972,0.00003935079],"category_scores_gemma":[0.000007137955,0.0000628134,0.000026213851,0.00016396433,0.0002001907,0.000029869923,0.00013131168,0.00008335163,0.000010850971],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052238935,0.000053493033,0.12040868,0.000017268992,0.000011041491,6.128411e-7,0.00016550542,0.00003951647,0.87594044,0.000031226635,0.00003832107,0.0032416584],"study_design_scores_gemma":[0.0003330921,0.00038522563,0.94076824,0.000017698583,0.000009094477,0.000017526145,0.0032282437,0.000009189917,0.053618908,0.00020270803,0.0012397157,0.00017035093],"about_ca_topic_score_codex":0.0005691361,"about_ca_topic_score_gemma":0.0003795639,"teacher_disagreement_score":0.82232153,"about_ca_system_score_codex":0.000021688962,"about_ca_system_score_gemma":0.0000018861438,"threshold_uncertainty_score":0.2561456},"labels":[],"label_agreement":null},{"id":"W4366083909","doi":"10.1128/aem.00105-23","title":"Serratia marcescens Colonization in a Neonatal Intensive Care Unit Has Multiple Sources, with Sink Drains as a Major Reservoir","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Polytechnique Montréal; Centre Hospitalier Universitaire Sainte-Justine; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Government of Canada; Polytechnique Montréal; Centre hospitalier universitaire Sainte-Justine; Aix-Marseille Université; California HIV/AIDS Research Program","keywords":"Serratia marcescens; Sink (geography); Colonization; Outbreak; Neonatal intensive care unit; Intensive care; Biology; Microbiology; Medicine; Intensive care medicine; Pediatrics; Virology; Geography; Escherichia coli","score_opus":0.011849357918298125,"score_gpt":0.2146590873349247,"score_spread":0.20280972941662656,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4366083909","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99833053,0.00016041074,0.000019374957,0.0005891845,0.00003631852,0.00043851289,0.00014418815,0.0000539037,0.00022757657],"genre_scores_gemma":[0.9963198,0.00006945772,0.00005886424,0.00077283214,0.000025990625,0.00005099378,0.0019916352,0.000022547114,0.0006879219],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992837,0.00001909786,0.0001384234,0.0002829111,0.00003686004,0.00023901118],"domain_scores_gemma":[0.99973035,0.000034043012,0.000039906707,0.00011280882,0.000011122657,0.00007178393],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003085834,0.00014989285,0.00019903325,0.000113286085,0.0001282495,0.000011979783,0.00004316401,0.000113823284,0.00007935641],"category_scores_gemma":[0.0000071595423,0.00012162229,0.000021643882,0.00013928462,0.00032436787,0.000030298397,0.00012323445,0.00017391916,0.00015943697],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006038283,0.000042811866,0.15464436,0.00008204096,0.000068558395,0.00021543061,0.0068912376,0.000067272376,0.836267,0.00008363089,0.00020089962,0.00083291373],"study_design_scores_gemma":[0.018388929,0.0027364353,0.49650535,0.0003182468,0.00025018727,0.004796836,0.12727955,0.0002565628,0.15764613,0.00033597866,0.19034941,0.0011363843],"about_ca_topic_score_codex":0.00041811168,"about_ca_topic_score_gemma":0.00088894914,"teacher_disagreement_score":0.6786209,"about_ca_system_score_codex":0.000060845163,"about_ca_system_score_gemma":0.000022312863,"threshold_uncertainty_score":0.4959613},"labels":[],"label_agreement":null},{"id":"W4366236795","doi":"10.1128/aem.02092-22","title":"Expression of <i>Microcystis</i> Biosynthetic Gene Clusters in Natural Populations Suggests Temporally Dynamic Synthesis of Novel and Known Secondary Metabolites in Western Lake Erie","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Aquatic Ecosystems and Phytoplankton Dynamics","field":"Environmental Science","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of Environmental Health Sciences; National Oceanic and Atmospheric Administration; National Institutes of Health; National Science Foundation","keywords":"Microcystis; Microcystin; Biology; Cyanobacteria; Secondary metabolite; Microcystis aeruginosa; Secondary metabolism; Ecosystem; Algal bloom; Ecology; Gene; Biosynthesis; Biochemistry; Phytoplankton; Genetics; Bacteria; Nutrient","score_opus":0.005806524108179491,"score_gpt":0.1985157802061664,"score_spread":0.1927092560979869,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4366236795","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985466,0.00022144361,0.000028422075,0.000032221764,0.00005195373,0.0002595872,0.00076649047,0.000008787264,0.000084513376],"genre_scores_gemma":[0.9985733,0.00016095923,0.0008379368,0.000027954147,0.0000035879061,0.0000229145,0.00032189916,0.000014897835,0.000036549845],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99893624,0.000040481835,0.0004214813,0.00032776175,0.00004831827,0.00022573875],"domain_scores_gemma":[0.99954903,0.00010669272,0.00015566024,0.0001482981,6.318856e-7,0.000039657185],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017234834,0.00017077877,0.00036084375,0.000103067345,0.000036706606,0.0000043228347,0.00010849591,0.00012093211,0.0000779464],"category_scores_gemma":[0.000004890374,0.00015556665,0.00002859531,0.00012636211,0.0003287592,0.000057856396,0.0002598478,0.000113299,0.000009723741],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002246125,0.000067749075,0.15839787,0.00003793647,0.000005026929,0.000001940221,0.00023021318,0.00031432576,0.83968276,0.000013021002,0.000008102401,0.0012186123],"study_design_scores_gemma":[0.0016397309,0.000065431406,0.91146815,0.00013456201,0.00003194229,0.00008669708,0.0007173655,0.0028183784,0.0814253,0.00013113518,0.001015894,0.00046540643],"about_ca_topic_score_codex":0.000091249836,"about_ca_topic_score_gemma":0.004546741,"teacher_disagreement_score":0.75825745,"about_ca_system_score_codex":0.000040277533,"about_ca_system_score_gemma":0.000004906901,"threshold_uncertainty_score":0.6343824},"labels":[],"label_agreement":null},{"id":"W4366351064","doi":"10.1128/aem.00421-23","title":"Longitudinal Study of <i>Lactococcus</i> Phages in a Canadian Cheese Factory","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Agropur cooperative; Université de Montréal; Université Laval","funders":"Fonds de recherche du Québec – Nature et technologies; Novalait; Natural Sciences and Engineering Research Council of Canada; Government of Canada; Canadian Dairy Commission","keywords":"Biology; Multilocus sequence typing; Lactococcus lactis; Virulence; Microbiology; Lactococcus; Bacteriophage; Siphoviridae; Typing; Phage typing; Bacteria; Plasmid; Genetics; Genotype; Escherichia coli; DNA; Gene","score_opus":0.011004383902296948,"score_gpt":0.22181260916051487,"score_spread":0.21080822525821794,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4366351064","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980618,0.000012693526,6.0444927e-7,0.00003396377,0.00007454186,0.00036379753,0.00008918576,0.000014732852,0.0013487247],"genre_scores_gemma":[0.99950683,0.00004352306,0.00001692584,0.00009129016,0.000010603936,0.000038868468,0.00008736731,0.0000123838445,0.00019222125],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990523,0.000026500958,0.00020198963,0.00032332726,0.000027992073,0.00036791115],"domain_scores_gemma":[0.99968183,0.000017243981,0.000049018727,0.00014522909,3.8735715e-7,0.00010627207],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009300896,0.00014240958,0.00018630007,0.00009392484,0.00007825726,0.000006901504,0.000118124466,0.00008175598,0.0013481494],"category_scores_gemma":[0.0000016464778,0.00013635331,0.000024675499,0.00013795434,0.00020982046,0.00005677784,0.00018381227,0.00013320231,0.00039120263],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011271481,0.00014783612,0.1822051,0.000002423825,0.000010284687,0.000011945612,0.0006767387,0.000028934139,0.8158658,0.0000036004367,0.00030755906,0.0007284867],"study_design_scores_gemma":[0.0005524898,0.00011002106,0.9847753,0.0000027196354,0.000009174123,0.000014134106,0.0014294867,0.0000062400245,0.005869684,0.000010643038,0.0070775147,0.00014258783],"about_ca_topic_score_codex":0.07337331,"about_ca_topic_score_gemma":0.14876325,"teacher_disagreement_score":0.8099961,"about_ca_system_score_codex":0.00014881913,"about_ca_system_score_gemma":0.000006516684,"threshold_uncertainty_score":0.99956477},"labels":[],"label_agreement":null},{"id":"W4367047720","doi":"10.1128/aem.00025-23","title":"“ <i>Candidatus</i> Nealsonbacteria” Are Likely Biomass Recycling Ectosymbionts of Methanogenic Archaea in a Stable Benzene-Degrading Enrichment Culture","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of General Medical Sciences; National Institutes of Health; Innotech Alberta; Government of Ontario; University of Alberta; University of Waterloo; Mitacs; Genome Canada; Ontario Genomics; Alberta Innovates; Life Sciences Research Foundation","keywords":"Archaea; Candidatus; Phylum; Biology; Enrichment culture; Biomass (ecology); Benzene; Bacteria; Microbiology; Metagenomics; Microorganism; Genetics; Gene; Chemistry; Ecology; 16S ribosomal RNA; Organic chemistry","score_opus":0.00813035714799803,"score_gpt":0.20090576949471578,"score_spread":0.19277541234671774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4367047720","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99857545,0.00016142242,0.000009086903,0.00008143065,0.000114825714,0.00031354633,0.00016810255,0.000033265704,0.00054287456],"genre_scores_gemma":[0.9980198,0.00062410644,0.0002299382,0.00026566823,0.000018524337,0.000037522273,0.00062743836,0.000020480702,0.00015652168],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99834806,0.00019127877,0.00037820867,0.0004876847,0.000045789115,0.00054898654],"domain_scores_gemma":[0.99933726,0.000114597846,0.00018300283,0.00028172723,0.0000010400375,0.00008235075],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034688853,0.00025742792,0.0004472198,0.00010569149,0.00017960981,0.0000066290454,0.00028940884,0.00028519318,0.0008831627],"category_scores_gemma":[0.00000671052,0.00024327896,0.00006300901,0.000266919,0.0004931804,0.00006125958,0.0007426911,0.00029144503,0.0002438363],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007475197,0.000114032264,0.061273538,0.000018627812,0.000030427684,0.000005633579,0.0008474904,0.00005225595,0.93614024,0.000027082486,0.0008285548,0.0005873504],"study_design_scores_gemma":[0.0030712066,0.0004893879,0.41633803,0.000061596824,0.00007242302,0.00009848451,0.002464678,0.00006708035,0.53483963,0.0024063606,0.039057642,0.0010334769],"about_ca_topic_score_codex":0.00032000474,"about_ca_topic_score_gemma":0.0005770989,"teacher_disagreement_score":0.4013006,"about_ca_system_score_codex":0.00013152504,"about_ca_system_score_gemma":0.0000060406505,"threshold_uncertainty_score":0.9920628},"labels":[],"label_agreement":null},{"id":"W4367048047","doi":"10.1128/aem.00271-23","title":"Cecal Microbiota Development and Physiological Responses of Broilers Following Early Life Microbial Inoculation Using Different Delivery Methods and Microbial Sources","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada; Alberta Innovates; Alberta Agriculture and Forestry","keywords":"Biology; Microbiology; Cecum; Bacteroidetes; Lactobacillus; Inoculation; Broiler; Caecum; Bacteroides; Gut flora; Microbial population biology; Bacteria; Food science; Ecology; Immunology; 16S ribosomal RNA","score_opus":0.02385250345699548,"score_gpt":0.265648284421055,"score_spread":0.24179578096405951,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4367048047","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984137,0.0009301099,0.00014908581,0.000031741,0.00009005997,0.00027712446,0.00008666843,0.000016506077,0.0000050086987],"genre_scores_gemma":[0.99427205,0.0004447279,0.004441711,0.00022124022,0.00006170916,0.000008166219,0.00048168263,0.00002779297,0.00004092131],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983733,0.00016414873,0.00039322468,0.00062816835,0.00003159291,0.0004095226],"domain_scores_gemma":[0.99952996,0.00004846998,0.00013768462,0.00015335396,0.0000047815192,0.00012573689],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00023315425,0.00030752135,0.00040901147,0.000108202315,0.00024435704,0.000020453348,0.0000985556,0.00035119205,0.0000075868447],"category_scores_gemma":[0.000010139052,0.00027960056,0.0000732688,0.00006076972,0.000459518,0.0000064471205,0.00048322484,0.00013713358,0.0000036058861],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022131299,0.000052763415,0.009077583,0.00004554186,0.000105952,0.0000017768181,0.00036935284,0.000009222103,0.98840934,0.000007708161,0.00006720154,0.0016322363],"study_design_scores_gemma":[0.0013131257,0.00021027443,0.21942174,0.000025196536,0.00005749029,0.00006853955,0.00044578995,0.000014848671,0.775713,0.000010552076,0.0023283698,0.00039100775],"about_ca_topic_score_codex":0.000027039236,"about_ca_topic_score_gemma":0.0000068134595,"teacher_disagreement_score":0.2126963,"about_ca_system_score_codex":0.000028383856,"about_ca_system_score_gemma":0.00003701765,"threshold_uncertainty_score":0.9999656},"labels":[],"label_agreement":null},{"id":"W4375860698","doi":"10.1128/aem.00043-23","title":"Protective Effect of Select Bacterial Species Representative of Fresh Produce on Human Norovirus Surrogates Exposed to Disinfecting Pulsed Light","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Université Laval","keywords":"Microbiology; Murine norovirus; Pantoea agglomerans; Biofilm; Norovirus; Biology; Pseudomonas fluorescens; Bacteria; Bacillus cereus; Virus; Virology","score_opus":0.025383500793851176,"score_gpt":0.2737089352210496,"score_spread":0.24832543442719843,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4375860698","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984737,0.000021691472,0.000008959734,0.000026165751,0.00010033183,0.00085245125,0.00021039874,0.000012915941,0.00029339833],"genre_scores_gemma":[0.99904436,0.000015833088,0.000030961197,0.00002597708,0.000105813095,0.00009504641,0.0006068211,0.000025902313,0.00004930268],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99879485,0.00013342139,0.00026417733,0.0005242725,0.000043150147,0.00024012604],"domain_scores_gemma":[0.99947107,0.000055759196,0.000141812,0.00028259138,0.000005847239,0.000042915788],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020022807,0.00021493595,0.00032535032,0.0000634615,0.00008324488,0.0000055010946,0.00013302332,0.00013979424,0.000026365746],"category_scores_gemma":[0.000033577155,0.0001866581,0.00006301815,0.00008764958,0.00022316442,0.000002860689,0.0003619395,0.00007053227,0.000011044],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00093984633,0.000057299705,0.0048929933,0.00003832411,0.00010651566,0.0000010397789,0.000340931,0.000029367646,0.99316514,0.000007647623,0.00012434713,0.00029658026],"study_design_scores_gemma":[0.0009541158,0.0022132867,0.011332473,0.000011564054,0.000020473053,0.0000066526245,0.00019582777,3.1976796e-7,0.9846448,0.0000119939705,0.00043908748,0.0001694592],"about_ca_topic_score_codex":0.0000123764585,"about_ca_topic_score_gemma":0.00001750595,"teacher_disagreement_score":0.008520361,"about_ca_system_score_codex":0.00002617449,"about_ca_system_score_gemma":0.000007097115,"threshold_uncertainty_score":0.7611697},"labels":[],"label_agreement":null},{"id":"W4380423302","doi":"10.1128/aem.00456-23","title":"Socializing at the Air-Liquid Interface: a Functional Genomic Analysis on Biofilm-Related Genes during Pellicle Formation by Escherichia coli and Its Interaction with Aeromonas australiensis","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; University of Alberta","funders":"Mitacs; Canada Research Chairs; Results Driven Agriculture Research","keywords":"Biofilm; Bacteria; Interface (matter); Microbiology; Solid surface; Escherichia coli; Biology; Aeromonas; Chemistry; Gene; Genetics; Chemical physics; Biochemistry","score_opus":0.006158281599125422,"score_gpt":0.19036258912757165,"score_spread":0.18420430752844622,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4380423302","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992426,0.00022932139,0.0000078693465,0.00016986257,0.000052737796,0.00015124888,0.00009650768,0.00001389215,0.000035979076],"genre_scores_gemma":[0.9976357,0.0004610439,0.0000117537065,0.00012381599,0.000035021483,0.000010889135,0.0014439832,0.00001463864,0.00026314642],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99927527,0.000035263172,0.00015158836,0.00031195505,0.000027808253,0.00019811786],"domain_scores_gemma":[0.9997697,0.0000104390965,0.00008898226,0.000091304835,0.0000029194277,0.000036679357],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000064075764,0.00015313842,0.00013569208,0.000042051557,0.00027212076,0.000014781653,0.000036419293,0.00014038706,0.00003610807],"category_scores_gemma":[9.166356e-7,0.0001170017,0.000040249462,0.0000856437,0.00013226755,0.000006775751,0.00013001885,0.00007635353,0.000030534797],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037304516,0.000016946033,0.00018323914,0.0000051909747,0.00021632932,5.501782e-7,0.00009453896,0.0003428904,0.99840605,0.000005709084,0.00013983845,0.00021565142],"study_design_scores_gemma":[0.00045247853,0.00018705789,0.0075577786,0.0000032092578,0.000098493576,0.000033965556,0.00036244083,0.00006504021,0.988465,6.8245686e-7,0.002618017,0.00015579649],"about_ca_topic_score_codex":0.0000140041075,"about_ca_topic_score_gemma":0.000022018748,"teacher_disagreement_score":0.009941031,"about_ca_system_score_codex":0.00004063448,"about_ca_system_score_gemma":0.0000033602892,"threshold_uncertainty_score":0.47711906},"labels":[],"label_agreement":null},{"id":"W4382501584","doi":"10.1128/aem.00695-23","title":"An Integrated Paper Microfluidic Device Based on Isothermal Amplification for Simple Sample-to-Answer Detection of <i>Campylobacter jejuni</i>","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biosensors and Analytical Detection","field":"Engineering","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University; McGill University; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Genome British Columbia; Genome Canada","keywords":"Campylobacter jejuni; Microfluidics; Loop-mediated isothermal amplification; Campylobacter; Computer science; Identification (biology); Simple (philosophy); Sample (material); Biochemical engineering; Biological system; Computational biology; Nanotechnology; Biology; Materials science; Bacteria; Engineering; Chromatography; Chemistry; Ecology; Genetics","score_opus":0.006140218726852826,"score_gpt":0.1919846900378843,"score_spread":0.18584447131103146,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4382501584","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9741148,0.00003143674,0.02483384,0.000029369952,0.000088790934,0.00031619973,0.0004219437,0.00010968147,0.000053987707],"genre_scores_gemma":[0.9982646,0.000050841514,0.0003320135,0.0005271765,0.00003697073,0.00005042149,0.0007000405,0.000028665037,0.000009281345],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99937695,0.000014733409,0.00016862493,0.00022822687,0.000022777402,0.00018866782],"domain_scores_gemma":[0.9997186,0.000060725535,0.000022335616,0.00013724538,0.000003651723,0.000057410987],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006578818,0.00013925576,0.00014694597,0.00009094231,0.000054063148,0.00000832046,0.00005572242,0.00013758884,0.000047383004],"category_scores_gemma":[0.000002946265,0.00012822282,0.000037224174,0.00011090787,0.00005646782,0.000026440252,0.000010331084,0.000073806696,0.000034045337],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000060341543,0.00004732678,0.000083388084,0.000021099167,0.0000123564905,6.7853804e-8,0.000020185105,0.0008926088,0.9717835,0.000033504286,0.00016634405,0.026879273],"study_design_scores_gemma":[0.0005148096,0.00032117436,0.0044610263,0.000008906591,0.000027863629,0.0000023833736,0.00016875929,0.00792978,0.89342624,0.00011735912,0.09277703,0.0002446885],"about_ca_topic_score_codex":0.000017756063,"about_ca_topic_score_gemma":0.000007827751,"teacher_disagreement_score":0.09261068,"about_ca_system_score_codex":0.000039355175,"about_ca_system_score_gemma":0.000003034661,"threshold_uncertainty_score":0.52287745},"labels":[],"label_agreement":null},{"id":"W4383186738","doi":"10.1128/aem.00583-23","title":"The Tomato Brown Rugose Fruit Virus Movement Protein Gene Is a Novel Microbial Source Tracking Marker","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of General Medical Sciences; National Institute of Allergy and Infectious Diseases; Stanford Maternal and Child Health Research Institute; Centers for Disease Control and Prevention; National Institutes of Health; BCCDC Foundation for Public Health","keywords":"Biology; Feces; Genome; Source tracking; Fecal coliform; Contamination; Genetic marker; Marker gene; Gene; Virology; Microbiology; Genetics; Ecology","score_opus":0.007268143290826089,"score_gpt":0.191388910505482,"score_spread":0.18412076721465592,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4383186738","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976856,0.000056398956,0.00012505561,0.0005446633,0.00015619723,0.0005972248,0.00025550547,0.000070277805,0.0005090519],"genre_scores_gemma":[0.9920287,0.00016702212,0.000327827,0.0018855078,0.00006991793,0.00012168061,0.00016293037,0.000043966553,0.0051924577],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984066,0.00003182787,0.00032582227,0.00057043525,0.00006484749,0.0006004872],"domain_scores_gemma":[0.99942714,0.000047589696,0.00011746414,0.00030483404,0.0000011660769,0.000101803475],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00018128683,0.00029017447,0.0002061838,0.00003410765,0.00062712305,0.00008053815,0.00027015974,0.0001546207,0.0016764554],"category_scores_gemma":[0.0000027157726,0.00023036341,0.00009204032,0.00011812022,0.0005342184,0.000085928026,0.0006734515,0.00022536385,0.0016835856],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046952842,0.00009864,0.00021847793,0.0000039545516,0.000041361964,0.0000035206108,0.00045103146,0.000027598202,0.98704803,0.000013037712,0.0038112262,0.008236174],"study_design_scores_gemma":[0.0008196607,0.000064832035,0.01950446,0.000010475641,0.000028721643,0.0001239582,0.00053528155,0.00009920882,0.67489135,0.000071541435,0.3034175,0.00043297492],"about_ca_topic_score_codex":0.00021599428,"about_ca_topic_score_gemma":0.00010595981,"teacher_disagreement_score":0.31215665,"about_ca_system_score_codex":0.00015349199,"about_ca_system_score_gemma":0.0000048314078,"threshold_uncertainty_score":0.99923617},"labels":[],"label_agreement":null},{"id":"W4386438180","doi":"10.1128/aem.00666-23","title":"Development of heat-shock resistance in <i>Legionella pneumophila</i> modeled by experimental evolution","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; McGill University","funders":"Government of Canada","keywords":"Legionella pneumophila; Biology; Heat shock protein; Experimental evolution; Microbiology; Adaptation (eye); HSP60; Genetic Fitness; Heat shock; Chaperone (clinical); Pasteurization; Legionella; Bacteria; Genetics; Hsp70; Gene; Food science","score_opus":0.006576085521796318,"score_gpt":0.20800545719402952,"score_spread":0.2014293716722332,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386438180","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99809766,0.0011253717,0.00006394996,0.000049148955,0.000026036872,0.00017416982,0.00004230646,0.0000074902605,0.0004138917],"genre_scores_gemma":[0.9982335,0.00027437773,0.00026154102,0.00006358634,0.000021078287,0.000044584838,0.00078546227,0.000014998285,0.00030086658],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999093,0.000020864496,0.00021510579,0.00035175568,0.00004647703,0.00027281698],"domain_scores_gemma":[0.999779,0.000006389873,0.00003119882,0.00013477023,0.0000018915594,0.000046764555],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009631273,0.00013314164,0.00014949647,0.000052018175,0.0000678247,0.000003442811,0.00010198528,0.00013863857,0.0000043094924],"category_scores_gemma":[0.0000010620612,0.0001320565,0.000025567766,0.00007062339,0.00018934914,0.0000024734418,0.00018266724,0.00006839204,0.000019042373],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010157664,0.00009188952,0.0009864726,0.000010670196,0.000013802642,0.0000013087648,0.00015962138,0.000026685007,0.99722433,0.000063717904,0.0012216273,0.00009831022],"study_design_scores_gemma":[0.00085578277,0.000052350024,0.0014597868,0.0000066564376,0.0000022002985,0.000006417094,0.0005791629,0.00003138782,0.9810082,0.000046860656,0.01577565,0.00017557418],"about_ca_topic_score_codex":0.0000074634077,"about_ca_topic_score_gemma":0.000016143493,"teacher_disagreement_score":0.016216148,"about_ca_system_score_codex":0.000045941357,"about_ca_system_score_gemma":0.000021659922,"threshold_uncertainty_score":0.5385108},"labels":[],"label_agreement":null},{"id":"W4386887058","doi":"10.1128/aem.01047-23","title":"Metagenome meta-analysis reveals an increase in the abundance of some multidrug efflux pumps and mobile genetic elements in chemically polluted environments","year":2023,"lang":"en","type":"review","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Western University","funders":"Agriculture and Agri-Food Canada; Government of Canada","keywords":"Efflux; Metagenomics; Resistome; Pollution; Biology; Relative species abundance; Pollutant; Abundance (ecology); Mobile genetic elements; Antibiotic resistance; Ecology; Antibiotics; Environmental chemistry; Gene; Genetics; Chemistry; Genome","score_opus":0.022403480430916688,"score_gpt":0.27050275213584063,"score_spread":0.24809927170492393,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386887058","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.50270355,0.49549735,0.0000053179965,0.000002820842,0.000011103109,0.0008819702,0.0008889407,0.0000025134905,0.0000064197993],"genre_scores_gemma":[0.24590738,0.7504375,0.00032777566,0.00007818818,0.000026129028,0.00021157123,0.0028497933,0.00004584343,0.000115845505],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9973129,0.00030078975,0.00097423134,0.0009447722,0.00007934444,0.00038797566],"domain_scores_gemma":[0.9987505,0.00007489224,0.00045036743,0.00065112347,0.0000012433826,0.000071845156],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004529083,0.0005070143,0.0019443892,0.00017657354,0.000043027467,0.00001884811,0.0004467834,0.00043033116,0.000042478383],"category_scores_gemma":[0.000008286285,0.0003712202,0.0003690587,0.00017382417,0.00047854063,0.0000073312426,0.00037891805,0.00021587605,0.000012134627],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000737053,0.00063412375,0.003678879,0.0013364315,0.023525296,0.000023460732,0.00021746662,0.000034296725,0.955619,0.000013589755,0.000018267841,0.014825534],"study_design_scores_gemma":[0.0071984665,0.001602733,0.07909328,0.00055730547,0.22494878,0.00038888125,0.0018262317,0.000035482844,0.011132465,0.00039055597,0.6662269,0.006598893],"about_ca_topic_score_codex":0.000034961082,"about_ca_topic_score_gemma":0.000025750625,"teacher_disagreement_score":0.9444865,"about_ca_system_score_codex":0.00004485353,"about_ca_system_score_gemma":0.000016111497,"threshold_uncertainty_score":0.999874},"labels":[],"label_agreement":null},{"id":"W4386887075","doi":"10.1128/aem.01034-23","title":"Comparative genomic analysis of <i>Periweissella</i> and the characterization of novel motile species","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"China Scholarship Council; Vrije Universiteit Brussel; Natural Sciences and Engineering Research Council of Canada; Universiteit Gent; Canada Research Chairs; Government of Canada","keywords":"Biology; Phylogenetic tree; Genome; Phylogenetics; Genetics; Genus; Comparative genomics; Evolutionary biology; Gene; Genomics; Zoology","score_opus":0.012753926979852942,"score_gpt":0.1745645305242498,"score_spread":0.16181060354439686,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386887075","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99907035,0.000047267677,0.0000057770385,0.000091077716,0.000012488035,0.00011896793,0.0004943433,0.0000049191117,0.00015481454],"genre_scores_gemma":[0.99861103,0.00041206143,0.000010027091,0.00005400041,0.000009345394,0.0000038513544,0.00085293944,4.2212108e-7,0.00004631535],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99961174,0.000015212194,0.00013944402,0.00013015483,0.000017318242,0.000086121545],"domain_scores_gemma":[0.99981356,0.000058007856,0.00008292455,0.000028964381,0.0000016682637,0.00001487934],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007568605,0.0000672708,0.00023356786,0.000016571472,0.00005700641,0.0000043191344,0.000060287937,0.00004307824,0.00004634022],"category_scores_gemma":[4.61223e-7,0.000025107433,0.00003677646,0.00015606207,0.00042314825,0.000009210191,0.000093104376,0.000030614134,0.0000018154071],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003114165,0.000033842498,0.0025254663,0.00000203837,0.00011666311,3.6607737e-8,0.0002636072,0.000009738337,0.9960368,0.0005992707,0.0000038765456,0.00037751163],"study_design_scores_gemma":[0.00049627264,0.00008648229,0.8639769,0.0000022470458,0.00016384186,0.0000021744065,0.0011179341,0.0005054364,0.13207224,0.000035986464,0.00144525,0.00009523124],"about_ca_topic_score_codex":0.000010107397,"about_ca_topic_score_gemma":0.0000072948346,"teacher_disagreement_score":0.86396456,"about_ca_system_score_codex":0.0000037274633,"about_ca_system_score_gemma":5.7557696e-7,"threshold_uncertainty_score":0.15591073},"labels":[],"label_agreement":null},{"id":"W4386910132","doi":"10.1128/aem.00713-23","title":"Biofilm formation by heat-resistant dairy bacteria: multispecies biofilm model under static and dynamic conditions","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Agriculture and Agri-Food Canada; Novalait; Université de Montréal; Dairy Farmers of Ontario","keywords":"Biofilm; Food spoilage; Bacillus licheniformis; Microbiology; Bacteria; Food science; Biology; Pseudomonas aeruginosa; Enterococcus faecalis; Dairy industry; Bacillus subtilis; Staphylococcus aureus","score_opus":0.008538196211602468,"score_gpt":0.1882814965137904,"score_spread":0.17974330030218794,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386910132","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963037,0.0001360004,0.00003108139,0.00063509116,0.000031745865,0.00020743508,0.0025224988,0.00004792485,0.00008453136],"genre_scores_gemma":[0.99288625,0.00073886814,0.0000838615,0.0003512873,0.000009788457,0.000022181974,0.0057583475,0.0000020660666,0.00014736548],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999247,0.000018677305,0.00017077023,0.00026823083,0.000029402103,0.00026590936],"domain_scores_gemma":[0.9998015,0.00005120745,0.000038423277,0.000041734987,0.0000015522146,0.00006556598],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000054294436,0.00015092734,0.00014867613,0.000017803475,0.00024938927,0.000030251776,0.0000684965,0.0001209533,0.0000867749],"category_scores_gemma":[9.575208e-7,0.00007480607,0.000024456736,0.0000670294,0.0002539159,0.000060802526,0.000119998585,0.000076470365,0.000037530095],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015331112,0.000041523985,0.00005374476,0.0000062798235,0.0000142313775,5.396909e-7,0.000060264185,0.000024360068,0.99767673,0.00027098562,0.0006073546,0.0012286563],"study_design_scores_gemma":[0.0066400673,0.0027847271,0.43872136,0.00011492482,0.00033374742,0.00030651942,0.024484372,0.06485467,0.39811945,0.016552981,0.042924486,0.0041627036],"about_ca_topic_score_codex":0.000016660451,"about_ca_topic_score_gemma":0.00003144096,"teacher_disagreement_score":0.5995573,"about_ca_system_score_codex":0.00003346109,"about_ca_system_score_gemma":0.0000016246862,"threshold_uncertainty_score":0.3050503},"labels":[],"label_agreement":null},{"id":"W4387661494","doi":"10.1128/aem.01141-23","title":"Unlocking the secrets of peptide transport in wine yeast: insights into oligopeptide transporter functions and nitrogen source preferences","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fermentation and Sensory Analysis","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lallemand (Canada)","funders":"Eesti Teadusagentuur","keywords":"Oligopeptide; Peptide; Tripeptide; Saccharomyces cerevisiae; Biochemistry; Transporter; Amino acid; Yeast; Hydrolysate; Chemistry; Biology; Gene","score_opus":0.008830043682628115,"score_gpt":0.1703077918675137,"score_spread":0.1614777481848856,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387661494","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99929297,0.00009838633,0.0000030959047,0.00022486424,0.000011354472,0.00011714544,0.000034124696,0.0000137773,0.00020425674],"genre_scores_gemma":[0.99903387,0.00023761086,0.000007793255,0.00012253696,0.000022135548,0.000013194181,0.00040375165,0.000001030392,0.00015808907],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994149,0.000031310617,0.00018153714,0.0002091837,0.000032957894,0.00013007778],"domain_scores_gemma":[0.99984515,0.000045060846,0.000043168307,0.00003287194,0.0000013696723,0.00003240844],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006676305,0.000098870856,0.00014837098,0.000021973983,0.0001189482,0.0000047647422,0.00006567406,0.00006173171,0.0001552696],"category_scores_gemma":[5.8935154e-7,0.000039978233,0.000034682398,0.00013590927,0.00022315794,0.000027067283,0.000022475497,0.00006999537,0.000012132994],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002009696,0.000023521321,0.057378728,0.0000040544646,0.00002127802,0.0000011001612,0.0011639897,0.00004509507,0.93532217,0.000020016501,0.000018032202,0.0059819506],"study_design_scores_gemma":[0.00045027176,0.00013048558,0.9431848,0.000012531419,0.000061709354,0.000013340801,0.018817687,0.00007164662,0.025520537,0.0007720568,0.010732941,0.0002320099],"about_ca_topic_score_codex":0.0001488641,"about_ca_topic_score_gemma":0.00072849565,"teacher_disagreement_score":0.9098016,"about_ca_system_score_codex":0.000005882229,"about_ca_system_score_gemma":0.0000013257123,"threshold_uncertainty_score":0.17000933},"labels":[],"label_agreement":null},{"id":"W4388014230","doi":"10.1128/aem.00977-23","title":"Tracking the fecal mycobiome through the lifespan of production pigs and a comparison to the feral pig","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada; Swine Innovation Porc","keywords":"Biology; Feces; Host (biology); Microbiology; Ecology","score_opus":0.013165953428361648,"score_gpt":0.24312615613671004,"score_spread":0.22996020270834838,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388014230","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99547386,0.0006209268,0.000042624124,0.00318514,0.00012939818,0.00042471528,0.000050659695,0.0000072299795,0.00006543025],"genre_scores_gemma":[0.99789155,0.0004508194,0.000044632157,0.0010723403,0.00016304279,0.00003084533,0.00019046145,0.0000115194325,0.0001448182],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992114,0.00006352284,0.00017425008,0.00029128254,0.000027136279,0.000232434],"domain_scores_gemma":[0.99965,0.000023973354,0.00006267254,0.00023340296,0.0000027714493,0.000027154065],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020137693,0.00012692349,0.00013657847,0.000014441262,0.00029210342,0.00001253045,0.0001456551,0.000097758246,0.000005696555],"category_scores_gemma":[0.0000033965837,0.000066830784,0.000030900945,0.00006802031,0.000407492,0.0000021968274,0.00023610804,0.00011914376,0.000018738792],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004642109,0.00002601685,0.0023083424,0.000009829759,0.000027216865,1.3997311e-7,0.0010509456,0.00003715106,0.9912128,0.00009213307,0.003788361,0.0014006757],"study_design_scores_gemma":[0.0010027775,0.00067825284,0.24951954,0.00001818273,0.00008822378,0.00025846495,0.008483668,0.00002167182,0.31182337,0.00022565533,0.42743415,0.00044606137],"about_ca_topic_score_codex":0.000029398667,"about_ca_topic_score_gemma":0.00004286107,"teacher_disagreement_score":0.6793894,"about_ca_system_score_codex":0.000008974921,"about_ca_system_score_gemma":0.000008970798,"threshold_uncertainty_score":0.27252802},"labels":[],"label_agreement":null},{"id":"W4388221977","doi":"10.1128/aem.01682-23","title":"Microbial biogeography of the eastern Yucatán carbonate aquifer","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Argonne National Laboratory; Canadian Institute for Advanced Research; David and Lucile Packard Foundation","keywords":"Aquifer; Cave; Groundwater; Ecology; Ecological niche; Sinkhole; Geology; Habitat; Biology; Paleontology; Karst","score_opus":0.004762370001369121,"score_gpt":0.16699847714797691,"score_spread":0.1622361071466078,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388221977","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99639016,0.000039337618,0.0000013351276,0.00020028916,0.00019467538,0.00022187625,0.000113253016,0.000026815653,0.0028122596],"genre_scores_gemma":[0.9986564,0.000090381924,0.00003308178,0.0006789632,0.000019957279,0.000013912345,0.00018374127,0.00001417827,0.00030941394],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989826,0.000112400245,0.00021910426,0.00030448532,0.000032884687,0.0003485119],"domain_scores_gemma":[0.999451,0.00006540662,0.00009823752,0.00033870433,6.972286e-7,0.00004600184],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00014602319,0.00018010102,0.00022294618,0.00004467692,0.0002285071,0.000003904585,0.0003818349,0.00018831594,0.0011038193],"category_scores_gemma":[0.000002419363,0.00013678393,0.00008812951,0.0001982112,0.0015832334,0.000024408188,0.0010773534,0.00021658196,0.0005624557],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024483561,0.00005450462,0.08636748,0.0000049516016,0.000024113853,6.931969e-7,0.00025745167,0.00004440016,0.91029453,0.00008602256,0.0024059506,0.00043539554],"study_design_scores_gemma":[0.0017206501,0.00023243064,0.7417763,0.000014047738,0.000089020024,0.00011387758,0.0007286571,0.00007513322,0.11929542,0.0029651124,0.13224705,0.00074232125],"about_ca_topic_score_codex":0.00017206179,"about_ca_topic_score_gemma":0.000120122204,"teacher_disagreement_score":0.7909991,"about_ca_system_score_codex":0.000026759462,"about_ca_system_score_gemma":0.0000040097643,"threshold_uncertainty_score":0.9998093},"labels":[],"label_agreement":null},{"id":"W4388526293","doi":"10.1128/aem.00987-23","title":"The effect of hydrostatic pressure on the activity and community composition of hydrocarbon-degrading bacteria in Arctic seawater","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fisheries and Oceans Canada; Government of Canada; Villum Fonden; Aarhus Universitet","keywords":"Seawater; Hydrostatic pressure; Bacteria; Hydrocarbon; Composition (language); Hydrostatic equilibrium; Environmental chemistry; Arctic; Chemistry; Environmental science; Biology; Ecology; Organic chemistry; Thermodynamics","score_opus":0.0048060319898202706,"score_gpt":0.1832046625795766,"score_spread":0.17839863058975633,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388526293","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992321,0.0000433479,6.7110744e-7,0.000087340006,0.000023332299,0.00028570683,0.000013814199,0.0000045829283,0.00030907258],"genre_scores_gemma":[0.999754,0.00013826137,0.0000044503536,0.000024017872,0.0000025898526,0.000018581133,0.000026670934,0.0000070356577,0.000024380375],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991904,0.00034695806,0.00013399006,0.00013195969,0.000036359605,0.00016034754],"domain_scores_gemma":[0.9991379,0.0006068656,0.00007576029,0.00015770522,1.8475791e-7,0.000021620912],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00053925236,0.00011021834,0.00016628594,0.000018220353,0.00019486896,0.000005057206,0.000100645615,0.00006326451,0.00003992996],"category_scores_gemma":[0.0000029871305,0.00005853992,0.000019565834,0.00006472827,0.00065123587,0.00001795528,0.00020272372,0.00025271552,0.000013182327],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009434175,0.000031170304,0.0232047,0.000023973209,0.000023631215,3.5458737e-7,0.00054597796,0.0002527022,0.9750735,0.000025054878,0.00000699637,0.00071757415],"study_design_scores_gemma":[0.0011239304,0.00079582474,0.39529765,0.00004295774,0.00006165591,0.000016863578,0.0004413588,0.0011592978,0.599804,0.00080776936,0.0002573687,0.00019134548],"about_ca_topic_score_codex":0.0002483416,"about_ca_topic_score_gemma":0.00001612083,"teacher_disagreement_score":0.37526953,"about_ca_system_score_codex":0.00002166818,"about_ca_system_score_gemma":5.8891396e-7,"threshold_uncertainty_score":0.23995058},"labels":[],"label_agreement":null},{"id":"W4389035959","doi":"10.1128/aem.01507-23","title":"The microbiome of two strategies for ammonia removal with the sequencing batch moving bed biofilm reactor treating cheese production wastewater","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University; University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Moving bed biofilm reactor; Nitrification; Wastewater; Sequencing batch reactor; Heterotroph; Denitrification; Biofilm; Sewage treatment; Pulp and paper industry; Chemistry; Environmental science; Environmental engineering; Environmental chemistry; Nitrogen; Bacteria; Biology","score_opus":0.009241770495572151,"score_gpt":0.19875130311476738,"score_spread":0.18950953261919523,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389035959","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986287,0.000059037866,0.0000073695005,0.00038654925,0.00005945784,0.00065234303,0.000045357952,0.000036140536,0.00012505529],"genre_scores_gemma":[0.99682206,0.000048570804,0.0023275549,0.000027749407,0.000051825333,0.00009347894,0.00016740353,0.000027448476,0.00043392507],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987788,0.00004595636,0.00022253179,0.00042078475,0.00006431207,0.0004676198],"domain_scores_gemma":[0.99950045,0.000077633355,0.00013423245,0.0002480707,0.0000018632649,0.0000377677],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025506836,0.0002336154,0.00019587754,0.000029800021,0.0005131382,0.00003811708,0.00018037396,0.00006957645,0.000024819905],"category_scores_gemma":[0.000002081458,0.000121198646,0.000054257747,0.00012890834,0.0007775495,0.00009135121,0.00020182205,0.000093827526,0.000042397933],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000112950765,0.000022655835,0.0012988253,0.000009496407,0.000059576945,0.000004136856,0.0012636809,0.00011072801,0.9955281,0.000034085664,0.00015785356,0.0013978792],"study_design_scores_gemma":[0.0009882658,0.00018843757,0.0015693821,0.000010885365,0.0000791675,0.00026356126,0.009984722,0.00006257246,0.98353666,0.00027456752,0.0027975293,0.00024426897],"about_ca_topic_score_codex":0.00018579024,"about_ca_topic_score_gemma":0.0001582753,"teacher_disagreement_score":0.011991492,"about_ca_system_score_codex":0.00013164178,"about_ca_system_score_gemma":0.000010553292,"threshold_uncertainty_score":0.49423373},"labels":[],"label_agreement":null},{"id":"W4389088956","doi":"10.1128/aem.01393-23","title":"Selective cell lysis pressure on rare and abundant prokaryotic taxa across a shelf-to-slope continuum in the Northern South China Sea","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Fundamental Research Funds for the Central Universities; Natural Sciences and Engineering Research Council of Canada; Chinese Academy of Sciences; National Natural Science Foundation of China; Nutrition Obesity Research Center, University of North Carolina; Tula Foundation; Gordon and Betty Moore Foundation","keywords":"Lysis; Alteromonas; Biology; Taxon; Prochlorococcus; Microbial population biology; Ecology; Extreme environment; Marine bacteriophage; Bacteria; Cyanobacteria; Synechococcus; Genetics; Biochemistry","score_opus":0.003574818537757547,"score_gpt":0.1883302653842212,"score_spread":0.18475544684646367,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389088956","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975328,0.000042231542,0.000008042238,0.00030184054,0.00005330278,0.0006352764,0.00032985146,0.000025162566,0.0010714955],"genre_scores_gemma":[0.99824035,0.00005314493,0.000042840464,0.0006145287,0.000025352729,0.000098201126,0.00013020393,0.000020762605,0.000774641],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99876213,0.00006145092,0.00017895064,0.0005229138,0.000045869016,0.00042870472],"domain_scores_gemma":[0.99962926,0.0000458215,0.00006710437,0.00019005456,7.0986096e-7,0.00006702542],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014539072,0.00022186697,0.00021062359,0.000035102625,0.0002635796,0.000041343712,0.00017637713,0.000107910535,0.0002030423],"category_scores_gemma":[0.0000028930144,0.000163073,0.000039981587,0.00016334745,0.0002795455,0.000050389637,0.00032597763,0.000244863,0.00056335545],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007139057,0.00012796596,0.032976847,0.0000114679515,0.000023487326,0.000009336056,0.009503721,0.00012663443,0.9539026,0.0000023886307,0.00069757865,0.002546609],"study_design_scores_gemma":[0.0007468658,0.00023308276,0.9598279,0.000011743007,0.000033250893,0.000053652773,0.0033593404,0.000027007927,0.016236054,0.00002713101,0.01912996,0.00031399808],"about_ca_topic_score_codex":0.00021050543,"about_ca_topic_score_gemma":0.0008093201,"teacher_disagreement_score":0.93766654,"about_ca_system_score_codex":0.00006012071,"about_ca_system_score_gemma":0.000002709254,"threshold_uncertainty_score":0.72409827},"labels":[],"label_agreement":null},{"id":"W4389223262","doi":"10.1128/aem.01673-23","title":"Species identification and strain discrimination of fermentation yeasts <i>Saccharomyces cerevisiae</i> and <i>Saccharomyces uvarum</i> using Raman spectroscopy and convolutional neural networks","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Spectroscopy and Chemometric Analyses","field":"Chemistry","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Saccharomyces cerevisiae; Yeast; Fermentation; Strain (injury); Wine; Biology; Raman spectroscopy; Food science; Saccharomyces; Biological system; Artificial intelligence; Biochemistry; Computer science; Physics; Optics","score_opus":0.012417992411162882,"score_gpt":0.22759640172911028,"score_spread":0.2151784093179474,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389223262","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979634,0.0012967015,0.00021214323,0.0000906812,0.000026372974,0.00009746376,0.0002038689,0.00002538862,0.00008392912],"genre_scores_gemma":[0.9966882,0.0021610868,0.000188735,0.00004123318,0.00005357885,0.000009370262,0.0007324713,0.0000133723715,0.000111984285],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990918,0.000015765778,0.00025873806,0.0003729003,0.000054276286,0.00020650211],"domain_scores_gemma":[0.9996399,0.000055330882,0.00016203987,0.0000857637,0.00000356284,0.00005337234],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000087223154,0.00017852795,0.00024403393,0.000090824455,0.00015647178,0.000039354803,0.000053201526,0.00011399182,0.00009376366],"category_scores_gemma":[0.0000035260873,0.00017620783,0.000022359538,0.00010350001,0.0004996365,0.00009817386,0.00010693788,0.00009937089,0.0000012952041],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024957795,0.000026901396,0.01995153,0.00008216571,0.000045216377,7.1898654e-7,0.0001884898,0.000025055893,0.97861075,0.0002813585,0.00002879118,0.0007340329],"study_design_scores_gemma":[0.001441329,0.00007568744,0.20129704,0.00003126911,0.00035103702,0.00013586396,0.005987795,0.004389689,0.78497195,0.0007516831,0.00010327894,0.00046337474],"about_ca_topic_score_codex":0.000019282807,"about_ca_topic_score_gemma":0.0000037883597,"teacher_disagreement_score":0.19363883,"about_ca_system_score_codex":0.00003528583,"about_ca_system_score_gemma":0.0000039040833,"threshold_uncertainty_score":0.7185547},"labels":[],"label_agreement":null},{"id":"W4389397400","doi":"10.1128/aem.01320-23","title":"Comparative analysis of functional diversity of rumen microbiome in bison and beef heifers","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Saskatchewan; Concordia University","funders":"Alberta Milk; Alberta Agriculture and Forestry","keywords":"Rumen; Biology; Microbiome; Ruminant; Beef cattle; Animal science; Microbiology; Food science; Agronomy; Crop; Genetics; Fermentation","score_opus":0.019207943334986707,"score_gpt":0.19536669593244121,"score_spread":0.1761587525974545,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389397400","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99926144,0.00007842908,5.5669597e-7,0.000081366714,0.000012122351,0.000079197,0.00037309073,0.0000055088913,0.00010826381],"genre_scores_gemma":[0.9989134,0.00019738002,0.000007443853,0.00004411409,0.00000497603,0.0000032792402,0.0008118335,2.6005927e-7,0.000017285844],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995106,0.000028946733,0.00013326437,0.00019133119,0.000019409625,0.000116480296],"domain_scores_gemma":[0.99979746,0.00009419799,0.000060840975,0.000020466878,0.000002178887,0.00002483432],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000058803646,0.00007501955,0.0002778871,0.00006233064,0.000061639,0.0000013952114,0.00004506597,0.00006470606,0.00011899359],"category_scores_gemma":[7.4725244e-7,0.000038420065,0.0000376948,0.00028753036,0.00034947958,0.000017166163,0.00019609588,0.000037780585,0.0000049599944],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005685948,0.00007314203,0.091472164,0.0000031621742,0.00006350942,3.2723884e-7,0.00013188114,0.000014016561,0.9074633,0.000118293436,0.00004850683,0.0005548406],"study_design_scores_gemma":[0.00022943945,0.00010761471,0.97829413,0.0000017734144,0.000037949594,0.0000014612826,0.0011507467,0.00001683652,0.019687211,0.00011084151,0.00029483423,0.00006712923],"about_ca_topic_score_codex":0.00008532733,"about_ca_topic_score_gemma":0.00006563071,"teacher_disagreement_score":0.8877761,"about_ca_system_score_codex":0.000009273083,"about_ca_system_score_gemma":8.0628314e-7,"threshold_uncertainty_score":0.15667248},"labels":[],"label_agreement":null},{"id":"W4390941752","doi":"10.1128/aem.01213-23","title":"Wastewater contaminants in a fractured bedrock aquifer and their potential use as enteric virus indicators","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fecal contamination and water quality","field":"Environmental Science","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Environment and Climate Change Canada; University of Guelph","funders":"Environment and Climate Change Canada; University of Waterloo","keywords":"Bedrock; Aquifer; Wastewater; Contamination; Groundwater; Enteric virus; Geology; Environmental science; Hydrology (agriculture); Environmental chemistry; Environmental engineering; Biology; Microbiology; Chemistry; Geotechnical engineering; Ecology; Geomorphology","score_opus":0.004692820088327944,"score_gpt":0.1891306093584682,"score_spread":0.18443778927014026,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390941752","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99886817,0.00030405063,0.000058205034,0.00010973923,0.00009147375,0.00028525104,0.00007592835,0.000025053532,0.00018213922],"genre_scores_gemma":[0.99850494,0.00018940891,0.000029928184,0.00070605753,0.000015499678,0.00003306077,0.00012180474,0.000016746482,0.00038255632],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99888843,0.00006321197,0.00021751961,0.00049463956,0.000043307293,0.00029291192],"domain_scores_gemma":[0.99972254,0.0000383453,0.00003184391,0.000115926625,2.218503e-7,0.000091095055],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012175226,0.00021437196,0.00019847408,0.00007565113,0.00007167742,0.00004761169,0.00008814577,0.0001568489,0.00085398357],"category_scores_gemma":[0.000001633483,0.00015863912,0.000031620857,0.000065488864,0.00038307832,0.0001354378,0.00030528044,0.00017693824,0.0002938857],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004459998,0.00007288622,0.018142816,0.0000114339,0.000017882612,0.00002556113,0.0015863794,0.00000416023,0.9635949,0.00004696376,0.00011840993,0.016333988],"study_design_scores_gemma":[0.0018484112,0.0002593062,0.54026115,0.000033164124,0.000036395355,0.0003249225,0.0012441446,0.0002630659,0.34471133,0.0006983784,0.10949428,0.0008254377],"about_ca_topic_score_codex":0.00024733928,"about_ca_topic_score_gemma":0.00004798868,"teacher_disagreement_score":0.6188836,"about_ca_system_score_codex":0.000092488866,"about_ca_system_score_gemma":0.000002478696,"threshold_uncertainty_score":0.9350521},"labels":[],"label_agreement":null},{"id":"W4391025254","doi":"10.1128/aem.01739-23","title":"Exposure to a fungicide for a field-realistic duration does not alter bumble bee fecal microbiota structure","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Insect and Pesticide Research","field":"Agricultural and Biological Sciences","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Government of Ontario","keywords":"Feces; Biology; Fungicide; Duration (music); Ecology; Toxicology; Botany; Physics","score_opus":0.0075083145790858586,"score_gpt":0.2122690952062511,"score_spread":0.20476078062716524,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391025254","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996347,0.00019213825,0.000060330836,0.0014759854,0.00012557139,0.00044809346,0.0012427914,0.000028955357,0.00007915041],"genre_scores_gemma":[0.9972101,0.00002950031,0.00017601484,0.0011047856,0.0002942481,0.00004658637,0.00081231754,0.0000024896813,0.0003239727],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99910086,0.00002199808,0.00015986295,0.00037360875,0.000033822656,0.00030981476],"domain_scores_gemma":[0.9996183,0.0002469,0.00001823741,0.00003768991,0.0000031867278,0.00007570948],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007993664,0.00015017246,0.00014996203,0.000016895321,0.00015775104,0.00006495084,0.00010451002,0.00016837011,0.00080643594],"category_scores_gemma":[0.0000065186105,0.00005863918,0.00004817014,0.000055706805,0.00006144712,0.00002699049,0.0000875026,0.00011759344,0.00004230937],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000086333464,0.000016459657,0.0001930307,0.000023515831,0.000017035492,0.000003015171,0.00009620795,0.0000028860616,0.9826968,0.00043661153,0.000921538,0.015506575],"study_design_scores_gemma":[0.0002507875,0.00084413466,0.0062129823,0.00002295306,0.000033641332,0.000087164684,0.00022214236,0.00003986218,0.9546388,0.001099463,0.03619681,0.0003513106],"about_ca_topic_score_codex":0.000057058493,"about_ca_topic_score_gemma":0.00025077068,"teacher_disagreement_score":0.03527527,"about_ca_system_score_codex":0.00002772488,"about_ca_system_score_gemma":0.0000039051583,"threshold_uncertainty_score":0.8829908},"labels":[],"label_agreement":null},{"id":"W4391135894","doi":"10.1128/aem.00842-23","title":"Targeted genomic sequencing of avian influenza viruses in wetland sediment from wild bird habitats","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Health Services Authority; Ministry of Agriculture; University of British Columbia","funders":"","keywords":"Biology; Influenza A virus subtype H5N1; Metagenomics; Genome; Influenza A virus; Shotgun sequencing; Fosmid; Genomic sequencing; Hemagglutinin (influenza); Habitat; Virology; Ecology; Virus; Genetics; Gene","score_opus":0.03076624503775975,"score_gpt":0.279169288138836,"score_spread":0.24840304310107625,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391135894","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98989826,0.009107471,0.0000067046167,0.00006528767,0.00006146787,0.00037913385,0.00022212675,0.00004040804,0.00021915187],"genre_scores_gemma":[0.99773306,0.0006272032,0.0003842745,0.0010440784,0.00005288939,0.000026804553,0.00008084185,0.000032480144,0.00001837737],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988744,0.000029996312,0.00032876484,0.00038562802,0.000061248495,0.00031991318],"domain_scores_gemma":[0.9996308,0.00010297144,0.000038730042,0.00015486781,0.0000021968192,0.00007040611],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012066296,0.00019254598,0.00037416143,0.00015961568,0.000045245986,0.00000879829,0.00006485826,0.00013000262,0.00013545048],"category_scores_gemma":[0.0000065546456,0.000160903,0.000045752826,0.00007416683,0.00042113845,0.00003513504,0.00018197577,0.0002463494,0.00013299682],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017225654,0.000045557776,0.0814691,0.0000704011,0.00015597131,0.000033803582,0.0009767322,0.000015448892,0.91556203,0.000037869766,0.000096558964,0.0013642568],"study_design_scores_gemma":[0.004173329,0.00047050792,0.3218062,0.00026703297,0.00014264794,0.000068934714,0.0021449386,0.000092508286,0.6414766,0.0004549843,0.028421769,0.0004806172],"about_ca_topic_score_codex":0.0004579139,"about_ca_topic_score_gemma":0.000057757024,"teacher_disagreement_score":0.2740855,"about_ca_system_score_codex":0.00026312243,"about_ca_system_score_gemma":0.000038159676,"threshold_uncertainty_score":0.6561434},"labels":[],"label_agreement":null},{"id":"W4391434606","doi":"10.1128/aem.01419-23","title":"Measuring differential fitness costs and interactions between genetic cassettes using fluorescent spectrophotometry","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Genetically Modified Organisms Research","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Spectrophotometry; Fluorescence; Differential (mechanical device); Biological system; Biology; Chemistry; Chromatography; Optics; Engineering; Physics","score_opus":0.02466321322896023,"score_gpt":0.21873765429371222,"score_spread":0.194074441064752,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391434606","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987972,0.00060555706,0.000052305295,0.00012301948,0.000070722635,0.00017423657,0.00011879212,0.000026488242,0.00003172318],"genre_scores_gemma":[0.99926776,0.0001975376,0.00020468768,0.000027386557,0.00016604463,0.000007803447,0.0001093508,0.0000029098126,0.000016500711],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99910057,0.00003557111,0.00013873701,0.0003873507,0.000052862804,0.00028489638],"domain_scores_gemma":[0.999738,0.00010680075,0.000016272494,0.000040828007,0.0000016999815,0.000096423246],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000043820153,0.0001446962,0.00014845279,0.0000270918,0.0001586104,0.000076025455,0.00008802698,0.00008702985,0.00034175313],"category_scores_gemma":[0.000001913584,0.00006986994,0.00002816749,0.0000734084,0.0002116311,0.000022657689,0.00023610746,0.00017708408,0.000031179065],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000058017326,0.000020306456,0.0066536153,0.000008597617,0.00002599692,0.000005974322,0.00002556813,8.42918e-7,0.9566519,0.00002058918,0.000010281636,0.03657049],"study_design_scores_gemma":[0.00016927777,0.00011394038,0.54771066,0.000022464154,0.000050936076,0.00019312112,0.00026964254,0.00015619672,0.4489337,0.00013732928,0.0019416452,0.0003010898],"about_ca_topic_score_codex":0.00007427462,"about_ca_topic_score_gemma":0.000022503376,"teacher_disagreement_score":0.54105705,"about_ca_system_score_codex":0.0000745712,"about_ca_system_score_gemma":0.000002790882,"threshold_uncertainty_score":0.37419572},"labels":[],"label_agreement":null},{"id":"W4391531754","doi":"10.1128/aem.01062-23","title":"Degradation of <i>Listeria monocytogenes</i> biofilm by phages belonging to the genus <i>Pecentumvirus</i>","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada","keywords":"Listeria monocytogenes; Listeria; Biofilm; Microbiology; Biology; Bacteria; Bacteriophage; Pathogenic bacteria; Food microbiology; Food science; Escherichia coli","score_opus":0.013758067322108056,"score_gpt":0.2366651113787746,"score_spread":0.22290704405666656,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391531754","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9915894,0.005615698,0.00096838886,0.0002838542,0.00028728394,0.0003001172,0.0007144782,0.000014513734,0.00022622947],"genre_scores_gemma":[0.9960219,0.0010272851,0.00033486527,0.00092609477,0.000101414415,0.000046369467,0.0012537508,0.000029823274,0.00025849912],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99903095,0.000035985908,0.00022710612,0.0004414988,0.000036203866,0.00022824622],"domain_scores_gemma":[0.9996053,0.000014156226,0.0000463505,0.00027928298,0.0000023783773,0.000052561667],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000116630865,0.00019057492,0.0001519632,0.000028045726,0.000085879845,0.000021653013,0.00019736275,0.00013570553,0.00002477085],"category_scores_gemma":[0.0000020695054,0.00014987994,0.00005114727,0.000055018092,0.00018626219,0.000003906458,0.0003690549,0.000060389975,0.000028268072],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059325037,0.000023641449,0.00032460823,0.000019565117,0.00006520208,9.3966213e-7,0.000057544294,0.00001564808,0.9844488,0.000069656235,0.003850683,0.011064368],"study_design_scores_gemma":[0.00015133177,0.00008799437,0.00012954528,0.0000046708446,0.000022027614,0.0000429502,0.00007203709,0.0000048540574,0.69107074,0.0000069959797,0.3082793,0.00012752555],"about_ca_topic_score_codex":0.000012547603,"about_ca_topic_score_gemma":0.0000060670927,"teacher_disagreement_score":0.30442864,"about_ca_system_score_codex":0.000023397368,"about_ca_system_score_gemma":0.0000108780105,"threshold_uncertainty_score":0.61119264},"labels":[],"label_agreement":null},{"id":"W4391576706","doi":"10.1128/aem.02276-23","title":"The effect of seed germination and <i>Bacillus</i> spp. on the ripening of plant cheese analogs","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canada Research Chairs; Government of Canada","keywords":"Starter; Fermentation; Ripening; Food science; Germination; Flavor; Bacilli; Cheese ripening; Lactic acid; Biology; Bacteria; Lactobacillus; Fermentation in food processing; Fermentation starter; Biotechnology; Botany","score_opus":0.0036062849496306406,"score_gpt":0.15874787738163965,"score_spread":0.155141592432009,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391576706","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99820125,0.0007472519,4.300637e-7,0.000272109,0.0000352899,0.00016980724,0.00016456949,0.0000052363634,0.00040406824],"genre_scores_gemma":[0.99953973,0.0002643866,0.0000021130038,0.000049057122,0.000017409018,0.0000069297553,0.000091018694,6.959089e-7,0.000028641332],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995867,0.000036752226,0.000111124595,0.00013969993,0.000025292768,0.000100444304],"domain_scores_gemma":[0.9996285,0.00028494772,0.000038784237,0.000031341195,7.023803e-7,0.000015742138],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020498439,0.000081908714,0.00010416751,0.0000052686287,0.00010921408,0.00001156225,0.000070916554,0.0000589321,0.000015631676],"category_scores_gemma":[0.0000025452057,0.000022473077,0.000026542646,0.000037551414,0.00028296193,0.000009262419,0.000070155904,0.00007808471,0.0000035636488],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003694117,0.000008904085,0.0006337911,0.0000081302605,0.00001902148,4.5165956e-7,0.000042715972,5.91416e-7,0.98643833,0.000751946,0.000057530204,0.012001642],"study_design_scores_gemma":[0.00043851123,0.0022905516,0.10906017,0.00006100677,0.000058102527,0.0000574819,0.000652592,0.00018342682,0.8556713,0.00048764682,0.030800613,0.00023862916],"about_ca_topic_score_codex":0.0000091615375,"about_ca_topic_score_gemma":0.000004176233,"teacher_disagreement_score":0.13076706,"about_ca_system_score_codex":0.0000066830935,"about_ca_system_score_gemma":8.3268975e-7,"threshold_uncertainty_score":0.1042585},"labels":[],"label_agreement":null},{"id":"W4391786263","doi":"10.1128/aem.01809-23","title":"Anthropogenic contamination sources drive differences in antimicrobial-resistant <i>Escherichia coli</i> in three urban lakes","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada; German Network for Bioinformatics Infrastructure; Albert-Ludwigs-Universität Freiburg; Bundesministerium für Bildung und Forschung; Deutsche Forschungsgemeinschaft; Memorial University of Newfoundland; Government of Canada","keywords":"Biology; Antibiotic resistance; Population; Mobile genetic elements; Antimicrobial; Resistome; Horizontal gene transfer; Escherichia coli; Multiple drug resistance; Drug resistance; Microbiology; Cefotaxime; Genetics; Gene cassette; Amikacin; Antibiotics; Integron; Genome; Gene; Medicine; Environmental health","score_opus":0.004206308475442772,"score_gpt":0.1856428017665206,"score_spread":0.18143649329107783,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391786263","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99715537,0.0020610974,0.00009633652,0.0000658598,0.00011940514,0.0002555887,0.000089141016,0.000011162231,0.00014605414],"genre_scores_gemma":[0.998273,0.00097265095,0.000109413304,0.000117892625,0.000058271053,0.000014320548,0.0003421137,0.00002149452,0.00009084909],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99887466,0.000042407028,0.000258658,0.0005129718,0.000028974147,0.00028232456],"domain_scores_gemma":[0.99975467,0.000022558896,0.000046857964,0.00014161943,0.0000015789358,0.000032688193],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009892556,0.00020761821,0.00023449979,0.000066633744,0.000047758615,0.00003078639,0.00012255467,0.00021766752,0.000031631833],"category_scores_gemma":[0.0000029597747,0.00019068594,0.0000384423,0.000066765526,0.00047598238,0.000005783966,0.00010917615,0.00012416816,0.000013985183],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007722598,0.00006017812,0.13428722,0.000027866801,0.000024814384,0.000009486975,0.00012215986,0.000001729247,0.8649024,0.0001335344,0.00006130152,0.00029209562],"study_design_scores_gemma":[0.0008867418,0.00020111902,0.6343312,0.00007498431,0.000022381264,0.000022043254,0.00064053904,0.000030036153,0.3576027,0.00010458625,0.0056399945,0.0004436601],"about_ca_topic_score_codex":0.000029834517,"about_ca_topic_score_gemma":0.00047367497,"teacher_disagreement_score":0.50729966,"about_ca_system_score_codex":0.000040254166,"about_ca_system_score_gemma":0.00001906474,"threshold_uncertainty_score":0.7775947},"labels":[],"label_agreement":null},{"id":"W4392004351","doi":"10.1128/aem.02155-23","title":"The catabolism of lignin-derived <i>p</i> -methoxylated aromatic compounds by <i>Rhodococcus jostii</i> RHA1","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Lignin and Wood Chemistry","field":"Engineering","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Office of Energy Efficiency; Office of Sustainable Transportation; Bioenergy Technologies Office; Natural Sciences and Engineering Research Council of Canada; Biological and Environmental Research; U.S. Department of Energy; Office of Energy Efficiency and Renewable Energy; Center for Bioenergy Innovation; Office of Science","keywords":"Lignin; Catabolism; Rhodococcus; Rhodococcus rhodochrous; Chemistry; Organic chemistry; Microbiology; Stereochemistry; Biochemistry; Biology; Metabolism; Enzyme","score_opus":0.001849600084724503,"score_gpt":0.15343288518114517,"score_spread":0.15158328509642066,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392004351","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9840578,0.011297275,0.00002852557,0.00005140131,0.00021438222,0.00014924821,0.00023028525,0.00013050596,0.0038405675],"genre_scores_gemma":[0.9978113,0.0014999656,0.0001240275,0.00007895263,0.000038355534,0.000021760166,0.00028682855,0.000030045876,0.00010876801],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99928683,0.000013947938,0.00022926115,0.00019759902,0.000030444004,0.0002419326],"domain_scores_gemma":[0.9996259,0.00013594842,0.000023058108,0.00016415658,6.681091e-7,0.000050218445],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007493098,0.00018565088,0.00020450851,0.000016303395,0.00007362361,0.000022781956,0.00013464953,0.00013155195,0.0000060972043],"category_scores_gemma":[8.4104965e-7,0.00014044609,0.000040205512,0.00004824459,0.00030372068,0.000021274103,0.000069395086,0.00016988607,0.000038855887],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000021825117,0.0000125150555,0.000029717603,0.000056892834,0.00007565127,0.0000015927147,0.0001272402,0.000007095892,0.9678279,0.000037405513,0.030872807,0.0009490134],"study_design_scores_gemma":[0.00021746363,0.000013874963,0.00003755611,0.000015335476,0.000030368561,0.000041439762,0.00018090953,0.000060241913,0.9564416,0.00016826394,0.04263137,0.00016161667],"about_ca_topic_score_codex":0.0000034084867,"about_ca_topic_score_gemma":3.7961223e-7,"teacher_disagreement_score":0.013753487,"about_ca_system_score_codex":0.000026432686,"about_ca_system_score_gemma":0.0000044783656,"threshold_uncertainty_score":0.57272255},"labels":[],"label_agreement":null},{"id":"W4392651679","doi":"10.1128/aem.00052-24","title":"The prokaryotic and eukaryotic microbiome of Pacific oyster spat is shaped by ocean warming but not acidification","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Marine Bivalve and Aquaculture Studies","field":"Environmental Science","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Fisheries and Oceans Canada; Vancouver Island University; Shell (Canada); Tula Foundation; University of British Columbia","funders":"British Columbia Knowledge Development Fund; Hakai Institute; Canada Foundation for Innovation; Ministry of Technology, Innovation and Citizens' Services; Fisheries and Oceans Canada; Tula Foundation; Gordon and Betty Moore Foundation","keywords":"Biology; Ocean acidification; Crassostrea; Effects of global warming on oceans; Microbiome; Ecology; Pacific oyster; Relative species abundance; Bacteroidetes; Oyster; Phylum; Abundance (ecology); Zoology; Global warming; Climate change; Bacteria; 16S ribosomal RNA","score_opus":0.0049488188112704655,"score_gpt":0.18395579245072552,"score_spread":0.17900697363945506,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392651679","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961867,0.0016104301,0.00003483635,0.00072314974,0.00007431758,0.00032125757,0.00013055153,0.000021991713,0.0008968013],"genre_scores_gemma":[0.99671924,0.0011225808,0.000076216595,0.0002263753,0.00002270613,0.000013300735,0.00009328121,0.000015919535,0.0017103755],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989746,0.000026790103,0.00023723279,0.00044925744,0.000051232702,0.0002608562],"domain_scores_gemma":[0.99966586,0.00007563126,0.00005832272,0.00015310288,7.5288204e-7,0.000046324345],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001336303,0.00020275074,0.00018463805,0.00001965746,0.00022594356,0.000032681317,0.00012016858,0.000088356675,0.00015416447],"category_scores_gemma":[0.0000018570519,0.00013288266,0.000042447286,0.000057335426,0.00090955605,0.000052471216,0.00032902093,0.00011931025,0.00011115857],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016708056,0.000026727017,0.005591234,0.00003570014,0.000041278738,0.00000110972,0.00069151487,3.6233473e-7,0.98402566,0.00005328448,0.0034027076,0.006113745],"study_design_scores_gemma":[0.001392844,0.00041018144,0.06934946,0.00007914444,0.0003112936,0.00034397194,0.0075652846,0.00041668324,0.647763,0.0007566201,0.27031735,0.0012941272],"about_ca_topic_score_codex":0.000025701383,"about_ca_topic_score_gemma":0.0000036127633,"teacher_disagreement_score":0.33626258,"about_ca_system_score_codex":0.000043269552,"about_ca_system_score_gemma":0.0000020817038,"threshold_uncertainty_score":0.5418798},"labels":[],"label_agreement":null},{"id":"W4392892920","doi":"10.1128/aem.00157-24","title":"Toward the development of a molecular toolkit for the microbial remediation of per-and polyfluoroalkyl substances","year":2024,"lang":"en","type":"review","venue":"Applied and Environmental Microbiology","topic":"Per- and polyfluoroalkyl substances research","field":"Environmental Science","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canada Excellence Research Chairs, Government of Canada; Commonwealth Scientific and Industrial Research Organisation","keywords":"Biodegradation; Environmental chemistry; Biotransformation; Laccase; Bioremediation; Environmental remediation; Microorganism; Chemistry; Microbial biodegradation; Human health; Contamination; Biology; Enzyme; Bacteria; Ecology; Organic chemistry","score_opus":0.026954420692498822,"score_gpt":0.2684804955167848,"score_spread":0.241526074824286,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392892920","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.015931286,0.98212844,0.00016404007,0.000066894725,0.00010288133,0.0011556176,0.00029944957,0.000006481856,0.00014489854],"genre_scores_gemma":[0.055553548,0.94313776,0.00062148756,0.00003900475,0.000038383998,0.0002485373,0.00021337673,0.000032102445,0.00011580421],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984121,0.00006709436,0.00058465445,0.00048286226,0.00011514595,0.00033819114],"domain_scores_gemma":[0.9992009,0.00025487118,0.00023261733,0.00025973283,0.0000016806796,0.000050239203],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004003334,0.00033928317,0.00067667494,0.000043380605,0.00014865538,0.0000182075,0.000420607,0.00023033428,0.00016085716],"category_scores_gemma":[0.0000049709042,0.00018323533,0.0001655525,0.000099358105,0.001486028,0.000027721844,0.00043942998,0.00025055502,0.000040156603],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020752244,0.000032096763,0.000025656414,0.0010913196,0.00016005442,5.535635e-7,0.00141821,0.000001418045,0.12526585,0.00009357838,0.00022889298,0.8716616],"study_design_scores_gemma":[0.0002189996,0.000057070472,0.00006873244,0.0001982531,0.0004065722,0.000034850513,0.00047755576,0.0000034936347,0.0073078363,0.000077128614,0.99088615,0.00026337107],"about_ca_topic_score_codex":0.000015857502,"about_ca_topic_score_gemma":0.00003504063,"teacher_disagreement_score":0.99065727,"about_ca_system_score_codex":0.00010877567,"about_ca_system_score_gemma":0.00003830223,"threshold_uncertainty_score":0.747212},"labels":[],"label_agreement":null},{"id":"W4394683146","doi":"10.1128/aem.02349-23","title":"Redefining piscine lactococcosis","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Agricultural Research Service; California Department of Fish and Wildlife; University of California, Davis; Mississippi State University; U.S. Department of Agriculture","keywords":"Biology; Ribotyping; Microbiology; Pathogen; Typing; Antimicrobial; Gene; Genetics; Polymerase chain reaction","score_opus":0.004561330092972418,"score_gpt":0.1795705244638135,"score_spread":0.1750091943708411,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394683146","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9529343,0.026492925,0.0001891718,0.0006727163,0.00089350657,0.00059930095,0.00040804467,0.00037676454,0.017433252],"genre_scores_gemma":[0.9930129,0.00041690638,0.000064990905,0.00052708824,0.00004267369,0.000038742637,0.0015429136,0.000026306268,0.0043274797],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988953,0.000031452866,0.00019691781,0.00050691277,0.000009384763,0.0003600384],"domain_scores_gemma":[0.9997346,0.000044773617,0.000030137639,0.00016232661,0.0000011838882,0.000027001315],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00009112137,0.00024044505,0.00022341199,0.0000919768,0.0001570787,0.00003078388,0.00012137327,0.00021375576,0.0014741143],"category_scores_gemma":[0.0000016694042,0.0001962617,0.00006922225,0.00006569466,0.0003578564,0.000045738863,0.00020210451,0.00021856712,0.0022016058],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027887481,0.000043896478,0.00025970378,0.000028487084,0.0001811867,0.0000083412615,0.00023310183,5.58614e-7,0.96825814,0.0046942094,0.016748324,0.009516143],"study_design_scores_gemma":[0.0008273155,0.000082337785,0.0013603179,0.000033513104,0.00014843856,0.0001932505,0.0007497985,0.0000022642248,0.08395193,0.00027785279,0.91197276,0.00040024918],"about_ca_topic_score_codex":0.000008264955,"about_ca_topic_score_gemma":0.0000019078873,"teacher_disagreement_score":0.8952244,"about_ca_system_score_codex":0.000036927795,"about_ca_system_score_gemma":0.000007422621,"threshold_uncertainty_score":0.9994387},"labels":[],"label_agreement":null},{"id":"W4394838323","doi":"10.1128/aem.00286-24","title":"Warming alters life-history traits and competition in a phage community","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Environment Research Council; Natural Sciences and Engineering Research Council of Canada; Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Sight Research UK; UK Research and Innovation","keywords":"Biology; Competition (biology); Lytic cycle; Bacteriophage; Host (biology); Infectivity; Parasite hosting; Experimental evolution; Microbiology; Ecology; Genetics; Virus; Gene","score_opus":0.009273829115491697,"score_gpt":0.19225417713005277,"score_spread":0.1829803480145611,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394838323","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996572,0.00063197094,0.00004354652,0.00010092101,0.00010515016,0.00013150333,0.000042837713,0.000025551637,0.0023465243],"genre_scores_gemma":[0.9986974,0.00026300186,0.00013785913,0.00062517397,0.000018456538,0.000015453654,0.00007441853,0.000012558523,0.00015566802],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.999365,0.00005299648,0.00014441356,0.00023817767,0.000016552103,0.00018290059],"domain_scores_gemma":[0.9998054,0.00004890653,0.000021375025,0.00006197083,1.5228647e-7,0.00006217648],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00010234541,0.00012899505,0.00012843974,0.00003877822,0.00009568295,0.000014851138,0.00006329373,0.00007796207,0.001207501],"category_scores_gemma":[0.0000010993085,0.0001269681,0.000021722037,0.000029374058,0.00041997634,0.00009408435,0.00017775121,0.00029194856,0.00015124747],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009652095,0.00005869741,0.00024245244,0.000014499186,0.000010487356,0.0000056988843,0.0012978864,0.000005785494,0.99121857,0.000116121366,0.00033222148,0.0066879564],"study_design_scores_gemma":[0.0023260184,0.0003915999,0.42152372,0.00015872375,0.000112163405,0.0011096164,0.0059259906,0.0003632264,0.0313859,0.0007031142,0.534625,0.0013749159],"about_ca_topic_score_codex":0.00031043813,"about_ca_topic_score_gemma":0.00014878363,"teacher_disagreement_score":0.95983267,"about_ca_system_score_codex":0.00021975448,"about_ca_system_score_gemma":0.000003227977,"threshold_uncertainty_score":0.99970555},"labels":[],"label_agreement":null},{"id":"W4398168515","doi":"10.1128/aem.00600-24","title":"Critical analysis of polycyclic tetramate macrolactam biosynthetic gene cluster phylogeny and functional diversity","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Queen's University; University of Nebraska-Lincoln; Institute of Clinical and Translational Sciences; Amgen; National Science Foundation","keywords":"Phylogenetics; Diversity (politics); Biology; Gene cluster; Functional diversity; Evolutionary biology; Gene; Cluster (spacecraft); Computational biology; Genetics; Ecology; Sociology; Anthropology; Computer science","score_opus":0.006924804508244994,"score_gpt":0.20155687397311517,"score_spread":0.19463206946487016,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4398168515","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99686307,0.0017898475,0.000030498326,0.00071034185,0.00008665426,0.00012483292,0.00027172067,0.000016387263,0.00010665656],"genre_scores_gemma":[0.9985413,0.00042171666,0.00018773867,0.00048224753,0.000050312312,6.9025003e-7,0.0001882309,0.00000887932,0.000118870565],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992053,0.000019363486,0.00016533051,0.00038839914,0.00003922743,0.00018240562],"domain_scores_gemma":[0.9997012,0.00009045171,0.0000218485,0.0001125955,0.00000220078,0.00007168824],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008871119,0.00014360114,0.00031333868,0.0001665107,0.0001015505,0.00001103868,0.000032522214,0.00013705576,0.00037737063],"category_scores_gemma":[0.00000660798,0.00010775447,0.00008823908,0.000121085715,0.0005412391,0.000023176306,0.00022065501,0.00012554921,0.000017938872],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013746807,0.00007266979,0.0029819293,0.000055727574,0.0005928167,0.000007069356,0.000076161145,4.751444e-7,0.99180067,0.00010798553,0.00013596391,0.004031041],"study_design_scores_gemma":[0.0007908614,0.00023822013,0.19741862,0.000032409127,0.0044763465,0.00052269426,0.0002027897,0.00022583513,0.7903581,0.00015898491,0.0051954743,0.0003796661],"about_ca_topic_score_codex":0.000016106358,"about_ca_topic_score_gemma":0.0000021556561,"teacher_disagreement_score":0.20144258,"about_ca_system_score_codex":0.000026898737,"about_ca_system_score_gemma":0.0000050872354,"threshold_uncertainty_score":0.43941},"labels":[],"label_agreement":null},{"id":"W4398206046","doi":"10.1128/aem.00142-24","title":"Effects of the nematode <i>Litylenchus crenatae</i> subsp. <i>mccannii</i> and beech leaf disease on leaf fungal and bacterial communities on <i>Fagus grandifolia</i> (American beech)","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"U.S. Department of Agriculture","keywords":"Beech; Biology; Infestation; Nematode; Fagaceae; Colonization; Botany; Nematode infection; Ecology","score_opus":0.0025632565923434133,"score_gpt":0.16862029105950344,"score_spread":0.16605703446716003,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4398206046","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99240786,0.0043381304,0.0000048995894,0.00006922193,0.00012006577,0.00029736527,0.0025963543,0.000012092725,0.00015399371],"genre_scores_gemma":[0.99534065,0.0029843063,0.000012190033,0.00074850867,0.000077263896,0.00002818636,0.00073254603,0.000023153341,0.00005321802],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99907297,0.000093556446,0.00016379757,0.0003741228,0.000049498838,0.00024608505],"domain_scores_gemma":[0.9994966,0.000087231434,0.000057279227,0.00023887718,0.0000019954334,0.00011801034],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000061121915,0.00025992,0.00025035284,0.00003158683,0.00015171952,0.000028411601,0.00012601292,0.000091001595,0.0000067080364],"category_scores_gemma":[0.0000048370116,0.00019265065,0.00006829486,0.00003340054,0.0008740697,0.0000043092023,0.00024173543,0.00014451511,0.0000033874078],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005871302,0.000119363554,0.0029152418,0.00014903018,0.000065022585,0.000013319776,0.000064776104,0.0000024170758,0.9937894,0.00022086076,0.00058144337,0.0014919959],"study_design_scores_gemma":[0.002766655,0.0017082123,0.13045335,0.0002776216,0.00043950434,0.0003284846,0.00068337127,0.000019698684,0.8284597,0.00019986284,0.033680156,0.0009833782],"about_ca_topic_score_codex":0.000035351604,"about_ca_topic_score_gemma":0.000017757928,"teacher_disagreement_score":0.1653297,"about_ca_system_score_codex":0.000010496182,"about_ca_system_score_gemma":0.000014703239,"threshold_uncertainty_score":0.7856065},"labels":[],"label_agreement":null},{"id":"W4399140245","doi":"10.1128/aem.00861-24","title":"Is the persistence of <i>Listeria monocytogenes</i> in food processing facilities and its resistance to pathogen intervention linked to its phylogeny?","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"China Scholarship Council; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Listeria monocytogenes; Biology; Virulence; Lineage (genetic); Pathogen; Listeria; Microbiology; Food microbiology; Foodborne pathogen; Bacteria; Genetics; Gene","score_opus":0.036034373341631856,"score_gpt":0.2556130803925972,"score_spread":0.21957870705096538,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399140245","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98708725,0.011321828,0.00009739794,0.00022866087,0.00007344994,0.00041601423,0.00065127906,0.0000060826783,0.00011802187],"genre_scores_gemma":[0.9983592,0.00036101224,0.0001899897,0.0005125157,0.000038104263,0.00008303064,0.00010432198,0.0000171413,0.00033467603],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989801,0.00004080322,0.0002535142,0.0004897751,0.000032770047,0.00020303713],"domain_scores_gemma":[0.9997223,0.000011300792,0.000040935927,0.0001706283,0.000005079569,0.00004975659],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013979572,0.00017248545,0.00016973812,0.000042452484,0.000059211223,0.00002117863,0.00015632276,0.00012788974,0.000010153616],"category_scores_gemma":[0.0000054548223,0.00014472463,0.00004544737,0.00006241963,0.00011230547,0.000005477483,0.0004279875,0.00005824909,0.000006937558],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015584318,0.000020405332,0.00019274249,0.00016057982,0.000030376747,0.0000011538601,0.0009923818,0.000008482275,0.9954379,0.000041070347,0.000049582857,0.0029094482],"study_design_scores_gemma":[0.000368788,0.00037984733,0.00295478,0.0000762846,0.00001991119,0.000036610225,0.0013146589,0.000011320622,0.9410236,0.000046639416,0.053510193,0.00025738066],"about_ca_topic_score_codex":0.000001979598,"about_ca_topic_score_gemma":0.000035948433,"teacher_disagreement_score":0.054414347,"about_ca_system_score_codex":0.000028327358,"about_ca_system_score_gemma":0.0000109374705,"threshold_uncertainty_score":0.5901699},"labels":[],"label_agreement":null},{"id":"W4399176273","doi":"10.1128/aem.00143-24","title":"Legacy copper/nickel mine tailings potentially harbor novel iron/sulfur cycling microorganisms within highly variable communities","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mine drainage and remediation techniques","field":"Environmental Science","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Carleton University; University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Tailings; Acid mine drainage; Environmental chemistry; Alkalinity; Environmental science; Sulfur; Microbial population biology; Pyrite; Sulfide; Iron bacteria; Geology; Chemistry; Geochemistry; Bacteria","score_opus":0.005298229909229602,"score_gpt":0.18438199263995528,"score_spread":0.17908376273072568,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399176273","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99212486,0.00065830146,0.0036948293,0.00027112296,0.00024465987,0.00035084586,0.00010635602,0.0001866126,0.002362414],"genre_scores_gemma":[0.98503363,0.0002612027,0.011928178,0.0009784878,0.00008502517,0.000038123188,0.00046222843,0.000050944847,0.0011621596],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985761,0.000036351215,0.00039747712,0.00048829,0.00008674905,0.00041500223],"domain_scores_gemma":[0.99944717,0.00007434214,0.00009176255,0.00028410228,0.0000015265477,0.0001010795],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00026166474,0.0003230028,0.00028750222,0.00007309206,0.00026919515,0.0001224225,0.00029338547,0.00023994116,0.0010871543],"category_scores_gemma":[0.0000034269103,0.00028807033,0.00005830856,0.000111883746,0.00071374973,0.0002503983,0.00051327184,0.00033341788,0.0004266269],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014888101,0.00010788445,0.00011578253,0.000030514966,0.00002976873,0.000011329832,0.00092169864,0.00009606498,0.9959499,0.0011569794,0.0009324504,0.0006327257],"study_design_scores_gemma":[0.0009617741,0.0002161205,0.00034575968,0.000056447407,0.00011988444,0.0004136411,0.0035896648,0.0004726055,0.9148272,0.00070553547,0.07738691,0.0009044156],"about_ca_topic_score_codex":0.0003929431,"about_ca_topic_score_gemma":0.000034424287,"teacher_disagreement_score":0.08112267,"about_ca_system_score_codex":0.00013729346,"about_ca_system_score_gemma":0.000012971322,"threshold_uncertainty_score":0.99995714},"labels":[],"label_agreement":null},{"id":"W4399215053","doi":"10.1128/aem.00732-24","title":"From <i>mec</i> cassette to <i>rdhA</i> : a key <i>Dehalobacter</i> genomic neighborhood in a chloroform and dichloromethane–transforming microbial consortium","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Ontario; Genome Canada","keywords":"Dichloromethane; Chloroform; Key (lock); Microbial consortium; Microbiology; Chemistry; Biology; Chromatography; Bacteria; Organic chemistry; Microorganism; Genetics","score_opus":0.004079945866250818,"score_gpt":0.18409060429848623,"score_spread":0.1800106584322354,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399215053","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960387,0.0005266019,0.00006459873,0.0005701578,0.00024964428,0.00055630197,0.0005113053,0.000051167597,0.0014315707],"genre_scores_gemma":[0.9957316,0.00039625083,0.00029544203,0.0027702327,0.00007856985,0.000057746518,0.0005522435,0.000038769227,0.000079173806],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979596,0.000096062264,0.00041438098,0.0008317318,0.0000393462,0.000658881],"domain_scores_gemma":[0.9992872,0.00020393023,0.00005064259,0.0002785678,7.0586424e-7,0.00017898034],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00019364526,0.00039469163,0.0004684502,0.00009527093,0.00018843864,0.00004103011,0.00027709748,0.00033279663,0.0014937541],"category_scores_gemma":[0.0000033672607,0.00038823535,0.000060577466,0.000148066,0.00067173736,0.00012564828,0.000699157,0.00052089506,0.000615532],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013129222,0.000086012165,0.0053149345,0.000016794023,0.00004060755,0.000035719935,0.00240386,0.000014533953,0.9867375,0.00010543593,0.00090044737,0.0042128656],"study_design_scores_gemma":[0.0072420384,0.0014370108,0.12416328,0.00021410346,0.00041340693,0.0020485157,0.0037068673,0.00018434273,0.2667873,0.008756685,0.5806859,0.00436053],"about_ca_topic_score_codex":0.00080140406,"about_ca_topic_score_gemma":0.0013434326,"teacher_disagreement_score":0.7199502,"about_ca_system_score_codex":0.00018921573,"about_ca_system_score_gemma":0.000012646575,"threshold_uncertainty_score":0.99985695},"labels":[],"label_agreement":null},{"id":"W4399366639","doi":"10.1128/aem.00416-24","title":"The catabolism of ethylene glycol by <i>Rhodococcus jostii</i> RHA1 and its dependence on mycofactocin","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial metabolism and enzyme function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Ethylene glycol; Rhodococcus; Catabolism; Chemistry; Bacteria; Microbiology; Biochemistry; Biology; Metabolism; Organic chemistry; Enzyme; Genetics","score_opus":0.0028816468275100295,"score_gpt":0.18131172573659596,"score_spread":0.17843007890908594,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399366639","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97648233,0.022068445,0.00006000406,0.00011914785,0.00023749935,0.00023989491,0.00058501406,0.000008812915,0.00019883967],"genre_scores_gemma":[0.98982793,0.008943277,0.00002076394,0.00036565535,0.000092838854,0.00002584146,0.00032515827,0.00001751013,0.0003810356],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991787,0.000036367834,0.00016583952,0.00037895725,0.000030543637,0.00020956404],"domain_scores_gemma":[0.9997118,0.000040853425,0.00004142634,0.00015321883,0.0000024317965,0.000050259478],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011963598,0.00016761705,0.0001436191,0.000019312849,0.00011539039,0.000014474476,0.00009672013,0.00017515168,0.000018766677],"category_scores_gemma":[0.000006695665,0.00012214831,0.000032179265,0.000028174461,0.000207877,0.0000035204707,0.00013328374,0.00012145154,0.000021505844],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009101982,0.000022358388,0.00003839099,0.000018087801,0.000033232158,6.871328e-7,0.00003983381,0.0000024387577,0.9877873,0.0003856406,0.0055645527,0.0060164253],"study_design_scores_gemma":[0.000269566,0.00011824822,0.00035624387,0.0000066453485,0.000020759515,0.000036306785,0.00006326583,0.0000030644894,0.7400433,0.000042113115,0.2589195,0.000120970246],"about_ca_topic_score_codex":0.000012172527,"about_ca_topic_score_gemma":0.0000054078123,"teacher_disagreement_score":0.25335497,"about_ca_system_score_codex":0.0000073094125,"about_ca_system_score_gemma":0.000009941959,"threshold_uncertainty_score":0.49810636},"labels":[],"label_agreement":null},{"id":"W4399572547","doi":"10.1128/aem.00108-24","title":"Quantitative morphological analysis of <i>Deinococcus radiodurans</i> elucidates complex dose-dependent nucleoid condensation during recovery from ionizing radiation","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Science Foundation Graduate Research Fellowship Program; Institute of Genetics; Air Force Office of Scientific Research; Uniformed Services University of the Health Sciences; Université Paris-Saclay; U.S. Air Force; Welch Foundation; U.S. Department of Defense; Université Paris-Sud; National Science Foundation","keywords":"Nucleoid; Deinococcus radiodurans; Biology; Cell biology; Population; Biophysics; Deinococcus; Genetics; DNA; Escherichia coli; Gene","score_opus":0.009622256198724938,"score_gpt":0.20745100262864544,"score_spread":0.1978287464299205,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399572547","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9938699,0.0047739083,0.00025788796,0.000033965327,0.00008496513,0.0001390255,0.00075968646,0.0000054847114,0.00007520214],"genre_scores_gemma":[0.99519485,0.0024303047,0.00046238664,0.00006681334,0.000042443735,0.000013832945,0.0017564488,0.000012410208,0.000020531721],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99914396,0.00003757901,0.00022589038,0.00041674695,0.000029077186,0.00014676944],"domain_scores_gemma":[0.9997365,0.00003567473,0.00006693251,0.00012850313,0.0000032268224,0.000029203573],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006815387,0.00014836914,0.00024407235,0.00006891282,0.00007604076,0.000014404248,0.00006788731,0.0001232758,0.000058158086],"category_scores_gemma":[0.000003063733,0.00013627218,0.00008772363,0.00006302781,0.00018149933,0.0000014475422,0.00009562695,0.000057414414,0.000007381077],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010482118,0.000029736077,0.0035128782,0.000008403085,0.000995458,0.0000026278954,0.00015155599,0.00054323394,0.99362683,0.00006381296,0.000026920965,0.0009337244],"study_design_scores_gemma":[0.0006660192,0.00023768804,0.22680663,0.000005380591,0.0005426114,0.00001842169,0.0006625165,0.00028430438,0.76893306,0.00016432155,0.0013877576,0.00029127218],"about_ca_topic_score_codex":0.0000313861,"about_ca_topic_score_gemma":0.000011797442,"teacher_disagreement_score":0.22469375,"about_ca_system_score_codex":0.000022406324,"about_ca_system_score_gemma":0.00000553963,"threshold_uncertainty_score":0.5557018},"labels":[],"label_agreement":null},{"id":"W4399572551","doi":"10.1128/aem.00502-24","title":"Identification of genetic markers of resistance to macrolide class antibiotics in <i>Mannheimia haemolytica</i> isolates from a Saskatchewan feedlot","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Saskatchewan","funders":"Saskatchewan Cattlemen's Association; Ministry of Agriculture - Saskatchewan","keywords":"Bovine respiratory disease; Feedlot; Antibiotic resistance; Biology; Antibiotics; Identification (biology); Microbiology; Antimicrobial; Genetic marker; Antimicrobial stewardship; Gene; Biotechnology; Genetics","score_opus":0.0043221442234781275,"score_gpt":0.20811873765792663,"score_spread":0.2037965934344485,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399572551","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943359,0.003983593,0.00022407588,0.00010584197,0.00013529621,0.0003181303,0.00076348014,0.000016262122,0.000117453674],"genre_scores_gemma":[0.9987757,0.00034507416,0.00013403283,0.00006445478,0.0000108754175,0.0000060911143,0.00027968714,0.0000179736,0.00036609874],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987267,0.00007325474,0.00047685864,0.0004140407,0.000013674716,0.0002954539],"domain_scores_gemma":[0.9995461,0.00011991458,0.00007133931,0.00022246157,0.000005328439,0.000034823446],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015079373,0.00016127949,0.00030005115,0.00017037257,0.00004718799,0.000012819751,0.00012881609,0.00020971785,0.00021021247],"category_scores_gemma":[0.000006094588,0.00015705675,0.00005894056,0.0001458877,0.00045912358,0.000025591184,0.0001394122,0.00016808257,0.00012323183],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002450309,0.00013302032,0.003583892,0.00007060965,0.0000961417,0.0000026548369,0.00044606565,0.000025621926,0.99322575,0.00014661023,0.00046908425,0.001555536],"study_design_scores_gemma":[0.0006227229,0.00010221771,0.029886175,0.00008042396,0.00005992614,0.000022538543,0.0012051134,0.000009682199,0.96316195,0.00031859142,0.0043282816,0.00020240399],"about_ca_topic_score_codex":0.00025817403,"about_ca_topic_score_gemma":0.0003036515,"teacher_disagreement_score":0.03006381,"about_ca_system_score_codex":0.000055766945,"about_ca_system_score_gemma":0.000032195003,"threshold_uncertainty_score":0.6404589},"labels":[],"label_agreement":null},{"id":"W4399630629","doi":"10.1128/aem.00699-24","title":"A CRISPR-Cas-associated transposon system for genome editing in <i>Burkholderia cepacia</i> complex species","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Cystic Fibrosis Canada; University of Manitoba; Research Manitoba","keywords":"Transposase; Biology; CRISPR; Burkholderia cepacia complex; Genome editing; Genetics; Computational biology; Genome; Burkholderia cenocepacia; Transposable element; Insertional mutagenesis; Forward genetics; Transposon mutagenesis; Burkholderia; Cas9; Gene; Bacteria","score_opus":0.006589535812835965,"score_gpt":0.21901209948554365,"score_spread":0.21242256367270768,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399630629","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99147093,0.0019704264,0.0049883346,0.00005212638,0.00020000925,0.00034421711,0.0005150775,0.000030349878,0.0004285354],"genre_scores_gemma":[0.9975065,0.0001815137,0.00026298777,0.00007216785,0.00018808868,0.00005898346,0.0016116184,0.000029178562,0.000088963156],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99912167,0.000013489059,0.0001918338,0.00036722753,0.00002060927,0.00028519836],"domain_scores_gemma":[0.9998228,0.000015405549,0.000021653193,0.000098833676,0.0000015426083,0.000039747185],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009618871,0.00017130024,0.00018351655,0.000040890016,0.00005489662,0.00001801087,0.00007343116,0.00016406701,0.00001525936],"category_scores_gemma":[0.0000017548614,0.0001734638,0.000057715763,0.000034132772,0.00008360298,0.0000019302895,0.00004806379,0.00007614934,0.000005662303],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020888436,0.000022927097,0.0002685235,0.000090292255,0.000042346426,0.0000032850696,0.00016835198,0.00009658883,0.99871796,0.00010193444,0.00015957336,0.00030732932],"study_design_scores_gemma":[0.0013247869,0.00023273734,0.010576854,0.00004715124,0.000052574484,0.00009459917,0.001796785,0.00028859152,0.8920629,0.000024752293,0.09302894,0.00046931583],"about_ca_topic_score_codex":0.0000057986495,"about_ca_topic_score_gemma":0.000022500388,"teacher_disagreement_score":0.10665505,"about_ca_system_score_codex":0.000047125246,"about_ca_system_score_gemma":0.000005871413,"threshold_uncertainty_score":0.7073649},"labels":[],"label_agreement":null},{"id":"W4399857338","doi":"10.1128/aem.00104-24","title":"Comammox <i>Nitrospira</i> among dominant ammonia oxidizers within aquarium biofilter microbial communities","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; McKnight Foundation","keywords":"Nitrospira; Biofilter; Nitrification; Archaea; Environmental chemistry; Heterotroph; Ammonia; Biology; Anammox; Microbial population biology; Alkalinity; Ecology; Chemistry; Bacteria; Nitrite; Denitrification; Nitrate; Environmental science; Environmental engineering; Denitrifying bacteria; Biochemistry; Nitrogen","score_opus":0.004889199147398546,"score_gpt":0.16983672862269572,"score_spread":0.16494752947529717,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399857338","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976317,0.00037068382,0.000024386361,0.000090883164,0.00029315037,0.00026866642,0.00015284316,0.00008289818,0.0010847563],"genre_scores_gemma":[0.9963028,0.0000985222,0.001797279,0.00036565363,0.00005892665,0.000042426524,0.0004674702,0.000048191396,0.00081874133],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99849945,0.00006930789,0.00032961648,0.0005013134,0.00007431502,0.0005260167],"domain_scores_gemma":[0.9994729,0.000050722392,0.00006340299,0.00028661967,5.7831977e-7,0.00012578427],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00015723857,0.0004023589,0.0003221467,0.000060348033,0.00027025506,0.00008558762,0.0002482513,0.00020967543,0.00073960016],"category_scores_gemma":[4.188121e-7,0.00032579427,0.00010326264,0.00008402096,0.0015987726,0.00013533965,0.0004868144,0.00027882683,0.001138288],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058984577,0.00010591531,0.014713583,0.0000142336885,0.000078745055,0.000040459712,0.0011875716,0.000017078235,0.9817619,0.0000720099,0.0011091239,0.00084040355],"study_design_scores_gemma":[0.0019433433,0.00034528333,0.011461043,0.000043700424,0.00021229412,0.00062835123,0.0025127872,0.00015906237,0.93878573,0.00032964282,0.042510774,0.0010679663],"about_ca_topic_score_codex":0.00067541155,"about_ca_topic_score_gemma":0.00023292855,"teacher_disagreement_score":0.04297614,"about_ca_system_score_codex":0.00016741581,"about_ca_system_score_gemma":0.000005525998,"threshold_uncertainty_score":0.9999194},"labels":[],"label_agreement":null},{"id":"W4400119475","doi":"10.1128/aem.00227-24","title":"Development of a logic regression-based approach for the discovery of host- and niche-informative biomarkers in <i>Escherichia coli</i> and their application for microbial source tracking","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Swedish Foundation for International Cooperation in Research and Higher Education","keywords":"Biology; Intergenic region; Computational biology; Range (aeronautics); Host (biology); Escherichia coli; Genetics; Genome; Gene","score_opus":0.012662499063083194,"score_gpt":0.23815728633784491,"score_spread":0.22549478727476172,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400119475","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9688846,0.0013220536,0.028106617,0.00011963377,0.000009748138,0.0013417336,0.00019070433,0.0000048562606,0.00002009517],"genre_scores_gemma":[0.99376625,0.00021873631,0.005221022,0.00015266196,0.0000105574945,0.00029663878,0.00031820853,0.000009690654,0.0000062446875],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99940157,0.000012039205,0.00021786753,0.00019861576,0.000020968035,0.00014894956],"domain_scores_gemma":[0.99948984,0.00034358178,0.000060451803,0.00007273289,0.0000031632899,0.000030250942],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021166405,0.00011603014,0.00021786193,0.00005172845,0.000050570798,0.000009508233,0.00003961301,0.000081653874,0.0000015455399],"category_scores_gemma":[0.0000068967424,0.00006873647,0.000031428142,0.000044279837,0.0002919527,0.000033302404,0.000050726834,0.00006664352,1.5743188e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005778087,0.00008193871,0.0016621917,0.0005238487,0.00008175076,8.1646895e-8,0.0011401925,0.0000028624802,0.98266965,0.000051052233,0.000034116372,0.013174505],"study_design_scores_gemma":[0.0030933474,0.00030653187,0.014188219,0.00014733082,0.000071958515,0.000016060387,0.005121932,0.0029257592,0.9682969,0.00004774408,0.005598282,0.00018597777],"about_ca_topic_score_codex":0.0000068424238,"about_ca_topic_score_gemma":0.0000032864812,"teacher_disagreement_score":0.024881681,"about_ca_system_score_codex":0.000027198004,"about_ca_system_score_gemma":0.000033710083,"threshold_uncertainty_score":0.2802992},"labels":[],"label_agreement":null},{"id":"W4400248061","doi":"10.1128/aem.01014-24","title":"Expansion of Auxiliary Activity Family 5 sequence space via biochemical characterization of six new copper radical oxidases","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Electrocatalysts for Energy Conversion","field":"Energy","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Deutsche Forschungsgemeinschaft; Genome British Columbia; Genome Canada","keywords":"Biochemistry; Pichia pastoris; Alcohol oxidase; Galactose oxidase; Biology; Enzyme; Chemistry; Recombinant DNA; Gene","score_opus":0.00611535354664646,"score_gpt":0.1892020566359027,"score_spread":0.18308670308925623,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400248061","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998809,0.00030764125,0.00043566528,0.00007930097,0.00007483366,0.0000879296,0.00002733271,0.000032069733,0.00014623477],"genre_scores_gemma":[0.99866164,0.00031950514,0.00016772108,0.00006627181,0.00003831963,0.0000047335193,0.0006266607,0.000020139722,0.00009503176],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991965,0.000028235709,0.00018898428,0.00033861925,0.00006209828,0.00018552928],"domain_scores_gemma":[0.999668,0.00004678228,0.000065371074,0.00015520143,0.000002322515,0.000062322106],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000057293753,0.00016248706,0.00024100656,0.000065848915,0.000027991115,0.0000036658964,0.00009031654,0.00020463832,0.00007435886],"category_scores_gemma":[0.000002572037,0.00014912522,0.000053542823,0.000079302736,0.00035545594,0.00006327619,0.000107420325,0.00012053322,0.000023913097],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009279572,0.00005294333,0.00008798291,0.000044041342,0.00004015511,0.0000029844905,0.000070422466,0.00000625798,0.98698723,0.0007283578,0.00011866122,0.011768158],"study_design_scores_gemma":[0.00027922145,0.00009183955,0.001482598,0.000026135895,0.000032027394,0.000036052857,0.000021949416,0.00008366637,0.9941727,0.00008765016,0.0035496894,0.00013648185],"about_ca_topic_score_codex":0.00021149963,"about_ca_topic_score_gemma":0.000003004584,"teacher_disagreement_score":0.011631676,"about_ca_system_score_codex":0.00007969359,"about_ca_system_score_gemma":0.000031179236,"threshold_uncertainty_score":0.608115},"labels":[],"label_agreement":null},{"id":"W4400584503","doi":"10.1128/aem.00598-24","title":"Activated sludge microbial community assembly: the role of influent microbial community immigration","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Génome Québec; Natural Sciences and Engineering Research Council of Canada; Faculty of Engineering, McGill University; McGill University","keywords":"Microbial population biology; Wastewater; Activated sludge; Sewage treatment; Biomass (ecology); Ecology; Sewage; Community structure; Microbial ecology; Environmental science; Biology; Environmental engineering; Bacteria","score_opus":0.006068236020986565,"score_gpt":0.1949952468493967,"score_spread":0.18892701082841012,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400584503","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99655133,0.00023399161,0.000018760275,0.00018227848,0.00016142856,0.0004026827,0.0002185869,0.000053720436,0.0021772017],"genre_scores_gemma":[0.9980207,0.00012742133,0.00007385495,0.0006879152,0.000034634188,0.000026680054,0.0009245389,0.000027420678,0.00007682452],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976444,0.0012119242,0.00041153916,0.00027755884,0.000045696757,0.00040887165],"domain_scores_gemma":[0.9986961,0.00050379615,0.00013068119,0.0006007718,0.0000025426468,0.000066092114],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007064026,0.00032039863,0.00036358798,0.000054639964,0.0010608998,0.000028038226,0.00063805486,0.0003486487,0.0011657794],"category_scores_gemma":[0.000008101413,0.0002547711,0.00010590592,0.00015173412,0.0018661419,0.00010774193,0.0012448439,0.0015862344,0.00029606197],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009994863,0.00031310663,0.0012688116,0.000022364668,0.00008151568,7.8945976e-7,0.0033833003,0.000043757216,0.9893196,0.00029028216,0.0016410851,0.0035354132],"study_design_scores_gemma":[0.0006535615,0.0003795928,0.024222117,0.00002518151,0.0001010958,0.0001647906,0.004325156,0.000040936346,0.87912863,0.002471469,0.08799957,0.00048789624],"about_ca_topic_score_codex":0.0023230498,"about_ca_topic_score_gemma":0.0013112032,"teacher_disagreement_score":0.11019099,"about_ca_system_score_codex":0.00015791324,"about_ca_system_score_gemma":0.000015063991,"threshold_uncertainty_score":0.99999046},"labels":[],"label_agreement":null},{"id":"W4400685962","doi":"10.1128/aem.00354-24","title":"Evolutionary genomic analyses of canine <i>E. coli</i> infections identify a relic capsular locus associated with resistance to multiple classes of antimicrobials","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph","funders":"U.S. Food and Drug Administration; Washington State University","keywords":"Biology; Locus (genetics); Antibiotic resistance; Microbiology; Antimicrobial; Genetics; Computational biology; Bacteria; Gene","score_opus":0.00955755529476201,"score_gpt":0.2522757574771927,"score_spread":0.2427182021824307,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400685962","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99494624,0.0038842843,0.00016786219,0.000059588194,0.000028654084,0.0002700969,0.0005129693,0.000009110299,0.000121188015],"genre_scores_gemma":[0.99788314,0.0010932016,0.00029787517,0.00007138722,0.000022581235,0.000039655188,0.00037082186,0.00001854217,0.00020276707],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991426,0.000050861796,0.00022428883,0.000337779,0.00004223242,0.00020223005],"domain_scores_gemma":[0.99966383,0.00005044386,0.000068692934,0.00015834275,0.000014113898,0.00004460025],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009519079,0.00014516956,0.00024438286,0.00007218369,0.0000739717,0.000006299537,0.000087497596,0.00010697638,0.000011450839],"category_scores_gemma":[0.000026471818,0.00012728006,0.00004888547,0.00013441803,0.00039821514,0.0000032813762,0.00018150955,0.0000778067,0.0000034577247],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000082367376,0.00010779956,0.005462662,0.00004857758,0.0003457457,0.0000023793523,0.00004687916,0.00022193395,0.99199504,0.000019268125,0.0016421309,0.00002524178],"study_design_scores_gemma":[0.0005684984,0.00037544963,0.042092044,0.00006275797,0.0000986536,0.000016371245,0.00015084213,0.000010847735,0.9490136,0.00001743124,0.00737999,0.00021351338],"about_ca_topic_score_codex":0.000071085604,"about_ca_topic_score_gemma":0.0002755274,"teacher_disagreement_score":0.042981412,"about_ca_system_score_codex":0.000047685156,"about_ca_system_score_gemma":0.000047408812,"threshold_uncertainty_score":0.519033},"labels":[],"label_agreement":null},{"id":"W4401125594","doi":"10.1128/aem.00845-24","title":"Dual bacteriocin and extracellular vesicle-mediated inhibition of <i>Campylobacter jejuni</i> by the potential probiotic candidate <i>Ligilactobacillus salivarius</i> UO.C249","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Bacteriocin; Microbiology; Campylobacter jejuni; Biology; Lactobacillus salivarius; Antimicrobial; Probiotic; Bacteria","score_opus":0.0035412947285373485,"score_gpt":0.15534199802710072,"score_spread":0.15180070329856338,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401125594","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948268,0.0027987896,0.000009449663,0.0009048384,0.00014038767,0.00031830784,0.00084376684,0.000041829415,0.000115853465],"genre_scores_gemma":[0.9962471,0.001009415,0.00001635237,0.00062674197,0.00010537607,0.000019014657,0.0018629256,0.0000043322966,0.000108745524],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985407,0.00013322233,0.00036794675,0.0005218171,0.000052809177,0.00038353188],"domain_scores_gemma":[0.99950355,0.00021548675,0.00010209847,0.00008258328,0.0000034823427,0.00009279208],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002515581,0.00026471753,0.0003167686,0.000015181082,0.00015689337,0.000043980494,0.00010382336,0.00025563664,0.00021762194],"category_scores_gemma":[0.0000043060277,0.00011090303,0.00006709295,0.00009540422,0.00064652745,0.00006596854,0.00017374342,0.00021731586,0.00003948765],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004383807,0.000064967535,0.0014273305,0.000017864073,0.000043859476,0.0000091739,0.00008097556,6.0609653e-7,0.9884268,0.00016436227,0.00071338104,0.009006828],"study_design_scores_gemma":[0.002445043,0.0020172053,0.18274665,0.00015278203,0.0004956027,0.002554614,0.0028938174,0.00016218175,0.5113371,0.0018737661,0.2911552,0.00216608],"about_ca_topic_score_codex":0.00011399189,"about_ca_topic_score_gemma":0.000025238201,"teacher_disagreement_score":0.47708973,"about_ca_system_score_codex":0.00003156389,"about_ca_system_score_gemma":0.000005193372,"threshold_uncertainty_score":0.4522494},"labels":[],"label_agreement":null},{"id":"W4402311663","doi":"10.1128/aem.01317-24","title":"Prophylactic phage biocontrol prevents <i>Burkholderia gladioli</i> infection in a quantitative <i>ex planta</i> model of bacterial virulence","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Virulence; Burkholderia; Microbiology; Bacteria; Crop; Pathogen; Biological pest control; Phage therapy; Bacteriophage; Horticulture; Agronomy","score_opus":0.01546370902008429,"score_gpt":0.21658514335654894,"score_spread":0.20112143433646465,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402311663","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971433,0.00055679114,0.000010630028,0.000038376038,0.000058412304,0.0003760004,0.0016361866,0.000018895278,0.00016137728],"genre_scores_gemma":[0.998683,0.00078476756,0.000044394277,0.000049053237,0.000032659846,0.000050337912,0.00030910363,0.0000015181731,0.000045180375],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99911827,0.00005538018,0.00020063313,0.00032830733,0.000046075813,0.00025135375],"domain_scores_gemma":[0.9997656,0.00012062311,0.000043776727,0.000031245712,0.000001323861,0.0000374423],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012968677,0.00014703805,0.00022266066,0.000030297204,0.000057188045,0.000017668879,0.000081920654,0.00009418911,0.000068074296],"category_scores_gemma":[0.0000039830265,0.000067437824,0.000036807553,0.00009110962,0.00022597032,0.00007711318,0.000107246466,0.00012659095,0.00002724121],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015608736,0.000087506276,0.00047668617,0.000037571277,0.000023150991,0.000004155106,0.0001472989,0.00001958999,0.9961499,0.00011428064,0.000059429032,0.0027243204],"study_design_scores_gemma":[0.0016046662,0.0013360883,0.017991703,0.00011851949,0.000070497605,0.000098016,0.0003650099,0.002966731,0.9669936,0.001413608,0.0062732114,0.0007683644],"about_ca_topic_score_codex":0.000110396344,"about_ca_topic_score_gemma":0.00008410331,"teacher_disagreement_score":0.029156338,"about_ca_system_score_codex":0.00003520079,"about_ca_system_score_gemma":0.000005323558,"threshold_uncertainty_score":0.27500346},"labels":[],"label_agreement":null},{"id":"W4403220843","doi":"10.1128/aem.01208-24","title":"Hybrid paper/PDMS microfluidic device integrated with RNA extraction and recombinase polymerase amplification for detection of norovirus in foods","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Biosensors and Analytical Detection","field":"Engineering","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Jewish General Hospital; McGill University","funders":"Fonds de recherche du Québec – Nature et technologies; Génome Québec","keywords":"Norovirus; Recombinase Polymerase Amplification; Murine norovirus; Virology; Loop-mediated isothermal amplification; Acute gastroenteritis; Virus quantification; Nucleic acid; Biology; Polymerase chain reaction; Recombinase; Microbiology; Virus; Food science; DNA","score_opus":0.004433687605188285,"score_gpt":0.179686859452138,"score_spread":0.17525317184694972,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403220843","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9924775,0.002382582,0.004732024,0.000020981828,0.00006963691,0.00018913115,0.000062048945,0.0000380012,0.00002809882],"genre_scores_gemma":[0.9984361,0.0012433765,0.000126988,0.000022936494,0.000015722047,0.000030365283,0.000096543525,0.000017481558,0.000010504447],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999506,0.000009447797,0.00015580501,0.00019788572,0.000013299476,0.000117555996],"domain_scores_gemma":[0.9998591,0.00003944004,0.000017850924,0.000054453736,0.0000014304612,0.000027740696],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000051575462,0.00011346246,0.00012489903,0.0000765614,0.000029585406,0.000011439053,0.000018380133,0.000082463994,0.000008737931],"category_scores_gemma":[0.000001027492,0.00009835759,0.000017247034,0.00005360477,0.0000801406,0.000049605642,0.000007678474,0.000105696265,0.0000029626826],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005632213,0.000020526319,0.00003514355,0.000069165086,0.000020726653,9.605251e-7,0.0000280833,0.000016037213,0.93295014,0.00003759251,0.0000110940355,0.06675422],"study_design_scores_gemma":[0.00039262648,0.00014554485,0.0009464579,0.00002401206,0.00003075217,0.00006577694,0.00013246447,0.0017175623,0.99327487,0.00010152009,0.003040992,0.00012742798],"about_ca_topic_score_codex":0.00004525155,"about_ca_topic_score_gemma":0.000019651688,"teacher_disagreement_score":0.066626795,"about_ca_system_score_codex":0.000049804054,"about_ca_system_score_gemma":0.000002426615,"threshold_uncertainty_score":0.4010906},"labels":[],"label_agreement":null},{"id":"W4404108635","doi":"10.1128/aem.01892-24","title":"Does strain-level persistence of lactobacilli in long-term back-slopped sourdoughs inform on domestication of food-fermenting lactic acid bacteria?","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Technische Universität München; Mitacs; Canada Research Chairs","keywords":"Biology; Strain (injury); Domestication; Persistence (discontinuity); Fermentation; Bacteria; Single-nucleotide polymorphism; Lactic acid; Food microbiology; Food science; Microbiome; Genetics; Genotype; Gene","score_opus":0.017684947065585592,"score_gpt":0.19789016827959807,"score_spread":0.18020522121401247,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404108635","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99858594,0.00018334492,0.000006887072,0.00012917012,0.00009306604,0.00019243374,0.00053910795,0.00000864229,0.0002613787],"genre_scores_gemma":[0.9991397,0.00022560456,0.00006702246,0.00005073017,0.000030209754,0.000007006066,0.00043555166,0.0000017072233,0.000042462932],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991851,0.000017751414,0.00027773203,0.00026704042,0.000043001502,0.0002093739],"domain_scores_gemma":[0.99974954,0.00006970086,0.00008712597,0.00005408217,0.000002588946,0.00003698107],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000102767095,0.00014378288,0.0002002169,0.000026809386,0.00003837492,0.000015217903,0.000113403585,0.00012464031,0.00020102592],"category_scores_gemma":[0.0000028067677,0.000058190235,0.000049142996,0.00008226949,0.00020828127,0.00004678829,0.00008983523,0.00010890395,0.000015439276],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003748143,0.0001031674,0.005713572,0.000058699126,0.000027919112,8.7359894e-7,0.00017607561,8.699562e-7,0.96273035,0.00019680407,0.0000020878235,0.03095212],"study_design_scores_gemma":[0.00049705006,0.0009297005,0.6227853,0.00015235049,0.000036808164,0.00002097672,0.00086682825,0.0000134653665,0.3735427,0.00023305217,0.00061075384,0.00031104707],"about_ca_topic_score_codex":0.0000060636876,"about_ca_topic_score_gemma":0.000027527518,"teacher_disagreement_score":0.6170717,"about_ca_system_score_codex":0.000036277117,"about_ca_system_score_gemma":0.0000039624506,"threshold_uncertainty_score":0.23729289},"labels":[],"label_agreement":null},{"id":"W4404108769","doi":"10.1128/aem.01299-24","title":"Adaptive immunity in <i>Mus musculus</i> influences the acquisition and abundance of <i>Borrelia burgdorferi</i> in <i>Ixodes scapularis</i> ticks","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; University of Saskatchewan","keywords":"Ixodes scapularis; Borrelia burgdorferi; Biology; Tick; Lyme disease; Spirochaetaceae; Ixodidae; Ixodes; Borrelia; Nymph; Borrelia Burgdorferi Infection; Virology; Microbiology; Immunology; Antibody; Zoology","score_opus":0.0040983032599985975,"score_gpt":0.18954591737405396,"score_spread":0.18544761411405536,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404108769","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9771163,0.021818047,0.000020413152,0.000080598846,0.00016817125,0.00032501054,0.00016468485,0.000026753743,0.0002800418],"genre_scores_gemma":[0.99768865,0.0016886503,0.000016043909,0.00034285945,0.000012925446,0.00006347405,0.00014636197,0.000015152097,0.00002589856],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987897,0.00016773418,0.0003300876,0.000391471,0.00001711123,0.00030387074],"domain_scores_gemma":[0.9995036,0.00022255634,0.00006865741,0.00018416061,0.0000029635512,0.000018053895],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022324144,0.00022339022,0.000315155,0.0001075498,0.00010275292,0.000014578834,0.0001379711,0.00023612031,0.00007160699],"category_scores_gemma":[0.000005532864,0.00017229399,0.000044550638,0.00013234907,0.0012304588,0.00007657401,0.00019552221,0.0003648823,0.00003786382],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012305887,0.00014009647,0.029512094,0.000034579913,0.00007109646,0.0000066128664,0.00083581073,0.00003315094,0.9655799,0.0006725417,0.00009140073,0.002899601],"study_design_scores_gemma":[0.0040919124,0.0007790215,0.73390555,0.00032255126,0.0002115514,0.00065457536,0.0065506194,0.000046550293,0.23871042,0.0032113155,0.0105183255,0.000997593],"about_ca_topic_score_codex":0.0005247322,"about_ca_topic_score_gemma":0.00016085542,"teacher_disagreement_score":0.7268695,"about_ca_system_score_codex":0.000058898488,"about_ca_system_score_gemma":0.000020410771,"threshold_uncertainty_score":0.7025945},"labels":[],"label_agreement":null},{"id":"W4404228448","doi":"10.1128/aem.01528-24","title":"<i>Azotobacter vinelandii</i> N <sub>2</sub> fixation increases in co-culture with the PGPR <i>Bacillus subtilis</i> in a nitrogen concentration-dependent manner","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Azotobacter vinelandii; Bacillus subtilis; Nitrogen fixation; Azotobacter; Bacillaceae; Nitrogen; Microbiology; Bacillales; Biology; Bacteria; Chemistry; Nitrogenase; Genetics","score_opus":0.0027586081250559197,"score_gpt":0.16825018204665132,"score_spread":0.16549157392159541,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404228448","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997949,0.00027921618,0.000009325458,0.00025782548,0.000034074234,0.00045089595,0.0001169327,0.00002056602,0.0008821685],"genre_scores_gemma":[0.99745405,0.00024786827,0.000015006143,0.0012991667,0.00002365863,0.00008499958,0.00081900426,0.000015354764,0.000040913124],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99881124,0.00017609594,0.00021550104,0.00040810768,0.000043315613,0.0003457334],"domain_scores_gemma":[0.9996037,0.00011297307,0.000051239378,0.00018519055,7.7517683e-7,0.000046156878],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019250816,0.00022830353,0.00021567766,0.000031845062,0.00015116532,0.000024417519,0.00018071335,0.00020830735,0.00048400136],"category_scores_gemma":[0.0000019573079,0.00015477884,0.000030044092,0.000116377,0.0006562168,0.0000978725,0.00017418792,0.00041569155,0.0002585636],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010760213,0.00011877507,0.053204678,0.000009013034,0.000020217909,0.000018740711,0.0007688459,0.00013738556,0.94340974,0.000080561425,0.0014790527,0.00064540113],"study_design_scores_gemma":[0.0070136404,0.0011025597,0.38812557,0.00011131284,0.00016819977,0.00093701127,0.003986746,0.00025901032,0.4783292,0.0031283775,0.11475337,0.002084998],"about_ca_topic_score_codex":0.00021619082,"about_ca_topic_score_gemma":0.0026483608,"teacher_disagreement_score":0.46508053,"about_ca_system_score_codex":0.00016080299,"about_ca_system_score_gemma":0.000009731466,"threshold_uncertainty_score":0.6311698},"labels":[],"label_agreement":null},{"id":"W4404590388","doi":"10.1128/aem.01281-24","title":"Variability in cadmium tolerance of closely related <i>Listeria monocytogenes</i> isolates originating from dairy processing environments","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Centre for Disease Control","funders":"Oregon State University; Utah State University","keywords":"Listeria monocytogenes; Biology; Cadmium; Microbiology; Listeria; Bacteria; Food science; Genetics; Chemistry","score_opus":0.012896095327392464,"score_gpt":0.24069911299129104,"score_spread":0.22780301766389857,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404590388","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951921,0.0031575994,0.0004936149,0.00003108709,0.00019938145,0.00025701596,0.00027371605,0.00001333179,0.00038213955],"genre_scores_gemma":[0.9974079,0.00045041594,0.00095614477,0.00011903471,0.000065453285,0.00003553517,0.0008646145,0.000035412595,0.000065472894],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99841356,0.000090569585,0.00045924445,0.00072860386,0.000035680296,0.00027235298],"domain_scores_gemma":[0.9995332,0.00003387662,0.000102106205,0.00028101966,0.0000015157767,0.000048300713],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00024116819,0.00025244727,0.0002827727,0.00003808401,0.000051839907,0.000016259419,0.00016738017,0.00030895157,0.000036558984],"category_scores_gemma":[0.0000055574496,0.0002513468,0.00005145863,0.00005715333,0.00032414883,0.000010270308,0.00034668445,0.00013865747,0.000009603168],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010964716,0.000071448485,0.008133415,0.00005571812,0.00004786459,0.0000037984755,0.00023365876,0.000107320455,0.98524004,0.0000308856,0.000013112258,0.0059531024],"study_design_scores_gemma":[0.0009000195,0.00013716197,0.0069697406,0.000055658616,0.0000423024,0.000052920244,0.00017007934,0.00043092069,0.96918887,0.00045685747,0.021176653,0.00041881955],"about_ca_topic_score_codex":0.000027011085,"about_ca_topic_score_gemma":0.0000062201684,"teacher_disagreement_score":0.021163542,"about_ca_system_score_codex":0.00006898461,"about_ca_system_score_gemma":0.000026423302,"threshold_uncertainty_score":0.99999386},"labels":[],"label_agreement":null},{"id":"W4404591050","doi":"10.1128/aem.01093-24","title":"Inactivation of deposited bioaerosols on food contact surfaces with UV-C light emitting diode devices","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Indoor Air Quality and Microbial Exposure","field":"Environmental Science","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"U.S. Department of Agriculture; National Institute of Food and Agriculture; National Science Foundation","keywords":"Indoor bioaerosol; Optoelectronics; Light-emitting diode; Materials science; Diode; Food science; Chemistry; Environmental chemistry","score_opus":0.005380414550008436,"score_gpt":0.18216567147749665,"score_spread":0.17678525692748823,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404591050","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997155,0.00018587074,0.00008521974,0.00013518738,0.00005775414,0.0002626751,0.000084079584,0.000037065318,0.0019971144],"genre_scores_gemma":[0.99917424,0.000039132126,0.00024665683,0.00029947705,0.000021064878,0.000012757533,0.00012518624,0.000019009136,0.000062499574],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990077,0.000043951186,0.00023284912,0.000413562,0.000059188736,0.00024273661],"domain_scores_gemma":[0.9996564,0.00008154149,0.0000842898,0.00013172996,8.105625e-7,0.00004526315],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001231236,0.00020211306,0.00021913787,0.000033954995,0.00011905277,0.000022918135,0.0001030126,0.00014279896,0.00016501779],"category_scores_gemma":[0.0000017157947,0.00015473104,0.000035591784,0.00009356408,0.00025657914,0.00009219087,0.00010070192,0.00016147028,0.00008956087],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008319578,0.000078550875,0.006744149,0.000036857873,0.000054886943,0.000002992366,0.00061637623,0.000055496665,0.9899317,0.00042173124,0.00010553165,0.0018685354],"study_design_scores_gemma":[0.00049051567,0.0007382045,0.0133908335,0.00007076301,0.000037926548,0.000055708766,0.0005439953,0.000023219127,0.9769964,0.00004266523,0.007330944,0.00027880704],"about_ca_topic_score_codex":0.000074032585,"about_ca_topic_score_gemma":0.00007488182,"teacher_disagreement_score":0.012935278,"about_ca_system_score_codex":0.00008909494,"about_ca_system_score_gemma":0.0000046658774,"threshold_uncertainty_score":0.6309748},"labels":[],"label_agreement":null},{"id":"W4405073788","doi":"10.1128/aem.01759-24","title":"Transcriptional delineation of polysaccharide utilization loci in the human gut commensal <i>Segatella copri</i> DSM18205 and co-culture with exemplar <i>Bacteroides</i> species on dietary plant glycans","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Metabolites in Food Biotechnology","field":"Nursing","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Glycan; Bacteroides; Biology; Bacteroides thetaiotaomicron; Polysaccharide; Microbiome; Microbiology; Computational biology; Commensalism; Transcriptome; Gut microbiome; Genetics; Evolutionary biology; Bacteria; Gene; Biochemistry; Gene expression; Glycoprotein","score_opus":0.018514349478647888,"score_gpt":0.23067153439065138,"score_spread":0.2121571849120035,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405073788","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962994,0.0015063714,0.0000756886,0.0007124331,0.00009471043,0.00036193695,0.0007935135,0.00003124681,0.00012473589],"genre_scores_gemma":[0.9963998,0.00046962898,0.00014430926,0.0012663536,0.000054184562,0.000013719994,0.0016113645,0.000019999166,0.000020605617],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99900085,0.00006826407,0.0002806862,0.00036900231,0.00005864473,0.00022257026],"domain_scores_gemma":[0.99970376,0.000059200553,0.00006245785,0.0001486182,0.0000024591536,0.000023518684],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012665502,0.00022097319,0.00025032656,0.00009816568,0.00012113693,0.000024522484,0.0001241523,0.0002446823,0.000031378557],"category_scores_gemma":[0.0000015013533,0.00015379341,0.000028417573,0.00008498841,0.00064938085,0.00004331373,0.000031702264,0.00032618467,0.000005136732],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026181593,0.00010003695,0.001156323,0.000047972942,0.000032655673,0.0000054739157,0.0012655344,0.00000926625,0.9932706,0.0015812395,0.000614129,0.0016549488],"study_design_scores_gemma":[0.0016707687,0.0010368355,0.011013156,0.000101535676,0.00013187432,0.00051174517,0.002006237,0.000040133214,0.89664733,0.00035248432,0.08607762,0.00041024564],"about_ca_topic_score_codex":0.000026830836,"about_ca_topic_score_gemma":0.000047632897,"teacher_disagreement_score":0.09662324,"about_ca_system_score_codex":0.000047838323,"about_ca_system_score_gemma":0.0000037305074,"threshold_uncertainty_score":0.62715137},"labels":[],"label_agreement":null},{"id":"W4405109426","doi":"10.1128/aem.01426-24","title":"Rapid virucidal activity of an air sanitizer against aerosolized MS2 and Phi6 phage surrogates for non-enveloped and enveloped vertebrate viruses, including SARS-CoV-2","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Infection Control and Ventilation","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Virology; Viral envelope; Aerosolization; Hand sanitizer; Microbiology; Biology; Bacteriophage MS2; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus; Coronavirus disease 2019 (COVID-19); Bacteriophage; Virus; Medicine; Infectious disease (medical specialty); Food science","score_opus":0.022373654436175856,"score_gpt":0.2651773641442496,"score_spread":0.24280370970807372,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405109426","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99765366,0.00031399095,0.00088514056,0.00006375109,0.00010671799,0.0005906681,0.00013873843,0.00003601882,0.00021132843],"genre_scores_gemma":[0.9982205,0.0004179628,0.0004291376,0.0005105571,0.00007018177,0.0000454617,0.00024287168,0.000025757847,0.00003755612],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99912226,0.00003098652,0.00021820542,0.00038826553,0.00003180236,0.00020845907],"domain_scores_gemma":[0.99970615,0.00007855135,0.00006672312,0.00009177771,0.000004547593,0.0000522688],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001781945,0.00020190932,0.00037151348,0.00008536101,0.00013884652,0.000017254024,0.000027331702,0.00015777086,0.000021728154],"category_scores_gemma":[0.0000048626052,0.00017597074,0.00004417032,0.000042774565,0.00026768673,0.00011149016,0.00007880417,0.00012183442,0.0000058588475],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004939886,0.000086166336,0.0012378638,0.00012600042,0.000112690075,0.0000035361406,0.0002939932,5.8510955e-7,0.98097926,0.000055183606,0.000034447898,0.016576255],"study_design_scores_gemma":[0.004411483,0.00035565844,0.013509272,0.000041764248,0.00013736975,0.000089340116,0.00012707496,0.0023766027,0.9757233,0.00005377583,0.0029513028,0.00022303773],"about_ca_topic_score_codex":0.000018450031,"about_ca_topic_score_gemma":0.000015541624,"teacher_disagreement_score":0.016353216,"about_ca_system_score_codex":0.000037209942,"about_ca_system_score_gemma":0.000016278475,"threshold_uncertainty_score":0.7175879},"labels":[],"label_agreement":null},{"id":"W4405921084","doi":"10.1128/aem.01725-24","title":"Genomic and metabolic characterization of <i>Trueperella pyogenes</i> isolated from domestic and wild animals","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Diphtheria, Corynebacterium, and Tetanus","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"North Dakota State University","keywords":"Biology; Microbiology; Computational biology; Biotechnology","score_opus":0.0025415386268977888,"score_gpt":0.16860772521079598,"score_spread":0.16606618658389818,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405921084","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9902111,0.008949531,0.000106446845,0.000022128794,0.00007696972,0.00014051628,0.00042275718,0.000009438043,0.00006110753],"genre_scores_gemma":[0.99208957,0.006607349,0.000082465864,0.00013851155,0.000068507456,0.00000957235,0.0009265341,0.00002315389,0.00005434721],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992767,0.000022644059,0.00016303685,0.00038104563,0.000015259182,0.00014132698],"domain_scores_gemma":[0.9997815,0.000011495314,0.000043456595,0.0001144152,0.0000015483799,0.000047624646],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000041977775,0.00016128558,0.00019973866,0.000027504162,0.000037144317,0.00001888695,0.000048027552,0.00015208186,0.000031071744],"category_scores_gemma":[0.000001024987,0.00014768235,0.000023727502,0.00002076668,0.0002332768,0.0000031775712,0.00012517268,0.000048607635,0.000005481658],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006572236,0.000018791337,0.0019063005,0.000018742221,0.000092137554,0.000002507495,0.00008183409,2.5325733e-7,0.99116415,0.00005571369,0.0000059423946,0.0065879263],"study_design_scores_gemma":[0.00075658434,0.00027001533,0.092396975,0.000015278833,0.00014524341,0.00021714225,0.00007880681,0.000028180186,0.86026496,0.00013415412,0.04534366,0.0003490277],"about_ca_topic_score_codex":0.000011411719,"about_ca_topic_score_gemma":0.0000020169869,"teacher_disagreement_score":0.13089919,"about_ca_system_score_codex":0.000004089654,"about_ca_system_score_gemma":0.0000070946876,"threshold_uncertainty_score":0.60223114},"labels":[],"label_agreement":null},{"id":"W4405944467","doi":"10.1128/aem.01971-24","title":"RecA deletion disrupts protein homeostasis, leading to deamidation, oxidation, and impaired glycolysis in <i>Cronobacter sakazakii</i>","year":2024,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Enterobacteriaceae and Cronobacter Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Deamidation; Cronobacter sakazakii; Glycolysis; Biology; Homeostasis; Microbiology; Chemistry; Biochemistry; Cell biology; Metabolism; Bacteria; Genetics; Enzyme","score_opus":0.004149280983311735,"score_gpt":0.21619651263077697,"score_spread":0.21204723164746522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405944467","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99802846,0.0007720865,0.00032612713,0.0002610506,0.000036416062,0.00044043528,0.00006290329,0.000012911765,0.000059629077],"genre_scores_gemma":[0.997449,0.00053473207,0.00026946818,0.00024044047,0.00005999175,0.0001239872,0.0011077952,0.000023040991,0.00019155863],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99891484,0.000046818128,0.00020165123,0.0005246977,0.000032067583,0.00027991371],"domain_scores_gemma":[0.99972856,0.000008989756,0.000024596318,0.00015328536,0.0000031023403,0.00008148491],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012854101,0.00017178273,0.0001519172,0.00009432429,0.00006753773,0.000063549924,0.00007770604,0.00014657331,0.000038043647],"category_scores_gemma":[0.0000042751417,0.00016511683,0.00002754696,0.00007457771,0.00011167503,0.00001195501,0.00019234973,0.00009061152,0.00004321525],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000088093395,0.00003554002,0.005320858,0.000029972696,0.00003156468,0.0000033330707,0.00012063431,0.0000022440395,0.981372,0.00003734574,0.00019696956,0.012761458],"study_design_scores_gemma":[0.00076353125,0.0003479843,0.03327472,0.000057821457,0.000022216647,0.000079329955,0.00037564785,0.000006745307,0.89911443,0.00006852834,0.06546449,0.0004245509],"about_ca_topic_score_codex":0.000017329436,"about_ca_topic_score_gemma":0.000070211434,"teacher_disagreement_score":0.08225756,"about_ca_system_score_codex":0.000047922258,"about_ca_system_score_gemma":0.00001267244,"threshold_uncertainty_score":0.6733269},"labels":[],"label_agreement":null},{"id":"W4406154191","doi":"10.1128/aem.01507-24","title":"Metagenomics reveals spatial variation in cyanobacterial composition, function, and biosynthetic potential in the Winam Gulf, Lake Victoria, Kenya","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Aquatic Ecosystems and Phytoplankton Dynamics","field":"Environmental Science","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Windsor","funders":"National Institute of Environmental Health Sciences; National Institutes of Health; Kenya Marine and Fisheries Research Institute; King's College London; University of Wisconsin-Milwaukee; Arizona State University; University of Wisconsin-Madison; Florida Gulf Coast University; University of Windsor; George Mason University; Bowling Green State University; National Science Foundation","keywords":"Microcystis; Metagenomics; Cyanobacteria; Biology; Algal bloom; Bloom; Ecology; Gene; Genetics; Bacteria; Phytoplankton; Nutrient","score_opus":0.0019284646364157313,"score_gpt":0.15787838781446153,"score_spread":0.1559499231780458,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406154191","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99693125,0.000034060584,0.0016364995,0.00015722773,0.00025732958,0.0003891454,0.000083868086,0.0000060055577,0.0005046029],"genre_scores_gemma":[0.9992132,0.000056085642,0.000110483656,0.00034736897,0.000046006066,0.000028949873,0.00016519109,0.000006703111,0.000025976286],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99903506,0.000109023575,0.00029767095,0.0003240583,0.00003977507,0.00019443115],"domain_scores_gemma":[0.9996987,0.000055929297,0.00007716451,0.00014445324,5.4930564e-7,0.00002318294],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028235704,0.0001498727,0.00020007846,0.0000445126,0.00010830411,0.000024480174,0.00010754747,0.00013322146,0.00022223582],"category_scores_gemma":[0.000001907369,0.00012376961,0.000020269961,0.00007342607,0.00018439577,0.000044098088,0.00012917606,0.0001182055,0.000030043146],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009410197,0.00012467708,0.06611404,0.000011488291,0.000017291663,0.0000024132466,0.0004532525,0.0003173756,0.9305981,0.0012672909,0.000045686305,0.0009543032],"study_design_scores_gemma":[0.0012469101,0.0000691958,0.98981726,0.000011644764,0.000043076012,0.000028649074,0.00017302761,0.0004674882,0.00041762443,0.0032753611,0.0042468305,0.00020294015],"about_ca_topic_score_codex":0.0002502953,"about_ca_topic_score_gemma":0.0013367273,"teacher_disagreement_score":0.93018043,"about_ca_system_score_codex":0.00008468577,"about_ca_system_score_gemma":0.000003946915,"threshold_uncertainty_score":0.5047178},"labels":[],"label_agreement":null},{"id":"W4406393093","doi":"10.1128/aem.01143-24","title":"Quorum sensing regulates virulence factors in the coral pathogen <i>Vibrio coralliilyticus</i>","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Coral and Marine Ecosystems Studies","field":"Environmental Science","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"IONICS Mass Spectrometry (Canada)","funders":"United States - Israel Binational Science Foundation; National Science Foundation","keywords":"Virulence; Quorum sensing; Pathogen; Biology; Microbiology; Coral; Vibrio; Bacteria; Genetics; Ecology; Gene","score_opus":0.003963132426066702,"score_gpt":0.1685139644990999,"score_spread":0.1645508320730332,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406393093","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99529773,0.00015129465,0.000022648526,0.0003517425,0.00010521768,0.00029667228,0.000033405202,0.000016976444,0.003724311],"genre_scores_gemma":[0.9984,0.00012172973,0.00008560923,0.0008748819,0.00001276704,0.000010474713,0.000066103945,0.0000068511895,0.0004216051],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998965,0.00005305772,0.00021817959,0.00038453986,0.000045687135,0.00033353778],"domain_scores_gemma":[0.9996443,0.00008776133,0.000053718937,0.00018562937,4.733984e-7,0.000028117685],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001426554,0.00020128433,0.0002225003,0.00002793366,0.00019867918,0.000018754587,0.00017393129,0.000083790255,0.00008779806],"category_scores_gemma":[0.0000035264225,0.00013640933,0.000037036145,0.000106567764,0.00043185725,0.00004468928,0.00051445735,0.00013905443,0.000082401544],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017425495,0.00004982459,0.21778132,0.000007346567,0.000011472663,0.0000054082648,0.00043375356,0.000012100276,0.77648664,0.00020917313,0.0013408706,0.0036446534],"study_design_scores_gemma":[0.0009706773,0.000118875585,0.8749707,0.000030497116,0.000050648356,0.000075476084,0.0045690136,0.000098784534,0.018094065,0.0021990752,0.09825428,0.0005679496],"about_ca_topic_score_codex":0.00031121302,"about_ca_topic_score_gemma":0.000332499,"teacher_disagreement_score":0.7583926,"about_ca_system_score_codex":0.00008817136,"about_ca_system_score_gemma":0.0000029106466,"threshold_uncertainty_score":0.5562611},"labels":[],"label_agreement":null},{"id":"W4407137266","doi":"10.1128/aem.02265-24","title":"The impact of wild-boar-derived microbiota transplantation on piglet microbiota, metabolite profile, and gut proinflammatory cytokine production differs from sow-derived microbiota","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; University of Calgary; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Animal and Plant Health Inspection Service; Alberta Livestock and Meat Agency; University of Saskatchewan","keywords":"Biology; Lactobacillus; Microbiology; Gut flora; Feces; Immune system; Colonisation resistance; Metabolite; Transplantation; Colonization; Immunology; Food science; Fermentation; Internal medicine; Biochemistry","score_opus":0.0029217939550639583,"score_gpt":0.2041354618250548,"score_spread":0.20121366786999084,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407137266","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943845,0.0024091676,0.00004617071,0.00029984003,0.00020796862,0.0011509054,0.0013730953,0.000019270687,0.00010904077],"genre_scores_gemma":[0.9905583,0.005191805,0.0003767578,0.00027503612,0.0001020914,0.0000536374,0.003179492,0.000042695232,0.00022013075],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99778485,0.00014626654,0.00055211125,0.00093711074,0.000041515657,0.00053815683],"domain_scores_gemma":[0.9990743,0.000045856268,0.0002716573,0.0004969601,0.000016278833,0.0000949749],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001804594,0.0005100175,0.0005002671,0.000106623156,0.00042054473,0.000036069585,0.00023749543,0.00041324907,0.000019774252],"category_scores_gemma":[0.000008176869,0.0003893864,0.00015396274,0.000089016874,0.0009112608,0.000010022365,0.00017980284,0.0002677296,0.000011241318],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009630722,0.00017568398,0.0025436329,0.00008379255,0.0003450981,0.0000014235698,0.00018887967,0.000009787712,0.9931555,0.000031406576,0.0008960223,0.0016057276],"study_design_scores_gemma":[0.0016659341,0.00025382906,0.17572999,0.000043604334,0.00010695534,0.00005873005,0.00017341533,0.0000018013575,0.8185383,0.000028220344,0.0030717626,0.00032743887],"about_ca_topic_score_codex":0.00012490276,"about_ca_topic_score_gemma":0.000039630493,"teacher_disagreement_score":0.17461716,"about_ca_system_score_codex":0.00007944331,"about_ca_system_score_gemma":0.00007314868,"threshold_uncertainty_score":0.9998558},"labels":[],"label_agreement":null},{"id":"W4407154189","doi":"10.1128/aem.02062-24","title":"Antimicrobial peptide DiPGLa-H exhibits the most outstanding anti-infective activity among the PGLa variants based on a systematic comparison","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Sichuan Agricultural University; National Natural Science Foundation of China","keywords":"Antimicrobial; Acinetobacter baumannii; Escherichia coli; Microbiology; Bacteria; Biology; Membrane permeability; Staphylococcus aureus; Antimicrobial peptides; Multidrug tolerance; Biofilm; Biochemistry; Membrane","score_opus":0.00567748867358108,"score_gpt":0.19759245026801164,"score_spread":0.19191496159443056,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407154189","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939398,0.00034203954,0.00091981975,0.0005190872,0.00053993746,0.0013785622,0.00023044646,0.000065581335,0.0020647373],"genre_scores_gemma":[0.99751306,0.00006659207,0.000017050032,0.0015079692,0.00003427295,0.00008787622,0.00016275333,0.00002877368,0.0005816638],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99782085,0.0004408759,0.00044553858,0.00064126076,0.000033207605,0.00061825337],"domain_scores_gemma":[0.99834996,0.0008111456,0.0003003213,0.00050488586,0.0000075497114,0.000026151807],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00043076734,0.00048466775,0.00077843945,0.00011880961,0.0011857281,0.00007561415,0.00038764538,0.00036633693,0.00009194704],"category_scores_gemma":[0.000025573698,0.00029046158,0.0001567994,0.00015851967,0.0017320772,0.00007470396,0.00032387362,0.0006944777,0.00012289813],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017611413,0.00033045802,0.009836357,0.00028571612,0.00032818815,0.0000030483207,0.00041752285,0.00020156268,0.9846578,0.00078405853,0.002680334,0.0002988149],"study_design_scores_gemma":[0.0067782733,0.00048466615,0.16915911,0.0020397848,0.0010754653,0.00023312682,0.0065208,0.00056989625,0.80756867,0.00020029285,0.003737327,0.0016325813],"about_ca_topic_score_codex":0.00013207213,"about_ca_topic_score_gemma":0.000041772833,"teacher_disagreement_score":0.17708915,"about_ca_system_score_codex":0.00013128543,"about_ca_system_score_gemma":0.000036147565,"threshold_uncertainty_score":0.99995476},"labels":[],"label_agreement":null},{"id":"W4407223807","doi":"10.1128/aem.02036-24","title":"Bumble bee gut microbial community structure differs between species and commercial suppliers, but metabolic potential remains largely consistent","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant and animal studies","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Pollinator; Gut flora; Phylotype; Metagenomics; Ecology; Taxon; Range (aeronautics); Zoology; Phylogenetics; Pollination; Genetics; Pollen; Gene","score_opus":0.013041280424802515,"score_gpt":0.16940917794432764,"score_spread":0.15636789751952512,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407223807","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953036,0.0007649909,0.0000014597557,0.00062049367,0.000053132277,0.00021572472,0.002690192,0.000025322175,0.00032513466],"genre_scores_gemma":[0.9975428,0.0006802538,0.00003829459,0.0005904169,0.00013717309,0.0000057832563,0.0008404276,0.0000016221622,0.00016320737],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99901336,0.00009220397,0.00020866453,0.0002988139,0.000036631754,0.0003503188],"domain_scores_gemma":[0.999708,0.00012433258,0.000063400046,0.000034999168,0.0000029242701,0.00006633689],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000072718925,0.00024744248,0.00041995378,0.000017421879,0.0008703411,0.000038367663,0.00016959615,0.00018865097,0.00010540387],"category_scores_gemma":[0.0000029567013,0.00012212923,0.000060866787,0.000054753542,0.00068252406,0.000026563233,0.00047850536,0.00029798297,0.000006258849],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049118335,0.00004669466,0.07118004,0.000007493296,0.00008814741,0.0000014775513,0.00006526889,1.4563916e-7,0.92400867,0.00022390914,0.00069294655,0.0036361082],"study_design_scores_gemma":[0.0004807562,0.00007889089,0.9513053,0.0000064537953,0.00009142769,0.00002164939,0.0010701602,2.956734e-7,0.024258533,0.00028555302,0.022173323,0.00022762762],"about_ca_topic_score_codex":0.00018455066,"about_ca_topic_score_gemma":0.0008392073,"teacher_disagreement_score":0.8997501,"about_ca_system_score_codex":0.000022186861,"about_ca_system_score_gemma":0.0000028206211,"threshold_uncertainty_score":0.66940475},"labels":[],"label_agreement":null},{"id":"W4407239181","doi":"10.1128/aem.01909-24","title":"Retrospective analysis of antimicrobial resistance associated with bovine respiratory disease","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Beef Cattle Research Council","keywords":"Metagenomics; Bovine respiratory disease; Antibiotic resistance; Pasteurella multocida; Biology; Feedlot; Biotechnology; Beef cattle; Antimicrobial; Livestock; Tylosin; Antibiotics; Microbiology; Bacteria; Gene; Genetics; Ecology","score_opus":0.004612929121283256,"score_gpt":0.20888615645714623,"score_spread":0.20427322733586298,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407239181","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99575293,0.001274099,0.000096431984,0.00008093371,0.000065115695,0.00027915457,0.0012114409,0.00003120189,0.0012086977],"genre_scores_gemma":[0.9969906,0.00010261078,0.00001385691,0.00030950495,0.0000053168833,0.00002475862,0.0012112951,0.000011344851,0.001330695],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987084,0.00011955438,0.0002925371,0.00049350545,0.00001664967,0.0003693362],"domain_scores_gemma":[0.9994385,0.00007810818,0.00012740062,0.0002943548,0.000016807462,0.000044829056],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017351875,0.00020979911,0.0004939116,0.0003945141,0.00024252482,0.000009350362,0.0001281677,0.00019170667,0.00041873852],"category_scores_gemma":[0.000021454802,0.0001810921,0.00011291482,0.0005287091,0.0010557921,0.00003125273,0.00014660397,0.00020653897,0.000018889861],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054844783,0.00034485036,0.06755358,0.000020927593,0.0021467572,0.0000034946174,0.000044032753,0.00001383059,0.9259903,0.0020187,0.0011878147,0.00012727173],"study_design_scores_gemma":[0.0046015447,0.00022928661,0.8200436,0.00010769515,0.003245264,0.000004528371,0.00024455975,0.0000041856683,0.15209481,0.00023023358,0.01856266,0.0006315848],"about_ca_topic_score_codex":0.00002772695,"about_ca_topic_score_gemma":0.00014152704,"teacher_disagreement_score":0.7738955,"about_ca_system_score_codex":0.00012621302,"about_ca_system_score_gemma":0.0000565508,"threshold_uncertainty_score":0.73847216},"labels":[],"label_agreement":null},{"id":"W4407528366","doi":"10.1128/aem.01501-24","title":"Deciphering reductive dehalogenase specificity through targeted mutagenesis of chloroalkane reductases","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Ontario; University of Wisconsin-Madison","keywords":"Chemistry; Saturated mutagenesis; Dehalogenase; Active site; Stereochemistry; Substrate (aquarium); Residue (chemistry); Mutagenesis; Protein engineering; Enzyme; Biochemistry; Directed evolution; Mutant; Biology","score_opus":0.0052376987647856695,"score_gpt":0.19110249007960967,"score_spread":0.185864791314824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407528366","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953642,0.00027406635,0.00009297779,0.00008651704,0.0001360187,0.00025789696,0.00019173496,0.000020155048,0.0035764498],"genre_scores_gemma":[0.9973797,0.00036419556,0.0015195209,0.00029960548,0.000018890578,0.00000737108,0.0001687487,0.000009697782,0.00023224586],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99890316,0.000034936707,0.00030018075,0.00044980113,0.00004722149,0.00026471892],"domain_scores_gemma":[0.99961,0.000034469613,0.00011065581,0.00019520358,0.0000013581173,0.00004830772],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00008844895,0.00019842344,0.00025662244,0.000029118675,0.000106532025,0.0000064094415,0.00015329447,0.00014009613,0.0018505023],"category_scores_gemma":[0.000006499734,0.00018011632,0.000049300885,0.00013266629,0.00079024903,0.000053540556,0.00027299585,0.00008919661,0.000102985854],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006696257,0.00012944198,0.0063398,0.000007947016,0.000031336484,0.0000019244185,0.00019900396,0.000028782086,0.98951095,0.000104300416,0.00094025984,0.0026393072],"study_design_scores_gemma":[0.0004649015,0.000040679206,0.031554755,0.0000064183428,0.000026635156,0.000014988059,0.000517128,0.000003538729,0.95781153,0.00023231521,0.009138665,0.00018846158],"about_ca_topic_score_codex":0.0000994461,"about_ca_topic_score_gemma":0.00001864585,"teacher_disagreement_score":0.03169942,"about_ca_system_score_codex":0.00011831623,"about_ca_system_score_gemma":0.0000066872117,"threshold_uncertainty_score":0.99906194},"labels":[],"label_agreement":null},{"id":"W4407913415","doi":"10.1128/aem.01950-24","title":"Minimal changes in microbial abundances and diversity over 7 years of emplacement for modules of compacted bentonite exposed to natural groundwater","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Radioactive element chemistry and processing","field":"Chemistry","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"The Scarborough Hospital; Nuclear Waste Management Organization; University of Toronto; University of Waterloo; McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Ontario Research Foundation","keywords":"Bentonite; Microbial population biology; Groundwater; Environmental science; Organic matter; Environmental chemistry; Geology; Ecology; Chemistry; Geotechnical engineering; Biology","score_opus":0.006714650865932381,"score_gpt":0.2077180526270996,"score_spread":0.20100340176116724,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407913415","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993011,0.00023808,0.000011519518,0.000032287306,0.000022546956,0.00010917688,0.0002050687,0.0000032962846,0.000076931385],"genre_scores_gemma":[0.9992768,0.000047517333,0.00030806352,0.00006976321,0.000011737372,0.000009019104,0.00018949246,0.000004021602,0.000083552295],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994762,0.0000053585845,0.00014042534,0.000212762,0.00002069254,0.0001445918],"domain_scores_gemma":[0.9998041,0.000045973575,0.00006472383,0.000059321595,0.000002109338,0.000023772378],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000042583175,0.00010338723,0.00020311696,0.00003943834,0.00005204545,0.000004839939,0.00007043638,0.00007056518,0.00006039194],"category_scores_gemma":[0.0000016767004,0.00010710724,0.000019300536,0.000026476926,0.00018144879,0.000021095899,0.00018128965,0.000055251774,1.3920452e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038583248,0.00008411719,0.019125672,0.00018147603,0.00005158068,3.0367627e-7,0.0005904505,0.0000026882399,0.9769762,0.000013674597,0.000034437402,0.0025535594],"study_design_scores_gemma":[0.0013453232,0.00003878171,0.018746048,0.000038617305,0.000021976279,0.000001718474,0.0006455752,0.00000553068,0.9780451,0.000032764852,0.0009776745,0.00010087532],"about_ca_topic_score_codex":0.000016527625,"about_ca_topic_score_gemma":0.00002448391,"teacher_disagreement_score":0.0024526839,"about_ca_system_score_codex":0.000039757786,"about_ca_system_score_gemma":0.000003893284,"threshold_uncertainty_score":0.43677065},"labels":[],"label_agreement":null},{"id":"W4408027175","doi":"10.1128/aem.01876-24","title":"CARPDM: cost-effective antibiotic resistome profiling of metagenomic samples using targeted enrichment","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Advanced Research; McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Resistome; Metagenomics; Antibiotic resistance; Biology; Computational biology; Antibiotics; Gene; Drug resistance; Genetics; Biotechnology","score_opus":0.006672114468913449,"score_gpt":0.22405814976504965,"score_spread":0.2173860352961362,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408027175","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99600357,0.0016044879,0.0010983002,0.000009385766,0.00010532851,0.0008340961,0.00014402522,0.000008554273,0.00019223771],"genre_scores_gemma":[0.99564755,0.00027915684,0.0034530973,0.0001013487,0.000027664471,0.000014817669,0.00039108188,0.000019755098,0.000065508895],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99898183,0.00005768314,0.00025675565,0.00043643996,0.000024444735,0.00024281556],"domain_scores_gemma":[0.999582,0.00002452571,0.000118512304,0.00023749616,0.0000046678106,0.00003282871],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011626739,0.0001927791,0.00028903375,0.000058976646,0.00008272707,0.0000067765513,0.000119996446,0.00017997071,0.0000084111125],"category_scores_gemma":[0.000007517246,0.00018493462,0.000058134818,0.000048871134,0.00039283975,0.000002258959,0.00020238807,0.00007064074,0.0000030139408],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012454357,0.0000584445,0.030685646,0.000047132613,0.0001562772,8.1298583e-7,0.000019105297,0.00003534666,0.96782947,0.00018960724,0.000031851923,0.00082178175],"study_design_scores_gemma":[0.00054263393,0.00007681466,0.040720105,0.000014462581,0.000072033676,0.000010457352,0.00020047868,0.000006099561,0.9557288,0.00003798002,0.002420412,0.00016967826],"about_ca_topic_score_codex":0.00001531917,"about_ca_topic_score_gemma":0.0000035937667,"teacher_disagreement_score":0.012100606,"about_ca_system_score_codex":0.000057331497,"about_ca_system_score_gemma":0.0000244497,"threshold_uncertainty_score":0.75414145},"labels":[],"label_agreement":null},{"id":"W4408152709","doi":"10.1128/aem.01829-24","title":"Large-scale phenotypic and genomic analysis of <i>Listeria monocytogenes</i> reveals diversity in the sensitivity to quaternary ammonium compounds but not to peracetic acid","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"National Institute of General Medical Sciences; Mejeribrugets ForskningsFond; Oregon State University; Foundation for Research Levy on Agricultural Products; Karl Pedersens og Hustrus Industrifond","keywords":"Listeria monocytogenes; Peracetic acid; Ammonium; Microbiology; Biology; Listeria; Bacteria; Chemistry; Genetics; Biochemistry; Organic chemistry","score_opus":0.017897194306278123,"score_gpt":0.25157112219252453,"score_spread":0.2336739278862464,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408152709","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979267,0.00019720776,0.00063214125,0.00021354711,0.000059941427,0.00035467104,0.0005235317,0.0000034161749,0.000088849774],"genre_scores_gemma":[0.99597573,0.000103627004,0.00045752243,0.003047101,0.000020709413,0.000017435956,0.00031946678,0.000008540787,0.00004988411],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99884474,0.00013177763,0.00023830151,0.0005016042,0.000034412355,0.000249144],"domain_scores_gemma":[0.9994949,0.000026481115,0.000058175436,0.0003635495,0.000003834838,0.000053047752],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029136383,0.00018753036,0.0003468457,0.00010326722,0.00013583712,0.000011415787,0.0001885288,0.00014209167,0.0000048294],"category_scores_gemma":[0.0000030095566,0.0001675724,0.00006152925,0.0001243113,0.00016426486,0.0000027811573,0.001581111,0.000064549735,0.000003486001],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005141873,0.000068674235,0.061805286,0.000013333041,0.00017899652,0.0000020844705,0.00076029496,0.00009569967,0.9362878,0.000020885502,0.00004723113,0.00020548061],"study_design_scores_gemma":[0.0007616193,0.00015817517,0.42431745,0.000005425145,0.0002644789,0.000020825644,0.001463328,0.000026719295,0.5706956,0.000019722636,0.0020172468,0.00024940862],"about_ca_topic_score_codex":0.00007491318,"about_ca_topic_score_gemma":0.00021513166,"teacher_disagreement_score":0.36559224,"about_ca_system_score_codex":0.000041187068,"about_ca_system_score_gemma":0.0000074263685,"threshold_uncertainty_score":0.68334043},"labels":[],"label_agreement":null},{"id":"W4408334661","doi":"10.1128/aem.02085-24","title":"Evolving a plant-beneficial bacterium in soil vs. nutrient-rich liquid culture has contrasting effects on in-soil fitness","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"The Scarborough Hospital; University of Toronto","funders":"National Institute of Food and Agriculture","keywords":"Biology; Soil water; Microbial inoculant; Population; Nutrient; Experimental evolution; Soil microbiology; Ecology; Agronomy; Bacteria; Genetics","score_opus":0.0025087513186544327,"score_gpt":0.1781179619922659,"score_spread":0.17560921067361146,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408334661","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99798554,0.0006748066,0.00014873566,0.000118835924,0.00015297346,0.00024498458,0.00007109991,0.0000075062662,0.0005955317],"genre_scores_gemma":[0.99767184,0.00031872423,0.00006452242,0.0008277965,0.00006543167,0.000040319286,0.000853136,0.000012605273,0.00014559789],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998928,0.000048200618,0.0002230223,0.00045065887,0.000026738353,0.00032338456],"domain_scores_gemma":[0.99973637,0.000026860922,0.000052021485,0.00014276046,0.0000026058613,0.000039374878],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000084953936,0.00020834523,0.00022862999,0.00007308922,0.000083211045,0.000014605318,0.00010930657,0.00030818305,0.000009115501],"category_scores_gemma":[0.000010941037,0.00020364282,0.000033506552,0.00006287665,0.0001449107,0.0000022931479,0.00015679837,0.00016848558,0.0000068209342],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003848761,0.00012800623,0.006139884,0.000038294078,0.0000206432,0.0000046934397,0.00011529655,0.00021049402,0.99212295,0.0001727069,0.00021318087,0.00044896346],"study_design_scores_gemma":[0.007454625,0.0011686985,0.096125305,0.00016990701,0.000042496915,0.000060473038,0.0007175129,0.00062613905,0.877034,0.00019235947,0.015554102,0.00085437327],"about_ca_topic_score_codex":0.000016505692,"about_ca_topic_score_gemma":0.0001632606,"teacher_disagreement_score":0.115088955,"about_ca_system_score_codex":0.00005379638,"about_ca_system_score_gemma":0.000022561093,"threshold_uncertainty_score":0.8304313},"labels":[],"label_agreement":null},{"id":"W4408907571","doi":"10.1128/aem.02527-24","title":"The evaluation of biogenic silica in brackish and freshwater strains reveals links between phylogeny and silica accumulation in picocyanobacteria","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Geochemistry and Elemental Analysis","field":"Earth and Planetary Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Allison University","funders":"Uppsala Multidisciplinary Center for Advanced Computational Science; Science for Life Laboratory; Svenska Forskningsrådet Formas; Knut och Alice Wallenbergs Stiftelse; Anna-Greta Crafoords Stiftelse för Reumatologisk Forskning","keywords":"Brackish water; Phytoplankton; Synechococcus; Diatom; Cyanobacteria; Biogenic silica; Biology; Environmental chemistry; Ecology; Algae; Chemistry; Bacteria; Salinity; Paleontology; Nutrient","score_opus":0.014540209182863905,"score_gpt":0.23389860164850299,"score_spread":0.21935839246563907,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408907571","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987289,0.00061980146,6.945032e-7,0.00011832115,0.000010306758,0.00016519589,0.00018715955,0.0000017238684,0.00016791387],"genre_scores_gemma":[0.9989794,0.0002671489,0.00002155331,0.00005964285,0.000008829709,0.000003270746,0.0006450433,0.0000010061269,0.000014120662],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99934345,0.00006369277,0.00021304897,0.00020909472,0.000032287953,0.00013844192],"domain_scores_gemma":[0.9997788,0.00007455573,0.000048943522,0.00007401448,0.0000017041991,0.000021963686],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003583961,0.00008520203,0.00014039624,0.000041660223,0.000070903996,0.000011662525,0.000052658597,0.000116155126,0.00012865463],"category_scores_gemma":[0.000004715974,0.000064179985,0.000013263644,0.00006204762,0.00020678295,0.000027422742,0.000033338667,0.00008752763,0.0000020077546],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011282839,0.000006914902,0.55807656,0.000006176853,0.000013192541,9.402513e-8,0.00006419698,0.000040301344,0.42060268,0.000003737145,0.0000032281093,0.02117162],"study_design_scores_gemma":[0.00045358067,0.000022320168,0.98666453,0.000005126096,0.000035059795,0.0000016314979,0.00027993682,0.00038239668,0.011019029,0.00086943636,0.0002024046,0.0000645481],"about_ca_topic_score_codex":0.00024259406,"about_ca_topic_score_gemma":0.0030524423,"teacher_disagreement_score":0.42858797,"about_ca_system_score_codex":0.000007894998,"about_ca_system_score_gemma":0.0000053406216,"threshold_uncertainty_score":0.26171836},"labels":[],"label_agreement":null},{"id":"W4409282365","doi":"10.1128/aem.02253-24","title":"Polymer biodegradation by <i>Halanaerobium</i> promotes reservoir souring during hydraulic fracturing","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Produced water; Thiosulfate; Oil shale; Extreme environment; Hydraulic fracturing; Microbial mat; Biodegradation; Metagenomics; Environmental science; Geology; Environmental chemistry; Chemistry; Ecology; Sulfur; Biology; Environmental engineering; Petroleum engineering; Bacteria; Biochemistry","score_opus":0.0026297891095542155,"score_gpt":0.169977555970019,"score_spread":0.1673477668604648,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409282365","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99273574,0.001026107,0.00005900961,0.0003733202,0.00007594077,0.0002500053,0.000027062202,0.000043279044,0.0054095443],"genre_scores_gemma":[0.9964867,0.00027103347,0.00015990286,0.00047002104,0.000018959883,0.000028568276,0.00019051298,0.00001848471,0.002355819],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987158,0.000040757815,0.0002534213,0.00053626037,0.000052114992,0.0004016202],"domain_scores_gemma":[0.9995896,0.00003245949,0.00008207911,0.0002173325,4.029364e-7,0.000078085555],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010461383,0.00023967202,0.00021046451,0.000048340393,0.00029242766,0.000022978811,0.00017102962,0.00018564712,0.0006418086],"category_scores_gemma":[0.0000017517402,0.00020955845,0.000039059873,0.00010316949,0.0003053367,0.000078742276,0.00038995684,0.00023345395,0.00018411128],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022199369,0.00006617666,0.008002662,0.000012840142,0.00003335342,0.0000017238337,0.00012904579,0.00009537705,0.98987335,0.000030424093,0.0006227325,0.0011100878],"study_design_scores_gemma":[0.00091419386,0.00003778328,0.008369292,0.000017979633,0.00003689397,0.000026582338,0.00019565891,0.000051410476,0.97315633,0.00030419262,0.016526977,0.0003626994],"about_ca_topic_score_codex":0.00012553373,"about_ca_topic_score_gemma":0.000006332541,"teacher_disagreement_score":0.016717039,"about_ca_system_score_codex":0.000112772934,"about_ca_system_score_gemma":0.0000026427267,"threshold_uncertainty_score":0.85455453},"labels":[],"label_agreement":null},{"id":"W4409333233","doi":"10.1128/aem.02356-24","title":"Approaches for inactivating highly pathogenic avian influenza H5N1 cattle isolate for safe containment level 2 laboratory practices","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Influenza A virus subtype H5N1; Influenza A virus; Biology; Infectious dose; Microbiology; Veterinary medicine; Virology; Virus; Medicine","score_opus":0.08453892323659787,"score_gpt":0.3253273523197455,"score_spread":0.24078842908314765,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409333233","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99081814,0.002538306,0.0011276534,0.0009039294,0.00008688239,0.0026211108,0.0010810067,0.000031907977,0.0007910801],"genre_scores_gemma":[0.9900343,0.00018571036,0.0051053097,0.0029852702,0.00007784981,0.00094790506,0.00027389213,0.000027819726,0.00036198716],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99869186,0.000035843535,0.00031017401,0.0004711774,0.0000467409,0.00044421718],"domain_scores_gemma":[0.9991327,0.0003798037,0.00020448293,0.00020138753,0.000012332881,0.00006930918],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031798295,0.00023412773,0.00040063786,0.000089806344,0.00031184472,0.000015916867,0.00008780648,0.0001748163,0.000013611887],"category_scores_gemma":[0.000094001836,0.00020349112,0.00006631827,0.000056830562,0.0003387873,0.000055793796,0.00017699662,0.0001849156,0.000011326517],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010294807,0.00018954415,0.006684707,0.00026581078,0.00037305616,9.592605e-7,0.0003215943,0.000006865749,0.9816156,0.0015737684,0.0005403931,0.0073982226],"study_design_scores_gemma":[0.016676279,0.0015614303,0.08543809,0.00012549023,0.000601367,0.000030352088,0.008725617,0.0001387058,0.33354387,0.0010009533,0.55127895,0.0008789433],"about_ca_topic_score_codex":0.000020306223,"about_ca_topic_score_gemma":0.000008877848,"teacher_disagreement_score":0.64807177,"about_ca_system_score_codex":0.0002393451,"about_ca_system_score_gemma":0.00007889903,"threshold_uncertainty_score":0.82981265},"labels":[],"label_agreement":null},{"id":"W4409768387","doi":"10.1128/aem.00010-25","title":"Population and pan-genomic analyses of <i>Staphylococcus pseudintermedius</i> identify geographic distinctions in accessory gene content and novel loci associated with AMR","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph","funders":"U.S. Food and Drug Administration; U.S. Department of Agriculture","keywords":"Staphylococcus pseudintermedius; Biology; Genetics; Genome; Context (archaeology); Population; Mobile genetic elements; Pathogenicity island; Genomic island; Gene; Antibiotic resistance; Staphylococcus; Staphylococcus aureus; Antibiotics; Bacteria","score_opus":0.02082238177551975,"score_gpt":0.2645176399357477,"score_spread":0.2436952581602279,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409768387","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99800193,0.00088997366,0.00027625455,0.0000763918,0.000033150744,0.00043623758,0.00020417765,0.000012412271,0.00006947146],"genre_scores_gemma":[0.9986127,0.00047351103,0.0001399641,0.00020623537,0.000010686367,0.000025778454,0.0004698833,0.000013319585,0.000047933394],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99898016,0.000024144347,0.00034920807,0.0003898076,0.00003825605,0.00021840185],"domain_scores_gemma":[0.9995677,0.000080203456,0.00016157486,0.00013399677,0.000007301165,0.000049220194],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009567028,0.00019561646,0.00046280565,0.00020669309,0.00008217181,0.000011213437,0.00004964848,0.00014642054,0.000009057494],"category_scores_gemma":[0.0000117350655,0.00016725439,0.000038076105,0.00013289333,0.00074194354,0.000034098433,0.00011425533,0.00015574935,4.6377517e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001567479,0.00011522358,0.38170177,0.000033174794,0.0001179271,0.0000025168622,0.000029477604,0.0000023007065,0.6174744,0.000039370385,0.000012358727,0.00031476637],"study_design_scores_gemma":[0.002410173,0.00009242486,0.95663494,0.000086167274,0.00020750266,0.000019085446,0.00032296008,0.000008348554,0.039974257,0.000060252063,0.000046498877,0.00013740154],"about_ca_topic_score_codex":0.0002600952,"about_ca_topic_score_gemma":0.00027613319,"teacher_disagreement_score":0.5775001,"about_ca_system_score_codex":0.000076086624,"about_ca_system_score_gemma":0.000011824883,"threshold_uncertainty_score":0.6820436},"labels":[],"label_agreement":null},{"id":"W4410237955","doi":"10.1128/aem.02369-24","title":"Longitudinal and cross-sectional sampling and whole genome sequencing of <i>Campylobacter</i> in a chicken abattoir reveal highly dynamic population structure","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; Simon Fraser University; McGill University; University of British Columbia","funders":"Genome Canada","keywords":"Campylobacter; Biology; Campylobacter jejuni; Multilocus sequence typing; Population; Antibiotic resistance; Genotyping; Campylobacter coli; Typing; Locus (genetics); Genome; Genetics; Veterinary medicine; Microbiology; Genotype; Antibiotics; Bacteria; Gene; Environmental health","score_opus":0.010193847388168786,"score_gpt":0.21998084135228144,"score_spread":0.20978699396411266,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410237955","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987917,0.0005759666,0.00000532957,0.00007835709,0.000048776674,0.00015005945,0.00030861923,0.0000091855245,0.00003200769],"genre_scores_gemma":[0.99865836,0.00013520353,0.00012805944,0.00016943054,0.000026985394,0.000005661257,0.00085220917,0.0000012023008,0.000022864502],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99902505,0.000043836822,0.00028987066,0.00040679774,0.000022726668,0.00021171765],"domain_scores_gemma":[0.99971366,0.00011605789,0.000091274174,0.000040255243,0.000002384167,0.000036390058],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013089682,0.00014915493,0.0002618443,0.000026815116,0.00011360316,0.000015634092,0.00006527498,0.00020130785,0.000021321597],"category_scores_gemma":[0.0000045554575,0.00008062567,0.000023481743,0.000064775486,0.0002581399,0.00004196625,0.00013500745,0.0001344912,7.7306464e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022568038,0.0000068972413,0.4762312,0.000007652521,0.0000070937404,3.911606e-7,0.000017409035,0.000009117009,0.52244747,0.000054827677,4.14099e-7,0.0011949816],"study_design_scores_gemma":[0.00026027276,0.000055714307,0.99703026,0.000008651935,0.000007690406,0.000066051936,0.00009223069,0.000012098318,0.00081479247,0.0013341842,0.00020139106,0.00011665181],"about_ca_topic_score_codex":0.0002447788,"about_ca_topic_score_gemma":0.00028418834,"teacher_disagreement_score":0.5216327,"about_ca_system_score_codex":0.000058745834,"about_ca_system_score_gemma":0.0000028446134,"threshold_uncertainty_score":0.32878196},"labels":[],"label_agreement":null},{"id":"W4410304918","doi":"10.1128/aem.00336-25","title":"Ecological mechanisms of microbial assembly in clonal plant <i>Glechoma longituba</i> : from soil to endosphere","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Science North","funders":"National Natural Science Foundation of China","keywords":"Biology; Ecology; Ecosystem; Adaptability; Metagenomics; Microbial population biology; Host (biology); Plant community; Ecological succession","score_opus":0.0034483832319595715,"score_gpt":0.15778102621260892,"score_spread":0.15433264298064936,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410304918","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9932916,0.00011383423,0.000030526367,0.00029707386,0.00015340539,0.00021331216,0.0043583424,0.000013228642,0.0015286597],"genre_scores_gemma":[0.9955879,0.00015703001,0.00022626319,0.0009806248,0.000032896376,0.000021952137,0.0028926425,8.7323184e-7,0.00009980542],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99912095,0.0000376112,0.0002406905,0.0003383589,0.000026860444,0.00023555242],"domain_scores_gemma":[0.99935865,0.0004955366,0.000046788507,0.000043860222,0.0000016857745,0.00005348735],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000059931324,0.00014833688,0.0002481911,0.00001709479,0.00006761977,0.000010849576,0.00014897724,0.00018050303,0.0016504877],"category_scores_gemma":[0.000006091131,0.00007280086,0.000047301888,0.00008443914,0.00002776071,0.00001962765,0.00015589247,0.0001364264,0.00011458301],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001292706,0.0001661643,0.008425075,0.0000023673101,0.000016346665,0.000005120411,0.00002258541,0.000011023347,0.984649,0.0015720829,0.0013547841,0.0036461947],"study_design_scores_gemma":[0.0005497417,0.00048406806,0.10925723,0.00006422636,0.000039846844,0.00007014498,0.0006166312,0.000031065178,0.82290876,0.0061000264,0.059392937,0.00048530492],"about_ca_topic_score_codex":0.0006124571,"about_ca_topic_score_gemma":0.00086250005,"teacher_disagreement_score":0.16174021,"about_ca_system_score_codex":0.0000293632,"about_ca_system_score_gemma":0.0000042159436,"threshold_uncertainty_score":0.99926215},"labels":[],"label_agreement":null},{"id":"W4410860663","doi":"10.1128/aem.00301-25","title":"An experimental test of the influence of microbial manipulation on sugar kelp ( <i>Saccharina latissima</i> ) supports the core influences host function hypothesis","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Marine and coastal plant biology","field":"Earth and Planetary Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Kelp; Biology; Microbiome; Laminaria digitata; Ecology; Sporophyte; Mutualism (biology); Saccharina; Host (biology); Symbiosis; Algae; Bacteria; Botany; Laminaria","score_opus":0.007107022365278498,"score_gpt":0.175840376536226,"score_spread":0.1687333541709475,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410860663","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99818146,0.0000798538,0.0000014807802,0.00005562085,0.000075017444,0.00020785353,0.00023519357,0.000005662064,0.0011578507],"genre_scores_gemma":[0.9990787,0.000039702187,0.000016618042,0.00056447316,0.000015044518,0.0000026281682,0.00016767654,0.000002003965,0.00011316024],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99933815,0.000036547295,0.0002197681,0.00022223154,0.000038091315,0.00014519901],"domain_scores_gemma":[0.9995151,0.00015582283,0.00012833427,0.00017694579,0.000002688298,0.000021100435],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000081566504,0.00012720113,0.00015397184,0.00002740343,0.00013576921,0.0000070422325,0.00018597982,0.0000941543,0.00020816932],"category_scores_gemma":[0.0000044014264,0.00007504427,0.000031624826,0.00006517732,0.00046901254,0.000042045034,0.00005026208,0.000090906346,0.000008093891],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007320062,0.000038648323,0.33758643,0.0000060117936,0.000009309116,2.5923754e-7,0.00004532378,0.00022605907,0.6586398,0.00006651363,0.000038751186,0.0032696913],"study_design_scores_gemma":[0.00019813479,0.00028149746,0.86192584,0.000009187739,0.000019606712,0.000013914824,0.00025797563,0.000023054981,0.13595423,0.00016935702,0.0010656749,0.00008151855],"about_ca_topic_score_codex":0.00088310067,"about_ca_topic_score_gemma":0.00037571313,"teacher_disagreement_score":0.5243394,"about_ca_system_score_codex":0.0000041350186,"about_ca_system_score_gemma":0.000011310328,"threshold_uncertainty_score":0.30602166},"labels":[],"label_agreement":null},{"id":"W4411060638","doi":"10.1128/aem.00348-25","title":"Identification of circulating human papillomavirus types through high-throughput sequencing of Canadian municipal and institutional wastewater samples","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Population; Amplicon; Human papillomavirus; Cervical cancer; Biology; Medicine; Oncology; Virology; Cancer; Environmental health; Internal medicine; Genetics; Polymerase chain reaction; Gene","score_opus":0.026050222794456904,"score_gpt":0.2669522093948453,"score_spread":0.24090198660038842,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411060638","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99688727,0.0006297136,0.000016971819,0.00008783535,0.00002137477,0.00014903703,0.0000905448,0.0000031803468,0.002114097],"genre_scores_gemma":[0.999185,0.00023634937,0.00019204243,0.00011850077,0.000015477703,0.0000076182355,0.00019967194,0.0000041718417,0.00004112381],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99943864,0.000013140713,0.00021195711,0.00017106769,0.00003118854,0.00013402525],"domain_scores_gemma":[0.99979705,0.000022043041,0.000038904975,0.00009996435,0.000004908186,0.00003715951],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000746138,0.00006994817,0.00018489636,0.00010340515,0.00010058405,0.0000032845187,0.00003650339,0.00007783288,0.00015919369],"category_scores_gemma":[0.000003856794,0.000061891405,0.00001782472,0.00006689768,0.00047006717,0.000020863592,0.00006443284,0.00007959995,0.0000017710606],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002532323,0.000017411538,0.00581894,0.00009904875,0.00004583087,0.0000012525247,0.00035869156,0.000011343026,0.9828308,0.008770614,0.000008738147,0.0020119597],"study_design_scores_gemma":[0.0017180571,0.00012020076,0.31187335,0.00004312985,0.00010501026,0.000044567707,0.0014131134,0.000030106823,0.6788776,0.0028708582,0.0027572217,0.0001467909],"about_ca_topic_score_codex":0.023500854,"about_ca_topic_score_gemma":0.002903607,"teacher_disagreement_score":0.3060544,"about_ca_system_score_codex":0.000093255854,"about_ca_system_score_gemma":0.000041487383,"threshold_uncertainty_score":0.9830017},"labels":[],"label_agreement":null},{"id":"W4412111026","doi":"10.1128/aem.00183-25","title":"Practical media formulations for rapid growth of <i>Lactobacillus iners</i> and other vaginal bacteria","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; University Health Network; University of Toronto","funders":"","keywords":"Biology; Gardnerella vaginalis; Lactobacillus; Microbiology; Bacterial vaginosis; Lactobacillus crispatus; Microbiome; Lactobacillus gasseri; Bacteria; Bioinformatics; Genetics","score_opus":0.014224085971735943,"score_gpt":0.25916123731259566,"score_spread":0.24493715134085972,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412111026","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994568,0.00058635225,0.0016995647,0.00054157595,0.0001980599,0.0005587306,0.00038386096,0.00001906616,0.0014447893],"genre_scores_gemma":[0.9980726,0.00014658306,0.0009968727,0.00019465855,0.000017458562,0.00007073315,0.00028553657,0.000010386259,0.00020512218],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991402,0.000059196682,0.00021646873,0.00033652506,0.000009581969,0.00023799799],"domain_scores_gemma":[0.99936956,0.0003852931,0.0000648522,0.000152972,0.00000947387,0.000017834487],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017745812,0.00013908438,0.00024008672,0.000113877555,0.00013254966,0.000005997615,0.000059703776,0.00020486327,0.00020288485],"category_scores_gemma":[0.00004505068,0.00012187369,0.000035087618,0.000057510562,0.00082221354,0.000045475503,0.00011133286,0.00016923381,0.000020890442],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002170882,0.00015421698,0.005269388,0.000025793948,0.0001512787,1.6984296e-7,0.000121435674,2.1879637e-7,0.9791114,0.011727705,0.0007692783,0.0024520776],"study_design_scores_gemma":[0.004216917,0.00039539544,0.06196514,0.000015777045,0.00014959631,0.0002530003,0.0005763309,0.000002687521,0.7775655,0.0028728242,0.15166171,0.00032513842],"about_ca_topic_score_codex":0.000020336432,"about_ca_topic_score_gemma":0.0000047711496,"teacher_disagreement_score":0.20154586,"about_ca_system_score_codex":0.000029693194,"about_ca_system_score_gemma":0.000023369656,"threshold_uncertainty_score":0.49698648},"labels":[],"label_agreement":null},{"id":"W4412902904","doi":"10.1128/aem.00678-25","title":"Evaluation of <i>Staphylococcus simulans</i> inhibition of <i>Staphylococcus aureus</i> infection by an <i>in vivo</i> murine mastitis model","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Staphylococcus aureus; Mastitis; Microbiology; Biology; In vivo; Superinfection; Staphylococcal infections; Pathogen; In vitro; Micrococcaceae; Immunology; Bacteria; Genetics; Virus","score_opus":0.011060119520420117,"score_gpt":0.21678848102505904,"score_spread":0.2057283615046389,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412902904","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970363,0.00031958005,0.00012378822,0.000063057174,0.000047942078,0.00039978683,0.00084106077,0.000013469415,0.001155021],"genre_scores_gemma":[0.9985981,0.00032568333,0.000049006776,0.00028236094,0.000020237809,0.00004298787,0.00065045984,0.0000014080906,0.000029742932],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99887085,0.0001309487,0.00036966885,0.00033763103,0.00010194561,0.0001889356],"domain_scores_gemma":[0.9996757,0.00006131372,0.00013273413,0.00007877941,0.0000147748615,0.0000367308],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004917048,0.0001576508,0.00025750187,0.00003268168,0.00006547706,0.0000057102948,0.00008209116,0.00017992735,0.00016800147],"category_scores_gemma":[0.0000073285187,0.00009344755,0.000046277422,0.00012717205,0.00024148582,0.00006882647,0.00008952325,0.00010037664,0.0000014538374],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000447347,0.00028687826,0.0026702827,0.00002165967,0.00001304116,1.8943919e-7,0.000055696444,0.0018460662,0.98301476,0.00028584295,0.0004823297,0.0112785315],"study_design_scores_gemma":[0.0013602639,0.0002744797,0.006350259,0.000042897398,0.00007526053,0.0000014510954,0.00024315162,0.0021634246,0.98119414,0.0035707152,0.0044681653,0.00025578248],"about_ca_topic_score_codex":0.00029554675,"about_ca_topic_score_gemma":0.0006237637,"teacher_disagreement_score":0.011022749,"about_ca_system_score_codex":0.00004998401,"about_ca_system_score_gemma":0.000009725556,"threshold_uncertainty_score":0.38106805},"labels":[],"label_agreement":null},{"id":"W4413311363","doi":"10.1128/aem.00948-25","title":"Impact of a defined bacterial community including and excluding <i>Megamonas hypermegale</i> on broiler cecal microbiota and resistance to <i>Salmonella</i> infection","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Animal Nutrition and Physiology","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canada Research Chairs; Alberta Innovates; Alberta Agriculture and Forestry","keywords":"Broiler; Salmonella; Microbiology; Biology; Antibiotic resistance; Enterobacteriaceae; Bacteria; Microbiome; Escherichia coli; Antibiotics; Food science; Bioinformatics; Genetics; Gene","score_opus":0.014512550313930441,"score_gpt":0.22144972751068487,"score_spread":0.20693717719675442,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413311363","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987196,0.00013243864,0.0000013714018,0.00016302586,0.000034869303,0.00018007265,0.0001839756,0.000013243407,0.0005714384],"genre_scores_gemma":[0.99891716,0.00030248414,0.000058393347,0.00047445772,0.000031171392,0.000009617987,0.0001704943,0.0000014538452,0.00003477225],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992788,0.0000924392,0.00017271437,0.0002549888,0.000016470241,0.00018458889],"domain_scores_gemma":[0.9996546,0.00017745617,0.00005595213,0.000049108745,0.0000032379419,0.000059650913],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000919838,0.00015990168,0.00025192965,0.000022242742,0.0002720223,0.0000139920885,0.00006163748,0.00013790779,0.000036487156],"category_scores_gemma":[0.0000053919116,0.00008358031,0.000039490064,0.00007630222,0.0002621776,0.00002436126,0.00022522312,0.0001520211,0.000003428967],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041862103,0.00011110134,0.015839852,0.000013948564,0.000020282592,2.3845755e-7,0.00005337506,5.790191e-7,0.98124087,0.00022964421,0.00034649283,0.0017250072],"study_design_scores_gemma":[0.00071149686,0.0007279916,0.9568812,0.00004245628,0.000018872579,0.000018584089,0.00012662535,9.085591e-7,0.034538783,0.00054429105,0.0061683124,0.0002204357],"about_ca_topic_score_codex":0.00021726656,"about_ca_topic_score_gemma":0.00013644432,"teacher_disagreement_score":0.94670206,"about_ca_system_score_codex":0.00003378659,"about_ca_system_score_gemma":0.0000023253992,"threshold_uncertainty_score":0.3408306},"labels":[],"label_agreement":null},{"id":"W4413354763","doi":"10.1128/aem.01207-25","title":"Slow food for lactobacilli: characterization of 1,2-propanediol metabolism in <i>Levilactobacillus parabrevis</i> FUA3697 in sourdough","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Mitacs; Canada Research Chairs","keywords":"1,3-Propanediol; Propanediol; Lactic acid; Biology; Biochemistry; Lactobacillaceae; Lactate dehydrogenase; Food science; Maltose; Strain (injury); Fermentation; Chemistry; Lactobacillus; Enzyme; Bacteria","score_opus":0.005755139789800129,"score_gpt":0.1681375809890201,"score_spread":0.16238244119921996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413354763","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998083,0.00033709544,0.000020278134,0.00030200763,0.0000651136,0.0005353447,0.00047908528,0.0000075257585,0.0001705293],"genre_scores_gemma":[0.9982662,0.00044110816,0.00005208035,0.0003606919,0.00002401034,0.000055975364,0.0007642908,0.0000012816558,0.000034314693],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99909776,0.000029837214,0.00030300993,0.00030010619,0.000022670585,0.0002466022],"domain_scores_gemma":[0.9997878,0.00005351795,0.00008205618,0.000048167007,0.0000026319337,0.000025820225],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001242517,0.00014813145,0.00030353744,0.00003139217,0.00004145221,0.000008077763,0.00011316885,0.00016499266,0.000022675054],"category_scores_gemma":[0.0000034420807,0.00007518758,0.000044987708,0.000131786,0.00010886303,0.000033085584,0.00008334348,0.00009261365,0.0000020597656],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000076556666,0.0001250491,0.005233046,0.000018538165,0.0000137134675,2.4307266e-7,0.00003600358,0.0000017460222,0.9772334,0.0008777058,0.000006926335,0.01637707],"study_design_scores_gemma":[0.0028365632,0.0006128506,0.55548996,0.00007582639,0.00004693531,0.000008817636,0.00046478157,0.000044183063,0.38608086,0.0013466665,0.05246305,0.0005295311],"about_ca_topic_score_codex":0.000012225366,"about_ca_topic_score_gemma":0.00004404935,"teacher_disagreement_score":0.59115255,"about_ca_system_score_codex":0.00002742669,"about_ca_system_score_gemma":0.000003778726,"threshold_uncertainty_score":0.30660602},"labels":[],"label_agreement":null},{"id":"W4413398677","doi":"10.1128/aem.00891-25","title":"Serotonergic and immunomodulatory properties of the psychobiotic candidate <i>Bacteroides finegoldii</i> UO.H1052 and its extracellular vesicles","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Extracellular; Bacteroides; Chemistry; Gut flora; Microbiology; Biology; Dysbiosis; Biochemistry; Cell biology; Bacteria","score_opus":0.003702031493222416,"score_gpt":0.1739091492123502,"score_spread":0.17020711771912778,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413398677","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9810471,0.018311508,0.0000057820953,0.00014829561,0.000059425496,0.00031644836,0.000057673435,0.000003826676,0.000049963746],"genre_scores_gemma":[0.9968696,0.0023047652,0.00002954038,0.00039095912,0.000018506227,0.000013618898,0.00004455094,0.000010984136,0.00031746938],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992306,0.000037718455,0.00019315371,0.00032806714,0.00001604599,0.00019439583],"domain_scores_gemma":[0.99970204,0.000005394547,0.00006917052,0.00018580769,0.000002982707,0.000034608955],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000071482296,0.00016558761,0.00018658071,0.000024994888,0.00016011366,0.000011860557,0.00009881762,0.00015222974,0.00000433502],"category_scores_gemma":[0.0000018226696,0.0001209355,0.000027865462,0.00002633499,0.00047843208,0.0000032000014,0.0002371965,0.00008994605,0.0000011967347],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052480118,0.000031561303,0.0053777997,0.00008844758,0.00004338778,2.7615727e-7,0.000059343798,0.0000016092479,0.99366015,0.0001295192,0.00007188148,0.00048353916],"study_design_scores_gemma":[0.00071287947,0.000078955134,0.046594113,0.00003499454,0.000031538097,0.000049634982,0.0001566042,0.00000525865,0.9420389,0.000032813496,0.010112773,0.00015155277],"about_ca_topic_score_codex":0.000013725285,"about_ca_topic_score_gemma":0.0000088027555,"teacher_disagreement_score":0.05162127,"about_ca_system_score_codex":0.000009265351,"about_ca_system_score_gemma":0.000020876716,"threshold_uncertainty_score":0.49316067},"labels":[],"label_agreement":null},{"id":"W4413595986","doi":"10.1128/aem.00898-25","title":"Establishing microbial communities to promote the growth of <i>Pleurotus ostreatus</i> through a top-down approach is hindered by the dominance of antagonistic interactions","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Fungal Biology and Applications","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Trois-Rivières","funders":"Ministère de l'Agriculture, des Pêcheries et de l'Alimentation","keywords":"Pleurotus ostreatus; Biology; Mushroom; Food science; Bacterial growth; Biotechnology; Microbial population biology; Bacteria; Genetics","score_opus":0.007178290183514568,"score_gpt":0.22004895419982876,"score_spread":0.2128706640163142,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413595986","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99264115,0.00038053063,0.00049171055,0.0025368473,0.000047596426,0.000712489,0.0005920959,0.000008451452,0.0025891443],"genre_scores_gemma":[0.99589187,0.00016576535,0.0006792282,0.002448611,0.00001619686,0.000091265065,0.00038147744,0.0000070578167,0.0003185181],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993506,0.000043962034,0.00024072731,0.00018323559,0.000021726493,0.00015976213],"domain_scores_gemma":[0.9994023,0.00017729087,0.00009410937,0.0003004361,0.000006612249,0.000019257854],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008663591,0.00013459176,0.000253725,0.000024454403,0.00022995034,0.0000069981566,0.00019041754,0.00008784766,0.00002369525],"category_scores_gemma":[0.0000071073405,0.000082609135,0.00004762628,0.000099184865,0.0008244178,0.000021405775,0.00018710956,0.0002450429,0.0000038744533],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014847543,0.0002053728,0.0018591353,0.000040573683,0.00008179077,1.2380082e-7,0.0018872694,0.0000014046009,0.98901725,0.0012972362,0.0047955005,0.0006658415],"study_design_scores_gemma":[0.0012196363,0.00017679937,0.0031827055,0.000053974207,0.00020451535,0.00013381787,0.0048530456,0.00001042711,0.9436048,0.00047310986,0.045943756,0.00014339392],"about_ca_topic_score_codex":0.00023546664,"about_ca_topic_score_gemma":0.000009230595,"teacher_disagreement_score":0.04541246,"about_ca_system_score_codex":0.000024912957,"about_ca_system_score_gemma":0.000015948968,"threshold_uncertainty_score":0.33687028},"labels":[],"label_agreement":null},{"id":"W4414062656","doi":"10.1128/aem.00408-24","title":"Seasonal patterns of viromes in urban aquatic environments of Manitoba","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; University of Manitoba","keywords":"Effluent; Water quality; Aquatic ecosystem; Wastewater; Fecal coliform; Environmental DNA; Metagenomics; Current (fluid)","score_opus":0.0034341878515896885,"score_gpt":0.18365708411985918,"score_spread":0.18022289626826948,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414062656","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982744,0.00008549335,0.00010681888,0.000034928104,0.00005888485,0.00018450302,0.00008612278,0.000003411268,0.0011654729],"genre_scores_gemma":[0.9991526,0.00016325458,0.00016162104,0.0001416472,0.000005504667,0.000014712329,0.00007809484,0.00000798745,0.00027457013],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991645,0.00002900543,0.00030583335,0.00027390223,0.00003315431,0.00019356544],"domain_scores_gemma":[0.9996725,0.00003979721,0.000102045546,0.00015561985,1.3695278e-7,0.000029942199],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006149696,0.00014432477,0.00024239233,0.000055276614,0.000032729306,0.0000030221725,0.0001311591,0.00009525372,0.0005663156],"category_scores_gemma":[0.0000014656254,0.00014031214,0.00004413405,0.000054309206,0.00033351642,0.000036875354,0.00025820834,0.00010411714,0.000046605375],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021085554,0.00015037946,0.20441985,0.000011337778,0.000018251862,9.25777e-7,0.0001009618,0.000009972651,0.7920727,0.000051226307,0.000057218436,0.0030860582],"study_design_scores_gemma":[0.0006546199,0.000058504265,0.8299618,0.000024401224,0.000024288114,0.000009903535,0.00045007237,0.000016255253,0.16296351,0.00009221813,0.0056106444,0.00013378775],"about_ca_topic_score_codex":0.00040105198,"about_ca_topic_score_gemma":0.0001841696,"teacher_disagreement_score":0.6291092,"about_ca_system_score_codex":0.00009709427,"about_ca_system_score_gemma":0.000002953465,"threshold_uncertainty_score":0.6200759},"labels":[],"label_agreement":null},{"id":"W4414084595","doi":"10.1128/aem.00977-25","title":"Enhanced metagenomic surveillance for bovine respiratory disease pathogens and antimicrobial resistance by hybridization capture sequencing","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; University of Regina","funders":"Ministry of Agriculture - Saskatchewan","keywords":"Metagenomics; Genotyping; Typing; Shotgun sequencing; Pathogen; Molecular diagnostics; Antibiotic resistance; Genomics","score_opus":0.005717099925824681,"score_gpt":0.2090259164276789,"score_spread":0.20330881650185423,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414084595","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9818972,0.011034059,0.003071821,0.0002020436,0.00017757124,0.00072614214,0.0026390655,0.000042593987,0.00020954735],"genre_scores_gemma":[0.99483013,0.000706517,0.00008024574,0.00080895337,0.000019829435,0.00009223861,0.0019249511,0.000020603598,0.0015165185],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99853283,0.00010942607,0.00028740393,0.0006202944,0.0000100529705,0.0004399749],"domain_scores_gemma":[0.9995094,0.000111706984,0.00008800529,0.00021993619,0.000010900742,0.000060050315],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000213566,0.00024629544,0.0003269491,0.00010001676,0.0004574851,0.000024628142,0.00010057175,0.00020224568,0.00008406875],"category_scores_gemma":[0.00002114982,0.00024210008,0.00006148214,0.00007539581,0.00053093396,0.0000426381,0.00014081073,0.0001626827,0.00002065057],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039431755,0.00006627848,0.0005890555,0.000094482326,0.000103766004,0.0000011566542,0.000054239572,0.0000042134884,0.9910771,0.0006046805,0.006317507,0.0006932074],"study_design_scores_gemma":[0.0034999675,0.000083065686,0.00243062,0.000041768508,0.00013035024,0.000016079337,0.00027554034,0.0000044952085,0.85540557,0.0002813283,0.1372736,0.00055765075],"about_ca_topic_score_codex":0.000022829749,"about_ca_topic_score_gemma":0.000038265884,"teacher_disagreement_score":0.13567156,"about_ca_system_score_codex":0.000121041936,"about_ca_system_score_gemma":0.00006268409,"threshold_uncertainty_score":0.9872555},"labels":[],"label_agreement":null},{"id":"W4414159440","doi":"10.1128/aem.01238-25","title":"The cell surface-associated rhamnose-glucose polysaccharide represents the receptor of <i>Streptococcus thermophilus</i> bacteriophage P738","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Biological Sciences","funders":"Science Foundation Ireland","keywords":"Bacteriophage; Starter; Polysaccharide; Bacteria; Industrial microbiology; Fermentation; Receptor; Bacterial cell structure","score_opus":0.00240759563346252,"score_gpt":0.1784039379181214,"score_spread":0.17599634228465888,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414159440","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9931071,0.00034894494,0.000009253946,0.00051917724,0.00027571476,0.0005091387,0.0001816772,0.000020979483,0.005028014],"genre_scores_gemma":[0.994242,0.0006732408,0.000039374103,0.0004989084,0.000016114574,0.000033387016,0.000075378535,0.000017363715,0.0044041914],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986517,0.00010471788,0.0003785373,0.00042539384,0.00005317998,0.00038647052],"domain_scores_gemma":[0.99909323,0.00020190235,0.00020977676,0.00044181827,0.000001969815,0.000051272305],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00021113137,0.00023939957,0.00023832999,0.000016313003,0.0005106824,0.000037203197,0.0004194328,0.00015132388,0.0011571313],"category_scores_gemma":[0.000006722566,0.00015116726,0.00010052294,0.0001123619,0.0009571002,0.000060891212,0.000639925,0.0002600975,0.0002553533],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048065962,0.00014360851,0.0032535952,0.0000035039493,0.000050262075,7.618283e-7,0.00013770204,0.000016308975,0.9913134,0.000023851808,0.0032494718,0.0017594858],"study_design_scores_gemma":[0.0007399607,0.00006426786,0.08676044,0.000012563073,0.00005681269,0.000008928198,0.00055828766,0.000010570747,0.8406802,0.00011445139,0.070762575,0.00023098299],"about_ca_topic_score_codex":0.00030640114,"about_ca_topic_score_gemma":0.0000776998,"teacher_disagreement_score":0.15063322,"about_ca_system_score_codex":0.00011878987,"about_ca_system_score_gemma":0.0000082666365,"threshold_uncertainty_score":0.9997559},"labels":[],"label_agreement":null},{"id":"W4414284821","doi":"10.1128/aem.01204-25","title":"Testing the priming effect in the deep ocean: are microorganisms too starved to consume recalcitrant organic carbon?","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Dissolved organic carbon; Microorganism; Microbial population biology; Microbial biodegradation; Heterotroph; Deep sea; Carbon cycle; Seawater; Priming (agriculture)","score_opus":0.006280925808072086,"score_gpt":0.18729649837376652,"score_spread":0.18101557256569445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414284821","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99665326,0.00012711502,0.000018329736,0.0009366752,0.00008956182,0.000724459,0.000013916262,0.000018283408,0.001418427],"genre_scores_gemma":[0.9927474,0.000020014499,0.00012458212,0.006953423,0.000014059387,0.000030858846,0.00004413051,0.000012951021,0.00005258242],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984075,0.00044785268,0.0002605985,0.00040975426,0.000032961638,0.0004413397],"domain_scores_gemma":[0.99869114,0.0008033641,0.00007604463,0.00038960855,9.778839e-7,0.000038868642],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000568309,0.0002476426,0.00029207993,0.0000376948,0.0004214559,0.000018411205,0.0005570426,0.00018567717,0.0003107676],"category_scores_gemma":[0.000030672614,0.00016069939,0.000033728422,0.00022758674,0.0007063407,0.000020904668,0.0006491791,0.00047679007,0.00010257768],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006301599,0.000069409165,0.035740223,0.0000075110893,0.000021682823,0.000004609954,0.0009703775,0.00005175312,0.961374,0.000030791354,0.0004769408,0.0011897028],"study_design_scores_gemma":[0.002380454,0.00067651854,0.84932834,0.000039651066,0.00016364647,0.00019451157,0.0049097273,0.000077209574,0.12560394,0.0017040074,0.0140527785,0.0008691988],"about_ca_topic_score_codex":0.00017564715,"about_ca_topic_score_gemma":0.0005824308,"teacher_disagreement_score":0.83577,"about_ca_system_score_codex":0.00012783418,"about_ca_system_score_gemma":0.000007467961,"threshold_uncertainty_score":0.6553131},"labels":[],"label_agreement":null},{"id":"W4414425243","doi":"10.1128/aem.01094-25","title":"DNA adenine methylation influences gene expression and biofilm formation in <i>Streptococcus mutans</i>","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biofilm; Epigenetics; DNA methylation; DNA; Regulation of gene expression; Gene expression; Methylation","score_opus":0.007251439925013286,"score_gpt":0.23844402626508185,"score_spread":0.23119258634006856,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414425243","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99770427,0.0011648024,0.00009065349,0.00007017097,0.00007804381,0.00029677496,0.000121152276,0.000016163513,0.00045799933],"genre_scores_gemma":[0.9983995,0.0004041503,0.0002057868,0.00017475452,0.000015842166,0.000045862438,0.00048567625,0.0000057929324,0.00026265235],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991245,0.000072567345,0.00024165584,0.00031529242,0.00002176901,0.00022416066],"domain_scores_gemma":[0.9997465,0.000053233358,0.00005339275,0.00011265331,0.0000026545733,0.00003155809],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011168393,0.00014031443,0.00019507532,0.0001229459,0.00012047245,0.000021046524,0.00008380404,0.00024524482,0.00014977429],"category_scores_gemma":[0.0000052909886,0.00012598897,0.000017877694,0.0000925421,0.0003133321,0.00010175604,0.0001733158,0.00017364133,0.00004355532],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059861726,0.000031177984,0.05310692,0.00002173934,0.0000098759765,0.000006709939,0.000096276286,0.0000037629732,0.9427357,0.00006568832,0.00014867427,0.003713665],"study_design_scores_gemma":[0.0010007669,0.00003815191,0.09065891,0.000019750507,0.00000821745,0.00007319906,0.00025212188,0.000009027496,0.90382415,0.00020728553,0.0037779287,0.00013047713],"about_ca_topic_score_codex":0.00002611911,"about_ca_topic_score_gemma":0.000058077516,"teacher_disagreement_score":0.038911484,"about_ca_system_score_codex":0.000038699676,"about_ca_system_score_gemma":0.000006115348,"threshold_uncertainty_score":0.5137681},"labels":[],"label_agreement":null},{"id":"W4414754299","doi":"10.1128/aem.00973-25","title":"Photoinactivation of influenza viruses by modulated indoor daylight spectrum and intensity","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Infection Control and Ventilation","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia, Okanagan Campus; University of British Columbia","funders":"Mitacs","keywords":"Infectivity; Daylight; Virus; Transmission (telecommunications); Influenza A virus; Light intensity; Daylighting; Bacteriophage MS2","score_opus":0.004686721488381343,"score_gpt":0.20888731106371625,"score_spread":0.2042005895753349,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414754299","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99851876,0.00017122945,0.00045348215,0.000097957054,0.000041025283,0.00020342004,0.00002186955,0.000011561821,0.00048071705],"genre_scores_gemma":[0.9986564,0.000057217134,0.000027962,0.0010675418,0.000009745767,0.0000059606778,0.000099321835,0.000003852659,0.000071983806],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99960667,0.000008272224,0.0001421944,0.00014952927,0.000013981791,0.0000793572],"domain_scores_gemma":[0.999849,0.000015536336,0.000053074073,0.000060876442,0.0000025073862,0.000018968256],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003928684,0.00007740297,0.00017526178,0.000054308846,0.000044077537,0.000002531309,0.000011768392,0.00009159391,0.000039757244],"category_scores_gemma":[0.0000027756003,0.00006760613,0.000016447391,0.000035681504,0.00013132584,0.000021135489,0.000033557877,0.00006890266,0.0000031609452],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002587765,0.0000666161,0.07602075,0.000015999332,0.000047197515,2.3524053e-7,0.000034644745,8.511513e-7,0.92222375,0.00013084481,0.00015078648,0.0010495766],"study_design_scores_gemma":[0.0018327052,0.000106298656,0.25613454,0.000013880544,0.000055577337,0.000023971044,0.00007469141,0.000083906685,0.73420244,0.00018458048,0.007218659,0.00006876755],"about_ca_topic_score_codex":0.000030007832,"about_ca_topic_score_gemma":0.000001456258,"teacher_disagreement_score":0.18802132,"about_ca_system_score_codex":0.000028331644,"about_ca_system_score_gemma":0.0000043194786,"threshold_uncertainty_score":0.2756898},"labels":[],"label_agreement":null},{"id":"W4414958077","doi":"10.1128/aem.01245-25","title":"The center of wheat domestication drives diversity of <i>Clavibacter</i> pathogens","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency","funders":"Shiraz University; Iran National Science Foundation; National Science Foundation","keywords":"Domestication; Foothills; Population; Agriculture; Genus; Diversity (politics); Cultivated plant taxonomy; Biodiversity","score_opus":0.004088955472074646,"score_gpt":0.15801367137000066,"score_spread":0.15392471589792603,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414958077","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985594,0.00026761217,0.000001662105,0.00016639606,0.0000479534,0.00010080461,0.0005267805,0.000003771232,0.00032559817],"genre_scores_gemma":[0.99869376,0.0009957505,0.00002348741,0.000069028974,0.000008003077,0.000003951647,0.00016978417,2.3847335e-7,0.000036000143],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99959445,0.000023980958,0.00012668235,0.00013120603,0.000017460126,0.00010623027],"domain_scores_gemma":[0.99975693,0.00012790263,0.00006260317,0.000037808903,0.0000022371964,0.000012526794],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005608691,0.000068926835,0.000124293,0.0000045280117,0.00018584014,0.0000025462132,0.000108533604,0.00004959546,0.0000126350815],"category_scores_gemma":[0.0000022133586,0.00002534152,0.000029640481,0.00003215204,0.00033384666,0.000010991175,0.00035008494,0.000032917967,0.0000021119706],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022772312,0.000042593,0.04787744,0.0000034520185,0.000021931844,1.136015e-7,0.000048578695,5.972408e-8,0.9433351,0.00019147224,0.00007012455,0.00838633],"study_design_scores_gemma":[0.00021595902,0.00006374409,0.8804056,0.000008075264,0.000027496388,0.000006307777,0.0004941396,4.7307273e-7,0.10681403,0.00024345776,0.011651474,0.0000692483],"about_ca_topic_score_codex":0.000009717766,"about_ca_topic_score_gemma":0.000024006693,"teacher_disagreement_score":0.8365211,"about_ca_system_score_codex":0.000008376407,"about_ca_system_score_gemma":9.918458e-7,"threshold_uncertainty_score":0.1429351},"labels":[],"label_agreement":null},{"id":"W4415263371","doi":"10.1128/aem.01868-25","title":"Metabolic and population profiles of active subseafloor autotrophs in young oceanic crust at deep-sea hydrothermal vents","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Gordon and Betty Moore Foundation; Center for Dark Energy Biosphere Investigations; Joint Institute for the Study of the Atmosphere and Ocean; National Aeronautics and Space Administration","keywords":"Hydrothermal vent; Autotroph; Population; Hydrothermal circulation; Microbial population biology; Ecosystem; Chemosynthesis; Heterotroph","score_opus":0.002990318588448541,"score_gpt":0.18188939192532588,"score_spread":0.17889907333687735,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415263371","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969257,0.0007432565,0.000007952465,0.000020177127,0.000048942336,0.00032479953,0.000038216545,0.0000074805744,0.0018834645],"genre_scores_gemma":[0.99897385,0.00043449068,0.00012430927,0.00006378202,0.000006183629,0.000022112326,0.0001333552,0.000010467954,0.00023142729],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991056,0.000048826056,0.00022977007,0.00034581916,0.000038925053,0.00023108973],"domain_scores_gemma":[0.9997384,0.000021281987,0.00008491718,0.00011347173,3.700647e-7,0.00004153753],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000082298335,0.00015787892,0.0002470471,0.000053083746,0.00008131131,0.000004012829,0.00007938594,0.00013947944,0.0005103174],"category_scores_gemma":[0.0000016086437,0.00013725722,0.000025437737,0.00008613175,0.00031322546,0.00004537046,0.00026822477,0.00011645045,0.00002524467],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007631159,0.00007218873,0.29532036,0.000010889577,0.000027843358,0.0000010248716,0.00023010555,0.00017993413,0.7004315,0.00019730907,0.0000060108573,0.0034464835],"study_design_scores_gemma":[0.0008837196,0.00003671667,0.9470791,0.000008653144,0.00003359741,0.000013577381,0.00013619698,0.00034015166,0.05068768,0.00035662088,0.0002743309,0.0001496514],"about_ca_topic_score_codex":0.00025202197,"about_ca_topic_score_gemma":0.000058280813,"teacher_disagreement_score":0.65175873,"about_ca_system_score_codex":0.00009872281,"about_ca_system_score_gemma":0.000002177056,"threshold_uncertainty_score":0.55971867},"labels":[],"label_agreement":null},{"id":"W4415736127","doi":"10.1128/aem.01881-25","title":"Survival of influenza virus H1N1 and murine norovirus in raw milk cheeses","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Health Canada","funders":"","keywords":"Raw milk; Norovirus; Pasteurization; Virus; Murine norovirus; Inoculation; Titer; Starter; Whole milk","score_opus":0.01074063468218232,"score_gpt":0.26383587824284827,"score_spread":0.25309524356066593,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415736127","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99713445,0.0014485329,0.000020270549,0.00027910798,0.000032398362,0.00023019023,0.000054533204,0.0000069684093,0.00079356966],"genre_scores_gemma":[0.9969104,0.0017708308,0.00015801823,0.0009531023,0.000016751932,0.000019434388,0.00007434825,0.000007274838,0.00008981794],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990504,0.000054221662,0.00029119462,0.00027947547,0.000025162526,0.0002995698],"domain_scores_gemma":[0.99971884,0.000041296676,0.0000407856,0.00012558528,0.0000019570111,0.0000715277],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015592911,0.0001334909,0.00044054913,0.000114938484,0.00002885367,0.0000023282776,0.000053075437,0.00012266662,0.00007506609],"category_scores_gemma":[0.000021109689,0.00011676399,0.000029715618,0.00005020613,0.0005950504,0.000016909757,0.00019958625,0.00017654245,0.000008004766],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044791086,0.000102981256,0.22137296,0.000048459908,0.000035877016,0.000009152609,0.0000298247,0.0000015310752,0.77341765,0.00013929456,0.00011376917,0.0042805863],"study_design_scores_gemma":[0.005648023,0.0005921948,0.9137253,0.0000615903,0.00003319824,0.000109663226,0.00037871517,0.000016123773,0.068180405,0.00039221984,0.010711439,0.00015111422],"about_ca_topic_score_codex":0.00022541202,"about_ca_topic_score_gemma":0.0001089465,"teacher_disagreement_score":0.70523727,"about_ca_system_score_codex":0.0000349103,"about_ca_system_score_gemma":0.000011306792,"threshold_uncertainty_score":0.47614974},"labels":[],"label_agreement":null},{"id":"W4416088916","doi":"10.1128/aem.01454-25","title":"Incorporation of omega-3 polyunsaturated fatty acids into glycerolipids in microalga <i>Emiliania huxleyi</i> : radiochemical analysis of glycerolipid biosynthesis","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Algal biology and biofuel production","field":"Energy","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Saskatchewan Research Council (Canada); University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Phosphatidylcholine; Polyunsaturated fatty acid; Phosphatidylethanolamine; Fatty acid; Glycerol; Biosynthesis; Docosahexaenoic acid","score_opus":0.0032970716917532037,"score_gpt":0.18666401083552264,"score_spread":0.18336693914376945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416088916","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99842775,0.0005886064,0.00007257721,0.00012430121,0.00011372477,0.00015607876,0.00006907578,0.000016885786,0.00043101542],"genre_scores_gemma":[0.9981033,0.0002584132,0.0004713397,0.0002025748,0.000027951577,0.000014322421,0.0008743497,0.0000088861225,0.00003884765],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99860543,0.00009269887,0.00055448315,0.00048530885,0.000034990095,0.00022708162],"domain_scores_gemma":[0.99942595,0.000071661656,0.00020489497,0.00025711497,0.000007379844,0.000033017244],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016647257,0.00022602055,0.00059354317,0.00038812612,0.00005561028,0.0000034596517,0.00015368055,0.00045253753,0.000067116234],"category_scores_gemma":[0.00001066258,0.00020468932,0.000103009035,0.00061754824,0.00074082246,0.0000391281,0.00012401877,0.00017302785,0.000005728937],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00057442527,0.000156639,0.055031776,0.000031701762,0.00045557745,4.534777e-7,0.00013081916,0.00004964588,0.9384681,0.00067241443,0.000042482156,0.0043859454],"study_design_scores_gemma":[0.0007839078,0.00007847589,0.05027674,0.000010813882,0.00034310628,0.0000047226345,0.00019636321,0.000045467306,0.9461633,0.0005461529,0.0013688724,0.00018207532],"about_ca_topic_score_codex":0.00032683558,"about_ca_topic_score_gemma":0.00014448547,"teacher_disagreement_score":0.007695183,"about_ca_system_score_codex":0.00009413341,"about_ca_system_score_gemma":0.00001703565,"threshold_uncertainty_score":0.8346988},"labels":[],"label_agreement":null},{"id":"W4416314364","doi":"10.1128/aem.01602-25","title":"Defining new Buruli ulcer endemic areas in urban southeastern Australia using bacterial genomics-informed possum excreta surveys","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Health and Medical Research Council","keywords":"Buruli ulcer; Mycobacterium ulcerans; Wildlife; Zoonosis; Transmission (telecommunications); Vector (molecular biology); Wildlife conservation; One Health","score_opus":0.01942014850772882,"score_gpt":0.2657933455102734,"score_spread":0.24637319700254456,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416314364","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982607,0.00027315342,0.00006248151,0.00010886092,0.0001450062,0.00039058182,0.00015486099,0.000015977132,0.0005884088],"genre_scores_gemma":[0.997632,0.00015349395,0.00035859397,0.00028205512,0.0001000172,0.00001541905,0.0008560186,0.000017973325,0.0005844102],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998622,0.000072377145,0.00033825118,0.00039833147,0.000044040782,0.0005249931],"domain_scores_gemma":[0.99944514,0.00010025475,0.00006198383,0.00020445349,0.000002271307,0.00018590283],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019862055,0.00023267271,0.00040306267,0.00015841171,0.0000648416,0.000024715946,0.00009999822,0.00024073859,0.0006625457],"category_scores_gemma":[0.000015834887,0.0002177168,0.000056856035,0.00007502434,0.00020191685,0.00004251701,0.00019261488,0.0002514461,0.00011644041],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024607306,0.000049256883,0.32688817,0.000032543427,0.000052043844,0.000009634205,0.00021590917,0.0000017503156,0.6709514,0.000054541044,0.00033177497,0.0011668929],"study_design_scores_gemma":[0.0070204604,0.00021571381,0.9324519,0.0001250805,0.00012362971,0.00017069568,0.0008051201,0.000034171157,0.044425614,0.00012737846,0.014042272,0.00045794915],"about_ca_topic_score_codex":0.0006435195,"about_ca_topic_score_gemma":0.000115671726,"teacher_disagreement_score":0.62652576,"about_ca_system_score_codex":0.00021976112,"about_ca_system_score_gemma":0.00013747391,"threshold_uncertainty_score":0.8878234},"labels":[],"label_agreement":null},{"id":"W4416788447","doi":"10.1128/aem.01033-25","title":"Investigating the antimethanogenic effects of selected nitro-compounds on methane production, rumen fermentation, and methanogenic archaea <i>in vitro</i>","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institute of Food and Agriculture; McGill University; U.S. Department of Agriculture","keywords":"Propionate; Rumen; Fermentation; Methanogenesis; Butyrate; Archaea; Methane; Nitrate; Methanomicrobiales","score_opus":0.004655847207924536,"score_gpt":0.18582378237818864,"score_spread":0.1811679351702641,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416788447","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99799347,0.0005173231,0.0000014547442,0.0008613219,0.000053657746,0.00041595058,0.000025188994,0.000011773446,0.000119883225],"genre_scores_gemma":[0.9986586,0.00028737576,0.000085089,0.0006350931,0.00002410789,0.000056297777,0.00019447278,0.0000012410771,0.000057736946],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99904925,0.00017009162,0.00020662861,0.00034086368,0.000031464395,0.00020168143],"domain_scores_gemma":[0.99951285,0.00031808854,0.00008233482,0.00005115002,0.0000052840405,0.00003026927],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014660797,0.00014511832,0.0002326965,0.000032597087,0.00011971777,0.000005904733,0.0000912462,0.000084290274,0.0000104539395],"category_scores_gemma":[0.000023013976,0.000064315645,0.000027843142,0.00022695986,0.00047644298,0.000022792752,0.00008868145,0.00012116457,0.000002824217],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006751795,0.00010171489,0.0038917547,0.000018990682,0.000027120072,2.716259e-7,0.00007986237,0.0000010378255,0.9895153,0.00017955975,0.000055484696,0.0060613933],"study_design_scores_gemma":[0.00034772418,0.00013463368,0.21165746,0.0000122140655,0.000017579634,0.000009006702,0.00019105754,0.000002055644,0.78591967,0.001358134,0.00026688163,0.000083585706],"about_ca_topic_score_codex":0.000035003428,"about_ca_topic_score_gemma":0.000009493611,"teacher_disagreement_score":0.20776571,"about_ca_system_score_codex":0.000020904923,"about_ca_system_score_gemma":0.0000047463227,"threshold_uncertainty_score":0.26227158},"labels":[],"label_agreement":null},{"id":"W4417119270","doi":"10.1128/aem.01346-25","title":"Discovery of MBL-AB01: a novel antibacterial xanthone antibiotic with high activity against methicillin-resistant <i>Staphylococcus aureus</i>","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Discovery Centre","funders":"HORIZON EUROPE European Innovation Council; Norges Forskningsråd","keywords":"Antibiotics; Gene cluster; Xanthone; Antibacterial activity; Gene; Mutagenesis; Bacteria; Drug discovery","score_opus":0.0055733154786938395,"score_gpt":0.19598943224826473,"score_spread":0.1904161167695709,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417119270","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99742115,0.00029757278,0.00011769843,0.00065167143,0.00014032917,0.00053325074,0.0005449054,0.000020800178,0.0002725984],"genre_scores_gemma":[0.9974664,0.00038669776,0.0008549797,0.00070974225,0.000077662095,0.0000014383494,0.0002486916,0.000019775562,0.00023459972],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99874157,0.00003255556,0.00028471183,0.0005667729,0.00005758393,0.0003168059],"domain_scores_gemma":[0.9994079,0.000071406386,0.00015177968,0.00031091017,0.000007779358,0.000050255618],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001370452,0.00029604547,0.00064790016,0.00010304082,0.00010191793,0.00001558403,0.000100874335,0.00024688564,0.00001940162],"category_scores_gemma":[0.00000893251,0.00020237765,0.00007347637,0.00013129186,0.00070087763,0.000053639134,0.00015449763,0.00025832347,0.0000042001425],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018618178,0.0005149831,0.00063900184,0.00017917024,0.00025485212,0.0000073493807,0.00003377966,0.0000016744175,0.9944084,0.00022534025,0.00012708164,0.0017464982],"study_design_scores_gemma":[0.0020981492,0.0002653771,0.018996358,0.00011359148,0.0002055123,0.000008917139,0.00008434874,0.0000012445374,0.97583896,0.000011190092,0.0021562418,0.0002200883],"about_ca_topic_score_codex":0.00007621239,"about_ca_topic_score_gemma":0.000013372065,"teacher_disagreement_score":0.01856947,"about_ca_system_score_codex":0.000059171998,"about_ca_system_score_gemma":0.00004482617,"threshold_uncertainty_score":0.8252721},"labels":[],"label_agreement":null},{"id":"W7117447750","doi":"10.1128/aem.01984-25","title":"Multi-omics provides functional insights and underscores practical challenges in assessing the composition and performance of a nitrifying microbial consortium","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University; Environment and Climate Change Canada","funders":"Natural Sciences and Engineering Research Council of Canada; Environment and Climate Change Canada","keywords":"Amplicon sequencing; Context (archaeology); DNA sequencing; Metagenomics; Sustainability; Microbial genetics; Nitrifying bacteria","score_opus":0.023728724655507807,"score_gpt":0.23030495497585288,"score_spread":0.20657623032034506,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7117447750","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983493,0.0010237412,0.000029489582,0.00023738817,0.000025658579,0.00022014862,0.000005100107,0.0000049626346,0.000104181534],"genre_scores_gemma":[0.9964818,0.0013169857,0.0020446614,0.00009298938,0.0000061917335,0.000011832346,0.000028739309,0.0000046707323,0.000012146893],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993891,0.00004472434,0.00015373118,0.00025172313,0.000025555313,0.00013515835],"domain_scores_gemma":[0.99977136,0.000088783636,0.000054030414,0.00006400648,5.824315e-7,0.00002126776],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008213095,0.00011890426,0.00014078806,0.000034487264,0.00013371171,0.000015084075,0.000033529792,0.000079202284,0.000009402808],"category_scores_gemma":[0.0000012996392,0.00008581594,0.000012534089,0.000030092242,0.0007369571,0.00008708728,0.00017042947,0.000103520404,0.0000024674887],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007470726,0.000104055536,0.069418505,0.000021104779,0.00002027821,0.0000013997977,0.00027325752,0.000013642063,0.9276008,0.00009005861,0.0000055254304,0.0023766553],"study_design_scores_gemma":[0.0024945885,0.000133924,0.74821055,0.00004109926,0.00007825159,0.00016713777,0.0024542983,0.00086221803,0.24465857,0.00021869538,0.00043516906,0.00024550274],"about_ca_topic_score_codex":0.000020041325,"about_ca_topic_score_gemma":0.000023038874,"teacher_disagreement_score":0.6829422,"about_ca_system_score_codex":0.000046078952,"about_ca_system_score_gemma":0.000005390852,"threshold_uncertainty_score":0.34994724},"labels":[],"label_agreement":null},{"id":"W7117494338","doi":"10.1128/aem.02171-24","title":"Lime amendment to chronically acidified forest soils results in shifts in prokaryotic communities","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Soil Carbon and Nitrogen Dynamics","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Government of Nova Scotia; Dalhousie University","funders":"","keywords":"Wood ash; Soil water; Amendment; Nutrient; Lime; Soil pH; Soil acidification; Microcosm; Soil health; Abundance (ecology)","score_opus":0.0077279993732715406,"score_gpt":0.188074725064848,"score_spread":0.18034672569157645,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7117494338","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973766,0.0001378564,7.018573e-7,0.0008823917,0.000041476746,0.00036227348,0.00007014038,0.000015697244,0.0011128585],"genre_scores_gemma":[0.9981352,0.00013671946,0.000041144045,0.001184877,0.000014699326,0.00006602307,0.00035329905,0.0000011217808,0.000066882545],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990769,0.0000550403,0.00027052156,0.00025649383,0.000028909655,0.00031214993],"domain_scores_gemma":[0.99972045,0.00012535731,0.00003324777,0.000071470546,0.000001179946,0.00004826174],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015996097,0.00014953315,0.00021388177,0.000035848574,0.00006380288,0.00001591191,0.00017351049,0.00013179422,0.000022903103],"category_scores_gemma":[0.0000035740804,0.000076395845,0.000027383387,0.00012996462,0.00014259618,0.000019004508,0.00024081262,0.00016196218,0.000019582449],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026308597,0.00023601319,0.041126262,0.000007406808,0.000011463564,0.0000047081153,0.00039019602,0.000088842964,0.9477965,0.0006791618,0.000056618337,0.00933969],"study_design_scores_gemma":[0.0014864814,0.0003592116,0.98473907,0.000047321446,0.000009346113,0.000006000832,0.0029102715,0.00018271244,0.0064067845,0.0010035655,0.0025101937,0.0003390324],"about_ca_topic_score_codex":0.00062020373,"about_ca_topic_score_gemma":0.014751023,"teacher_disagreement_score":0.9436128,"about_ca_system_score_codex":0.00010842684,"about_ca_system_score_gemma":0.0000054593215,"threshold_uncertainty_score":0.8231417},"labels":[],"label_agreement":null},{"id":"W7618895","doi":"10.1128/aem.61.7.2802-2805.1995","title":"COMMERCIAL VIABILITY ANALYSIS OF LIGNIN BASED CARBON FIBRE","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Lignin and Wood Chemistry","field":"Engineering","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Simon Fraser University; Genome British Columbia; Genome Canada","keywords":"Lignin; Pulp and paper industry; Carbon fibers; Environmental science; Chemistry; Food science; Materials science; Composite material; Engineering; Organic chemistry","score_opus":0.0019967554710664027,"score_gpt":0.14396428844957082,"score_spread":0.14196753297850442,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7618895","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957194,0.000040447117,0.000034730405,0.000009915708,0.00002612019,0.000045190613,0.00006389185,0.00002678605,0.0040335464],"genre_scores_gemma":[0.99951154,0.000008496901,0.00012978085,0.000064554435,0.000019774734,0.0000055485248,0.00024563025,0.000008530516,0.0000061283727],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99956566,0.000010989172,0.0001364672,0.0001442335,0.000017179214,0.00012544269],"domain_scores_gemma":[0.99975765,0.000040900744,0.000020433201,0.00014592844,6.046742e-7,0.00003446597],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005362708,0.00010433517,0.00023197831,0.000034856002,0.000016980277,0.0000019631586,0.000059447804,0.000107869935,0.000019903602],"category_scores_gemma":[6.677906e-7,0.00010164358,0.000047497186,0.00005630958,0.00013307162,0.000005170312,0.000029669523,0.00006448281,0.0000026015475],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000026118016,0.000022732329,0.01146816,0.000021967815,0.000110700676,9.6258155e-8,0.000034930665,0.0003629963,0.98730105,0.000011903,0.0001448786,0.00051797717],"study_design_scores_gemma":[0.00028376374,0.000020011774,0.008981479,0.0000015884066,0.00016004831,8.035579e-7,0.0000328246,0.0020372313,0.98731476,0.000018734589,0.0010203396,0.00012840504],"about_ca_topic_score_codex":0.0000079223855,"about_ca_topic_score_gemma":0.0000031488348,"teacher_disagreement_score":0.004027418,"about_ca_system_score_codex":0.00002004152,"about_ca_system_score_gemma":0.0000012835194,"threshold_uncertainty_score":0.4144905},"labels":[],"label_agreement":null},{"id":"W8899993","doi":"10.1128/aem.62.11.4026-4031.1996","title":"Professores de violão e seus modos de ser e agir na profissão : um estudo sobre culturas profissionais no campo da música","year":2009,"lang":"en","type":"dissertation","venue":"Applied and Environmental Microbiology","topic":"Diverse Music Education Insights","field":"Arts and Humanities","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Political science; Psychology; Sociology","score_opus":0.011745259848680066,"score_gpt":0.21506065734828464,"score_spread":0.20331539749960456,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W8899993","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9357666,0.00029849794,0.0000011722781,0.000207321,0.00091819884,0.001101153,0.00032562093,0.00008681778,0.06129466],"genre_scores_gemma":[0.91821903,0.00026324758,0.00018234411,0.0012449885,0.0006870459,0.000330872,0.009140375,0.00006957752,0.06986254],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99825776,0.00007511861,0.0003686022,0.000657501,0.0000907043,0.0005503313],"domain_scores_gemma":[0.99927366,0.00003909644,0.00027028593,0.0002550489,0.00001962572,0.00014230754],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009651587,0.0005223231,0.00045600798,0.000103973005,0.00060675014,0.000117478594,0.00026484576,0.0004512781,0.0017817544],"category_scores_gemma":[0.000005210224,0.00043143504,0.00009913501,0.000022936263,0.0003995398,0.000094679875,0.000078892714,0.0004626298,0.0005281378],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003671463,0.001181622,0.00081806444,0.0004397091,0.0004413385,0.000024349787,0.15090388,0.000006599829,0.73161983,0.023013627,0.080947496,0.010236319],"study_design_scores_gemma":[0.0012892898,0.00026870368,0.0073992168,0.00019749822,0.00027846772,0.000051286275,0.069411226,0.0000071230047,0.017984292,0.001877274,0.8998155,0.001420104],"about_ca_topic_score_codex":0.00015199256,"about_ca_topic_score_gemma":0.00017313969,"teacher_disagreement_score":0.81886804,"about_ca_system_score_codex":0.00022683809,"about_ca_system_score_gemma":0.00011314088,"threshold_uncertainty_score":0.99981374},"labels":[],"label_agreement":null}]}